Query 044791
Match_columns 623
No_of_seqs 510 out of 3569
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 06:47:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044791.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044791hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 3.9E-65 8.5E-70 588.5 35.1 419 192-623 181-697 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 3.8E-58 8.3E-63 542.1 35.1 409 198-621 354-857 (857)
3 PLN03081 pentatricopeptide (PP 100.0 5.6E-49 1.2E-53 454.1 37.2 369 200-597 89-521 (697)
4 PLN03218 maturation of RBCL 1; 100.0 2.5E-47 5.4E-52 447.0 34.5 368 205-602 382-786 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.6E-46 3.4E-51 440.2 31.9 299 245-570 471-781 (1060)
6 PLN03077 Protein ECB2; Provisi 100.0 8.6E-46 1.9E-50 437.1 30.7 393 192-615 144-598 (857)
7 PRK11788 tetratricopeptide rep 99.8 1E-18 2.2E-23 188.2 29.8 291 205-538 47-355 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.8 2.8E-17 6.1E-22 193.7 33.7 249 205-476 511-765 (899)
9 PRK11788 tetratricopeptide rep 99.8 1.5E-17 3.2E-22 179.1 26.7 267 251-543 40-322 (389)
10 TIGR02917 PEP_TPR_lipo putativ 99.8 4.6E-17 9.9E-22 191.9 33.0 355 205-601 477-868 (899)
11 KOG4626 O-linked N-acetylgluco 99.7 3.1E-15 6.8E-20 158.5 24.0 257 200-482 220-491 (966)
12 PRK15174 Vi polysaccharide exp 99.7 3.3E-14 7.2E-19 162.9 28.7 312 205-568 54-377 (656)
13 TIGR00990 3a0801s09 mitochondr 99.6 1.7E-13 3.7E-18 156.7 32.5 347 205-598 139-570 (615)
14 KOG4626 O-linked N-acetylgluco 99.6 9.3E-15 2E-19 155.0 19.4 310 198-538 150-491 (966)
15 PRK15174 Vi polysaccharide exp 99.6 3.6E-13 7.8E-18 154.4 29.6 318 250-599 46-381 (656)
16 TIGR00990 3a0801s09 mitochondr 99.5 8.3E-12 1.8E-16 142.8 31.6 317 251-599 132-537 (615)
17 PRK11447 cellulose synthase su 99.5 1.2E-11 2.6E-16 150.9 32.3 338 205-598 281-739 (1157)
18 PRK11447 cellulose synthase su 99.5 2.2E-11 4.8E-16 148.6 29.9 314 205-567 363-735 (1157)
19 PRK10049 pgaA outer membrane p 99.5 1.4E-10 3.1E-15 135.6 34.7 363 200-600 20-457 (765)
20 KOG4422 Uncharacterized conser 99.4 1.3E-10 2.9E-15 119.3 26.6 229 245-477 206-463 (625)
21 PRK09782 bacteriophage N4 rece 99.4 1.8E-10 3.8E-15 136.0 31.1 226 276-529 476-705 (987)
22 PRK10049 pgaA outer membrane p 99.4 2.5E-10 5.4E-15 133.6 30.8 315 205-569 61-453 (765)
23 PRK09782 bacteriophage N4 rece 99.4 1.7E-10 3.7E-15 136.2 27.3 228 247-482 478-712 (987)
24 KOG1126 DNA-binding cell divis 99.3 7.2E-11 1.6E-15 127.7 19.4 230 246-481 353-625 (638)
25 KOG1126 DNA-binding cell divis 99.3 6.6E-11 1.4E-15 128.0 18.7 270 260-565 333-613 (638)
26 PRK14574 hmsH outer membrane p 99.3 3.8E-09 8.1E-14 122.6 32.5 358 205-599 46-513 (822)
27 PF13041 PPR_2: PPR repeat fam 99.3 9.5E-12 2.1E-16 92.9 6.8 50 341-390 1-50 (50)
28 PF13429 TPR_15: Tetratricopep 99.3 4.5E-12 9.7E-17 130.5 6.1 251 251-526 13-273 (280)
29 PF14432 DYW_deaminase: DYW fa 99.3 3.5E-12 7.7E-17 112.5 4.0 86 522-613 22-116 (116)
30 KOG4422 Uncharacterized conser 99.2 1.2E-09 2.7E-14 112.3 22.0 226 268-509 198-449 (625)
31 PF13429 TPR_15: Tetratricopep 99.2 6.8E-11 1.5E-15 121.7 12.7 246 205-475 20-276 (280)
32 PRK10747 putative protoheme IX 99.2 2.1E-09 4.5E-14 116.4 24.1 274 259-567 97-385 (398)
33 TIGR02521 type_IV_pilW type IV 99.2 5.2E-09 1.1E-13 102.5 24.8 196 277-476 31-232 (234)
34 PRK10747 putative protoheme IX 99.2 6.6E-09 1.4E-13 112.5 27.8 216 257-479 129-393 (398)
35 TIGR02521 type_IV_pilW type IV 99.2 3.9E-09 8.5E-14 103.4 22.1 199 310-529 29-231 (234)
36 PF13041 PPR_2: PPR repeat fam 99.2 5E-11 1.1E-15 89.0 6.2 50 275-324 1-50 (50)
37 TIGR00540 hemY_coli hemY prote 99.2 3.2E-09 7E-14 115.4 22.7 285 258-567 96-394 (409)
38 KOG1840 Kinesin light chain [C 99.1 6E-09 1.3E-13 113.7 22.8 233 245-477 198-480 (508)
39 PRK12370 invasion protein regu 99.1 7.3E-09 1.6E-13 116.9 24.3 213 260-479 275-505 (553)
40 KOG1155 Anaphase-promoting com 99.1 3.1E-08 6.7E-13 103.3 25.8 352 205-598 176-552 (559)
41 TIGR00540 hemY_coli hemY prote 99.1 2.4E-08 5.1E-13 108.6 26.6 221 253-475 160-398 (409)
42 PRK14574 hmsH outer membrane p 99.1 7.3E-08 1.6E-12 112.0 31.3 314 205-566 114-507 (822)
43 COG2956 Predicted N-acetylgluc 99.1 4.3E-08 9.4E-13 98.2 24.5 285 205-530 47-347 (389)
44 COG3071 HemY Uncharacterized e 99.0 1.2E-07 2.6E-12 97.7 26.3 247 205-479 96-393 (400)
45 PRK12370 invasion protein regu 99.0 3.7E-08 8.1E-13 111.2 23.7 207 259-475 317-534 (553)
46 KOG1129 TPR repeat-containing 99.0 2.6E-08 5.6E-13 99.6 17.9 229 250-481 227-463 (478)
47 KOG1840 Kinesin light chain [C 99.0 4.1E-08 8.8E-13 107.3 20.5 236 278-527 200-476 (508)
48 KOG2076 RNA polymerase III tra 99.0 2.4E-07 5.1E-12 103.7 25.8 282 205-528 151-510 (895)
49 COG2956 Predicted N-acetylgluc 98.9 1E-07 2.2E-12 95.6 19.4 183 292-477 50-244 (389)
50 PF12569 NARP1: NMDA receptor- 98.9 1.3E-06 2.7E-11 96.6 28.9 289 253-567 11-329 (517)
51 KOG2003 TPR repeat-containing 98.9 3.5E-08 7.6E-13 102.1 15.4 88 205-306 249-338 (840)
52 KOG4318 Bicoid mRNA stability 98.9 4.9E-08 1.1E-12 108.5 16.9 239 270-546 18-281 (1088)
53 KOG2002 TPR-containing nuclear 98.9 1.6E-06 3.5E-11 97.9 27.9 286 205-530 176-481 (1018)
54 KOG2003 TPR repeat-containing 98.8 5.8E-07 1.3E-11 93.3 22.3 233 260-508 470-709 (840)
55 KOG1155 Anaphase-promoting com 98.8 1.5E-07 3.3E-12 98.2 18.0 210 205-439 274-491 (559)
56 PRK11189 lipoprotein NlpI; Pro 98.8 1.1E-06 2.4E-11 91.2 23.7 194 278-479 65-268 (296)
57 PF04733 Coatomer_E: Coatomer 98.8 1.2E-07 2.6E-12 97.8 15.6 223 250-479 39-268 (290)
58 KOG2002 TPR-containing nuclear 98.8 5.5E-06 1.2E-10 93.7 28.2 183 205-405 282-479 (1018)
59 KOG0547 Translocase of outer m 98.8 5.9E-06 1.3E-10 87.1 26.5 318 251-596 120-563 (606)
60 PRK11189 lipoprotein NlpI; Pro 98.7 2E-06 4.4E-11 89.3 22.8 226 206-454 39-277 (296)
61 KOG1129 TPR repeat-containing 98.7 1.2E-06 2.5E-11 88.0 18.8 237 273-536 219-462 (478)
62 KOG2076 RNA polymerase III tra 98.7 2.7E-06 5.8E-11 95.5 22.9 319 257-600 150-513 (895)
63 COG3071 HemY Uncharacterized e 98.7 7.3E-06 1.6E-10 84.7 23.7 282 251-565 87-383 (400)
64 PF12854 PPR_1: PPR repeat 98.7 3.6E-08 7.9E-13 66.9 4.5 34 306-339 1-34 (34)
65 cd05804 StaR_like StaR_like; a 98.6 0.0001 2.2E-09 78.2 32.7 301 249-566 9-330 (355)
66 KOG0547 Translocase of outer m 98.6 2.5E-06 5.4E-11 89.9 18.6 214 289-527 338-563 (606)
67 KOG1915 Cell cycle control pro 98.6 3.8E-05 8.2E-10 80.8 26.6 259 258-530 153-536 (677)
68 COG3063 PilF Tfp pilus assembl 98.6 1.4E-05 3E-10 77.3 21.4 197 279-479 37-239 (250)
69 KOG1173 Anaphase-promoting com 98.6 5.7E-06 1.2E-10 88.7 20.3 264 253-543 251-529 (611)
70 PF12854 PPR_1: PPR repeat 98.5 1.1E-07 2.3E-12 64.6 4.2 32 373-404 2-33 (34)
71 PLN02789 farnesyltranstransfer 98.5 2.3E-05 5.1E-10 81.9 23.7 200 256-460 47-268 (320)
72 KOG1125 TPR repeat-containing 98.5 3.9E-06 8.4E-11 90.3 17.5 225 285-532 293-532 (579)
73 PF12569 NARP1: NMDA receptor- 98.5 2.3E-05 5E-10 86.7 23.4 250 205-478 16-293 (517)
74 COG3063 PilF Tfp pilus assembl 98.5 1.8E-05 4E-10 76.4 18.7 201 248-452 37-245 (250)
75 KOG3616 Selective LIM binding 98.5 1E-05 2.2E-10 88.4 18.8 135 318-471 738-874 (1636)
76 KOG1128 Uncharacterized conser 98.4 4.8E-06 1E-10 91.7 16.3 222 247-482 399-622 (777)
77 KOG4318 Bicoid mRNA stability 98.4 1.1E-06 2.3E-11 98.2 11.2 211 298-543 11-246 (1088)
78 KOG1173 Anaphase-promoting com 98.4 1.6E-05 3.5E-10 85.3 19.2 203 248-455 314-530 (611)
79 KOG1174 Anaphase-promoting com 98.4 5.1E-05 1.1E-09 78.7 22.0 225 251-480 237-504 (564)
80 KOG1156 N-terminal acetyltrans 98.4 0.00026 5.6E-09 77.4 28.4 225 255-482 50-289 (700)
81 KOG1070 rRNA processing protei 98.4 2.8E-05 6.1E-10 90.7 22.1 224 275-508 1455-1686(1710)
82 KOG0495 HAT repeat protein [RN 98.4 0.00015 3.2E-09 79.1 26.1 226 253-481 625-885 (913)
83 TIGR03302 OM_YfiO outer membra 98.4 2E-05 4.4E-10 78.7 18.7 179 275-476 31-232 (235)
84 KOG1125 TPR repeat-containing 98.4 1.2E-05 2.6E-10 86.6 17.2 228 251-482 290-533 (579)
85 cd05804 StaR_like StaR_like; a 98.4 0.00012 2.7E-09 77.6 25.4 194 278-477 7-216 (355)
86 KOG2376 Signal recognition par 98.3 0.00026 5.6E-09 76.7 25.9 345 205-598 24-486 (652)
87 KOG0495 HAT repeat protein [RN 98.3 0.00063 1.4E-08 74.4 28.6 188 279-471 518-709 (913)
88 KOG1915 Cell cycle control pro 98.3 0.0018 3.9E-08 68.5 31.1 357 205-603 85-540 (677)
89 TIGR03302 OM_YfiO outer membra 98.3 4.4E-05 9.5E-10 76.2 18.0 178 244-439 31-228 (235)
90 KOG3617 WD40 and TPR repeat-co 98.3 0.00017 3.8E-09 80.1 23.1 202 248-473 759-993 (1416)
91 KOG3081 Vesicle coat complex C 98.3 0.0002 4.3E-09 70.7 21.2 222 251-479 46-274 (299)
92 KOG3616 Selective LIM binding 98.2 3.5E-05 7.6E-10 84.4 16.0 110 350-471 739-848 (1636)
93 KOG4340 Uncharacterized conser 98.2 0.00022 4.7E-09 71.2 20.1 243 250-510 14-327 (459)
94 KOG1070 rRNA processing protei 98.2 0.00018 4E-09 84.2 22.5 231 238-474 1450-1698(1710)
95 PRK15359 type III secretion sy 98.2 3.2E-05 6.9E-10 71.3 13.6 110 334-447 15-125 (144)
96 KOG1174 Anaphase-promoting com 98.2 0.00038 8.3E-09 72.4 22.4 159 309-471 229-392 (564)
97 PLN02789 farnesyltranstransfer 98.2 0.00026 5.6E-09 74.1 21.5 192 280-475 40-249 (320)
98 KOG1128 Uncharacterized conser 98.1 5.7E-05 1.2E-09 83.4 15.7 153 316-475 402-581 (777)
99 PRK10370 formate-dependent nit 98.1 0.00021 4.6E-09 69.6 17.2 121 356-480 52-177 (198)
100 TIGR00756 PPR pentatricopeptid 98.1 6.2E-06 1.3E-10 55.7 4.5 34 345-378 2-35 (35)
101 PRK15359 type III secretion sy 98.1 9.8E-05 2.1E-09 68.1 13.8 105 267-372 14-121 (144)
102 PF04733 Coatomer_E: Coatomer 98.0 8.3E-05 1.8E-09 76.8 14.5 185 251-446 70-268 (290)
103 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00017 3.7E-09 77.1 17.0 127 313-444 170-297 (395)
104 PRK15179 Vi polysaccharide bio 98.0 0.00065 1.4E-08 78.1 22.8 131 273-406 82-216 (694)
105 PRK15179 Vi polysaccharide bio 98.0 0.00035 7.6E-09 80.2 20.3 164 234-405 74-243 (694)
106 PRK10370 formate-dependent nit 98.0 0.00065 1.4E-08 66.2 19.5 152 253-416 23-180 (198)
107 PF13812 PPR_3: Pentatricopept 98.0 1E-05 2.2E-10 54.5 4.5 33 344-376 2-34 (34)
108 PRK04841 transcriptional regul 98.0 0.00079 1.7E-08 80.9 23.9 260 205-479 464-763 (903)
109 KOG0624 dsRNA-activated protei 98.0 0.001 2.2E-08 67.8 20.2 225 250-479 42-301 (504)
110 KOG1156 N-terminal acetyltrans 98.0 0.0037 8.1E-08 68.6 25.6 332 199-569 144-508 (700)
111 PRK14720 transcript cleavage f 98.0 0.00043 9.4E-09 80.5 19.6 53 247-299 32-87 (906)
112 COG5010 TadD Flp pilus assembl 97.9 0.00067 1.5E-08 67.0 17.5 155 281-439 70-227 (257)
113 PF14938 SNAP: Soluble NSF att 97.9 0.00086 1.9E-08 69.1 19.4 197 253-453 42-274 (282)
114 PF09976 TPR_21: Tetratricopep 97.9 0.00033 7.2E-09 64.5 14.1 122 314-439 14-143 (145)
115 KOG3617 WD40 and TPR repeat-co 97.8 0.00044 9.5E-09 77.1 16.0 286 255-593 737-1058(1416)
116 COG5010 TadD Flp pilus assembl 97.8 0.0023 4.9E-08 63.3 19.4 157 311-472 66-227 (257)
117 KOG3785 Uncharacterized conser 97.8 0.014 3.1E-07 59.8 24.9 208 316-550 289-508 (557)
118 KOG0985 Vesicle coat protein c 97.8 0.0026 5.6E-08 72.6 21.0 208 257-510 1059-1266(1666)
119 KOG0548 Molecular co-chaperone 97.8 0.0035 7.6E-08 67.5 21.2 132 346-479 260-424 (539)
120 PRK04841 transcriptional regul 97.8 0.0046 9.9E-08 74.3 24.9 262 254-530 460-760 (903)
121 KOG2047 mRNA splicing factor [ 97.8 0.0053 1.1E-07 67.3 22.2 263 199-476 350-651 (835)
122 COG4783 Putative Zn-dependent 97.8 0.0057 1.2E-07 65.4 22.1 114 354-472 317-433 (484)
123 TIGR00756 PPR pentatricopeptid 97.7 4.2E-05 9E-10 51.5 4.2 34 279-312 2-35 (35)
124 PF01535 PPR: PPR repeat; Int 97.7 2.8E-05 6E-10 51.1 3.1 30 345-374 2-31 (31)
125 KOG2053 Mitochondrial inherita 97.7 0.012 2.5E-07 67.0 24.5 223 200-446 16-258 (932)
126 KOG2376 Signal recognition par 97.7 0.0024 5.2E-08 69.4 18.2 288 205-508 122-507 (652)
127 TIGR02552 LcrH_SycD type III s 97.7 0.00098 2.1E-08 60.1 13.4 92 313-405 18-112 (135)
128 PF13812 PPR_3: Pentatricopept 97.7 6.9E-05 1.5E-09 50.4 4.3 33 278-310 2-34 (34)
129 KOG0624 dsRNA-activated protei 97.6 0.013 2.9E-07 59.9 21.7 225 254-482 114-376 (504)
130 KOG4162 Predicted calmodulin-b 97.6 0.012 2.6E-07 66.0 22.9 134 345-482 652-789 (799)
131 KOG2047 mRNA splicing factor [ 97.6 0.04 8.8E-07 60.7 26.3 292 256-570 148-497 (835)
132 TIGR02552 LcrH_SycD type III s 97.6 0.0015 3.1E-08 59.0 13.5 91 280-371 20-113 (135)
133 PRK14720 transcript cleavage f 97.6 0.0067 1.4E-07 70.9 21.4 81 278-371 117-197 (906)
134 PF09976 TPR_21: Tetratricopep 97.6 0.0044 9.6E-08 57.0 16.4 123 278-404 13-144 (145)
135 KOG0985 Vesicle coat protein c 97.5 0.0094 2E-07 68.3 21.0 247 205-475 1060-1340(1666)
136 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0036 7.8E-08 67.1 17.2 122 278-405 170-295 (395)
137 KOG3060 Uncharacterized conser 97.5 0.02 4.3E-07 56.6 20.4 180 260-445 26-222 (289)
138 COG4783 Putative Zn-dependent 97.5 0.0077 1.7E-07 64.4 18.9 139 322-480 316-458 (484)
139 cd00189 TPR Tetratricopeptide 97.5 0.0012 2.6E-08 53.5 10.4 88 349-439 6-93 (100)
140 PF08579 RPM2: Mitochondrial r 97.5 0.00079 1.7E-08 58.2 9.0 81 345-426 27-116 (120)
141 KOG3060 Uncharacterized conser 97.5 0.015 3.2E-07 57.4 18.8 187 290-479 25-223 (289)
142 KOG3081 Vesicle coat complex C 97.4 0.0047 1E-07 61.2 15.2 150 281-439 112-267 (299)
143 PF01535 PPR: PPR repeat; Int 97.4 0.00014 3E-09 47.6 3.1 29 279-307 2-30 (31)
144 KOG4162 Predicted calmodulin-b 97.4 0.043 9.4E-07 61.7 23.6 187 205-410 335-545 (799)
145 cd00189 TPR Tetratricopeptide 97.4 0.0021 4.5E-08 52.1 10.4 58 346-404 37-94 (100)
146 PRK02603 photosystem I assembl 97.4 0.0041 9E-08 59.0 13.8 88 312-401 35-129 (172)
147 PF14938 SNAP: Soluble NSF att 97.4 0.0048 1.1E-07 63.6 15.3 193 280-475 38-262 (282)
148 PF10037 MRP-S27: Mitochondria 97.4 0.0021 4.5E-08 69.3 12.7 118 273-390 62-185 (429)
149 PF05843 Suf: Suppressor of fo 97.3 0.00096 2.1E-08 68.7 9.5 25 450-474 110-134 (280)
150 TIGR02795 tol_pal_ybgF tol-pal 97.3 0.0022 4.8E-08 55.9 10.6 94 346-439 5-101 (119)
151 PF05843 Suf: Suppressor of fo 97.3 0.004 8.6E-08 64.1 14.0 142 313-455 2-148 (280)
152 PF06239 ECSIT: Evolutionarily 97.3 0.0027 5.9E-08 61.4 11.6 118 273-405 43-166 (228)
153 PF06239 ECSIT: Evolutionarily 97.3 0.0014 3.1E-08 63.3 9.7 97 332-429 34-153 (228)
154 KOG3785 Uncharacterized conser 97.3 0.0053 1.2E-07 62.9 13.5 193 251-450 290-497 (557)
155 PRK10153 DNA-binding transcrip 97.2 0.0056 1.2E-07 68.3 15.1 141 308-451 333-490 (517)
156 KOG4340 Uncharacterized conser 97.2 0.009 1.9E-07 60.0 14.6 159 275-439 142-335 (459)
157 KOG2041 WD40 repeat protein [G 97.2 0.015 3.2E-07 64.3 17.3 190 257-471 674-876 (1189)
158 KOG0548 Molecular co-chaperone 97.2 0.014 3.1E-07 62.9 17.1 196 280-479 227-458 (539)
159 PF10037 MRP-S27: Mitochondria 97.2 0.0034 7.3E-08 67.7 12.3 113 311-424 65-183 (429)
160 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0048 1E-07 53.8 11.1 102 379-480 3-109 (119)
161 CHL00033 ycf3 photosystem I as 97.2 0.0049 1.1E-07 58.2 12.0 61 279-339 37-99 (168)
162 PF08579 RPM2: Mitochondrial r 97.2 0.0059 1.3E-07 52.9 11.0 89 279-390 27-116 (120)
163 PF12895 Apc3: Anaphase-promot 97.2 0.0018 4E-08 53.5 7.9 79 290-368 2-83 (84)
164 PRK10153 DNA-binding transcrip 97.2 0.014 3.1E-07 65.1 17.3 139 340-480 334-486 (517)
165 PRK02603 photosystem I assembl 97.2 0.013 2.8E-07 55.6 14.7 90 278-367 36-130 (172)
166 PLN03088 SGT1, suppressor of 97.2 0.0035 7.6E-08 66.9 12.0 92 352-447 11-103 (356)
167 KOG1130 Predicted G-alpha GTPa 97.1 0.0018 3.9E-08 67.4 8.9 247 253-509 24-331 (639)
168 PF04840 Vps16_C: Vps16, C-ter 97.1 0.36 7.9E-06 50.5 26.2 121 406-570 169-289 (319)
169 KOG1127 TPR repeat-containing 97.1 0.011 2.4E-07 67.8 15.6 173 261-439 473-655 (1238)
170 PLN03088 SGT1, suppressor of 97.1 0.0076 1.6E-07 64.3 13.9 100 284-386 9-111 (356)
171 KOG1538 Uncharacterized conser 97.1 0.01 2.2E-07 65.0 14.5 253 251-569 561-843 (1081)
172 PRK15363 pathogenicity island 97.0 0.016 3.4E-07 53.7 13.3 90 317-407 40-132 (157)
173 KOG0553 TPR repeat-containing 97.0 0.0045 9.8E-08 62.4 10.4 100 351-455 89-190 (304)
174 KOG1914 mRNA cleavage and poly 97.0 0.058 1.3E-06 58.5 18.8 182 294-478 310-503 (656)
175 CHL00033 ycf3 photosystem I as 97.0 0.01 2.2E-07 55.9 12.1 75 248-323 37-117 (168)
176 COG0457 NrfG FOG: TPR repeat [ 96.9 0.31 6.7E-06 45.7 22.3 218 259-478 36-267 (291)
177 KOG1127 TPR repeat-containing 96.9 0.013 2.9E-07 67.2 14.0 176 293-475 474-658 (1238)
178 PRK15363 pathogenicity island 96.9 0.011 2.4E-07 54.6 11.1 105 333-442 24-131 (157)
179 KOG2053 Mitochondrial inherita 96.8 1.1 2.4E-05 51.6 28.0 218 256-476 19-255 (932)
180 PF12895 Apc3: Anaphase-promot 96.8 0.0026 5.6E-08 52.6 5.9 47 357-403 3-50 (84)
181 KOG0553 TPR repeat-containing 96.8 0.012 2.7E-07 59.3 11.4 97 286-385 90-189 (304)
182 PF12688 TPR_5: Tetratrico pep 96.8 0.028 6.2E-07 49.9 12.3 108 349-458 7-117 (120)
183 KOG1914 mRNA cleavage and poly 96.8 0.05 1.1E-06 58.9 16.1 175 263-441 310-499 (656)
184 COG5107 RNA14 Pre-mRNA 3'-end 96.7 0.12 2.6E-06 54.9 17.8 135 341-479 395-534 (660)
185 PF04840 Vps16_C: Vps16, C-ter 96.7 0.24 5.2E-06 51.9 20.4 103 345-466 179-281 (319)
186 PF12688 TPR_5: Tetratrico pep 96.6 0.048 1E-06 48.5 12.8 88 284-371 8-103 (120)
187 PF13281 DUF4071: Domain of un 96.6 0.13 2.9E-06 54.5 17.9 164 314-480 143-338 (374)
188 PRK10866 outer membrane biogen 96.6 0.12 2.5E-06 52.1 16.8 178 276-474 31-239 (243)
189 KOG2796 Uncharacterized conser 96.4 0.099 2.1E-06 52.0 14.4 137 344-481 178-320 (366)
190 PRK10803 tol-pal system protei 96.4 0.023 5.1E-07 57.7 10.6 100 345-446 145-249 (263)
191 PF13525 YfiO: Outer membrane 96.4 0.21 4.5E-06 48.8 16.9 45 420-464 147-195 (203)
192 COG4700 Uncharacterized protei 96.4 0.42 9.2E-06 45.3 17.6 121 309-434 86-213 (251)
193 PRK10866 outer membrane biogen 96.4 0.32 6.9E-06 48.9 18.4 176 249-439 35-237 (243)
194 COG4700 Uncharacterized protei 96.3 0.49 1.1E-05 44.9 17.7 128 341-468 87-214 (251)
195 PF13424 TPR_12: Tetratricopep 96.3 0.02 4.4E-07 46.3 7.6 24 380-403 48-71 (78)
196 COG3898 Uncharacterized membra 96.2 1.5 3.3E-05 46.2 22.4 246 205-475 132-391 (531)
197 PF03704 BTAD: Bacterial trans 96.2 0.069 1.5E-06 48.9 11.8 71 345-416 64-138 (146)
198 PF08631 SPO22: Meiosis protei 96.2 1.3 2.8E-05 45.5 22.3 220 205-439 5-271 (278)
199 COG0457 NrfG FOG: TPR repeat [ 96.2 1.1 2.3E-05 41.9 21.5 196 247-446 60-268 (291)
200 PF13432 TPR_16: Tetratricopep 96.2 0.023 4.9E-07 44.2 7.3 24 346-369 34-57 (65)
201 PF03704 BTAD: Bacterial trans 96.2 0.056 1.2E-06 49.5 11.0 69 313-381 63-139 (146)
202 KOG2796 Uncharacterized conser 96.1 0.24 5.2E-06 49.3 15.3 138 314-453 179-325 (366)
203 PF13432 TPR_16: Tetratricopep 96.1 0.019 4E-07 44.7 6.3 59 421-479 4-63 (65)
204 KOG2041 WD40 repeat protein [G 96.1 0.76 1.6E-05 51.4 20.2 85 253-337 767-877 (1189)
205 PRK10803 tol-pal system protei 95.9 0.089 1.9E-06 53.6 12.1 96 312-407 143-246 (263)
206 PF14559 TPR_19: Tetratricopep 95.9 0.021 4.6E-07 44.7 6.0 49 356-405 4-52 (68)
207 PF14559 TPR_19: Tetratricopep 95.9 0.013 2.9E-07 45.8 4.8 64 389-455 2-66 (68)
208 PF13414 TPR_11: TPR repeat; P 95.9 0.029 6.2E-07 44.1 6.8 26 346-371 6-31 (69)
209 PF13525 YfiO: Outer membrane 95.9 0.58 1.3E-05 45.6 17.4 178 249-435 8-199 (203)
210 PF13414 TPR_11: TPR repeat; P 95.9 0.025 5.4E-07 44.4 6.3 60 278-338 4-64 (69)
211 PF04184 ST7: ST7 protein; In 95.8 0.48 1E-05 51.4 17.2 55 385-439 266-320 (539)
212 KOG2280 Vacuolar assembly/sort 95.7 2.3 4.9E-05 48.3 22.3 308 251-600 442-800 (829)
213 PF13281 DUF4071: Domain of un 95.7 0.25 5.4E-06 52.4 14.5 169 348-530 146-334 (374)
214 KOG1130 Predicted G-alpha GTPa 95.7 0.025 5.4E-07 59.2 6.7 257 205-476 29-344 (639)
215 PF13424 TPR_12: Tetratricopep 95.7 0.02 4.4E-07 46.3 5.0 59 312-370 5-73 (78)
216 KOG1538 Uncharacterized conser 95.7 0.095 2.1E-06 57.8 11.3 84 380-474 749-844 (1081)
217 PF12921 ATP13: Mitochondrial 95.6 0.084 1.8E-06 47.4 9.2 52 373-424 47-98 (126)
218 PLN03098 LPA1 LOW PSII ACCUMUL 95.6 0.12 2.5E-06 55.8 11.8 61 278-340 76-140 (453)
219 KOG0550 Molecular chaperone (D 95.6 0.87 1.9E-05 48.2 17.7 115 258-372 215-350 (486)
220 PF10300 DUF3808: Protein of u 95.5 0.57 1.2E-05 51.9 17.0 23 384-406 311-333 (468)
221 KOG2199 Signal transducing ada 95.4 0.029 6.3E-07 58.2 6.0 8 74-81 400-407 (462)
222 KOG3941 Intermediate in Toll s 95.3 0.077 1.7E-06 53.2 8.5 98 331-429 53-173 (406)
223 COG5107 RNA14 Pre-mRNA 3'-end 95.1 0.25 5.5E-06 52.5 11.8 56 280-336 400-456 (660)
224 smart00299 CLH Clathrin heavy 95.1 0.93 2E-05 41.1 14.6 44 281-325 11-54 (140)
225 smart00299 CLH Clathrin heavy 95.0 0.58 1.3E-05 42.4 12.9 122 316-458 11-136 (140)
226 PF13371 TPR_9: Tetratricopept 95.0 0.073 1.6E-06 42.2 6.2 56 423-478 4-60 (73)
227 PF13371 TPR_9: Tetratricopept 94.8 0.085 1.8E-06 41.8 6.2 53 352-405 4-56 (73)
228 PLN03098 LPA1 LOW PSII ACCUMUL 94.8 0.84 1.8E-05 49.3 15.0 65 242-306 71-141 (453)
229 KOG3941 Intermediate in Toll s 94.7 0.66 1.4E-05 46.7 13.0 118 274-406 64-187 (406)
230 COG3898 Uncharacterized membra 94.7 7.1 0.00015 41.3 23.0 187 259-451 97-300 (531)
231 PRK11906 transcriptional regul 94.6 1.9 4.1E-05 46.7 17.3 154 313-471 252-431 (458)
232 PF04184 ST7: ST7 protein; In 94.4 1.3 2.7E-05 48.3 15.3 143 251-405 173-322 (539)
233 COG4105 ComL DNA uptake lipopr 94.4 2.8 6.2E-05 41.9 16.7 60 420-479 173-236 (254)
234 KOG1585 Protein required for f 94.3 1 2.3E-05 44.5 13.2 193 253-470 38-250 (308)
235 KOG0550 Molecular chaperone (D 94.3 0.49 1.1E-05 50.0 11.6 163 278-446 169-353 (486)
236 PF10300 DUF3808: Protein of u 94.3 1 2.2E-05 50.0 14.9 180 293-478 173-378 (468)
237 PF13170 DUF4003: Protein of u 94.0 0.95 2E-05 46.9 13.2 126 293-421 78-224 (297)
238 COG4235 Cytochrome c biogenesi 93.9 0.81 1.7E-05 46.6 12.0 108 310-422 154-268 (287)
239 COG4105 ComL DNA uptake lipopr 93.9 3.7 7.9E-05 41.1 16.4 166 205-405 46-231 (254)
240 PRK15331 chaperone protein Sic 93.9 1.2 2.6E-05 41.6 12.2 81 324-405 49-132 (165)
241 PF12921 ATP13: Mitochondrial 93.8 0.98 2.1E-05 40.5 11.3 22 249-270 5-26 (126)
242 COG4235 Cytochrome c biogenesi 93.8 3 6.5E-05 42.6 15.8 111 342-456 155-269 (287)
243 KOG1941 Acetylcholine receptor 93.7 1.6 3.5E-05 45.5 13.8 192 251-442 48-274 (518)
244 PF04053 Coatomer_WDAD: Coatom 93.7 0.53 1.1E-05 51.6 11.3 123 324-472 273-398 (443)
245 COG1729 Uncharacterized protei 93.7 0.57 1.2E-05 47.1 10.4 101 346-447 145-248 (262)
246 PF04053 Coatomer_WDAD: Coatom 93.4 1.2 2.5E-05 48.9 13.3 157 253-439 268-427 (443)
247 KOG1920 IkappaB kinase complex 93.4 4.7 0.0001 48.1 18.4 126 326-473 894-1025(1265)
248 PRK11906 transcriptional regul 93.2 1.7 3.7E-05 47.1 13.7 159 344-524 252-430 (458)
249 KOG2280 Vacuolar assembly/sort 93.1 10 0.00022 43.3 19.8 101 398-525 668-768 (829)
250 KOG1464 COP9 signalosome, subu 93.1 2.8 6.1E-05 42.1 13.9 238 205-464 39-320 (440)
251 KOG2610 Uncharacterized conser 93.0 3.2 6.8E-05 43.0 14.5 112 355-469 115-231 (491)
252 KOG4555 TPR repeat-containing 92.8 1.8 3.9E-05 38.8 10.8 87 286-373 52-145 (175)
253 COG3118 Thioredoxin domain-con 92.7 9.1 0.0002 39.2 17.3 152 284-439 141-297 (304)
254 PF13170 DUF4003: Protein of u 92.7 2.6 5.7E-05 43.7 14.0 122 359-482 78-214 (297)
255 COG2909 MalT ATP-dependent tra 92.7 15 0.00032 42.9 20.8 225 200-439 422-684 (894)
256 PF09205 DUF1955: Domain of un 92.5 7.5 0.00016 35.0 14.4 64 345-410 88-151 (161)
257 KOG1920 IkappaB kinase complex 92.2 1.7 3.7E-05 51.6 12.9 105 280-401 942-1049(1265)
258 KOG0543 FKBP-type peptidyl-pro 92.2 1.4 3.1E-05 46.6 11.2 87 318-405 214-318 (397)
259 KOG1924 RhoA GTPase effector D 92.0 27 0.0006 40.1 24.6 19 445-463 836-854 (1102)
260 COG1729 Uncharacterized protei 91.9 1.4 3.1E-05 44.3 10.5 94 314-408 144-245 (262)
261 PRK15331 chaperone protein Sic 91.9 1.4 3E-05 41.2 9.6 89 282-371 42-133 (165)
262 PF07079 DUF1347: Protein of u 91.7 13 0.00027 40.3 17.5 121 353-479 389-524 (549)
263 PF07079 DUF1347: Protein of u 91.7 2.8 6E-05 45.1 12.7 132 255-390 15-179 (549)
264 KOG0543 FKBP-type peptidyl-pro 91.6 2.8 6E-05 44.5 12.6 122 284-407 215-355 (397)
265 PF10602 RPN7: 26S proteasome 91.2 2 4.3E-05 41.0 10.4 58 313-370 37-100 (177)
266 PF13388 DUF4106: Protein of u 91.1 0.44 9.5E-06 47.6 5.8 21 57-77 170-190 (422)
267 KOG2610 Uncharacterized conser 91.1 9.4 0.0002 39.7 15.3 131 275-405 135-274 (491)
268 KOG2114 Vacuolar assembly/sort 91.1 12 0.00025 43.4 17.5 176 248-442 336-517 (933)
269 PF13512 TPR_18: Tetratricopep 90.9 3.4 7.3E-05 37.8 10.9 50 323-372 21-76 (142)
270 COG2909 MalT ATP-dependent tra 90.9 34 0.00074 40.1 21.1 179 257-439 426-643 (894)
271 PF13512 TPR_18: Tetratricopep 90.9 2 4.4E-05 39.2 9.4 54 353-406 20-75 (142)
272 PRK10263 DNA translocase FtsK; 90.3 0.82 1.8E-05 55.4 8.1 47 556-604 1292-1339(1355)
273 KOG4555 TPR repeat-containing 90.3 1.8 3.9E-05 38.8 8.2 89 387-478 52-146 (175)
274 COG3947 Response regulator con 89.7 14 0.0003 37.8 14.9 163 311-475 121-341 (361)
275 COG3629 DnrI DNA-binding trans 89.6 2.6 5.7E-05 43.0 10.1 75 313-387 154-236 (280)
276 PRK12798 chemotaxis protein; R 89.4 34 0.00074 36.8 19.0 153 325-480 125-290 (421)
277 KOG1585 Protein required for f 89.3 25 0.00055 35.1 18.8 213 262-507 9-242 (308)
278 PF04190 DUF410: Protein of un 89.0 27 0.00058 35.5 17.1 139 254-407 18-170 (260)
279 KOG1464 COP9 signalosome, subu 89.0 28 0.00061 35.2 18.9 191 291-481 41-266 (440)
280 PF10602 RPN7: 26S proteasome 88.7 5.5 0.00012 37.9 11.2 95 345-439 38-138 (177)
281 PF13176 TPR_7: Tetratricopept 88.7 0.9 1.9E-05 30.8 4.2 25 346-370 2-26 (36)
282 PHA02875 ankyrin repeat protei 88.5 15 0.00033 39.7 16.1 207 252-478 5-226 (413)
283 KOG0307 Vesicle coat complex C 88.2 31 0.00066 41.2 18.4 35 270-304 989-1024(1049)
284 COG4649 Uncharacterized protei 88.1 5.6 0.00012 37.5 10.2 116 323-439 69-192 (221)
285 COG3118 Thioredoxin domain-con 88.0 23 0.00049 36.4 15.3 143 318-464 140-289 (304)
286 PF09613 HrpB1_HrpK: Bacterial 87.9 14 0.00031 34.4 12.8 108 286-398 19-129 (160)
287 TIGR02561 HrpB1_HrpK type III 87.8 8.6 0.00019 35.4 11.0 90 289-380 22-114 (153)
288 KOG2114 Vacuolar assembly/sort 87.6 17 0.00036 42.2 15.5 204 247-466 284-509 (933)
289 KOG2236 Uncharacterized conser 87.5 1.4 3.1E-05 47.0 6.7 9 85-93 409-417 (483)
290 KOG0403 Neoplastic transformat 87.4 11 0.00023 40.6 13.0 74 419-508 514-589 (645)
291 COG1747 Uncharacterized N-term 87.4 51 0.0011 36.4 19.8 181 274-459 63-251 (711)
292 KOG4368 Predicted RNA binding 86.8 4 8.7E-05 44.8 9.7 27 67-93 300-326 (757)
293 COG4649 Uncharacterized protei 86.2 26 0.00055 33.3 13.3 131 276-407 58-196 (221)
294 PF13176 TPR_7: Tetratricopept 86.1 1.4 3E-05 29.9 3.9 26 314-339 1-26 (36)
295 KOG1941 Acetylcholine receptor 86.0 48 0.001 35.0 16.5 126 280-405 125-273 (518)
296 PF08631 SPO22: Meiosis protei 85.3 47 0.001 33.9 25.6 213 257-473 4-272 (278)
297 PF07035 Mic1: Colon cancer-as 85.2 34 0.00074 32.2 15.7 55 419-475 94-148 (167)
298 KOG0687 26S proteasome regulat 84.5 17 0.00036 37.7 12.3 38 380-417 106-146 (393)
299 PF07035 Mic1: Colon cancer-as 84.3 36 0.00077 32.1 13.7 128 268-405 20-147 (167)
300 PF14669 Asp_Glu_race_2: Putat 83.8 29 0.00062 33.4 12.7 168 272-439 3-206 (233)
301 COG1747 Uncharacterized N-term 83.5 73 0.0016 35.2 17.1 166 310-482 64-240 (711)
302 PF00637 Clathrin: Region in C 83.4 0.31 6.7E-06 44.3 -0.4 53 284-336 14-66 (143)
303 PF13388 DUF4106: Protein of u 82.8 2.5 5.5E-05 42.4 5.6 22 260-281 285-307 (422)
304 COG3629 DnrI DNA-binding trans 82.4 8.7 0.00019 39.3 9.5 76 344-420 154-233 (280)
305 PF09205 DUF1955: Domain of un 82.4 19 0.00041 32.5 10.3 56 382-439 90-145 (161)
306 KOG0276 Vesicle coat complex C 82.3 3.5 7.7E-05 45.7 6.9 99 353-475 596-694 (794)
307 PF04097 Nic96: Nup93/Nic96; 82.2 16 0.00034 42.1 12.7 67 246-312 111-187 (613)
308 PF13428 TPR_14: Tetratricopep 82.1 3.9 8.5E-05 28.9 5.1 28 279-306 3-30 (44)
309 PF13428 TPR_14: Tetratricopep 82.0 5.3 0.00011 28.2 5.7 27 346-372 4-30 (44)
310 KOG4234 TPR repeat-containing 81.6 22 0.00049 34.4 11.2 89 353-447 105-201 (271)
311 KOG0276 Vesicle coat complex C 81.3 31 0.00068 38.7 13.6 150 257-439 597-746 (794)
312 COG2976 Uncharacterized protei 80.8 56 0.0012 31.6 14.3 126 278-407 55-188 (207)
313 PF13374 TPR_10: Tetratricopep 80.7 3.2 7E-05 28.3 4.2 27 345-371 4-30 (42)
314 PF04190 DUF410: Protein of un 80.7 52 0.0011 33.4 14.6 151 258-439 2-166 (260)
315 KOG2066 Vacuolar assembly/sort 80.7 95 0.002 36.1 17.4 90 360-462 611-705 (846)
316 KOG4648 Uncharacterized conser 80.7 3.9 8.5E-05 42.4 6.2 93 351-447 105-198 (536)
317 PF13929 mRNA_stabil: mRNA sta 80.2 75 0.0016 32.6 18.7 110 356-465 141-256 (292)
318 PF02259 FAT: FAT domain; Int 80.1 80 0.0017 32.9 17.3 51 253-305 5-57 (352)
319 PF02259 FAT: FAT domain; Int 79.9 76 0.0016 33.0 16.3 32 446-477 145-176 (352)
320 KOG1883 Cofactor required for 79.9 0.57 1.2E-05 54.9 0.0 19 118-136 1468-1486(1517)
321 KOG0687 26S proteasome regulat 79.8 42 0.00091 34.9 13.1 95 345-442 106-209 (393)
322 KOG4570 Uncharacterized conser 79.6 14 0.00031 38.0 9.8 100 307-407 59-164 (418)
323 PF13374 TPR_10: Tetratricopep 79.5 3.7 7.9E-05 28.0 4.2 28 312-339 2-29 (42)
324 PF00637 Clathrin: Region in C 79.2 1.4 3E-05 40.0 2.4 83 349-439 13-95 (143)
325 PF02284 COX5A: Cytochrome c o 79.2 9.6 0.00021 32.6 7.1 61 361-423 28-88 (108)
326 PF11768 DUF3312: Protein of u 79.0 24 0.00052 39.2 12.0 128 315-467 411-543 (545)
327 cd00923 Cyt_c_Oxidase_Va Cytoc 79.0 9.4 0.0002 32.4 6.9 63 358-422 22-84 (103)
328 PF13431 TPR_17: Tetratricopep 79.0 1.4 3E-05 29.6 1.7 26 441-466 6-32 (34)
329 PF13431 TPR_17: Tetratricopep 79.0 2.7 5.9E-05 28.1 3.1 22 311-332 12-33 (34)
330 COG2976 Uncharacterized protei 78.5 28 0.00061 33.6 10.8 88 283-373 95-189 (207)
331 PRK10263 DNA translocase FtsK; 78.3 4.2 9.1E-05 49.6 6.5 9 43-51 727-735 (1355)
332 KOG4648 Uncharacterized conser 78.2 12 0.00026 39.0 8.8 53 253-305 104-159 (536)
333 KOG1258 mRNA processing protei 77.0 99 0.0021 34.8 16.0 181 311-507 296-489 (577)
334 KOG1586 Protein required for f 77.0 83 0.0018 31.4 19.5 108 271-379 67-190 (288)
335 KOG2066 Vacuolar assembly/sort 76.2 1.6E+02 0.0035 34.3 21.7 98 251-355 361-467 (846)
336 PF13929 mRNA_stabil: mRNA sta 75.9 1E+02 0.0022 31.8 14.7 114 326-439 142-263 (292)
337 PF00515 TPR_1: Tetratricopept 75.5 7.1 0.00015 25.5 4.5 27 345-371 3-29 (34)
338 KOG1258 mRNA processing protei 75.4 1.5E+02 0.0032 33.5 22.8 317 257-600 90-471 (577)
339 KOG1586 Protein required for f 75.1 93 0.002 31.0 14.7 56 426-482 166-230 (288)
340 KOG1550 Extracellular protein 75.0 1.6E+02 0.0034 33.5 17.8 179 293-479 228-429 (552)
341 COG4455 ImpE Protein of avirul 74.9 9.7 0.00021 37.3 6.7 74 380-456 3-81 (273)
342 PF13762 MNE1: Mitochondrial s 74.8 69 0.0015 29.4 12.6 92 303-394 28-131 (145)
343 PF09613 HrpB1_HrpK: Bacterial 74.8 67 0.0015 30.0 12.1 47 390-439 22-69 (160)
344 KOG3561 Aryl-hydrocarbon recep 74.4 4.4 9.6E-05 47.1 5.1 16 57-72 702-717 (803)
345 KOG4279 Serine/threonine prote 74.3 21 0.00046 40.8 10.0 170 297-480 183-399 (1226)
346 COG4785 NlpI Lipoprotein NlpI, 74.3 94 0.002 30.7 13.8 191 261-475 61-265 (297)
347 KOG2396 HAT (Half-A-TPR) repea 73.7 1.3E+02 0.0029 33.2 15.5 206 257-475 332-558 (568)
348 PF00515 TPR_1: Tetratricopept 73.6 8.5 0.00018 25.1 4.5 30 449-478 3-32 (34)
349 KOG3807 Predicted membrane pro 73.4 1.2E+02 0.0027 31.6 17.1 48 389-436 286-333 (556)
350 KOG4592 Uncharacterized conser 72.1 4.9 0.00011 44.5 4.5 18 205-222 257-274 (728)
351 TIGR02561 HrpB1_HrpK type III 71.6 41 0.00089 31.0 9.6 47 390-442 22-71 (153)
352 PF07719 TPR_2: Tetratricopept 71.1 11 0.00024 24.3 4.6 29 450-478 4-32 (34)
353 KOG2391 Vacuolar sorting prote 70.6 46 0.001 34.6 10.7 29 345-373 301-329 (365)
354 KOG2300 Uncharacterized conser 69.8 1.8E+02 0.0039 32.1 16.0 145 258-402 335-509 (629)
355 COG5159 RPN6 26S proteasome re 69.1 88 0.0019 32.1 12.1 52 283-334 9-67 (421)
356 KOG2300 Uncharacterized conser 69.0 1.9E+02 0.0041 32.0 18.0 88 390-480 335-434 (629)
357 TIGR02508 type_III_yscG type I 68.9 28 0.0006 29.8 7.3 25 324-348 51-75 (115)
358 PF11207 DUF2989: Protein of u 68.5 36 0.00078 33.0 9.1 79 354-434 118-198 (203)
359 PF04097 Nic96: Nup93/Nic96; 68.2 1.2E+02 0.0027 34.8 15.1 31 414-445 500-535 (613)
360 KOG4234 TPR repeat-containing 68.2 28 0.0006 33.8 8.0 95 386-480 103-201 (271)
361 KOG1924 RhoA GTPase effector D 68.1 13 0.00028 42.6 6.8 19 200-219 644-662 (1102)
362 PF13181 TPR_8: Tetratricopept 67.5 13 0.00028 24.1 4.3 27 345-371 3-29 (34)
363 PF13934 ELYS: Nuclear pore co 67.4 57 0.0012 32.3 10.7 20 283-302 114-133 (226)
364 PF04910 Tcf25: Transcriptiona 67.3 1.2E+02 0.0027 32.3 13.9 126 206-338 7-165 (360)
365 KOG2063 Vacuolar assembly/sort 67.2 2.8E+02 0.006 33.3 18.6 17 205-221 358-374 (877)
366 PRK09687 putative lyase; Provi 67.2 1.6E+02 0.0034 30.3 23.4 217 274-529 34-262 (280)
367 PF07719 TPR_2: Tetratricopept 67.0 13 0.00027 24.0 4.2 27 345-371 3-29 (34)
368 PF10345 Cohesin_load: Cohesin 66.7 1.5E+02 0.0033 34.0 15.6 157 248-405 61-252 (608)
369 PF10255 Paf67: RNA polymerase 65.7 2E+02 0.0044 31.1 16.1 28 249-276 78-105 (404)
370 KOG1550 Extracellular protein 65.5 1.7E+02 0.0036 33.3 15.3 145 256-405 259-424 (552)
371 KOG0686 COP9 signalosome, subu 64.6 1.5E+02 0.0032 32.0 13.2 60 279-339 152-214 (466)
372 COG5290 IkappaB kinase complex 64.6 2.9E+02 0.0062 32.5 18.4 48 252-299 897-944 (1243)
373 COG5602 SIN3 Histone deacetyla 64.2 2.4E+02 0.0051 33.4 15.6 15 206-220 266-280 (1163)
374 PF13181 TPR_8: Tetratricopept 64.0 12 0.00025 24.3 3.6 30 449-478 3-32 (34)
375 PHA02875 ankyrin repeat protei 62.9 2.2E+02 0.0048 30.5 16.9 175 251-439 37-224 (413)
376 TIGR02270 conserved hypothetic 62.6 2.4E+02 0.0051 30.8 22.6 195 251-463 43-239 (410)
377 cd08819 CARD_MDA5_2 Caspase ac 62.6 46 0.00099 27.7 7.3 66 296-363 21-86 (88)
378 PF10345 Cohesin_load: Cohesin 62.5 2.9E+02 0.0062 31.8 17.5 177 296-473 40-251 (608)
379 PF10579 Rapsyn_N: Rapsyn N-te 62.3 20 0.00043 29.2 5.1 46 355-400 18-65 (80)
380 COG4455 ImpE Protein of avirul 62.3 35 0.00077 33.5 7.7 58 280-338 4-61 (273)
381 KOG2908 26S proteasome regulat 61.4 82 0.0018 33.0 10.5 84 316-399 79-178 (380)
382 KOG0686 COP9 signalosome, subu 61.4 2.1E+02 0.0045 30.9 13.6 182 312-506 150-357 (466)
383 PF13934 ELYS: Nuclear pore co 61.3 1.1E+02 0.0023 30.4 11.3 107 345-461 78-186 (226)
384 PRK15180 Vi polysaccharide bio 61.2 1.7E+02 0.0037 32.2 13.1 84 389-475 300-385 (831)
385 PRK09687 putative lyase; Provi 61.1 2E+02 0.0043 29.5 26.0 214 248-476 39-263 (280)
386 KOG3807 Predicted membrane pro 61.1 2.2E+02 0.0047 29.9 15.7 46 324-369 287-337 (556)
387 KOG0307 Vesicle coat complex C 61.1 1.3E+02 0.0029 36.1 13.4 40 300-339 985-1024(1049)
388 PF07721 TPR_4: Tetratricopept 60.7 14 0.0003 22.9 3.2 20 317-336 6-25 (26)
389 KOG4279 Serine/threonine prote 60.7 42 0.00091 38.6 8.9 124 330-456 181-332 (1226)
390 KOG0890 Protein kinase of the 60.4 5.4E+02 0.012 34.2 20.8 145 251-402 1388-1542(2382)
391 PF07163 Pex26: Pex26 protein; 60.3 71 0.0015 32.6 9.7 89 350-439 90-183 (309)
392 COG5187 RPN7 26S proteasome re 60.1 2.1E+02 0.0046 29.5 13.1 97 345-442 117-220 (412)
393 COG3947 Response regulator con 59.8 88 0.0019 32.2 10.2 71 345-416 281-355 (361)
394 smart00028 TPR Tetratricopepti 59.8 10 0.00022 22.9 2.7 19 421-439 8-26 (34)
395 PF11207 DUF2989: Protein of u 59.6 58 0.0013 31.6 8.7 76 321-398 116-198 (203)
396 KOG2422 Uncharacterized conser 59.2 3.1E+02 0.0067 31.0 16.1 144 205-355 250-427 (665)
397 PRK13342 recombination factor 59.0 1.9E+02 0.0041 31.4 13.9 43 346-388 230-275 (413)
398 PHA02878 ankyrin repeat protei 58.9 2.6E+02 0.0057 30.8 15.3 79 253-336 41-122 (477)
399 KOG4849 mRNA cleavage factor I 58.7 82 0.0018 32.8 9.9 11 258-268 385-395 (498)
400 PRK11619 lytic murein transgly 58.1 3.5E+02 0.0077 31.4 19.5 57 418-475 316-374 (644)
401 PF10366 Vps39_1: Vacuolar sor 57.8 43 0.00094 29.0 6.9 27 345-371 41-67 (108)
402 KOG3598 Thyroid hormone recept 56.4 1.4 3.1E-05 52.9 -3.3 7 35-41 2068-2074(2220)
403 COG2178 Predicted RNA-binding 55.9 2E+02 0.0043 27.8 11.8 58 315-372 32-98 (204)
404 KOG4570 Uncharacterized conser 55.8 1.1E+02 0.0024 31.8 10.2 94 345-441 66-162 (418)
405 KOG2062 26S proteasome regulat 55.3 2.2E+02 0.0048 33.1 13.3 217 287-529 405-634 (929)
406 PRK10564 maltose regulon perip 55.3 21 0.00045 36.8 5.1 38 345-382 259-296 (303)
407 PF06552 TOM20_plant: Plant sp 55.2 36 0.00078 32.4 6.3 26 431-456 97-122 (186)
408 TIGR02508 type_III_yscG type I 54.7 86 0.0019 27.0 7.7 49 352-406 48-96 (115)
409 PF13174 TPR_6: Tetratricopept 54.6 20 0.00044 22.8 3.4 22 350-371 7-28 (33)
410 PF10579 Rapsyn_N: Rapsyn N-te 54.5 24 0.00052 28.8 4.3 42 324-365 18-65 (80)
411 PF04762 IKI3: IKI3 family; I 54.5 2.8E+02 0.006 33.8 15.2 123 248-372 696-843 (928)
412 PF07223 DUF1421: Protein of u 53.7 1.5E+02 0.0033 31.5 11.3 36 276-311 317-353 (358)
413 KOG0292 Vesicle coat complex C 53.4 27 0.00058 40.8 6.1 96 356-476 606-701 (1202)
414 PF08311 Mad3_BUB1_I: Mad3/BUB 53.3 1.4E+02 0.0029 26.6 9.6 72 263-337 50-124 (126)
415 KOG4642 Chaperone-dependent E3 53.2 2.1E+02 0.0046 28.7 11.4 118 286-405 19-144 (284)
416 PF09670 Cas_Cas02710: CRISPR- 53.0 1.5E+02 0.0032 31.9 11.6 55 352-407 140-198 (379)
417 PF02284 COX5A: Cytochrome c o 52.9 78 0.0017 27.3 7.3 44 296-339 29-72 (108)
418 cd00923 Cyt_c_Oxidase_Va Cytoc 52.9 48 0.001 28.2 6.0 45 295-339 25-69 (103)
419 PHA03247 large tegument protei 52.6 1.8E+02 0.0038 38.8 13.1 8 280-287 3111-3118(3151)
420 TIGR03504 FimV_Cterm FimV C-te 52.3 24 0.00052 25.3 3.6 24 349-372 5-28 (44)
421 TIGR01628 PABP-1234 polyadenyl 52.2 40 0.00087 38.3 7.5 9 261-269 553-561 (562)
422 PHA03100 ankyrin repeat protei 51.3 1.5E+02 0.0032 32.6 11.8 177 251-439 37-239 (480)
423 PF07163 Pex26: Pex26 protein; 51.0 1E+02 0.0023 31.5 9.1 83 251-335 88-181 (309)
424 KOG1676 K-homology type RNA bi 50.9 83 0.0018 35.3 9.1 30 34-63 358-395 (600)
425 PF10475 DUF2450: Protein of u 50.5 1.2E+02 0.0025 31.4 10.0 115 317-438 103-221 (291)
426 PF13174 TPR_6: Tetratricopept 50.5 24 0.00052 22.4 3.3 25 383-407 5-29 (33)
427 PF04034 DUF367: Domain of unk 48.8 76 0.0017 28.4 7.0 60 414-474 66-126 (127)
428 TIGR01628 PABP-1234 polyadenyl 48.8 35 0.00076 38.7 6.3 9 40-48 353-361 (562)
429 PF14689 SPOB_a: Sensor_kinase 48.5 49 0.0011 25.5 5.2 26 345-370 25-50 (62)
430 PF06552 TOM20_plant: Plant sp 47.8 1.3E+02 0.0029 28.7 8.9 39 359-405 96-134 (186)
431 PRK15180 Vi polysaccharide bio 47.8 3.6E+02 0.0078 29.8 13.0 113 290-405 302-418 (831)
432 KOG1883 Cofactor required for 47.8 4.7 0.0001 47.8 -0.9 7 43-49 1377-1383(1517)
433 KOG1498 26S proteasome regulat 47.7 3.9E+02 0.0085 28.8 16.2 84 384-476 137-241 (439)
434 KOG1524 WD40 repeat-containing 47.4 75 0.0016 35.2 7.9 73 413-504 572-644 (737)
435 KOG2659 LisH motif-containing 47.1 1.2E+02 0.0026 30.1 8.7 92 345-439 28-128 (228)
436 PF11817 Foie-gras_1: Foie gra 46.8 99 0.0022 31.0 8.6 20 350-369 185-204 (247)
437 PF12069 DUF3549: Protein of u 46.8 3.8E+02 0.0082 28.4 13.1 174 272-459 121-310 (340)
438 PF09670 Cas_Cas02710: CRISPR- 46.7 1.9E+02 0.0041 31.1 11.2 59 284-343 138-200 (379)
439 PF10255 Paf67: RNA polymerase 45.8 71 0.0015 34.6 7.6 57 314-370 124-191 (404)
440 PF14853 Fis1_TPR_C: Fis1 C-te 45.5 61 0.0013 24.2 5.1 30 452-481 6-35 (53)
441 COG4785 NlpI Lipoprotein NlpI, 45.5 3.2E+02 0.0069 27.1 15.1 163 272-442 93-265 (297)
442 PF11846 DUF3366: Domain of un 45.1 98 0.0021 29.5 8.0 32 308-339 140-171 (193)
443 PF02162 XYPPX: XYPPX repeat ( 45.0 16 0.00035 19.6 1.3 6 118-123 3-8 (15)
444 COG0790 FOG: TPR repeat, SEL1 44.0 3.6E+02 0.0077 27.3 20.0 81 259-342 54-143 (292)
445 PF11848 DUF3368: Domain of un 43.8 77 0.0017 23.0 5.3 34 353-386 12-45 (48)
446 cd00280 TRFH Telomeric Repeat 43.7 2.7E+02 0.0058 26.8 10.1 41 420-461 117-157 (200)
447 smart00638 LPD_N Lipoprotein N 43.4 5.4E+02 0.012 29.2 19.9 226 246-474 309-574 (574)
448 KOG1498 26S proteasome regulat 43.4 4.5E+02 0.0098 28.3 14.3 172 259-439 25-237 (439)
449 PRK10564 maltose regulon perip 43.4 47 0.001 34.3 5.5 43 273-315 252-295 (303)
450 KOG4507 Uncharacterized conser 43.3 51 0.0011 36.9 6.1 147 310-458 569-721 (886)
451 PF11838 ERAP1_C: ERAP1-like C 43.1 3.9E+02 0.0083 27.4 19.5 81 394-475 146-229 (324)
452 TIGR03504 FimV_Cterm FimV C-te 42.6 35 0.00076 24.4 3.2 25 283-307 5-29 (44)
453 KOG2034 Vacuolar sorting prote 42.2 5.1E+02 0.011 30.8 13.9 168 285-470 366-553 (911)
454 PF07064 RIC1: RIC1; InterPro 42.0 3.9E+02 0.0084 27.1 14.5 152 316-480 86-253 (258)
455 PHA03100 ankyrin repeat protei 41.9 4E+02 0.0086 29.1 13.3 169 256-439 80-272 (480)
456 KOG2297 Predicted translation 41.8 1.3E+02 0.0028 31.2 8.2 16 345-360 323-338 (412)
457 KOG0376 Serine-threonine phosp 41.5 42 0.0009 36.7 5.0 103 284-390 11-117 (476)
458 PF11846 DUF3366: Domain of un 41.3 71 0.0015 30.5 6.3 29 411-439 141-169 (193)
459 PF11768 DUF3312: Protein of u 41.1 3.2E+02 0.007 30.7 11.8 56 251-306 413-473 (545)
460 PF14669 Asp_Glu_race_2: Putat 41.1 3.5E+02 0.0075 26.3 14.6 201 306-541 2-218 (233)
461 PF11838 ERAP1_C: ERAP1-like C 40.7 2.9E+02 0.0064 28.3 11.4 143 293-439 146-304 (324)
462 cd08326 CARD_CASP9 Caspase act 40.4 1.9E+02 0.0042 23.8 7.8 63 296-362 18-80 (84)
463 KOG3677 RNA polymerase I-assoc 40.4 4.1E+02 0.0089 28.9 11.8 87 251-338 193-298 (525)
464 smart00544 MA3 Domain in DAP-5 40.0 2.4E+02 0.0051 24.1 9.6 101 279-389 4-106 (113)
465 PRK12356 glutaminase; Reviewed 39.8 1.2E+02 0.0025 31.8 7.8 153 409-596 93-257 (319)
466 KOG0508 Ankyrin repeat protein 39.6 5.6E+02 0.012 28.3 15.9 267 188-483 73-373 (615)
467 KOG2063 Vacuolar assembly/sort 39.5 6.8E+02 0.015 30.1 14.8 112 314-426 506-638 (877)
468 KOG0890 Protein kinase of the 39.4 7E+02 0.015 33.3 15.5 114 317-439 1388-1508(2382)
469 PF11848 DUF3368: Domain of un 39.3 78 0.0017 23.0 4.7 35 286-320 11-45 (48)
470 KOG4592 Uncharacterized conser 38.5 71 0.0015 35.9 6.2 24 312-335 416-439 (728)
471 KOG4077 Cytochrome c oxidase, 38.2 1E+02 0.0022 27.6 6.0 47 361-407 67-113 (149)
472 PHA02878 ankyrin repeat protei 38.1 4.8E+02 0.01 28.7 13.2 52 286-341 43-96 (477)
473 PF12862 Apc5: Anaphase-promot 38.1 2.2E+02 0.0049 23.6 8.2 21 319-339 48-68 (94)
474 KOG2062 26S proteasome regulat 37.8 5.7E+02 0.012 29.9 13.1 21 419-439 215-235 (929)
475 PF10366 Vps39_1: Vacuolar sor 37.8 2.2E+02 0.0048 24.6 8.2 26 315-340 42-67 (108)
476 cd08332 CARD_CASP2 Caspase act 37.6 2.2E+02 0.0048 23.7 7.9 59 296-358 22-80 (90)
477 KOG2659 LisH motif-containing 37.6 2.7E+02 0.0059 27.6 9.5 21 283-303 70-90 (228)
478 PF11817 Foie-gras_1: Foie gra 36.6 1.4E+02 0.003 29.9 7.9 57 313-369 179-244 (247)
479 PF14689 SPOB_a: Sensor_kinase 36.2 82 0.0018 24.2 4.7 46 359-406 6-51 (62)
480 PF12968 DUF3856: Domain of Un 36.0 3.2E+02 0.0069 24.4 9.1 61 417-477 58-130 (144)
481 KOG2168 Cullins [Cell cycle co 35.7 5.8E+02 0.013 30.3 13.2 24 248-271 327-350 (835)
482 PF12862 Apc5: Anaphase-promot 35.7 1.6E+02 0.0035 24.4 6.9 18 388-405 51-68 (94)
483 PF10475 DUF2450: Protein of u 35.7 3.5E+02 0.0075 27.8 10.8 114 346-474 101-221 (291)
484 COG5108 RPO41 Mitochondrial DN 35.3 95 0.0021 35.4 6.6 75 348-426 33-115 (1117)
485 PRK13341 recombination factor 35.1 8.2E+02 0.018 28.9 14.8 30 356-385 271-300 (725)
486 PF13762 MNE1: Mitochondrial s 35.0 2.7E+02 0.0059 25.6 8.6 77 249-325 42-128 (145)
487 KOG4521 Nuclear pore complex, 34.7 4.2E+02 0.009 32.6 11.9 122 314-442 985-1131(1480)
488 TIGR02710 CRISPR-associated pr 34.4 4.6E+02 0.0099 28.3 11.4 127 348-476 135-275 (380)
489 PRK10941 hypothetical protein; 34.4 1.7E+02 0.0038 29.8 8.1 75 418-502 185-260 (269)
490 PRK02287 hypothetical protein; 34.2 1.8E+02 0.0038 27.6 7.4 70 408-478 101-171 (171)
491 PF01347 Vitellogenin_N: Lipop 34.0 7.6E+02 0.016 28.2 17.7 224 245-474 344-618 (618)
492 KOG1546 Metacaspase involved i 33.9 51 0.0011 34.2 4.0 53 64-135 10-62 (362)
493 PF04762 IKI3: IKI3 family; I 33.8 7.9E+02 0.017 30.0 14.7 171 282-478 699-903 (928)
494 PF03276 Gag_spuma: Spumavirus 33.6 2.4E+02 0.0053 31.4 9.2 109 60-181 436-547 (582)
495 PHA02876 ankyrin repeat protei 33.4 8.2E+02 0.018 28.4 15.9 253 249-536 145-403 (682)
496 TIGR02710 CRISPR-associated pr 32.9 6.5E+02 0.014 27.1 12.6 125 282-406 135-274 (380)
497 KOG0403 Neoplastic transformat 32.9 2.6E+02 0.0056 30.6 9.1 178 281-473 218-406 (645)
498 COG2256 MGS1 ATPase related to 32.6 6.8E+02 0.015 27.2 13.4 145 329-475 192-352 (436)
499 COG2178 Predicted RNA-binding 32.1 2.4E+02 0.0053 27.3 8.0 96 276-371 28-149 (204)
500 COG5187 RPN7 26S proteasome re 31.8 4.6E+02 0.0099 27.2 10.2 152 360-527 55-219 (412)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.9e-65 Score=588.50 Aligned_cols=419 Identities=32% Similarity=0.559 Sum_probs=363.9
Q ss_pred CCCCCCcc--ccccc-----cCCChHHHHHHHHHhcCCCCCCCccCCccc------------------------------
Q 044791 192 FQQPRSPN--QWNNQ-----QNQGYPQARNSYQQVSPGHQIPNQLNNVPN------------------------------ 234 (623)
Q Consensus 192 ~~~~~~p~--~w~~~-----~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~------------------------------ 234 (623)
|+....|+ .|+.+ +.|++++|+++|++|...+..|+...+...
T Consensus 181 f~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~ 260 (697)
T PLN03081 181 FDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTF 260 (697)
T ss_pred HhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccce
Confidence 55544455 88877 899999999999999777776654322110
Q ss_pred -----cccCCCCC-------------CCCchHHHHHHHHHHHcCCHHHHHHHHH----cCCCCCHHHHHHHHHHHhCCCC
Q 044791 235 -----NMNQCPAG-------------DQVLPPSVADLARLCQEGKVKEAIELMD----KGVKADASCFYTLFELCGNPKW 292 (623)
Q Consensus 235 -----~~~~~~~~-------------~~~~~~~~~li~~~~~~g~~~~A~~l~~----~~~~pd~~ty~~Ll~~~~~~g~ 292 (623)
+..+|+.+ ..+..+|++||.+|++.|++++|+++|+ .|+.||..||+++|.+|++.|+
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~ 340 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence 11111111 1256688889999999999999998884 4899999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 293 YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 293 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
+++|.+++.+|++.|+.+|..+|++||++|+++|++++|.++|++|.++|+++||+||.+|++.|+.++|+++|++|++.
T Consensus 341 ~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~ 420 (697)
T PLN03081 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420 (697)
T ss_pred hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHH
Q 044791 373 GLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEA 452 (623)
Q Consensus 373 g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~ 452 (623)
|+.||.+||+++|.+|++.|++++|.++|+.|.+++|+.|+..+|++||++|++.|++++|.++|++ |++.|+..+|++
T Consensus 421 g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~-~~~~p~~~~~~~ 499 (697)
T PLN03081 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR-APFKPTVNMWAA 499 (697)
T ss_pred CCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHH-CCCCCCHHHHHH
Confidence 9999999999999999999999999999999998889999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccC---------------------
Q 044791 453 LRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRN--------------------- 511 (623)
Q Consensus 453 Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~--------------------- 511 (623)
|+.+|+.+|+++.|+.+++.+.++.+.+. .+|..|+..|++.|++..
T Consensus 500 Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~------------~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~ 567 (697)
T PLN03081 500 LLTACRIHKNLELGRLAAEKLYGMGPEKL------------NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567 (697)
T ss_pred HHHHHHHcCCcHHHHHHHHHHhCCCCCCC------------cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeE
Confidence 99999999999999999999988876644 488999999999988730
Q ss_pred ------------Cc-----ccch-HHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCCCCCh
Q 044791 512 ------------PT-----LYRD-DEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTP 573 (623)
Q Consensus 512 ------------~~-----~~~~-~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~~~~ 573 (623)
++ .-+| +...+++.+|++.|+.||.......++...|+..+..|+++++.|++++...++.+
T Consensus 568 i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~ 647 (697)
T PLN03081 568 IEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTP 647 (697)
T ss_pred EEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCCCCe
Confidence 00 0001 12223335566666677777666777777788888999999999999999999999
Q ss_pred hHHHhhHhhhcchhHHHHHHHHHhCCceeeecCCcccccccccccCCCCC
Q 044791 574 LRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGDYW 623 (623)
Q Consensus 574 ~~i~~~l~~~g~~~~a~~l~~~~~~~~~~~rd~~~~~~~~~~~~~~~~~~ 623 (623)
++|+|||++|||||+|.|+++++.+|+|++||++|||||++|+|||||||
T Consensus 648 i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 648 LQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred EEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.8e-58 Score=542.08 Aligned_cols=409 Identities=29% Similarity=0.522 Sum_probs=336.5
Q ss_pred ccccccc-----cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCC-----------------CCCCchHHHHHHHH
Q 044791 198 PNQWNNQ-----QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPA-----------------GDQVLPPSVADLAR 255 (623)
Q Consensus 198 p~~w~~~-----~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~-----------------~~~~~~~~~~li~~ 255 (623)
...|+.+ +.|++++|+++|++|...+..|+...+...+...|.. ..++..++++||.+
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 3388877 9999999999999998888888876654333322222 12345566667777
Q ss_pred HHHcCCHHHHHHHHHcC----------------------------------CCCCHHHHHHHHHHHhCCCCHHHHHHHHH
Q 044791 256 LCQEGKVKEAIELMDKG----------------------------------VKADASCFYTLFELCGNPKWYENAKKVHD 301 (623)
Q Consensus 256 ~~~~g~~~~A~~l~~~~----------------------------------~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~ 301 (623)
|++.|++++|+++|++. +.||..||+++|.+|++.|+++.+.+++.
T Consensus 434 y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~ 513 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHA 513 (857)
T ss_pred HHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHH
Confidence 77777777777666543 45555555555555555555555555555
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 044791 302 YFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTF 381 (623)
Q Consensus 302 ~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty 381 (623)
.|++.|+.+|..++|+||++|+++|++++|.++|++| .+|+++||+||.+|++.|+.++|+++|++|++.|+.||.+||
T Consensus 514 ~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~ 592 (857)
T PLN03077 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF 592 (857)
T ss_pred HHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccH
Confidence 5666666666677778889999999999999999999 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 044791 382 LAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHG 461 (623)
Q Consensus 382 ~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g 461 (623)
+++|.+|++.|++++|+++|+.|.+++|+.|+..+|++|+++|++.|++++|++++++ |+++||..+|++|+.+|..+|
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~-m~~~pd~~~~~aLl~ac~~~~ 671 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINK-MPITPDPAVWGALLNACRIHR 671 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999999997779999999999999999999999999999999 999999999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCcccccc-------------------------------
Q 044791 462 DIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFR------------------------------- 510 (623)
Q Consensus 462 ~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~------------------------------- 510 (623)
+.+.++.+.+.+.++++++.. .|..+...|+..|++.
T Consensus 672 ~~e~~e~~a~~l~~l~p~~~~------------~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~ 739 (857)
T PLN03077 672 HVELGELAAQHIFELDPNSVG------------YYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHA 739 (857)
T ss_pred ChHHHHHHHHHHHhhCCCCcc------------hHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEE
Confidence 999999999999999887654 4555555566555543
Q ss_pred --CCc-----ccchHHHHH-HHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCCCCChhHHHhhHhh
Q 044791 511 --NPT-----LYRDDEKLK-ALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRV 582 (623)
Q Consensus 511 --~~~-----~~~~~eal~-~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~~~~~~i~~~l~~ 582 (623)
+++ ..+|.+.++ +..+|++.|+.||..... .++...|+..+..|++||+.|++++...++.+++|+|||++
T Consensus 740 f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~ 818 (857)
T PLN03077 740 FLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYM 818 (857)
T ss_pred EecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEe
Confidence 111 112223333 336777777777776544 34567788889999999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHhCCceeeecCCcccccccccccCCC
Q 044791 583 CGDCHNAIKIMSRIVGRELIVRDNKRFHHFKDGKCSCGD 621 (623)
Q Consensus 583 ~g~~~~a~~l~~~~~~~~~~~rd~~~~~~~~~~~~~~~~ 621 (623)
|||||+|.|+++++.+|+|++||++|||||++|+|||||
T Consensus 819 c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 819 CENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred CccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999998
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=5.6e-49 Score=454.10 Aligned_cols=369 Identities=19% Similarity=0.216 Sum_probs=316.1
Q ss_pred ccccc-----cCCChHHHHHHHHHhcCCC-CCCCccCCccccccCC-----------------CCCCCCchHHHHHHHHH
Q 044791 200 QWNNQ-----QNQGYPQARNSYQQVSPGH-QIPNQLNNVPNNMNQC-----------------PAGDQVLPPSVADLARL 256 (623)
Q Consensus 200 ~w~~~-----~~g~~~~A~~lf~~m~~~~-~~p~~~~~~~~~~~~~-----------------~~~~~~~~~~~~li~~~ 256 (623)
.|+.. +.|++++|+++|+.|...+ ..|+...+...+...+ .+..++..+++.||.+|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 67765 8899999999999996533 3444333211111111 12345678889999999
Q ss_pred HHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC--------------------------
Q 044791 257 CQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRG-------------------------- 310 (623)
Q Consensus 257 ~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p-------------------------- 310 (623)
++.|++++|+++|++...||.++||+||.+|++.|++++|+++|++|++.|+.|
T Consensus 169 ~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~ 248 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHC 248 (697)
T ss_pred hcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHH
Confidence 999999999999999888999999999999999999999999999997766555
Q ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 044791 311 ---------DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTF 381 (623)
Q Consensus 311 ---------d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty 381 (623)
|..+||+||++|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 249 ~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~ 328 (697)
T PLN03081 249 CVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTF 328 (697)
T ss_pred HHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 45566888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 044791 382 LAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHG 461 (623)
Q Consensus 382 ~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g 461 (623)
+++|.+|++.|++++|.++++.|.+. |+.+|..+|++||++|+++|++++|.++|++ |. +||+++||+||.+|+++|
T Consensus 329 ~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~-m~-~~d~~t~n~lI~~y~~~G 405 (697)
T PLN03081 329 SIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDR-MP-RKNLISWNALIAGYGNHG 405 (697)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHh-CC-CCCeeeHHHHHHHHHHcC
Confidence 99999999999999999999999977 9999999999999999999999999999999 86 689999999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHH-CCcccCcceee
Q 044791 462 DIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKE-STYVPDTRYVL 540 (623)
Q Consensus 462 ~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~-~Gi~Pd~~t~~ 540 (623)
+.++|.++++.|.+. ++. ||..||+++|.+|++.|.+ ++|+++|++|.+ .|+.|+..+|.
T Consensus 406 ~~~~A~~lf~~M~~~---g~~--------Pd~~T~~~ll~a~~~~g~~--------~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 406 RGTKAVEMFERMIAE---GVA--------PNHVTFLAVLSACRYSGLS--------EQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred CHHHHHHHHHHHHHh---CCC--------CCHHHHHHHHHHHhcCCcH--------HHHHHHHHHHHHhcCCCCCccchH
Confidence 999888888887764 444 9999999999999999988 799999999975 69999999999
Q ss_pred eccCHHHHHHHHHHHHhHHHHHHhcccCCCCChhH-----HHhhHhhhcchhHHHHHHHHHh
Q 044791 541 HDIDQEAKEQALLYHSERLAIAYGLISTPARTPLR-----IIKNLRVCGDCHNAIKIMSRIV 597 (623)
Q Consensus 541 ~li~~~~k~~~~~~~~g~l~~A~~ll~~m~~~~~~-----i~~~l~~~g~~~~a~~l~~~~~ 597 (623)
.+|+ ++++.|++++|++++++|+..+.. ++.+++..|+.+.|.+++.++.
T Consensus 467 ~li~-------~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 467 CMIE-------LLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred hHHH-------HHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 9996 999999999999999998755432 3344455555555555555543
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.5e-47 Score=446.97 Aligned_cols=368 Identities=14% Similarity=0.196 Sum_probs=322.3
Q ss_pred cCCChHHHHHHHHHhcCCCCCC-CccC---------------CccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIP-NQLN---------------NVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIEL 268 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p-~~~~---------------~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 268 (623)
+.|++++|+++|++|.+.+.++ +... ....++..+. .++..+|+.||.+|++.|++++|+++
T Consensus 382 r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~--~pd~~Tyn~LL~a~~k~g~~e~A~~l 459 (1060)
T PLN03218 382 RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR--NPTLSTFNMLMSVCASSQDIDGALRV 459 (1060)
T ss_pred HCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC--CCCHHHHHHHHHHHHhCcCHHHHHHH
Confidence 7899999999999997765543 1111 1111111122 26788999999999999999999999
Q ss_pred HH----cCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----
Q 044791 269 MD----KGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---- 340 (623)
Q Consensus 269 ~~----~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---- 340 (623)
|+ .|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|+++|++|.+
T Consensus 460 f~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 85 4899999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchh
Q 044791 341 RSMDSWHLMINGYADNGLGDEGLQLFEQMRK--LGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYL 418 (623)
Q Consensus 341 ~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~--~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~ 418 (623)
+|.++||+||.+|++.|++++|+++|++|++ .|+.||.+||++||.+|++.|++++|+++|++|.+. |+.|+..+|+
T Consensus 540 PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~-gi~p~~~tyn 618 (1060)
T PLN03218 540 PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY-NIKGTPEVYT 618 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCChHHHH
Confidence 6888999999999999999999999999986 679999999999999999999999999999999976 9999999999
Q ss_pred hHHHHHHhcCCHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhh
Q 044791 419 GLVGVLGKCGHLFEAQQFIEQKL---PFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRT 495 (623)
Q Consensus 419 ~Li~~~~k~g~~e~A~~lf~~~m---~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t 495 (623)
+||.+|++.|++++|+++|++ | ++.||..+|++||.+|++.|++++|.++++.|.+. +.. |+..+
T Consensus 619 sLI~ay~k~G~~deAl~lf~e-M~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~---G~~--------pd~~t 686 (1060)
T PLN03218 619 IAVNSCSQKGDWDFALSIYDD-MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ---GIK--------LGTVS 686 (1060)
T ss_pred HHHHHHHhcCCHHHHHHHHHH-HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCC--------CCHHH
Confidence 999999999999999999999 5 37899999999999999999999888888777763 333 89999
Q ss_pred HHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCCCCC---
Q 044791 496 AISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPART--- 572 (623)
Q Consensus 496 ~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~~~--- 572 (623)
|+++|.+|++.|++ ++|+++|++|++.|+.||..+|+.+|. .+++.|++++|++++.+|...
T Consensus 687 ynsLI~ay~k~G~~--------eeA~~lf~eM~~~g~~PdvvtyN~LI~-------gy~k~G~~eeAlelf~eM~~~Gi~ 751 (1060)
T PLN03218 687 YSSLMGACSNAKNW--------KKALELYEDIKSIKLRPTVSTMNALIT-------ALCEGNQLPKALEVLSEMKRLGLC 751 (1060)
T ss_pred HHHHHHHHHhCCCH--------HHHHHHHHHHHHcCCCCCHHHHHHHHH-------HHHHCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999987 799999999999999999999999996 889999999999999988532
Q ss_pred hh-----HHHhhHhhhcchhHHHHHHHHHhCCcee
Q 044791 573 PL-----RIIKNLRVCGDCHNAIKIMSRIVGRELI 602 (623)
Q Consensus 573 ~~-----~i~~~l~~~g~~~~a~~l~~~~~~~~~~ 602 (623)
|. .++.++.+.|+.++|.+++..|.+.++.
T Consensus 752 Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence 22 3667889999999999999999988763
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.6e-46 Score=440.21 Aligned_cols=299 Identities=17% Similarity=0.240 Sum_probs=208.7
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHH----cCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044791 245 VLPPSVADLARLCQEGKVKEAIELMD----KGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIE 320 (623)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~A~~l~~----~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~ 320 (623)
+..+|++||.+|++.|++++|+++|+ .|+.||..+|++||.+|++.|++++|+++|++|++.|+.||..+|++||.
T Consensus 471 D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~ 550 (1060)
T PLN03218 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550 (1060)
T ss_pred CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 45666677777777777777777764 36677777777777777777777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHhh------cCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044791 321 MYGKCGSMTDARRVFDHMA------DRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAI 394 (623)
Q Consensus 321 ~y~k~g~~~~A~~lf~~m~------~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~ 394 (623)
+|++.|++++|+++|++|. .+|.++|++||.+|++.|++++|+++|++|.+.|+.|+..+|++||.+|++.|++
T Consensus 551 a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~ 630 (1060)
T PLN03218 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDW 630 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCH
Confidence 7777777777777777774 2466677777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 044791 395 EEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKL--PFEPTAEFWEALRNYARIHGDIDLEDHAEEL 472 (623)
Q Consensus 395 e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m--~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~ 472 (623)
++|+++|++|.+. |+.||..+|++||++|++.|++++|.++|+++. ++.||..+|++||.+|++.|++++|.++++.
T Consensus 631 deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 631 DFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 7777777777755 777777777777777777777777777777622 3566777777777777777777766666666
Q ss_pred HHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHH
Q 044791 473 MVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQAL 552 (623)
Q Consensus 473 ~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~ 552 (623)
|.+. +.. ||..+|++||.+|++.|++ ++|+++|++|++.|+.||..||..+|. .
T Consensus 710 M~~~---g~~--------PdvvtyN~LI~gy~k~G~~--------eeAlelf~eM~~~Gi~Pd~~Ty~sLL~-------a 763 (1060)
T PLN03218 710 IKSI---KLR--------PTVSTMNALITALCEGNQL--------PKALEVLSEMKRLGLCPNTITYSILLV-------A 763 (1060)
T ss_pred HHHc---CCC--------CCHHHHHHHHHHHHHCCCH--------HHHHHHHHHHHHcCCCCCHHHHHHHHH-------H
Confidence 5543 222 6677777777777777766 577777777777777777777777664 5
Q ss_pred HHHHhHHHHHHhcccCCC
Q 044791 553 LYHSERLAIAYGLISTPA 570 (623)
Q Consensus 553 ~~~~g~l~~A~~ll~~m~ 570 (623)
+++.|++++|..++..|.
T Consensus 764 ~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAK 781 (1060)
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 666666666666666654
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.6e-46 Score=437.11 Aligned_cols=393 Identities=19% Similarity=0.241 Sum_probs=321.0
Q ss_pred CCCCCCcc--ccccc-----cCCChHHHHHHHHHhcCCCCCCCccCCcccccc---------------------------
Q 044791 192 FQQPRSPN--QWNNQ-----QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMN--------------------------- 237 (623)
Q Consensus 192 ~~~~~~p~--~w~~~-----~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~--------------------------- 237 (623)
|+....++ .|+.+ +.|++++|+++|++|...+..|+...+...+..
T Consensus 144 f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 223 (857)
T PLN03077 144 FGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD 223 (857)
T ss_pred HhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccc
Confidence 55544444 88877 899999999999999887888875544211111
Q ss_pred --------CCCCC-------------CCCchHHHHHHHHHHHcCCHHHHHHHHH----cCCCCCHHHHHHHHHHHhCCCC
Q 044791 238 --------QCPAG-------------DQVLPPSVADLARLCQEGKVKEAIELMD----KGVKADASCFYTLFELCGNPKW 292 (623)
Q Consensus 238 --------~~~~~-------------~~~~~~~~~li~~~~~~g~~~~A~~l~~----~~~~pd~~ty~~Ll~~~~~~g~ 292 (623)
+|+.+ ..+..+|++||.+|++.|++++|+++|+ .|+.||..||+.+|.+|++.|+
T Consensus 224 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~ 303 (857)
T PLN03077 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD 303 (857)
T ss_pred hHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCC
Confidence 11111 1244566677777777777777777664 3777888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 293 YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 293 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
++.|.+++..|++.|+.||..+||+||.+|+++|++++|.++|++|.++|+++||+||.+|++.|++++|+++|++|.+.
T Consensus 304 ~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~ 383 (857)
T PLN03077 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD 383 (857)
T ss_pred hHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHH
Q 044791 373 GLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEA 452 (623)
Q Consensus 373 g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~ 452 (623)
|+.||..||+++|.+|++.|++++|.++++.|.+. |+.++..+|++||++|+++|++++|.++|++ |. ++|.++|++
T Consensus 384 g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~-m~-~~d~vs~~~ 460 (857)
T PLN03077 384 NVSPDEITIASVLSACACLGDLDVGVKLHELAERK-GLISYVVVANALIEMYSKCKCIDKALEVFHN-IP-EKDVISWTS 460 (857)
T ss_pred CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHh-CC-CCCeeeHHH
Confidence 99999999999999999999999999999999977 9999999999999999999999999999999 87 689999999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCc
Q 044791 453 LRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTY 532 (623)
Q Consensus 453 Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi 532 (623)
||.+|+..|+.++|.++++.|.+ +.. ||..||.++|.+|++.|.+ +++.+++..|.+.|+
T Consensus 461 mi~~~~~~g~~~eA~~lf~~m~~----~~~--------pd~~t~~~lL~a~~~~g~l--------~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 461 IIAGLRLNNRCFEALIFFRQMLL----TLK--------PNSVTLIAALSACARIGAL--------MCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHh----CCC--------CCHhHHHHHHHHHhhhchH--------HHhHHHHHHHHHhCC
Confidence 99999999999988888888764 233 9999999999999999987 699999999999999
Q ss_pred ccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCCCCC---hhHHHhhHhhhcchhHHHHHHHHHhCCceeeecCCcc
Q 044791 533 VPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPART---PLRIIKNLRVCGDCHNAIKIMSRIVGRELIVRDNKRF 609 (623)
Q Consensus 533 ~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~~~---~~~i~~~l~~~g~~~~a~~l~~~~~~~~~~~rd~~~~ 609 (623)
.+|..+++.+|+ .+++.|++++|+.+++.+... ...++..|...|+.++|+++|.+|.+.++ ..|...|
T Consensus 521 ~~~~~~~naLi~-------~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~-~Pd~~T~ 592 (857)
T PLN03077 521 GFDGFLPNALLD-------LYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV-NPDEVTF 592 (857)
T ss_pred CccceechHHHH-------HHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCcccH
Confidence 999999999986 677777777777777666211 12355566666777777777777766553 2344445
Q ss_pred cccccc
Q 044791 610 HHFKDG 615 (623)
Q Consensus 610 ~~~~~~ 615 (623)
..+..+
T Consensus 593 ~~ll~a 598 (857)
T PLN03077 593 ISLLCA 598 (857)
T ss_pred HHHHHH
Confidence 444444
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1e-18 Score=188.15 Aligned_cols=291 Identities=13% Similarity=0.068 Sum_probs=237.8
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCC-CC------H
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVK-AD------A 277 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~-pd------~ 277 (623)
..|++++|+..|+++... .|+ ....+..+...+.+.|++++|+.+++..+. ++ .
T Consensus 47 ~~~~~~~A~~~~~~al~~--~p~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 107 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKV--DPE-----------------TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRL 107 (389)
T ss_pred hcCChHHHHHHHHHHHhc--Ccc-----------------cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHH
Confidence 689999999999999441 221 223556788889999999999999975322 11 2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCh--------HHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSM--------DSWHLM 349 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~--------~tyn~L 349 (623)
.++..++..|.+.|++++|+++|+++.+.. ..+..++..++.+|.+.|++++|+++|+.+.+.+. ..|..+
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 568889999999999999999999998863 34678999999999999999999999999976421 146678
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCC
Q 044791 350 INGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGH 429 (623)
Q Consensus 350 i~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~ 429 (623)
+..+.+.|++++|+.+|+++.+.. .-+..++..+...+.+.|++++|.++|+++... +-.....+++.|+.+|++.|+
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCC
Confidence 888999999999999999999763 224567888889999999999999999999854 222224568889999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCc---c
Q 044791 430 LFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSR---L 506 (623)
Q Consensus 430 ~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~---~ 506 (623)
+++|..+++++....|+...+..++..+.+.|++++|..+++.+.+.. |+..++..++..+.. .
T Consensus 265 ~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~-------------P~~~~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRH-------------PSLRGFHRLLDYHLAEAEE 331 (389)
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------------cCHHHHHHHHHHhhhccCC
Confidence 999999999966677888788889999999999999999998877753 667788888887664 3
Q ss_pred ccccCCcccchHHHHHHHHHHHHCCcccCcce
Q 044791 507 VEFRNPTLYRDDEKLKALNQMKESTYVPDTRY 538 (623)
Q Consensus 507 ~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t 538 (623)
|+. ++++.+|++|.+.+++|+...
T Consensus 332 g~~--------~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 332 GRA--------KESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred ccc--------hhHHHHHHHHHHHHHhCCCCE
Confidence 344 599999999999999988874
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.81 E-value=2.8e-17 Score=193.71 Aligned_cols=249 Identities=13% Similarity=0.032 Sum_probs=119.4
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC--C-CCCHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG--V-KADASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~-~pd~~ty~ 281 (623)
..|++++|++.|+++... .|+ ....+..+...+.+.|++++|+.+|++. . ..+...+.
T Consensus 511 ~~g~~~~A~~~~~~~~~~--~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 571 (899)
T TIGR02917 511 QEGNPDDAIQRFEKVLTI--DPK-----------------NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPAL 571 (899)
T ss_pred HCCCHHHHHHHHHHHHHh--CcC-----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHH
Confidence 678888888888877331 111 1123334444555555555555555431 1 11233444
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCC
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGL 358 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~ 358 (623)
.++..+.+.|++++|.++++++.+.. ..+..+|..++.+|.+.|++++|+..|+++.+. +...|..+..+|.+.|+
T Consensus 572 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 650 (899)
T TIGR02917 572 ALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKN 650 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence 45555555555555555555554432 224445555555555555555555555544321 23344455555555555
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHH
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIE 438 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~ 438 (623)
+++|+.+|+++.+.. ..+..++..++..+...|++++|..+++.+... ...+...+..+...+.+.|++++|+++|+
T Consensus 651 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 651 YAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555555554431 112344444455555555555555555554432 11233344444444445555555555555
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 439 QKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 439 ~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
+++...|+..++..+..++...|+.++|.+.++.+.+.
T Consensus 728 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 765 (899)
T TIGR02917 728 KALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT 765 (899)
T ss_pred HHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 43333444444444444444555555444444444443
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.80 E-value=1.5e-17 Score=179.10 Aligned_cols=267 Identities=13% Similarity=0.097 Sum_probs=215.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHc--CCCCC-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHH
Q 044791 251 ADLARLCQEGKVKEAIELMDK--GVKAD-ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD---LVLNNKVIEMYGK 324 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~--~~~pd-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~y~~Li~~y~k 324 (623)
.+...+...|++++|++.|++ ...|+ ..++..+...+...|++++|..+++.+++.+..++ ..++..|+..|.+
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~ 119 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK 119 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 334556788999999999976 33454 45788999999999999999999999988643322 3578889999999
Q ss_pred cCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHH
Q 044791 325 CGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE----QTFLAVFSACGSADAIEEA 397 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~----~ty~~li~a~~~~g~~e~A 397 (623)
.|++++|+.+|+++.+ .+..+++.++..+.+.|++++|+++|++|.+.+..+.. ..|..+...+.+.|++++|
T Consensus 120 ~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999986 45668999999999999999999999999986544322 2456677788899999999
Q ss_pred HHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHH
Q 044791 398 FIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA--EFWEALRNYARIHGDIDLEDHAEELMV 474 (623)
Q Consensus 398 ~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~--~ty~~Li~a~~~~g~~~~A~~~~~~~~ 474 (623)
..+|+++.+. .| +...+..+...|.+.|++++|.++|++++...|+. .+++.|+.+|...|+.++|...++.+.
T Consensus 200 ~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 276 (389)
T PRK11788 200 RALLKKALAA---DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRAL 276 (389)
T ss_pred HHHHHHHHhH---CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999853 34 35577788899999999999999999966555653 568889999999999999999999988
Q ss_pred hcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeecc
Q 044791 475 DLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDI 543 (623)
Q Consensus 475 ~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li 543 (623)
++.+ +...+..+...+.+.|++ ++|+++|+++.+. .|+..++..++
T Consensus 277 ~~~p-------------~~~~~~~la~~~~~~g~~--------~~A~~~l~~~l~~--~P~~~~~~~l~ 322 (389)
T PRK11788 277 EEYP-------------GADLLLALAQLLEEQEGP--------EAAQALLREQLRR--HPSLRGFHRLL 322 (389)
T ss_pred HhCC-------------CchHHHHHHHHHHHhCCH--------HHHHHHHHHHHHh--CcCHHHHHHHH
Confidence 8643 344567888889999987 6999999877665 58877666555
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.80 E-value=4.6e-17 Score=191.93 Aligned_cols=355 Identities=15% Similarity=0.153 Sum_probs=256.2
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC---CCCCHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG---VKADASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~---~~pd~~ty~ 281 (623)
..|++++|++.|+++.. ..|+ ....+..+...+...|++++|.++|++. ...+..++.
T Consensus 477 ~~~~~~~A~~~~~~a~~--~~~~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 537 (899)
T TIGR02917 477 GKGDLAKAREAFEKALS--IEPD-----------------FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAIL 537 (899)
T ss_pred hCCCHHHHHHHHHHHHh--hCCC-----------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 88999999999998843 1121 2234557788899999999999999752 233567899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCC
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGL 358 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~ 358 (623)
.+...+.+.|+.++|..+++++.+.+ ..+...+..++..|.+.|++++|+.+++++.+ .+...|..++.+|...|+
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999998864 34678888999999999999999999999875 356689999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHH
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFI 437 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf 437 (623)
+++|+..|+++.+.. ..+...+..+..++...|++++|..+|+++.+ ..| +..++..++..+...|++++|.+++
T Consensus 617 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 617 LNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE---LKPDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999998764 23567888999999999999999999999984 334 5778999999999999999999999
Q ss_pred HhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCC---------------------CCCCCCCchhh
Q 044791 438 EQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPK---------------------KIPTPPPKKRT 495 (623)
Q Consensus 438 ~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~---------------------~~~~~~p~~~t 495 (623)
+.+....| +...+..+...+...|++++|.+.++.+.+..+...... .+.....+...
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 772 (899)
T TIGR02917 693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL 772 (899)
T ss_pred HHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99333334 667888889999999999999999999888765541100 00111223344
Q ss_pred HHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCc-ceeeeccCHHHHHHHHHHHHhHHHHHHhcccCC----C
Q 044791 496 AISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDT-RYVLHDIDQEAKEQALLYHSERLAIAYGLISTP----A 570 (623)
Q Consensus 496 ~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~-~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m----~ 570 (623)
+..+...+...|++ ++|+++|+++.+.. |+. ..+..+ +.++...|+ .+|+.++++. +
T Consensus 773 ~~~la~~~~~~g~~--------~~A~~~~~~~~~~~--p~~~~~~~~l-------~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 773 RTALAELYLAQKDY--------DKAIKHYRTVVKKA--PDNAVVLNNL-------AWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred HHHHHHHHHHCcCH--------HHHHHHHHHHHHhC--CCCHHHHHHH-------HHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 44455555555655 57777777776543 332 222221 123344444 4455444332 1
Q ss_pred CChh---HHHhhHhhhcchhHHHHHHHHHhCCce
Q 044791 571 RTPL---RIIKNLRVCGDCHNAIKIMSRIVGREL 601 (623)
Q Consensus 571 ~~~~---~i~~~l~~~g~~~~a~~l~~~~~~~~~ 601 (623)
..+. .+-..+..-|+.++|.+++.++.+.+.
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 1111 112223455667777777777665543
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.70 E-value=3.1e-15 Score=158.48 Aligned_cols=257 Identities=15% Similarity=0.165 Sum_probs=218.5
Q ss_pred ccccc-----cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--C
Q 044791 200 QWNNQ-----QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--G 272 (623)
Q Consensus 200 ~w~~~-----~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~ 272 (623)
.|+++ .+|++-.|+.-|++..+ ..|+ ....|.+|...|...+.+++|+..|.+ .
T Consensus 220 awsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~-----------------f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 220 AWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPN-----------------FLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred eehhcchHHhhcchHHHHHHHHHHhhc--CCCc-----------------chHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 67776 66777777777776533 2222 335666889999999999999999976 5
Q ss_pred CCCCH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC---hHHHH
Q 044791 273 VKADA-SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD-LVLNNKVIEMYGKCGSMTDARRVFDHMADRS---MDSWH 347 (623)
Q Consensus 273 ~~pd~-~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~---~~tyn 347 (623)
..|+. +.|..|...|...|.+|.|++.|++.++. .|+ ...|+.|.+++-..|++++|+..|.+..... ..+.+
T Consensus 281 lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~ 358 (966)
T KOG4626|consen 281 LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMN 358 (966)
T ss_pred cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHH
Confidence 56654 67889999999999999999999999884 555 6889999999999999999999999887532 34889
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-ccchhhHHHHHH
Q 044791 348 LMINGYADNGLGDEGLQLFEQMRKLGLQPN-EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TEHYLGLVGVLG 425 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd-~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~~~ 425 (623)
.|...|...|++++|..+|....+ +.|. ...++.|...|-..|++++|+..|++.+ .++|+ ...|+.|...|-
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHH
Confidence 999999999999999999999887 4554 4688999999999999999999999988 78886 568999999999
Q ss_pred hcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCC
Q 044791 426 KCGHLFEAQQFIEQKLPFEPTA-EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKAD 482 (623)
Q Consensus 426 k~g~~e~A~~lf~~~m~~~Pd~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~ 482 (623)
..|++++|+..+.+++.+.|.. ..++.|...|...|++.+|+..++....++|+...
T Consensus 434 e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 9999999999999988888865 68899999999999999999999999999988654
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.66 E-value=3.3e-14 Score=162.91 Aligned_cols=312 Identities=9% Similarity=-0.018 Sum_probs=207.6
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCC-HHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKAD-ASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd-~~ty~ 281 (623)
++|++++|..+++.+.. ..|+.... ...++.++...|++++|++.|++ ...|+ ...+.
T Consensus 54 ~~g~~~~A~~l~~~~l~--~~p~~~~~-----------------l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~ 114 (656)
T PRK15174 54 RKDETDVGLTLLSDRVL--TAKNGRDL-----------------LRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVL 114 (656)
T ss_pred hcCCcchhHHHhHHHHH--hCCCchhH-----------------HHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 88999999999997743 33333222 22555666678888888888875 34453 45677
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--C-ChHHHHHHHHHHHHcCC
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD--R-SMDSWHLMINGYADNGL 358 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~--~-~~~tyn~Li~~~~~~g~ 358 (623)
.+..++...|++++|++.++++++.. +.+...+..++.++...|++++|+.+++.+.. + +...+..+ ..+...|+
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~ 192 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSR 192 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCC
Confidence 77778888888888888888887742 23467777888888888888888888877643 2 22233333 34777888
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHH----H
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFE----A 433 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~----A 433 (623)
+++|+.+++.+++....++...+..+..++...|++++|+..|+.+.+. .| +...+..|..+|...|++++ |
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~---~p~~~~~~~~Lg~~l~~~G~~~eA~~~A 269 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR---GLDGAALRRSLGLAYYQSGRSREAKLQA 269 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhhHHHH
Confidence 8888888888776543334455555667777888888888888887743 33 45566677777888888775 7
Q ss_pred HHHHHhhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCC
Q 044791 434 QQFIEQKLPFEPT-AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNP 512 (623)
Q Consensus 434 ~~lf~~~m~~~Pd-~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~ 512 (623)
+..|++++...|+ ...+..+...+...|++++|...++...++.+... .....+-..+...|++
T Consensus 270 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~------------~a~~~La~~l~~~G~~--- 334 (656)
T PRK15174 270 AEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP------------YVRAMYARALRQVGQY--- 334 (656)
T ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHCCCH---
Confidence 7888886666664 45777777788888888888888888777665432 2344455666667766
Q ss_pred cccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccC
Q 044791 513 TLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLIST 568 (623)
Q Consensus 513 ~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~ 568 (623)
++|++.|+.+.+. .|+...+.. ..+.++...|+.++|...+..
T Consensus 335 -----~eA~~~l~~al~~--~P~~~~~~~------~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 335 -----TAASDEFVQLARE--KGVTSKWNR------YAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred -----HHHHHHHHHHHHh--CccchHHHH------HHHHHHHHCCCHHHHHHHHHH
Confidence 5788777666543 244322111 112244555666666555443
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.64 E-value=1.7e-13 Score=156.68 Aligned_cols=347 Identities=14% Similarity=0.078 Sum_probs=248.2
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC--CCCC-HHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG--VKAD-ASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~~pd-~~ty~ 281 (623)
..|+|++|++.|++... ..|+ ...+..+..+|.+.|++++|++.+++. +.|+ ..+|.
T Consensus 139 ~~~~~~~Ai~~y~~al~--~~p~------------------~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~ 198 (615)
T TIGR00990 139 RNKDFNKAIKLYSKAIE--CKPD------------------PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALN 198 (615)
T ss_pred HcCCHHHHHHHHHHHHh--cCCc------------------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 78999999999998744 2222 124557888999999999999999863 4453 45788
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcC-C---------------------------CC----CHHHHHHH-----------
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQST-I---------------------------RG----DLVLNNKV----------- 318 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g-~---------------------------~p----d~~~y~~L----------- 318 (623)
.+..++...|++++|+..|..+...+ + .| .......+
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA 278 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence 89999999999999987665443211 0 00 00000000
Q ss_pred ----------------HHHH------HHcCCHHHHHHHHHHhhcC------ChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044791 319 ----------------IEMY------GKCGSMTDARRVFDHMADR------SMDSWHLMINGYADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 319 ----------------i~~y------~k~g~~~~A~~lf~~m~~~------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~ 370 (623)
+..+ ...+++++|+++|++..+. ....|+.+...+...|++++|+..|++.+
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0000 1235789999999988753 23478889999999999999999999998
Q ss_pred HcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-H
Q 044791 371 KLGLQPN-EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-A 447 (623)
Q Consensus 371 ~~g~~Pd-~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-~ 447 (623)
+. .|+ ..+|..+...+...|++++|+..|+.+.+. .| +..+|..+...|...|++++|+..|++++.+.|+ .
T Consensus 359 ~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~ 433 (615)
T TIGR00990 359 EL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKL---NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI 433 (615)
T ss_pred Hc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence 75 455 568888889999999999999999998843 44 4678888999999999999999999998887775 5
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHH
Q 044791 448 EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQM 527 (623)
Q Consensus 448 ~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M 527 (623)
..|..+..++.+.|++++|...++...+..+.. ...+..+-..+...|++ ++|++.|++-
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~------------~~~~~~lg~~~~~~g~~--------~~A~~~~~~A 493 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA------------PDVYNYYGELLLDQNKF--------DEAIEKFDTA 493 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHccCH--------HHHHHHHHHH
Confidence 677788889999999999999999988876553 33566666777788887 6999999776
Q ss_pred HHCCcccCcc-eeeeccCHHHHHHHHHHHHhHHHHHHhcccCC----CCChh---HHHhhHhhhcchhHHHHHHHHHhC
Q 044791 528 KESTYVPDTR-YVLHDIDQEAKEQALLYHSERLAIAYGLISTP----ARTPL---RIIKNLRVCGDCHNAIKIMSRIVG 598 (623)
Q Consensus 528 ~~~Gi~Pd~~-t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m----~~~~~---~i~~~l~~~g~~~~a~~l~~~~~~ 598 (623)
.+. .|+.. .+..+.....+...++...|++++|..++.+. +.... .+-..+...|+.++|++++.+..+
T Consensus 494 l~l--~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 494 IEL--EKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred Hhc--CCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 543 23321 12221111122222333457888888776542 22221 234556788999999999888653
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.64 E-value=9.3e-15 Score=154.96 Aligned_cols=310 Identities=15% Similarity=0.145 Sum_probs=247.4
Q ss_pred ccccccc-----cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCC-----------------CCCCCchHHHHHHHH
Q 044791 198 PNQWNNQ-----QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCP-----------------AGDQVLPPSVADLAR 255 (623)
Q Consensus 198 p~~w~~~-----~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~-----------------~~~~~~~~~~~li~~ 255 (623)
.+.|.++ ++|+.+.|...|..... ..|+.......+.+..+ ..+.....+..|...
T Consensus 150 ida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~ 227 (966)
T KOG4626|consen 150 IDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCV 227 (966)
T ss_pred hHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchH
Confidence 3477777 78888888888876644 44543332222222111 111123344577788
Q ss_pred HHHcCCHHHHHHHHHcCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 044791 256 LCQEGKVKEAIELMDKGVKADA---SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRG-DLVLNNKVIEMYGKCGSMTDA 331 (623)
Q Consensus 256 ~~~~g~~~~A~~l~~~~~~pd~---~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~y~~Li~~y~k~g~~~~A 331 (623)
|-..|++-+|+.-|++.++.|. ..|-.|..+|...+.++.|+..|.+.... .| ..++|..|...|...|.+|-|
T Consensus 228 f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlA 305 (966)
T KOG4626|consen 228 FNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLA 305 (966)
T ss_pred HhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHH
Confidence 8899999999999998777664 57999999999999999999999888774 44 478999999999999999999
Q ss_pred HHHHHHhhcCCh---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 332 RRVFDHMADRSM---DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN-EQTFLAVFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 332 ~~lf~~m~~~~~---~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd-~~ty~~li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
+..|++..+.+. ..|+.|..++-..|++.||...|.+.+.. .|+ ..+.+.|...+.+.|.+++|..+|+...
T Consensus 306 I~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al-- 381 (966)
T KOG4626|consen 306 IDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKAL-- 381 (966)
T ss_pred HHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHH--
Confidence 999999876543 49999999999999999999999999875 443 4678899999999999999999998877
Q ss_pred cCCCCC-ccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCC
Q 044791 408 FGISPG-TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKK 485 (623)
Q Consensus 408 ~g~~p~-~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~ 485 (623)
.+.|. ...++.|...|-..|++++|+..|++++.+.|+. ..|+.|.+.|...|+++.|...+.+.....|.-.
T Consensus 382 -~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~A---- 456 (966)
T KOG4626|consen 382 -EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFA---- 456 (966)
T ss_pred -hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHH----
Confidence 56665 5678999999999999999999999999999986 6999999999999999999999999988776543
Q ss_pred CCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcce
Q 044791 486 IPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRY 538 (623)
Q Consensus 486 ~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t 538 (623)
..++.|-+.+...|.. .+|+.-++.-. .++||..-
T Consensus 457 --------eAhsNLasi~kDsGni--------~~AI~sY~~aL--klkPDfpd 491 (966)
T KOG4626|consen 457 --------EAHSNLASIYKDSGNI--------PEAIQSYRTAL--KLKPDFPD 491 (966)
T ss_pred --------HHHhhHHHHhhccCCc--------HHHHHHHHHHH--ccCCCCch
Confidence 3667777778888865 68988885443 46677643
No 15
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.60 E-value=3.6e-13 Score=154.38 Aligned_cols=318 Identities=11% Similarity=-0.029 Sum_probs=241.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHc--CCCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044791 250 VADLARLCQEGKVKEAIELMDK--GVKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG 326 (623)
Q Consensus 250 ~~li~~~~~~g~~~~A~~l~~~--~~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g 326 (623)
..++..+.+.|++++|+.+++. ...| +...+..++.++...|++++|++.++++++.. +-+...+..+..++.+.|
T Consensus 46 ~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g 124 (656)
T PRK15174 46 ILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK 124 (656)
T ss_pred HHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC
Confidence 3567788899999999999975 3334 34566677777788999999999999999863 335778889999999999
Q ss_pred CHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044791 327 SMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFES 403 (623)
Q Consensus 327 ~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~ 403 (623)
++++|+..|+++.+ .+...|..++..+...|++++|...++.+......+. ..+..+ ..+...|++++|..+++.
T Consensus 125 ~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~-~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 125 QYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRG-DMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCH-HHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 99999999999875 3455899999999999999999999999887643332 233333 347889999999999999
Q ss_pred HHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhH----HHHHHHHHHhcCC
Q 044791 404 MKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDL----EDHAEELMVDLDP 478 (623)
Q Consensus 404 m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~----A~~~~~~~~~m~~ 478 (623)
+... .-..+...+..+..++.+.|++++|+..|++++...| +...+..|...|...|+.++ |...++...++.|
T Consensus 203 ~l~~-~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 203 LLPF-FALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHhc-CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 8754 2122334455567889999999999999999766666 45778888899999999986 7888888888776
Q ss_pred CCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhH
Q 044791 479 SKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSER 558 (623)
Q Consensus 479 ~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~ 558 (623)
.. ...+..+-..+...|++ ++|+.++++..+. .|+.......+ +..+...|+
T Consensus 282 ~~------------~~a~~~lg~~l~~~g~~--------~eA~~~l~~al~l--~P~~~~a~~~L------a~~l~~~G~ 333 (656)
T PRK15174 282 DN------------VRIVTLYADALIRTGQN--------EKAIPLLQQSLAT--HPDLPYVRAMY------ARALRQVGQ 333 (656)
T ss_pred CC------------HHHHHHHHHHHHHCCCH--------HHHHHHHHHHHHh--CCCCHHHHHHH------HHHHHHCCC
Confidence 53 34677777888888888 6999999777653 46644322222 246777899
Q ss_pred HHHHHhcccCCC----CChh-H--HHhhHhhhcchhHHHHHHHHHhCC
Q 044791 559 LAIAYGLISTPA----RTPL-R--IIKNLRVCGDCHNAIKIMSRIVGR 599 (623)
Q Consensus 559 l~~A~~ll~~m~----~~~~-~--i~~~l~~~g~~~~a~~l~~~~~~~ 599 (623)
.++|...+.... .... . .-..+...|+.++|.+.+.+....
T Consensus 334 ~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 334 YTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999988776532 2211 1 223467889999999999887654
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.53 E-value=8.3e-12 Score=142.80 Aligned_cols=317 Identities=15% Similarity=0.135 Sum_probs=232.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHc--CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 044791 251 ADLARLCQEGKVKEAIELMDK--GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSM 328 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~--~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~ 328 (623)
.+...|.+.|++++|++.|++ .+.|+...|..+..+|.+.|++++|++.+++.++.. +.+...|..+..+|...|++
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~ 210 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKY 210 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 456778999999999999987 566888899999999999999999999999999853 23577899999999999999
Q ss_pred HHHHHHHHHhhcCC---------------------------------hHHHHHHHH------------------------
Q 044791 329 TDARRVFDHMADRS---------------------------------MDSWHLMIN------------------------ 351 (623)
Q Consensus 329 ~~A~~lf~~m~~~~---------------------------------~~tyn~Li~------------------------ 351 (623)
++|+..|..+...+ ..++..+..
T Consensus 211 ~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (615)
T TIGR00990 211 ADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEET 290 (615)
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccc
Confidence 99987664432110 000000000
Q ss_pred --HH----------HHcCChHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-ccc
Q 044791 352 --GY----------ADNGLGDEGLQLFEQMRKLG-LQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TEH 416 (623)
Q Consensus 352 --~~----------~~~g~~eeA~~l~~eM~~~g-~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~t 416 (623)
++ ...+++++|+++|++..+.+ ..| +...|+.+...+...|++++|+..|+... .+.|+ ...
T Consensus 291 ~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal---~l~P~~~~~ 367 (615)
T TIGR00990 291 GNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI---ELDPRVTQS 367 (615)
T ss_pred ccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHH
Confidence 00 12357899999999999865 334 44678888888999999999999999988 44565 557
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhh
Q 044791 417 YLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRT 495 (623)
Q Consensus 417 y~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t 495 (623)
|..+..++...|++++|+..|++++...| +...|..+...+...|++++|...++...++.+... ..
T Consensus 368 ~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~------------~~ 435 (615)
T TIGR00990 368 YIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI------------FS 435 (615)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH------------HH
Confidence 88888999999999999999999777666 467888999999999999999999999999876543 35
Q ss_pred HHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCC----CC
Q 044791 496 AISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTP----AR 571 (623)
Q Consensus 496 ~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m----~~ 571 (623)
+..+-..+.+.|++ ++|+..|++..+. .|+..... ...+.++...|++++|...+..- +.
T Consensus 436 ~~~la~~~~~~g~~--------~eA~~~~~~al~~--~P~~~~~~------~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 436 HIQLGVTQYKEGSI--------ASSMATFRRCKKN--FPEAPDVY------NYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHHHHHCCCH--------HHHHHHHHHHHHh--CCCChHHH------HHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 55666777788887 7999999776643 35532211 12234667778888887665441 11
Q ss_pred -Chh--H---HHh-h---HhhhcchhHHHHHHHHHhCC
Q 044791 572 -TPL--R---IIK-N---LRVCGDCHNAIKIMSRIVGR 599 (623)
Q Consensus 572 -~~~--~---i~~-~---l~~~g~~~~a~~l~~~~~~~ 599 (623)
... . ++. . +...|+..+|.+++.+...-
T Consensus 500 ~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 500 TKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred cccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 110 1 111 1 12247888899988876543
No 17
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.50 E-value=1.2e-11 Score=150.86 Aligned_cols=338 Identities=13% Similarity=0.092 Sum_probs=230.4
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCC--CCCH---HH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGV--KADA---SC 279 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~--~pd~---~t 279 (623)
..|++++|+..|++..+ ..|+ +...+..|..+|.+.|++++|+..|++.+ .|+. ..
T Consensus 281 ~~g~~~~A~~~l~~aL~--~~P~-----------------~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~ 341 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVR--ANPK-----------------DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDK 341 (1157)
T ss_pred HCCCHHHHHHHHHHHHH--hCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhH
Confidence 78999999999998844 2222 22345577888899999999999997633 2322 11
Q ss_pred H------------HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC---hH
Q 044791 280 F------------YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRS---MD 344 (623)
Q Consensus 280 y------------~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~---~~ 344 (623)
+ ..+...+.+.|++++|++.|+++++.. +.+...+..|..+|...|++++|++.|+++.+.+ ..
T Consensus 342 ~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~ 420 (1157)
T PRK11447 342 WESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTN 420 (1157)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 1 122446778899999999999998863 3356778888999999999999999999886421 11
Q ss_pred HHH------------------------------------------HHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHH
Q 044791 345 SWH------------------------------------------LMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTF 381 (623)
Q Consensus 345 tyn------------------------------------------~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty 381 (623)
.+. .+...+...|++++|++.|++.++. .| +...+
T Consensus 421 a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~ 498 (1157)
T PRK11447 421 AVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLT 498 (1157)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHH
Confidence 222 2334456789999999999998875 44 45677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhH----------------------------------------
Q 044791 382 LAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGL---------------------------------------- 420 (623)
Q Consensus 382 ~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~L---------------------------------------- 420 (623)
..+...|.+.|++++|+..|+++.+. .| +...+..+
T Consensus 499 ~~LA~~~~~~G~~~~A~~~l~~al~~---~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 499 YRLAQDLRQAGQRSQADALMRRLAQQ---KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 78888899999999999999988743 23 22222222
Q ss_pred ----HHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhH
Q 044791 421 ----VGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTA 496 (623)
Q Consensus 421 ----i~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~ 496 (623)
...+...|+.++|+++++. - ..+...+..|...+.+.|+.++|++.++.+.+..|.+. ...
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~~-~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~------------~a~ 640 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLRQ-Q--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNA------------DAR 640 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh-C--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------------HHH
Confidence 2334445555555555554 1 22445566777888899999999999999988876643 366
Q ss_pred HHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCCCC-----
Q 044791 497 ISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPAR----- 571 (623)
Q Consensus 497 ~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~~----- 571 (623)
..+...+...|++ ++|++.|+...+ ..|+.... ....+.++...|+.++|..+++....
T Consensus 641 ~~la~~~~~~g~~--------~eA~~~l~~ll~--~~p~~~~~------~~~la~~~~~~g~~~eA~~~~~~al~~~~~~ 704 (1157)
T PRK11447 641 LGLIEVDIAQGDL--------AAARAQLAKLPA--TANDSLNT------QRRVALAWAALGDTAAAQRTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHHHHHHHCCCH--------HHHHHHHHHHhc--cCCCChHH------HHHHHHHHHhCCCHHHHHHHHHHHhhhCccC
Confidence 7778888888887 699999975543 34543322 12223456677888888877765321
Q ss_pred Ch---hH-HH----hhHhhhcchhHHHHHHHHHhC
Q 044791 572 TP---LR-II----KNLRVCGDCHNAIKIMSRIVG 598 (623)
Q Consensus 572 ~~---~~-i~----~~l~~~g~~~~a~~l~~~~~~ 598 (623)
.+ .. +. ..+...|+..+|++.+...+.
T Consensus 705 ~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 705 PPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11 11 22 234677889999998888764
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.46 E-value=2.2e-11 Score=148.59 Aligned_cols=314 Identities=12% Similarity=0.061 Sum_probs=192.9
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCC--CCC-HHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGV--KAD-ASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~--~pd-~~ty~ 281 (623)
..|++++|++.|+++.. ..|+ ....+..|...+...|++++|++.|++.+ .|+ ...+.
T Consensus 363 ~~g~~~eA~~~~~~Al~--~~P~-----------------~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~ 423 (1157)
T PRK11447 363 KANNLAQAERLYQQARQ--VDNT-----------------DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVR 423 (1157)
T ss_pred HCCCHHHHHHHHHHHHH--hCCC-----------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 78999999999998844 1221 12344467788899999999999997633 343 33333
Q ss_pred HHHHH------------------------------------------HhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044791 282 TLFEL------------------------------------------CGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVI 319 (623)
Q Consensus 282 ~Ll~~------------------------------------------~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li 319 (623)
.+... +...|++++|+++|++.++... -+..++..+.
T Consensus 424 ~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA 502 (1157)
T PRK11447 424 GLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLA 502 (1157)
T ss_pred HHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 33333 3345566666666666655321 1345555566
Q ss_pred HHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH---------HHHHHHHHH
Q 044791 320 EMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE---------QTFLAVFSA 387 (623)
Q Consensus 320 ~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~---------~ty~~li~a 387 (623)
.+|.+.|++++|+.+|+++.+. +...+..+...+...|+.++|+..++++......++. ..+..+...
T Consensus 503 ~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~ 582 (1157)
T PRK11447 503 QDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR 582 (1157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence 6666666666666666655431 2233333444455556666666666554322111111 112234555
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHH
Q 044791 388 CGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLE 466 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A 466 (623)
+...|+.++|+++++. ...+...+..|...|.+.|+.++|+++|++++...| +...+..++..|...|+.++|
T Consensus 583 l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 583 LRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 6677777777777651 123455677888999999999999999999777677 567899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcc-cCcceeeeccCH
Q 044791 467 DHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYV-PDTRYVLHDIDQ 545 (623)
Q Consensus 467 ~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~-Pd~~t~~~li~~ 545 (623)
++.++.+.+..+... .....+-.++...|++ ++|+++|+++....-. |... ...++
T Consensus 657 ~~~l~~ll~~~p~~~------------~~~~~la~~~~~~g~~--------~eA~~~~~~al~~~~~~~~~~-~~a~~-- 713 (1157)
T PRK11447 657 RAQLAKLPATANDSL------------NTQRRVALAWAALGDT--------AAAQRTFNRLIPQAKSQPPSM-ESALV-- 713 (1157)
T ss_pred HHHHHHHhccCCCCh------------HHHHHHHHHHHhCCCH--------HHHHHHHHHHhhhCccCCcch-hhHHH--
Confidence 999998877654432 2334445556677777 6999999887654311 1100 00000
Q ss_pred HHHHHHHHHHHhHHHHHHhccc
Q 044791 546 EAKEQALLYHSERLAIAYGLIS 567 (623)
Q Consensus 546 ~~k~~~~~~~~g~l~~A~~ll~ 567 (623)
....+.++...|+.++|...++
T Consensus 714 ~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 714 LRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 1111234556677777776644
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.45 E-value=1.4e-10 Score=135.62 Aligned_cols=363 Identities=12% Similarity=0.068 Sum_probs=242.6
Q ss_pred ccccc--cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC--CCC
Q 044791 200 QWNNQ--QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG--VKA 275 (623)
Q Consensus 200 ~w~~~--~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~~p 275 (623)
.|..+ ..|+.++|+++|.+... . .......+..+...+.+.|++++|+++|++. ..|
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~--~-----------------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRV--H-----------------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh--h-----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 57755 79999999999998732 0 0111223557778889999999999999873 334
Q ss_pred -CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHH
Q 044791 276 -DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMIN 351 (623)
Q Consensus 276 -d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~ 351 (623)
+...+..++.++...|++++|+.+++++++.. +.+.. +..+..++...|+.++|+.+|+++.+. +...+..+..
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~ 158 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQ 158 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 35667788888999999999999999998862 33556 888899999999999999999988763 3335555666
Q ss_pred HHHHcCChHHHHHHHH----------------------------------------------HHHHc-CCCCCHH-HH--
Q 044791 352 GYADNGLGDEGLQLFE----------------------------------------------QMRKL-GLQPNEQ-TF-- 381 (623)
Q Consensus 352 ~~~~~g~~eeA~~l~~----------------------------------------------eM~~~-g~~Pd~~-ty-- 381 (623)
++...|..++|+..++ .+.+. ...|+.. .+
T Consensus 159 ~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~ 238 (765)
T PRK10049 159 ALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQR 238 (765)
T ss_pred HHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHH
Confidence 6666666655554443 44422 1122221 11
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-----HHHHHHHH
Q 044791 382 --LAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-----AEFWEALR 454 (623)
Q Consensus 382 --~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-----~~ty~~Li 454 (623)
...+.++...|++++|+..|+.+.+.....|+.. -..+..+|...|++++|+.+|++++...|. ...+..|.
T Consensus 239 a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 239 ARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 1113345677999999999999986521123321 122577899999999999999995554443 24566677
Q ss_pred HHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCch---hhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCC
Q 044791 455 NYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKK---RTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKEST 531 (623)
Q Consensus 455 ~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~---~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~G 531 (623)
.++...|++++|...++.+.+..+.......+....|+. ..+..+...+...|++ ++|+++|+++...
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~--------~eA~~~l~~al~~- 388 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDL--------PQAEMRARELAYN- 388 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHh-
Confidence 788999999999999998888765432211122233453 2334455566677877 6999999888654
Q ss_pred cccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCC----CCC-hhHHH--hhHhhhcchhHHHHHHHHHhCCc
Q 044791 532 YVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTP----ART-PLRII--KNLRVCGDCHNAIKIMSRIVGRE 600 (623)
Q Consensus 532 i~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m----~~~-~~~i~--~~l~~~g~~~~a~~l~~~~~~~~ 600 (623)
.|+.... ....+.++...|+.++|+..+++. +.. ...+. .++...|++++|.+++.++.++.
T Consensus 389 -~P~n~~l------~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 389 -APGNQGL------RIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred -CCCCHHH------HHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 4555321 122334666778888888777653 221 12222 23466689999999999887654
No 20
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.41 E-value=1.3e-10 Score=119.33 Aligned_cols=229 Identities=17% Similarity=0.260 Sum_probs=165.4
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHc----CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044791 245 VLPPSVADLARLCQEGKVKEAIELMDK----GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIE 320 (623)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~A~~l~~~----~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~ 320 (623)
+..++..||.++|+--..+.|.++|++ ..+.+..+||.||.+-+ +....+++.+|+...+.||..|+|+|+.
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHHH
Confidence 445677889999998889999988853 56788888998888654 3334788888988888999999999999
Q ss_pred HHHHcCCHHHHH----HHHHHhhcC----ChHHHHHHHHHHHHcCChHH-HHHHHHHHH----HcCCCC----CHHHHHH
Q 044791 321 MYGKCGSMTDAR----RVFDHMADR----SMDSWHLMINGYADNGLGDE-GLQLFEQMR----KLGLQP----NEQTFLA 383 (623)
Q Consensus 321 ~y~k~g~~~~A~----~lf~~m~~~----~~~tyn~Li~~~~~~g~~ee-A~~l~~eM~----~~g~~P----d~~ty~~ 383 (623)
+.++.|+++.|. +++.+|++- ...+|..+|..+++.++..+ |..+..+.. .+.++| |..-|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 999999877654 556677654 44488888888888877644 444444443 223333 4566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCC---CCC---ccchhhHHHHHHhcCCHHHHHHHHHhhCC--CCCCHHHHHHHHH
Q 044791 384 VFSACGSADAIEEAFIHFESMKSEFGI---SPG---TEHYLGLVGVLGKCGHLFEAQQFIEQKLP--FEPTAEFWEALRN 455 (623)
Q Consensus 384 li~a~~~~g~~e~A~~l~~~m~~~~g~---~p~---~~ty~~Li~~~~k~g~~e~A~~lf~~~m~--~~Pd~~ty~~Li~ 455 (623)
.++.|.+..+.+.|..+..-+....+. .++ ..-|..+..+.|.....+.-+..|+.++. ..|+..+...+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 888888888888888888766643221 222 23466677788888888888888888333 5577778888888
Q ss_pred HHHHcCChhHHHHHHHHHHhcC
Q 044791 456 YARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 456 a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
+.-..|.++...+++..+.+.+
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhh
Confidence 8888888887777776665544
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.40 E-value=1.8e-10 Score=136.04 Aligned_cols=226 Identities=14% Similarity=0.069 Sum_probs=154.1
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--CChHHHHHHHHHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD--RSMDSWHLMINGY 353 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~--~~~~tyn~Li~~~ 353 (623)
+...|..+..++.. ++.++|+..+.+.... .|+......+..++...|++++|+..|+++.. ++...+..+..++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 45567777766665 6777788877776663 35544433344445678888888888887654 2334566667777
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHH
Q 044791 354 ADNGLGDEGLQLFEQMRKLGLQPNE-QTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFE 432 (623)
Q Consensus 354 ~~~g~~eeA~~l~~eM~~~g~~Pd~-~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~ 432 (623)
.+.|++++|..+|++.++.. |+. ..+..+...+...|++++|...|++.. .+.|+...|..+..++.+.|+.++
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHH
Confidence 88888888888888887653 333 233333344455688888888888777 445667777777888888888888
Q ss_pred HHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccC
Q 044791 433 AQQFIEQKLPFEPT-AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRN 511 (623)
Q Consensus 433 A~~lf~~~m~~~Pd-~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~ 511 (623)
|+..|++++...|+ ...++.+..++...|+.++|+.+++...+..|... ..+..+-.++...|++
T Consensus 628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~------------~a~~nLA~al~~lGd~-- 693 (987)
T PRK09782 628 AVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP------------ALIRQLAYVNQRLDDM-- 693 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHCCCH--
Confidence 88888886666674 45666666678888888888888888877766543 3555666666777766
Q ss_pred CcccchHHHHHHHHHHHH
Q 044791 512 PTLYRDDEKLKALNQMKE 529 (623)
Q Consensus 512 ~~~~~~~eal~~~~~M~~ 529 (623)
++|+..|++..+
T Consensus 694 ------~eA~~~l~~Al~ 705 (987)
T PRK09782 694 ------AATQHYARLVID 705 (987)
T ss_pred ------HHHHHHHHHHHh
Confidence 578877765553
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.38 E-value=2.5e-10 Score=133.61 Aligned_cols=315 Identities=10% Similarity=-0.007 Sum_probs=220.2
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCC-HHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKAD-ASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd-~~ty~ 281 (623)
..|++++|+++|++... ..|+. ......++..+...|++++|+.++++ ...|+ .. +.
T Consensus 61 ~~g~~~~A~~~~~~al~--~~P~~-----------------~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~ 120 (765)
T PRK10049 61 NLKQWQNSLTLWQKALS--LEPQN-----------------DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LL 120 (765)
T ss_pred HcCCHHHHHHHHHHHHH--hCCCC-----------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HH
Confidence 89999999999998733 12221 12234777888999999999999976 33453 45 88
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH------------------------
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDH------------------------ 337 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~------------------------ 337 (623)
.+..++...|+.++|+..++++++... -+...+..+..++.+.|..++|++.++.
T Consensus 121 ~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~ 199 (765)
T PRK10049 121 ALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSF 199 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 888899999999999999999999632 2556666777777777777766655553
Q ss_pred ----------------------hhcC---ChH-------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHH
Q 044791 338 ----------------------MADR---SMD-------SWHLMINGYADNGLGDEGLQLFEQMRKLGLQ-PNEQTFLAV 384 (623)
Q Consensus 338 ----------------------m~~~---~~~-------tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~-Pd~~ty~~l 384 (623)
+.+. +.. .....+.++...|++++|+..|+++++.+-. |+.. -..+
T Consensus 200 ~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a-~~~l 278 (765)
T PRK10049 200 MPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWA-QRWV 278 (765)
T ss_pred ccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHH-HHHH
Confidence 2210 100 0111133456779999999999999987642 4432 2235
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCC--CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-------------C---
Q 044791 385 FSACGSADAIEEAFIHFESMKSEFGISP--GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-------------T--- 446 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~~~m~~~~g~~p--~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-------------d--- 446 (623)
..+|...|+.++|+.+|+++.......+ ....+..|..++...|++++|.++++++....| +
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 7789999999999999999874311111 123455667788999999999999998444433 2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHH
Q 044791 447 AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQ 526 (623)
Q Consensus 447 ~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~ 526 (623)
...+..+...+...|+.++|+++++.+.+..|.+. ..+..+...+...|++ ++|++.+++
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~------------~l~~~lA~l~~~~g~~--------~~A~~~l~~ 418 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQ------------GLRIDYASVLQARGWP--------RAAENELKK 418 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHhcCCH--------HHHHHHHHH
Confidence 23455677788999999999999999988776643 3566777777778877 699999976
Q ss_pred HHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCC
Q 044791 527 MKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTP 569 (623)
Q Consensus 527 M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m 569 (623)
..+ +.||...+.... +......+++++|..+++..
T Consensus 419 al~--l~Pd~~~l~~~~------a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 419 AEV--LEPRNINLEVEQ------AWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred HHh--hCCCChHHHHHH------HHHHHHhCCHHHHHHHHHHH
Confidence 655 447765432222 13566777888888776543
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.36 E-value=1.7e-10 Score=136.19 Aligned_cols=228 Identities=11% Similarity=0.020 Sum_probs=183.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHc--CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDK--GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k 324 (623)
..+..+..++.. ++.++|+..|.+ ...|+......+..++...|++++|+..|+++... .|+...+..+..++.+
T Consensus 478 ~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~ 554 (987)
T PRK09782 478 AAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQA 554 (987)
T ss_pred HHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHH
Confidence 344566666665 899999997754 44576555445555667899999999999998664 4555567778889999
Q ss_pred cCCHHHHHHHHHHhhcCChHHHH---HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044791 325 CGSMTDARRVFDHMADRSMDSWH---LMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHF 401 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~~~~~tyn---~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~ 401 (623)
.|++++|+.+|+...+.+...++ .+...+.+.|++++|+..|++.++. .|+...|..+..++.+.|++++|+..|
T Consensus 555 ~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 555 AGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred CCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999998876544333 3333445569999999999999975 567889999999999999999999999
Q ss_pred HHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 402 ESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 402 ~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
++.. .+.| +...++.+..++...|+.++|+++|++++...| +...+..+..++...|++++|+..++...++.++
T Consensus 633 ~~AL---~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 633 RAAL---ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHH---HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9988 4456 466778888899999999999999999887777 5578889999999999999999999999999887
Q ss_pred CCC
Q 044791 480 KAD 482 (623)
Q Consensus 480 ~~~ 482 (623)
...
T Consensus 710 ~a~ 712 (987)
T PRK09782 710 QAL 712 (987)
T ss_pred Cch
Confidence 654
No 24
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=7.2e-11 Score=127.71 Aligned_cols=230 Identities=13% Similarity=0.035 Sum_probs=188.4
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHc----------C--------------------------C-CCCHHHHHHHHHHHh
Q 044791 246 LPPSVADLARLCQEGKVKEAIELMDK----------G--------------------------V-KADASCFYTLFELCG 288 (623)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~A~~l~~~----------~--------------------------~-~pd~~ty~~Ll~~~~ 288 (623)
..+...+..+|...+++++|+++|+. | . +-.+.+|.++.++|.
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS 432 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence 34555788899999999999999841 1 1 123478999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHH---HHHHHHHHcCChHHHHH
Q 044791 289 NPKWYENAKKVHDYFLQSTIRG-DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWH---LMINGYADNGLGDEGLQ 364 (623)
Q Consensus 289 ~~g~~~~A~~l~~~m~~~g~~p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn---~Li~~~~~~g~~eeA~~ 364 (623)
-.++.+.|++.|++.+. +.| ..++|+.+..-+....++|+|...|+.....|...|| -|.-.|.+.++++.|+-
T Consensus 433 LQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~ 510 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEF 510 (638)
T ss_pred hhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHH
Confidence 99999999999999988 455 6899999999999999999999999999988887555 46777999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCC
Q 044791 365 LFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPF 443 (623)
Q Consensus 365 l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~ 443 (623)
.|++.++.+.. +.+....+...+-+.|+.|+|+.+|++.. .++| |...--..+..+...++.++|+..+++.-++
T Consensus 511 ~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~ 586 (638)
T KOG1126|consen 511 HFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNPLCKYHRASILFSLGRYVEALQELEELKEL 586 (638)
T ss_pred HHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHh
Confidence 99999885322 55666677778889999999999999988 4555 4444444567788899999999999993346
Q ss_pred CCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC
Q 044791 444 EPTA-EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKA 481 (623)
Q Consensus 444 ~Pd~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~ 481 (623)
.|+. ..|..|...|.+.|+.+.|..-+-.+.+++|++.
T Consensus 587 vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 587 VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 6765 5677777899999999999999999999999875
No 25
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.32 E-value=6.6e-11 Score=127.97 Aligned_cols=270 Identities=17% Similarity=0.163 Sum_probs=199.9
Q ss_pred CCHHHHHHHHHc--CCCCC-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHH-HHHH
Q 044791 260 GKVKEAIELMDK--GVKAD-ASCFYTLFELCGNPKWYENAKKVHDYFLQST--IRGDLVLNNKVIEMYGKCGSMT-DARR 333 (623)
Q Consensus 260 g~~~~A~~l~~~--~~~pd-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~~y~~Li~~y~k~g~~~-~A~~ 333 (623)
-+..+|+.+|.+ ...++ .....-+..+|...+++++|+++|+.+++.. ..-+..+|.+++--+-+.=.+. -|..
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~ 412 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD 412 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence 356777777765 12233 3456678889999999999999999998752 1236889998886554422211 1222
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 044791 334 VFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP 412 (623)
Q Consensus 334 lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p 412 (623)
+.+.+ .....+|-++.++|.-.++.+.|++.|++.... .| .+++|+.+..-+.....+|.|...|+..+ ++
T Consensus 413 Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~-- 484 (638)
T KOG1126|consen 413 LIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GV-- 484 (638)
T ss_pred HHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cC--
Confidence 33222 245669999999999999999999999999874 56 77999999999999999999999998766 33
Q ss_pred Cccchh---hHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCC
Q 044791 413 GTEHYL---GLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPT 488 (623)
Q Consensus 413 ~~~ty~---~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~ 488 (623)
|..+|| .|.-.|.|.++++.|+-.|++++++.| +.+....+...+.+.|+.|+|...+++...|++.+..
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l------ 558 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPL------ 558 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCch------
Confidence 455555 466779999999999999999889888 5577777888899999999999999999999998764
Q ss_pred CCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhc
Q 044791 489 PPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGL 565 (623)
Q Consensus 489 ~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~l 565 (623)
+ .+- ....+...+++ +||+..|+++++ ++|+..+...++. -.+.+.|..+.|..-
T Consensus 559 --~-~~~---~~~il~~~~~~--------~eal~~LEeLk~--~vP~es~v~~llg------ki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 559 --C-KYH---RASILFSLGRY--------VEALQELEELKE--LVPQESSVFALLG------KIYKRLGNTDLALLH 613 (638)
T ss_pred --h-HHH---HHHHHHhhcch--------HHHHHHHHHHHH--hCcchHHHHHHHH------HHHHHHccchHHHHh
Confidence 1 111 11222233444 699999999876 5788887777664 344555666666543
No 26
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.29 E-value=3.8e-09 Score=122.60 Aligned_cols=358 Identities=11% Similarity=0.026 Sum_probs=221.8
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHH-HHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKADASCF-YTL 283 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty-~~L 283 (623)
++|+++.|++.|+++.+ ..|... .....++..+...|+.++|+..+++-+.|+...+ ..+
T Consensus 46 r~Gd~~~Al~~L~qaL~--~~P~~~-----------------~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~ll 106 (822)
T PRK14574 46 RAGDTAPVLDYLQEESK--AGPLQS-----------------GQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLA 106 (822)
T ss_pred hCCCHHHHHHHHHHHHh--hCccch-----------------hhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHH
Confidence 89999999999998844 222210 1111556666777888888888877666543322 222
Q ss_pred --HHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH--HHHHHHHHHHHcCCh
Q 044791 284 --FELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD--SWHLMINGYADNGLG 359 (623)
Q Consensus 284 --l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~--tyn~Li~~~~~~g~~ 359 (623)
...+...|++++|+++|+++++... -+...+..|+..|...++.++|++.++++...+.. .|-.++..+...++.
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchH
Confidence 4466667888888888888877532 24566666777777778888888888777654443 332222223334455
Q ss_pred HHHHHHHHHHHHcCC-----------------------------------------------------------------
Q 044791 360 DEGLQLFEQMRKLGL----------------------------------------------------------------- 374 (623)
Q Consensus 360 eeA~~l~~eM~~~g~----------------------------------------------------------------- 374 (623)
.+|++.+++|.+...
T Consensus 186 ~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 186 YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 557777777765311
Q ss_pred ------------------CCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHH
Q 044791 375 ------------------QPNEQ-----TFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLF 431 (623)
Q Consensus 375 ------------------~Pd~~-----ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e 431 (623)
.|... +..-.+-++...|+..++++.|+.|... +...-..+--++.++|...+..+
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~-~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAE-GYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhc-CCCCCHHHHHHHHHHHHhcCCcH
Confidence 01000 0011234555677788888888888765 54433345667889999999999
Q ss_pred HHHHHHHhhCCCC-------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCC--CCCCCCCchhhHH-HHhh
Q 044791 432 EAQQFIEQKLPFE-------PTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPK--KIPTPPPKKRTAI-SILD 501 (623)
Q Consensus 432 ~A~~lf~~~m~~~-------Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~--~~~~~~p~~~t~~-~li~ 501 (623)
+|+.+|+.++.-. ++......|.-+|...+++++|..+++.+.+-.|..+... ..+...||-..+. .++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 9999999843311 2334467889999999999999999999887544211101 1123456666664 3455
Q ss_pred hcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCCC-CCh----hHH
Q 044791 502 GKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPA-RTP----LRI 576 (623)
Q Consensus 502 ~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~-~~~----~~i 576 (623)
.+...|++ .+|++.++++... .|.-.-+... ..++....|+..+|...++... ..| ..+
T Consensus 425 ~~~~~gdl--------~~Ae~~le~l~~~--aP~n~~l~~~------~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~ 488 (822)
T PRK14574 425 SLVALNDL--------PTAQKKLEDLSST--APANQNLRIA------LASIYLARDLPRKAEQELKAVESLAPRSLILER 488 (822)
T ss_pred HHHHcCCH--------HHHHHHHHHHHHh--CCCCHHHHHH------HHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHH
Confidence 57777877 6999999888543 3443322222 2245566677777777765422 111 122
Q ss_pred --HhhHhhhcchhHHHHHHHHHhCC
Q 044791 577 --IKNLRVCGDCHNAIKIMSRIVGR 599 (623)
Q Consensus 577 --~~~l~~~g~~~~a~~l~~~~~~~ 599 (623)
..+...-|+.++|.+++..+.++
T Consensus 489 ~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 489 AQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 23345668889998888776433
No 27
>PF13041 PPR_2: PPR repeat family
Probab=99.28 E-value=9.5e-12 Score=92.89 Aligned_cols=50 Identities=26% Similarity=0.560 Sum_probs=44.8
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044791 341 RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS 390 (623)
Q Consensus 341 ~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~ 390 (623)
||+++||+||.+|++.|++++|+++|++|++.|+.||..||++||++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57889999999999999999999999999999999999999999999875
No 28
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.26 E-value=4.5e-12 Score=130.52 Aligned_cols=251 Identities=18% Similarity=0.192 Sum_probs=103.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHcC---C-CCCHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044791 251 ADLARLCQEGKVKEAIELMDKG---V-KADASC-FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~---~-~pd~~t-y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~ 325 (623)
.+-..+.+.|++++|+++++++ . .|+... |..+...+-..++++.|++.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 4556677899999999999653 3 344444 445555666788999999999999887544 56677777777 788
Q ss_pred CCHHHHHHHHHHhhc--CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044791 326 GSMTDARRVFDHMAD--RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLG-LQPNEQTFLAVFSACGSADAIEEAFIHFE 402 (623)
Q Consensus 326 g~~~~A~~lf~~m~~--~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g-~~Pd~~ty~~li~a~~~~g~~e~A~~l~~ 402 (623)
++.++|.+++++.-+ .+...+..++..+.+.++++++..++++..... ...+...|..+...+.+.|+.++|+++++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999887643 345577788888999999999999999987533 34577788888888999999999999999
Q ss_pred HHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 403 SMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-FEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 403 ~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
+..+ ..| |....+.++..+...|+.+++.++++.... ...|...|..+..+|...|+.++|...++......+.+
T Consensus 171 ~al~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 171 KALE---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHH---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHH---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 9884 456 466788899999999999998777776222 23355677888899999999999999999988876553
Q ss_pred CCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHH
Q 044791 481 ADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQ 526 (623)
Q Consensus 481 ~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~ 526 (623)
......+.+++...|+. ++|+.+.++
T Consensus 248 ------------~~~~~~~a~~l~~~g~~--------~~A~~~~~~ 273 (280)
T PF13429_consen 248 ------------PLWLLAYADALEQAGRK--------DEALRLRRQ 273 (280)
T ss_dssp ------------HHHHHHHHHHHT----------------------
T ss_pred ------------ccccccccccccccccc--------ccccccccc
Confidence 44666777888888877 588877643
No 29
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=99.25 E-value=3.5e-12 Score=112.50 Aligned_cols=86 Identities=66% Similarity=1.146 Sum_probs=73.8
Q ss_pred HHHHHHHHCCcccCcceeeeccCHHHH--------HHHHHHHHhHHHHHHhcccCCCCChhHHHhhH-hhhcchhHHHHH
Q 044791 522 KALNQMKESTYVPDTRYVLHDIDQEAK--------EQALLYHSERLAIAYGLISTPARTPLRIIKNL-RVCGDCHNAIKI 592 (623)
Q Consensus 522 ~~~~~M~~~Gi~Pd~~t~~~li~~~~k--------~~~~~~~~g~l~~A~~ll~~m~~~~~~i~~~l-~~~g~~~~a~~l 592 (623)
++..+|...|+.|+.......++...+ ...+..|+++++.|++++.. ++++++ ++|+|||++.|+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAiafgli~~------~vvkn~~RvC~DCH~~~K~ 95 (116)
T PF14432_consen 22 ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAIAFGLINT------RVVKNLKRVCGDCHSFIKF 95 (116)
T ss_pred HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHHHhcccce------eEEecCCccchHHHHHHHH
Confidence 566778888888888876666654433 34678899999999999877 788998 999999999999
Q ss_pred HHHHhCCceeeecCCcccccc
Q 044791 593 MSRIVGRELIVRDNKRFHHFK 613 (623)
Q Consensus 593 ~~~~~~~~~~~rd~~~~~~~~ 613 (623)
++++.+|+|++||++|||||+
T Consensus 96 iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 96 ISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred HHHHHCeEEEEeCCCeeeeCC
Confidence 999999999999999999996
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=1.2e-09 Score=112.27 Aligned_cols=226 Identities=13% Similarity=0.151 Sum_probs=170.6
Q ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh----cCCh
Q 044791 268 LMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMA----DRSM 343 (623)
Q Consensus 268 l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~----~~~~ 343 (623)
++-+-..-+..+|.+||.++|+-..++.|.++|++-.......+..+||.||.+-.-... .+++.+|. .+|+
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNL 273 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCch
Confidence 333444456789999999999999999999999999888788899999999987654333 55666664 5899
Q ss_pred HHHHHHHHHHHHcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhhc---CCCC---
Q 044791 344 DSWHLMINGYADNGLGDE----GLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIE-EAFIHFESMKSEF---GISP--- 412 (623)
Q Consensus 344 ~tyn~Li~~~~~~g~~ee----A~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e-~A~~l~~~m~~~~---g~~p--- 412 (623)
.|+|+++.+..+.|+++. |++++.||++.|+.|+..+|..+|.-+++.++.. .|..++.++..+. .++|
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 999999999999998765 5778999999999999999999999998887763 3444444444221 3333
Q ss_pred -CccchhhHHHHHHhcCCHHHHHHHHHhhCC-------CCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC
Q 044791 413 -GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-------FEPTA---EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKA 481 (623)
Q Consensus 413 -~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-------~~Pd~---~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~ 481 (623)
|..-|..-++.|.+..+.+-|..+-.- ++ +.|+. .-|..+..+.|.....+ ..+..+..|.|+-.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~l-l~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~---~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGL-LKTGDNWKFIGPDQHRNFYYRKFFDLICQMESID---VTLKWYEDLVPSAY 429 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHH-HHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhcccee
Confidence 233455667778888888888888665 32 22332 34566777777777776 77888888888887
Q ss_pred CCCCCCCCCCchhhHHHHhhhcCccccc
Q 044791 482 DPKKIPTPPPKKRTAISILDGKSRLVEF 509 (623)
Q Consensus 482 ~~~~~~~~~p~~~t~~~li~~~~~~~~~ 509 (623)
. |+..+-..++.+....+++
T Consensus 430 ~--------p~~~~m~~~lrA~~v~~~~ 449 (625)
T KOG4422|consen 430 F--------PHSQTMIHLLRALDVANRL 449 (625)
T ss_pred c--------CCchhHHHHHHHHhhcCcc
Confidence 7 8888888888887777765
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.23 E-value=6.8e-11 Score=121.72 Aligned_cols=246 Identities=17% Similarity=0.184 Sum_probs=111.0
Q ss_pred cCCChHHHHHHHHHh-cCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCCC---CHHHH
Q 044791 205 QNQGYPQARNSYQQV-SPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKA---DASCF 280 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~p---d~~ty 280 (623)
+.|++++|++++++. .. ...|+.. ..+. .+...+...+++++|++.+++-+.. +...+
T Consensus 20 ~~~~~~~Al~~L~~~~~~-~~~~~~~-~~~~----------------~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~ 81 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQK-IAPPDDP-EYWR----------------LLADLAWSLGDYDEAIEAYEKLLASDKANPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccc-ccccccc-cccc----------------ccccccccccccccccccccccccccccccccc
Confidence 789999999999643 22 0011111 1111 2222345678999999999864433 33457
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-----CChHHHHHHHHHHHH
Q 044791 281 YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD-----RSMDSWHLMINGYAD 355 (623)
Q Consensus 281 ~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~-----~~~~tyn~Li~~~~~ 355 (623)
..++.. ...+++++|.+++.+..+.. ++...+..++..+.+.++++++.++++++.. .+...|..+...+.+
T Consensus 82 ~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 82 ERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred cccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 777777 78899999999998776543 4667778899999999999999999998753 355588889999999
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHH
Q 044791 356 NGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQ 434 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~ 434 (623)
.|+.++|+++|++.++. .| |....+.++..+...|+.+++.++++...+. ...|...+..+..+|...|+.++|+
T Consensus 159 ~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al 234 (280)
T PF13429_consen 159 LGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEAL 234 (280)
T ss_dssp CCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHH
T ss_pred cCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccc
Confidence 99999999999999986 56 4677888999999999999999999988865 2456677889999999999999999
Q ss_pred HHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 435 QFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 435 ~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
.+|++.....| |......+..++...|+.++|..+.+.+.+
T Consensus 235 ~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 235 EYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccc
Confidence 99999665556 677778888999999999998888776544
No 32
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.22 E-value=2.1e-09 Score=116.37 Aligned_cols=274 Identities=13% Similarity=0.062 Sum_probs=197.3
Q ss_pred cCCHHHHHHHHHcCCCC--CHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCCHHHHHH
Q 044791 259 EGKVKEAIELMDKGVKA--DASC-FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNN--KVIEMYGKCGSMTDARR 333 (623)
Q Consensus 259 ~g~~~~A~~l~~~~~~p--d~~t-y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~--~Li~~y~k~g~~~~A~~ 333 (623)
.|++++|++++.++... +... |-....+..+.|+++.|.+.+.++.+ ..|+...+- .....+...|+.++|+.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 69999999998754332 2333 33334455889999999999999987 455654333 44678899999999999
Q ss_pred HHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 044791 334 VFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE-------QTFLAVFSACGSADAIEEAFIHFES 403 (623)
Q Consensus 334 lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~-------~ty~~li~a~~~~g~~e~A~~l~~~ 403 (623)
.++++.+. +...+..+...|.+.|++++|.+++..+.+.+...+. .+|..++.......+.+...++++.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 99998764 4558889999999999999999999999988765332 2344444444455566777777777
Q ss_pred HHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCC
Q 044791 404 MKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADP 483 (623)
Q Consensus 404 m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~ 483 (623)
+.+. ...+......+..++...|+.++|.+++++.+...+|.... ++.+.+..++.+++.+..+.+.+..|++.
T Consensus 255 lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~-- 328 (398)
T PRK10747 255 QSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP-- 328 (398)
T ss_pred CCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH--
Confidence 6543 33466777888999999999999999999977655555222 33444456888888888887777665532
Q ss_pred CCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHH
Q 044791 484 KKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAY 563 (623)
Q Consensus 484 ~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~ 563 (623)
....++=..|.+.+++ ++|.+.|+...+. .|+...+..+.. ++.+.|+.++|.
T Consensus 329 ----------~l~l~lgrl~~~~~~~--------~~A~~~le~al~~--~P~~~~~~~La~-------~~~~~g~~~~A~ 381 (398)
T PRK10747 329 ----------LLWSTLGQLLMKHGEW--------QEASLAFRAALKQ--RPDAYDYAWLAD-------ALDRLHKPEEAA 381 (398)
T ss_pred ----------HHHHHHHHHHHHCCCH--------HHHHHHHHHHHhc--CCCHHHHHHHHH-------HHHHcCCHHHHH
Confidence 2455666778888888 6999999877754 588777655543 667777777776
Q ss_pred hccc
Q 044791 564 GLIS 567 (623)
Q Consensus 564 ~ll~ 567 (623)
.+..
T Consensus 382 ~~~~ 385 (398)
T PRK10747 382 AMRR 385 (398)
T ss_pred HHHH
Confidence 5543
No 33
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.22 E-value=5.2e-09 Score=102.54 Aligned_cols=196 Identities=19% Similarity=0.090 Sum_probs=149.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGY 353 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~ 353 (623)
...+..+...+...|++++|.+.++++++.. +.+...+..+...|...|++++|++.|++..+. +...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 4567778888888889999999888887753 335677888888888889999999988877643 345777888888
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHH
Q 044791 354 ADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLF 431 (623)
Q Consensus 354 ~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e 431 (623)
...|++++|+..|++..+....+ ....+..+..++...|++++|...+++.... .| +...+..+...+...|+++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI---DPQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCChHHHHHHHHHHHHcCCHH
Confidence 88899999999998888643222 3456667777888889999999999888743 23 3556777888888899999
Q ss_pred HHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 432 EAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 432 ~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
+|.+++++.....| +...+..+...+...|+.+.|....+.+...
T Consensus 187 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 187 DARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999888444333 4566667777888888988888777776554
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.21 E-value=6.6e-09 Score=112.47 Aligned_cols=216 Identities=13% Similarity=0.019 Sum_probs=147.2
Q ss_pred HHcCCHHHHHHHHHc--CCCCCHHHHH--HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044791 257 CQEGKVKEAIELMDK--GVKADASCFY--TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDAR 332 (623)
Q Consensus 257 ~~~g~~~~A~~l~~~--~~~pd~~ty~--~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~ 332 (623)
.+.|+++.|.+.|++ ...|+...+. .....+...|+++.|.+.++++.+.. +-+...+..+...|.+.|++++|.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence 455555555555543 2233332222 22334455555555555555555543 223455555555555555555555
Q ss_pred HHHHHhhc---------------------------------------------CChHHHHHHHHHHHHcCChHHHHHHHH
Q 044791 333 RVFDHMAD---------------------------------------------RSMDSWHLMINGYADNGLGDEGLQLFE 367 (623)
Q Consensus 333 ~lf~~m~~---------------------------------------------~~~~tyn~Li~~~~~~g~~eeA~~l~~ 367 (623)
+++..+.+ .+......+..++...|+.++|.++++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55554432 234466677888999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 044791 368 QMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 368 eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
+..+. .+|... .++.+....++.+++++..+...++ ..-|...+.++...+.+.|++++|.+.|++++...|+.
T Consensus 288 ~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 288 DGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 99874 444422 2344445669999999999999854 22355667888999999999999999999988889999
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 448 EFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 448 ~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
.+|..|...+...|+.++|.++++.-..+...
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence 99999999999999999999999987766543
No 35
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.18 E-value=3.9e-09 Score=103.39 Aligned_cols=199 Identities=12% Similarity=0.055 Sum_probs=158.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044791 310 GDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFS 386 (623)
Q Consensus 310 pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~ 386 (623)
.....+..+...|.+.|++++|++.|+++.+. +...+..+...+...|++++|.+.|++..+... .+...+..+..
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~ 107 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGT 107 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHH
Confidence 34678888999999999999999999988653 455888899999999999999999999998643 35567888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChhH
Q 044791 387 ACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-AEFWEALRNYARIHGDIDL 465 (623)
Q Consensus 387 a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-~~ty~~Li~a~~~~g~~~~ 465 (623)
.+...|++++|.+.|+++............+..+..++...|++++|...|++++...|+ ...+..+...+...|+.++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999854222223456777888999999999999999996665554 5678888899999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHH
Q 044791 466 EDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKE 529 (623)
Q Consensus 466 A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~ 529 (623)
|...++.+.++.+. +...+..+...+...|+. ++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~--------~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQ------------TAESLWLGIRIARALGDV--------AAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHhhH--------HHHHHHHHHHHh
Confidence 99999998887322 234455566666667766 578877766643
No 36
>PF13041 PPR_2: PPR repeat family
Probab=99.18 E-value=5e-11 Score=88.95 Aligned_cols=50 Identities=22% Similarity=0.181 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044791 275 ADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324 (623)
Q Consensus 275 pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k 324 (623)
||.++||+||++|++.|++++|+++|++|++.|+.||..||++||++|||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999985
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.17 E-value=3.2e-09 Score=115.36 Aligned_cols=285 Identities=14% Similarity=0.017 Sum_probs=183.4
Q ss_pred HcCCHHHHHHHHHc--CCCCCHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044791 258 QEGKVKEAIELMDK--GVKADAS-CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRV 334 (623)
Q Consensus 258 ~~g~~~~A~~l~~~--~~~pd~~-ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~l 334 (623)
..|+++.|++.+.+ ...|+.. .+-....+....|+.+.|.+.+.++.+..-.+...+.-.....+...|++++|++.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 57888888888865 3345543 34445667778899999999998887643222223444457788889999999999
Q ss_pred HHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHhhc
Q 044791 335 FDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSAC---GSADAIEEAFIHFESMKSEF 408 (623)
Q Consensus 335 f~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~---~~~g~~e~A~~l~~~m~~~~ 408 (623)
++++.+. +...+..+...+...|++++|.+++..+.+.++.........-+.++ ...+..+++.+.+..+....
T Consensus 176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~ 255 (409)
T TIGR00540 176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ 255 (409)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence 9988763 44578888888999999999999999999887543322211111111 22233333334444444321
Q ss_pred --CCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCC
Q 044791 409 --GISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEF---WEALRNYARIHGDIDLEDHAEELMVDLDPSKADP 483 (623)
Q Consensus 409 --g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~t---y~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~ 483 (623)
....+...+..+...+...|+.++|++++++.++..||... ...........++.+.+.+.++...+..+++
T Consensus 256 p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~--- 332 (409)
T TIGR00540 256 PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK--- 332 (409)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC---
Confidence 11136677788888899999999999999987776676542 1222223334567777777777777665543
Q ss_pred CCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHH
Q 044791 484 KKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAY 563 (623)
Q Consensus 484 ~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~ 563 (623)
|+.....++=..|.+.|++ ++|.++|+.-......||...+.++. .++.+.|+.++|.
T Consensus 333 -------~~~~ll~sLg~l~~~~~~~--------~~A~~~le~a~a~~~~p~~~~~~~La-------~ll~~~g~~~~A~ 390 (409)
T TIGR00540 333 -------PKCCINRALGQLLMKHGEF--------IEAADAFKNVAACKEQLDANDLAMAA-------DAFDQAGDKAEAA 390 (409)
T ss_pred -------hhHHHHHHHHHHHHHcccH--------HHHHHHHHHhHHhhcCCCHHHHHHHH-------HHHHHcCCHHHHH
Confidence 2212333555556777877 68999888655555668777655544 3667777777776
Q ss_pred hccc
Q 044791 564 GLIS 567 (623)
Q Consensus 564 ~ll~ 567 (623)
.+..
T Consensus 391 ~~~~ 394 (409)
T TIGR00540 391 AMRQ 394 (409)
T ss_pred HHHH
Confidence 5543
No 38
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.14 E-value=6e-09 Score=113.71 Aligned_cols=233 Identities=13% Similarity=0.100 Sum_probs=179.6
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHc---------C-CCCCHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHc-----C-
Q 044791 245 VLPPSVADLARLCQEGKVKEAIELMDK---------G-VKADASC-FYTLFELCGNPKWYENAKKVHDYFLQS-----T- 307 (623)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~A~~l~~~---------~-~~pd~~t-y~~Ll~~~~~~g~~~~A~~l~~~m~~~-----g- 307 (623)
...++..|...|...|+++.|+.+++. | ..|...+ .+.+...|...+++++|..+|++++.. |
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 445666788899999999999999853 3 2344443 445778899999999999999998764 2
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhc----------CChH-HHHHHHHHHHHcCChHHHHHHHHHHHHc---
Q 044791 308 IRGD-LVLNNKVIEMYGKCGSMTDARRVFDHMAD----------RSMD-SWHLMINGYADNGLGDEGLQLFEQMRKL--- 372 (623)
Q Consensus 308 ~~pd-~~~y~~Li~~y~k~g~~~~A~~lf~~m~~----------~~~~-tyn~Li~~~~~~g~~eeA~~l~~eM~~~--- 372 (623)
..|. ..+++.|..+|++.|++++|...+++..+ +.+. .++.++..|+..+++++|..++.+..+.
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1222 47788888999999999999988886643 1222 5788888899999999999999987642
Q ss_pred CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc----C-CCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 373 GLQPN----EQTFLAVFSACGSADAIEEAFIHFESMKSEF----G-ISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 373 g~~Pd----~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~----g-~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
-+.++ .-+|+.|...|...|++++|+++|+..+... | ... ....++.|...|.+.++.++|.++|+++..
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 12333 3589999999999999999999999888643 1 122 245677888899999999999999998322
Q ss_pred -------CCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 443 -------FEPTA-EFWEALRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 443 -------~~Pd~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
..|++ .+|..|..+|...|+++.|+++.+.+....
T Consensus 438 i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 438 IMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 33444 689999999999999999999888876543
No 39
>PRK12370 invasion protein regulator; Provisional
Probab=99.13 E-value=7.3e-09 Score=116.93 Aligned_cols=213 Identities=13% Similarity=-0.018 Sum_probs=157.8
Q ss_pred CCHHHHHHHHHcCC--CCCH-HHHHHHHHHHh---------CCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 044791 260 GKVKEAIELMDKGV--KADA-SCFYTLFELCG---------NPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS 327 (623)
Q Consensus 260 g~~~~A~~l~~~~~--~pd~-~ty~~Ll~~~~---------~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~ 327 (623)
+.+++|+++|++.+ .|+. ..|..+..++. ..+++++|...+++.++.. +-+...+..+..++...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 44679999998744 4543 34555554433 3355899999999999864 2367888899999999999
Q ss_pred HHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 044791 328 MTDARRVFDHMADRS---MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE-QTFLAVFSACGSADAIEEAFIHFES 403 (623)
Q Consensus 328 ~~~A~~lf~~m~~~~---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~-~ty~~li~a~~~~g~~e~A~~l~~~ 403 (623)
+++|+..|++..+.+ ...|..+...|...|++++|+..|++..+.. |+. ..+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999987643 4478889999999999999999999999864 432 2333445556778999999999999
Q ss_pred HHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 404 MKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-EFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 404 m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
+.+. ..| +...+..+..+|...|+.++|.+.+++.....|+. ...+.|...|+..| +.|...++.+.+....
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~ 505 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR 505 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH
Confidence 8753 234 34456778888899999999999999944455554 44555666777777 4677767776665443
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=3.1e-08 Score=103.32 Aligned_cols=352 Identities=12% Similarity=0.095 Sum_probs=222.4
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCC------------chHHHHHHHHHHHcCCHHHHHHHHH--
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQV------------LPPSVADLARLCQEGKVKEAIELMD-- 270 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~-- 270 (623)
..|....|++.|-.... ..|-.++.-..+...+...+.. .-.-..+..++-.....++++.=.+
T Consensus 176 ~~~~~s~A~~sfv~~v~--~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l 253 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVN--RYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERL 253 (559)
T ss_pred hhchHHHHHHHHHHHHh--cCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777788888876622 3344333322222222211110 0000122334444445555554332
Q ss_pred --cCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHhhcCChHH
Q 044791 271 --KGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTI--RGDLVLNNKVIEMYGKCGSMT-DARRVFDHMADRSMDS 345 (623)
Q Consensus 271 --~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~--~pd~~~y~~Li~~y~k~g~~~-~A~~lf~~m~~~~~~t 345 (623)
.|+.-+...-+-...+.-...++|.|+.+|+++++... --|..+|+.++-.--.+.++. -|..++ .+-+--..|
T Consensus 254 ~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~-~idKyR~ET 332 (559)
T KOG1155|consen 254 SSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVS-NIDKYRPET 332 (559)
T ss_pred HhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHH-HhccCCccc
Confidence 24444444444444455667788888888888887621 126777877765444333322 233332 222334457
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVL 424 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~ 424 (623)
.-++.+-|.-.++.|+|...|++.++.+.. ....|+.|..-|.+..+...|++-++..+ .+.| |-..|-.|..+|
T Consensus 333 CCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAv---di~p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 333 CCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAV---DINPRDYRAWYGLGQAY 408 (559)
T ss_pred eeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHH---hcCchhHHHHhhhhHHH
Confidence 777888889999999999999999986422 45778888899999999999999999988 5555 788999999999
Q ss_pred HhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhc
Q 044791 425 GKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGK 503 (623)
Q Consensus 425 ~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~ 503 (623)
.-.+...-|+-+|+++..++| |...|.+|..+|.+.+++++|++.+......... +...+..+-..+
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt------------e~~~l~~LakLy 476 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT------------EGSALVRLAKLY 476 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc------------chHHHHHHHHHH
Confidence 999999999999999888888 6789999999999999999999999988876543 234667777777
Q ss_pred CccccccCCcccchHHHHHHHHHHH----HCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCCCCChhHHHhh
Q 044791 504 SRLVEFRNPTLYRDDEKLKALNQMK----ESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKN 579 (623)
Q Consensus 504 ~~~~~~~~~~~~~~~eal~~~~~M~----~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~~~~~~i~~~ 579 (623)
-+.++. ++|..+|++-. ..|..-+.. +.++.--..-+.+.+..++|... ..+.
T Consensus 477 e~l~d~--------~eAa~~yek~v~~~~~eg~~~~~t-----~ka~~fLA~~f~k~~~~~~As~Y----------a~~~ 533 (559)
T KOG1155|consen 477 EELKDL--------NEAAQYYEKYVEVSELEGEIDDET-----IKARLFLAEYFKKMKDFDEASYY----------ATLV 533 (559)
T ss_pred HHHHhH--------HHHHHHHHHHHHHHHhhcccchHH-----HHHHHHHHHHHHhhcchHHHHHH----------HHHH
Confidence 777765 68888774433 334332211 11111111223444555555432 1222
Q ss_pred HhhhcchhHHHHHHHHHhC
Q 044791 580 LRVCGDCHNAIKIMSRIVG 598 (623)
Q Consensus 580 l~~~g~~~~a~~l~~~~~~ 598 (623)
+...-.|++|..++.++..
T Consensus 534 ~~~~~e~eeak~LlReir~ 552 (559)
T KOG1155|consen 534 LKGETECEEAKALLREIRK 552 (559)
T ss_pred hcCCchHHHHHHHHHHHHH
Confidence 2223447788888877654
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.12 E-value=2.4e-08 Score=108.61 Aligned_cols=221 Identities=10% Similarity=-0.008 Sum_probs=149.8
Q ss_pred HHHHHHcCCHHHHHHHHHc--CCCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HH--
Q 044791 253 LARLCQEGKVKEAIELMDK--GVKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMY---GK-- 324 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~--~~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y---~k-- 324 (623)
...+...|+++.|++.+++ ...| +...+..+..++...|++++|.+++..+.+.++..........+.++ ..
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~ 239 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEA 239 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777777754 2334 44566777777777788888888877777776442222111111111 11
Q ss_pred --cCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--H-HHHHHHHHhcCCHHH
Q 044791 325 --CGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQT--F-LAVFSACGSADAIEE 396 (623)
Q Consensus 325 --~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~t--y-~~li~a~~~~g~~e~ 396 (623)
....+...++++...+ .+...+..+...+...|++++|++++++..+. .||... + ..........++.+.
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHH
Confidence 1222333334443332 36678888999999999999999999999986 344432 1 122222344578889
Q ss_pred HHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHH--hhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 044791 397 AFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIE--QKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMV 474 (623)
Q Consensus 397 A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~--~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~ 474 (623)
+++.++...+...-.|+.....+|...+.+.|++++|.+.|+ .++...|+...+..+...+.+.|+.++|.++++...
T Consensus 318 ~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 318 LEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999998888543333322456688889999999999999999 456678999999999999999999999999988754
Q ss_pred h
Q 044791 475 D 475 (623)
Q Consensus 475 ~ 475 (623)
.
T Consensus 398 ~ 398 (409)
T TIGR00540 398 G 398 (409)
T ss_pred H
Confidence 3
No 42
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.11 E-value=7.3e-08 Score=112.01 Aligned_cols=314 Identities=12% Similarity=0.002 Sum_probs=213.9
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCCHHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKADASCFYT 282 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd~~ty~~ 282 (623)
..|++++|+++|+++.+ ..|+. ...+..++..|...++.++|++.+++ ...|+...+-.
T Consensus 114 ~~gdyd~Aiely~kaL~--~dP~n-----------------~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~ 174 (822)
T PRK14574 114 NEKRWDQALALWQSSLK--KDPTN-----------------PDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMT 174 (822)
T ss_pred HcCCHHHHHHHHHHHHh--hCCCC-----------------HHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHH
Confidence 56888888888887733 22221 12223566777888888888888875 33455555544
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----------------------
Q 044791 283 LFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---------------------- 340 (623)
Q Consensus 283 Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---------------------- 340 (623)
++..+...++..+|++.++++++.. +-+...+..++.++.+.|-...|.++..+-..
T Consensus 175 layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a 253 (822)
T PRK14574 175 LSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMA 253 (822)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhc
Confidence 4444444556656888888888863 23566667777777777766666555443220
Q ss_pred -----------------------------CCh-------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044791 341 -----------------------------RSM-------DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAV 384 (623)
Q Consensus 341 -----------------------------~~~-------~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~l 384 (623)
.+. ...--.+.++...|++.+|++.|+.|...|...-..+-..+
T Consensus 254 ~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ 333 (822)
T PRK14574 254 VLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWA 333 (822)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHH
Confidence 000 02223566788899999999999999999977667788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcC----CCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC---------------
Q 044791 385 FSACGSADAIEEAFIHFESMKSEFG----ISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP--------------- 445 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~~~m~~~~g----~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P--------------- 445 (623)
.++|...+..++|+.+|..+....+ ..++......|.-+|...+++++|..+++++....|
T Consensus 334 adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~ 413 (822)
T PRK14574 334 ASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPND 413 (822)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCc
Confidence 9999999999999999999976432 122344457889999999999999999999332122
Q ss_pred CH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHH
Q 044791 446 TA-EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKAL 524 (623)
Q Consensus 446 d~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~ 524 (623)
|- ..+..++..+...|++.+|++.++.+....|.+.. ....+-+.+...|.. ++|++++
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~------------l~~~~A~v~~~Rg~p--------~~A~~~~ 473 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQN------------LRIALASIYLARDLP--------RKAEQEL 473 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------HHHHHHHHHHhcCCH--------HHHHHHH
Confidence 22 23445666788999999999999999887776543 555666667777776 5999998
Q ss_pred HHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcc
Q 044791 525 NQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLI 566 (623)
Q Consensus 525 ~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll 566 (623)
+..... .|+....... .+......+.+.+|..++
T Consensus 474 k~a~~l--~P~~~~~~~~------~~~~al~l~e~~~A~~~~ 507 (822)
T PRK14574 474 KAVESL--APRSLILERA------QAETAMALQEWHQMELLT 507 (822)
T ss_pred HHHhhh--CCccHHHHHH------HHHHHHhhhhHHHHHHHH
Confidence 554433 6665432221 112445557777776554
No 43
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.09 E-value=4.3e-08 Score=98.16 Aligned_cols=285 Identities=12% Similarity=0.081 Sum_probs=202.6
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc-CCCCCH------
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK-GVKADA------ 277 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-~~~pd~------ 277 (623)
-+.+-++|+++|-+|.+ ..|. +...-.+|.+-|.+.|.+|.|+++-.. .-.||.
T Consensus 47 Ls~Q~dKAvdlF~e~l~--~d~~-----------------t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~ 107 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQ--EDPE-----------------TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRL 107 (389)
T ss_pred hhcCcchHHHHHHHHHh--cCch-----------------hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHH
Confidence 46678999999999944 2222 223334888999999999999999854 223442
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHH--------H
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHL--------M 349 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~--------L 349 (623)
.+.-.|..-|...|=+|.|+.+|..+.+.|.. -....--|+..|-...+|++|+++-+++.+.+...|+. |
T Consensus 108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCEL 186 (389)
T COG2956 108 LALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Confidence 34556777888899999999999999886532 34566779999999999999999999887765554444 4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCC
Q 044791 350 INGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGH 429 (623)
Q Consensus 350 i~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~ 429 (623)
...+.-..+++.|..++.+..+..-+ .+..-..+.+.....|+++.|.+.++.+.+. +..--..+...|..+|...|+
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~ 264 (389)
T COG2956 187 AQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGK 264 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCC
Confidence 44444567899999999999876422 3344446677788999999999999999865 544456677889999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHH-HHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCcccc
Q 044791 430 LFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLED-HAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVE 508 (623)
Q Consensus 430 ~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~-~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~ 508 (623)
.++.+.++.++|+..++...-..|........-.+.|. .+.+.+.. +|+...|.-+|+.-..-.+
T Consensus 265 ~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--------------~Pt~~gf~rl~~~~l~dae 330 (389)
T COG2956 265 PAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRR--------------KPTMRGFHRLMDYHLADAE 330 (389)
T ss_pred HHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--------------CCcHHHHHHHHHhhhcccc
Confidence 99999999998887777666666655444443444333 33333333 3888889888887433321
Q ss_pred ccCCcccchHHHHHHHHHHHHC
Q 044791 509 FRNPTLYRDDEKLKALNQMKES 530 (623)
Q Consensus 509 ~~~~~~~~~~eal~~~~~M~~~ 530 (623)
-+ .-.+.+..+++|...
T Consensus 331 eg-----~~k~sL~~lr~mvge 347 (389)
T COG2956 331 EG-----RAKESLDLLRDMVGE 347 (389)
T ss_pred cc-----chhhhHHHHHHHHHH
Confidence 10 013556666777543
No 44
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.05 E-value=1.2e-07 Score=97.67 Aligned_cols=247 Identities=15% Similarity=0.073 Sum_probs=185.3
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHH--HHHHHHcCCHHHHHHHHHc--CC--CCCHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVAD--LARLCQEGKVKEAIELMDK--GV--KADAS 278 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~g~~~~A~~l~~~--~~--~pd~~ 278 (623)
..|+|.+|+++..+..+.+..| ..+.+ ..+--..|+.+.|-.++.+ .. .++..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p---------------------~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~ 154 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP---------------------VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLA 154 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch---------------------HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHH
Confidence 7899999999999774432222 22233 3344567888888888764 22 33445
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----------------
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR----------------- 341 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~----------------- 341 (623)
.+-+........|++..|..-++++.+.+.. ...+......+|.+.|++.++..++..|.+.
T Consensus 155 v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~ 233 (400)
T COG3071 155 VELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWE 233 (400)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHH
Confidence 5667777788888888888888888876533 5677888888888888888888888887653
Q ss_pred ----------------------------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 044791 342 ----------------------------SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADA 393 (623)
Q Consensus 342 ----------------------------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~ 393 (623)
++..-.+++.-+.+.|+.++|.++.++..+++..+.. ..+-.+.+-++
T Consensus 234 glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d 309 (400)
T COG3071 234 GLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGD 309 (400)
T ss_pred HHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCC
Confidence 2223445666677888888888888888887777662 22335566777
Q ss_pred HHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 044791 394 IEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELM 473 (623)
Q Consensus 394 ~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~ 473 (623)
.+.-++..+.-.+.++..| ..+.+|...|.+.+.|.+|.+.|+.++...|+..+|+.+..+|...|+.++|.++.+..
T Consensus 310 ~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 310 PEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred chHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 7777777777776555555 67888999999999999999999998999999999999999999999999999998887
Q ss_pred HhcCCC
Q 044791 474 VDLDPS 479 (623)
Q Consensus 474 ~~m~~~ 479 (623)
..+...
T Consensus 388 L~~~~~ 393 (400)
T COG3071 388 LLLTRQ 393 (400)
T ss_pred HHHhcC
Confidence 655433
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.02 E-value=3.7e-08 Score=111.19 Aligned_cols=207 Identities=10% Similarity=-0.118 Sum_probs=148.3
Q ss_pred cCCHHHHHHHHHcCC--CC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044791 259 EGKVKEAIELMDKGV--KA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVF 335 (623)
Q Consensus 259 ~g~~~~A~~l~~~~~--~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf 335 (623)
.+++++|+..+++.+ .| +..++..+..++...|++++|+..|+++++.+ +.+...+..+..+|...|++++|+..|
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~ 395 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTI 395 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 355899999998744 44 45678888888999999999999999999964 335778889999999999999999999
Q ss_pred HHhhcCChH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 044791 336 DHMADRSMD---SWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGIS 411 (623)
Q Consensus 336 ~~m~~~~~~---tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~ 411 (623)
++..+.+.. .+..++..+...|++++|+..++++.+.. .| +...+..+..++...|+.++|...+.++... .
T Consensus 396 ~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~ 471 (553)
T PRK12370 396 NECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---E 471 (553)
T ss_pred HHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---c
Confidence 998764333 44455556777899999999999988653 24 4455777888888999999999999887642 3
Q ss_pred CC-ccchhhHHHHHHhcCCHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 412 PG-TEHYLGLVGVLGKCGHLFEAQQFIEQKL---PFEPTAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 412 p~-~~ty~~Li~~~~k~g~~e~A~~lf~~~m---~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
|+ ....+.|...|+..| ++|...++... ...+....+..++ |.-.|+.+.+. .++.+.+
T Consensus 472 ~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~~~~~-~~~~~~~ 534 (553)
T PRK12370 472 ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGEAIAEK-MWNKFKN 534 (553)
T ss_pred chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhhhHHHH-HHHHhhc
Confidence 33 334455556677777 47777776622 2334333444444 44456665443 3354444
No 46
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.98 E-value=2.6e-08 Score=99.63 Aligned_cols=229 Identities=17% Similarity=0.128 Sum_probs=192.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHcC--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 044791 250 VADLARLCQEGKVKEAIELMDKG--VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS 327 (623)
Q Consensus 250 ~~li~~~~~~g~~~~A~~l~~~~--~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~ 327 (623)
+-|..+|.+.|.+.+|+..|+.. -.|-+.||-.|-++|.+....+.|+.++.+-++. ++-|+....-+...+-..++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHHh
Confidence 47788999999999999999764 3467789999999999999999999999998875 34344444557778888899
Q ss_pred HHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044791 328 MTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESM 404 (623)
Q Consensus 328 ~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m 404 (623)
.++|.++|++..+. ++.+..++..+|.-.++.|-|+..|++++..|+. +...|+.+.-+|.-.+.+|-++-.|++.
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RA 384 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRA 384 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHH
Confidence 99999999988763 5667888888999999999999999999999986 7788999999999999999999999988
Q ss_pred HhhcCCCCC--ccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC
Q 044791 405 KSEFGISPG--TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKA 481 (623)
Q Consensus 405 ~~~~g~~p~--~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~ 481 (623)
... --.|+ ..+|-.|....+..|++.-|.+.|+.++...+ +...+|.|.-.-.+.|+++.|...+.......|.-.
T Consensus 385 lst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~ 463 (478)
T KOG1129|consen 385 LST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMA 463 (478)
T ss_pred Hhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccc
Confidence 854 33343 45677888888999999999999998665444 457899998888999999999999998887766543
No 47
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.97 E-value=4.1e-08 Score=107.27 Aligned_cols=236 Identities=13% Similarity=0.101 Sum_probs=174.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CC-CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHhhc-------C--
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQS-----TI-RGDLVL-NNKVIEMYGKCGSMTDARRVFDHMAD-------R-- 341 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-----g~-~pd~~~-y~~Li~~y~k~g~~~~A~~lf~~m~~-------~-- 341 (623)
.++..|...|...|+++.|+.+++..++. |. .+.+.+ .+.+...|...+++++|..+|+++.. .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 56777999999999999999999988764 21 233333 34477889999999999999998863 1
Q ss_pred --ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC--C
Q 044791 342 --SMDSWHLMINGYADNGLGDEGLQLFEQMRKL-----GL-QPNE-QTFLAVFSACGSADAIEEAFIHFESMKSEFG--I 410 (623)
Q Consensus 342 --~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~-----g~-~Pd~-~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g--~ 410 (623)
-..+++.|..+|.+.|++++|..++++..+. |. .+.+ .-++.++..|+..+++++|..++....+-+. .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1238999999999999999999988887632 22 2333 2456677789999999999999887665332 1
Q ss_pred CC----CccchhhHHHHHHhcCCHHHHHHHHHhhCC--------CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 411 SP----GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP--------FEPT-AEFWEALRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 411 ~p----~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~--------~~Pd-~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
.+ -..+|+.|...|.+.|++++|+++|++++. .... ...++.|..+|.+.+..++|.++++....+.
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 12 246899999999999999999999999442 1222 3567788889999999888888777765544
Q ss_pred CCCCCCCCCCCCCC-chhhHHHHhhhcCccccccCCcccchHHHHHHHHHH
Q 044791 478 PSKADPKKIPTPPP-KKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQM 527 (623)
Q Consensus 478 ~~~~~~~~~~~~~p-~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M 527 (623)
.-+.++ .| ...+|..|...|.+.|++ |+|+++....
T Consensus 440 -~~~g~~-----~~~~~~~~~nL~~~Y~~~g~~--------e~a~~~~~~~ 476 (508)
T KOG1840|consen 440 -KLCGPD-----HPDVTYTYLNLAALYRAQGNY--------EAAEELEEKV 476 (508)
T ss_pred -HHhCCC-----CCchHHHHHHHHHHHHHcccH--------HHHHHHHHHH
Confidence 222211 12 256788999999999998 6888887444
No 48
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.95 E-value=2.4e-07 Score=103.74 Aligned_cols=282 Identities=16% Similarity=0.141 Sum_probs=185.3
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHH--cCCCC-CHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMD--KGVKA-DASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~--~~~~p-d~~ty~ 281 (623)
-.|++++|.+++.++.+ ..|.. ...|.+|...|-..|+.++++..+- ..+.| |...|.
T Consensus 151 arg~~eeA~~i~~EvIk--qdp~~-----------------~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~ 211 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIK--QDPRN-----------------PIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWK 211 (895)
T ss_pred HhCCHHHHHHHHHHHHH--hCccc-----------------hhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHH
Confidence 45999999999999855 33332 2345577778888888888887652 33433 456677
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--------------------
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR-------------------- 341 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-------------------- 341 (623)
.+.....+.|+++.|.-+|.+.++.. +++...+---+..|-+.|+...|++-|.+|...
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 77777777777888877777777753 234444444556666677777666666665432
Q ss_pred ------------------------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---------------------
Q 044791 342 ------------------------SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP--------------------- 376 (623)
Q Consensus 342 ------------------------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P--------------------- 376 (623)
+...+++++..|.+...++.|.....++.....++
T Consensus 291 ~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence 11256667777777777777777666665521112
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC--CCccchhhHHHHHHhcCCHHHHHHHHHhhCC--CCCC
Q 044791 377 ------NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGIS--PGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP--FEPT 446 (623)
Q Consensus 377 ------d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~--p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~--~~Pd 446 (623)
+...+ -++-++.+....+....+....... .+. -++..|.-+.++|...|++.+|+.+|..+.. ..-+
T Consensus 371 ~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 371 GKELSYDLRVI-RLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred CCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 11111 1222333333333333333333332 433 3567788899999999999999999999333 2235
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHH
Q 044791 447 AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQ 526 (623)
Q Consensus 447 ~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~ 526 (623)
...|--+..+|...|..+.|.+.+++.....|.+.. ..++..+ .+-+.|.+ |+|++.+..
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D---------~Ri~Las---l~~~~g~~--------EkalEtL~~ 508 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLD---------ARITLAS---LYQQLGNH--------EKALETLEQ 508 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchh---------hhhhHHH---HHHhcCCH--------HHHHHHHhc
Confidence 678999999999999999999999999999988765 1334444 44556666 689998877
Q ss_pred HH
Q 044791 527 MK 528 (623)
Q Consensus 527 M~ 528 (623)
|.
T Consensus 509 ~~ 510 (895)
T KOG2076|consen 509 II 510 (895)
T ss_pred cc
Confidence 64
No 49
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.92 E-value=1e-07 Score=95.62 Aligned_cols=183 Identities=15% Similarity=0.148 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-CChH------HHHHHHHHHHHcCChHHHHH
Q 044791 292 WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD-RSMD------SWHLMINGYADNGLGDEGLQ 364 (623)
Q Consensus 292 ~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~-~~~~------tyn~Li~~~~~~g~~eeA~~ 364 (623)
+.++|.++|-+|.+.. +-+..+.-+|.+.|-+.|.+|.|+++...+.+ +|.. ..--|..-|...|-+|.|+.
T Consensus 50 Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 50 QPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred CcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3445555555554421 11233334455555555555555555544332 2221 22333344444555555555
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----ccchhhHHHHHHhcCCHHHHHHHHHhh
Q 044791 365 LFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG----TEHYLGLVGVLGKCGHLFEAQQFIEQK 440 (623)
Q Consensus 365 l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~----~~ty~~Li~~~~k~g~~e~A~~lf~~~ 440 (623)
+|..+.+.|. .-....-.|+..|-...++++|+++-+++.+- +-.+. ..-|.-|...+.-..++++|..++.++
T Consensus 129 ~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 129 IFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 5555444321 12223334444455555555555554444422 11110 011222222222334455555555554
Q ss_pred CCCCCCHHHHHH-HHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 441 LPFEPTAEFWEA-LRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 441 m~~~Pd~~ty~~-Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
+...|..+--++ |.+.+...|++..|.++++.+.+-+
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn 244 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQN 244 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhC
Confidence 443333322222 2234444555555555555554443
No 50
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.89 E-value=1.3e-06 Score=96.62 Aligned_cols=289 Identities=14% Similarity=0.106 Sum_probs=195.1
Q ss_pred HHHHHHcCCHHHHHHHHHc--CCCCCHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----
Q 044791 253 LARLCQEGKVKEAIELMDK--GVKADAS-CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC---- 325 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~--~~~pd~~-ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~---- 325 (623)
...+...|++++|++.+++ ...+|.. .+......+.+.|+.++|..+|..+++.+. .|..-|..|..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcccc
Confidence 4557889999999999964 4556654 566788899999999999999999999763 2556666666666333
Q ss_pred -CCHHHHHHHHHHhhcCChH--HHHHHHHHHHHcCChH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044791 326 -GSMTDARRVFDHMADRSMD--SWHLMINGYADNGLGD-EGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHF 401 (623)
Q Consensus 326 -g~~~~A~~lf~~m~~~~~~--tyn~Li~~~~~~g~~e-eA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~ 401 (623)
...+...++|+++.+.-.. +..-+.-.+....++. .+...+..+..+||. .+|+.|-..|....+.+-...++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence 2578888899988654322 2222222222222333 455567778888875 36666766677666666666777
Q ss_pred HHHHhhcC-------------CCCCc--cchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChhH
Q 044791 402 ESMKSEFG-------------ISPGT--EHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-EFWEALRNYARIHGDIDL 465 (623)
Q Consensus 402 ~~m~~~~g-------------~~p~~--~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ty~~Li~a~~~~g~~~~ 465 (623)
..+..... -.|.. .++..|...|-..|++++|++++++++...|+. ..|.+-.+.|...|++++
T Consensus 167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHH
Confidence 66654311 11232 244556677889999999999999989989975 678888889999999999
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCH
Q 044791 466 EDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQ 545 (623)
Q Consensus 466 A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~ 545 (623)
|.++++..++|+... ...=+.....+.|.|++ ++|.+.+......+. +.......+..
T Consensus 247 Aa~~~~~Ar~LD~~D------------RyiNsK~aKy~LRa~~~--------e~A~~~~~~Ftr~~~--~~~~~L~~mQc 304 (517)
T PF12569_consen 247 AAEAMDEARELDLAD------------RYINSKCAKYLLRAGRI--------EEAEKTASLFTREDV--DPLSNLNDMQC 304 (517)
T ss_pred HHHHHHHHHhCChhh------------HHHHHHHHHHHHHCCCH--------HHHHHHHHhhcCCCC--CcccCHHHHHH
Confidence 999999999998754 33444555556667766 799888876666555 22222222211
Q ss_pred ---HHHHHHHHHHHhHHHHHHhccc
Q 044791 546 ---EAKEQALLYHSERLAIAYGLIS 567 (623)
Q Consensus 546 ---~~k~~~~~~~~g~l~~A~~ll~ 567 (623)
....+..+.+.|++..|+..+.
T Consensus 305 ~Wf~~e~a~a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 305 MWFETECAEAYLRQGDYGLALKRFH 329 (517)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 1233345667777777776553
No 51
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=3.5e-08 Score=102.14 Aligned_cols=88 Identities=14% Similarity=0.107 Sum_probs=60.1
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCCHHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKADASCFYT 282 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd~~ty~~ 282 (623)
+...|.+|++.|+.... .+|..-..+ .+...+++...|.+.|.+++|+.-|+. ...|+..+--.
T Consensus 249 kkr~fskaikfyrmald--qvpsink~~------------rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~n 314 (840)
T KOG2003|consen 249 KKREFSKAIKFYRMALD--QVPSINKDM------------RIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALN 314 (840)
T ss_pred ehhhHHHHHHHHHHHHh--hccccchhh------------HHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhh
Confidence 57889999999884433 444422211 234555666778899999999999975 44577665444
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHc
Q 044791 283 LFELCGNPKWYENAKKVHDYFLQS 306 (623)
Q Consensus 283 Ll~~~~~~g~~~~A~~l~~~m~~~ 306 (623)
|+-++.-.|+-++..+.|.+|+..
T Consensus 315 l~i~~f~i~d~ekmkeaf~kli~i 338 (840)
T KOG2003|consen 315 LIICAFAIGDAEKMKEAFQKLIDI 338 (840)
T ss_pred hhhhheecCcHHHHHHHHHHHhcC
Confidence 444445568888888889888865
No 52
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.88 E-value=4.9e-08 Score=108.50 Aligned_cols=239 Identities=13% Similarity=0.081 Sum_probs=158.6
Q ss_pred HcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHH
Q 044791 270 DKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLM 349 (623)
Q Consensus 270 ~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~L 349 (623)
..|+.|+.+||..||..||..|+++.|- +|.-|.-.....+..+++.++.+....++.+.|. ++...+|..|
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~L 89 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNL 89 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHH
Confidence 3589999999999999999999999998 8888877767777889999999999999988776 6777899999
Q ss_pred HHHHHHcCChHH---HHHHHHHHH----HcCCCCCHHHHHHHHHHH--------------HhcCCHHHHHHHHHHHHhhc
Q 044791 350 INGYADNGLGDE---GLQLFEQMR----KLGLQPNEQTFLAVFSAC--------------GSADAIEEAFIHFESMKSEF 408 (623)
Q Consensus 350 i~~~~~~g~~ee---A~~l~~eM~----~~g~~Pd~~ty~~li~a~--------------~~~g~~e~A~~l~~~m~~~~ 408 (623)
..+|...||+.. +.+.++... ..|+.--..-|-..|++| ...|-++.+++++..|
T Consensus 90 l~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~---- 165 (1088)
T KOG4318|consen 90 LKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV---- 165 (1088)
T ss_pred HHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC----
Confidence 999999999655 222222221 223332222222222222 2223333333333222
Q ss_pred CCCCCccchhhH---HHHHHh-cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCC
Q 044791 409 GISPGTEHYLGL---VGVLGK-CGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPK 484 (623)
Q Consensus 409 g~~p~~~ty~~L---i~~~~k-~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~ 484 (623)
|...-++.. +.-... ...+++-..+... ..-.++..+|.+++.+-...|+++.|..++..|++ .|..
T Consensus 166 ---Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cks-l~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke---~gfp-- 236 (1088)
T KOG4318|consen 166 ---PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKS-LVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE---KGFP-- 236 (1088)
T ss_pred ---CcccccchHHHHHHHhccCCchHHHHHHHHHH-hhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH---cCCC--
Confidence 322222221 222222 2345555555555 33369999999999999999999966666555555 5554
Q ss_pred CCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHH
Q 044791 485 KIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQE 546 (623)
Q Consensus 485 ~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~ 546 (623)
.+..-|..+|.+ .+.. .-+..+++.|.+.|+.|+..|+...+..+
T Consensus 237 ------ir~HyFwpLl~g---~~~~--------q~~e~vlrgmqe~gv~p~seT~adyvip~ 281 (1088)
T KOG4318|consen 237 ------IRAHYFWPLLLG---INAA--------QVFEFVLRGMQEKGVQPGSETQADYVIPQ 281 (1088)
T ss_pred ------cccccchhhhhc---Cccc--------hHHHHHHHHHHHhcCCCCcchhHHHHHhh
Confidence 666677788877 3332 24455668999999999999998877543
No 53
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.85 E-value=1.6e-06 Score=97.88 Aligned_cols=286 Identities=13% Similarity=0.146 Sum_probs=170.6
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKADASCFYTLF 284 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll 284 (623)
..|+|-.|+.+|....+ ..|........ .+..+|.+.|+.+.|+..|.+.+..|+...++++
T Consensus 176 nkkdY~~al~yyk~al~--inp~~~aD~rI----------------gig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv 237 (1018)
T KOG2002|consen 176 NKKDYRGALKYYKKALR--INPACKADVRI----------------GIGHCFWKLGMSEKALLAFERALQLDPTCVSALV 237 (1018)
T ss_pred ccccHHHHHHHHHHHHh--cCcccCCCccc----------------hhhhHHHhccchhhHHHHHHHHHhcChhhHHHHH
Confidence 56777777777776533 22222221111 2334566788888888888765544443333222
Q ss_pred HH------HhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCh------HHHHHHHHH
Q 044791 285 EL------CGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSM------DSWHLMING 352 (623)
Q Consensus 285 ~~------~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~------~tyn~Li~~ 352 (623)
.. +-..-.+..|+.++...-... .-+.++.+.|.+.|.-.|++..|..+.+.+..... .+|--+..+
T Consensus 238 ~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs 316 (1018)
T KOG2002|consen 238 ALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRS 316 (1018)
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 21 112234555666665555442 22566777788888888888888888887765431 267778888
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcC--
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQPNEQ--TFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCG-- 428 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~Pd~~--ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g-- 428 (623)
|-..|++++|...|.+.... .+|.. .+.-|...+.+.|+++.+...|+.+.+. ..-+..+...|...|+..+
T Consensus 317 ~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 317 YHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhh
Confidence 88888888888888776654 44443 3444566678888888888888887743 2224555555555565554
Q ss_pred --CHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh-cCCCCCCCCCCCCCCCchhhHHHHhhhcC
Q 044791 429 --HLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVD-LDPSKADPKKIPTPPPKKRTAISILDGKS 504 (623)
Q Consensus 429 --~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~-m~~~~~~~~~~~~~~p~~~t~~~li~~~~ 504 (623)
..++|..++.+..+..| |...|-.+...|- .++...+..++....+ |...+.. +-....|.+-....
T Consensus 393 ~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~--------ip~E~LNNvaslhf 463 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQTPVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQ--------IPPEVLNNVASLHF 463 (1018)
T ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCC--------CCHHHHHhHHHHHH
Confidence 56777777777555444 4456655555444 4454444555555442 2222221 33556666666667
Q ss_pred ccccccCCcccchHHHHHHHHHHHHC
Q 044791 505 RLVEFRNPTLYRDDEKLKALNQMKES 530 (623)
Q Consensus 505 ~~~~~~~~~~~~~~eal~~~~~M~~~ 530 (623)
+.|.+ ++|.+.|+.-+..
T Consensus 464 ~~g~~--------~~A~~~f~~A~~~ 481 (1018)
T KOG2002|consen 464 RLGNI--------EKALEHFKSALGK 481 (1018)
T ss_pred HhcCh--------HHHHHHHHHHhhh
Confidence 77766 5888888555433
No 54
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.84 E-value=5.8e-07 Score=93.26 Aligned_cols=233 Identities=12% Similarity=0.027 Sum_probs=166.8
Q ss_pred CCHHHHHHHHHcCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044791 260 GKVKEAIELMDKGVKADA---SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFD 336 (623)
Q Consensus 260 g~~~~A~~l~~~~~~pd~---~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~ 336 (623)
+++..|-..-+..+..|. .....-.+.....|++++|.+.|++.+...-.-....|| +.-.+-+.|++++|+..|-
T Consensus 470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~ 548 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFL 548 (840)
T ss_pred cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHH
Confidence 455566555444333332 222223334455789999999999997753322223333 4456778899999999997
Q ss_pred Hhh---cCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC
Q 044791 337 HMA---DRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG 413 (623)
Q Consensus 337 ~m~---~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~ 413 (623)
++. ..++...--+.+.|-...+...|++++-..... +.-|......|.+.|-+.|+-..|...+-+--+ =+..+
T Consensus 549 klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~n 625 (840)
T KOG2003|consen 549 KLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCN 625 (840)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcc
Confidence 764 356666777778888889999999998776553 444678888999999999999999988765442 23447
Q ss_pred ccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCc
Q 044791 414 TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNY-ARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPK 492 (623)
Q Consensus 414 ~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a-~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~ 492 (623)
+.+...|..-|....-+++|+.+|+++--+.|+.+-|..||.. +.+.|++..|.+.++.+....|.+
T Consensus 626 ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfped------------ 693 (840)
T KOG2003|consen 626 IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPED------------ 693 (840)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccc------------
Confidence 8888888888999999999999999944478999999999885 567999997777777766655443
Q ss_pred hhhHHHHhhhcCcccc
Q 044791 493 KRTAISILDGKSRLVE 508 (623)
Q Consensus 493 ~~t~~~li~~~~~~~~ 508 (623)
.....-|+..|...|.
T Consensus 694 ldclkflvri~~dlgl 709 (840)
T KOG2003|consen 694 LDCLKFLVRIAGDLGL 709 (840)
T ss_pred hHHHHHHHHHhccccc
Confidence 3344556666777765
No 55
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1.5e-07 Score=98.24 Aligned_cols=210 Identities=15% Similarity=0.147 Sum_probs=133.9
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCH---HHHHHHHH-cCCCCCHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKV---KEAIELMD-KGVKADASCF 280 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~l~~-~~~~pd~~ty 280 (623)
.+.++|+|+.+|+.+.+ ..|=.++.+ .++.+++ |++..+- -.|..++. ...+| .|+
T Consensus 274 ~~rDfD~a~s~Feei~k--nDPYRl~dm--------------dlySN~L--Yv~~~~skLs~LA~~v~~idKyR~--ETC 333 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRK--NDPYRLDDM--------------DLYSNVL--YVKNDKSKLSYLAQNVSNIDKYRP--ETC 333 (559)
T ss_pred hhhhHHHHHHHHHHHHh--cCCCcchhH--------------HHHhHHH--HHHhhhHHHHHHHHHHHHhccCCc--cce
Confidence 57899999999999966 344433332 2222222 2222211 12333332 23333 356
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcC
Q 044791 281 YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNG 357 (623)
Q Consensus 281 ~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g 357 (623)
.++.+-|+-.++-++|...|++.++.+. .....|+.+..-|....+...|++-++...+ +|-..|-.|..+|.-.+
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~ 412 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMK 412 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhc
Confidence 6666667777777777777777777542 2456677777777777777777777776654 34457777777777777
Q ss_pred ChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHH
Q 044791 358 LGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQF 436 (623)
Q Consensus 358 ~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~l 436 (623)
...=|+-.|++..+. +| |...|.+|..+|.+.++.++|++.|.+...- -..+...|..|.+.|-+.++.++|..+
T Consensus 413 Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dte~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 413 MHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDTEGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred chHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHHHhHHHHHHH
Confidence 777777777776663 44 5677777777777777777777777776642 222456677777777777777777777
Q ss_pred HHh
Q 044791 437 IEQ 439 (623)
Q Consensus 437 f~~ 439 (623)
|++
T Consensus 489 yek 491 (559)
T KOG1155|consen 489 YEK 491 (559)
T ss_pred HHH
Confidence 766
No 56
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.81 E-value=1.1e-06 Score=91.20 Aligned_cols=194 Identities=12% Similarity=-0.028 Sum_probs=129.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYA 354 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~ 354 (623)
..|..+..++.+.|+.++|...|++.++.. +.+...|+.+...|...|++++|+..|++..+. +..+|..+..++.
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 457777778888888888888888888853 235788888888888899999999888888653 3457888888888
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHH--
Q 044791 355 DNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFE-- 432 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~-- 432 (623)
..|++++|++.|++..+. .|+..........+...++.++|...|++... ...++... ..++. ...|++.+
T Consensus 144 ~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~-~~~~~--~~lg~~~~~~ 216 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWG-WNIVE--FYLGKISEET 216 (296)
T ss_pred HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccH-HHHHH--HHccCCCHHH
Confidence 889999999988888875 44433222222233456788888888876553 23333222 12222 33444433
Q ss_pred HHHHHHhhCCC----CC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 433 AQQFIEQKLPF----EP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 433 A~~lf~~~m~~----~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
+.+.+.+.... .| ....|..|...+...|+.++|...+++..+..+.
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~ 268 (296)
T PRK11189 217 LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY 268 (296)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence 33333321221 11 2357888888888899999888888888876643
No 57
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.79 E-value=1.2e-07 Score=97.76 Aligned_cols=223 Identities=14% Similarity=0.162 Sum_probs=158.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCH
Q 044791 250 VADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRG-DLVLNNKVIEMYGKCGSM 328 (623)
Q Consensus 250 ~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~y~~Li~~y~k~g~~ 328 (623)
.-+..++...|+.+.++.-...+-.|.......+...+....+-+.++.-+++.+..+... +..+.-....+|...|++
T Consensus 39 ~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~ 118 (290)
T PF04733_consen 39 FYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDY 118 (290)
T ss_dssp HHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHH
T ss_pred HHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCH
Confidence 3567889999999988877766668888777777766665556666666555544433332 333333334566778999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 044791 329 TDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS----ADAIEEAFIHFESM 404 (623)
Q Consensus 329 ~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~----~g~~e~A~~l~~~m 404 (623)
++|+++++.. .+.......+..|.+.+++|.|.+.|+.|.+. ..| .+...|..++.. .+.+.+|..+|+++
T Consensus 119 ~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El 193 (290)
T PF04733_consen 119 EEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEEL 193 (290)
T ss_dssp HHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 9999998765 56778888999999999999999999999875 334 444445554433 34799999999999
Q ss_pred HhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCh-hHHHHHHHHHHhcCCC
Q 044791 405 KSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDI-DLEDHAEELMVDLDPS 479 (623)
Q Consensus 405 ~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~-~~A~~~~~~~~~m~~~ 479 (623)
.. ...++..+.+.+..++...|++++|++++.+++...| +..+...+|.+....|+. +.+.+.+..+....+.
T Consensus 194 ~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 194 SD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred Hh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence 85 4456778888899999999999999999999887666 446777788887888887 6566777777776554
No 58
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.76 E-value=5.5e-06 Score=93.68 Aligned_cols=183 Identities=13% Similarity=0.089 Sum_probs=99.4
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCCHHH--H
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKADASC--F 280 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd~~t--y 280 (623)
..|+|..+..+...+...-....... .+|.-+..+|...|++++|..+|-. +..+|.++ +
T Consensus 282 fK~dy~~v~~la~~ai~~t~~~~~~a----------------es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~ 345 (1018)
T KOG2002|consen 282 FKKDYERVWHLAEHAIKNTENKSIKA----------------ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPL 345 (1018)
T ss_pred hcccHHHHHHHHHHHHHhhhhhHHHH----------------HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccc
Confidence 56777777777776633221111111 1233566777777777777777743 44444433 3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHhhcCCh---HHHHHHHHHH
Q 044791 281 YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG----SMTDARRVFDHMADRSM---DSWHLMINGY 353 (623)
Q Consensus 281 ~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g----~~~~A~~lf~~m~~~~~---~tyn~Li~~~ 353 (623)
--|...+.+.|+++.+...|+.+.+. .+-+..+..+|...|+..+ ..++|..++.+..+... ..|-.+...|
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34666777777777777777777664 2334566666666666554 45666666666554432 2343333333
Q ss_pred HHcCChHHHHHHHHHH----HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 354 ADNGLGDEGLQLFEQM----RKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 354 ~~~g~~eeA~~l~~eM----~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
-. ++...++.+|... ...|-.+-....|.+.......|.+++|...|....
T Consensus 425 e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~ 479 (1018)
T KOG2002|consen 425 EQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL 479 (1018)
T ss_pred Hh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence 22 2333334444332 233333455555666655666666666666665555
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=5.9e-06 Score=87.10 Aligned_cols=318 Identities=14% Similarity=0.096 Sum_probs=193.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHc--CCCCC-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcC
Q 044791 251 ADLARLCQEGKVKEAIELMDK--GVKAD-ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD-LVLNNKVIEMYGKCG 326 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~--~~~pd-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~y~~Li~~y~k~g 326 (623)
+..+-|.+.|++++|++.|.. .+.|| .+-|.....+|...|+|+++.+.-.+.++ +.|+ +..+.--..++-..|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhhc
Confidence 445568899999999999976 55688 67788888889999999998888877776 4455 334444445555555
Q ss_pred CHHHHH----------------------HHHHHh---------hc-C---------------------------------
Q 044791 327 SMTDAR----------------------RVFDHM---------AD-R--------------------------------- 341 (623)
Q Consensus 327 ~~~~A~----------------------~lf~~m---------~~-~--------------------------------- 341 (623)
++++|+ +++++. .+ +
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksD 277 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSD 277 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccch
Confidence 555543 222211 10 0
Q ss_pred --------------------------------------C---------hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 044791 342 --------------------------------------S---------MDSWHLMINGYADNGLGDEGLQLFEQMRKLGL 374 (623)
Q Consensus 342 --------------------------------------~---------~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~ 374 (623)
+ +.+.......+.-.|+.-.|...|++..+...
T Consensus 278 a~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~ 357 (606)
T KOG0547|consen 278 AALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP 357 (606)
T ss_pred hhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc
Confidence 0 00011111113334556666666666665433
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHH
Q 044791 375 QPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEA 452 (623)
Q Consensus 375 ~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~ 452 (623)
.++. .|.-+..+|....+-++.+..|.... .+.| +..+|-.-..++.-.+++++|..=|++++.+.| ++..|--
T Consensus 358 ~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~---~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQ 433 (606)
T KOG0547|consen 358 AFNS-LYIKRAAAYADENQSEKMWKDFNKAE---DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQ 433 (606)
T ss_pred ccch-HHHHHHHHHhhhhccHHHHHHHHHHH---hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHH
Confidence 3222 26666667788888888888887776 5555 566777777778888888888888888777777 4456666
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCc
Q 044791 453 LRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTY 532 (623)
Q Consensus 453 Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi 532 (623)
+--+..+.+.+++++..++...+..|.-. ..|+..-..+...++| +.|++.|+.-++.
T Consensus 434 l~~a~Yr~~k~~~~m~~Fee~kkkFP~~~------------Evy~~fAeiLtDqqqF--------d~A~k~YD~ai~L-- 491 (606)
T KOG0547|consen 434 LCCALYRQHKIAESMKTFEEAKKKFPNCP------------EVYNLFAEILTDQQQF--------DKAVKQYDKAIEL-- 491 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCc------------hHHHHHHHHHhhHHhH--------HHHHHHHHHHHhh--
Confidence 66666677888888888888777666543 3566666777778888 6888888554432
Q ss_pred ccCcce-eeeccCHHHHHHHHHHHHhHHHHHHhcccCC----CCChhHH---HhhHhhhcchhHHHHHHHHH
Q 044791 533 VPDTRY-VLHDIDQEAKEQALLYHSERLAIAYGLISTP----ARTPLRI---IKNLRVCGDCHNAIKIMSRI 596 (623)
Q Consensus 533 ~Pd~~t-~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m----~~~~~~i---~~~l~~~g~~~~a~~l~~~~ 596 (623)
.|+... +....--..|+..++-=.+++..|..++..- ++...+. -.....-|+.++|+++|.+.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred ccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 222111 1000000112222222236777777776542 2211221 12235557788888877764
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.73 E-value=2e-06 Score=89.29 Aligned_cols=226 Identities=11% Similarity=-0.062 Sum_probs=156.2
Q ss_pred CCChHHHHHHHHHhcCCC-CCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCC-CHHHHH
Q 044791 206 NQGYPQARNSYQQVSPGH-QIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKA-DASCFY 281 (623)
Q Consensus 206 ~g~~~~A~~lf~~m~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~p-d~~ty~ 281 (623)
.++.+.++.-+.++.... ..|+ .....+..+...|.+.|++++|+..|++ .+.| +...|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~----------------~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~ 102 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDE----------------ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYN 102 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcH----------------hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 466788888888773211 0110 1123455677788999999999999976 3445 457899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH-HHHHH-HHHHHHcCC
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRG-DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD-SWHLM-INGYADNGL 358 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~-tyn~L-i~~~~~~g~ 358 (623)
.+...+...|++++|++.|++.++. .| +..+|..+..++...|++++|++.|+...+.+.. .+..+ ...+...++
T Consensus 103 ~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~ 180 (296)
T PRK11189 103 YLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLD 180 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence 9999999999999999999999985 34 4788899999999999999999999988764332 12222 223445678
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-----CccchhhHHHHHHhcCCHHHH
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-----GTEHYLGLVGVLGKCGHLFEA 433 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-----~~~ty~~Li~~~~k~g~~e~A 433 (623)
+++|+..|.+.... ..++...+ . .+....|+++++ +.++.+.+.....+ ....|..|...|.+.|+.++|
T Consensus 181 ~~~A~~~l~~~~~~-~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A 255 (296)
T PRK11189 181 PKQAKENLKQRYEK-LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEA 255 (296)
T ss_pred HHHHHHHHHHHHhh-CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 99999999876643 23333222 2 222335665544 35555553222111 235788999999999999999
Q ss_pred HHHHHhhCCCCC-CHHHHHHHH
Q 044791 434 QQFIEQKLPFEP-TAEFWEALR 454 (623)
Q Consensus 434 ~~lf~~~m~~~P-d~~ty~~Li 454 (623)
+..|++++...| |.+-+...+
T Consensus 256 ~~~~~~Al~~~~~~~~e~~~~~ 277 (296)
T PRK11189 256 AALFKLALANNVYNFVEHRYAL 277 (296)
T ss_pred HHHHHHHHHhCCchHHHHHHHH
Confidence 999999777664 655555433
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=1.2e-06 Score=88.04 Aligned_cols=237 Identities=14% Similarity=0.037 Sum_probs=187.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--CChHHH-HHH
Q 044791 273 VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD--RSMDSW-HLM 349 (623)
Q Consensus 273 ~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~--~~~~ty-n~L 349 (623)
...|-..-+-+.++|.+.|.+.+|++.++..++. .|-+.||-.|-.+|.+....+.|+.+|.+-.+ +..+|| .-+
T Consensus 219 ~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ 296 (478)
T KOG1129|consen 219 CTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQ 296 (478)
T ss_pred chHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhh
Confidence 3344455567899999999999999999998885 45667888899999999999999999998875 344454 445
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCC
Q 044791 350 INGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGH 429 (623)
Q Consensus 350 i~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~ 429 (623)
...+-..++.++|.++|++..+.. ..++....++...|.-.++.|.|+++|.++..- |+. +...|+.+.-+|.-.+.
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ 373 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQ 373 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcc
Confidence 667888899999999999998763 336667777888888999999999999999965 765 66788898888888999
Q ss_pred HHHHHHHHHhhCC--CCCCH--HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCc
Q 044791 430 LFEAQQFIEQKLP--FEPTA--EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSR 505 (623)
Q Consensus 430 ~e~A~~lf~~~m~--~~Pd~--~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~ 505 (623)
+|-++..|++++. -.|+. ..|..|-......||+..|.+.+++...-++.+ ...++.|----.+
T Consensus 374 ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h------------~ealnNLavL~~r 441 (478)
T KOG1129|consen 374 IDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH------------GEALNNLAVLAAR 441 (478)
T ss_pred hhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch------------HHHHHhHHHHHhh
Confidence 9999999999443 23543 678888888889999999999999998876665 3477777666677
Q ss_pred cccccCCcccchHHHHHHHHHHHHCCcccCc
Q 044791 506 LVEFRNPTLYRDDEKLKALNQMKESTYVPDT 536 (623)
Q Consensus 506 ~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~ 536 (623)
.|+. ++|..++..-+ .+.|+.
T Consensus 442 ~G~i--------~~Arsll~~A~--s~~P~m 462 (478)
T KOG1129|consen 442 SGDI--------LGARSLLNAAK--SVMPDM 462 (478)
T ss_pred cCch--------HHHHHHHHHhh--hhCccc
Confidence 8865 69998885443 234544
No 62
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.69 E-value=2.7e-06 Score=95.49 Aligned_cols=319 Identities=14% Similarity=0.084 Sum_probs=214.8
Q ss_pred HHcCCHHHHHHHHHcCCC---CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044791 257 CQEGKVKEAIELMDKGVK---ADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARR 333 (623)
Q Consensus 257 ~~~g~~~~A~~l~~~~~~---pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~ 333 (623)
...|++++|++++.+-|+ .....|.+|...|-..|+.+++...+-.+-... +-|...|..+.....+.|.++.|.-
T Consensus 150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence 334999999999987444 345789999999999999999998885544432 4478999999999999999999999
Q ss_pred HHHHhhcCChH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 334 VFDHMADRSMD---SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQ----TFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 334 lf~~m~~~~~~---tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~----ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
.|.+..+.+.. .+---+..|-+.|+..+|+.-|.+|......-|.. +--.++..+...++.+.|++.++....
T Consensus 229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 99998765443 44445677899999999999999999863311222 333456677788888999999999887
Q ss_pred hcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC--CCCCH----------------------HHHHH----HHHHHH
Q 044791 407 EFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP--FEPTA----------------------EFWEA----LRNYAR 458 (623)
Q Consensus 407 ~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~--~~Pd~----------------------~ty~~----Li~a~~ 458 (623)
+++-..+...++.++..|.+...++.|.......-. .++|. ..|.. +.-++.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 655566778899999999999999999888766111 11221 11111 111222
Q ss_pred HcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcce
Q 044791 459 IHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRY 538 (623)
Q Consensus 459 ~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t 538 (623)
.....+..+.+...+.+- ..... -+...|.-+.+++...|++ .+|+++|......-..=+...
T Consensus 389 ~L~~~e~~e~ll~~l~~~-n~~~~--------d~~dL~~d~a~al~~~~~~--------~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVED-NVWVS--------DDVDLYLDLADALTNIGKY--------KEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred cccccchHHHHHHHHHHh-cCChh--------hhHHHHHHHHHHHHhcccH--------HHHHHHHHHHhcCccccchhh
Confidence 333333333333333332 21122 3466778888999999988 699999977764422222222
Q ss_pred eeeccCHHHHHHHHHHHHhHHHHHHhcccCC----CC-Ch--hHHHhhHhhhcchhHHHHHHHHHhCCc
Q 044791 539 VLHDIDQEAKEQALLYHSERLAIAYGLISTP----AR-TP--LRIIKNLRVCGDCHNAIKIMSRIVGRE 600 (623)
Q Consensus 539 ~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m----~~-~~--~~i~~~l~~~g~~~~a~~l~~~~~~~~ 600 (623)
..+.+-++...|..++|..+++.. +. .. +.+-.-+-.-|+.++|++.+..|...+
T Consensus 452 -------w~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D 513 (895)
T KOG2076|consen 452 -------WYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPD 513 (895)
T ss_pred -------hHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCC
Confidence 223334556667777777665542 21 11 223344567788889999888876443
No 63
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.67 E-value=7.3e-06 Score=84.73 Aligned_cols=282 Identities=16% Similarity=0.107 Sum_probs=201.7
Q ss_pred HHHHHHH--HcCCHHHHHHHHHcCCC--C-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044791 251 ADLARLC--QEGKVKEAIELMDKGVK--A-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 251 ~li~~~~--~~g~~~~A~~l~~~~~~--p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~ 325 (623)
.+..++. -.|+|..|+++..+.-. + -...|..-..+--..|+.+.|-.++.+..+.--.++..++-+........
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 4455554 37999999999965222 2 23456666777888899999999999998863356777888888899999
Q ss_pred CCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHH
Q 044791 326 GSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE-------QTFLAVFSACGSADAIE 395 (623)
Q Consensus 326 g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~-------~ty~~li~a~~~~g~~e 395 (623)
|+.+.|..-.+.+.+ ...........+|.+.|++.+++.++.+|.+.|+--|. .+|..++.-+...+..+
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 999999988886654 56778999999999999999999999999999876553 37888888888888888
Q ss_pred HHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 396 EAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 396 ~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
.-...++..-.+ .+-+...-.+++.-+.++|+.++|.++.+++++..-|.. . ...-.+.+-++.+.-+++.+....
T Consensus 247 gL~~~W~~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L-~~~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 247 GLKTWWKNQPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-L-CRLIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHHhccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-H-HHHHhhcCCCCchHHHHHHHHHHH
Confidence 777778777653 334455556788889999999999999988666333333 1 122244556666655555555555
Q ss_pred cCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHH
Q 044791 476 LDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYH 555 (623)
Q Consensus 476 m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~ 555 (623)
..+++ | ..+.++=.-|.+.+.| .+|.++|+ ......|+..+|..+-+ .+..
T Consensus 323 ~h~~~----------p--~L~~tLG~L~~k~~~w--------~kA~~~le--aAl~~~~s~~~~~~la~-------~~~~ 373 (400)
T COG3071 323 QHPED----------P--LLLSTLGRLALKNKLW--------GKASEALE--AALKLRPSASDYAELAD-------ALDQ 373 (400)
T ss_pred hCCCC----------h--hHHHHHHHHHHHhhHH--------HHHHHHHH--HHHhcCCChhhHHHHHH-------HHHH
Confidence 44332 2 3555666667777877 48888886 45566777777766554 4555
Q ss_pred HhHHHHHHhc
Q 044791 556 SERLAIAYGL 565 (623)
Q Consensus 556 ~g~l~~A~~l 565 (623)
.|...+|...
T Consensus 374 ~g~~~~A~~~ 383 (400)
T COG3071 374 LGEPEEAEQV 383 (400)
T ss_pred cCChHHHHHH
Confidence 5555555443
No 64
>PF12854 PPR_1: PPR repeat
Probab=98.65 E-value=3.6e-08 Score=66.95 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=28.9
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 044791 306 STIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMA 339 (623)
Q Consensus 306 ~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~ 339 (623)
.|+.||..+||+||++||+.|++++|+++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788888888888888888888888888888884
No 65
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.63 E-value=0.0001 Score=78.18 Aligned_cols=301 Identities=14% Similarity=0.055 Sum_probs=172.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHc---C--CCCCHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHH---HH
Q 044791 249 SVADLARLCQEGKVKEAIELMDK---G--VKADAS-CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNK---VI 319 (623)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~l~~~---~--~~pd~~-ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~---Li 319 (623)
+..+...+...|+.++|...+.+ . ...+.. ........+...|++++|.+++++.++.. +.|...+.. +.
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~ 87 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHH
Confidence 33444555566777776665532 1 122332 22233445677899999999999998863 334445442 22
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 044791 320 EMYGKCGSMTDARRVFDHMADRS---MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEE 396 (623)
Q Consensus 320 ~~y~k~g~~~~A~~lf~~m~~~~---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~ 396 (623)
......+..+.+.++++.....+ ...+..+...+...|++++|+..+++..+.. ..+...+..+..++...|++++
T Consensus 88 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~e 166 (355)
T cd05804 88 GLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKE 166 (355)
T ss_pred HhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 22223456666666665532222 2244556678899999999999999999864 2245678888889999999999
Q ss_pred HHHHHHHHHhhcCCCCCc--cchhhHHHHHHhcCCHHHHHHHHHhhCCCCC--CH-HHH-H--HHHHHHHHcCChhHHHH
Q 044791 397 AFIHFESMKSEFGISPGT--EHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP--TA-EFW-E--ALRNYARIHGDIDLEDH 468 (623)
Q Consensus 397 A~~l~~~m~~~~g~~p~~--~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P--d~-~ty-~--~Li~a~~~~g~~~~A~~ 468 (623)
|+.++++........++. ..|..+...+...|+.++|..+|++.....| .. ... + .++.-+...|..+.+.+
T Consensus 167 A~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 246 (355)
T cd05804 167 GIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDR 246 (355)
T ss_pred HHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHH
Confidence 999999887532222232 2355678889999999999999999443333 21 111 1 33334445565443333
Q ss_pred HHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccC-cceeeeccCHHH
Q 044791 469 AEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPD-TRYVLHDIDQEA 547 (623)
Q Consensus 469 ~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd-~~t~~~li~~~~ 547 (623)
. +.+......... . ............++...|+. ++|.++++.++......+ .......+....
T Consensus 247 w-~~~~~~~~~~~~-----~-~~~~~~~~~~a~~~~~~~~~--------~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~ 311 (355)
T cd05804 247 W-EDLADYAAWHFP-----D-HGLAFNDLHAALALAGAGDK--------DALDKLLAALKGRASSADDNKQPARDVGLPL 311 (355)
T ss_pred H-HHHHHHHHhhcC-----c-ccchHHHHHHHHHHhcCCCH--------HHHHHHHHHHHHHHhccCchhhhHHhhhHHH
Confidence 3 222221111000 0 01112222455566667766 588888887765433211 111111122122
Q ss_pred HHHHHHHHHhHHHHHHhcc
Q 044791 548 KEQALLYHSERLAIAYGLI 566 (623)
Q Consensus 548 k~~~~~~~~g~l~~A~~ll 566 (623)
-........|+.++|...+
T Consensus 312 l~A~~~~~~g~~~~A~~~L 330 (355)
T cd05804 312 AEALYAFAEGNYATALELL 330 (355)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 2234455667777777665
No 66
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=2.5e-06 Score=89.85 Aligned_cols=214 Identities=15% Similarity=0.116 Sum_probs=167.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHH
Q 044791 289 NPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQL 365 (623)
Q Consensus 289 ~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l 365 (623)
-.|+.-+|.+-|+..++.... +...|--+..+|....+-++....|++...- +..+|..-...+.-.+++++|..-
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 357888999999999886433 2333777888999999999999999988764 445888888888889999999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCC
Q 044791 366 FEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE 444 (623)
Q Consensus 366 ~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~ 444 (623)
|++.++. .| +++.|.-+..+..+.+++++++..|++.+++ +.--.+.|+.....+...+++++|.+.|+.+|+++
T Consensus 417 F~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 417 FQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9999875 44 5678888888888999999999999999965 33456789999999999999999999999988877
Q ss_pred CCH----HHHHHHHH----HHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccc
Q 044791 445 PTA----EFWEALRN----YARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYR 516 (623)
Q Consensus 445 Pd~----~ty~~Li~----a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~ 516 (623)
|+. +.-..||. .+.=.+++..|+.+++...+++++. ...|.+|-......|+.
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkc------------e~A~~tlaq~~lQ~~~i------- 553 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKC------------EQAYETLAQFELQRGKI------- 553 (606)
T ss_pred cccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchH------------HHHHHHHHHHHHHHhhH-------
Confidence 762 11111111 1112388999999999999988774 44777777776777765
Q ss_pred hHHHHHHHHHH
Q 044791 517 DDEKLKALNQM 527 (623)
Q Consensus 517 ~~eal~~~~~M 527 (623)
++|+++|++-
T Consensus 554 -~eAielFEks 563 (606)
T KOG0547|consen 554 -DEAIELFEKS 563 (606)
T ss_pred -HHHHHHHHHH
Confidence 7999999543
No 67
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.59 E-value=3.8e-05 Score=80.80 Aligned_cols=259 Identities=14% Similarity=0.154 Sum_probs=153.8
Q ss_pred HcCCHHHHHHHHHc--CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044791 258 QEGKVKEAIELMDK--GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVF 335 (623)
Q Consensus 258 ~~g~~~~A~~l~~~--~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf 335 (623)
..|++..|.++|++ ...||..+|.+.|+-=.+-+.++.|..+|++.+- +.|++.+|-.....=-++|.+.-|..+|
T Consensus 153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 46788888888876 6779999999999988888999999999998876 6788888877777667777777777666
Q ss_pred HHhhcC--------------------------------------------------------------------------
Q 044791 336 DHMADR-------------------------------------------------------------------------- 341 (623)
Q Consensus 336 ~~m~~~-------------------------------------------------------------------------- 341 (623)
+...+.
T Consensus 231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 654321
Q ss_pred ----------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---HhcCCHHHHHHHH
Q 044791 342 ----------SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE-------QTFLAVFSAC---GSADAIEEAFIHF 401 (623)
Q Consensus 342 ----------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~-------~ty~~li~a~---~~~g~~e~A~~l~ 401 (623)
|-.+|--.+..--..|+.+...++|++.... +.|-. +.|.-+=-+| ....+++.+.++|
T Consensus 311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2226666666666778888888888887754 44411 1221111111 2345666666666
Q ss_pred HHHHhhcCCCC-CccchhhHHHHHH----hcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 402 ESMKSEFGISP-GTEHYLGLVGVLG----KCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 402 ~~m~~~~g~~p-~~~ty~~Li~~~~----k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
...+. +-| ...||..|=-+|+ ++.++..|.+++..++|.-|-..+|...|..=...+++|.+..+++.+.+.
T Consensus 390 q~~l~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 390 QACLD---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHh---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 65552 222 3334443333332 344555555555555554455555555555444455555555555555554
Q ss_pred CCCCCCCC----------------------CCCC--CCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHC
Q 044791 477 DPSKADPK----------------------KIPT--PPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKES 530 (623)
Q Consensus 477 ~~~~~~~~----------------------~~~~--~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~ 530 (623)
.|.++.+= .+.+ .-.....+.+.|+--...|.+ +.|..+++.+.+.
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~--------ekaR~LYerlL~r 536 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEF--------EKARALYERLLDR 536 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchH--------HHHHHHHHHHHHh
Confidence 44443210 0000 012244555666666666666 6888888777544
No 68
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.58 E-value=1.4e-05 Score=77.28 Aligned_cols=197 Identities=17% Similarity=0.052 Sum_probs=153.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHH
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYAD 355 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~ 355 (623)
+..-|.-.|...|+...|.+-+++.++.. +.+..+|..+...|.+.|..+.|.+.|++... .+....|....-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 46677778899999999999999998863 23578888889999999999999999987764 345578888888899
Q ss_pred cCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-ccchhhHHHHHHhcCCHHHH
Q 044791 356 NGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TEHYLGLVGVLGKCGHLFEA 433 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~~~k~g~~e~A 433 (623)
.|++++|+..|++....-.-+ -..||..+.-+..+.|+.+.|.+.|++..+ +.|+ ..+...|.....+.|++..|
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999988753222 246788888888889999999999988873 3443 44566777888889999999
Q ss_pred HHHHHhhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 434 QQFIEQKL-PFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 434 ~~lf~~~m-~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
..++++.- ...++..+.-..|..-...|+.+.+-+.-..+....|.
T Consensus 193 r~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 193 RLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 99988821 24467777777888888889988777766667665544
No 69
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=5.7e-06 Score=88.71 Aligned_cols=264 Identities=15% Similarity=0.085 Sum_probs=191.0
Q ss_pred HHHHHHcCCHHHHHHHHHcC---CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 044791 253 LARLCQEGKVKEAIELMDKG---VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMT 329 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~---~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~ 329 (623)
...+-..+++.+.+++++.- ..+...++..-|.++.+.|+..+-..+=.+|++. .+-...+|-++.--|.-.|+.+
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~s 329 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYS 329 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcH
Confidence 33455678888888887642 2234445666677888888877777777777775 3445789999999999999999
Q ss_pred HHHHHHHHhhcCChH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 330 DARRVFDHMADRSMD---SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 330 ~A~~lf~~m~~~~~~---tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
+|++.|.+....|.. .|-.+...|+-.|+.|.|+..|...-+.- .-...-+.-+.--|.+.+.++.|.++|....
T Consensus 330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~- 407 (611)
T KOG1173|consen 330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL- 407 (611)
T ss_pred HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHH-
Confidence 999999987655543 89999999999999999999888876531 1111223334456778899999999998877
Q ss_pred hcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCC-------CC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 407 EFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-------FE-PTAEFWEALRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 407 ~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-------~~-Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
++.| |...++-+.-+....+.+.+|..+|+.++. .. --..+++.|..+|.+.+..++|+..++....+.
T Consensus 408 --ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 408 --AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred --hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 6777 566666666666778899999999988442 11 134568888889999999999999999999988
Q ss_pred CCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeecc
Q 044791 478 PSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDI 543 (623)
Q Consensus 478 ~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li 543 (623)
+.+.. |+.++--.+...|.+ +.|++.| =+..++.||-.+...++
T Consensus 486 ~k~~~------------~~asig~iy~llgnl--------d~Aid~f--hKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 486 PKDAS------------THASIGYIYHLLGNL--------DKAIDHF--HKALALKPDNIFISELL 529 (611)
T ss_pred CCchh------------HHHHHHHHHHHhcCh--------HHHHHHH--HHHHhcCCccHHHHHHH
Confidence 77644 555554455566665 6888887 33446778766555444
No 70
>PF12854 PPR_1: PPR repeat
Probab=98.54 E-value=1.1e-07 Score=64.63 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044791 373 GLQPNEQTFLAVFSACGSADAIEEAFIHFESM 404 (623)
Q Consensus 373 g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m 404 (623)
|+.||.+||++||++||+.|++++|+++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55666666666666666666666666666655
No 71
>PLN02789 farnesyltranstransferase
Probab=98.53 E-value=2.3e-05 Score=81.90 Aligned_cols=200 Identities=8% Similarity=0.020 Sum_probs=146.0
Q ss_pred HHHcCCHHHHHHHHHcCCC--CCH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH--H
Q 044791 256 LCQEGKVKEAIELMDKGVK--ADA-SCFYTLFELCGNPK-WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSM--T 329 (623)
Q Consensus 256 ~~~~g~~~~A~~l~~~~~~--pd~-~ty~~Ll~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~--~ 329 (623)
+...++.++|+.++.+.+. |+. .+|+....++...| ++++++++++++++...+ +..+|+...-++.+.|+. +
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhH
Confidence 4556788999999987544 443 34666666666677 689999999999987533 667788776667777763 7
Q ss_pred HHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCH----HHHHH
Q 044791 330 DARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA---DAI----EEAFI 399 (623)
Q Consensus 330 ~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~---g~~----e~A~~ 399 (623)
+++.++++|.+ ++..+|+....++...|++++|++.++++++.++. |..+|+....++.+. |+. +++++
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 78899988876 45669999999999999999999999999987655 556666666555544 323 46667
Q ss_pred HHHHHHhhcCCCC-CccchhhHHHHHHhc----CCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHc
Q 044791 400 HFESMKSEFGISP-GTEHYLGLVGVLGKC----GHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIH 460 (623)
Q Consensus 400 l~~~m~~~~g~~p-~~~ty~~Li~~~~k~----g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~ 460 (623)
+...++ .+.| |...|+-+...|... ++..+|.+++.+.+...| +......|++.|+..
T Consensus 205 y~~~aI---~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 205 YTIDAI---LANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHH---HhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 776666 3345 677888888888773 445678888888555455 567788888888863
No 72
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=3.9e-06 Score=90.29 Aligned_cols=225 Identities=12% Similarity=0.069 Sum_probs=170.7
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHH
Q 044791 285 ELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDE 361 (623)
Q Consensus 285 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~ee 361 (623)
..+.+.|++.+|.-+|+..++... -++..|--|...-...++=..|+..|.+..+. +....-.|...|...|.-.+
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 344677889999999988888643 36888988988888888888888888888765 44577777778999999999
Q ss_pred HHHHHHHHHHcCCC-----C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHH
Q 044791 362 GLQLFEQMRKLGLQ-----P---NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEA 433 (623)
Q Consensus 362 A~~l~~eM~~~g~~-----P---d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A 433 (623)
|+.+|+..+....+ + +...-+. ..+.....+.+..++|-++....+.++|..++..|.-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999888754311 0 0000000 222333445667788888877767667888889999999999999999
Q ss_pred HHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCC
Q 044791 434 QQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNP 512 (623)
Q Consensus 434 ~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~ 512 (623)
.++|+.++.++| |..+||-|...++...+.++|+.++.+.+++.|.-+. .-|+ |--+|...|.|
T Consensus 450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR-----------~RyN-lgIS~mNlG~y--- 514 (579)
T KOG1125|consen 450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVR-----------VRYN-LGISCMNLGAY--- 514 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeee-----------eehh-hhhhhhhhhhH---
Confidence 999999898889 6689999999999999999999999999999988664 2344 33457788888
Q ss_pred cccchHHHHHHH---HHHHHCCc
Q 044791 513 TLYRDDEKLKAL---NQMKESTY 532 (623)
Q Consensus 513 ~~~~~~eal~~~---~~M~~~Gi 532 (623)
+||.+.| -.|..++.
T Consensus 515 -----kEA~~hlL~AL~mq~ks~ 532 (579)
T KOG1125|consen 515 -----KEAVKHLLEALSMQRKSR 532 (579)
T ss_pred -----HHHHHHHHHHHHhhhccc
Confidence 5888888 44555543
No 73
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.49 E-value=2.3e-05 Score=86.74 Aligned_cols=250 Identities=14% Similarity=0.114 Sum_probs=171.5
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCCHHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKADASCFYT 282 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd~~ty~~ 282 (623)
.+|++++|++.++.-.. .+.+... ..-.....|.+.|+.++|..+|+. ...||...|..
T Consensus 16 e~g~~~~AL~~L~~~~~--~I~Dk~~-----------------~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~ 76 (517)
T PF12569_consen 16 EAGDYEEALEHLEKNEK--QILDKLA-----------------VLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYR 76 (517)
T ss_pred HCCCHHHHHHHHHhhhh--hCCCHHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 68999999999985422 3333222 222556678899999999999986 34577666555
Q ss_pred HHHHHh-C-----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHhhcCChH-HHHHHHHHHH
Q 044791 283 LFELCG-N-----PKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMT-DARRVFDHMADRSMD-SWHLMINGYA 354 (623)
Q Consensus 283 Ll~~~~-~-----~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~-~A~~lf~~m~~~~~~-tyn~Li~~~~ 354 (623)
.+..+. - ..+.+...++|+++...- |.....-.+.-.+.....+. .+...+..+..+++. +|+.|-..|.
T Consensus 77 ~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~ 154 (517)
T PF12569_consen 77 GLEEALGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYK 154 (517)
T ss_pred HHHHHHhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHc
Confidence 544443 2 235788889999887642 44333333333333322333 344555666777875 6777777777
Q ss_pred HcCChHHHHHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-ccch
Q 044791 355 DNGLGDEGLQLFEQMRKL----G----------LQPNE--QTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TEHY 417 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~----g----------~~Pd~--~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~ty 417 (623)
...+.+-...++.+.... | -.|+. .++..+...|-..|++++|++++++.+ ...|+ +..|
T Consensus 155 d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI---~htPt~~ely 231 (517)
T PF12569_consen 155 DPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI---EHTPTLVELY 231 (517)
T ss_pred ChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hcCCCcHHHH
Confidence 666666666777776532 1 12444 345555666888999999999999988 45675 6678
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 044791 418 LGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDP 478 (623)
Q Consensus 418 ~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~ 478 (623)
..-...|-+.|++++|.+.++.+-.... |-..=+-.+..+.+.|++++|++.+..+..-+.
T Consensus 232 ~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 232 MTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 8888999999999999999998433333 555556677788899999999999998876554
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.46 E-value=1.8e-05 Score=76.40 Aligned_cols=201 Identities=14% Similarity=0.061 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKGVKADA---SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~~~pd~---~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k 324 (623)
...-|.-+|...|+...|..-+++.+..|. .+|..+...|-+.|..+.|.+.|++.++.. +-+-.+.|+....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 445677889999999999999998655443 578889999999999999999999999864 2367899999999999
Q ss_pred cCCHHHHHHHHHHhhc-CC----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044791 325 CGSMTDARRVFDHMAD-RS----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFI 399 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~-~~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~ 399 (623)
.|++++|...|++... +. ..+|..+.-+..+.|+++.|...|++.++..-. ...+.-.+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHH
Confidence 9999999999998765 32 238999999999999999999999999986322 34567788888899999999999
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHH
Q 044791 400 HFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEA 452 (623)
Q Consensus 400 l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~ 452 (623)
+++..... ..++..+.-..|..--+.|+.+.|.++=...-...|...-|-.
T Consensus 195 ~~~~~~~~--~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~q~ 245 (250)
T COG3063 195 YLERYQQR--GGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEYQT 245 (250)
T ss_pred HHHHHHhc--ccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHh
Confidence 99998864 3377777666677777789988887765551124455544433
No 75
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.46 E-value=1e-05 Score=88.44 Aligned_cols=135 Identities=22% Similarity=0.234 Sum_probs=102.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCChH--HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 044791 318 VIEMYGKCGSMTDARRVFDHMADRSMD--SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIE 395 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~~~~~--tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e 395 (623)
.|.+......|.+|+.+++.+...++. -|..+..-|+..|+++.|.++|.+.- .++-.|..|.+.|+++
T Consensus 738 aieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 345556678888999999888877666 37777788999999999999987632 3566788899999999
Q ss_pred HHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 044791 396 EAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEE 471 (623)
Q Consensus 396 ~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~ 471 (623)
.|.++-++.. |-...+..|-+-..-+-+.|++.+|+++|-. ++ .|+. .|..|-++|..|...++.+
T Consensus 809 da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyit-i~-~p~~-----aiqmydk~~~~ddmirlv~ 874 (1636)
T KOG3616|consen 809 DAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYIT-IG-EPDK-----AIQMYDKHGLDDDMIRLVE 874 (1636)
T ss_pred HHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEE-cc-CchH-----HHHHHHhhCcchHHHHHHH
Confidence 9988877665 5566677777777778888999999998887 66 5654 4567788888884444433
No 76
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.44 E-value=4.8e-06 Score=91.65 Aligned_cols=222 Identities=14% Similarity=0.058 Sum_probs=180.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG 326 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g 326 (623)
..-..+...+...|-...|+.+|++ ...|.-+|.+|+..|+-.+|..+..+-++ -+||...|..|++......
T Consensus 399 q~q~~laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s 471 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPS 471 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChH
Confidence 3344566778899999999999986 35678889999999999999999988877 4789999999999999888
Q ss_pred CHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 327 SMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 327 ~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
-+++|.++++....+--..++. ...+.++++++.+.|+.-.+.. ..-..||-.+..+..+.+++..|.+.|....
T Consensus 472 ~yEkawElsn~~sarA~r~~~~---~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv- 546 (777)
T KOG1128|consen 472 LYEKAWELSNYISARAQRSLAL---LILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV- 546 (777)
T ss_pred HHHHHHHHhhhhhHHHHHhhcc---ccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh-
Confidence 9999999998775542222222 2344799999999999887653 2245788888888889999999999999887
Q ss_pred hcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCC
Q 044791 407 EFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE-PTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKAD 482 (623)
Q Consensus 407 ~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~-Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~ 482 (623)
...| +...||+|-.+|.+.|+-.+|...+.+++.+. -+...|-..+-...+.|.++.|.+++..+.+|......
T Consensus 547 --tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d 622 (777)
T KOG1128|consen 547 --TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKD 622 (777)
T ss_pred --hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhccc
Confidence 5677 47899999999999999999999999977643 23456767777778999999999999999999877664
No 77
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=98.44 E-value=1.1e-06 Score=98.18 Aligned_cols=211 Identities=14% Similarity=0.173 Sum_probs=142.9
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 044791 298 KVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSM----DSWHLMINGYADNGLGDEGLQLFEQMRKLG 373 (623)
Q Consensus 298 ~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~----~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g 373 (623)
.++..|...|+.|+.+||..||.-||..|+++.|- +|.-|+-++. ..++.++.+...+++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46677888999999999999999999999999999 9998876543 48999999999999988876
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HH---hh---cCC-------------CCC-ccchhhHHHHHHhcCCHHH
Q 044791 374 LQPNEQTFLAVFSACGSADAIEEAFIHFES-MK---SE---FGI-------------SPG-TEHYLGLVGVLGKCGHLFE 432 (623)
Q Consensus 374 ~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~-m~---~~---~g~-------------~p~-~~ty~~Li~~~~k~g~~e~ 432 (623)
.|...||+.|+.+|+..||+.. ++..++ |. .. .|+ .|. ...-.+++..+.-.|-++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 7889999999999999999765 222222 22 11 111 110 0001123444555566777
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCC
Q 044791 433 AQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNP 512 (623)
Q Consensus 433 A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~ 512 (623)
+++++.. +.......++..+++-+.... .-.+++....+.... .++..+|..++++..-.|+.
T Consensus 158 llkll~~-~Pvsa~~~p~~vfLrqnv~~n--tpvekLl~~cksl~e-----------~~~s~~l~a~l~~alaag~~--- 220 (1088)
T KOG4318|consen 158 LLKLLAK-VPVSAWNAPFQVFLRQNVVDN--TPVEKLLNMCKSLVE-----------APTSETLHAVLKRALAAGDV--- 220 (1088)
T ss_pred HHHHHhh-CCcccccchHHHHHHHhccCC--chHHHHHHHHHHhhc-----------CCChHHHHHHHHHHHhcCch---
Confidence 7777766 542211112211233333222 112244444444322 28899999999999999977
Q ss_pred cccchHHHHHHHHHHHHCCcccCcceeeecc
Q 044791 513 TLYRDDEKLKALNQMKESTYVPDTRYVLHDI 543 (623)
Q Consensus 513 ~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li 543 (623)
+-|..++.+|++.|+.-+...|--++
T Consensus 221 -----d~Ak~ll~emke~gfpir~HyFwpLl 246 (1088)
T KOG4318|consen 221 -----DGAKNLLYEMKEKGFPIRAHYFWPLL 246 (1088)
T ss_pred -----hhHHHHHHHHHHcCCCcccccchhhh
Confidence 69999999999999987776554443
No 78
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=1.6e-05 Score=85.31 Aligned_cols=203 Identities=14% Similarity=0.019 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKGVKADA---SCFYTLFELCGNPKWYENAKKVHDYFLQS--TIRGDLVLNNKVIEMY 322 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~~~pd~---~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~~y~~Li~~y 322 (623)
+|.++..-|.-.|+..+|.+.|.+....|. ..|-....+++-.|.-|.|+..|...-+. |.. -...| +.--|
T Consensus 314 sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey 390 (611)
T KOG1173|consen 314 SWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEY 390 (611)
T ss_pred chhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHH
Confidence 344444444455555555555554322221 34555555555555555555555544432 211 01111 23345
Q ss_pred HHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CC----CCCHHHHHHHHHHHHhcCC
Q 044791 323 GKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKL--GL----QPNEQTFLAVFSACGSADA 393 (623)
Q Consensus 323 ~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~--g~----~Pd~~ty~~li~a~~~~g~ 393 (623)
.+.++++-|.+.|.+... .|...++-+.......+.+.+|..+|+..++. .+ .--.-+++.|..+|.+.++
T Consensus 391 ~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 391 MRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 555666666666655443 24556666666666666777777777666521 00 0133456677777777777
Q ss_pred HHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 044791 394 IEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRN 455 (623)
Q Consensus 394 ~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~ 455 (623)
+++|+..|+.... -..-+..+|.++.-.|...|.++.|.+.|.+++.+.||..+-..|+.
T Consensus 471 ~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 471 YEEAIDYYQKALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 7777777776663 22335666777777777777777777777776666776665555555
No 79
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=5.1e-05 Score=78.67 Aligned_cols=225 Identities=14% Similarity=0.043 Sum_probs=110.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHc--CCCCCHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHH---------
Q 044791 251 ADLARLCQEGKVKEAIELMDK--GVKADASC-FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKV--------- 318 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~--~~~pd~~t-y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~L--------- 318 (623)
.+...+...|+.++|+..|++ .+.|+..+ ...-...+...|+++....+...+.... .-+..-|-.-
T Consensus 237 ~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~ 315 (564)
T KOG1174|consen 237 ALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKK 315 (564)
T ss_pred HHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhh
Confidence 566677778888888877765 33343321 1122223345555555555555444321 0111122222
Q ss_pred -------------------------HHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044791 319 -------------------------IEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 319 -------------------------i~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~ 370 (623)
.+++...|+.++|.-.|+.... .+..+|.-|+..|...|++.||.-+-++..
T Consensus 316 ~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~ 395 (564)
T KOG1174|consen 316 FERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTI 395 (564)
T ss_pred HHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHH
Confidence 2333444555555555543322 234455555555555555555554444433
Q ss_pred HcCCCCCHHHHHHHH-HHHHh-cCCHHHHHHHHHHHHhhcCCCCC-ccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 044791 371 KLGLQPNEQTFLAVF-SACGS-ADAIEEAFIHFESMKSEFGISPG-TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 371 ~~g~~Pd~~ty~~li-~a~~~-~g~~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
.. +.-++.+.+.+. ..|.. ...-|+|..+++.-. .+.|+ ....+.+...+...|+.++++.++++.+...||.
T Consensus 396 ~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~ 471 (564)
T KOG1174|consen 396 RL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV 471 (564)
T ss_pred HH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc
Confidence 22 122333333331 22221 222345555554433 33443 2233444555556666666666666655556666
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 448 EFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 448 ~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
...+.|.+.++..+.+.+|.+-+.....++|++
T Consensus 472 ~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 472 NLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 666666666666666666666666666655553
No 80
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.42 E-value=0.00026 Score=77.41 Aligned_cols=225 Identities=17% Similarity=0.135 Sum_probs=165.4
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044791 255 RLCQEGKVKEAIELMDKGVKADA---SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDA 331 (623)
Q Consensus 255 ~~~~~g~~~~A~~l~~~~~~pd~---~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A 331 (623)
.++..|+-++|.+..+.|++-|. ++|+.+.-.+....++++|++.|...++.+ +-|..++-.|--.=+..|+++..
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 45678999999999998887654 789999888888999999999999999865 33677887777777788888888
Q ss_pred HHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHH------HHHHHhcCCHHHHHHHH
Q 044791 332 RRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLG-LQPNEQTFLAV------FSACGSADAIEEAFIHF 401 (623)
Q Consensus 332 ~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g-~~Pd~~ty~~l------i~a~~~~g~~e~A~~l~ 401 (623)
...-....+. ....|..++.++.-.|++..|..++++.+..- -.|+...|.-. .....+.|.+++|.+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 7777766553 34489999999999999999999999998654 24565555433 23356788999999888
Q ss_pred HHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHH-HHH-HcCChhHHHHHHHHHHhcCCC
Q 044791 402 ESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRN-YAR-IHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 402 ~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~-a~~-~~g~~~~A~~~~~~~~~m~~~ 479 (623)
..-.. .+.-....-.+-.+.+.+.|++++|..+|...+...||.+-|...+. ++. -.+..+....++..+.+.-+.
T Consensus 209 ~~~e~--~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r 286 (700)
T KOG1156|consen 209 LDNEK--QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR 286 (700)
T ss_pred Hhhhh--HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc
Confidence 66552 22222233345567789999999999999996666788877766555 443 333343333677777776665
Q ss_pred CCC
Q 044791 480 KAD 482 (623)
Q Consensus 480 ~~~ 482 (623)
...
T Consensus 287 ~e~ 289 (700)
T KOG1156|consen 287 HEC 289 (700)
T ss_pred ccc
Confidence 554
No 81
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.41 E-value=2.8e-05 Score=90.71 Aligned_cols=224 Identities=15% Similarity=0.149 Sum_probs=174.4
Q ss_pred CCH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-Ch-HHHH
Q 044791 275 ADA-SCFYTLFELCGNPKWYENAKKVHDYFLQS-TIRG---DLVLNNKVIEMYGKCGSMTDARRVFDHMADR-SM-DSWH 347 (623)
Q Consensus 275 pd~-~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-g~~p---d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-~~-~tyn 347 (623)
|+. ..|-.-|.-....+++++|.++.+++++. ++.- -..+|.++++.-...|.-+...++|++..+- |. ..|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 443 45777788888899999999999998875 2211 1467888888888888889999999999863 33 3799
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhc
Q 044791 348 LMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKC 427 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~ 427 (623)
.|...|.+.+++++|.++|+.|.++ +.-....|...+..+.+..+-++|.+++.+..+...-.-.+......+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 9999999999999999999999976 334667888999999999999999999998884311111344445566677889
Q ss_pred CCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCcc
Q 044791 428 GHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRL 506 (623)
Q Consensus 428 g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~ 506 (623)
|+.+.+..+|+..+...| ....|+..|+.-.++|+.+.++.+++++.++.-... --+..|..+|+.-...
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k---------kmKfffKkwLeyEk~~ 1684 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK---------KMKFFFKKWLEYEKSH 1684 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh---------HhHHHHHHHHHHHHhc
Confidence 999999999999444344 568999999999999999999999999988755432 1266777888877776
Q ss_pred cc
Q 044791 507 VE 508 (623)
Q Consensus 507 ~~ 508 (623)
|+
T Consensus 1685 Gd 1686 (1710)
T KOG1070|consen 1685 GD 1686 (1710)
T ss_pred Cc
Confidence 65
No 82
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.41 E-value=0.00015 Score=79.12 Aligned_cols=226 Identities=14% Similarity=0.149 Sum_probs=140.1
Q ss_pred HHHHHHcCCHHHHHHHHHc--CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHH
Q 044791 253 LARLCQEGKVKEAIELMDK--GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD-LVLNNKVIEMYGKCGSMT 329 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~--~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~y~~Li~~y~k~g~~~ 329 (623)
+........++.|..+|.+ ...++...|.--+..---.+..++|++++++.++. -|+ ...|-.+...+-..++++
T Consensus 625 vKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie 702 (913)
T KOG0495|consen 625 VKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIE 702 (913)
T ss_pred HHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHH
Confidence 3333444455555555532 34444444444344333444555555555555442 222 234444444444555555
Q ss_pred HHHHHHHHhhc--C-ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 330 DARRVFDHMAD--R-SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 330 ~A~~lf~~m~~--~-~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
.|.+.|..-.+ + .+..|-.|...=-+.|.+-+|..+|++.+-++.+ +...|...|..=.+.|..+.|..++.....
T Consensus 703 ~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 703 MAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55554443222 2 2225666666666677777888888877766433 667788888888888888888777665554
Q ss_pred hc----------------------------CCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHH
Q 044791 407 EF----------------------------GISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-EFWEALRNYA 457 (623)
Q Consensus 407 ~~----------------------------g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ty~~Li~a~ 457 (623)
++ .+.-|.++..++...|-...++++|.+.|++++.+.||. .+|..+...+
T Consensus 782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfe 861 (913)
T KOG0495|consen 782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFE 861 (913)
T ss_pred hCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHH
Confidence 32 123344555555566666778999999999988877765 8999999999
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCC
Q 044791 458 RIHGDIDLEDHAEELMVDLDPSKA 481 (623)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~m~~~~~ 481 (623)
..+|.-+.-.+++..+..-+|...
T Consensus 862 l~hG~eed~kev~~~c~~~EP~hG 885 (913)
T KOG0495|consen 862 LRHGTEEDQKEVLKKCETAEPTHG 885 (913)
T ss_pred HHhCCHHHHHHHHHHHhccCCCCC
Confidence 999988888889998888776644
No 83
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.40 E-value=2e-05 Score=78.66 Aligned_cols=179 Identities=16% Similarity=0.052 Sum_probs=123.2
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCh---H---
Q 044791 275 ADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD----LVLNNKVIEMYGKCGSMTDARRVFDHMADRSM---D--- 344 (623)
Q Consensus 275 pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~---~--- 344 (623)
.....+..++..+...|++++|...|+++++.. |+ ..++..+..+|.+.|++++|+..|+++.+.+. .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 355678888888999999999999999988753 32 24677788899999999999999998875321 1
Q ss_pred HHHHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCcc
Q 044791 345 SWHLMINGYADN--------GLGDEGLQLFEQMRKLGLQPNE-QTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTE 415 (623)
Q Consensus 345 tyn~Li~~~~~~--------g~~eeA~~l~~eM~~~g~~Pd~-~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ 415 (623)
++..+..++... |++++|.+.|+++.+. .|+. ..+..+... .. .... .. .
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~~------~~-~-------- 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRNR------LA-G-------- 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHHH------HH-H--------
Confidence 455555666654 6788899999988876 3443 222222111 00 1100 00 0
Q ss_pred chhhHHHHHHhcCCHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 416 HYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT----AEFWEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 416 ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd----~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
....+...|.+.|++++|+..|++++...|+ ...+..+..++...|+.++|...++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0124566788889999999999885554443 367888888999999999888877777654
No 84
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=1.2e-05 Score=86.60 Aligned_cols=228 Identities=14% Similarity=0.077 Sum_probs=177.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCC---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKAD---ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS 327 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd---~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~ 327 (623)
.....+.+.|++.+|.-+|+..|+-| ...|--|..+-+..++-..|+..+.+.++.. +-+..+.-+|.-.|...|.
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 44556789999999999998766644 3578888889999999899999999999853 2267888999999999999
Q ss_pred HHHHHHHHHHhhcCChH-HHHHHH---------HHHHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHH
Q 044791 328 MTDARRVFDHMADRSMD-SWHLMI---------NGYADNGLGDEGLQLFEQMR-KLGLQPNEQTFLAVFSACGSADAIEE 396 (623)
Q Consensus 328 ~~~A~~lf~~m~~~~~~-tyn~Li---------~~~~~~g~~eeA~~l~~eM~-~~g~~Pd~~ty~~li~a~~~~g~~e~ 396 (623)
=..|+++|+.-...... .|...- ..+.....+.+..++|-++. ..+.++|...+..|.-.|--.|++++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 99999999876432110 110000 12223333556667776665 55655777777788888888999999
Q ss_pred HHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHH
Q 044791 397 AFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-EFWEALRNYARIHGDIDLEDHAEELMV 474 (623)
Q Consensus 397 A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ty~~Li~a~~~~g~~~~A~~~~~~~~ 474 (623)
|...|+..+ .++| |..+||-|...++...+.++|+.-|.+++.++|+. ..+..|.-.|...|.+++|.+.+=...
T Consensus 449 aiDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 449 AVDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999999988 5677 67899999999999999999999999999999986 466667778899999999988888888
Q ss_pred hcCCCCCC
Q 044791 475 DLDPSKAD 482 (623)
Q Consensus 475 ~m~~~~~~ 482 (623)
.|..++..
T Consensus 526 ~mq~ks~~ 533 (579)
T KOG1125|consen 526 SMQRKSRN 533 (579)
T ss_pred Hhhhcccc
Confidence 88777443
No 85
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.38 E-value=0.00012 Score=77.60 Aligned_cols=194 Identities=13% Similarity=-0.011 Sum_probs=131.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTI-RGDL-VLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMING 352 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~-~pd~-~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~ 352 (623)
..|..+...+...|+.+++.+.+.+..+... ..+. .........+...|++++|.+++++..+. +...+.. ..+
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 3566677777777888887777766654321 2232 22223345567789999999999987653 3334443 333
Q ss_pred HHHc----CChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHh
Q 044791 353 YADN----GLGDEGLQLFEQMRKLGLQPNE-QTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGK 426 (623)
Q Consensus 353 ~~~~----g~~eeA~~l~~eM~~~g~~Pd~-~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k 426 (623)
+... +..+.+.+.+.. .....|+. .....+...+...|++++|++.+++..+ +.| +...+..+..+|..
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~---~~p~~~~~~~~la~i~~~ 160 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE---LNPDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCcHHHHHHHHHHHH
Confidence 3333 444555555544 22233443 4445666778899999999999999984 344 45677888889999
Q ss_pred cCCHHHHHHHHHhhCCCCC---CH--HHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 427 CGHLFEAQQFIEQKLPFEP---TA--EFWEALRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 427 ~g~~e~A~~lf~~~m~~~P---d~--~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
.|++++|+.++++.+...| +. ..|..+...+...|+.++|..+++......
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~ 216 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS 216 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc
Confidence 9999999999999665433 32 346678888999999999999998875543
No 86
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=0.00026 Score=76.67 Aligned_cols=345 Identities=15% Similarity=0.114 Sum_probs=182.6
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCC--CCHHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVK--ADASCFYT 282 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~--pd~~ty~~ 282 (623)
.+|+|++|....+++.. ..|+ +...+..-+.++.+.+++++|+.+.+.... .+.+-+-.
T Consensus 24 ~~~e~e~a~k~~~Kil~--~~pd-----------------d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fE 84 (652)
T KOG2376|consen 24 KNGEYEEAVKTANKILS--IVPD-----------------DEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFE 84 (652)
T ss_pred cchHHHHHHHHHHHHHh--cCCC-----------------cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHH
Confidence 78999999999998854 2233 222233445667778888888877765322 22222212
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--------------------
Q 044791 283 LFELCGNPKWYENAKKVHDYFLQSTIRGD-LVLNNKVIEMYGKCGSMTDARRVFDHMADR-------------------- 341 (623)
Q Consensus 283 Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-------------------- 341 (623)
-..+..+.+..|+|+..++ |+.++ ..+...-...+.+.|++++|+.+|+.+.+.
T Consensus 85 KAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 2334446677888877776 33333 335555566677778888888888777431
Q ss_pred -----------ChHHHHHH---HHHHHHcCChHHHHHHHHHHHHcCC-------------CCCHH-HHHHHHHHHHhcCC
Q 044791 342 -----------SMDSWHLM---INGYADNGLGDEGLQLFEQMRKLGL-------------QPNEQ-TFLAVFSACGSADA 393 (623)
Q Consensus 342 -----------~~~tyn~L---i~~~~~~g~~eeA~~l~~eM~~~g~-------------~Pd~~-ty~~li~a~~~~g~ 393 (623)
...+|..+ ...+...|++.+|+++++..+..+. .-... .-.-|.-++-..|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 01134333 3446778999999999988832211 10111 11223344567899
Q ss_pred HHHHHHHHHHHHhhcCCCCCc----cchhhHHHHHHhc------------------------------------------
Q 044791 394 IEEAFIHFESMKSEFGISPGT----EHYLGLVGVLGKC------------------------------------------ 427 (623)
Q Consensus 394 ~e~A~~l~~~m~~~~g~~p~~----~ty~~Li~~~~k~------------------------------------------ 427 (623)
-++|..++...++. .. +|. ..-|.|+.+-...
T Consensus 240 t~ea~~iy~~~i~~-~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~ 317 (652)
T KOG2376|consen 240 TAEASSIYVDIIKR-NP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLA 317 (652)
T ss_pred hHHHHHHHHHHHHh-cC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888754 22 121 1222222111110
Q ss_pred ---CCHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhh
Q 044791 428 ---GHLFEAQQFIEQKLP-FEPTAEFWEALRNYARIHG--DIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILD 501 (623)
Q Consensus 428 ---g~~e~A~~lf~~~m~-~~Pd~~ty~~Li~a~~~~g--~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~ 501 (623)
+..+.+.++-.. +. ..|. ..+.+|+..+.+.. ....+.+.+..+.+-.+.+. ......++.
T Consensus 318 l~tnk~~q~r~~~a~-lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s-----------~~v~L~~aQ 384 (652)
T KOG2376|consen 318 LFTNKMDQVRELSAS-LPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKS-----------KVVLLLRAQ 384 (652)
T ss_pred HHhhhHHHHHHHHHh-CCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchh-----------HHHHHHHHH
Confidence 111111111111 11 1122 33334444332221 23333344443333222221 223334445
Q ss_pred hcCccccccCCcccchHHHHHHHH--------HHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccC-CCCC
Q 044791 502 GKSRLVEFRNPTLYRDDEKLKALN--------QMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLIST-PART 572 (623)
Q Consensus 502 ~~~~~~~~~~~~~~~~~eal~~~~--------~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~-m~~~ 572 (623)
.....|.+ +.|++++. ...+.+..|-.+.+...+ ..+..+.-....-+++|.+.+.. +...
T Consensus 385 l~is~gn~--------~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l--~~~~~~~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 385 LKISQGNP--------EVALEILSLFLESWKSSILEAKHLPGTVGAIVAL--YYKIKDNDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHhcCCH--------HHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHH--HHhccCCccHHHHHHHHHHHHHHhcccc
Confidence 56666766 68888887 667778888776654332 23333344456677778776643 3333
Q ss_pred hh--HHHhh---H-hhhcchhHHHHHHHHHhC
Q 044791 573 PL--RIIKN---L-RVCGDCHNAIKIMSRIVG 598 (623)
Q Consensus 573 ~~--~i~~~---l-~~~g~~~~a~~l~~~~~~ 598 (623)
.. .++.- + .+.|.-.+|..++.++..
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 21 12211 1 334888899999998876
No 87
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.33 E-value=0.00063 Score=74.40 Aligned_cols=188 Identities=15% Similarity=0.130 Sum_probs=78.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHH
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYAD 355 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~ 355 (623)
||+.....|.+.+.++-|..+|...++. +..+...|..++..=-..|..++-..+|.+... ...+.|-.....+..
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh
Confidence 4445555555555555555555554443 222334444444333334444444444444432 122233333334444
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHH
Q 044791 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQ 435 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~ 435 (623)
.|++-.|..++....+.... +...|...+....+...+|+|..+|.... ...++...|..-+....-.+..++|.+
T Consensus 597 agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar---~~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKAR---SISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHh---ccCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 44444444444444433211 33344444444444444444444444433 233344444333333333444444444
Q ss_pred HHHhhCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHH
Q 044791 436 FIEQKLPFEPTAE-FWEALRNYARIHGDIDLEDHAEE 471 (623)
Q Consensus 436 lf~~~m~~~Pd~~-ty~~Li~a~~~~g~~~~A~~~~~ 471 (623)
++++++...|+.. .|-.+...+-..++++.|.+++.
T Consensus 673 llEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~ 709 (913)
T KOG0495|consen 673 LLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYL 709 (913)
T ss_pred HHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4444444344432 22233333444444444444433
No 88
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=0.0018 Score=68.54 Aligned_cols=357 Identities=14% Similarity=0.171 Sum_probs=207.9
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCC--CCH-HHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVK--ADA-SCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~--pd~-~ty~ 281 (623)
.++++..|.++|++... .++ .....+..-+..=.+...+..|..++++.+. |-+ ..|-
T Consensus 85 sq~e~~RARSv~ERALd-------vd~------------r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy 145 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALD-------VDY------------RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY 145 (677)
T ss_pred hHHHHHHHHHHHHHHHh-------ccc------------ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH
Confidence 68999999999998833 111 0122333455666788999999999987543 433 2344
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh--cCChHHHHHHHHHHHHcCCh
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMA--DRSMDSWHLMINGYADNGLG 359 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~--~~~~~tyn~Li~~~~~~g~~ 359 (623)
--+..=-..|++..|.++|++..+ ..||...|.+.|+.=.+-..++.|..+|++.. .+++.+|---...=.+.|..
T Consensus 146 KY~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 146 KYIYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcH
Confidence 445555667899999999999988 78999999999999999999999999999764 56776666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHH----------------------------------
Q 044791 360 DEGLQLFEQMRKLGLQPNEQTFLAVFSACG----SADAIEEAFIHF---------------------------------- 401 (623)
Q Consensus 360 eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~----~~g~~e~A~~l~---------------------------------- 401 (623)
.-|..+|+...+. + -|...--.|+.+++ .+..++.|.-+|
T Consensus 224 ~~aR~VyerAie~-~-~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 224 ALARSVYERAIEF-L-GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred HHHHHHHHHHHHH-h-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 6666666655432 0 01111111111111 112222222222
Q ss_pred ----------HHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC-CCCCH--HHHHH---H-----HHHHHHc
Q 044791 402 ----------ESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-FEPTA--EFWEA---L-----RNYARIH 460 (623)
Q Consensus 402 ----------~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-~~Pd~--~ty~~---L-----i~a~~~~ 460 (623)
+.+.++ -.-|-.+|--.+..-...|+.+...++|++++. +.|-. ..|.- | +-.=...
T Consensus 302 ~Iv~KRk~qYE~~v~~--np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ 379 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSK--NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEA 379 (677)
T ss_pred HHhhhhhhHHHHHHHh--CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 122211 112455555566666667788888888887554 33311 11111 1 1111245
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCC---------------CC----------CCCCCchhhHHHHhhhcCccccccCCccc
Q 044791 461 GDIDLEDHAEELMVDLDPSKADPK---------------KI----------PTPPPKKRTAISILDGKSRLVEFRNPTLY 515 (623)
Q Consensus 461 g~~~~A~~~~~~~~~m~~~~~~~~---------------~~----------~~~~p~~~t~~~li~~~~~~~~~~~~~~~ 515 (623)
.|++.+.++++...++.|...-.. .+ -|..|..-+|...|+.-...+.|
T Consensus 380 ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~ef------ 453 (677)
T KOG1915|consen 380 EDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREF------ 453 (677)
T ss_pred hhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhH------
Confidence 667777777777766655432210 00 13345555666666555555555
Q ss_pred chHHHHHHHHHHHHCCcccCc-ceeeeccCHHHHHHHHHHHHhHHHHHHhcccCC-----CCChhHHHhhH----hhhcc
Q 044791 516 RDDEKLKALNQMKESTYVPDT-RYVLHDIDQEAKEQALLYHSERLAIAYGLISTP-----ARTPLRIIKNL----RVCGD 585 (623)
Q Consensus 516 ~~~eal~~~~~M~~~Gi~Pd~-~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m-----~~~~~~i~~~l----~~~g~ 585 (623)
|...+++++..+.+ |.. .+|. +-+.+-...|..+.|..++.-- ...|.-++++| ..+|.
T Consensus 454 --DRcRkLYEkfle~~--Pe~c~~W~-------kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E 522 (677)
T KOG1915|consen 454 --DRCRKLYEKFLEFS--PENCYAWS-------KYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE 522 (677)
T ss_pred --HHHHHHHHHHHhcC--hHhhHHHH-------HHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch
Confidence 56666666655443 221 1111 1112333455666665554431 24445577776 67788
Q ss_pred hhHHHHHHHHHhCCceee
Q 044791 586 CHNAIKIMSRIVGRELIV 603 (623)
Q Consensus 586 ~~~a~~l~~~~~~~~~~~ 603 (623)
...|.++..+++++.-.+
T Consensus 523 ~ekaR~LYerlL~rt~h~ 540 (677)
T KOG1915|consen 523 FEKARALYERLLDRTQHV 540 (677)
T ss_pred HHHHHHHHHHHHHhcccc
Confidence 888888888888765443
No 89
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.29 E-value=4.4e-05 Score=76.22 Aligned_cols=178 Identities=15% Similarity=-0.014 Sum_probs=117.1
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCCH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-CC-HHHH
Q 044791 244 QVLPPSVADLARLCQEGKVKEAIELMDK--GVKADA----SCFYTLFELCGNPKWYENAKKVHDYFLQSTIR-GD-LVLN 315 (623)
Q Consensus 244 ~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~-pd-~~~y 315 (623)
........+...+...|++++|+..|++ ...|+. .++..+..++...|++++|+..++++++.... +. ..++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 3455677888889999999999999975 233432 46788889999999999999999999885321 11 1245
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHhhcCChH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044791 316 NKVIEMYGKC--------GSMTDARRVFDHMADRSMD---SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAV 384 (623)
Q Consensus 316 ~~Li~~y~k~--------g~~~~A~~lf~~m~~~~~~---tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~l 384 (623)
..+..++.+. |+.++|++.|+.+.+.+.. .+..+... +..... .. .....+
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~----~~~~~~-------~~-------~~~~~~ 172 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRM----DYLRNR-------LA-------GKELYV 172 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHH----HHHHHH-------HH-------HHHHHH
Confidence 5566666654 7899999999998753322 22222111 000000 00 011244
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 385 FSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
...+.+.|++++|...++.....+.-.| ....+..+..++.+.|+.++|..+++.
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~ 228 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAV 228 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5567777888888888887775432222 245667777888888888888887777
No 90
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=0.00017 Score=80.15 Aligned_cols=202 Identities=11% Similarity=0.014 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH-------------HcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELM-------------DKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVL 314 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~-------------~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~ 314 (623)
+|.+|...|.+..++|-|.-.+ +..-.++ .+=.-+.......|.+++|+.+|++-++
T Consensus 759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--------- 828 (1416)
T KOG3617|consen 759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR--------- 828 (1416)
T ss_pred HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------
Confidence 3445566666666666655443 1112232 2222233334567889999999998766
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCC-hHHHHHHHHHHHHcCChHHHHHHHHHH----------HHcC---------C
Q 044791 315 NNKVIEMYGKCGSMTDARRVFDHMADRS-MDSWHLMINGYADNGLGDEGLQLFEQM----------RKLG---------L 374 (623)
Q Consensus 315 y~~Li~~y~k~g~~~~A~~lf~~m~~~~-~~tyn~Li~~~~~~g~~eeA~~l~~eM----------~~~g---------~ 374 (623)
|..|=..|-..|+|++|+++-+.--.-- -.||..-..-+-..++.+.|++.|++. +... -
T Consensus 829 ~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~ 908 (1416)
T KOG3617|consen 829 YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR 908 (1416)
T ss_pred HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh
Confidence 4556677888999999998865322111 127777777778888899998888863 2221 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHH
Q 044791 375 QPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALR 454 (623)
Q Consensus 375 ~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li 454 (623)
+-|...|.-....+-..|+.|.|+.+|...+. |-+++...|-.|+.++|-.+-++ .-|......|.
T Consensus 909 ~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~e----sgd~AAcYhla 974 (1416)
T KOG3617|consen 909 KRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEE----SGDKAACYHLA 974 (1416)
T ss_pred ccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHh----cccHHHHHHHH
Confidence 22555666666677778999999999987762 56788889999999999999999 45777778899
Q ss_pred HHHHHcCChhHHHHHHHHH
Q 044791 455 NYARIHGDIDLEDHAEELM 473 (623)
Q Consensus 455 ~a~~~~g~~~~A~~~~~~~ 473 (623)
+.|-..|++.+|...+-+.
T Consensus 975 R~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 975 RMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHhhhhHHHHHHHHHHHHH
Confidence 9999999999777766654
No 91
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.0002 Score=70.69 Aligned_cols=222 Identities=15% Similarity=0.104 Sum_probs=154.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAK-KVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMT 329 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~-~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~ 329 (623)
-+-.+|...|.+...+.-.+.+-.+....+-.+......-++.++-+ ++.+.+......-+......-...|+..|+++
T Consensus 46 y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~d 125 (299)
T KOG3081|consen 46 YMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFD 125 (299)
T ss_pred HHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChH
Confidence 34556667777666555555555666666666666666666655544 55556655544545444455566789999999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 044791 330 DARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS----ADAIEEAFIHFESMK 405 (623)
Q Consensus 330 ~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~----~g~~e~A~~l~~~m~ 405 (623)
+|++..+... +..+.-.=+..+.+..++|-|...+++|.+.. +..|.+-|..++.+ .+.+.+|.-+|++|.
T Consensus 126 eAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s 200 (299)
T KOG3081|consen 126 EALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELS 200 (299)
T ss_pred HHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHh
Confidence 9999998843 44444444556778889999999999999752 56777767666654 467999999999998
Q ss_pred hhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChh-HHHHHHHHHHhcCCC
Q 044791 406 SEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDID-LEDHAEELMVDLDPS 479 (623)
Q Consensus 406 ~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~-~A~~~~~~~~~m~~~ 479 (623)
. ...|+..+.+.+..++...|++++|+.++++++...+ +..+...+|..-...|.-. ...+....++...+.
T Consensus 201 ~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 201 E--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred c--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 4 4778888889999999999999999999999776444 5566666666655666653 234555555554444
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.21 E-value=3.5e-05 Score=84.36 Aligned_cols=110 Identities=13% Similarity=0.119 Sum_probs=82.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCC
Q 044791 350 INGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGH 429 (623)
Q Consensus 350 i~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~ 429 (623)
|.+-....+|.+|+.+++.+..... -.--|..+.+-|+..|+++.|+++|-+.- .++--|++|.+.|+
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhcccc
Confidence 3345566778888888887776532 23347778888999999999999996532 24567999999999
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 044791 430 LFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEE 471 (623)
Q Consensus 430 ~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~ 471 (623)
|+.|.++-++.++-+...+.|-+-..-+-++|++.+|+.++-
T Consensus 807 w~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 807 WEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 999999999967655566777777777888999886665543
No 93
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.20 E-value=0.00022 Score=71.24 Aligned_cols=243 Identities=15% Similarity=0.055 Sum_probs=163.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHc--CCCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHc
Q 044791 250 VADLARLCQEGKVKEAIELMDK--GVKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNK-VIEMYGKC 325 (623)
Q Consensus 250 ~~li~~~~~~g~~~~A~~l~~~--~~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~-Li~~y~k~ 325 (623)
.+.|-.+.+..++++|++++.. .-.| +....+.|..+|....++..|-+.|+++-. ..|...-|.. -...+.+.
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHh
Confidence 3666677888889999988843 2233 667788888888888888888888888766 3454444432 13345566
Q ss_pred CCHHHHHHHHHHhhc-----------------------------------CChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044791 326 GSMTDARRVFDHMAD-----------------------------------RSMDSWHLMINGYADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 326 g~~~~A~~lf~~m~~-----------------------------------~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~ 370 (623)
+.+.+|++|...|.. .+..+-+.......+.|++++|.+-|++..
T Consensus 92 ~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl 171 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL 171 (459)
T ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHH
Confidence 667777776666543 122244445555678999999999999998
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-------------CCcc--------chhhHHHH------
Q 044791 371 KLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGIS-------------PGTE--------HYLGLVGV------ 423 (623)
Q Consensus 371 ~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~-------------p~~~--------ty~~Li~~------ 423 (623)
+-|---....||..+.- .+.|+.+.|+++..+++++ |++ +|+. +-+.|+.+
T Consensus 172 qvsGyqpllAYniALaH-y~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaA 249 (459)
T KOG4340|consen 172 QVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAA 249 (459)
T ss_pred hhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhh
Confidence 75544456788877754 4668999999999998876 543 2211 12233333
Q ss_pred -HHhcCCHHHHHHHHHhhCC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHH
Q 044791 424 -LGKCGHLFEAQQFIEQKLP----FEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAIS 498 (623)
Q Consensus 424 -~~k~g~~e~A~~lf~~~m~----~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~ 498 (623)
+.+.|+++.|.+-+-. |. .+-|.+|...+.-.-. .|++.+..+-+..+.++.|. . ..||..
T Consensus 250 Ieyq~~n~eAA~eaLtD-mPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf--P----------~ETFAN 315 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTD-MPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF--P----------PETFAN 315 (459)
T ss_pred hhhhcccHHHHHHHhhc-CCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC--C----------hHHHHH
Confidence 4566889999988888 75 3446677766543322 45555555666667776552 2 679999
Q ss_pred HhhhcCcccccc
Q 044791 499 ILDGKSRLVEFR 510 (623)
Q Consensus 499 li~~~~~~~~~~ 510 (623)
++-.||+..-|.
T Consensus 316 lLllyCKNeyf~ 327 (459)
T KOG4340|consen 316 LLLLYCKNEYFD 327 (459)
T ss_pred HHHHHhhhHHHh
Confidence 999999998873
No 94
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.20 E-value=0.00018 Score=84.15 Aligned_cols=231 Identities=13% Similarity=0.146 Sum_probs=171.7
Q ss_pred CCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC---CCCC-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 044791 238 QCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG---VKAD-----ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIR 309 (623)
Q Consensus 238 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~---~~pd-----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~ 309 (623)
..++++.....|..-|.-....+++++|.+++++. +.+. ...|.++++.-..-|.-+...++|+++.+. .
T Consensus 1450 lvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--c 1527 (1710)
T KOG1070|consen 1450 LVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--C 1527 (1710)
T ss_pred HHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--c
Confidence 44555666667777888888999999999999763 2221 245777777666667788899999999884 3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHH-HH
Q 044791 310 GDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN--EQTF-LA 383 (623)
Q Consensus 310 pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd--~~ty-~~ 383 (623)
--..+|..|...|.+.+..++|.++|+.|.++ ....|...+..+.+..+-++|..++.+.++. -|. .+-+ .-
T Consensus 1528 d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1528 DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISK 1605 (1710)
T ss_pred chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHH
Confidence 34678999999999999999999999999874 4458999999999999999999999998875 343 2211 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC--CCCC--HHHHHHHHHHHHH
Q 044791 384 VFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP--FEPT--AEFWEALRNYARI 459 (623)
Q Consensus 384 li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~--~~Pd--~~ty~~Li~a~~~ 459 (623)
.+..=.+.|+.+++..+|+.....+-- -...|+..|++-.+.|+.+.+..+|++++. +.+. -..|.--+..=..
T Consensus 1606 fAqLEFk~GDaeRGRtlfEgll~ayPK--RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPK--RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred HHHHHhhcCCchhhHHHHHHHHhhCcc--chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHh
Confidence 222334679999999999999875322 456799999999999999999999999554 3332 2455655555556
Q ss_pred cCChhHHHHHHHHHH
Q 044791 460 HGDIDLEDHAEELMV 474 (623)
Q Consensus 460 ~g~~~~A~~~~~~~~ 474 (623)
+|+-+.++.+-.+..
T Consensus 1684 ~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1684 HGDEKNVEYVKARAK 1698 (1710)
T ss_pred cCchhhHHHHHHHHH
Confidence 677655544444433
No 95
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.20 E-value=3.2e-05 Score=71.34 Aligned_cols=110 Identities=7% Similarity=-0.061 Sum_probs=61.9
Q ss_pred HHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-
Q 044791 334 VFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP- 412 (623)
Q Consensus 334 lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p- 412 (623)
+|++..+.+...+..+..++...|++++|...|+....... .+..+|..+..++...|++++|+..|+...+ +.|
T Consensus 15 ~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~---l~p~ 90 (144)
T PRK15359 15 ILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQP-WSWRAHIALAGTWMMLKEYTTAINFYGHALM---LDAS 90 (144)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh---cCCC
Confidence 44444444444444455556666666666666666655421 1445555666666666666666666666652 233
Q ss_pred CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 044791 413 GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 413 ~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
+...+..+..++...|+.++|+..|++++...|+.
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~ 125 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD 125 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 44555556666666666666666666655555544
No 96
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=0.00038 Score=72.38 Aligned_cols=159 Identities=12% Similarity=0.028 Sum_probs=69.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHH---HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044791 309 RGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDS---WHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVF 385 (623)
Q Consensus 309 ~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~t---yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li 385 (623)
.-|+.....+.+++...|+.++|+..|+.....|..+ ...-...+.+.|+++....+...+.... +-...-|..-+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence 3345555555555555555555555555444333221 1111222344555555555444444321 11122222223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCCh
Q 044791 386 SACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDI 463 (623)
Q Consensus 386 ~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~ 463 (623)
..+....+++.|+.+-+..+ .+.+ +...|-.-..++...|+.++|.--|+.+..+.| +..+|.-|+..|...|++
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I---~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCI---DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHh---ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchH
Confidence 33334455555555554444 2222 122222222344455555555555555333343 445555555555555555
Q ss_pred hHHHHHHH
Q 044791 464 DLEDHAEE 471 (623)
Q Consensus 464 ~~A~~~~~ 471 (623)
.+|....+
T Consensus 385 kEA~~~An 392 (564)
T KOG1174|consen 385 KEANALAN 392 (564)
T ss_pred HHHHHHHH
Confidence 55544333
No 97
>PLN02789 farnesyltranstransferase
Probab=98.18 E-value=0.00026 Score=74.10 Aligned_cols=192 Identities=9% Similarity=0.059 Sum_probs=137.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhhcC---ChHHHHHHHHHHHH
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG-SMTDARRVFDHMADR---SMDSWHLMINGYAD 355 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g-~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~ 355 (623)
+..+-.++...+..++|+.+++++++.. +-+..+|+....++.+.| ++++|+..++++.+. +..+|+.....+.+
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~ 118 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH
Confidence 3344445566788999999999999853 224567777777777777 689999999998764 44478777666677
Q ss_pred cCCh--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhc---CC-
Q 044791 356 NGLG--DEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKC---GH- 429 (623)
Q Consensus 356 ~g~~--eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~---g~- 429 (623)
.|+. ++++.++++|.+...+ +..+|+...-++...|++++|++.++.+++. +. -+...|+....++.+. |.
T Consensus 119 l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d~-~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-DV-RNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-CC-CchhHHHHHHHHHHhccccccc
Confidence 7763 7889999999976433 6788888888888999999999999999954 32 2556676666555544 32
Q ss_pred ---HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcC----ChhHHHHHHHHHHh
Q 044791 430 ---LFEAQQFIEQKLPFEP-TAEFWEALRNYARIHG----DIDLEDHAEELMVD 475 (623)
Q Consensus 430 ---~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g----~~~~A~~~~~~~~~ 475 (623)
.++++++..+++...| |...|+.+...+...+ ...+|.+....+..
T Consensus 196 ~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 196 EAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred cccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 3467777766677677 5688998888887633 23335444444433
No 98
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.12 E-value=5.7e-05 Score=83.39 Aligned_cols=153 Identities=14% Similarity=0.142 Sum_probs=78.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 044791 316 NKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIE 395 (623)
Q Consensus 316 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e 395 (623)
-.+...+...|-..+|+.+|+++. .|.-+|.+|+..|+.++|..+...-.++ .||...|..+.+.....--+|
T Consensus 402 ~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHHHH
Confidence 345555666666666666666553 5555666666666666666665555542 556666666665555555555
Q ss_pred HHHHHHHHHHhhc-------------------------CCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-H
Q 044791 396 EAFIHFESMKSEF-------------------------GISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-E 448 (623)
Q Consensus 396 ~A~~l~~~m~~~~-------------------------g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ 448 (623)
+|+++++....+- .+.| -..+|-.+..+..+++++..|.+.|.......||- .
T Consensus 475 kawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~e 554 (777)
T KOG1128|consen 475 KAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAE 554 (777)
T ss_pred HHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchh
Confidence 5555554433210 1111 22334444444444555555555555534444432 4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 449 FWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 449 ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
.||+|-.+|.+.|+..+|...+....+
T Consensus 555 aWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 555 AWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred hhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 555555555555555544444443333
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.07 E-value=0.00021 Score=69.57 Aligned_cols=121 Identities=14% Similarity=0.188 Sum_probs=71.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHH-HhcCC--HH
Q 044791 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVL-GKCGH--LF 431 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~-~k~g~--~e 431 (623)
.++.++++..++..++.. ..|...|..+...|...|++++|...|+... .+.| +...+..+..++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 445566666666655542 2255566666666666677777776666665 2334 444555555543 45555 36
Q ss_pred HHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 432 EAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 432 ~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
+|.+++++++...| +...+..|...+...|++++|+..++.+.++.+.+
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 67777766555555 44556666666666777777777777666665543
No 100
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.07 E-value=6.2e-06 Score=55.68 Aligned_cols=34 Identities=29% Similarity=0.681 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE 378 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~ 378 (623)
+||+||.+|++.|++++|.++|++|++.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 6889999999999999999999999988888873
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.06 E-value=9.8e-05 Score=68.08 Aligned_cols=105 Identities=10% Similarity=-0.016 Sum_probs=68.7
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---Ch
Q 044791 267 ELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SM 343 (623)
Q Consensus 267 ~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~ 343 (623)
.+|++.+..+...+..+..++...|++++|.+.|+..+... +.+...|..+..++.+.|++++|+..|+...+. +.
T Consensus 14 ~~~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~ 92 (144)
T PRK15359 14 DILKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP 92 (144)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 34444444444445556666777777777777777776643 235667777777777777777777777766653 34
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 344 DSWHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 344 ~tyn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
..+..+..++...|++++|+..|++..+.
T Consensus 93 ~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 93 EPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46777777777777777777777777664
No 102
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.05 E-value=8.3e-05 Score=76.77 Aligned_cols=185 Identities=15% Similarity=0.123 Sum_probs=126.0
Q ss_pred HHHHHHHHc-CCHHHHHHHHHc----CCCCCH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044791 251 ADLARLCQE-GKVKEAIELMDK----GVKADA-SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324 (623)
Q Consensus 251 ~li~~~~~~-g~~~~A~~l~~~----~~~pd~-~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k 324 (623)
.++..|... ++-+.++.-+++ ....+. ........++...|++++|++++... -+.......+.+|.+
T Consensus 70 ~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~ 143 (290)
T PF04733_consen 70 RLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLK 143 (290)
T ss_dssp HHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHH
Confidence 445555544 445556555543 222222 33333345677889999999988642 367888889999999
Q ss_pred cCCHHHHHHHHHHhhcCChH-HHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044791 325 CGSMTDARRVFDHMADRSMD-SWHLMINGYAD----NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFI 399 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~~~~~-tyn~Li~~~~~----~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~ 399 (623)
.+++|.|.+.|+.|.+-+.. +-..|..+++. .+.+.+|+-+|+|+.+. ..++..+.+.+..++...|++++|.+
T Consensus 144 ~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~ 222 (290)
T PF04733_consen 144 MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEE 222 (290)
T ss_dssp TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999864332 33334444332 34699999999998654 66788999999999999999999999
Q ss_pred HHHHHHhhcCCCC-CccchhhHHHHHHhcCCH-HHHHHHHHhhCC-CCCC
Q 044791 400 HFESMKSEFGISP-GTEHYLGLVGVLGKCGHL-FEAQQFIEQKLP-FEPT 446 (623)
Q Consensus 400 l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~-e~A~~lf~~~m~-~~Pd 446 (623)
++.+... ..| +..+...+|.+....|+. +.+.+++.+ +. ..|+
T Consensus 223 ~L~~al~---~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q-L~~~~p~ 268 (290)
T PF04733_consen 223 LLEEALE---KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ-LKQSNPN 268 (290)
T ss_dssp HHHHHCC---C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH-CHHHTTT
T ss_pred HHHHHHH---hccCCHHHHHHHHHHHHHhCCChhHHHHHHHH-HHHhCCC
Confidence 9998763 334 456667778777788887 778888888 54 3343
No 103
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.03 E-value=0.00017 Score=77.08 Aligned_cols=127 Identities=14% Similarity=0.119 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD 392 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g 392 (623)
....+|+..+...++++.|+.+|+++.+.+....-.|+..+...++..+|++++++.++.. .-|......-...|.+.+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 4445667777778899999999999988887777788888888889999999999988652 235566666667788899
Q ss_pred CHHHHHHHHHHHHhhcCCCCC-ccchhhHHHHHHhcCCHHHHHHHHHhhCCCC
Q 044791 393 AIEEAFIHFESMKSEFGISPG-TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE 444 (623)
Q Consensus 393 ~~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~ 444 (623)
+.+.|+.+.+++. .+.|+ ..+|..|..+|.+.|++++|+..++. +...
T Consensus 249 ~~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs-~Pm~ 297 (395)
T PF09295_consen 249 KYELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNS-CPML 297 (395)
T ss_pred CHHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc-CcCC
Confidence 9999999999888 55674 56899999999999999999988888 6633
No 104
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.03 E-value=0.00065 Score=78.11 Aligned_cols=131 Identities=8% Similarity=-0.036 Sum_probs=80.4
Q ss_pred CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC---hHHHHH
Q 044791 273 VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD-LVLNNKVIEMYGKCGSMTDARRVFDHMADRS---MDSWHL 348 (623)
Q Consensus 273 ~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~---~~tyn~ 348 (623)
...+...+-.|..+....|.+++|+.+++...+ +.|| ......++.++.+.+++++|+..+++....+ ....+.
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 334455666666666666666777666666666 3343 4455556666666666666666666665432 235555
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 349 MINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 349 Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
+..++.+.|++++|+++|++....+. -+..++..+..++-+.|+.++|...|+....
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666677666666666321 1355666666666666666666666666664
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.02 E-value=0.00035 Score=80.24 Aligned_cols=164 Identities=6% Similarity=0.034 Sum_probs=112.1
Q ss_pred ccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCCH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC
Q 044791 234 NNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKADA-SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRG 310 (623)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd~-~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p 310 (623)
.+..+.+.-..+...+..|.....+.|++++|+.+++. .+.||. .....++.++.+.+++++|+..+++.+.... -
T Consensus 74 ~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p-~ 152 (694)
T PRK15179 74 ELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGS-S 152 (694)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCC-C
Confidence 33333333333445555666677788888888888875 566765 4566777788888888888888888887542 2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMADRS---MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a 387 (623)
+......+..++.+.|+.++|+.+|++....+ ..++..+..++-+.|+.++|...|++..+. ..+.+..|+..+
T Consensus 153 ~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~-- 229 (694)
T PRK15179 153 SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL-- 229 (694)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH--
Confidence 56777778888888888888888888887543 347777888888888888888888888764 234445555554
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 044791 388 CGSADAIEEAFIHFESMK 405 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~ 405 (623)
+++..-+.+++++.
T Consensus 230 ----~~~~~~~~~~~~~~ 243 (694)
T PRK15179 230 ----VDLNADLAALRRLG 243 (694)
T ss_pred ----HHHHHHHHHHHHcC
Confidence 33344445555554
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.02 E-value=0.00065 Score=66.16 Aligned_cols=152 Identities=7% Similarity=-0.003 Sum_probs=106.0
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044791 253 LARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDAR 332 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~ 332 (623)
+..|...|+++.+..-.+....|. ..+...++.+++...++..++.. +.|...|..|...|...|++++|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456778888887644432211111 12223566777877787777754 447888888888888999999999
Q ss_pred HHHHHhhc---CChHHHHHHHHHH-HHcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 333 RVFDHMAD---RSMDSWHLMINGY-ADNGL--GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 333 ~lf~~m~~---~~~~tyn~Li~~~-~~~g~--~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
..|++..+ .+...|..+..++ ...|+ .++|.++|++.++.+.. +..++..+..++.+.|++++|+..|+++.+
T Consensus 94 ~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 94 LAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99887765 3555777777764 66677 48899999888886433 567777788888888999999999988884
Q ss_pred hcCCCCCccc
Q 044791 407 EFGISPGTEH 416 (623)
Q Consensus 407 ~~g~~p~~~t 416 (623)
...|+..-
T Consensus 173 --l~~~~~~r 180 (198)
T PRK10370 173 --LNSPRVNR 180 (198)
T ss_pred --hCCCCccH
Confidence 33444433
No 107
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.00 E-value=1e-05 Score=54.54 Aligned_cols=33 Identities=30% Similarity=0.676 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 044791 344 DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP 376 (623)
Q Consensus 344 ~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P 376 (623)
.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 108
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.00 E-value=0.00079 Score=80.87 Aligned_cols=260 Identities=8% Similarity=0.009 Sum_probs=169.4
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCC-------CC--
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGV-------KA-- 275 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~-------~p-- 275 (623)
..|++++|...+++.... .+..... ......+.+...+...|++++|...+++.+ .+
T Consensus 464 ~~g~~~~A~~~~~~al~~--~~~~~~~------------~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~ 529 (903)
T PRK04841 464 NDGDPEEAERLAELALAE--LPLTWYY------------SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHY 529 (903)
T ss_pred hCCCHHHHHHHHHHHHhc--CCCccHH------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHH
Confidence 689999999999977331 1110000 011223455666778999999999886422 11
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-------
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQS----TIR--G-DLVLNNKVIEMYGKCGSMTDARRVFDHMADR------- 341 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~--p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~------- 341 (623)
...++..+..++...|++++|...+++.... |.. + ...++..+...+...|++++|...+++....
T Consensus 530 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 609 (903)
T PRK04841 530 ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ 609 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence 1235566777888999999999999887653 221 1 2344556677788889999999999876431
Q ss_pred -ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc
Q 044791 342 -SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTF-----LAVFSACGSADAIEEAFIHFESMKSEFGISPGT 414 (623)
Q Consensus 342 -~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty-----~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~ 414 (623)
....+..+...+...|++++|...++++....-.. ....+ ...+..+...|+.+.|...+...... ......
T Consensus 610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~ 688 (903)
T PRK04841 610 QQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNH 688 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccch
Confidence 12256667778889999999999999886531111 11111 11224455689999999998775531 111110
Q ss_pred ---cchhhHHHHHHhcCCHHHHHHHHHhhCC------CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 415 ---EHYLGLVGVLGKCGHLFEAQQFIEQKLP------FEPT-AEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 415 ---~ty~~Li~~~~k~g~~e~A~~lf~~~m~------~~Pd-~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
..+..+..++...|+.++|..++++++. ...+ ..+...+..++...|+.+.|...+....++...
T Consensus 689 ~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 689 FLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 1134566778889999999999998443 1111 245666677888999999999998888876644
No 109
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.98 E-value=0.001 Score=67.79 Aligned_cols=225 Identities=14% Similarity=0.144 Sum_probs=142.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHH---HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHc
Q 044791 250 VADLARLCQEGKVKEAIELMDKGVKADASCFYTLFE---LCGNPKWYENAKKVHDYFLQSTIRGDLVLNNK-VIEMYGKC 325 (623)
Q Consensus 250 ~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~---~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~-Li~~y~k~ 325 (623)
.-|...+...|.+.+|+.-|...+..|+..|-++.+ .|...|+-..|+.=+.+.++ ++||-..-.. -...+.+.
T Consensus 42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhc
Confidence 356777888899999999998888877777766654 56667777777777777777 5676432221 24556788
Q ss_pred CCHHHHHHHHHHhhcCCh----H------------HH--HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 326 GSMTDARRVFDHMADRSM----D------------SW--HLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~~~----~------------ty--n~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a 387 (623)
|.++.|..=|+.+...+. + .| ...+..+.-.|+...|+.+...+++.. .-|+..|..-..+
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc 198 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKC 198 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHH
Confidence 888888888887765322 0 12 223444556778888888888877741 2255566666677
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHH----HHHHH-------HH-
Q 044791 388 CGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAE----FWEAL-------RN- 455 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~----ty~~L-------i~- 455 (623)
|...|++..|+.=+....+ =-..+..++--+-..+...|+.+.++...++.+.+.||-. .|..| .+
T Consensus 199 ~i~~~e~k~AI~Dlk~ask--Ls~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~ 276 (504)
T KOG0624|consen 199 YIAEGEPKKAIHDLKQASK--LSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESA 276 (504)
T ss_pred HHhcCcHHHHHHHHHHHHh--ccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHH
Confidence 7777887777765544431 1122344555556667777777777777777666666542 12111 11
Q ss_pred -HHHHcCChhHHHHHHHHHHhcCCC
Q 044791 456 -YARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 456 -a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
.....+++-++.+..+.+.+.++.
T Consensus 277 e~~ie~~~~t~cle~ge~vlk~ep~ 301 (504)
T KOG0624|consen 277 EQAIEEKHWTECLEAGEKVLKNEPE 301 (504)
T ss_pred HHHHhhhhHHHHHHHHHHHHhcCCc
Confidence 234456666666666666666655
No 110
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.97 E-value=0.0037 Score=68.62 Aligned_cols=332 Identities=15% Similarity=0.133 Sum_probs=192.7
Q ss_pred cccccc-----cCCChHHHHHHHHHhcCCC-CCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc-
Q 044791 199 NQWNNQ-----QNQGYPQARNSYQQVSPGH-QIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK- 271 (623)
Q Consensus 199 ~~w~~~-----~~g~~~~A~~lf~~m~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~- 271 (623)
..|.+. -.|++..|.++.+...... ..|+...+-.+ ....-......+.|.+++|++-+.+
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~s------------e~~Ly~n~i~~E~g~~q~ale~L~~~ 211 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHS------------ELLLYQNQILIEAGSLQKALEHLLDN 211 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHH------------HHHHHHHHHHHHcccHHHHHHHHHhh
Confidence 356655 6789999999988774322 11221111100 1111224456788999999998853
Q ss_pred -CCCCCHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHHHHH-HHHHHhhcCC---hH
Q 044791 272 -GVKADASCF-YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNN-KVIEMYGKCGSMTDAR-RVFDHMADRS---MD 344 (623)
Q Consensus 272 -~~~pd~~ty-~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~-~Li~~y~k~g~~~~A~-~lf~~m~~~~---~~ 344 (623)
.-..|-..| .+-...+.+.+++++|..++..++.. .||..-|. .+..++.+..+.-+++ .+|....+.- ..
T Consensus 212 e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~ 289 (700)
T KOG1156|consen 212 EKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHEC 289 (700)
T ss_pred hhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccccc
Confidence 333444443 35566778899999999999999985 46655554 4555555454444555 6776664321 00
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh---cCC----------C
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSE---FGI----------S 411 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~---~g~----------~ 411 (623)
.-..=++.+-...-.+..-+++..+.+.|+.+ ++..+..-|-.-...+--+++.-.+... .|. .
T Consensus 290 p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~ 366 (700)
T KOG1156|consen 290 PRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEP 366 (700)
T ss_pred chhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCC
Confidence 00000111111112233445666777888764 3344444433322222122222222210 011 2
Q ss_pred CCcc--chhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCC
Q 044791 412 PGTE--HYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAE-FWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPT 488 (623)
Q Consensus 412 p~~~--ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~-ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~ 488 (623)
|... ++-.++..|-+.|+++.|+.+++.+++..|+.+ .|-+-.+.+...|+++.|...++...+|+..+.-
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~------ 440 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA------ 440 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH------
Confidence 3333 344567788899999999999999999888874 5666667888999999999999999998876554
Q ss_pred CCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHH---HHHHHHHHHHhHHHHHHhc
Q 044791 489 PPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQE---AKEQALLYHSERLAIAYGL 565 (623)
Q Consensus 489 ~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~---~k~~~~~~~~g~l~~A~~l 565 (623)
.|..+..-+|.+ .+ +++|.++.....+.|. +..-..+.+.-. ...+..+.+.+++.+|+.-
T Consensus 441 --INsKcAKYmLrA----n~--------i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKk 504 (700)
T KOG1156|consen 441 --INSKCAKYMLRA----NE--------IEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKK 504 (700)
T ss_pred --HHHHHHHHHHHc----cc--------cHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHH
Confidence 444555555543 32 3688888877776665 333333333210 1233456677788888765
Q ss_pred ccCC
Q 044791 566 ISTP 569 (623)
Q Consensus 566 l~~m 569 (623)
+...
T Consensus 505 fh~i 508 (700)
T KOG1156|consen 505 FHEI 508 (700)
T ss_pred HhhH
Confidence 5443
No 111
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.96 E-value=0.00043 Score=80.47 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=33.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcCC--CCCHH-HHHHHHHHHhCCCCHHHHHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKGV--KADAS-CFYTLFELCGNPKWYENAKKV 299 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~~--~pd~~-ty~~Ll~~~~~~g~~~~A~~l 299 (623)
..+..||..|...+++++|.++.+..+ .|+.. .|-.+...+...++.+.|..+
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv 87 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL 87 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh
Confidence 345588888999999999999987533 34432 233333355555655555444
No 112
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.00067 Score=66.99 Aligned_cols=155 Identities=15% Similarity=0.037 Sum_probs=115.1
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcC
Q 044791 281 YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNG 357 (623)
Q Consensus 281 ~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g 357 (623)
..+-..+.-.|+-+.+..+....... ...|....+.++....+.|++.+|+.+|.+... .|...|+.+..+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 55666777777777777776664432 344667777788888888888888888888765 46668888888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHH
Q 044791 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFI 437 (623)
Q Consensus 358 ~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf 437 (623)
++++|..-|.+..+.... +...+|.|.-.+.-.|+.+.|..++...... -.-|..+-..|.-+....|++++|+.+.
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 888888888888775222 4466777777777788888888888877643 2225666677788888888888888887
Q ss_pred Hh
Q 044791 438 EQ 439 (623)
Q Consensus 438 ~~ 439 (623)
..
T Consensus 226 ~~ 227 (257)
T COG5010 226 VQ 227 (257)
T ss_pred cc
Confidence 76
No 113
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.92 E-value=0.00086 Score=69.14 Aligned_cols=197 Identities=14% Similarity=0.088 Sum_probs=121.1
Q ss_pred HHHHHHcCCHHHHHHHHHc--------CCCCC-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCCC--HHHHHH
Q 044791 253 LARLCQEGKVKEAIELMDK--------GVKAD-ASCFYTLFELCGNPKWYENAKKVHDYFLQS----TIRGD--LVLNNK 317 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~--------~~~pd-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~pd--~~~y~~ 317 (623)
...|...|++++|.+.|.+ +-..+ ...|.....+|.+. ++++|++++++.... |- ++ ..++..
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~-~~~aA~~~~~ 119 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGR-FSQAAKCLKE 119 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence 5578888999999988853 11111 13455655565554 888999888887653 31 22 456777
Q ss_pred HHHHHHHc-CCHHHHHHHHHHhhc----CCh-----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-----CCHH-HH
Q 044791 318 VIEMYGKC-GSMTDARRVFDHMAD----RSM-----DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ-----PNEQ-TF 381 (623)
Q Consensus 318 Li~~y~k~-g~~~~A~~lf~~m~~----~~~-----~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~-----Pd~~-ty 381 (623)
+...|-.. |++++|++.|++..+ .+. .++..+...+.+.|++++|+++|++....-+. .++. .|
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 88888888 899999999887653 121 26777888899999999999999988765332 2222 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhc-CCCCC--ccchhhHHHHHHh--cCCHHHHHHHHHhhCCCCCCHHHHHHH
Q 044791 382 LAVFSACGSADAIEEAFIHFESMKSEF-GISPG--TEHYLGLVGVLGK--CGHLFEAQQFIEQKLPFEPTAEFWEAL 453 (623)
Q Consensus 382 ~~li~a~~~~g~~e~A~~l~~~m~~~~-g~~p~--~~ty~~Li~~~~k--~g~~e~A~~lf~~~m~~~Pd~~ty~~L 453 (623)
...+-++...||...|.+.|++..... ++..+ ......||.+|-. ...+.+|+.-|+. +. +.|..--..|
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~-~~-~ld~w~~~~l 274 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDS-IS-RLDNWKTKML 274 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTT-SS----HHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcc-cC-ccHHHHHHHH
Confidence 344445666789999999998877321 12111 2334456666654 4568888888888 54 3344333333
No 114
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.89 E-value=0.00033 Score=64.53 Aligned_cols=122 Identities=13% Similarity=0.064 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCChH------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMADRSMD------SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE--QTFLAVF 385 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~------tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~--~ty~~li 385 (623)
.|..++..+ ..++..++...++.+.+.... ..-.+...+...|++++|...|++..+....++. .....|.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 344444444 255555555555555432111 2222334455666666666666666655422221 2233344
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 386 SACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 386 ~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
..+...|++++|+.+++.... -......+..+.++|.+.|+.++|...|++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPD---EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccC---cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 555566666666666644321 112233444555666666666666666654
No 115
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=0.00044 Score=77.09 Aligned_cols=286 Identities=15% Similarity=0.155 Sum_probs=176.9
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CC--------CCCHHHHHHHHHHHHHc
Q 044791 255 RLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQS-TI--------RGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 255 ~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-g~--------~pd~~~y~~Li~~y~k~ 325 (623)
.|...|+.|+|++-.+. .-+...|..|.+.|.+..++|-|.-.+..|... |. .++ .+-..+.-.....
T Consensus 737 fyvtiG~MD~AfksI~~--IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieL 813 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQF--IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIEL 813 (1416)
T ss_pred EEEEeccHHHHHHHHHH--HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHH
Confidence 36678999998876543 224467999999999999999888887777542 21 222 2223333444577
Q ss_pred CCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-
Q 044791 326 GSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESM- 404 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m- 404 (623)
|.+++|+.+|++-+. |..|=+.|-..|.+++|+++-+.=-...+ ..||..-...+...++++.|++.|+..
T Consensus 814 gMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 814 GMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred hhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 999999999998875 44556678889999999987665333222 246666666677788899999888742
Q ss_pred ---------Hhhc--------CCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 044791 405 ---------KSEF--------GISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLED 467 (623)
Q Consensus 405 ---------~~~~--------g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~ 467 (623)
..++ ...-|...|..-..-+-..|++|.|+.+|.. - .-|-++++..|-.|+.++|.
T Consensus 886 ~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~-A------~D~fs~VrI~C~qGk~~kAa 958 (1416)
T KOG3617|consen 886 VHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS-A------KDYFSMVRIKCIQGKTDKAA 958 (1416)
T ss_pred ChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH-h------hhhhhheeeEeeccCchHHH
Confidence 2211 1112333344444444457888888888887 2 24667888888889998666
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHH
Q 044791 468 HAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEA 547 (623)
Q Consensus 468 ~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~ 547 (623)
++.+.- -|......+-..|-..|++. +|+.+|.+-.. +...|. .+
T Consensus 959 ~iA~es-----------------gd~AAcYhlaR~YEn~g~v~--------~Av~FfTrAqa---------fsnAIR-lc 1003 (1416)
T KOG3617|consen 959 RIAEES-----------------GDKAACYHLARMYENDGDVV--------KAVKFFTRAQA---------FSNAIR-LC 1003 (1416)
T ss_pred HHHHhc-----------------ccHHHHHHHHHHhhhhHHHH--------HHHHHHHHHHH---------HHHHHH-HH
Confidence 555532 23445556667777778774 88888844321 111121 11
Q ss_pred HHH---------HHHHHHhHHHHHHhcccCCCCChhHHHhhHhhhcchhHHHHHH
Q 044791 548 KEQ---------ALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIM 593 (623)
Q Consensus 548 k~~---------~~~~~~g~l~~A~~ll~~m~~~~~~i~~~l~~~g~~~~a~~l~ 593 (623)
|+. .+......+.+|-.++++....-.+.+-.|.++|..+.|+++.
T Consensus 1004 KEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 1004 KENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred HhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHH
Confidence 111 1222334444555566655544344455566667766666543
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.84 E-value=0.0023 Score=63.33 Aligned_cols=157 Identities=14% Similarity=0.096 Sum_probs=125.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a 387 (623)
|..+ ..+-..+.-.|+-+.+..+...... .|....+.++....+.|++.+|+..|.+.... -.+|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHH
Confidence 4444 6677888888998888888877543 35556777999999999999999999999875 35588999999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCChhH
Q 044791 388 CGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-FEPTAEFWEALRNYARIHGDIDL 465 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-~~Pd~~ty~~Li~a~~~~g~~~~ 465 (623)
|-+.|+.++|..-|.+.. .+.+ +...+|.|.-.|.-.|+.+.|..++...-. -..|...-..|..+....|++++
T Consensus 144 ldq~Gr~~~Ar~ay~qAl---~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 144 LDQLGRFDEARRAYRQAL---ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHccChhHHHHHHHHHH---HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 999999999999998887 3444 456788888889999999999999998332 23377777888888889999997
Q ss_pred HHHHHHH
Q 044791 466 EDHAEEL 472 (623)
Q Consensus 466 A~~~~~~ 472 (623)
|+.+...
T Consensus 221 A~~i~~~ 227 (257)
T COG5010 221 AEDIAVQ 227 (257)
T ss_pred HHhhccc
Confidence 7766553
No 117
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.014 Score=59.84 Aligned_cols=208 Identities=12% Similarity=0.048 Sum_probs=131.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 044791 316 NKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGL-------GDEGLQLFEQMRKLGLQPNEQ-TFLAVFSA 387 (623)
Q Consensus 316 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~-------~eeA~~l~~eM~~~g~~Pd~~-ty~~li~a 387 (623)
-.|+--|.+.+++.+|..+.+++.-....-|-.-...++..|+ ..-|...|.-.-+.+..-|.+ ---++..+
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred hhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 3566778899999999998877754443333333333444443 445666665554555554443 23455556
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC-C-CCCHHHHHHHH-HHHHHcCChh
Q 044791 388 CGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-F-EPTAEFWEALR-NYARIHGDID 464 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-~-~Pd~~ty~~Li-~a~~~~g~~~ 464 (623)
+.-...+|+.+-.+..++.- =..-|...| .+..+++..|.+.+|+++|-+ +. - -.|..+|.+++ ++|.+.+..+
T Consensus 369 fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~-N~AQAk~atgny~eaEelf~~-is~~~ikn~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESY-FTNDDDFNL-NLAQAKLATGNYVEAEELFIR-ISGPEIKNKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCcchhhh-HHHHHHHHhcChHHHHHHHhh-hcChhhhhhHHHHHHHHHHHHhcCCch
Confidence 66667888888888887743 333344444 468899999999999999998 43 1 13566776655 5788899998
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHH-HHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeecc
Q 044791 465 LEDHAEELMVDLDPSKADPKKIPTPPPKKRTAI-SILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDI 543 (623)
Q Consensus 465 ~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~-~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li 543 (623)
-+|+.|..++..+. ..... .+-..|.+.+.| --|-+.|+++... -|+..-|..--
T Consensus 446 ---lAW~~~lk~~t~~e-----------~fsLLqlIAn~CYk~~eF--------yyaaKAFd~lE~l--DP~pEnWeGKR 501 (557)
T KOG3785|consen 446 ---LAWDMMLKTNTPSE-----------RFSLLQLIANDCYKANEF--------YYAAKAFDELEIL--DPTPENWEGKR 501 (557)
T ss_pred ---HHHHHHHhcCCchh-----------HHHHHHHHHHHHHHHHHH--------HHHHHhhhHHHcc--CCCccccCCcc
Confidence 67777777765432 22332 333457777776 2666667665543 47777777666
Q ss_pred CHHHHHH
Q 044791 544 DQEAKEQ 550 (623)
Q Consensus 544 ~~~~k~~ 550 (623)
++|+...
T Consensus 502 GACaG~f 508 (557)
T KOG3785|consen 502 GACAGLF 508 (557)
T ss_pred chHHHHH
Confidence 6555444
No 118
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.78 E-value=0.0026 Score=72.62 Aligned_cols=208 Identities=13% Similarity=0.065 Sum_probs=117.2
Q ss_pred HHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044791 257 CQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFD 336 (623)
Q Consensus 257 ~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~ 336 (623)
...+.+++|+.+|++ ...+..+.+.||.- .+.+|.|.++-++. . ...+|+-|..+=.+.|.+.+|++-|-
T Consensus 1059 i~~~LyEEAF~ifkk-f~~n~~A~~VLie~---i~~ldRA~efAe~~-----n-~p~vWsqlakAQL~~~~v~dAieSyi 1128 (1666)
T KOG0985|consen 1059 IENQLYEEAFAIFKK-FDMNVSAIQVLIEN---IGSLDRAYEFAERC-----N-EPAVWSQLAKAQLQGGLVKDAIESYI 1128 (1666)
T ss_pred hhhhHHHHHHHHHHH-hcccHHHHHHHHHH---hhhHHHHHHHHHhh-----C-ChHHHHHHHHHHHhcCchHHHHHHHH
Confidence 344455556555544 22333444444432 23455555544432 1 23456666666666666666666552
Q ss_pred HhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccc
Q 044791 337 HMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEH 416 (623)
Q Consensus 337 ~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~t 416 (623)
+..|...|.-+|....+.|.||+-.+.+...+++.-+|.+.+ .||-+|++.+++.+.++++ ..|+...
T Consensus 1129 --kadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi--------~gpN~A~ 1196 (1666)
T KOG0985|consen 1129 --KADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI--------AGPNVAN 1196 (1666)
T ss_pred --hcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh--------cCCCchh
Confidence 334555666666666666766666666665555555554433 4566666666665544333 1244444
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhH
Q 044791 417 YLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTA 496 (623)
Q Consensus 417 y~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~ 496 (623)
.-.+.+-|...|.++.|.-+|.. +..|..|...+...|++..|....++. -+..||
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~-------vSN~a~La~TLV~LgeyQ~AVD~aRKA-----------------ns~ktW 1252 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN-------VSNFAKLASTLVYLGEYQGAVDAARKA-----------------NSTKTW 1252 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHHHHhhhc-----------------cchhHH
Confidence 45555666666666666655554 345667777777778877555555443 224566
Q ss_pred HHHhhhcCcccccc
Q 044791 497 ISILDGKSRLVEFR 510 (623)
Q Consensus 497 ~~li~~~~~~~~~~ 510 (623)
.-+-.+|...++|+
T Consensus 1253 K~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1253 KEVCFACVDKEEFR 1266 (1666)
T ss_pred HHHHHHHhchhhhh
Confidence 66666777766664
No 119
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=0.0035 Score=67.53 Aligned_cols=132 Identities=17% Similarity=0.163 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchh
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFL-------AVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYL 418 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~-------~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~ 418 (623)
++....+|...|++.++..+-+..++.|-. ...-|+ .+..+|.+.++++.|...|.+.... ...|+..+-.
T Consensus 260 ~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte-~Rt~~~ls~l 337 (539)
T KOG0548|consen 260 LNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE-HRTPDLLSKL 337 (539)
T ss_pred HHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh-hcCHHHHHHH
Confidence 344444566666666666655555554422 111222 2334566677888888888877655 3333332111
Q ss_pred h-------------------------HHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHH
Q 044791 419 G-------------------------LVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEEL 472 (623)
Q Consensus 419 ~-------------------------Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~ 472 (623)
. =...+.+.|++.+|+..|.+++...| |...|.....+|.+.|.+..|.+-.+.
T Consensus 338 k~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~ 417 (539)
T KOG0548|consen 338 KEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKK 417 (539)
T ss_pred HHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 0 12346677899999999999666566 567888888899999999988888888
Q ss_pred HHhcCCC
Q 044791 473 MVDLDPS 479 (623)
Q Consensus 473 ~~~m~~~ 479 (623)
..++++.
T Consensus 418 ~ieL~p~ 424 (539)
T KOG0548|consen 418 CIELDPN 424 (539)
T ss_pred HHhcCch
Confidence 8887654
No 120
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.76 E-value=0.0046 Score=74.31 Aligned_cols=262 Identities=13% Similarity=-0.015 Sum_probs=165.9
Q ss_pred HHHHHcCCHHHHHHHHHcCCC--C--CH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHH
Q 044791 254 ARLCQEGKVKEAIELMDKGVK--A--DA----SCFYTLFELCGNPKWYENAKKVHDYFLQS----TI-RGDLVLNNKVIE 320 (623)
Q Consensus 254 ~~~~~~g~~~~A~~l~~~~~~--p--d~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~-~pd~~~y~~Li~ 320 (623)
..+...|++++|...+++.+. + +. .+.+.+..++...|++++|...+.+.... |- .....++..+..
T Consensus 460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 345578999999998865221 2 11 34566677788899999999999888753 21 111345566777
Q ss_pred HHHHcCCHHHHHHHHHHhhcC-------C----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCC--CHHHHHHHH
Q 044791 321 MYGKCGSMTDARRVFDHMADR-------S----MDSWHLMINGYADNGLGDEGLQLFEQMRKLG--LQP--NEQTFLAVF 385 (623)
Q Consensus 321 ~y~k~g~~~~A~~lf~~m~~~-------~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g--~~P--d~~ty~~li 385 (623)
.+...|++++|...+++.... + ...+..+...+...|++++|...+++..... ..+ ...++..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 888999999999998876431 1 1245556667788899999999999886531 112 234455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCCccchh-----hHHHHHHhcCCHHHHHHHHHhhCCCC-CCH----HHHHHHHH
Q 044791 386 SACGSADAIEEAFIHFESMKSEFGISPGTEHYL-----GLVGVLGKCGHLFEAQQFIEQKLPFE-PTA----EFWEALRN 455 (623)
Q Consensus 386 ~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~-----~Li~~~~k~g~~e~A~~lf~~~m~~~-Pd~----~ty~~Li~ 455 (623)
..+...|+.++|.+.++.+..-.........+. ..+..+...|+.++|.+++....... ... ..+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 677889999999999988764211111111111 12244456899999999998822211 111 12445666
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCc-hhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHC
Q 044791 456 YARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPK-KRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKES 530 (623)
Q Consensus 456 a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~-~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~ 530 (623)
++...|+.++|...++...+....... ..+ ..+...+-.++.+.|+. ++|...|.+..+.
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~-------~~~~a~~~~~la~a~~~~G~~--------~~A~~~L~~Al~l 760 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRL-------MSDLNRNLILLNQLYWQQGRK--------SEAQRVLLEALKL 760 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCc-------hHHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHH
Confidence 788999999998888887765322111 011 12333444456667765 5888887555443
No 121
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.75 E-value=0.0053 Score=67.35 Aligned_cols=263 Identities=14% Similarity=0.142 Sum_probs=153.9
Q ss_pred cccccc---cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCCC
Q 044791 199 NQWNNQ---QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKA 275 (623)
Q Consensus 199 ~~w~~~---~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~p 275 (623)
..|..- ..|+..+-+..|.+..+ ...|.+..- ..-..+..+...|-..|+++.|..+|+++.+.
T Consensus 350 ~eW~kRV~l~e~~~~~~i~tyteAv~-~vdP~ka~G------------s~~~Lw~~faklYe~~~~l~~aRvifeka~~V 416 (835)
T KOG2047|consen 350 EEWHKRVKLYEGNAAEQINTYTEAVK-TVDPKKAVG------------SPGTLWVEFAKLYENNGDLDDARVIFEKATKV 416 (835)
T ss_pred HHHHhhhhhhcCChHHHHHHHHHHHH-ccCcccCCC------------ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcC
Confidence 356533 67888888888887622 022221110 01123446677788899999999999987765
Q ss_pred CHHHHHHHHH-------HHhCCCCHHHHHHHHHHHHHcCCC-----------------CCHHHHHHHHHHHHHcCCHHHH
Q 044791 276 DASCFYTLFE-------LCGNPKWYENAKKVHDYFLQSTIR-----------------GDLVLNNKVIEMYGKCGSMTDA 331 (623)
Q Consensus 276 d~~ty~~Ll~-------~~~~~g~~~~A~~l~~~m~~~g~~-----------------pd~~~y~~Li~~y~k~g~~~~A 331 (623)
.-.+-+-|.. .=.+..+++.|++++++....--. .+..+|...++.--..|-++..
T Consensus 417 ~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfest 496 (835)
T KOG2047|consen 417 PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFEST 496 (835)
T ss_pred CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHH
Confidence 5444333333 334556788888888776532111 1234555566666677888888
Q ss_pred HHHHHHhhcCChHHHHHHHHH---HHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHH
Q 044791 332 RRVFDHMADRSMDSWHLMING---YADNGLGDEGLQLFEQMRKLGLQPNE-QTFLAVFSACGS---ADAIEEAFIHFESM 404 (623)
Q Consensus 332 ~~lf~~m~~~~~~tyn~Li~~---~~~~g~~eeA~~l~~eM~~~g~~Pd~-~ty~~li~a~~~---~g~~e~A~~l~~~m 404 (623)
..+|++|.+.-+.|=-++|+- +-.+.-+++++++|++-...---|++ ..|++.+.-+.+ ...+|.|..+|+..
T Consensus 497 k~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 497 KAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 888888876544432222221 33445578888888765544333444 245554444433 34789999999998
Q ss_pred HhhcCCCCCccchhhHHHHH--HhcCCHHHHHHHHHhhC-CCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 405 KSEFGISPGTEHYLGLVGVL--GKCGHLFEAQQFIEQKL-PFEPT--AEFWEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 405 ~~~~g~~p~~~ty~~Li~~~--~k~g~~e~A~~lf~~~m-~~~Pd--~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
.+ |+.|...-+--|+-+- -+.|....|+.+|+++- .+++. ...||..|.--+..=-+-.-.+++++..+.
T Consensus 577 L~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 577 LD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred Hh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 85 7776543322222221 23588888999998832 23332 257887777444333333344566655554
No 122
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.75 E-value=0.0057 Score=65.37 Aligned_cols=114 Identities=20% Similarity=0.137 Sum_probs=49.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-ccchhhHHHHHHhcCCHH
Q 044791 354 ADNGLGDEGLQLFEQMRKLGLQPNE-QTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TEHYLGLVGVLGKCGHLF 431 (623)
Q Consensus 354 ~~~g~~eeA~~l~~eM~~~g~~Pd~-~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~~~k~g~~e 431 (623)
...|++++|+..++.+... .||. +-.......+.+.++.++|.+.++.+. ...|+ ....-.+..+|.+.|+..
T Consensus 317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHHHHHHhcCChH
Confidence 3444455555555554433 2322 222233334444555555555555444 22333 223333444455555555
Q ss_pred HHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 044791 432 EAQQFIEQKLP-FEPTAEFWEALRNYARIHGDIDLEDHAEEL 472 (623)
Q Consensus 432 ~A~~lf~~~m~-~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~ 472 (623)
+|+.++++... ..-|...|..|..+|...|+..++..+..+
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 55555544222 122344555555555555554444444433
No 123
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.75 E-value=4.2e-05 Score=51.52 Aligned_cols=34 Identities=21% Similarity=0.233 Sum_probs=31.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCH
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDL 312 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 312 (623)
+||+||.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999998873
No 124
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=2.8e-05 Score=51.11 Aligned_cols=30 Identities=33% Similarity=0.761 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGL 374 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~ 374 (623)
+||+||++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 566666666666666666666666665553
No 125
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.69 E-value=0.012 Score=67.02 Aligned_cols=223 Identities=13% Similarity=0.072 Sum_probs=150.1
Q ss_pred ccccccCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHH--HHcCCHHHHHHHHHc--CCCC
Q 044791 200 QWNNQQNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARL--CQEGKVKEAIELMDK--GVKA 275 (623)
Q Consensus 200 ~w~~~~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~l~~~--~~~p 275 (623)
-|-++..+++.+|......+.+ ..|+ ..+...+.++ .|.|+.++|..+++. +..+
T Consensus 16 i~d~ld~~qfkkal~~~~kllk--k~Pn-------------------~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~ 74 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLK--KHPN-------------------ALYAKVLKALSLFRLGKGDEALKLLEALYGLKG 74 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHH--HCCC-------------------cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC
Confidence 4777788999999999998743 2233 2233455655 589999999999974 3333
Q ss_pred -CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHhhcCChHHHHHHH
Q 044791 276 -DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTD----ARRVFDHMADRSMDSWHLMI 350 (623)
Q Consensus 276 -d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~----A~~lf~~m~~~~~~tyn~Li 350 (623)
|..|...+-.+|.+.++.++|..+|++... .-|+......+..+|.|.+++.+ |++++....+.--.-|+++
T Consensus 75 ~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~- 151 (932)
T KOG2053|consen 75 TDDLTLQFLQNVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVI- 151 (932)
T ss_pred CchHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHH-
Confidence 778999999999999999999999999987 45677777788889999888764 6677765554444455543
Q ss_pred HHHHH-cCC---------hHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhh
Q 044791 351 NGYAD-NGL---------GDEGLQLFEQMRKLG-LQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLG 419 (623)
Q Consensus 351 ~~~~~-~g~---------~eeA~~l~~eM~~~g-~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~ 419 (623)
+.+.. ... ..-|.++++.+++.+ -.-+..-...-+..+-..|++++|++++..-..+.-..-+...-+.
T Consensus 152 Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~ 231 (932)
T KOG2053|consen 152 SLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENK 231 (932)
T ss_pred HHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHH
Confidence 33222 111 234566777777554 2222333333344556789999999999544333122334444456
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 044791 420 LVGVLGKCGHLFEAQQFIEQKLPFEPT 446 (623)
Q Consensus 420 Li~~~~k~g~~e~A~~lf~~~m~~~Pd 446 (623)
-++.+...+++.+..++-.+.+...+|
T Consensus 232 ~~dllk~l~~w~~l~~l~~~Ll~k~~D 258 (932)
T KOG2053|consen 232 KLDLLKLLNRWQELFELSSRLLEKGND 258 (932)
T ss_pred HHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence 678888999999988887774444455
No 126
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.68 E-value=0.0024 Score=69.43 Aligned_cols=288 Identities=14% Similarity=0.125 Sum_probs=170.7
Q ss_pred cCCChHHHHHHHHHhcCCCCCC-------CccCCc--cc--cccCCCCC-CCCchHHHHHHHHHHHcCCHHHHHHHHHcC
Q 044791 205 QNQGYPQARNSYQQVSPGHQIP-------NQLNNV--PN--NMNQCPAG-DQVLPPSVADLARLCQEGKVKEAIELMDKG 272 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p-------~~~~~~--~~--~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~~ 272 (623)
+.|+|++|.++|+.+.+..... +.+... .. +....+.. +.+...+.+.-..+...|++.+|++++++.
T Consensus 122 rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 122 RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 8999999999999884432211 000000 00 11111111 224445556677788999999999998531
Q ss_pred -----------------CCCCHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHH-
Q 044791 273 -----------------VKADASC-FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDL----VLNNKVIEMYGKCGSMT- 329 (623)
Q Consensus 273 -----------------~~pd~~t-y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~y~~Li~~y~k~g~~~- 329 (623)
+.-+..+ ---|..++-..|+.++|.++|...++.... |. +.-|+|+.+-....=++
T Consensus 202 ~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~ 280 (652)
T KOG2376|consen 202 LRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDG 280 (652)
T ss_pred HHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCch
Confidence 1111111 223455677889999999999999887543 43 44455543322111111
Q ss_pred HHHHHHHHhhcC---------------------------------------------ChHHHHHHHHHHH--HcCChHHH
Q 044791 330 DARRVFDHMADR---------------------------------------------SMDSWHLMINGYA--DNGLGDEG 362 (623)
Q Consensus 330 ~A~~lf~~m~~~---------------------------------------------~~~tyn~Li~~~~--~~g~~eeA 362 (623)
.++..|+..... -...+.+|+..+. +...+.+|
T Consensus 281 ~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka 360 (652)
T KOG2376|consen 281 DLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKA 360 (652)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhh
Confidence 122222211100 0113444444432 22346777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHhhcCCCCCccchhhHHHHHHhcCCHHHHH
Q 044791 363 LQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFE--------SMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQ 434 (623)
Q Consensus 363 ~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~--------~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~ 434 (623)
.+++...-+..-.-..+.-..++......|+++.|++++. .+.+- +..|. +..+++..|.+.++.+-|.
T Consensus 361 ~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P~--~V~aiv~l~~~~~~~~~a~ 437 (652)
T KOG2376|consen 361 IELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLPG--TVGAIVALYYKIKDNDSAS 437 (652)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccChh--HHHHHHHHHHhccCCccHH
Confidence 7777777655333234455566667788999999999998 44422 44454 4456888888888877677
Q ss_pred HHHHhhCC-------CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCcc
Q 044791 435 QFIEQKLP-------FEPT-AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRL 506 (623)
Q Consensus 435 ~lf~~~m~-------~~Pd-~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~ 506 (623)
.+++++++ ..+. ..++.-+...-.++|..++|...++.+.+..+ +|..+...++.++++.
T Consensus 438 ~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~------------~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 438 AVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNP------------NDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCC------------chHHHHHHHHHHHHhc
Confidence 77666432 2222 14455555556678999999999998888654 4566888999999888
Q ss_pred cc
Q 044791 507 VE 508 (623)
Q Consensus 507 ~~ 508 (623)
.-
T Consensus 506 d~ 507 (652)
T KOG2376|consen 506 DP 507 (652)
T ss_pred CH
Confidence 74
No 127
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.67 E-value=0.00098 Score=60.10 Aligned_cols=92 Identities=10% Similarity=0.057 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG 389 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~ 389 (623)
.....+...+.+.|++++|.+.|+.+... +...|..+...+.+.|++++|..+|++..+.+ ..+..++..+...+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 33444445555555555555555544331 22344455555555555555555555544432 112334444444455
Q ss_pred hcCCHHHHHHHHHHHH
Q 044791 390 SADAIEEAFIHFESMK 405 (623)
Q Consensus 390 ~~g~~e~A~~l~~~m~ 405 (623)
..|+.++|...|+...
T Consensus 97 ~~g~~~~A~~~~~~al 112 (135)
T TIGR02552 97 ALGEPESALKALDLAI 112 (135)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555554444
No 128
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.67 E-value=6.9e-05 Score=50.38 Aligned_cols=33 Identities=12% Similarity=0.253 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRG 310 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p 310 (623)
.+|+++|.+|++.|+++.|.++|++|++.|+.|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578899999999999999999999998888876
No 129
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.64 E-value=0.013 Score=59.90 Aligned_cols=225 Identities=13% Similarity=0.070 Sum_probs=165.0
Q ss_pred HHHHHcCCHHHHHHHHHcCC--CC--------------CHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 044791 254 ARLCQEGKVKEAIELMDKGV--KA--------------DASC--FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLN 315 (623)
Q Consensus 254 ~~~~~~g~~~~A~~l~~~~~--~p--------------d~~t--y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y 315 (623)
..+.+.|.++.|..=|+.-+ .| -... ....+..+.-.|+...|+++...+++.. .-|+..|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHH
Confidence 45778999999998885311 11 1111 2234556677899999999999999974 4489999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhh---cCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH----H-----
Q 044791 316 NKVIEMYGKCGSMTDARRVFDHMA---DRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFL----A----- 383 (623)
Q Consensus 316 ~~Li~~y~k~g~~~~A~~lf~~m~---~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~----~----- 383 (623)
-.-..+|...|++.+|+.=++... ..+..++--+-..+...|+.+.++...++.++. .||....- .
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHH
Confidence 999999999999999998776554 346667777778888999999999999998874 67653221 1
Q ss_pred --H--HHHHHhcCCHHHHHHHHHHHHhhcCCCC---CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHH
Q 044791 384 --V--FSACGSADAIEEAFIHFESMKSEFGISP---GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-AEFWEALRN 455 (623)
Q Consensus 384 --l--i~a~~~~g~~e~A~~l~~~m~~~~g~~p---~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-~~ty~~Li~ 455 (623)
| +....+.+++.++++..+...+. .-.. ....+..+-.+|...|.+.+|+....+++.+.|| +.++.--..
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~-ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKN-EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHH
Confidence 1 12234556777777777766643 2111 2234445666777889999999999997888886 778888888
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCCCC
Q 044791 456 YARIHGDIDLEDHAEELMVDLDPSKAD 482 (623)
Q Consensus 456 a~~~~g~~~~A~~~~~~~~~m~~~~~~ 482 (623)
+|....++|.|+.-++...+.++++..
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 999899999999999999998877643
No 130
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.62 E-value=0.012 Score=65.96 Aligned_cols=134 Identities=18% Similarity=0.209 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-ccchhhHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TEHYLGLVGV 423 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~ 423 (623)
.|......+.+.+..++|...+.|..... .-....|......+...|.+++|.+.|.... -+.|+ +.+..+|..+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~ 727 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHH
Confidence 45566677888888899988888877642 3355666666677788899999999998776 67774 6678889999
Q ss_pred HHhcCCHHHHHH--HHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCC
Q 044791 424 LGKCGHLFEAQQ--FIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKAD 482 (623)
Q Consensus 424 ~~k~g~~e~A~~--lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~ 482 (623)
+.+.|+-.-|.. ++..++++.| +-..|-.|...+.+.|+.+.|-+.+....+++....+
T Consensus 728 lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999998777776 8888778777 4579999999999999999999999999999887654
No 131
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.61 E-value=0.04 Score=60.72 Aligned_cols=292 Identities=14% Similarity=0.167 Sum_probs=156.3
Q ss_pred HHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHcCCHH
Q 044791 256 LCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQS------TIRGDLVLNNKVIEMYGKCGSMT 329 (623)
Q Consensus 256 ~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~------g~~pd~~~y~~Li~~y~k~g~~~ 329 (623)
....|..+-++.+|++=++.++..-+.-|..+++.+++++|.+.+...+.. ..+.+...|.-|-+..++.-+.-
T Consensus 148 v~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~ 227 (835)
T KOG2047|consen 148 VESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKV 227 (835)
T ss_pred HHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchh
Confidence 334455556666666544444444555566666666666666666554421 11234444554444444432221
Q ss_pred ---HHHHHHHHhhcC--ChH--HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------
Q 044791 330 ---DARRVFDHMADR--SMD--SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA----------- 391 (623)
Q Consensus 330 ---~A~~lf~~m~~~--~~~--tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~----------- 391 (623)
...++++.+..+ |-. .|++|.+-|.+.|.+|+|..+|++.... ..++.-|+.+.++|+.-
T Consensus 228 ~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~ 305 (835)
T KOG2047|consen 228 QSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMEL 305 (835)
T ss_pred cccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 122333333332 222 7999999999999999999999998765 23444455555555421
Q ss_pred -----C------CHHHHHHHHHHHHhhcCCC---------C-CccchhhHHHHHHhcCCHHHHHHHHHhhCC-CCCC---
Q 044791 392 -----D------AIEEAFIHFESMKSEFGIS---------P-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-FEPT--- 446 (623)
Q Consensus 392 -----g------~~e~A~~l~~~m~~~~g~~---------p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-~~Pd--- 446 (623)
| +++-.+.-|+.+.....+- | ++..|..-+ -+..|+..+-...|.+++. +.|-
T Consensus 306 a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~vdP~ka~ 383 (835)
T KOG2047|consen 306 ADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKTVDPKKAV 383 (835)
T ss_pred hhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHccCcccCC
Confidence 1 2333444455554332211 1 122222211 2224667777777777442 3442
Q ss_pred ---HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHH
Q 044791 447 ---AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKA 523 (623)
Q Consensus 447 ---~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~ 523 (623)
...|..+.+.|-.+|+++.|..+++......-..+. --..+|+.+-+.-.+...| +.|++
T Consensus 384 Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~--------dLa~vw~~waemElrh~~~--------~~Al~- 446 (835)
T KOG2047|consen 384 GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE--------DLAEVWCAWAEMELRHENF--------EAALK- 446 (835)
T ss_pred CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH--------HHHHHHHHHHHHHHhhhhH--------HHHHH-
Confidence 257888999999999999999999988775433321 1123444444444444444 45555
Q ss_pred HHHHHHCCcccCcce---eeeccCHH---HHHHHHHHHHhHHHHHHhcccCCC
Q 044791 524 LNQMKESTYVPDTRY---VLHDIDQE---AKEQALLYHSERLAIAYGLISTPA 570 (623)
Q Consensus 524 ~~~M~~~Gi~Pd~~t---~~~li~~~---~k~~~~~~~~g~l~~A~~ll~~m~ 570 (623)
-|.++-..|.... |...-..- .+..-+....-.++|+++.|++..
T Consensus 447 --lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk 497 (835)
T KOG2047|consen 447 --LMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTK 497 (835)
T ss_pred --HHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHH
Confidence 4666666676632 33222111 111122334445666666665543
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.60 E-value=0.0015 Score=58.97 Aligned_cols=91 Identities=10% Similarity=0.013 Sum_probs=49.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHc
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADN 356 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~ 356 (623)
...+...+...|++++|.+.++.+...+ ..+...+..+..+|.+.|++++|..+|+...+. +...|..+...|...
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc
Confidence 4444455555566666666665555543 224555555555666666666666666555332 233455555556666
Q ss_pred CChHHHHHHHHHHHH
Q 044791 357 GLGDEGLQLFEQMRK 371 (623)
Q Consensus 357 g~~eeA~~l~~eM~~ 371 (623)
|++++|+..|++.++
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666655555
No 133
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.58 E-value=0.0067 Score=70.87 Aligned_cols=81 Identities=12% Similarity=0.103 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNG 357 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g 357 (623)
.++-.|..+|.+.|+.++|..+|+++++.. .-|+.+.|.+...|+.. ++++|++++.+.... |...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-----------~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-----------FIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-----------HHhhh
Confidence 345556666666677777777777776654 23566666666666666 677776666655432 44444
Q ss_pred ChHHHHHHHHHHHH
Q 044791 358 LGDEGLQLFEQMRK 371 (623)
Q Consensus 358 ~~eeA~~l~~eM~~ 371 (623)
++.++.++|.++.+
T Consensus 184 q~~~~~e~W~k~~~ 197 (906)
T PRK14720 184 QYVGIEEIWSKLVH 197 (906)
T ss_pred cchHHHHHHHHHHh
Confidence 55555555555554
No 134
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.57 E-value=0.0044 Score=57.01 Aligned_cols=123 Identities=8% Similarity=0.009 Sum_probs=82.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC--h----HHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD---LVLNNKVIEMYGKCGSMTDARRVFDHMADRS--M----DSWHL 348 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~--~----~tyn~ 348 (623)
..|..++..+. .++...+.+.++.+.+..- .+ ....-.+...+...|++++|...|+.+.... . ...-.
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~-~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYP-SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 34666666664 7778888888888877532 22 2223335577778888888888888876532 2 14445
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044791 349 MINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESM 404 (623)
Q Consensus 349 Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m 404 (623)
|...+...|++++|+.+++...... .....+....+.|...|+.++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 6677888888888888886643322 23445666777888888888888888653
No 135
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.0094 Score=68.27 Aligned_cols=247 Identities=16% Similarity=0.132 Sum_probs=159.0
Q ss_pred cCCChHHHHHHHHHhcCCCCCCC-c------cCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCCCCH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPN-Q------LNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKADA 277 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~-~------~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~pd~ 277 (623)
.++-|++|..+|+........-. . ++...+....| ....+|..+..+-.+.|.+.+|++-|-++- |+
T Consensus 1060 ~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~----n~p~vWsqlakAQL~~~~v~dAieSyikad--Dp 1133 (1666)
T KOG0985|consen 1060 ENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERC----NEPAVWSQLAKAQLQGGLVKDAIESYIKAD--DP 1133 (1666)
T ss_pred hhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhh----CChHHHHHHHHHHHhcCchHHHHHHHHhcC--Cc
Confidence 67889999999986622111000 0 00111111111 134566677788888999999998886543 55
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH-------------
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD------------- 344 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~------------- 344 (623)
..|..+++++.+.|.+++-.+++...++..-.|.+. +.||-+|++.+++.+-++++ ..+++.
T Consensus 1134 s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~ 1208 (1666)
T KOG0985|consen 1134 SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI---AGPNVANIQQVGDRCFEEK 1208 (1666)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh---cCCCchhHHHHhHHHhhhh
Confidence 689999999999999999999998888876666654 47999999999988876653 223333
Q ss_pred -------------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 044791 345 -------------SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGIS 411 (623)
Q Consensus 345 -------------tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~ 411 (623)
-|.-|...++..|++..|...-++. -+..||--+-.+|...+.+..| .|. ..++.
T Consensus 1209 ~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiC-GL~ii 1276 (1666)
T KOG0985|consen 1209 MYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QIC-GLNII 1276 (1666)
T ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH-----Hhc-CceEE
Confidence 4455555555555555555433332 2456777777777666655433 233 11222
Q ss_pred CCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 412 PGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 412 p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
....-..-||.-|-..|.++|.+.+++..++++. ..-.|+-|.-.|.+- +.++..+-++++..
T Consensus 1277 vhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFws 1340 (1666)
T KOG0985|consen 1277 VHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWS 1340 (1666)
T ss_pred EehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Confidence 3344456788999999999999999999777554 455677777677654 45544555555543
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.54 E-value=0.0036 Score=67.09 Aligned_cols=122 Identities=13% Similarity=0.165 Sum_probs=99.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYA 354 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~ 354 (623)
.....|+..+...++++.|+++|+++.+.. |++ ...|+..+...++-.+|++++++..+. +......-...|.
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 445567778888899999999999998864 554 445788888888889999999888753 4556666677789
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 355 DNGLGDEGLQLFEQMRKLGLQPNE-QTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~g~~Pd~-~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
+.++++.|+.+.+++.+. .|+. .+|..|..+|...|+++.|+..++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999985 6665 599999999999999999999988776
No 137
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.52 E-value=0.02 Score=56.55 Aligned_cols=180 Identities=14% Similarity=0.170 Sum_probs=126.6
Q ss_pred CCHHHHHHHHH-------cC-CCCCHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCCHH
Q 044791 260 GKVKEAIELMD-------KG-VKADAS-CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKV-IEMYGKCGSMT 329 (623)
Q Consensus 260 g~~~~A~~l~~-------~~-~~pd~~-ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~L-i~~y~k~g~~~ 329 (623)
.+.++.++++. .| ..++.. .|--++-+....|+.+.|..+++++... + |...-...| .-.+--.|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchh
Confidence 44555555552 24 556654 3666777777888899999999998776 3 332222222 22234468899
Q ss_pred HHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 330 DARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 330 ~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
+|+++|+.+.+. |.++|---+...-..|+--+|++-+.+..+. +.-|...|.-+-..|...|++++|.-.+++|.
T Consensus 104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l- 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL- 181 (289)
T ss_pred hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH-
Confidence 999999988865 4456777777777788888998888888876 56688999999999999999999999999988
Q ss_pred hcCCCC-CccchhhHHHHHHhcC---CHHHHHHHHHhhCCCCC
Q 044791 407 EFGISP-GTEHYLGLVGVLGKCG---HLFEAQQFIEQKLPFEP 445 (623)
Q Consensus 407 ~~g~~p-~~~ty~~Li~~~~k~g---~~e~A~~lf~~~m~~~P 445 (623)
-+.| +...+..+.+.+.-.| +++-|.++|.+++++.|
T Consensus 182 --l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 --LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred --HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 4455 3444455555554433 56778888888777666
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.51 E-value=0.0077 Score=64.43 Aligned_cols=139 Identities=12% Similarity=-0.006 Sum_probs=109.8
Q ss_pred HHHcCCHHHHHHHHHHhhc--C-ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 044791 322 YGKCGSMTDARRVFDHMAD--R-SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN-EQTFLAVFSACGSADAIEEA 397 (623)
Q Consensus 322 y~k~g~~~~A~~lf~~m~~--~-~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd-~~ty~~li~a~~~~g~~e~A 397 (623)
+...|.+++|+..++.+.. + |+.-+......+.+.++.++|.+.|++++.. .|+ .....++..+|.+.|+..+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3456788888888888764 3 4556666778899999999999999999985 566 45666778889999999999
Q ss_pred HHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 398 FIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 398 ~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
..++++... ...-|...|..|..+|...|+..+|..-.-+ +|...|+++.|...+....+..
T Consensus 394 i~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE----------------~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 394 IRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAE----------------GYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHH----------------HHHhCCCHHHHHHHHHHHHHhc
Confidence 999998874 4555788999999999999999999877776 4556889988877777776654
Q ss_pred CCC
Q 044791 478 PSK 480 (623)
Q Consensus 478 ~~~ 480 (623)
..+
T Consensus 456 ~~~ 458 (484)
T COG4783 456 KLG 458 (484)
T ss_pred cCC
Confidence 443
No 139
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.49 E-value=0.0012 Score=53.53 Aligned_cols=88 Identities=24% Similarity=0.206 Sum_probs=34.3
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcC
Q 044791 349 MINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCG 428 (623)
Q Consensus 349 Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g 428 (623)
+...+...|++++|+.+|+++.+... .+...+..+...+...|++++|.++|+..... ...+..++..+..++...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHHHH
Confidence 33344444444444444444443211 11233333444444444444444444443321 0111123333444444444
Q ss_pred CHHHHHHHHHh
Q 044791 429 HLFEAQQFIEQ 439 (623)
Q Consensus 429 ~~e~A~~lf~~ 439 (623)
+.++|..++++
T Consensus 83 ~~~~a~~~~~~ 93 (100)
T cd00189 83 KYEEALEAYEK 93 (100)
T ss_pred hHHHHHHHHHH
Confidence 44444444444
No 140
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.48 E-value=0.00079 Score=58.15 Aligned_cols=81 Identities=17% Similarity=0.264 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhhcCCCCCcc
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGL-QPNEQTFLAVFSACGSAD--------AIEEAFIHFESMKSEFGISPGTE 415 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~-~Pd~~ty~~li~a~~~~g--------~~e~A~~l~~~m~~~~g~~p~~~ 415 (623)
|-...|..|...+++.+...+|+.+++.|+ .|+..+|+.++.+.++.. ++-.++.+|..|... +++|+..
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 556677888888999999999999999999 899999999999877642 244567888999876 8999999
Q ss_pred chhhHHHHHHh
Q 044791 416 HYLGLVGVLGK 426 (623)
Q Consensus 416 ty~~Li~~~~k 426 (623)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 141
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.015 Score=57.41 Aligned_cols=187 Identities=15% Similarity=0.164 Sum_probs=137.3
Q ss_pred CCCHHHHHHHHHHHHH---cC-CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHH-H--HHHHcCChHH
Q 044791 290 PKWYENAKKVHDYFLQ---ST-IRGDL-VLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMI-N--GYADNGLGDE 361 (623)
Q Consensus 290 ~g~~~~A~~l~~~m~~---~g-~~pd~-~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li-~--~~~~~g~~ee 361 (623)
..+.++..+++.+|+. .| ..++. .+|.-++-+...+|+.+.|..+++.+..+=.-++..+. . -+-..|.+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 4567888888888764 34 55554 56677778888899999999999988754333333221 1 1445789999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhC
Q 044791 362 GLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKL 441 (623)
Q Consensus 362 A~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m 441 (623)
|+++|+..++.. .-|.++|--=+...-..|+--+|++-+....+ .+.-|...|.-|.+.|...|++++|.-++++++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 999999999876 44677887777777778888899988888875 466688999999999999999999999999965
Q ss_pred CCCCCHH-HHHHHHHHHHHcC---ChhHHHHHHHHHHhcCCC
Q 044791 442 PFEPTAE-FWEALRNYARIHG---DIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 442 ~~~Pd~~-ty~~Li~a~~~~g---~~~~A~~~~~~~~~m~~~ 479 (623)
-+.|... .+..+...+.-.| +++.+.+.++...++.+.
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 5678554 4444555444333 466677777777776553
No 142
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.44 E-value=0.0047 Score=61.20 Aligned_cols=150 Identities=13% Similarity=0.058 Sum_probs=89.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH-HHHHHHHHHHH----
Q 044791 281 YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD-SWHLMINGYAD---- 355 (623)
Q Consensus 281 ~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~-tyn~Li~~~~~---- 355 (623)
..-...|++.|++++|++..... - +..+...=+..+.|..++|-|...++.|.+-|.. +.+-|..++.+
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhcc
Confidence 33344667777777777776551 1 2333333345556667777777777777765443 55545555444
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHH-HH
Q 044791 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFE-AQ 434 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~-A~ 434 (623)
.+++.+|+-+|++|-++ ..|+..+.+-+..++...|++++|..++++...+..- +..+...+|..-...|+-.+ ..
T Consensus 186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~--dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK--DPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHhCCChHHHH
Confidence 34577777777777654 5677777777777777777788887777777754222 23344444444444454433 33
Q ss_pred HHHHh
Q 044791 435 QFIEQ 439 (623)
Q Consensus 435 ~lf~~ 439 (623)
+.+..
T Consensus 263 r~l~Q 267 (299)
T KOG3081|consen 263 RNLSQ 267 (299)
T ss_pred HHHHH
Confidence 34444
No 143
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.43 E-value=0.00014 Score=47.64 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=14.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQST 307 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g 307 (623)
+|++||++|++.|++++|.++|++|++.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44555555555555555555555554443
No 144
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.39 E-value=0.043 Score=61.69 Aligned_cols=187 Identities=12% Similarity=0.068 Sum_probs=112.0
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCC--C-CHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVK--A-DASC 279 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~--p-d~~t 279 (623)
+.|+|..+.+.|++...+- +.. ...+..+-..|...|.-..|+.++++ ... | |...
T Consensus 335 ~~g~f~~lae~fE~~~~~~-----~~~--------------~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 335 RCGQFEVLAEQFEQALPFS-----FGE--------------HERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HHHHHHHHHHHHHHHhHhh-----hhh--------------HHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 8899999999999773311 111 12344555667777777788888765 333 3 2333
Q ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHc--CCC--CCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHhhcCCh
Q 044791 280 FYTLFELCGN-PKWYENAKKVHDYFLQS--TIR--GDLVLNNKVIEMYGKC-----------GSMTDARRVFDHMADRSM 343 (623)
Q Consensus 280 y~~Ll~~~~~-~g~~~~A~~l~~~m~~~--g~~--pd~~~y~~Li~~y~k~-----------g~~~~A~~lf~~m~~~~~ 343 (623)
+-..-+.|.+ .+.+++++++-.+.++. |.. .....|-.+.-+|... ....+++..+++..+.|.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~ 475 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP 475 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 4444444433 46777777776666652 211 2345555565555432 123456666666654333
Q ss_pred HHHHH---HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 044791 344 DSWHL---MINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGI 410 (623)
Q Consensus 344 ~tyn~---Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~ 410 (623)
.-++. +.--|+..++++.|++...+..+.+-.-+...|..|...+...+++.+|+.+.+....++|.
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~ 545 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD 545 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 22222 22335666778888888888877765667777777777777778888888777776665543
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.37 E-value=0.0021 Score=52.07 Aligned_cols=58 Identities=21% Similarity=0.232 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESM 404 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m 404 (623)
+..+...+...|++++|+++|++...... .+..++..+...+...|+.++|...+...
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33344444444444444444444443221 12233344444444444444444444443
No 146
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.37 E-value=0.0041 Score=58.97 Aligned_cols=88 Identities=15% Similarity=0.054 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--C----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 044791 312 LVLNNKVIEMYGKCGSMTDARRVFDHMADR--S----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAV 384 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~--~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~l 384 (623)
...|..+...|...|++++|+..|++..+. + ...|..+...+.+.|++++|+..|++..+. .| +...+..+
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 112 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNI 112 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHH
Confidence 445666666666777777777777766531 1 235666666677777777777777666654 23 33445555
Q ss_pred HHHHHhcCCHHHHHHHH
Q 044791 385 FSACGSADAIEEAFIHF 401 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~ 401 (623)
..++...|+...+..-+
T Consensus 113 g~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHHcCChHhHhhCH
Confidence 55566666555444333
No 147
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.36 E-value=0.0048 Score=63.57 Aligned_cols=193 Identities=13% Similarity=0.154 Sum_probs=108.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----CC-----hHH
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQS----TIRG-DLVLNNKVIEMYGKCGSMTDARRVFDHMAD----RS-----MDS 345 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~----~~-----~~t 345 (623)
|.-....|-..|++++|.+.|.+.... |-.. -...|.....+|.+. ++++|++.|++..+ .+ ...
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~ 116 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 444455556666666666666554332 1100 123444444444443 66666666665542 11 115
Q ss_pred HHHHHHHHHHc-CChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-----c
Q 044791 346 WHLMINGYADN-GLGDEGLQLFEQMRKL----GLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-----T 414 (623)
Q Consensus 346 yn~Li~~~~~~-g~~eeA~~l~~eM~~~----g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-----~ 414 (623)
+..+...|-.. |++++|+++|++..+. |-.- -..++..+...+.+.|++++|.++|+++... -+.-+ +
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~~ 195 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK-CLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-CCCHCTTGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-hhcccccchhH
Confidence 66666777777 8999999999987643 2111 1245667778899999999999999998754 22211 1
Q ss_pred c-chhhHHHHHHhcCCHHHHHHHHHhhCCCCCC------HHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 415 E-HYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT------AEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 415 ~-ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd------~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
. .|-..+-++...|+...|.+.|++.+...|. ......||.+| +.||.+....++..+..
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcc
Confidence 1 2233344566679999999999984444331 24455566665 46666655555555544
No 148
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.35 E-value=0.0021 Score=69.25 Aligned_cols=118 Identities=9% Similarity=0.030 Sum_probs=57.2
Q ss_pred CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----CChHHH
Q 044791 273 VKADASCFYTLFELCGNPKWYENAKKVHDYFLQS--TIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD----RSMDSW 346 (623)
Q Consensus 273 ~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~----~~~~ty 346 (623)
...+......+++.+....+++++..++-+.+.. ....-..|..++|+.|.+.|..++|+++++.=.. +|-.+|
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3344445555555555555555555555554443 1111122334555555555555555555543322 233455
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044791 347 HLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS 390 (623)
Q Consensus 347 n~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~ 390 (623)
|.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 55555555555555555555555544444444555444444443
No 149
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.32 E-value=0.00096 Score=68.69 Aligned_cols=25 Identities=16% Similarity=0.392 Sum_probs=8.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 044791 450 WEALRNYARIHGDIDLEDHAEELMV 474 (623)
Q Consensus 450 y~~Li~a~~~~g~~~~A~~~~~~~~ 474 (623)
|...+..=.+.|+++.+.++.+++.
T Consensus 110 w~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 110 WKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp HHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.32 E-value=0.0022 Score=55.93 Aligned_cols=94 Identities=16% Similarity=0.066 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQ--PNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVG 422 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~--Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~ 422 (623)
+..++..+.+.|++++|...|+++....-. .....+..+..++.+.|++++|..+|+.+.....-.+ ....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 333444444555555555555555433110 0122333444445555555555555555443211111 1223334444
Q ss_pred HHHhcCCHHHHHHHHHh
Q 044791 423 VLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 423 ~~~k~g~~e~A~~lf~~ 439 (623)
++.+.|+.++|..++++
T Consensus 85 ~~~~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQ 101 (119)
T ss_pred HHHHhCChHHHHHHHHH
Confidence 44555555555555554
No 151
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.32 E-value=0.004 Score=64.13 Aligned_cols=142 Identities=15% Similarity=0.180 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHH---HH-HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMI---NG-YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSAC 388 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li---~~-~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~ 388 (623)
.+|-.+|+..-+.+.+++|+.+|.+..+.+..+|.+.+ .. |...++.+.|..+|+..++. +.-+...|..-|+.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 57889999999999999999999999875544443333 23 33356677799999999976 555777788889999
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 044791 389 GSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRN 455 (623)
Q Consensus 389 ~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~ 455 (623)
.+.|+.+.|..+|++......... ....|...|+.=.+.|+++.+..+.+++....|+......+++
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~ 148 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFSD 148 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 999999999999999985422222 2348888888888999999999999984444455333333333
No 152
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.31 E-value=0.0027 Score=61.38 Aligned_cols=118 Identities=16% Similarity=0.224 Sum_probs=88.2
Q ss_pred CCCCHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHH
Q 044791 273 VKADASCFYTLFELCGN-----PKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWH 347 (623)
Q Consensus 273 ~~pd~~ty~~Ll~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn 347 (623)
-..|-.+|..+++.+.+ .|.++-....+..|.+-|+..|..+|+.||+.+=+ |.+- -..+|+.|-
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F-------- 112 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF-------- 112 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh--------
Confidence 45677889988888864 48899999999999999999999999999999876 3332 223333221
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 044791 348 LMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADA-IEEAFIHFESMK 405 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~-~e~A~~l~~~m~ 405 (623)
.-| -.+-+-|++++++|+..|+.||..|+..|+..+++.+. +.+..++.-.|-
T Consensus 113 ---~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp 166 (228)
T PF06239_consen 113 ---MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP 166 (228)
T ss_pred ---ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 111 12457899999999999999999999999999987664 334444444444
No 153
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.31 E-value=0.0014 Score=63.28 Aligned_cols=97 Identities=15% Similarity=0.308 Sum_probs=75.1
Q ss_pred HHHHHHh--hcCChHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-------------
Q 044791 332 RRVFDHM--ADRSMDSWHLMINGYADN-----GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA------------- 391 (623)
Q Consensus 332 ~~lf~~m--~~~~~~tyn~Li~~~~~~-----g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~------------- 391 (623)
.++|+.. ..++-.+|..+|..|.+. |.+|-....+..|.+-|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4556655 456777888888887654 66788888899999999999999999999887642
Q ss_pred ---CCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCC
Q 044791 392 ---DAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGH 429 (623)
Q Consensus 392 ---g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~ 429 (623)
.+.+-|++++++|+.. |+.||.+++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccH
Confidence 1236788888888855 888888888888888877654
No 154
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=0.0053 Score=62.90 Aligned_cols=193 Identities=13% Similarity=0.123 Sum_probs=102.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHHH-------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADASC-------FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDL-VLNNKVIEMY 322 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~t-------y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~~y~~Li~~y 322 (623)
+|+--|.+.+++.+|..+.++--.-++.- +..+..-......+.-|...|...-+.+..-|. ----++..++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 55666778888888888876522222222 222222223333455566666554444444332 1123344555
Q ss_pred HHcCCHHHHHHHHHHhhc----CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCHHHH
Q 044791 323 GKCGSMTDARRVFDHMAD----RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVF-SACGSADAIEEA 397 (623)
Q Consensus 323 ~k~g~~~~A~~lf~~m~~----~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li-~a~~~~g~~e~A 397 (623)
.-...+|+++-.++.++. .|+..|| +..+++..|.+.+|+++|-......++ |..+|-+++ ++|.+.++.+.|
T Consensus 370 FL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHH
Confidence 555567777777666653 2333333 456677777777777777655433333 445554443 455667777777
Q ss_pred HHHHHHHHhhcCCCCCccchh-hHHHHHHhcCCHHHHHHHHHhhCC-CCCCHHHH
Q 044791 398 FIHFESMKSEFGISPGTEHYL-GLVGVLGKCGHLFEAQQFIEQKLP-FEPTAEFW 450 (623)
Q Consensus 398 ~~l~~~m~~~~g~~p~~~ty~-~Li~~~~k~g~~e~A~~lf~~~m~-~~Pd~~ty 450 (623)
++++-.+.. .-+..+.- .+..-|.+++.+--|.+.|+. ++ ..|+..-|
T Consensus 448 W~~~lk~~t----~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~-lE~lDP~pEnW 497 (557)
T KOG3785|consen 448 WDMMLKTNT----PSERFSLLQLIANDCYKANEFYYAAKAFDE-LEILDPTPENW 497 (557)
T ss_pred HHHHHhcCC----chhHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHccCCCcccc
Confidence 766644431 11222222 223445566766666666666 43 44555444
No 155
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.25 E-value=0.0056 Score=68.31 Aligned_cols=141 Identities=9% Similarity=-0.033 Sum_probs=81.8
Q ss_pred CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHhhcCChH---HHHHHHHHHHHc--------CChHHHHHHHHHHHH
Q 044791 308 IRGDLVLNNKVIEMYGKCG-----SMTDARRVFDHMADRSMD---SWHLMINGYADN--------GLGDEGLQLFEQMRK 371 (623)
Q Consensus 308 ~~pd~~~y~~Li~~y~k~g-----~~~~A~~lf~~m~~~~~~---tyn~Li~~~~~~--------g~~eeA~~l~~eM~~ 371 (623)
...|...|...+.+..... ..++|+.+|++..+.|.. .|..+..++... +++.++.+..++...
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4456677777766654322 256777777777653322 333333332221 112333333333333
Q ss_pred cC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHH
Q 044791 372 LG-LQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFW 450 (623)
Q Consensus 372 ~g-~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty 450 (623)
.. ...+..+|..+...+...|++++|...+++.. .+.|+...|..+...|...|+.++|.+.|++++.+.|...||
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl---~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~ 489 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAI---DLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL 489 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence 21 22344566666555556678888888887777 344667777777777777888888888887777766765554
Q ss_pred H
Q 044791 451 E 451 (623)
Q Consensus 451 ~ 451 (623)
.
T Consensus 490 ~ 490 (517)
T PRK10153 490 Y 490 (517)
T ss_pred H
Confidence 3
No 156
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=0.009 Score=60.01 Aligned_cols=159 Identities=14% Similarity=0.059 Sum_probs=108.2
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-----------
Q 044791 275 ADASCFYTLFELCGNPKWYENAKKVHDYFLQS-TIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRS----------- 342 (623)
Q Consensus 275 pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~----------- 342 (623)
-+..+.+.......+.|++++|.+-|....+- |.. ....||..+ +..+.|+.+.|+++..++.+++
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm 219 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGM 219 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccc
Confidence 34555666666677889999999998888775 555 456777555 4456688899998888876541
Q ss_pred ------h---------------HHHHHHHHHHHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044791 343 ------M---------------DSWHLMINGYADNGLGDEGLQLFEQMR-KLGLQPNEQTFLAVFSACGSADAIEEAFIH 400 (623)
Q Consensus 343 ------~---------------~tyn~Li~~~~~~g~~eeA~~l~~eM~-~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l 400 (623)
+ ..+|.-...+.+.|+++.|.+.+-.|- ...-+.|.+|...+.-.=.. ++..+..+-
T Consensus 220 ~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~-~~p~~g~~K 298 (459)
T KOG4340|consen 220 TTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMD-ARPTEGFEK 298 (459)
T ss_pred eeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhccc-CCccccHHH
Confidence 1 145555555677888888888888875 22335577777766443222 334444444
Q ss_pred HHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 401 FESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 401 ~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
+.-+. ++.| -..||..|+-.|||..-++.|-+++-+
T Consensus 299 LqFLL---~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 299 LQFLL---QQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHH---hcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 44444 4445 457899999999999999999999888
No 157
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.23 E-value=0.015 Score=64.30 Aligned_cols=190 Identities=15% Similarity=0.094 Sum_probs=120.1
Q ss_pred HHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCC--------CHHHHHHHHHHHHHcCC
Q 044791 257 CQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQS-TIRG--------DLVLNNKVIEMYGKCGS 327 (623)
Q Consensus 257 ~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-g~~p--------d~~~y~~Li~~y~k~g~ 327 (623)
...-.+++|.++.++. |....|..|.......-.++.|+..|-+...- |++. +...-.+=|.+| -|+
T Consensus 674 ve~vgledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~ 749 (1189)
T KOG2041|consen 674 VEAVGLEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGE 749 (1189)
T ss_pred HHHhchHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcc
Confidence 3344577777777764 55567777777666666777777766554331 3221 111112223333 489
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044791 328 MTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN----EQTFLAVFSACGSADAIEEAFIHFES 403 (623)
Q Consensus 328 ~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd----~~ty~~li~a~~~~g~~e~A~~l~~~ 403 (623)
+++|+++|-+|..+|. .|..+.+.|++-.+..+++. .|-.-| ..+|+.+...++....+++|.+.|..
T Consensus 750 feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 750 FEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988875 45667777888777766643 121111 35788888888888888888888865
Q ss_pred HHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 044791 404 MKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEE 471 (623)
Q Consensus 404 m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~ 471 (623)
-.. -...+++|.+...+++-+.+.+. +. -|....-.|..++...|.-+.|.+++-
T Consensus 822 ~~~----------~e~~~ecly~le~f~~LE~la~~-Lp--e~s~llp~~a~mf~svGMC~qAV~a~L 876 (1189)
T KOG2041|consen 822 CGD----------TENQIECLYRLELFGELEVLART-LP--EDSELLPVMADMFTSVGMCDQAVEAYL 876 (1189)
T ss_pred ccc----------hHhHHHHHHHHHhhhhHHHHHHh-cC--cccchHHHHHHHHHhhchHHHHHHHHH
Confidence 431 12467777777777777777666 43 244455566677777777775555543
No 158
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.014 Score=62.93 Aligned_cols=196 Identities=14% Similarity=0.110 Sum_probs=136.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH----------HHHHH
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD----------SWHLM 349 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~----------tyn~L 349 (623)
+..|+++..+..+++.|++-+...+... -++.-+++...+|...|...+++.+-+...+.+-. ++..+
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~ 304 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL 304 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4456677777777888888887777754 45566667777777777777776666655443322 23334
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHHHH
Q 044791 350 INGYADNGLGDEGLQLFEQMRKLGLQPNEQTF-------------------------LAVFSACGSADAIEEAFIHFESM 404 (623)
Q Consensus 350 i~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty-------------------------~~li~a~~~~g~~e~A~~l~~~m 404 (623)
..+|.+.++++.|+..|.+.+.....||..+= -.-...+.+.|++..|...|.++
T Consensus 305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteA 384 (539)
T KOG0548|consen 305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEA 384 (539)
T ss_pred hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 44566677778888888777665555443321 11245567889999999999999
Q ss_pred HhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 405 KSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-EFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 405 ~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
++. . .-|...|....-+|.+.|.+.+|+.-.+..++..|+. ..|.-=..++....+++.|.+++....+.++.
T Consensus 385 Ikr-~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~ 458 (539)
T KOG0548|consen 385 IKR-D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS 458 (539)
T ss_pred Hhc-C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 954 2 3378899999999999999999999888877766654 34444444555667789899999988887644
No 159
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.21 E-value=0.0034 Score=67.70 Aligned_cols=113 Identities=11% Similarity=0.069 Sum_probs=54.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-C-----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMADR-S-----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAV 384 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-~-----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~l 384 (623)
+......+++.+....++|+|..++-+.... + ..|..++|..|.+.|..++|+.++..=..-|+-||..|||.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 4444444555555555555555555444321 0 113445555555555555555555555555555555555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHH
Q 044791 385 FSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVL 424 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~ 424 (623)
|+.+.+.|++..|.++...|... +...+..|+.--+.+|
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~ 183 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSC 183 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHH
Confidence 55555555555555555555433 3333334433333333
No 160
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.18 E-value=0.0048 Score=53.79 Aligned_cols=102 Identities=12% Similarity=0.066 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC----HHHHHHH
Q 044791 379 QTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT----AEFWEAL 453 (623)
Q Consensus 379 ~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd----~~ty~~L 453 (623)
.++..+...+.+.|++++|.+.|+.+.....-.+ ....+..+..++.+.|++++|+.+|++++...|+ ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3566777888899999999999999986522111 1345667889999999999999999995554454 4567788
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 454 RNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 454 i~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
..++...|+.+.|...++.+.+..+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 889999999999999999998876654
No 161
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.18 E-value=0.0049 Score=58.16 Aligned_cols=61 Identities=11% Similarity=-0.037 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRG--DLVLNNKVIEMYGKCGSMTDARRVFDHMA 339 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~~y~~Li~~y~k~g~~~~A~~lf~~m~ 339 (623)
.|..+...+...|++++|+..|++.+.....+ ...+|..+..+|...|+.++|+..|+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555555555666666666666665532111 12355566666666666666666666554
No 162
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.18 E-value=0.0059 Score=52.86 Aligned_cols=89 Identities=16% Similarity=0.148 Sum_probs=70.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTI-RGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNG 357 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g 357 (623)
|-...|..|...+++.....+|+.+++.|+ .|++.+|+.++.+.++..-=.+ .-.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~-----------------------~ie~ 83 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSE-----------------------DIEN 83 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccch-----------------------hHHH
Confidence 344567777777999999999999999999 8999999999998876432111 1112
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044791 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS 390 (623)
Q Consensus 358 ~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~ 390 (623)
+.-+++.+|+.|+..+++|+..||+.++..+.+
T Consensus 84 kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 84 KLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 346778889999999999999999999988754
No 163
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.17 E-value=0.0018 Score=53.45 Aligned_cols=79 Identities=18% Similarity=0.193 Sum_probs=42.3
Q ss_pred CCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhh--cCChHHHHHHHHHHHHcCChHHHHHHH
Q 044791 290 PKWYENAKKVHDYFLQSTIR-GDLVLNNKVIEMYGKCGSMTDARRVFDHMA--DRSMDSWHLMINGYADNGLGDEGLQLF 366 (623)
Q Consensus 290 ~g~~~~A~~l~~~m~~~g~~-pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~--~~~~~tyn~Li~~~~~~g~~eeA~~l~ 366 (623)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|+.+++... ..+....-.+..+|.+.|++++|+++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 35666666666666664321 133334446666666666666666665521 122223334455666666666666666
Q ss_pred HH
Q 044791 367 EQ 368 (623)
Q Consensus 367 ~e 368 (623)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 164
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.17 E-value=0.014 Score=65.09 Aligned_cols=139 Identities=16% Similarity=0.054 Sum_probs=100.0
Q ss_pred cCChHHHHHHHHHHHHc--CC---hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc--------CCHHHHHHHHHHHH
Q 044791 340 DRSMDSWHLMINGYADN--GL---GDEGLQLFEQMRKLGLQPNE-QTFLAVFSACGSA--------DAIEEAFIHFESMK 405 (623)
Q Consensus 340 ~~~~~tyn~Li~~~~~~--g~---~eeA~~l~~eM~~~g~~Pd~-~ty~~li~a~~~~--------g~~e~A~~l~~~m~ 405 (623)
..+...|...+.|.... ++ .++|..+|++.++. .|+- ..|..+..++... ++++.+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 35777899999885443 33 77999999999985 6653 4444433333221 12334444444433
Q ss_pred hhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 406 SEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 406 ~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
.......+...|.++.-.+...|++++|...|++++...|+...|..+...+...|+.++|.+.++....++|..
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 211122345678777777777899999999999988888999999999999999999999999999999988764
No 165
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.17 E-value=0.013 Score=55.60 Aligned_cols=90 Identities=11% Similarity=0.014 Sum_probs=61.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD--LVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMING 352 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~ 352 (623)
..|..+...+...|++++|...|++.++....+. ...+..+..+|.+.|++++|+..|++..+. +...+..+...
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 4567777777788888888888888776533222 357777888888888888888888877642 34466667777
Q ss_pred HHHcCChHHHHHHHH
Q 044791 353 YADNGLGDEGLQLFE 367 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~ 367 (623)
|...|+...+..-++
T Consensus 116 ~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 116 YHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHcCChHhHhhCHH
Confidence 777776544444333
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.16 E-value=0.0035 Score=66.86 Aligned_cols=92 Identities=15% Similarity=0.071 Sum_probs=47.5
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCH
Q 044791 352 GYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHL 430 (623)
Q Consensus 352 ~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~ 430 (623)
.+...|++++|+.+|+++++..-. +...|..+..+|...|++++|+..+++++. +.| +...|..+..+|...|++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhCCH
Confidence 344555555555555555543211 334455555555555555555555555552 233 334455555555555666
Q ss_pred HHHHHHHHhhCCCCCCH
Q 044791 431 FEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 431 e~A~~lf~~~m~~~Pd~ 447 (623)
++|+..|++++.+.|+.
T Consensus 87 ~eA~~~~~~al~l~P~~ 103 (356)
T PLN03088 87 QTAKAALEKGASLAPGD 103 (356)
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 66666555544444443
No 167
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.13 E-value=0.0018 Score=67.38 Aligned_cols=247 Identities=15% Similarity=0.102 Sum_probs=154.5
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCC-------HHHHHHHHHHHhCCCCHHHHHHHHHH--HHH--cCC-CCCHHHHHHHHH
Q 044791 253 LARLCQEGKVKEAIELMDKGVKAD-------ASCFYTLFELCGNPKWYENAKKVHDY--FLQ--STI-RGDLVLNNKVIE 320 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~~~pd-------~~ty~~Ll~~~~~~g~~~~A~~l~~~--m~~--~g~-~pd~~~y~~Li~ 320 (623)
...+|+.|+....+.+|+..+... ...|.-|.++|.-.+++++|++++.. .+. .|- .-...+...|.+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 456899999999999998644332 35577788888888999999988643 121 111 113456667777
Q ss_pred HHHHcCCHHHHHHHHHHhh----cC-Ch----HHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHH
Q 044791 321 MYGKCGSMTDARRVFDHMA----DR-SM----DSWHLMINGYADNGL--------------------GDEGLQLFEQMRK 371 (623)
Q Consensus 321 ~y~k~g~~~~A~~lf~~m~----~~-~~----~tyn~Li~~~~~~g~--------------------~eeA~~l~~eM~~ 371 (623)
.+--.|.+++|+-...+-. +. |- ..|..|...|...|+ ++.|.++|.+=++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 7878888888876543321 11 11 255667777766654 2334455544221
Q ss_pred ----cCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhC-
Q 044791 372 ----LGLQ-PNEQTFLAVFSACGSADAIEEAFIHFESMK---SEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKL- 441 (623)
Q Consensus 372 ----~g~~-Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~---~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m- 441 (623)
.|-. .-..+|..|...|.-.|+++.|+...+.-. .++|-.. ....+..|.++++-.|.++.|.+.|+..+
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 1111 112467777777777889999987765322 2334322 34578888999999999999999998722
Q ss_pred ---CCC-C--CHHHHHHHHHHHHHcCChhHHHHHHHH----HHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccc
Q 044791 442 ---PFE-P--TAEFWEALRNYARIHGDIDLEDHAEEL----MVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEF 509 (623)
Q Consensus 442 ---~~~-P--d~~ty~~Li~a~~~~g~~~~A~~~~~~----~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~ 509 (623)
++. . ...+..+|.++|....+++.|+....+ ..+++... -....|.+|-.++...|..
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~Dri----------Ge~RacwSLgna~~alg~h 331 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRI----------GELRACWSLGNAFNALGEH 331 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHhhhhH
Confidence 211 1 235666788888777777777665544 23333222 2256777787777777765
No 168
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.12 E-value=0.36 Score=50.54 Aligned_cols=121 Identities=12% Similarity=0.093 Sum_probs=83.5
Q ss_pred hhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCC
Q 044791 406 SEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKK 485 (623)
Q Consensus 406 ~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~ 485 (623)
++++......+.+..|.-+...|....|.++-.+ ..+ ||...|...|.+|+..|+++ ++.+...+ . + +
T Consensus 169 ~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~-Fkv-~dkrfw~lki~aLa~~~~w~---eL~~fa~s-k-K--s--- 236 (319)
T PF04840_consen 169 EKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKE-FKV-PDKRFWWLKIKALAENKDWD---ELEKFAKS-K-K--S--- 236 (319)
T ss_pred HHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHH-cCC-cHHHHHHHHHHHHHhcCCHH---HHHHHHhC-C-C--C---
Confidence 3444433344566667788889999999999998 874 89999999999999999998 44444433 1 1 1
Q ss_pred CCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhc
Q 044791 486 IPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGL 565 (623)
Q Consensus 486 ~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~l 565 (623)
.+-|.-++++|.+.|.. ++|..++.++ ++ .....++.+.|.+.+|.+.
T Consensus 237 -------PIGyepFv~~~~~~~~~--------~eA~~yI~k~------~~-----------~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 237 -------PIGYEPFVEACLKYGNK--------KEASKYIPKI------PD-----------EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred -------CCChHHHHHHHHHCCCH--------HHHHHHHHhC------Ch-----------HHHHHHHHHCCCHHHHHHH
Confidence 25677888888888876 5888887542 11 1222366778888887765
Q ss_pred ccCCC
Q 044791 566 ISTPA 570 (623)
Q Consensus 566 l~~m~ 570 (623)
-.+..
T Consensus 285 A~~~k 289 (319)
T PF04840_consen 285 AFKEK 289 (319)
T ss_pred HHHcC
Confidence 44433
No 169
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.12 E-value=0.011 Score=67.83 Aligned_cols=173 Identities=13% Similarity=0.077 Sum_probs=112.2
Q ss_pred CHHHHHHHHHcCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044791 261 KVKEAIELMDKGVKADA---SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDH 337 (623)
Q Consensus 261 ~~~~A~~l~~~~~~pd~---~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~ 337 (623)
+...|+..|-+.++.|+ ..|..|...|+..-+...|.+.|+...+.. .-|......+.+.|++..++++|..+.-.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 36677777755455443 468889999988888888999998887753 23678888899999999999999988443
Q ss_pred hhcCChH---HHH--HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 044791 338 MADRSMD---SWH--LMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP 412 (623)
Q Consensus 338 m~~~~~~---tyn--~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p 412 (623)
.-+.+.. .+| -+.-.|.+.++...|+.-|+........ |...|..++.+|.+.|++..|.++|.+.. -+.|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs---~LrP 627 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKAS---LLRP 627 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhH---hcCc
Confidence 3333222 222 2333466666777777777766654222 55667777777777777777777776654 3444
Q ss_pred Cccchh--hHHHHHHhcCCHHHHHHHHHh
Q 044791 413 GTEHYL--GLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 413 ~~~ty~--~Li~~~~k~g~~e~A~~lf~~ 439 (623)
+. +|. ....+.|..|++.+|...+..
T Consensus 628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ 655 (1238)
T KOG1127|consen 628 LS-KYGRFKEAVMECDNGKYKEALDALGL 655 (1238)
T ss_pred Hh-HHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 32 122 122334556777777666665
No 170
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.11 E-value=0.0076 Score=64.31 Aligned_cols=100 Identities=10% Similarity=-0.014 Sum_probs=73.8
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChH
Q 044791 284 FELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGD 360 (623)
Q Consensus 284 l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~e 360 (623)
...+...|++++|+++|+++++... -+...|..+..+|.+.|++++|+..++++.+. +...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 4456677888888888888887542 35777888888888888888888888877653 3447888888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044791 361 EGLQLFEQMRKLGLQPNEQTFLAVFS 386 (623)
Q Consensus 361 eA~~l~~eM~~~g~~Pd~~ty~~li~ 386 (623)
+|+..|++.++. .|+......++.
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~l~ 111 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 888888888874 455554444443
No 171
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.10 E-value=0.01 Score=65.01 Aligned_cols=253 Identities=15% Similarity=0.127 Sum_probs=130.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCC-----------CCHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCCCCCHHHHHH
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVK-----------ADASCFYTLFELCGNPKWYE--NAKKVHDYFLQSTIRGDLVLNNK 317 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~-----------pd~~ty~~Ll~~~~~~g~~~--~A~~l~~~m~~~g~~pd~~~y~~ 317 (623)
+-+-.|..+|.+++|..+---|+. .+.-.|++.=++|.+..++. +.+.-+++|++.|-.|+...
T Consensus 561 ~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL--- 637 (1081)
T KOG1538|consen 561 APMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL--- 637 (1081)
T ss_pred ccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---
Confidence 445668889999999876432322 33445666667777776654 33344567778887787654
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044791 318 VIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEA 397 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A 397 (623)
+...++-.|++.||-++|.+ .|.-..|+++|..|.-- -+..-+...|.-++-
T Consensus 638 lA~~~Ay~gKF~EAAklFk~------------------~G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eK 689 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKR------------------SGHENRALEMYTDLRMF----------DYAQEFLGSGDPKEK 689 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHH------------------cCchhhHHHHHHHHHHH----------HHHHHHhhcCChHHH
Confidence 45556677889998888754 44455555555554421 111222333333333
Q ss_pred HHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHH-------------HhhCCCCCCHHHHHHHHHHHHHcCChh
Q 044791 398 FIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFI-------------EQKLPFEPTAEFWEALRNYARIHGDID 464 (623)
Q Consensus 398 ~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf-------------~~~m~~~Pd~~ty~~Li~a~~~~g~~~ 464 (623)
..+.+.-. ...-++.---+-.+++..+|+.++|.++. ++ +. .-+..+...+..-+.+...+.
T Consensus 690 KmL~RKRA---~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rk-ld-~~ere~l~~~a~ylk~l~~~g 764 (1081)
T KOG1538|consen 690 KMLIRKRA---DWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARK-LD-KAEREPLLLCATYLKKLDSPG 764 (1081)
T ss_pred HHHHHHHH---HHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhh-cc-hhhhhHHHHHHHHHhhccccc
Confidence 33222111 11111111122344455555555555443 33 22 122334444444444555566
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcce----ee
Q 044791 465 LEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRY----VL 540 (623)
Q Consensus 465 ~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t----~~ 540 (623)
.|.+++..|-+| .+++......++| +||..+-++.- .++||... |.
T Consensus 765 LAaeIF~k~gD~--------------------ksiVqlHve~~~W--------~eAFalAe~hP--e~~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 765 LAAEIFLKMGDL--------------------KSLVQLHVETQRW--------DEAFALAEKHP--EFKDDVYMPYAQWL 814 (1081)
T ss_pred hHHHHHHHhccH--------------------HHHhhheeecccc--------hHhHhhhhhCc--cccccccchHHHHh
Confidence 666666655443 3456667777777 58877764432 34455432 22
Q ss_pred eccCHHHHHHHHHHHHhHHHHHHhcccCC
Q 044791 541 HDIDQEAKEQALLYHSERLAIAYGLISTP 569 (623)
Q Consensus 541 ~li~~~~k~~~~~~~~g~l~~A~~ll~~m 569 (623)
.--+....+...+.++|+-.||..+++..
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 22222333444555556666665555443
No 172
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.04 E-value=0.016 Score=53.67 Aligned_cols=90 Identities=12% Similarity=0.115 Sum_probs=60.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 044791 317 KVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADA 393 (623)
Q Consensus 317 ~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~ 393 (623)
.+...+...|++++|.++|+-+..- +..-|-.|..+|-..|++++|+..|.......+ -|...+-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence 4455566677777777777766543 333566677777777777777777777776543 255666677777777777
Q ss_pred HHHHHHHHHHHHhh
Q 044791 394 IEEAFIHFESMKSE 407 (623)
Q Consensus 394 ~e~A~~l~~~m~~~ 407 (623)
.+.|++.|+..+..
T Consensus 119 ~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 119 VCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777777766654
No 173
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.03 E-value=0.0045 Score=62.42 Aligned_cols=100 Identities=21% Similarity=0.211 Sum_probs=80.0
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-ccchhhHHHHHHhcC
Q 044791 351 NGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TEHYLGLVGVLGKCG 428 (623)
Q Consensus 351 ~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~~~k~g 428 (623)
+-+.+.++|.+|+..|.+.++. .| |.+-|..-..+|++.|.++.|++-.+..+ .+.|. ..+|..|..+|...|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccC
Confidence 4467788999999999998885 54 55666666778999999999988777666 56664 678999999999999
Q ss_pred CHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 044791 429 HLFEAQQFIEQKLPFEPTAEFWEALRN 455 (623)
Q Consensus 429 ~~e~A~~lf~~~m~~~Pd~~ty~~Li~ 455 (623)
++++|++.|++++++.|+-.+|..=+.
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 999999999998899998877765444
No 174
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.99 E-value=0.058 Score=58.45 Aligned_cols=182 Identities=15% Similarity=0.178 Sum_probs=128.7
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHhhcC---Ch-HHHHHHHHHHHHcCChHHHHHHH
Q 044791 294 ENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC---GSMTDARRVFDHMADR---SM-DSWHLMINGYADNGLGDEGLQLF 366 (623)
Q Consensus 294 ~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~---g~~~~A~~lf~~m~~~---~~-~tyn~Li~~~~~~g~~eeA~~l~ 366 (623)
+++..++++.+..-..-+..+|..+.+-=-.. ...+...++++++... +. .+|-.+|+.-.+..-++.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 44555555554432233444444433221111 1245555566655432 22 27888999989988899999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC--C
Q 044791 367 EQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP--F 443 (623)
Q Consensus 367 ~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~--~ 443 (623)
.+..+.+..+ +++.++++|..+|. ++.+-|.++|+-=.+++|-. ..--...++-+...++-..|..+|++++. +
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~--p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDS--PEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCC--hHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 9999998888 78888899988775 78899999998766654433 33345678888999999999999999544 2
Q ss_pred CCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 044791 444 EPT--AEFWEALRNYARIHGDIDLEDHAEELMVDLDP 478 (623)
Q Consensus 444 ~Pd--~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~ 478 (623)
.+| ...|..+|.-=...|++..+.++.+++...-+
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 333 47999999999999999988888888776555
No 175
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.98 E-value=0.01 Score=55.93 Aligned_cols=75 Identities=13% Similarity=-0.025 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC--CCCC----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKG--VKAD----ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEM 321 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~--~~pd----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~ 321 (623)
.+..+...+...|++++|+..|++. +.++ ..++..+..++...|++++|++.+++.++.. +....++..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 3446666777899999999999864 3333 2478889999999999999999999998752 2235666677767
Q ss_pred HH
Q 044791 322 YG 323 (623)
Q Consensus 322 y~ 323 (623)
|.
T Consensus 116 ~~ 117 (168)
T CHL00033 116 CH 117 (168)
T ss_pred HH
Confidence 76
No 176
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.94 E-value=0.31 Score=45.67 Aligned_cols=218 Identities=20% Similarity=0.141 Sum_probs=153.1
Q ss_pred cCCHHHHHHHHHc--CCCC---CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044791 259 EGKVKEAIELMDK--GVKA---DASCFYTLFELCGNPKWYENAKKVHDYFLQS-TIRGDLVLNNKVIEMYGKCGSMTDAR 332 (623)
Q Consensus 259 ~g~~~~A~~l~~~--~~~p---d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-g~~pd~~~y~~Li~~y~k~g~~~~A~ 332 (623)
.+....+...+.. ...+ ....+..+...+...+.+..+...+...... ........+..+...+...+...+|.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 3445555555543 2222 3567888888888999999999888887752 23445677778888888889999999
Q ss_pred HHHHHhhcCCh---HHHHHHHH-HHHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 333 RVFDHMADRSM---DSWHLMIN-GYADNGLGDEGLQLFEQMRKLGL--QPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 333 ~lf~~m~~~~~---~tyn~Li~-~~~~~g~~eeA~~l~~eM~~~g~--~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
+++......+. ........ .+...|++++|...|.+...... .-....+......+...++.+.|...+..+..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 99998875322 23444444 78899999999999999865321 12334455555557788999999999998884
Q ss_pred hcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 044791 407 EFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-AEFWEALRNYARIHGDIDLEDHAEELMVDLDP 478 (623)
Q Consensus 407 ~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~ 478 (623)
. ... ....+..+...+...+++++|...+..++...|+ ...+..+...+...|..+.+...+.......+
T Consensus 196 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 196 L--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred h--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3 222 3566778888888899999999999996666665 44555555555567778888777777776544
No 177
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.92 E-value=0.013 Score=67.19 Aligned_cols=176 Identities=14% Similarity=0.100 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCChHHHHHHHHH
Q 044791 293 YENAKKVHDYFLQSTIRGD-LVLNNKVIEMYGKCGSMTDARRVFDHMADRS---MDSWHLMINGYADNGLGDEGLQLFEQ 368 (623)
Q Consensus 293 ~~~A~~l~~~m~~~g~~pd-~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~---~~tyn~Li~~~~~~g~~eeA~~l~~e 368 (623)
...|+..|-+.++ +.++ ...|..|...|+...+...|.+.|++..+.| +..+-.+.+.|++..++++|..+.-.
T Consensus 474 ~~~al~ali~alr--ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALR--LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHh--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 4444444433333 2222 4678889999998889999999999887654 45888899999999999999998333
Q ss_pred HHHcCCCC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCC
Q 044791 369 MRKLGLQP-NEQTFLA--VFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE 444 (623)
Q Consensus 369 M~~~g~~P-d~~ty~~--li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~ 444 (623)
.-+. .| -...++. +.-.|.+.+++..|..-|+... .+.| |...|..|..+|..+|++..|.++|.++..++
T Consensus 552 ~~qk--a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsAL---R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 552 AAQK--APAFACKENWVQRGPYYLEAHNLHGAVCEFQSAL---RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred Hhhh--chHHHHHhhhhhccccccCccchhhHHHHHHHHh---cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 2222 11 1122222 3345677889999998888776 5667 78899999999999999999999999966677
Q ss_pred CCHHHHHHHHH-HHHHcCChhHHHHHHHHHHh
Q 044791 445 PTAEFWEALRN-YARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 445 Pd~~ty~~Li~-a~~~~g~~~~A~~~~~~~~~ 475 (623)
|+...-...+. .-+..|..++|..++.++..
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 76532222222 34567777777777666544
No 178
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.90 E-value=0.011 Score=54.62 Aligned_cols=105 Identities=9% Similarity=0.081 Sum_probs=81.6
Q ss_pred HHHHHhh-cCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 044791 333 RVFDHMA-DRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGI 410 (623)
Q Consensus 333 ~lf~~m~-~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~ 410 (623)
..+..|. ..+....-.+...+...|++++|..+|+-.... .| +..-|..|..+|-..|++++|+..|.... -+
T Consensus 24 ~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~---~L 98 (157)
T PRK15363 24 RMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA---QI 98 (157)
T ss_pred HHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH---hc
Confidence 3344444 445556666777789999999999999998875 44 44556677777888899999999999887 34
Q ss_pred CC-CccchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 411 SP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 411 ~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
.| |...+-.+..+|.+.|+.++|.+.|+.++.
T Consensus 99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44 677888889999999999999999998443
No 179
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.84 E-value=1.1 Score=51.63 Aligned_cols=218 Identities=12% Similarity=0.074 Sum_probs=139.5
Q ss_pred HHHcCCHHHHHHHHHc--CCCCCHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044791 256 LCQEGKVKEAIELMDK--GVKADASCFYTLFELC--GNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDA 331 (623)
Q Consensus 256 ~~~~g~~~~A~~l~~~--~~~pd~~ty~~Ll~~~--~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A 331 (623)
....+++..|+....+ .-.|+. .|..+++++ .+.|+.++|..+++.....+.. |..|...|-.+|.+.|..|+|
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 4456778888877654 224553 355555554 6789999999999888776655 899999999999999999999
Q ss_pred HHHHHHhhcC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------CHHHHHH
Q 044791 332 RRVFDHMADR--SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD----------AIEEAFI 399 (623)
Q Consensus 332 ~~lf~~m~~~--~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g----------~~e~A~~ 399 (623)
..+|++.... +......+..+|+|.+.+.+--+.=-+|-+ .+.-..+.|-++++.....- -+--|.+
T Consensus 97 ~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 97 VHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 9999999764 444555666778888877653333222222 23335566666666654321 1345677
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC-C--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 400 HFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-F--EPTAEFWEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 400 l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-~--~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
.++.+.++.|-.-+..-.-.-...+-..|++++|.+++..... . .-+...-+.-+..+...+++.+..++...+.+-
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 7777776644111111111123345667899999999965232 1 123344455666777888888655555555553
No 180
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.83 E-value=0.0026 Score=52.55 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=20.4
Q ss_pred CChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044791 357 GLGDEGLQLFEQMRKLGLQ-PNEQTFLAVFSACGSADAIEEAFIHFES 403 (623)
Q Consensus 357 g~~eeA~~l~~eM~~~g~~-Pd~~ty~~li~a~~~~g~~e~A~~l~~~ 403 (623)
|++++|+.+|+++.+.... ++...+..+..+|.+.|++++|+.+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555555443221 1222233344455555555555555544
No 181
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.81 E-value=0.012 Score=59.34 Aligned_cols=97 Identities=14% Similarity=0.174 Sum_probs=67.7
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH---HHHHHHHHHHHcCChHHH
Q 044791 286 LCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD---SWHLMINGYADNGLGDEG 362 (623)
Q Consensus 286 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~---tyn~Li~~~~~~g~~eeA 362 (623)
-+.+.+++.+|+..|.+.++.. +-|.+-|..-..+|++.|.++.|++-.+....-|.. +|..|..+|...|++++|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4456677777777777777742 235677777777777777777777777776665554 677777777777777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH
Q 044791 363 LQLFEQMRKLGLQPNEQTFLAVF 385 (623)
Q Consensus 363 ~~l~~eM~~~g~~Pd~~ty~~li 385 (623)
++.|++.++ +.|+-.+|-.=|
T Consensus 169 ~~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 169 IEAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHHhhhc--cCCCcHHHHHHH
Confidence 777777666 467666654433
No 182
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.77 E-value=0.028 Score=49.91 Aligned_cols=108 Identities=17% Similarity=0.169 Sum_probs=70.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHH
Q 044791 349 MINGYADNGLGDEGLQLFEQMRKLGLQPN--EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLG 425 (623)
Q Consensus 349 Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd--~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~ 425 (623)
+..++-..|+.++|+.+|++..+.|+... ...+..+.+.+...|++++|..+|++....+.-.+ +......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44567778888888888888888887654 34566677788888888888888888875421111 1122222334667
Q ss_pred hcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 044791 426 KCGHLFEAQQFIEQKLPFEPTAEFWEALRNYAR 458 (623)
Q Consensus 426 k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~ 458 (623)
..|+.++|++.+-..+. ++...|.--|..|.
T Consensus 87 ~~gr~~eAl~~~l~~la--~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA--ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 78888888888766332 33345555555554
No 183
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.76 E-value=0.05 Score=58.93 Aligned_cols=175 Identities=11% Similarity=0.190 Sum_probs=110.6
Q ss_pred HHHHHHHHcCCC----CCHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044791 263 KEAIELMDKGVK----ADASCFYTLFELC---GNPKWYENAKKVHDYFLQST-IRGDLVLNNKVIEMYGKCGSMTDARRV 334 (623)
Q Consensus 263 ~~A~~l~~~~~~----pd~~ty~~Ll~~~---~~~g~~~~A~~l~~~m~~~g-~~pd~~~y~~Li~~y~k~g~~~~A~~l 334 (623)
++|.+++++++. -+..+|..+.+-= ......+...+.+++++..- ..| ..+|-.+|+...|..-+..|+.+
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHH
Confidence 444455554332 2444555554422 22223566667777666542 233 35667777777777788888888
Q ss_pred HHHhhcC-----ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 044791 335 FDHMADR-----SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFG 409 (623)
Q Consensus 335 f~~m~~~-----~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g 409 (623)
|.+..+. .+..++++|.-||.. +.+-|.++|+-=+++ ..-+..--...++.+...++-..|..+|++.+.. +
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~csk-D~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s-~ 465 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYCSK-DKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS-V 465 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHhcC-ChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc-c
Confidence 8877652 445677777766654 567788888765543 1212333345677777778888888888888866 6
Q ss_pred CCCC--ccchhhHHHHHHhcCCHHHHHHHHHhhC
Q 044791 410 ISPG--TEHYLGLVGVLGKCGHLFEAQQFIEQKL 441 (623)
Q Consensus 410 ~~p~--~~ty~~Li~~~~k~g~~e~A~~lf~~~m 441 (623)
+.++ ...|..+|+-=...|++..+.++-++.+
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 6654 4678888887788888888888777733
No 184
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.68 E-value=0.12 Score=54.94 Aligned_cols=135 Identities=16% Similarity=0.166 Sum_probs=107.7
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccc-hh
Q 044791 341 RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLG-LQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEH-YL 418 (623)
Q Consensus 341 ~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g-~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~t-y~ 418 (623)
.-...|-++|++..+..-++.|..+|-+..+.| +.++++.++++|..+| .|+..-|..+|+.=... -+|... -+
T Consensus 395 k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~---f~d~~~y~~ 470 (660)
T COG5107 395 KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK---FPDSTLYKE 470 (660)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh---CCCchHHHH
Confidence 334578899999888888999999999999999 7789999999998876 47888999999765533 344333 34
Q ss_pred hHHHHHHhcCCHHHHHHHHHhhCC-CCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 419 GLVGVLGKCGHLFEAQQFIEQKLP-FEPT--AEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 419 ~Li~~~~k~g~~e~A~~lf~~~m~-~~Pd--~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
..+.-+...++-+.|..+|+.+++ +..+ ...|..+|.-=...|++..+..+.++|.+..+.
T Consensus 471 kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 471 KYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 567778889999999999997443 3333 468999999989999999999999999887654
No 185
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.68 E-value=0.24 Score=51.87 Aligned_cols=103 Identities=18% Similarity=0.163 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVL 424 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~ 424 (623)
+.+..|.-|...|+...|.++-.+.+ .||-.-|...|.+++..+++++-..+... . -...-|..++++|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----k--KsPIGyepFv~~~ 247 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-----K--KSPIGYEPFVEAC 247 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----C--CCCCChHHHHHHH
Confidence 44445555666666666666544432 35666666666677777776665554321 1 1235566666666
Q ss_pred HhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHH
Q 044791 425 GKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLE 466 (623)
Q Consensus 425 ~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A 466 (623)
.+.|...+|..+..+ +. +..-+..|.+.|++.+|
T Consensus 248 ~~~~~~~eA~~yI~k-~~-------~~~rv~~y~~~~~~~~A 281 (319)
T PF04840_consen 248 LKYGNKKEASKYIPK-IP-------DEERVEMYLKCGDYKEA 281 (319)
T ss_pred HHCCCHHHHHHHHHh-CC-------hHHHHHHHHHCCCHHHH
Confidence 666666666666666 32 12334445555555544
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.63 E-value=0.048 Score=48.46 Aligned_cols=88 Identities=10% Similarity=0.014 Sum_probs=49.9
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhhc--CC----hHHHHHHHHHHHH
Q 044791 284 FELCGNPKWYENAKKVHDYFLQSTIRGD--LVLNNKVIEMYGKCGSMTDARRVFDHMAD--RS----MDSWHLMINGYAD 355 (623)
Q Consensus 284 l~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~y~~Li~~y~k~g~~~~A~~lf~~m~~--~~----~~tyn~Li~~~~~ 355 (623)
..++-..|+.++|+.+|++.+..|+..+ ...+-.+...|...|++++|+.+|++... ++ ......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3455556677777777777776665533 23444455666666777777777765543 22 1122223335566
Q ss_pred cCChHHHHHHHHHHHH
Q 044791 356 NGLGDEGLQLFEQMRK 371 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~ 371 (623)
.|+.++|+..+-....
T Consensus 88 ~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA 103 (120)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 6777777666655443
No 187
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.61 E-value=0.13 Score=54.49 Aligned_cols=164 Identities=13% Similarity=0.112 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChH----HHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMADR---SMD----SWHLMINGYAD---NGLGDEGLQLFEQMRKLGLQPNEQTFLA 383 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~----tyn~Li~~~~~---~g~~eeA~~l~~eM~~~g~~Pd~~ty~~ 383 (623)
+.-.|+-.|....+++..+++.+.|... ++. .--...-++.+ .|+.++|+.++..++...-.++..||..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3345666799999999999999999764 222 22234455667 8999999999999877777788889988
Q ss_pred HHHHHHhc---------CCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHH----HHHHHH---Hh------hC
Q 044791 384 VFSACGSA---------DAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLF----EAQQFI---EQ------KL 441 (623)
Q Consensus 384 li~a~~~~---------g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e----~A~~lf---~~------~m 441 (623)
+...|-.. ..+++|+..|.+-- .+.++..+--.++..+.-.|.-. +..++- .. ..
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 87776432 23667776665433 45554433223333344444321 222222 11 11
Q ss_pred CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 442 PFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 442 ~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
+-..|...+.+++.++.-.|+.+.|..+.+.+..+.+..
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 133567888899999999999999999999999886543
No 188
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.58 E-value=0.12 Score=52.11 Aligned_cols=178 Identities=13% Similarity=0.086 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHhhcCC----hHHHHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLN---NKVIEMYGKCGSMTDARRVFDHMADRS----MDSWHL 348 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y---~~Li~~y~k~g~~~~A~~lf~~m~~~~----~~tyn~ 348 (623)
+...+-.....+.+.|++++|++.|++++..-... .... -.|+.+|.+.+++++|+..|++..+.. -+.|-.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 44444445556667889999999999888753222 2222 345677788899999999998886532 123444
Q ss_pred HHHHHHH--cC---------------C---hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 044791 349 MINGYAD--NG---------------L---GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEF 408 (623)
Q Consensus 349 Li~~~~~--~g---------------~---~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~ 408 (623)
.+.|++. .+ + ..+|+..|+++++ -|=...-..+|...+..+....
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~l 174 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDRL 174 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHHH
Confidence 4444331 11 1 1234444444443 3333334455544333333210
Q ss_pred CCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 044791 409 GISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT----AEFWEALRNYARIHGDIDLEDHAEELMV 474 (623)
Q Consensus 409 g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd----~~ty~~Li~a~~~~g~~~~A~~~~~~~~ 474 (623)
...--.+..-|.+.|.+..|..=|+.++.--|+ ......|+.+|...|..++|..+...+.
T Consensus 175 -----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 175 -----AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -----HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 001113556688889988888888875543443 3566678889999999998887777664
No 189
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.099 Score=51.95 Aligned_cols=137 Identities=15% Similarity=0.006 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHH-
Q 044791 344 DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVG- 422 (623)
Q Consensus 344 ~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~- 422 (623)
...++++..+.-.|++.-.+.++.+..+..-+-+......|++.-...||++.|...|++..+. .-+.+..+++.++.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHh
Confidence 3567788888888999999999999999776778888888888888999999999999988866 44556666666553
Q ss_pred ----HHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC
Q 044791 423 ----VLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKA 481 (623)
Q Consensus 423 ----~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~ 481 (623)
.|.-.+++.+|...|++++...+ |.+.-|.-.-+..-.|+..+|.+.++.+.+..|...
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 35567889999999988444333 555555544455556889888888888887766543
No 190
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.41 E-value=0.023 Score=57.75 Aligned_cols=100 Identities=15% Similarity=0.168 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-Cccchhh
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE----QTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLG 419 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~----~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~ 419 (623)
.|...+..+.+.|++++|+..|+.+++.. |+. ..+-.+..+|...|++++|...|+.+.+.+.-.+ ....+-.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 46655555566788888888888887753 332 3556677777788888888888888875433222 1233334
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 044791 420 LVGVLGKCGHLFEAQQFIEQKLPFEPT 446 (623)
Q Consensus 420 Li~~~~k~g~~e~A~~lf~~~m~~~Pd 446 (623)
+...|.+.|+.++|.++|++.+...|+
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 555666778888888888774444444
No 191
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.39 E-value=0.21 Score=48.78 Aligned_cols=45 Identities=16% Similarity=-0.014 Sum_probs=23.8
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCChh
Q 044791 420 LVGVLGKCGHLFEAQQFIEQKLPFEPTA----EFWEALRNYARIHGDID 464 (623)
Q Consensus 420 Li~~~~k~g~~e~A~~lf~~~m~~~Pd~----~ty~~Li~a~~~~g~~~ 464 (623)
+..-|.+.|.+..|..-|+.++..-|+. ...-.|+.+|.+.|..+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 4555666666666666666644433433 23455555666666655
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.39 E-value=0.42 Score=45.29 Aligned_cols=121 Identities=14% Similarity=0.115 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCCHHHH
Q 044791 309 RGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD----RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLG---LQPNEQTF 381 (623)
Q Consensus 309 ~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~----~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g---~~Pd~~ty 381 (623)
.|++.---.|..++.+.|+..||...|++... .|....-.+..+....+++.+|...++++.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 34444444555556666666666666655442 244445555555555566666666665555432 1122 23
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHH
Q 044791 382 LAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQ 434 (623)
Q Consensus 382 ~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~ 434 (623)
..+.+++...|+.+.|+.-|+... .+-|+...-.-....+.+.|+.++|.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~---~~ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAI---SYYPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHH---HhCCCHHHHHHHHHHHHHhcchhHHH
Confidence 334455555566666666665555 23343333223334455555555443
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.36 E-value=0.32 Score=48.95 Aligned_cols=176 Identities=12% Similarity=0.034 Sum_probs=106.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHc--CCCCCHH-H---HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044791 249 SVADLARLCQEGKVKEAIELMDK--GVKADAS-C---FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMY 322 (623)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~l~~~--~~~pd~~-t---y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y 322 (623)
.......+...|++++|++.|++ ...|+.. . .-.++.++.+.+++++|...+++.++.-..-...-|...+.++
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~ 114 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGL 114 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHH
Confidence 33556667789999999999975 3344432 2 3456788899999999999999999863221123333344443
Q ss_pred HH--cC---------------CH---HHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 044791 323 GK--CG---------------SM---TDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFL 382 (623)
Q Consensus 323 ~k--~g---------------~~---~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~ 382 (623)
+. .+ +. .+|+..|+ .+|.-|=...-..+|...+..+... =..--.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~-----------~li~~yP~S~ya~~A~~rl~~l~~~----la~~e~ 179 (243)
T PRK10866 115 TNMALDDSALQGFFGVDRSDRDPQHARAAFRDFS-----------KLVRGYPNSQYTTDATKRLVFLKDR----LAKYEL 179 (243)
T ss_pred hhhhcchhhhhhccCCCccccCHHHHHHHHHHHH-----------HHHHHCcCChhHHHHHHHHHHHHHH----HHHHHH
Confidence 31 11 11 23333333 4444444444455555544444321 001112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 383 AVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 383 ~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
.+..-|.+.|.+..|..-|+.+++++.-.+ .......|+.+|.+.|..++|..+...
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 455667778888888888888886654333 344555677888888888888776655
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.33 E-value=0.49 Score=44.85 Aligned_cols=128 Identities=13% Similarity=0.085 Sum_probs=97.2
Q ss_pred CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhH
Q 044791 341 RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGL 420 (623)
Q Consensus 341 ~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~L 420 (623)
+.+..--.|..++.+.|++.||...|++....=+.-|......+..+....++...|...++.+.+...-.-...+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 45556667889999999999999999999876566688888889999999999999999999988542111123344566
Q ss_pred HHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 044791 421 VGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDH 468 (623)
Q Consensus 421 i~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~ 468 (623)
...|...|+.+.|+.-|+.++...|+...-...-..+++.|+.+++..
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHH
Confidence 788999999999999999977777776443333345567887776644
No 195
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.27 E-value=0.02 Score=46.25 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=10.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHH
Q 044791 380 TFLAVFSACGSADAIEEAFIHFES 403 (623)
Q Consensus 380 ty~~li~a~~~~g~~e~A~~l~~~ 403 (623)
+++.+..+|...|++++|++++++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333444444444444444444433
No 196
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.24 E-value=1.5 Score=46.15 Aligned_cols=246 Identities=13% Similarity=0.047 Sum_probs=149.6
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCCH-HHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKADA-SCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd~-~ty~ 281 (623)
-.|+++.|.+-|+.|.. +..+..+. .-.|.-.--+.|..+.|...-+. +..|.. -.+.
T Consensus 132 ~eG~~~~Ar~kfeAMl~-------dPEtRllG------------LRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~ 192 (531)
T COG3898 132 LEGDYEDARKKFEAMLD-------DPETRLLG------------LRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAAR 192 (531)
T ss_pred hcCchHHHHHHHHHHhc-------ChHHHHHh------------HHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHH
Confidence 58999999999998843 11111100 11333344577888888777654 555654 4677
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcC-CCCCHHH--HHHHHHHHHH---cCCHHHHHHHHHHhh--cCChH-HHHHHHHH
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQST-IRGDLVL--NNKVIEMYGK---CGSMTDARRVFDHMA--DRSMD-SWHLMING 352 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~--y~~Li~~y~k---~g~~~~A~~lf~~m~--~~~~~-tyn~Li~~ 352 (623)
.++...|..|+++.|+++++.-+... +.+|+.- -..|+.+-+. ..+...|...-.+.. .+|.+ .--.-..+
T Consensus 193 AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAra 272 (531)
T COG3898 193 ATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARA 272 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHH
Confidence 88889999999999999998766542 3444321 2223222111 123333443333332 34544 33444567
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHH
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLF 431 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e 431 (623)
|.+.|+..++-.+++.+-+....|+... +-.+.+.|+. +..-+++.++-..++| +.++-.++..+-...|++.
T Consensus 273 lf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~ 346 (531)
T COG3898 273 LFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS 346 (531)
T ss_pred HHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence 9999999999999999998866666531 2233455543 3333333332224445 4566667778888889988
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHH-HHcCChhHHHHHHHHHHh
Q 044791 432 EAQQFIEQKLPFEPTAEFWEALRNYA-RIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 432 ~A~~lf~~~m~~~Pd~~ty~~Li~a~-~~~g~~~~A~~~~~~~~~ 475 (623)
.|..--+......|....|-.|.+.- +..||-+++...+.....
T Consensus 347 ~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 347 AARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 87776666445678888998888854 455888866555554443
No 197
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.22 E-value=0.069 Score=48.90 Aligned_cols=71 Identities=21% Similarity=0.355 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hcCCCCCccc
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS----EFGISPGTEH 416 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~----~~g~~p~~~t 416 (623)
+...++..+...|++++|+.+.+.+.... .-|...|..+|.+|...|+..+|.++|+.+.. +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 56667777778888888888888888753 22677888888888888888888888876653 3466666543
No 198
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.21 E-value=1.3 Score=45.55 Aligned_cols=220 Identities=12% Similarity=0.070 Sum_probs=118.0
Q ss_pred cCCChHHHHHHHHHhcCCC--CCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcC-CHHHHHHHHHc----------
Q 044791 205 QNQGYPQARNSYQQVSPGH--QIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEG-KVKEAIELMDK---------- 271 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~l~~~---------- 271 (623)
++|+++.|..+|.+..... ..|+.... ....+..+.......+ ++++|...+++
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~-------------La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~ 71 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEE-------------LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK 71 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHH-------------HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh
Confidence 5899999999999884422 11111111 1123445555566666 88888776642
Q ss_pred --CCCCCH-----HHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 044791 272 --GVKADA-----SCFYTLFELCGNPKWYE---NAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR 341 (623)
Q Consensus 272 --~~~pd~-----~ty~~Ll~~~~~~g~~~---~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~ 341 (623)
...++. .++..|+.+|...+..+ +|..+++.+.+.... ...++-.-+..+.+.++.+++.+++.+|...
T Consensus 72 ~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 72 MDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 122333 45667777777766544 455566666544221 2445555566666688888888888888643
Q ss_pred -C--hHHHHHHHHHH---HHcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHH---HHHhc------CCHHHHHHHHHHH
Q 044791 342 -S--MDSWHLMINGY---ADNGLGDEGLQLFEQMRKLGLQPNEQTF--LAVFS---ACGSA------DAIEEAFIHFESM 404 (623)
Q Consensus 342 -~--~~tyn~Li~~~---~~~g~~eeA~~l~~eM~~~g~~Pd~~ty--~~li~---a~~~~------g~~e~A~~l~~~m 404 (623)
+ ...+..++..+ ... ....|...+..++...+.+....+ ..++. ..... .+++...++++.+
T Consensus 151 ~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v 229 (278)
T PF08631_consen 151 VDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIV 229 (278)
T ss_pred cccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHH
Confidence 2 23455555554 332 345677777777765555554311 11111 11111 1244555555544
Q ss_pred HhhcCCCCCccchhhHHHH-------HHhcCCHHHHHHHHHh
Q 044791 405 KSEFGISPGTEHYLGLVGV-------LGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 405 ~~~~g~~p~~~ty~~Li~~-------~~k~g~~e~A~~lf~~ 439 (623)
.+..+...+..+-.++... +.+.+++++|.++|+-
T Consensus 230 ~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 230 EHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 4333334444443333322 4445677777777764
No 199
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.20 E-value=1.1 Score=41.87 Aligned_cols=196 Identities=19% Similarity=0.174 Sum_probs=142.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcCC-----CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKGV-----KADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIE- 320 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~~-----~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~- 320 (623)
.........+...+.+..+...+.... ......+..+...+...+++..+.+++.......... .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 344566778889999999998886532 3344567777888888888999999999988754433 222333333
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCh------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044791 321 MYGKCGSMTDARRVFDHMADRSM------DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAI 394 (623)
Q Consensus 321 ~y~k~g~~~~A~~lf~~m~~~~~------~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~ 394 (623)
++...|++++|...|++....+. ..+......+...+++++|+..+.++......-....+..+...+...+++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 78999999999999998755332 244444555778899999999999998763221467788888889999999
Q ss_pred HHHHHHHHHHHhhcCCCCC-ccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 044791 395 EEAFIHFESMKSEFGISPG-TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT 446 (623)
Q Consensus 395 e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd 446 (623)
+.|...+...... .++ ...+..+...+...|..++|...+.+.....|+
T Consensus 219 ~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALEL---DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhh---CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 9999999988843 333 334455555555777899999999885555555
No 200
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.20 E-value=0.023 Score=44.16 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=8.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQM 369 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM 369 (623)
|..+..++...|++++|..+|+++
T Consensus 34 ~~~lg~~~~~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 34 WYLLGRILYQQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333333333333333333333333
No 201
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.18 E-value=0.056 Score=49.52 Aligned_cols=69 Identities=22% Similarity=0.423 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHH-----HcCCCCCHHHH
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMR-----KLGLQPNEQTF 381 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~-----~~g~~Pd~~ty 381 (623)
.+...++..+...|++++|+.+.+.+... +...|..+|.+|...|+..+|+++|+++. +.|+.|+..|-
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34566777888899999999999998764 44599999999999999999999999885 46999987764
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.13 E-value=0.24 Score=49.32 Aligned_cols=138 Identities=9% Similarity=-0.040 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH---
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMADRS----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFS--- 386 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~~~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~--- 386 (623)
+.+.+++++.-.|.+.-.+.++.+..+++ .+.-..|+..-...|+.+.|...|++..+..-+.|..+++.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34455555555566666666666655543 33444555555556777777777776654433444444444432
Q ss_pred --HHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHH
Q 044791 387 --ACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEAL 453 (623)
Q Consensus 387 --a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~L 453 (623)
.|.-++++.+|...|.++..... -|+..-|.-.-++.-.|+..+|++.++.+.+..|...+-+++
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~ 325 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESV 325 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhH
Confidence 34445667777777766663211 133333333333344577777777777755556655444433
No 203
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.09 E-value=0.019 Score=44.67 Aligned_cols=59 Identities=29% Similarity=0.290 Sum_probs=36.1
Q ss_pred HHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 421 VGVLGKCGHLFEAQQFIEQKLPFEPT-AEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 421 i~~~~k~g~~e~A~~lf~~~m~~~Pd-~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
...+.+.|++++|+++|++++...|+ ...|..+..++...|++++|...++.+.+..|+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 44566666677777777665555553 345556666666667777666666666665554
No 204
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.06 E-value=0.76 Score=51.43 Aligned_cols=85 Identities=19% Similarity=0.201 Sum_probs=41.7
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCC-C----HHHHHHHHHHHhCCCCHHHHHHHHHH-------------------HH--Hc
Q 044791 253 LARLCQEGKVKEAIELMDKGVKA-D----ASCFYTLFELCGNPKWYENAKKVHDY-------------------FL--QS 306 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~~~p-d----~~ty~~Ll~~~~~~g~~~~A~~l~~~-------------------m~--~~ 306 (623)
|..+.+.|+|-...++++.|-.- | ..+|+.+...++....+++|.+.|.. +. ..
T Consensus 767 ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~ 846 (1189)
T KOG2041|consen 767 IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLAR 846 (1189)
T ss_pred HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHH
Confidence 44455666666666666543221 1 13455555555544444444444332 11 11
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044791 307 TIRGDLVLNNKVIEMYGKCGSMTDARRVFDH 337 (623)
Q Consensus 307 g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~ 337 (623)
.++-|....-.|..++.+.|.-++|.+.|-+
T Consensus 847 ~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 847 TLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred hcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 1233444445556666666666666655543
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.95 E-value=0.089 Score=53.55 Aligned_cols=96 Identities=11% Similarity=0.049 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhc--CCh----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--CCHHHHHH
Q 044791 312 LVLNNKVIEMYGKCGSMTDARRVFDHMAD--RSM----DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ--PNEQTFLA 383 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~~A~~lf~~m~~--~~~----~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~--Pd~~ty~~ 383 (623)
...|...+..+.+.|++++|+..|+.+.+ ++. ..+-.+..+|...|++++|...|+.+.+.-.. -....+-.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 45666666666777999999999998875 222 36778888899999999999999999865211 12344455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 384 VFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 384 li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
+...+...|+.++|..+|+.+++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666777889999999999988865
No 206
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.93 E-value=0.021 Score=44.68 Aligned_cols=49 Identities=20% Similarity=0.172 Sum_probs=18.4
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
.|++++|+++|+++.+.... +...+..+..+|.+.|++++|..+++.+.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444333111 23333334444444444444444444333
No 207
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=95.93 E-value=0.013 Score=45.84 Aligned_cols=64 Identities=23% Similarity=0.243 Sum_probs=50.7
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 044791 389 GSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRN 455 (623)
Q Consensus 389 ~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~ 455 (623)
...|++++|+++|+.+... .| +...+..|..+|.+.|++++|.+++++.....|+...|..|+.
T Consensus 2 l~~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 4679999999999999854 34 6677778999999999999999999995556788666665543
No 208
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.93 E-value=0.029 Score=44.10 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=10.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~ 371 (623)
|..+...+...|++++|+..|++.++
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~ 31 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIE 31 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333344444444444444444333
No 209
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.93 E-value=0.58 Score=45.62 Aligned_cols=178 Identities=16% Similarity=0.132 Sum_probs=94.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHc------CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044791 249 SVADLARLCQEGKVKEAIELMDK------GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMY 322 (623)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~l~~~------~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y 322 (623)
.......+...|++++|++.|++ +-.--....-.++.++.+.|+++.|...++++++.-..-...-+...+.+.
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~ 87 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL 87 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence 33445556677777777777753 111112344566667777777777777777766642111112233333333
Q ss_pred HHcCCHHHHHHHHHHhhcCCh-------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 044791 323 GKCGSMTDARRVFDHMADRSM-------DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIE 395 (623)
Q Consensus 323 ~k~g~~~~A~~lf~~m~~~~~-------~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e 395 (623)
+......... +..+|. ..+..+|.-|=.....++|...+.++.+. =...-..+...|.+.|.+.
T Consensus 88 ~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 88 SYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HH
T ss_pred HHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHH
Confidence 2222222211 112221 25666666666666666666655555432 0111223567789999999
Q ss_pred HHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHH
Q 044791 396 EAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQ 435 (623)
Q Consensus 396 ~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~ 435 (623)
.|..-++.+++.+.-.+ .....-.|+.+|.+.|..+.|..
T Consensus 159 aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 159 AAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 99999999997643322 12355678888999998885543
No 210
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=95.90 E-value=0.025 Score=44.45 Aligned_cols=60 Identities=17% Similarity=0.166 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHh
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG-SMTDARRVFDHM 338 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g-~~~~A~~lf~~m 338 (623)
.+|..+...+...|++++|+..|++.++.. +-+...|..+..+|.+.| ++++|++.|++.
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 344444444444444444444444444432 113344444444444444 344444444443
No 211
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.84 E-value=0.48 Score=51.41 Aligned_cols=55 Identities=15% Similarity=0.126 Sum_probs=25.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 385 FSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
..++.+.|+.++|.++|.+|.+.....-+..+...||.+|...+.+.++..++.+
T Consensus 266 AmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 266 AMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred HHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3334445555555555555543322211223344455555555555555555544
No 212
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.71 E-value=2.3 Score=48.32 Aligned_cols=308 Identities=13% Similarity=0.026 Sum_probs=170.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCC---HHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKAD---ASCFYTLFELCGNPKWY--ENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd---~~ty~~Ll~~~~~~g~~--~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~ 325 (623)
.+|..+...+.+..|+++-+-.-.|. ...|.....-+.+..+. +++.+..++=++... -+..+|..+..-...+
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~ 520 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQE 520 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhc
Confidence 55667777777777777654211222 34455555555544221 223333322222222 3456788888888889
Q ss_pred CCHHHHHHHHHHhhcC--------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC----------CCCH-HHHHHHHH
Q 044791 326 GSMTDARRVFDHMADR--------SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGL----------QPNE-QTFLAVFS 386 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~--------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~----------~Pd~-~ty~~li~ 386 (623)
|+.+-|..+++.=... +..-+...+.-+...|+.+-...++-.|+.+-. .|.. -.|.-+++
T Consensus 521 GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r 600 (829)
T KOG2280|consen 521 GRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMR 600 (829)
T ss_pred CcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHH
Confidence 9999999988743221 222566777777888888888777777664311 1111 11111111
Q ss_pred --------HHHhcCCHHHHHHHHHHH--Hh---hcCCCCCccchhhHHHHHHhcCCHHHHH----------HHHHhhCC-
Q 044791 387 --------ACGSADAIEEAFIHFESM--KS---EFGISPGTEHYLGLVGVLGKCGHLFEAQ----------QFIEQKLP- 442 (623)
Q Consensus 387 --------a~~~~g~~e~A~~l~~~m--~~---~~g~~p~~~ty~~Li~~~~k~g~~e~A~----------~lf~~~m~- 442 (623)
.+..+++.-.+...|..- .+ ..+..|+. .....++.+.....-.. .+++. ++
T Consensus 601 ~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~-Le~ 676 (829)
T KOG2280|consen 601 HQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALEDQMKLLKLQRT-LED 676 (829)
T ss_pred hhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHH-HHH
Confidence 111222222222222110 00 01222222 22334444443311111 11111 22
Q ss_pred ---CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHH
Q 044791 443 ---FEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDE 519 (623)
Q Consensus 443 ---~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~e 519 (623)
..-...+.+--+.-+...|....|.++...++- ||+..|..=+.+++..++| ++
T Consensus 677 q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki---------------pdKr~~wLk~~aLa~~~kw--------ee 733 (829)
T KOG2280|consen 677 QFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI---------------PDKRLWWLKLTALADIKKW--------EE 733 (829)
T ss_pred HhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC---------------cchhhHHHHHHHHHhhhhH--------HH
Confidence 111223444455556667888766666665533 8899999999999999998 34
Q ss_pred HHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCCCCChhHHHhhHhhhcchhHHHHHHHHHhCC
Q 044791 520 KLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNLRVCGDCHNAIKIMSRIVGR 599 (623)
Q Consensus 520 al~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~~~~~~i~~~l~~~g~~~~a~~l~~~~~~~ 599 (623)
-+++-+.++. ..-|.-.++ .+.+.|..+||.+.+.+..+.. .-.+++..+|+..+|.++..+-.+.
T Consensus 734 LekfAkskks------PIGy~PFVe-------~c~~~~n~~EA~KYiprv~~l~-ekv~ay~~~~~~~eAad~A~~~rd~ 799 (829)
T KOG2280|consen 734 LEKFAKSKKS------PIGYLPFVE-------ACLKQGNKDEAKKYIPRVGGLQ-EKVKAYLRVGDVKEAADLAAEHRDG 799 (829)
T ss_pred HHHHHhccCC------CCCchhHHH-------HHHhcccHHHHhhhhhccCChH-HHHHHHHHhccHHHHHHHHHHhcCh
Confidence 4444455541 233444454 6778999999999998887755 5788999999999999977665444
Q ss_pred c
Q 044791 600 E 600 (623)
Q Consensus 600 ~ 600 (623)
+
T Consensus 800 ~ 800 (829)
T KOG2280|consen 800 A 800 (829)
T ss_pred H
Confidence 3
No 213
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.70 E-value=0.25 Score=52.44 Aligned_cols=169 Identities=11% Similarity=0.066 Sum_probs=106.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhcCCCCCccchhhHH
Q 044791 348 LMINGYADNGLGDEGLQLFEQMRKLG---LQPNEQTFLAVFSACGS---ADAIEEAFIHFESMKSEFGISPGTEHYLGLV 421 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l~~eM~~~g---~~Pd~~ty~~li~a~~~---~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li 421 (623)
.|+-.|....+++..+++++.|...- +.-....--...-|+.+ .|+.++|+.++..+... .-.++..+|..+.
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL~G 224 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGLLG 224 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHHHH
Confidence 45556999999999999999998751 11111111233445566 89999999999996544 5556777888777
Q ss_pred HHHHh---------cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-hh---HHHHHHHHHHh-cCCCCCCCCCCC
Q 044791 422 GVLGK---------CGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGD-ID---LEDHAEELMVD-LDPSKADPKKIP 487 (623)
Q Consensus 422 ~~~~k---------~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~-~~---~A~~~~~~~~~-m~~~~~~~~~~~ 487 (623)
..|-. ...+++|++.|.++.++.||..+=-.++..+...|. .+ +..++.-.+.. +..++. .
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~-----~ 299 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS-----L 299 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc-----c
Confidence 66543 235889999999988888876433333333334443 22 12222211111 112222 1
Q ss_pred CCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHC
Q 044791 488 TPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKES 530 (623)
Q Consensus 488 ~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~ 530 (623)
+...+..-+.++++++.-.++. ++|.+..+.|.+.
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~--------~ka~~a~e~~~~l 334 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDY--------EKAIQAAEKAFKL 334 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCH--------HHHHHHHHHHhhc
Confidence 2236677777889998888887 6888888888755
No 214
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.68 E-value=0.025 Score=59.20 Aligned_cols=257 Identities=10% Similarity=-0.022 Sum_probs=158.4
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--------CCCC-
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--------GVKA- 275 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--------~~~p- 275 (623)
+.|++..-+.+|+.....+.. .+. ....+|.-|..+|.-.+++++|+++... |-+.
T Consensus 29 k~gdcraGv~ff~aA~qvGTe--Dl~-------------tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklG 93 (639)
T KOG1130|consen 29 KMGDCRAGVDFFKAALQVGTE--DLS-------------TLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLG 93 (639)
T ss_pred hccchhhhHHHHHHHHHhcch--HHH-------------HHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhc
Confidence 678888888888876332110 000 0123455677788888899999987521 1111
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHH----HHHcCCC-CCHHHHHHHHHHHHHcCC--------------------HHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDY----FLQSTIR-GDLVLNNKVIEMYGKCGS--------------------MTD 330 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~----m~~~g~~-pd~~~y~~Li~~y~k~g~--------------------~~~ 330 (623)
...+...|.+.+--.|.+++|+-+..+ ..+.|-. .....+-.|.+.|...|+ ++.
T Consensus 94 EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~ 173 (639)
T KOG1130|consen 94 EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN 173 (639)
T ss_pred cccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence 112333444455555666666544322 2222211 123455567778876553 334
Q ss_pred HHHHHHHhhc----C-Ch----HHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCC-CHHHHHHHHHHHHhcCCHHH
Q 044791 331 ARRVFDHMAD----R-SM----DSWHLMINGYADNGLGDEGLQLFEQMRK----LGLQP-NEQTFLAVFSACGSADAIEE 396 (623)
Q Consensus 331 A~~lf~~m~~----~-~~----~tyn~Li~~~~~~g~~eeA~~l~~eM~~----~g~~P-d~~ty~~li~a~~~~g~~e~ 396 (623)
|.+.|.+=.+ . |. .+|..|.+.|.-.|+++.|+...+.-++ -|-+. ....+..|..++.-.|.++.
T Consensus 174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence 5555543221 1 11 2788899999999999999987665432 23222 23578889999999999999
Q ss_pred HHHHHHHHHhh---c-CCCCCccchhhHHHHHHhcCCHHHHHHHHHh--hC----C-CCCCHHHHHHHHHHHHHcCChhH
Q 044791 397 AFIHFESMKSE---F-GISPGTEHYLGLVGVLGKCGHLFEAQQFIEQ--KL----P-FEPTAEFWEALRNYARIHGDIDL 465 (623)
Q Consensus 397 A~~l~~~m~~~---~-g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~--~m----~-~~Pd~~ty~~Li~a~~~~g~~~~ 465 (623)
|.+.|+....- . .......+.-+|.+.|.-..++++|+.++.+ ++ + ..-....|-+|.++|...|..+.
T Consensus 254 A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k 333 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK 333 (639)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence 99998765421 1 1223444566788888888899999999887 22 1 22245788889999999999888
Q ss_pred HHHHHHHHHhc
Q 044791 466 EDHAEELMVDL 476 (623)
Q Consensus 466 A~~~~~~~~~m 476 (623)
|....+.-.+.
T Consensus 334 Al~fae~hl~~ 344 (639)
T KOG1130|consen 334 ALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHH
Confidence 87766665443
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.65 E-value=0.02 Score=46.26 Aligned_cols=59 Identities=15% Similarity=0.237 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---------C-hHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044791 312 LVLNNKVIEMYGKCGSMTDARRVFDHMADR---------S-MDSWHLMINGYADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---------~-~~tyn~Li~~~~~~g~~eeA~~l~~eM~ 370 (623)
..+|+.+..+|.+.|++++|+..|++..+. + ..+|+.|..+|...|++++|+++|++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356778888888888888888888776531 1 2377888888888888888888887754
No 216
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.65 E-value=0.095 Score=57.75 Aligned_cols=84 Identities=18% Similarity=0.072 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC-CCCCHH----------
Q 044791 380 TFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-FEPTAE---------- 448 (623)
Q Consensus 380 ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-~~Pd~~---------- 448 (623)
+...+...+.+...+..|-++|..|-. ...++++....++|.+|..+-++ .. ..+|+.
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~-hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEK-HPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhh-CccccccccchHHHHhhhh
Confidence 444444445555666677777766642 13466777777777777777777 43 444441
Q ss_pred -HHHHHHHHHHHcCChhHHHHHHHHHH
Q 044791 449 -FWEALRNYARIHGDIDLEDHAEELMV 474 (623)
Q Consensus 449 -ty~~Li~a~~~~g~~~~A~~~~~~~~ 474 (623)
-|.-.-.+|.+.|+-.+|..+++.+.
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 12223346667777776666655543
No 217
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.63 E-value=0.084 Score=47.35 Aligned_cols=52 Identities=17% Similarity=0.237 Sum_probs=39.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHH
Q 044791 373 GLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVL 424 (623)
Q Consensus 373 g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~ 424 (623)
.+.|+..+..+++.+|+..|++..|+++++...+.+++..+..+|..|+.=.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3567788888888888888888888888888887777777777777776543
No 218
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.63 E-value=0.12 Score=55.77 Aligned_cols=61 Identities=7% Similarity=-0.205 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDL----VLNNKVIEMYGKCGSMTDARRVFDHMAD 340 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~~y~~Li~~y~k~g~~~~A~~lf~~m~~ 340 (623)
..++.+..+|.+.|++++|+..|++.++. .|+. .+|.++..+|.+.|++++|+..|++..+
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555555555555555542 2331 2355555555555555555555555444
No 219
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.63 E-value=0.87 Score=48.23 Aligned_cols=115 Identities=11% Similarity=0.011 Sum_probs=88.3
Q ss_pred HcCCHHHHHHHHHcCCCCCHHHHH---------------HHHHHHhCCCCHHHHHHHHHHHHHc---CCCCCHHHHHHHH
Q 044791 258 QEGKVKEAIELMDKGVKADASCFY---------------TLFELCGNPKWYENAKKVHDYFLQS---TIRGDLVLNNKVI 319 (623)
Q Consensus 258 ~~g~~~~A~~l~~~~~~pd~~ty~---------------~Ll~~~~~~g~~~~A~~l~~~m~~~---g~~pd~~~y~~Li 319 (623)
-.++.+.|...|.+++..|..... .-.+-..+.|++.+|.+.|.+.+.. .+.+++..|....
T Consensus 215 y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra 294 (486)
T KOG0550|consen 215 YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRA 294 (486)
T ss_pred cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhH
Confidence 467888999999887776653322 1223446789999999999999875 3556778888888
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCChH---HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 320 EMYGKCGSMTDARRVFDHMADRSMD---SWHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 320 ~~y~k~g~~~~A~~lf~~m~~~~~~---tyn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
.+..+.|+.++|+.--++..+.|.. .|-.-..++...++|++|.+-|+...+.
T Consensus 295 ~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 295 LVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999988887765 4444455677788899999999887764
No 220
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.45 E-value=0.57 Score=51.93 Aligned_cols=23 Identities=17% Similarity=-0.078 Sum_probs=11.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh
Q 044791 384 VFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 384 li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
+.-.+.-.+++++|.+.|..+.+
T Consensus 311 l~w~~~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 311 LAWCHMFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHHHHHHchHHHHHHHHHHHHh
Confidence 33344444555555555555543
No 221
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=95.38 E-value=0.029 Score=58.22 Aligned_cols=8 Identities=38% Similarity=0.663 Sum_probs=3.4
Q ss_pred CCCCCCcc
Q 044791 74 RAFPDQSN 81 (623)
Q Consensus 74 ~~~~~~~~ 81 (623)
..+|.|.+
T Consensus 400 ~q~~~q~y 407 (462)
T KOG2199|consen 400 AQYPSQSY 407 (462)
T ss_pred cccCcccC
Confidence 33444444
No 222
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.34 E-value=0.077 Score=53.18 Aligned_cols=98 Identities=15% Similarity=0.242 Sum_probs=73.1
Q ss_pred HHHHHHHhh--cCChHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----------
Q 044791 331 ARRVFDHMA--DRSMDSWHLMINGYADN-----GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD----------- 392 (623)
Q Consensus 331 A~~lf~~m~--~~~~~tyn~Li~~~~~~-----g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g----------- 392 (623)
.+..|.... ++|-.+|-.++..+... +.+|-....++.|++-|++-|..+|+.||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555554 56666777777766543 556777778888888899889999988888765432
Q ss_pred -----CHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCC
Q 044791 393 -----AIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGH 429 (623)
Q Consensus 393 -----~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~ 429 (623)
.-+-++.++++|. .+|+.||-++-..||+++++.|-
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccc
Confidence 2356789999998 55999999999999999998775
No 223
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.07 E-value=0.25 Score=52.54 Aligned_cols=56 Identities=18% Similarity=0.275 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQST-IRGDLVLNNKVIEMYGKCGSMTDARRVFD 336 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~~y~~Li~~y~k~g~~~~A~~lf~ 336 (623)
|..+|++..+...++.|..+|-++.+.| +.+++++++++|.-+|. |+..-|.++|+
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ife 456 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFE 456 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHH
Confidence 4444444444444555555555555544 33444555555544432 34444444444
No 224
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.07 E-value=0.93 Score=41.06 Aligned_cols=44 Identities=23% Similarity=0.266 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044791 281 YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 281 ~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~ 325 (623)
..++..+...+.......+++.+.+.+. .+...++.||..|++.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 3445555555555666666665555542 3555555566665554
No 225
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.98 E-value=0.58 Score=42.44 Aligned_cols=122 Identities=15% Similarity=0.221 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044791 316 NKVIEMYGKCGSMTDARRVFDHMADRS---MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD 392 (623)
Q Consensus 316 ~~Li~~y~k~g~~~~A~~lf~~m~~~~---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g 392 (623)
..+|..+.+.+....+..+++.+...+ ...+|.+|..|++.+ .++.++.+.. ..+.+....+++.|.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 345666666666677777766665432 336666777776653 2444444442 123334444666666667
Q ss_pred CHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhc-CCHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 044791 393 AIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKC-GHLFEAQQFIEQKLPFEPTAEFWEALRNYAR 458 (623)
Q Consensus 393 ~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~-g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~ 458 (623)
.++++..++..+.. |...+..+... ++.+.|.+++.+ .-+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~----~~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK----QNNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh----CCCHHHHHHHHHHHH
Confidence 77777766665531 22233444433 667777777766 235556666666554
No 226
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.98 E-value=0.073 Score=42.21 Aligned_cols=56 Identities=20% Similarity=0.269 Sum_probs=26.3
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 044791 423 VLGKCGHLFEAQQFIEQKLPFEPT-AEFWEALRNYARIHGDIDLEDHAEELMVDLDP 478 (623)
Q Consensus 423 ~~~k~g~~e~A~~lf~~~m~~~Pd-~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~ 478 (623)
.|.+.+++++|.+++++++...|+ ...|......+...|++++|.+.++.+.++.+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 344455555555555554443332 23344444444555555555555555544443
No 227
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=94.85 E-value=0.085 Score=41.82 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=26.3
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 352 GYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 352 ~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
.|.+.+++++|+++++++++.+.. +...+.....++...|++++|.+.|+...
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 445555555555555555554211 33344444445555555555555555554
No 228
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.75 E-value=0.84 Score=49.33 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=56.0
Q ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCCH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 044791 242 GDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKADA----SCFYTLFELCGNPKWYENAKKVHDYFLQS 306 (623)
Q Consensus 242 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~ 306 (623)
.+.....++++..+|.+.|++++|+..|++ .+.|+. .+|..+..+|...|++++|++.+++.++.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344667788999999999999999999987 455764 35999999999999999999999999885
No 229
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.68 E-value=0.66 Score=46.73 Aligned_cols=118 Identities=16% Similarity=0.211 Sum_probs=82.5
Q ss_pred CCCHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHH
Q 044791 274 KADASCFYTLFELCGN-----PKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHL 348 (623)
Q Consensus 274 ~pd~~ty~~Ll~~~~~-----~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~ 348 (623)
+.|-.+|-..+..+.. .+.++-....++.|.+-|+..|..+|+.||+.+-|..-+-. .+|...
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~--nvfQ~~---------- 131 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQ--NVFQKV---------- 131 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccH--HHHHHH----------
Confidence 4566666666665543 46777777788899999999999999999998876443221 122211
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHh
Q 044791 349 MINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADA-IEEAFIHFESMKS 406 (623)
Q Consensus 349 Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~-~e~A~~l~~~m~~ 406 (623)
.--|-+ +-+-+++++++|...|+.||-.+-..|+.++++.+- ..+..++.-.|-+
T Consensus 132 -F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 132 -FLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred -HhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 111222 235688999999999999999999999999998775 3445555555553
No 230
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.65 E-value=7.1 Score=41.34 Aligned_cols=187 Identities=16% Similarity=0.132 Sum_probs=101.1
Q ss_pred cCCHHHHHHHHHc---CCCCCHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHH
Q 044791 259 EGKVKEAIELMDK---GVKADASCFYTLFELC--GNPKWYENAKKVHDYFLQSTIRGDLVLN--NKVIEMYGKCGSMTDA 331 (623)
Q Consensus 259 ~g~~~~A~~l~~~---~~~pd~~ty~~Ll~~~--~~~g~~~~A~~l~~~m~~~g~~pd~~~y--~~Li~~y~k~g~~~~A 331 (623)
.|+-..|.++-.+ -+.-|......|+.+- .-.|++++|.+-|+-|... |..... ..|.-.--+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 4555555555432 3445555555555543 3468889999999888662 222221 2233333466788888
Q ss_pred HHHHHHhhcC--ChH-HHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHH--HHHHHHHHHHh---cCCHHHHHHHHH
Q 044791 332 RRVFDHMADR--SMD-SWHLMINGYADNGLGDEGLQLFEQMRKLG-LQPNEQ--TFLAVFSACGS---ADAIEEAFIHFE 402 (623)
Q Consensus 332 ~~lf~~m~~~--~~~-tyn~Li~~~~~~g~~eeA~~l~~eM~~~g-~~Pd~~--ty~~li~a~~~---~g~~e~A~~l~~ 402 (623)
...-++.-+. ... .+..++...|..|+++.|+++++.-++.. +.+++. .--.|+.+-+. .-+...|...-.
T Consensus 174 r~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~ 253 (531)
T COG3898 174 RHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL 253 (531)
T ss_pred HHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 7777766443 222 78888899999999999999988776433 344432 11222222111 112233333222
Q ss_pred HHHhhcCCCCCccchhh-HHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHH
Q 044791 403 SMKSEFGISPGTEHYLG-LVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWE 451 (623)
Q Consensus 403 ~m~~~~g~~p~~~ty~~-Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~ 451 (623)
+.. .+.||..--.. -..+|.+.|++.++-.+++.+.+.+|....+.
T Consensus 254 ~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~ 300 (531)
T COG3898 254 EAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL 300 (531)
T ss_pred HHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH
Confidence 222 44444332211 12446666666666666666445555554443
No 231
>PRK11906 transcriptional regulator; Provisional
Probab=94.63 E-value=1.9 Score=46.75 Aligned_cols=154 Identities=14% Similarity=0.106 Sum_probs=103.3
Q ss_pred HHH--HHHHHHHHHc-----CCHHHHHHHHHHhh---cCC---hHHHHHHHHHHHH---------cCChHHHHHHHHHHH
Q 044791 313 VLN--NKVIEMYGKC-----GSMTDARRVFDHMA---DRS---MDSWHLMINGYAD---------NGLGDEGLQLFEQMR 370 (623)
Q Consensus 313 ~~y--~~Li~~y~k~-----g~~~~A~~lf~~m~---~~~---~~tyn~Li~~~~~---------~g~~eeA~~l~~eM~ 370 (623)
..| ..++.+.... -..+.|+.+|.+.. +.| ...|..+..++.. ..+..+|.++-++.+
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 456 6666666653 24678889999888 555 3344444443322 234567777777777
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc-cchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH--
Q 044791 371 KLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGT-EHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-- 447 (623)
Q Consensus 371 ~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~-~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-- 447 (623)
+.+- -|..+...+..+....++++.|...|++.. .+.||. .+|......+.-+|+.++|.+.+++++...|.-
T Consensus 332 eld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 332 DITT-VDGKILAIMGLITGLSGQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred hcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 7653 377888888888888888999999999887 677763 344444555666899999999999988877744
Q ss_pred -HHHHHHHHHHHHcCChhHHHHHHH
Q 044791 448 -EFWEALRNYARIHGDIDLEDHAEE 471 (623)
Q Consensus 448 -~ty~~Li~a~~~~g~~~~A~~~~~ 471 (623)
......|+.|+.+ .+|.|.+.+-
T Consensus 408 ~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 408 AVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHHHHcCC-chhhhHHHHh
Confidence 3444455566644 4555555543
No 232
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.43 E-value=1.3 Score=48.30 Aligned_cols=143 Identities=10% Similarity=0.068 Sum_probs=76.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHcC--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 044791 251 ADLARLCQEGKVKEAIELMDKG--VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSM 328 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~--~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~ 328 (623)
.+|...-+..+...-+++-++. +.||..+.-+|+ +--....+.+|+++|++.++.|-. ..-...... ..|.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~--~lg~s~~~~---~~g~- 245 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEA--SLGKSQFLQ---HHGH- 245 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHH--hhchhhhhh---cccc-
Confidence 4455555666666655555543 345543322222 222345689999999998876411 000000110 1111
Q ss_pred HHHHHHHHHhhcCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044791 329 TDARRVFDHMADRSM----DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFES 403 (623)
Q Consensus 329 ~~A~~lf~~m~~~~~----~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~ 403 (623)
.++.+..++. ..-.-|..++.+.|+.+||+++|++|.+..-.- .....-.||.++...+.+.++..++.+
T Consensus 246 -----~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 246 -----FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred -----hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1111222221 122335556667788888888888887543221 233566777888888888888887776
Q ss_pred HH
Q 044791 404 MK 405 (623)
Q Consensus 404 m~ 405 (623)
..
T Consensus 321 Yd 322 (539)
T PF04184_consen 321 YD 322 (539)
T ss_pred hc
Confidence 53
No 233
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.37 E-value=2.8 Score=41.90 Aligned_cols=60 Identities=18% Similarity=0.104 Sum_probs=44.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 420 LVGVLGKCGHLFEAQQFIEQKLPFEPTA----EFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 420 Li~~~~k~g~~e~A~~lf~~~m~~~Pd~----~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
+..-|.+.|.+..|..-++++++--|+. ...-.|..+|...|-.++|..+.+.+..-.++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 4566888899988888888855533332 45566777899999999998888888765444
No 234
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.34 E-value=1 Score=44.50 Aligned_cols=193 Identities=19% Similarity=0.182 Sum_probs=107.5
Q ss_pred HHHHHHcCCHHHHHHHHHc---CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 044791 253 LARLCQEGKVKEAIELMDK---GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMT 329 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~---~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~ 329 (623)
-.+|....++++|-..+.+ +..-+...|.. ++.++.|.-+.++|.+. .--+..|+.-..+|..+|..+
T Consensus 38 AvafRnAk~feKakdcLlkA~~~yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcc
Confidence 4456666667666665543 22233222221 22345555566665552 222455667777777777777
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc---C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044791 330 DARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKL---G--LQPNEQTFLAVFSACGSADAIEEAFIHFESM 404 (623)
Q Consensus 330 ~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~---g--~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m 404 (623)
.|-..+++.-+ ..++-+.++|+.+|.+.... + ...-..-|..+-+.+.+..++++|-..|..-
T Consensus 109 tAAmaleKAak------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 109 TAAMALEKAAK------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred hHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 77766665421 23444566777776665432 1 0111223444555666777777776555432
Q ss_pred HhhcCCCCCc-------cchhhHHHHHHhcCCHHHHHHHHHhhC--C--CCC-CHHHHHHHHHHHHHcCChhHHHHHH
Q 044791 405 KSEFGISPGT-------EHYLGLVGVLGKCGHLFEAQQFIEQKL--P--FEP-TAEFWEALRNYARIHGDIDLEDHAE 470 (623)
Q Consensus 405 ~~~~g~~p~~-------~ty~~Li~~~~k~g~~e~A~~lf~~~m--~--~~P-d~~ty~~Li~a~~~~g~~~~A~~~~ 470 (623)
. ++..-. ..|.+.|-.|....++..|+.+|+..- + ..+ +..+...||.+|- .||.|.+..+.
T Consensus 177 ~---~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 177 G---VAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred h---hHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 2 211111 234555666777789999999999822 2 222 5578888888885 67877554443
No 235
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.49 Score=49.99 Aligned_cols=163 Identities=12% Similarity=-0.038 Sum_probs=100.1
Q ss_pred HHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHhhcCChH----------
Q 044791 278 SCFYTLFE-LCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYG--KCGSMTDARRVFDHMADRSMD---------- 344 (623)
Q Consensus 278 ~ty~~Ll~-~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~--k~g~~~~A~~lf~~m~~~~~~---------- 344 (623)
.+|-.|-. ++.-.|+.++|..+--..++.. ....+..++++.| -.++.+.|...|++-...|..
T Consensus 169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~ 245 (486)
T KOG0550|consen 169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMM 245 (486)
T ss_pred hHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhh
Confidence 44444333 4455678888887766666642 1233444444433 457788888888877665433
Q ss_pred -----HHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-cc
Q 044791 345 -----SWHLMINGYADNGLGDEGLQLFEQMRKL---GLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TE 415 (623)
Q Consensus 345 -----tyn~Li~~~~~~g~~eeA~~l~~eM~~~---g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~ 415 (623)
.|..=.+-..+.|.+.+|.+.|.+.+.. .+++++..|.....+..+.|++++|+.--++.. .+++. +.
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syik 322 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIK 322 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHH
Confidence 2333344467788888888888888753 355566777777777888888888887776655 33322 11
Q ss_pred chhhHHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 044791 416 HYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT 446 (623)
Q Consensus 416 ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd 446 (623)
.|..-..++...++|++|.+-|+.+|....+
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 1211122334457788888888887764444
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.26 E-value=1 Score=49.98 Aligned_cols=180 Identities=17% Similarity=0.105 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-Ch---------HHHHHHHHHHHH----cCC
Q 044791 293 YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR-SM---------DSWHLMINGYAD----NGL 358 (623)
Q Consensus 293 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-~~---------~tyn~Li~~~~~----~g~ 358 (623)
+.-..-+|.-++.. ++|. +..|+...+-.|+-+.+++++.+..+. ++ ..|+.++..++. ...
T Consensus 173 v~~G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~ 248 (468)
T PF10300_consen 173 VYFGFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVP 248 (468)
T ss_pred HHHHHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCC
Confidence 55667778888775 5555 335788888889999999999876553 22 167777776655 456
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhcCCC--CCccchhhHHHHHHhcCCHHHHHH
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAV-FSACGSADAIEEAFIHFESMKSEFGIS--PGTEHYLGLVGVLGKCGHLFEAQQ 435 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~l-i~a~~~~g~~e~A~~l~~~m~~~~g~~--p~~~ty~~Li~~~~k~g~~e~A~~ 435 (623)
.++|.++++++.+. -|+...|... .+.+...|++++|++.|++......-. .....+--+.-.+.-..++++|.+
T Consensus 249 ~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 249 LEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 88999999999986 6777766544 334667899999999999766321111 133344456777888999999999
Q ss_pred HHHhhCCCCC-CHHHHHHHHHH-HHHcCCh-------hHHHHHHHHHHhcCC
Q 044791 436 FIEQKLPFEP-TAEFWEALRNY-ARIHGDI-------DLEDHAEELMVDLDP 478 (623)
Q Consensus 436 lf~~~m~~~P-d~~ty~~Li~a-~~~~g~~-------~~A~~~~~~~~~m~~ 478 (623)
.|.+...... .-.+|..+..+ +...|+. ++|.+.++.+-.+..
T Consensus 327 ~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 327 YFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 9999444333 33455555543 4467777 666666666655544
No 237
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=93.98 E-value=0.95 Score=46.92 Aligned_cols=126 Identities=11% Similarity=0.227 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--c----CCHHHHHHHHHHhhcC-------ChHHHHHHHHHHHHcCC-
Q 044791 293 YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK--C----GSMTDARRVFDHMADR-------SMDSWHLMINGYADNGL- 358 (623)
Q Consensus 293 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k--~----g~~~~A~~lf~~m~~~-------~~~tyn~Li~~~~~~g~- 358 (623)
+++.+.+++.|++.|+.-+.++|-+..-.+.. . -.+.+|.++|+.|++. +-.++.+|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 56777889999999999888777664433333 2 2366899999999863 33466666555 2223
Q ss_pred ---hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcCCCCCccchhhHH
Q 044791 359 ---GDEGLQLFEQMRKLGLQPN-EQTFLAVFSACGSADA---IEEAFIHFESMKSEFGISPGTEHYLGLV 421 (623)
Q Consensus 359 ---~eeA~~l~~eM~~~g~~Pd-~~ty~~li~a~~~~g~---~e~A~~l~~~m~~~~g~~p~~~ty~~Li 421 (623)
.++++.+|+.+.+.|+..+ ..-+.+-|-+++.... +..+.++++.+.++ |+++....|..|.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 4677888999998887664 3344444445544322 45778889998877 9999888887653
No 238
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.88 E-value=0.81 Score=46.65 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=63.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCC-CHHHHH
Q 044791 310 GDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADN---GLGDEGLQLFEQMRKLGLQP-NEQTFL 382 (623)
Q Consensus 310 pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~---g~~eeA~~l~~eM~~~g~~P-d~~ty~ 382 (623)
-|...|-.|...|...|+++.|...|....+ .+...+..+..++... .+-.+|..+|++++.. .| |+.+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHHHHH
Confidence 3667777777777777777777777766543 3444455444443332 2245667777777764 33 344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHH
Q 044791 383 AVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVG 422 (623)
Q Consensus 383 ~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~ 422 (623)
.|...+...|++.+|...|+.|.. ..|....+..+|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~---~lp~~~~rr~~ie 268 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLD---LLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh---cCCCCCchHHHHH
Confidence 555566777777777777777773 3333333444443
No 239
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=93.88 E-value=3.7 Score=41.14 Aligned_cols=166 Identities=11% Similarity=0.088 Sum_probs=83.9
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc-----CCCCCHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK-----GVKADASC 279 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-----~~~pd~~t 279 (623)
+.|+|++|.+.|+.+.. ..| .++..-.+...++-++-+.+++++|+..+++ +-.||. .
T Consensus 46 ~~gn~~~A~~~fe~l~~--~~p--------------~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-d 108 (254)
T COG4105 46 QKGNYEEAIKYFEALDS--RHP--------------FSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-D 108 (254)
T ss_pred hcCCHHHHHHHHHHHHH--cCC--------------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-h
Confidence 88999999999998843 111 1122233444666777788888888877764 333443 2
Q ss_pred HHHHHHHHhCC-------CCHHHHH---HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHH-H-H
Q 044791 280 FYTLFELCGNP-------KWYENAK---KVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDS-W-H 347 (623)
Q Consensus 280 y~~Ll~~~~~~-------g~~~~A~---~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~t-y-n 347 (623)
|..-|.+++.- .|...+. .-|++++.. -||. .=..+|......+. |... + -
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~--d~LA~~Em 171 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLN--DALAGHEM 171 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHH--HHHHHHHH
Confidence 33333333321 2222222 223333322 1111 11111111111111 1111 1 1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 348 LMINGYADNGLGDEGLQLFEQMRKLGLQPN---EQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd---~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
.+..-|.+.|.+..|..-+++|++. ..-+ ...+-.|..+|...|..++|...-.-+.
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 2345577778888888888888765 2111 2244455666777777777766655554
No 240
>PRK15331 chaperone protein SicA; Provisional
Probab=93.86 E-value=1.2 Score=41.58 Aligned_cols=81 Identities=11% Similarity=-0.031 Sum_probs=34.3
Q ss_pred HcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044791 324 KCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIH 400 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l 400 (623)
..|++++|..+|.-+..- +..-|..|..+|-..+++++|+.+|......+. -|...+--+..++...|+.+.|+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHHH
Confidence 345555555555544321 222333444444444555555555444433221 1222233333444444455555544
Q ss_pred HHHHH
Q 044791 401 FESMK 405 (623)
Q Consensus 401 ~~~m~ 405 (623)
|+...
T Consensus 128 f~~a~ 132 (165)
T PRK15331 128 FELVN 132 (165)
T ss_pred HHHHH
Confidence 44444
No 241
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.80 E-value=0.98 Score=40.50 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=13.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 044791 249 SVADLARLCQEGKVKEAIELMD 270 (623)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~l~~ 270 (623)
+.++|.++++.|+++....+++
T Consensus 5 ~~~ii~al~r~g~~~~i~~~i~ 26 (126)
T PF12921_consen 5 LCNIIYALGRSGQLDSIKSYIK 26 (126)
T ss_pred HHHHHHHHhhcCCHHHHHHHHH
Confidence 3466666666666666666654
No 242
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=3 Score=42.61 Aligned_cols=111 Identities=16% Similarity=0.170 Sum_probs=72.5
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhcCCCC-Cccch
Q 044791 342 SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS---ADAIEEAFIHFESMKSEFGISP-GTEHY 417 (623)
Q Consensus 342 ~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~---~g~~e~A~~l~~~m~~~~g~~p-~~~ty 417 (623)
|+..|-.|...|...|+++.|..-|....+.- ..+...+..+..++.. ..+-.++..+|+++. ..+| |+.+-
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al---~~D~~~iral 230 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQAL---ALDPANIRAL 230 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH---hcCCccHHHH
Confidence 66688888888888888888888888877641 2234444444444333 234567778888877 3455 44455
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 044791 418 LGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNY 456 (623)
Q Consensus 418 ~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a 456 (623)
.-|...+...|++.+|...|+.++..-|....+..+|..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~ 269 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 556667777888888888888855655655566666553
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.73 E-value=1.6 Score=45.53 Aligned_cols=192 Identities=12% Similarity=0.032 Sum_probs=122.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHc------CCC---CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCC---CHHHHHH
Q 044791 251 ADLARLCQEGKVKEAIELMDK------GVK---ADASCFYTLFELCGNPKWYENAKKVHDYFLQS-TIRG---DLVLNNK 317 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~------~~~---pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-g~~p---d~~~y~~ 317 (623)
.+..+.++.|.+++++..--. ... --..+|-.|.+++.+.-++.+++.+-..-... |..+ --....+
T Consensus 48 ~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~ 127 (518)
T KOG1941|consen 48 CLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLS 127 (518)
T ss_pred cchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhh
Confidence 567778888888888754311 111 11235666666666666666666665544432 2222 1234455
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhc-----CC----hHHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCCHHHHHH-
Q 044791 318 VIEMYGKCGSMTDARRVFDHMAD-----RS----MDSWHLMINGYADNGLGDEGLQLFEQMRK----LGLQPNEQTFLA- 383 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~-----~~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~----~g~~Pd~~ty~~- 383 (623)
|.+++.-.+-++++++.|+...+ .| ...|-.|...|.+..++++|+-+..+..+ .|+.--...|..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 77778888889999999987643 12 12788899999999999999887766653 233321223333
Q ss_pred ----HHHHHHhcCCHHHHHHHHHHHHhh---cCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 384 ----VFSACGSADAIEEAFIHFESMKSE---FGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 384 ----li~a~~~~g~~e~A~~l~~~m~~~---~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
|.-++...|++..|.+.-++..+- .|-.+ -......+.+.|...|++|.|..-|+.+|+
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 344677788888888877765532 12221 233455678889999999999999998775
No 244
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.73 E-value=0.53 Score=51.61 Aligned_cols=123 Identities=12% Similarity=0.114 Sum_probs=54.0
Q ss_pred HcCCHHHHHHHHH--Hhh-cCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044791 324 KCGSMTDARRVFD--HMA-DRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIH 400 (623)
Q Consensus 324 k~g~~~~A~~lf~--~m~-~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l 400 (623)
-.+++++|.++.+ ++. .-...-.+.++.-+-+.|..+.|+.+-.+-.. -.+...+.|+++.|.++
T Consensus 273 ~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 273 LRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEI 340 (443)
T ss_dssp HTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHH
T ss_pred HcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHH
Confidence 3456666555443 111 11222455555556666666666655433221 12223345666666554
Q ss_pred HHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 044791 401 FESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEEL 472 (623)
Q Consensus 401 ~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~ 472 (623)
-++.. +...|..|.+...+.|+++-|+++|.+ .+ -|..|+-.|...|+.+...++.+.
T Consensus 341 a~~~~-------~~~~W~~Lg~~AL~~g~~~lAe~c~~k-~~------d~~~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 341 AKELD-------DPEKWKQLGDEALRQGNIELAEECYQK-AK------DFSGLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp CCCCS-------THHHHHHHHHHHHHTTBHHHHHHHHHH-CT-------HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHhcC-------cHHHHHHHHHHHHHcCCHHHHHHHHHh-hc------CccccHHHHHHhCCHHHHHHHHHH
Confidence 43221 334566666666666666666666666 32 234444455555665543333333
No 245
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.67 E-value=0.57 Score=47.14 Aligned_cols=101 Identities=19% Similarity=0.162 Sum_probs=60.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc-cchhhHHH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQ--PNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGT-EHYLGLVG 422 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~--Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~-~ty~~Li~ 422 (623)
|+.-+.. .+.|++.+|...|.+.++.... -....+-.|..++...|++++|..+|..+.++++-.|-. ..+-.|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5554443 4455577777777777765321 112234456777777777777777777777665554433 45556666
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCH
Q 044791 423 VLGKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 423 ~~~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
...+.|+.++|..+|++.+.-.|+.
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 6677777777777777733334443
No 246
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.39 E-value=1.2 Score=48.95 Aligned_cols=157 Identities=10% Similarity=0.073 Sum_probs=101.8
Q ss_pred HHHHHHcCCHHHHHHHHH-cCCCC--CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 044791 253 LARLCQEGKVKEAIELMD-KGVKA--DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMT 329 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~-~~~~p--d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~ 329 (623)
-....-.|++++++++.+ ..+.| ...-.+.++.-+-+.|..+.|+.+..+- . .-.....++|+++
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~---------~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDP---------D---HRFELALQLGNLD 335 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-H---------H---HHHHHHHHCT-HH
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCCh---------H---HHhHHHHhcCCHH
Confidence 344556788888888776 33332 2455788888888888888888775332 1 2345567888999
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 044791 330 DARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFG 409 (623)
Q Consensus 330 ~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g 409 (623)
.|.++.++.. +...|..|.....+.|+++-|.+.|.+... |..|+--|.-.|+.+...++.+....+ |
T Consensus 336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~-~ 403 (443)
T PF04053_consen 336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER-G 403 (443)
T ss_dssp HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT-T
T ss_pred HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc-c
Confidence 9888765543 566899999999999999999998888653 556666777778887777777665543 2
Q ss_pred CCCCccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 410 ISPGTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 410 ~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
-+|....++.-.|++++..+++.+
T Consensus 404 ------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 ------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred ------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 245556666677888888888777
No 247
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.35 E-value=4.7 Score=48.13 Aligned_cols=126 Identities=17% Similarity=0.120 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHhcCCHHHHHHHH
Q 044791 326 GSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA----CGSADAIEEAFIHF 401 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a----~~~~g~~e~A~~l~ 401 (623)
+++++|+.-+.++. ...|.-.++.--+.|.+.+|+.++ .|+...+..+..+ |...+.+++|.-+|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34455544444332 223333444444445555555444 3454444444333 34456666666666
Q ss_pred HHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHH--HHHHHHHHHHcCChhHHHHHHHHH
Q 044791 402 ESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEF--WEALRNYARIHGDIDLEDHAEELM 473 (623)
Q Consensus 402 ~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~t--y~~Li~a~~~~g~~~~A~~~~~~~ 473 (623)
+..-+ ..--+.+|..+|+|.+|+.+-.+ |....|... -..|+.-+...++.-+|-++....
T Consensus 963 e~~Gk----------lekAl~a~~~~~dWr~~l~~a~q-l~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 963 ERCGK----------LEKALKAYKECGDWREALSLAAQ-LSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHhcc----------HHHHHHHHHHhccHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 54321 11235666667777777776666 443333322 245555666666655444444433
No 248
>PRK11906 transcriptional regulator; Provisional
Probab=93.23 E-value=1.7 Score=47.13 Aligned_cols=159 Identities=11% Similarity=0.082 Sum_probs=105.5
Q ss_pred HHH--HHHHHHHHHcC-----ChHHHHHHHHHHH-HcCCCCCH-HHHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 044791 344 DSW--HLMINGYADNG-----LGDEGLQLFEQMR-KLGLQPNE-QTFLAVFSACGS---------ADAIEEAFIHFESMK 405 (623)
Q Consensus 344 ~ty--n~Li~~~~~~g-----~~eeA~~l~~eM~-~~g~~Pd~-~ty~~li~a~~~---------~g~~e~A~~l~~~m~ 405 (623)
..| ..++.|..... ..+.|+.+|.+.. ...+.|+- ..|..+..++.. ..+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 567 66777765532 3578899999998 22356653 334333222211 233455556665555
Q ss_pred hhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCC
Q 044791 406 SEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADP 483 (623)
Q Consensus 406 ~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~ 483 (623)
.+.+ |......+..++.-.|+++.|..+|+++..+.||. .+|....-.+.-.|+.++|.+.++...++.|....
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~- 407 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK- 407 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH-
Confidence 4455 55556666666777888999999999988888875 45555555556689999999999998888877543
Q ss_pred CCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHH
Q 044791 484 KKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKAL 524 (623)
Q Consensus 484 ~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~ 524 (623)
......+|+.|+..+. |+|++++
T Consensus 408 ---------~~~~~~~~~~~~~~~~---------~~~~~~~ 430 (458)
T PRK11906 408 ---------AVVIKECVDMYVPNPL---------KNNIKLY 430 (458)
T ss_pred ---------HHHHHHHHHHHcCCch---------hhhHHHH
Confidence 3444566667777664 6888887
No 249
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.10 E-value=10 Score=43.30 Aligned_cols=101 Identities=14% Similarity=0.063 Sum_probs=76.0
Q ss_pred HHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 398 FIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 398 ~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
+.+.+.+..++|..-...+.+--+.-+...|...+|.++-.+ .. -||-..|-.-+.+++..++++ ++++...++.
T Consensus 668 l~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~-Fk-ipdKr~~wLk~~aLa~~~kwe---eLekfAkskk 742 (829)
T KOG2280|consen 668 LKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSD-FK-IPDKRLWWLKLTALADIKKWE---ELEKFAKSKK 742 (829)
T ss_pred HHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHh-cC-CcchhhHHHHHHHHHhhhhHH---HHHHHHhccC
Confidence 445556665666655556666677788889999999999999 77 589999999999999999998 6666665554
Q ss_pred CCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHH
Q 044791 478 PSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALN 525 (623)
Q Consensus 478 ~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~ 525 (623)
+ ..-|.-++.+|.+.|.. +||.+++-
T Consensus 743 s--------------PIGy~PFVe~c~~~~n~--------~EA~KYip 768 (829)
T KOG2280|consen 743 S--------------PIGYLPFVEACLKQGNK--------DEAKKYIP 768 (829)
T ss_pred C--------------CCCchhHHHHHHhcccH--------HHHhhhhh
Confidence 2 22456677888888876 68888873
No 250
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.08 E-value=2.8 Score=42.06 Aligned_cols=238 Identities=18% Similarity=0.223 Sum_probs=150.3
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc-------CCCC--
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK-------GVKA-- 275 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-------~~~p-- 275 (623)
...+.++|+.-|+.+..... . .++......--+|..+.+.|++++.++.|+. .+..
T Consensus 39 ~e~~p~~Al~sF~kVlelEg--E-------------KgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNy 103 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEG--E-------------KGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNY 103 (440)
T ss_pred cccCHHHHHHHHHHHHhccc--c-------------cchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccc
Confidence 67799999999998844221 1 1222334445788999999999999887753 3333
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHhhcC---------
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQS-TIRGDL----VLNNKVIEMYGKCGSMTDARRVFDHMADR--------- 341 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-g~~pd~----~~y~~Li~~y~k~g~~~~A~~lf~~m~~~--------- 341 (623)
+..+.|++++..+...+.+.-.++|+.-++. .-..+. .|-..|...|...|++.+-.+++.++...
T Consensus 104 SEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD 183 (440)
T KOG1464|consen 104 SEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD 183 (440)
T ss_pred cHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchh
Confidence 4467889999888888877777776654332 001111 23456888888888888888888877531
Q ss_pred ---C---hHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHhhcC
Q 044791 342 ---S---MDSWHLMINGYADNGLGDEGLQLFEQMRKLG-LQPNEQTFLAVFSACG-----SADAIEEAFIHFESMKSEFG 409 (623)
Q Consensus 342 ---~---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g-~~Pd~~ty~~li~a~~-----~~g~~e~A~~l~~~m~~~~g 409 (623)
+ ...|..=|..|....+-.+...+|+..+... --|..... -+|+-|+ +.|.+++|..-|-+..+.+.
T Consensus 184 ~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlIm-GvIRECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 184 QKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIM-GVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred hhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHH-hHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence 1 2278888888988888788888888776432 23444333 3445443 56888888754444443332
Q ss_pred C--CC---CccchhhHHHHHHhcCC----HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChh
Q 044791 410 I--SP---GTEHYLGLVGVLGKCGH----LFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDID 464 (623)
Q Consensus 410 ~--~p---~~~ty~~Li~~~~k~g~----~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~ 464 (623)
- .| ...-|..|.+++.+.|- -.+|.- ..-.|.+...+.|+.+|-. +++.
T Consensus 263 EsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP-----yKNdPEIlAMTnlv~aYQ~-NdI~ 320 (440)
T KOG1464|consen 263 ESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP-----YKNDPEILAMTNLVAAYQN-NDII 320 (440)
T ss_pred ccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC-----CCCCHHHHHHHHHHHHHhc-ccHH
Confidence 2 12 23346667777777652 222211 1134677889999999974 4554
No 251
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.01 E-value=3.2 Score=43.01 Aligned_cols=112 Identities=12% Similarity=0.030 Sum_probs=59.0
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHH----HHHhcCCH
Q 044791 355 DNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVG----VLGKCGHL 430 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~----~~~k~g~~ 430 (623)
-.|++.+|...++++++. ..-|..++.-.=++|...|+.+.....++++.- ...+|...|.-+-. ++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 345555666666666554 233555555555566666666666666665552 23444433333222 22345666
Q ss_pred HHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHH
Q 044791 431 FEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHA 469 (623)
Q Consensus 431 e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~ 469 (623)
++|++.-++++.+.+ |...-.++...+-..|+..++.+.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eF 231 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEF 231 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHH
Confidence 666666666555444 445555555555566666644333
No 252
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=92.78 E-value=1.8 Score=38.78 Aligned_cols=87 Identities=14% Similarity=0.013 Sum_probs=55.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC----ChH---HHHHHHHHHHHcCC
Q 044791 286 LCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR----SMD---SWHLMINGYADNGL 358 (623)
Q Consensus 286 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~----~~~---tyn~Li~~~~~~g~ 358 (623)
+++..|+++.|++.|.+.+.. .+-....||+-..+|.-.|+.++|+.=+++..+. +-. +|---...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 556777777777777777664 2335677777777777777777777777666541 111 34334445666677
Q ss_pred hHHHHHHHHHHHHcC
Q 044791 359 GDEGLQLFEQMRKLG 373 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g 373 (623)
.|.|..-|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777777766655
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.72 E-value=9.1 Score=39.16 Aligned_cols=152 Identities=13% Similarity=0.039 Sum_probs=97.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH-HHH---HHHHHHHHcCCh
Q 044791 284 FELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD-SWH---LMINGYADNGLG 359 (623)
Q Consensus 284 l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~-tyn---~Li~~~~~~g~~ 359 (623)
.......|++.+|..+|+......-. +...--.|+.+|...|++++|..+++.+...... -|. .-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 44567789999999999988875322 3556667899999999999999999998743222 222 234555555555
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHH
Q 044791 360 DEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIE 438 (623)
Q Consensus 360 eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~ 438 (623)
.+...+-.+.-+ .| |...=..+...+...|+.++|.+.+-.+.++..-.-|...-..||+.+.-.|..+.+...++
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 555555555443 45 55556677778888899999988776666541222244455566666655554444433333
Q ss_pred h
Q 044791 439 Q 439 (623)
Q Consensus 439 ~ 439 (623)
+
T Consensus 297 R 297 (304)
T COG3118 297 R 297 (304)
T ss_pred H
Confidence 3
No 254
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.70 E-value=2.6 Score=43.67 Aligned_cols=122 Identities=16% Similarity=0.179 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhhcCC--CCCccchhhHHHHHHhcCC-
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS--AD----AIEEAFIHFESMKSEFGI--SPGTEHYLGLVGVLGKCGH- 429 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~--~g----~~e~A~~l~~~m~~~~g~--~p~~~ty~~Li~~~~k~g~- 429 (623)
+++.+.+++.|++.|+.-+..+|.+....... .. ...+|..+|+.|++.+.+ .++...+.+|+.+ ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667889999999999998888775444333 22 356888999999987554 3355566666544 3333
Q ss_pred ---HHHHHHHHHhh--CCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCC
Q 044791 430 ---LFEAQQFIEQK--LPFE-PTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKAD 482 (623)
Q Consensus 430 ---~e~A~~lf~~~--m~~~-Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~ 482 (623)
.++++.+|+.. .++. -|..-+-+-|-++.....-+.+.++.+....+...++.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~k 214 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVK 214 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCc
Confidence 45566666661 1333 34444444444444444444455666666666666654
No 255
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.69 E-value=15 Score=42.90 Aligned_cols=225 Identities=12% Similarity=0.045 Sum_probs=129.3
Q ss_pred ccccccCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHH-HHHcCCHHHHHHHHHc-------
Q 044791 200 QWNNQQNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLAR-LCQEGKVKEAIELMDK------- 271 (623)
Q Consensus 200 ~w~~~~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~l~~~------- 271 (623)
.|....+.++++|..+..+...+...|+..... .....+.+|=.. ....|++++|+++.+.
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~-----------~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~ 490 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQG-----------DLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE 490 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCcccchh-----------hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc
Confidence 788888999999999999987655544322211 112333344222 2357899999988753
Q ss_pred -CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-----HHHHHcCC--HHHHHHHHHHhhc---
Q 044791 272 -GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVI-----EMYGKCGS--MTDARRVFDHMAD--- 340 (623)
Q Consensus 272 -~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li-----~~y~k~g~--~~~A~~lf~~m~~--- 340 (623)
......+.+.++..+..-.|+++.|..+..+..+..-.-|++.+..++ ..+-..|. ..+.+..|.....
T Consensus 491 ~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l 570 (894)
T COG2909 491 AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHL 570 (894)
T ss_pred ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 344566788888899999999999999988776642233433333222 22345563 3334444444332
Q ss_pred --CCh-----HHHHHHHHHHHHcCChHHHHHHHHHHH----HcCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 341 --RSM-----DSWHLMINGYADNGLGDEGLQLFEQMR----KLGLQPNEQ--TFLAVFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 341 --~~~-----~tyn~Li~~~~~~g~~eeA~~l~~eM~----~~g~~Pd~~--ty~~li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
... -++..++.++.+ ++.+..-...-. .....+-.. .+..|+......|++++|...++++..-
T Consensus 571 ~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 571 EQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred hhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 122 245555555555 333333222222 222222222 2236677778899999999999988853
Q ss_pred cCCCCCc-cchhh---HHHH--HHhcCCHHHHHHHHHh
Q 044791 408 FGISPGT-EHYLG---LVGV--LGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 408 ~g~~p~~-~ty~~---Li~~--~~k~g~~e~A~~lf~~ 439 (623)
....+. +-|.+ ++.. ....|+.++|.....+
T Consensus 648 -~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 648 -LLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred -hcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 222221 11222 2222 2346888887777766
No 256
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.54 E-value=7.5 Score=35.04 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGI 410 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~ 410 (623)
-.+..++.+...|+-|.-.+++.++.+ .-.++......+..||.+.|+..+|-+++.+..++ |+
T Consensus 88 ~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 88 YVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 345566777888888888888888764 23567777777888888888888888888887765 54
No 257
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.21 E-value=1.7 Score=51.64 Aligned_cols=105 Identities=10% Similarity=0.064 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-ChH--HHHHHHHHHHHc
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR-SMD--SWHLMINGYADN 356 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-~~~--tyn~Li~~~~~~ 356 (623)
|.+-.+-|...+.+++|--+|+..-+ ..--+.+|..+|+|.+|+.+-..|... |.. +--.|+.-+...
T Consensus 942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 942 YEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHc
Confidence 33333444445555555555543311 122345556666666666665555432 221 224455556666
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044791 357 GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHF 401 (623)
Q Consensus 357 g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~ 401 (623)
+++-+|-+++.+-... +.-.+..||+...+++|+++-
T Consensus 1013 ~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva 1049 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVA 1049 (1265)
T ss_pred ccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHH
Confidence 6666666655554432 112233444445555555544
No 258
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=1.4 Score=46.64 Aligned_cols=87 Identities=11% Similarity=0.030 Sum_probs=46.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcC------------------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 044791 318 VIEMYGKCGSMTDARRVFDHMADR------------------SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQ 379 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~~------------------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ 379 (623)
-.+.|.+.|++..|...|++...- -+.+++.|..+|.+.+++.+|+..-++.++.+ ..|+-
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 345667777777777777664320 11245555555555555555555555555442 12333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 380 TFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 380 ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
..---..+|...|+++.|+..|..+.
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~ 318 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKAL 318 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 33344445555555555555555555
No 259
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=92.01 E-value=27 Score=40.11 Aligned_cols=19 Identities=11% Similarity=-0.029 Sum_probs=10.2
Q ss_pred CCHHHHHHHHHHHHHcCCh
Q 044791 445 PTAEFWEALRNYARIHGDI 463 (623)
Q Consensus 445 Pd~~ty~~Li~a~~~~g~~ 463 (623)
.|..+|.-=|+.+|+..|.
T Consensus 836 rNa~afgF~is~L~kL~dT 854 (1102)
T KOG1924|consen 836 RNAQAFGFNISFLCKLRDT 854 (1102)
T ss_pred ccchhhccchHHHHhhccc
Confidence 4455555555555555543
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.90 E-value=1.4 Score=44.29 Aligned_cols=94 Identities=15% Similarity=0.275 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcC------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCC-HHHHHHHH
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMADR------SMDSWHLMINGYADNGLGDEGLQLFEQMRKLG-LQPN-EQTFLAVF 385 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~~------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g-~~Pd-~~ty~~li 385 (623)
.|+.-+.. .+.|++.+|...|....+. ....+--|..++...|++++|..+|..+.+.- -.|- ..++.-|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 56665544 4556688888888777653 12267778888888888888888888877542 1222 25666777
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhc
Q 044791 386 SACGSADAIEEAFIHFESMKSEF 408 (623)
Q Consensus 386 ~a~~~~g~~e~A~~l~~~m~~~~ 408 (623)
.+..+.|+.++|..+|+++.+++
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHC
Confidence 77788888888888888888664
No 261
>PRK15331 chaperone protein SicA; Provisional
Probab=91.88 E-value=1.4 Score=41.21 Aligned_cols=89 Identities=7% Similarity=-0.061 Sum_probs=61.7
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh---cCChHHHHHHHHHHHHcCC
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMA---DRSMDSWHLMINGYADNGL 358 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~---~~~~~tyn~Li~~~~~~g~ 358 (623)
....-+...|++++|..+|.-+.-.+.. +..-+..|..++-..+++++|+.+|...- ..|...+--+..+|...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 3444556678888888888777665433 45556677777777788888888877543 3455566667777888888
Q ss_pred hHHHHHHHHHHHH
Q 044791 359 GDEGLQLFEQMRK 371 (623)
Q Consensus 359 ~eeA~~l~~eM~~ 371 (623)
.++|...|+...+
T Consensus 121 ~~~A~~~f~~a~~ 133 (165)
T PRK15331 121 AAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHHHh
Confidence 8888887777766
No 262
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.72 E-value=13 Score=40.32 Aligned_cols=121 Identities=18% Similarity=0.169 Sum_probs=69.1
Q ss_pred HHHcCC-hHHHHHHHHHHHHcCCCC-CHHHHHHHHH----HHHh---cCCHHHHHHHHHHHHhhcCCCCCc----cchhh
Q 044791 353 YADNGL-GDEGLQLFEQMRKLGLQP-NEQTFLAVFS----ACGS---ADAIEEAFIHFESMKSEFGISPGT----EHYLG 419 (623)
Q Consensus 353 ~~~~g~-~eeA~~l~~eM~~~g~~P-d~~ty~~li~----a~~~---~g~~e~A~~l~~~m~~~~g~~p~~----~ty~~ 419 (623)
+.+.|. -++|+++++..++- .+ |..+-|.+.. +|.. ...+.+-..+-+-+. +.|+.|-. ..-|.
T Consensus 389 lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~-e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFIT-EVGLTPITISEEEIANF 465 (549)
T ss_pred HHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-hcCCCcccccHHHHHHH
Confidence 555665 78888888888763 33 2222222221 2222 122333333333333 34777633 34555
Q ss_pred HHHH--HHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 420 LVGV--LGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 420 Li~~--~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
|.+| +.-.|++.++.-.-.=..++.|...+|..+.-++....+++ ++++.+.++.++
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~---eA~~~l~~LP~n 524 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQ---EAWEYLQKLPPN 524 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHH---HHHHHHHhCCCc
Confidence 5554 44578888887543332347788888888888888888888 555555555553
No 263
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.70 E-value=2.8 Score=45.12 Aligned_cols=132 Identities=11% Similarity=0.003 Sum_probs=89.0
Q ss_pred HHHHcCCHHHHHHHHHc---CCCCC------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HH
Q 044791 255 RLCQEGKVKEAIELMDK---GVKAD------ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEM--YG 323 (623)
Q Consensus 255 ~~~~~g~~~~A~~l~~~---~~~pd------~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~--y~ 323 (623)
.+-+.+++.+|.++|.+ .+.-+ .+.-+-+|++|.. .+++.....+....+. .|. ..|-.|..+ +.
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~~-s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FGK-SAYLPLFKALVAY 90 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cCC-chHHHHHHHHHHH
Confidence 34578999999999964 22222 2345567777764 4577777777776664 221 223333332 34
Q ss_pred HcCCHHHHHHHHHHhhcC------------------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC----CCCHHHH
Q 044791 324 KCGSMTDARRVFDHMADR------------------SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGL----QPNEQTF 381 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~~------------------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~----~Pd~~ty 381 (623)
+.+.+++|+..|..-.+. |...=++.+..+...|++.|+..++++|...=+ .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 778999999988765432 222456678889999999999999999986543 3688899
Q ss_pred HHHHHHHHh
Q 044791 382 LAVFSACGS 390 (623)
Q Consensus 382 ~~li~a~~~ 390 (623)
+.++-.+++
T Consensus 171 d~~vlmlsr 179 (549)
T PF07079_consen 171 DRAVLMLSR 179 (549)
T ss_pred HHHHHHHhH
Confidence 988777765
No 264
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.62 E-value=2.8 Score=44.50 Aligned_cols=122 Identities=13% Similarity=0.043 Sum_probs=88.7
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHc-----CCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHH
Q 044791 284 FELCGNPKWYENAKKVHDYFLQS-----TIR---------GDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSW 346 (623)
Q Consensus 284 l~~~~~~g~~~~A~~l~~~m~~~-----g~~---------pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~ty 346 (623)
.+.+.+.|++..|..-|++.++. +.. .-..++.+|.-+|.|.+++.+|+...++..+ .|+...
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KAL 294 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKAL 294 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHH
Confidence 44667778888888777775542 111 1236788899999999999999999987765 466666
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCC-HHHHHHHHHHHHhh
Q 044791 347 HLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS-ADA-IEEAFIHFESMKSE 407 (623)
Q Consensus 347 n~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~-~g~-~e~A~~l~~~m~~~ 407 (623)
---..+|...|+++.|...|+++.+. .|+..+-..=|..|.+ ..+ .+...++|..|...
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66788999999999999999999984 7776666555555543 333 34446888888754
No 265
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.23 E-value=2 Score=40.99 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCCh------HHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMADRSM------DSWHLMINGYADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~------~tyn~Li~~~~~~g~~eeA~~l~~eM~ 370 (623)
..+..+...|++.|+.++|++.|.++.+..+ ..+-.+|......+++..+.....+..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4566677777777777777777777665422 255666666666677776666666554
No 266
>PF13388 DUF4106: Protein of unknown function (DUF4106)
Probab=91.14 E-value=0.44 Score=47.60 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=14.3
Q ss_pred ccCCCCCCCCCCCCCCCCCCC
Q 044791 57 EYNTPPPQPPQSPLSDSRAFP 77 (623)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~ 77 (623)
.|=.|.|+--..-|.=|..|-
T Consensus 170 TYIPPNPPrEAPAPGLPKTFT 190 (422)
T PF13388_consen 170 TYIPPNPPREAPAPGLPKTFT 190 (422)
T ss_pred cccCCCCcccccCCCCcchhh
Confidence 566777776666677777773
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.14 E-value=9.4 Score=39.65 Aligned_cols=131 Identities=11% Similarity=0.003 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH---HHHH
Q 044791 275 ADASCFYTLFELCGNPKWYENAKKVHDYFLQS---TIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD---SWHL 348 (623)
Q Consensus 275 pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~---g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~---tyn~ 348 (623)
-|..++.-.-++|.-.|+.+.-...+++++-. +++-..++...+.-++..+|-+++|++.-++..+-|.. +-.+
T Consensus 135 tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha 214 (491)
T KOG2610|consen 135 TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHA 214 (491)
T ss_pred hhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHH
Confidence 34444555555666666666666666655432 22212233333444445667777777766666554333 3444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 349 MINGYADNGLGDEGLQLFEQMRKLGLQP---NEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 349 Li~~~~~~g~~eeA~~l~~eM~~~g~~P---d~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
+...+-.+|++.++.++..+-...--.- -..-|-...-.+.+.+.++.|+++|+.-+
T Consensus 215 ~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 215 KAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 5555566677777766655533210000 01111122223344566777777776433
No 268
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.09 E-value=12 Score=43.39 Aligned_cols=176 Identities=14% Similarity=0.101 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHc-CCCCCH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDK-GVKADA--SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~-~~~pd~--~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k 324 (623)
..-+-|..+++...++.|+.+-+. +..+|. .....-.+-|.+.|++++|...|-+.+.. +.|. -+|.-|..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 344667778888888888888764 333332 12333444566789999998888665443 2322 24555666
Q ss_pred cCCHHHHHHHHHHhhcCChH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044791 325 CGSMTDARRVFDHMADRSMD---SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHF 401 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~~~~~---tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~ 401 (623)
..++..-..+++.+.+.+.. .-..||.+|.+.++.++-.++.+.-. .|.- ..-.-..+..|.+.+-+++|..+-
T Consensus 410 aq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHH
Confidence 66666666777777665443 56778999999999888777665544 3322 112345667777778888887665
Q ss_pred HHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 402 ESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 402 ~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
..... +. ..|--.+-..+++++|++++.. |+
T Consensus 487 ~k~~~------he---~vl~ille~~~ny~eAl~yi~s-lp 517 (933)
T KOG2114|consen 487 TKFKK------HE---WVLDILLEDLHNYEEALRYISS-LP 517 (933)
T ss_pred HHhcc------CH---HHHHHHHHHhcCHHHHHHHHhc-CC
Confidence 44331 11 1233345567889999999888 65
No 269
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.95 E-value=3.4 Score=37.75 Aligned_cols=50 Identities=14% Similarity=0.261 Sum_probs=27.1
Q ss_pred HHcCCHHHHHHHHHHhhcC------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 323 GKCGSMTDARRVFDHMADR------SMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 323 ~k~g~~~~A~~lf~~m~~~------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
.+.|++++|++.|+.+..+ ..-+--.|+.+|.+.|++++|...+++.++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3445666666666655542 1114444555666666666666666665554
No 270
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=90.88 E-value=34 Score=40.12 Aligned_cols=179 Identities=16% Similarity=0.096 Sum_probs=103.5
Q ss_pred HHcCCHHHHHHHHHc--------CCCCCH---HHHHHHHHH-HhCCCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHH
Q 044791 257 CQEGKVKEAIELMDK--------GVKADA---SCFYTLFEL-CGNPKWYENAKKVHDYFLQS----TIRGDLVLNNKVIE 320 (623)
Q Consensus 257 ~~~g~~~~A~~l~~~--------~~~pd~---~ty~~Ll~~-~~~~g~~~~A~~l~~~m~~~----g~~pd~~~y~~Li~ 320 (623)
....++++|..+..+ +..+.. ..|+.|-.. ....|++++|+++-+..... -....+..+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 467889999888742 112222 345554443 24468899999998877654 22345778888888
Q ss_pred HHHHcCCHHHHHHHHHHhhcC----ChH---HHHHHHHH--HHHcCC--hHHHHHHHHHHHHc-----CC-CCCHHHHHH
Q 044791 321 MYGKCGSMTDARRVFDHMADR----SMD---SWHLMING--YADNGL--GDEGLQLFEQMRKL-----GL-QPNEQTFLA 383 (623)
Q Consensus 321 ~y~k~g~~~~A~~lf~~m~~~----~~~---tyn~Li~~--~~~~g~--~eeA~~l~~eM~~~-----g~-~Pd~~ty~~ 383 (623)
+..-.|++++|..+.....+. ++. .|..++.+ +...|+ +++.+..|....+. .+ .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 998999999999988766543 554 34444333 555663 34444444444322 11 122345555
Q ss_pred HHHHHHhcCCHHHHHH----HHHHHHhhcCCCCCcc--chhhHHHHHHhcCCHHHHHHHHHh
Q 044791 384 VFSACGSADAIEEAFI----HFESMKSEFGISPGTE--HYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 384 li~a~~~~g~~e~A~~----l~~~m~~~~g~~p~~~--ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
++.++.+ ++.+.. -++.-. .+...+-.. .+..|+..+...|+.++|...+++
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~-~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~ 643 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGS-VYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDE 643 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhh-hcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5656555 333332 121111 111122111 223567777889999999999888
No 271
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=90.87 E-value=2 Score=39.19 Aligned_cols=54 Identities=19% Similarity=0.121 Sum_probs=26.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQ--PNEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~--Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
..+.|++++|.+.|+.+...-.. -...+-..|+.+|.+.|++++|...+++.++
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFir 75 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIR 75 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 34455555555555555543111 1223344455555555555555555555553
No 272
>PRK10263 DNA translocase FtsK; Provisional
Probab=90.32 E-value=0.82 Score=55.42 Aligned_cols=47 Identities=9% Similarity=0.276 Sum_probs=35.6
Q ss_pred HhHHHHHHhcccCCCCChhHHHh-hHhhhcchhHHHHHHHHHhCCceeee
Q 044791 556 SERLAIAYGLISTPARTPLRIIK-NLRVCGDCHNAIKIMSRIVGRELIVR 604 (623)
Q Consensus 556 ~g~l~~A~~ll~~m~~~~~~i~~-~l~~~g~~~~a~~l~~~~~~~~~~~r 604 (623)
...+++|.+++.+..+..+..+. -|+.. +..|.++++.|.+++||-.
T Consensus 1292 D~l~~~a~~~v~~~~~~S~S~lQR~~~iG--ynRAariid~lE~~Giv~p 1339 (1355)
T PRK10263 1292 DPLFDQAVQFVTEKRKASISGVQRQFRIG--YNRAARIIEQMEAQGIVSE 1339 (1355)
T ss_pred cHHHHHHHHHHHhcCccCHHHHHHHhhcC--hHHHHHHHHHHHHCCcCCC
Confidence 35678899998888776665554 44432 6789999999999999875
No 273
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=90.26 E-value=1.8 Score=38.77 Aligned_cols=89 Identities=19% Similarity=0.146 Sum_probs=50.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC--CHH---HHHHHHHHHHHc
Q 044791 387 ACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP--TAE---FWEALRNYARIH 460 (623)
Q Consensus 387 a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P--d~~---ty~~Li~a~~~~ 460 (623)
++++.|+++.|++.|...+ .+.| ....||.-..+|.-.|+.++|++=+++++++.- .-. .|.--...|...
T Consensus 52 alaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 4556677777777776665 3333 455677777777777777777666666443111 111 122222245566
Q ss_pred CChhHHHHHHHHHHhcCC
Q 044791 461 GDIDLEDHAEELMVDLDP 478 (623)
Q Consensus 461 g~~~~A~~~~~~~~~m~~ 478 (623)
|+.|.|..-++...+++.
T Consensus 129 g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGS 146 (175)
T ss_pred CchHHHHHhHHHHHHhCC
Confidence 777777666666666543
No 274
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.74 E-value=14 Score=37.83 Aligned_cols=163 Identities=14% Similarity=0.072 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHHHH------cC-----CHHHHHHHHHHhhcCC--hHHHHHHHHHHHHcCChHHHHHHHHHHH-------
Q 044791 311 DLVLNNKVIEMYGK------CG-----SMTDARRVFDHMADRS--MDSWHLMINGYADNGLGDEGLQLFEQMR------- 370 (623)
Q Consensus 311 d~~~y~~Li~~y~k------~g-----~~~~A~~lf~~m~~~~--~~tyn~Li~~~~~~g~~eeA~~l~~eM~------- 370 (623)
...+|.+.+.++.. .| .-.+|+++|--+.+.. .++-+-+|.++....+..+|...|...+
T Consensus 121 ~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkgk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaL 200 (361)
T COG3947 121 AEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKGKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKAL 200 (361)
T ss_pred chhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcCCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHh
Confidence 34556666666652 11 1346777777665432 4455666777777777777766554432
Q ss_pred H-------------------cCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhhcCCCCCc-------------cch
Q 044791 371 K-------------------LGLQPNEQTFLAVFSACGSA-DAIEEAFIHFESMKSEFGISPGT-------------EHY 417 (623)
Q Consensus 371 ~-------------------~g~~Pd~~ty~~li~a~~~~-g~~e~A~~l~~~m~~~~g~~p~~-------------~ty 417 (623)
. .+++-|+.-|-..+...-.. ..++++.+++...+- +.-++. .+|
T Consensus 201 s~L~~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inltide~kelv~~ykg--dyl~e~~y~Waedererle~ly 278 (361)
T COG3947 201 SRLNANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLTIDELKELVGQYKG--DYLPEADYPWAEDERERLEQLY 278 (361)
T ss_pred chhccCceEEEcCCceEEecCCccccHHHHHHHhhhhhccccCHHHHHHHHHHhcC--CcCCccccccccchHHHHHHHH
Confidence 1 23455777777777665433 457777777766642 222221 133
Q ss_pred hh----HHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 418 LG----LVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 418 ~~----Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
.. ....|..+|.+.+|.++-++++.+.| +...|..|+..|+..||--.|.+-++.+.+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33 34568889999999999999776666 778888999999999997767666666544
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=89.62 E-value=2.6 Score=43.02 Aligned_cols=75 Identities=16% Similarity=0.292 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRK-----LGLQPNEQTFLAV 384 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~-----~g~~Pd~~ty~~l 384 (623)
.++..++..+..+|+++.+.+.++++... +...|..||.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 34555666666667777777666666543 333677777777777777777766666553 4666655555444
Q ss_pred HHH
Q 044791 385 FSA 387 (623)
Q Consensus 385 i~a 387 (623)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
No 276
>PRK12798 chemotaxis protein; Reviewed
Probab=89.40 E-value=34 Score=36.81 Aligned_cols=153 Identities=18% Similarity=0.209 Sum_probs=104.7
Q ss_pred cCCHHHHHHHHHHhhcC----ChHHHHHHHHH-HHHcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHH
Q 044791 325 CGSMTDARRVFDHMADR----SMDSWHLMING-YADNGLGDEGLQLFEQMRKLGLQPN----EQTFLAVFSACGSADAIE 395 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~~----~~~tyn~Li~~-~~~~g~~eeA~~l~~eM~~~g~~Pd----~~ty~~li~a~~~~g~~e 395 (623)
.|+.++|.+.|..+... .+..|-.|+.+ ..-..+..+|+++|+...-. .|- ....---|......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 58999999999888643 34467777776 45556789999999987643 343 233444455667889999
Q ss_pred HHHHHHHHHHhhcCCCCCccchh----hHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 044791 396 EAFIHFESMKSEFGISPGTEHYL----GLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEE 471 (623)
Q Consensus 396 ~A~~l~~~m~~~~g~~p~~~ty~----~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~ 471 (623)
+++.+-.....+|...|=..-|- ..+..+....+.+.-.+++.. |.-.--...|-.+...-...|+.+.|..+.+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~-~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSF-MDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHh-cCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99988888887776666333222 233333333445566666666 6523334688888888889999999999999
Q ss_pred HHHhcCCCC
Q 044791 472 LMVDLDPSK 480 (623)
Q Consensus 472 ~~~~m~~~~ 480 (623)
+...+...+
T Consensus 282 ~A~~L~~~~ 290 (421)
T PRK12798 282 RALKLADPD 290 (421)
T ss_pred HHHHhccCC
Confidence 988887443
No 277
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.27 E-value=25 Score=35.11 Aligned_cols=213 Identities=15% Similarity=0.062 Sum_probs=128.7
Q ss_pred HHHHHHHHH---cCCCCCH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044791 262 VKEAIELMD---KGVKADA----SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRV 334 (623)
Q Consensus 262 ~~~A~~l~~---~~~~pd~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~l 334 (623)
..+|.++.. ...+||- ..|.--..+|....++++|...+.+..+. .+-+...| .-...++.|.-+
T Consensus 9 i~ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslf-------hAAKayEqaamL 80 (308)
T KOG1585|consen 9 ISEADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLF-------HAAKAYEQAAML 80 (308)
T ss_pred HHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHH-------HHHHHHHHHHHH
Confidence 344444442 1345654 34666677888889999999888776542 22222222 223445667777
Q ss_pred HHHhhcCChH--HHHHHHHHHHHcCChHHHHHHHHHHHH--cCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 044791 335 FDHMADRSMD--SWHLMINGYADNGLGDEGLQLFEQMRK--LGLQPNEQ--TFLAVFSACGSADAIEEAFIHFESMKSEF 408 (623)
Q Consensus 335 f~~m~~~~~~--tyn~Li~~~~~~g~~eeA~~l~~eM~~--~g~~Pd~~--ty~~li~a~~~~g~~e~A~~l~~~m~~~~ 408 (623)
.++|.+-+.+ .|+-.+..|...|..+-|-..+++.-+ ..+.|+.. .|.--+...-..++...|.++
T Consensus 81 ake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el-------- 152 (308)
T KOG1585|consen 81 AKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL-------- 152 (308)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH--------
Confidence 7777665443 677788899999999988887777542 23555532 333333333333444333333
Q ss_pred CCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC-------CCCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 409 GISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-------FEPTA-EFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 409 g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-------~~Pd~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
|..+-.+|++..++++|-..|.+ .. -.++. ..|-..|-.|.-..|+..|++.++.-..+....
T Consensus 153 --------~gk~sr~lVrl~kf~Eaa~a~lK-e~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~ 223 (308)
T KOG1585|consen 153 --------YGKCSRVLVRLEKFTEAATAFLK-EGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL 223 (308)
T ss_pred --------HHHhhhHhhhhHHhhHHHHHHHH-hhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc
Confidence 34455668888888888777766 22 12232 345555666666678887888877765554443
Q ss_pred CCCCCCCCCCCchhhHHHHhhhcCccc
Q 044791 481 ADPKKIPTPPPKKRTAISILDGKSRLV 507 (623)
Q Consensus 481 ~~~~~~~~~~p~~~t~~~li~~~~~~~ 507 (623)
.+ -+..+...||.+|-...
T Consensus 224 ~s--------ed~r~lenLL~ayd~gD 242 (308)
T KOG1585|consen 224 KS--------EDSRSLENLLTAYDEGD 242 (308)
T ss_pred Ch--------HHHHHHHHHHHHhccCC
Confidence 33 55777888888875543
No 278
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=89.00 E-value=27 Score=35.48 Aligned_cols=139 Identities=20% Similarity=0.162 Sum_probs=73.5
Q ss_pred HHHHHcCCHHHHHHHH-------H-cCCCCCHHHHHHHHHHHhCCCCHH-HHHHHHHHHHH---cC--CCCCHHHHHHHH
Q 044791 254 ARLCQEGKVKEAIELM-------D-KGVKADASCFYTLFELCGNPKWYE-NAKKVHDYFLQ---ST--IRGDLVLNNKVI 319 (623)
Q Consensus 254 ~~~~~~g~~~~A~~l~-------~-~~~~pd~~ty~~Ll~~~~~~g~~~-~A~~l~~~m~~---~g--~~pd~~~y~~Li 319 (623)
..+.+.|+...|-++- + .++..|......|+..+...+.-+ +-.++.+++++ .| -.-|......+.
T Consensus 18 ~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a 97 (260)
T PF04190_consen 18 LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLA 97 (260)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 3466677776665542 2 366677766666666665543222 23344444433 22 223678888999
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044791 320 EMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFI 399 (623)
Q Consensus 320 ~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~ 399 (623)
..|.+.|++.+|+..|-.-.......+-.++......|...|+.- ..-.+++ -|...+++..|..
T Consensus 98 ~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dl--------------fi~RaVL-~yL~l~n~~~A~~ 162 (260)
T PF04190_consen 98 EKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADL--------------FIARAVL-QYLCLGNLRDANE 162 (260)
T ss_dssp HHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHH--------------HHHHHHH-HHHHTTBHHHHHH
T ss_pred HHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhH--------------HHHHHHH-HHHHhcCHHHHHH
Confidence 999999999999887744333333334334544454555444422 2222222 3555688888888
Q ss_pred HHHHHHhh
Q 044791 400 HFESMKSE 407 (623)
Q Consensus 400 l~~~m~~~ 407 (623)
+++...+.
T Consensus 163 ~~~~f~~~ 170 (260)
T PF04190_consen 163 LFDTFTSK 170 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777654
No 279
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.95 E-value=28 Score=35.21 Aligned_cols=191 Identities=11% Similarity=0.012 Sum_probs=104.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHhhc-------C--ChHHHHHHHHHHHHcCC
Q 044791 291 KWYENAKKVHDYFLQSTIRGDL---VLNNKVIEMYGKCGSMTDARRVFDHMAD-------R--SMDSWHLMINGYADNGL 358 (623)
Q Consensus 291 g~~~~A~~l~~~m~~~g~~pd~---~~y~~Li~~y~k~g~~~~A~~lf~~m~~-------~--~~~tyn~Li~~~~~~g~ 358 (623)
...++|+.-|.+.++..-.... ....-+|..+.+.|++++.++.|.+|.. + ...+.|++++.......
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 3566677777666653212122 2333456667777777777777776642 1 22256666665554444
Q ss_pred hHHHHHHHHHHHH----c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC----------CccchhhHHHH
Q 044791 359 GDEGLQLFEQMRK----L-GLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP----------GTEHYLGLVGV 423 (623)
Q Consensus 359 ~eeA~~l~~eM~~----~-g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p----------~~~ty~~Li~~ 423 (623)
.+-.-++|+.-++ . +-+.--.|-+.|...|...|.+.+..+++.++...+...- -...|..-|.+
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 3333333332211 1 0111112344566666677777777777776664321111 13567777888
Q ss_pred HHhcCCHHHHHHHHHhhCC---CCCCHHHHHHHHH----HHHHcCChhHH-HHHHHHHHhcCCCCC
Q 044791 424 LGKCGHLFEAQQFIEQKLP---FEPTAEFWEALRN----YARIHGDIDLE-DHAEELMVDLDPSKA 481 (623)
Q Consensus 424 ~~k~g~~e~A~~lf~~~m~---~~Pd~~ty~~Li~----a~~~~g~~~~A-~~~~~~~~~m~~~~~ 481 (623)
|....+-.+...+|+.++. .-|.......+-. ...+.|.+++| -..++.+...+..|.
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGs 266 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS 266 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCC
Confidence 8888888888888888554 2344444433322 23456777766 356666666666654
No 280
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.74 E-value=5.5 Score=37.95 Aligned_cols=95 Identities=14% Similarity=0.037 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchh--hH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE--QTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYL--GL 420 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~--~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~--~L 420 (623)
.|..+..-|++.|+.++|++.|.++.+....+.. ..+..+|..+...+++..+...+.+...-....-|...-| ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 7889999999999999999999999987655543 4567888899999999999988877764311111222222 12
Q ss_pred HHH--HHhcCCHHHHHHHHHh
Q 044791 421 VGV--LGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 421 i~~--~~k~g~~e~A~~lf~~ 439 (623)
..+ +...|++.+|-++|-.
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHc
Confidence 222 3347899999999988
No 281
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.72 E-value=0.9 Score=30.79 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=14.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~ 370 (623)
|+.|...|.+.|++++|+++|++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555566666666666666665533
No 282
>PHA02875 ankyrin repeat protein; Provisional
Probab=88.52 E-value=15 Score=39.66 Aligned_cols=207 Identities=11% Similarity=0.005 Sum_probs=115.1
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCC
Q 044791 252 DLARLCQEGKVKEAIELMDKGVKADASC--FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLV--LNNKVIEMYGKCGS 327 (623)
Q Consensus 252 li~~~~~~g~~~~A~~l~~~~~~pd~~t--y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--~y~~Li~~y~k~g~ 327 (623)
-+...++.|..+.+..+++.|..++... ..+.+..++..|+.+- .+.+++.|..++.. ...+.+...++.|+
T Consensus 5 ~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~----v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~ 80 (413)
T PHA02875 5 ALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEA----IKLLMKHGAIPDVKYPDIESELHDAVEEGD 80 (413)
T ss_pred HHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHH----HHHHHhCCCCccccCCCcccHHHHHHHCCC
Confidence 3555677899999988889888876533 3345555566777653 44455666655432 12345666778899
Q ss_pred HHHHHHHHHHhhcCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHH
Q 044791 328 MTDARRVFDHMADRSM----DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQT--FLAVFSACGSADAIEEAFIHF 401 (623)
Q Consensus 328 ~~~A~~lf~~m~~~~~----~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~t--y~~li~a~~~~g~~e~A~~l~ 401 (623)
.+.+..+++.-...+. ..++ .+...+..|.. ++++.+.+.|..++... -.+.+...+..|+.+-+..++
T Consensus 81 ~~~v~~Ll~~~~~~~~~~~~~g~t-pL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 81 VKAVEELLDLGKFADDVFYKDGMT-PLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI 155 (413)
T ss_pred HHHHHHHHHcCCcccccccCCCCC-HHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 9988888765432111 1122 33334455665 45555566777765432 123455556778876655554
Q ss_pred HHHHhhcCCCCCcc--chhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 402 ESMKSEFGISPGTE--HYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEF---WEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 402 ~~m~~~~g~~p~~~--ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~t---y~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
+ . |..++.. .-.+.+...+..|..+-+.-+++. +..++... ..+++...+..|+.+ +.+.+.+.
T Consensus 156 ~----~-g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~--ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~ 224 (413)
T PHA02875 156 D----H-KACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS--GANIDYFGKNGCVAALCYAIENNKID----IVRLFIKR 224 (413)
T ss_pred h----c-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHC
Confidence 3 2 4444321 122344555667887776666654 32333211 124444445667764 55555554
Q ss_pred CC
Q 044791 477 DP 478 (623)
Q Consensus 477 ~~ 478 (623)
+.
T Consensus 225 ga 226 (413)
T PHA02875 225 GA 226 (413)
T ss_pred Cc
Confidence 33
No 283
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.19 E-value=31 Score=41.23 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=24.6
Q ss_pred HcC-CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 044791 270 DKG-VKADASCFYTLFELCGNPKWYENAKKVHDYFL 304 (623)
Q Consensus 270 ~~~-~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~ 304 (623)
+++ +.|....+-.-|..+.+.+++++|..+...|.
T Consensus 989 ~~~~LSp~~~~~L~~la~~i~~~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 989 RDGTLSPPITDGLHQLAQSIKNRDYSEALQIHAQIA 1024 (1049)
T ss_pred hcCCcChHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 344 66666666666666777788888888887776
No 284
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.14 E-value=5.6 Score=37.51 Aligned_cols=116 Identities=13% Similarity=0.130 Sum_probs=50.8
Q ss_pred HHcCCHHHHHHHHHHhhcCChHHHHHHH-----HHHHHcCChHHHHHHHHHHHHcCCCCCHH-HHHHHH--HHHHhcCCH
Q 044791 323 GKCGSMTDARRVFDHMADRSMDSWHLMI-----NGYADNGLGDEGLQLFEQMRKLGLQPNEQ-TFLAVF--SACGSADAI 394 (623)
Q Consensus 323 ~k~g~~~~A~~lf~~m~~~~~~tyn~Li-----~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~-ty~~li--~a~~~~g~~ 394 (623)
+..+..++|+.-|..+.+.+.-.|-.|. ......|+..+|...|++.-...-.|-.. -.--|= -.+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 3445555555555555554444333332 12445555566666666555433233221 011111 113344555
Q ss_pred HHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 395 EEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 395 e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
+.....++-+... +-..-...-.+|.-+-.+.|++.+|..+|..
T Consensus 149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~q 192 (221)
T COG4649 149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQ 192 (221)
T ss_pred HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHH
Confidence 5554444443321 1111222223444444556666666666666
No 285
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.01 E-value=23 Score=36.39 Aligned_cols=143 Identities=13% Similarity=0.068 Sum_probs=93.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044791 318 VIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAI 394 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~ 394 (623)
-.......|++.+|..+|+.... .+...--.|+.+|...|+.++|..++..+-..--.........-|..+.+....
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 34456778999999999998764 344567778899999999999999999876432222223322334444444444
Q ss_pred HHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCC---CCCHHHHHHHHHHHHHcCChh
Q 044791 395 EEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPF---EPTAEFWEALRNYARIHGDID 464 (623)
Q Consensus 395 e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~---~Pd~~ty~~Li~a~~~~g~~~ 464 (623)
.+...+-.+..+ .| |...--.|...|.-.|+.++|.+.+-..|.. .-|...-..|+..+...|..|
T Consensus 220 ~~~~~l~~~~aa----dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 220 PEIQDLQRRLAA----DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CCHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence 444444444432 35 5555567888899999999999887764541 123455566666666666444
No 286
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.91 E-value=14 Score=34.37 Aligned_cols=108 Identities=16% Similarity=0.164 Sum_probs=56.4
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHhhcCChH-HHHHHHHHHHHcCChHHHH
Q 044791 286 LCGNPKWYENAKKVHDYFLQSTIRGDLVLNNK-VIEMYGKCGSMTDARRVFDHMADRSMD-SWHLMINGYADNGLGDEGL 363 (623)
Q Consensus 286 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~-Li~~y~k~g~~~~A~~lf~~m~~~~~~-tyn~Li~~~~~~g~~eeA~ 363 (623)
.-.+.++.+++..+++-|.- +.|....... -...+.+.|+|++|+++|+++.+.... .|-.-+.++|-...-|..+
T Consensus 19 ~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 19 VALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 33556678888888887776 4454322222 233456778888888888887765443 3333333333333334444
Q ss_pred HHH-HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044791 364 QLF-EQMRKLGLQPNEQTFLAVFSACGSADAIEEAF 398 (623)
Q Consensus 364 ~l~-~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~ 398 (623)
..+ +++.+.+-.|+.. .|+..+....+...|.
T Consensus 97 r~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 97 RRYADEVLESGADPDAR---ALVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHHHhcCCChHHH---HHHHHHHHhccccchh
Confidence 433 3355555444443 2334444444443333
No 287
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.76 E-value=8.6 Score=35.35 Aligned_cols=90 Identities=11% Similarity=0.071 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHhhcCChH-HHHHHHHHHHHcCChHHHHHHH
Q 044791 289 NPKWYENAKKVHDYFLQSTIRGDLVLNN-KVIEMYGKCGSMTDARRVFDHMADRSMD-SWHLMINGYADNGLGDEGLQLF 366 (623)
Q Consensus 289 ~~g~~~~A~~l~~~m~~~g~~pd~~~y~-~Li~~y~k~g~~~~A~~lf~~m~~~~~~-tyn~Li~~~~~~g~~eeA~~l~ 366 (623)
..++.+++..+++.|.- +.|+..-.. --.-.+...|++++|+++|+++.+.... .|..-+.++|-...-|-....+
T Consensus 22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~~ 99 (153)
T TIGR02561 22 RSADPYDAQAMLDALRV--LRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHVH 99 (153)
T ss_pred hcCCHHHHHHHHHHHHH--hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHHH
Confidence 36788888888888876 444432221 1233456778888888888888776543 5666666655544444444433
Q ss_pred -HHHHHcCCCCCHHH
Q 044791 367 -EQMRKLGLQPNEQT 380 (623)
Q Consensus 367 -~eM~~~g~~Pd~~t 380 (623)
.++++.|-.++.+.
T Consensus 100 A~~~le~~~~~~a~~ 114 (153)
T TIGR02561 100 ADEVLARDADADAVA 114 (153)
T ss_pred HHHHHHhCCCHhHHH
Confidence 33444444444443
No 288
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.63 E-value=17 Score=42.19 Aligned_cols=204 Identities=12% Similarity=0.035 Sum_probs=128.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHH------------------cCC--CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 044791 247 PPSVADLARLCQEGKVKEAIELMD------------------KGV--KADASCFYTLFELCGNPKWYENAKKVHDYFLQS 306 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~------------------~~~--~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~ 306 (623)
.+.+.++.+|...+++-.=.-+++ +|+ .........-|+.+++...++.|+.+-+. .
T Consensus 284 ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~---~ 360 (933)
T KOG2114|consen 284 SSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKS---Q 360 (933)
T ss_pred cchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHh---c
Confidence 455677777777776533222221 111 12233455667777787778888776533 3
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044791 307 TIRGD--LVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAV 384 (623)
Q Consensus 307 g~~pd--~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~l 384 (623)
+..+| ....-...+-+.+.|++++|..-|-+-...-. =..+|.-|....+..+-..+++.+.+.|+.- ...-+.|
T Consensus 361 ~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le--~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~-~dhttlL 437 (933)
T KOG2114|consen 361 HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE--PSEVIKKFLDAQRIKNLTSYLEALHKKGLAN-SDHTTLL 437 (933)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC--hHHHHHHhcCHHHHHHHHHHHHHHHHccccc-chhHHHH
Confidence 33333 12333344555678999999988866543221 2346677788888888899999999999874 3444578
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChh
Q 044791 385 FSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDID 464 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~ 464 (623)
|.+|.+.++.++-.++..... + |.. ..-....+..+.+.+-.++|.-+-.+ ... +....+.++. ..++++
T Consensus 438 LncYiKlkd~~kL~efI~~~~-~-g~~--~fd~e~al~Ilr~snyl~~a~~LA~k-~~~--he~vl~ille---~~~ny~ 507 (933)
T KOG2114|consen 438 LNCYIKLKDVEKLTEFISKCD-K-GEW--FFDVETALEILRKSNYLDEAELLATK-FKK--HEWVLDILLE---DLHNYE 507 (933)
T ss_pred HHHHHHhcchHHHHHHHhcCC-C-cce--eeeHHHHHHHHHHhChHHHHHHHHHH-hcc--CHHHHHHHHH---HhcCHH
Confidence 999999999999888776544 2 322 11234567888888999999888877 432 3344444443 345565
Q ss_pred HH
Q 044791 465 LE 466 (623)
Q Consensus 465 ~A 466 (623)
+|
T Consensus 508 eA 509 (933)
T KOG2114|consen 508 EA 509 (933)
T ss_pred HH
Confidence 33
No 289
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.48 E-value=1.4 Score=47.04 Aligned_cols=9 Identities=44% Similarity=0.350 Sum_probs=3.8
Q ss_pred hhhhhhhhh
Q 044791 85 NQWASQQEQ 93 (623)
Q Consensus 85 ~~~~~~~~~ 93 (623)
+.|+..|+|
T Consensus 409 ~s~p~pq~q 417 (483)
T KOG2236|consen 409 NSGPSPQQQ 417 (483)
T ss_pred CCCCCcccC
Confidence 444444333
No 290
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=87.45 E-value=11 Score=40.63 Aligned_cols=74 Identities=22% Similarity=0.148 Sum_probs=43.0
Q ss_pred hHHHHHHhcCCHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhH
Q 044791 419 GLVGVLGKCGHLFEAQQFIEQKLP--FEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTA 496 (623)
Q Consensus 419 ~Li~~~~k~g~~e~A~~lf~~~m~--~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~ 496 (623)
.|+.-|.-.|++.||..++++ ++ ..-..+.+.+++.+.-+.|+-. .+++++.+.-..+.+ |-
T Consensus 514 ~LLeEY~~~GdisEA~~Cike-LgmPfFhHEvVkkAlVm~mEkk~d~t---~~ldLLk~cf~sglI------------T~ 577 (645)
T KOG0403|consen 514 MLLEEYELSGDISEACHCIKE-LGMPFFHHEVVKKALVMVMEKKGDST---MILDLLKECFKSGLI------------TT 577 (645)
T ss_pred HHHHHHHhccchHHHHHHHHH-hCCCcchHHHHHHHHHHHHHhcCcHH---HHHHHHHHHHhcCce------------eH
Confidence 455556666777777777776 44 3345566777777777666655 444555444434332 55
Q ss_pred HHHhhhcCcccc
Q 044791 497 ISILDGKSRLVE 508 (623)
Q Consensus 497 ~~li~~~~~~~~ 508 (623)
+-|-.+|.|..+
T Consensus 578 nQMtkGf~RV~d 589 (645)
T KOG0403|consen 578 NQMTKGFERVYD 589 (645)
T ss_pred HHhhhhhhhhhc
Confidence 555556555543
No 291
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=87.41 E-value=51 Score=36.40 Aligned_cols=181 Identities=10% Similarity=0.084 Sum_probs=122.9
Q ss_pred CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCh--HHHHHHHH
Q 044791 274 KADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSM--DSWHLMIN 351 (623)
Q Consensus 274 ~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~--~tyn~Li~ 351 (623)
..|..+.-++|..++....+.-++.+..+|+..| -+-..|-.++.+|... .-+.-..+++++.+-+. +...--+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHH
Confidence 3566778888999999888888999999999865 3567788899999888 55777788887765422 23333334
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHh
Q 044791 352 GYADNGLGDEGLQLFEQMRKLGLQP--N---EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGK 426 (623)
Q Consensus 352 ~~~~~g~~eeA~~l~~eM~~~g~~P--d---~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k 426 (623)
.+...++.+++..+|.+....-+.- + -..|.-|+..- ..+.|.-+.+...+..+.|..--.+.+--+-.-|..
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4444488888999998887652220 1 11343333321 356777788887877776666666666666677888
Q ss_pred cCCHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHH
Q 044791 427 CGHLFEAQQFIEQKLP-FEPTAEFWEALRNYARI 459 (623)
Q Consensus 427 ~g~~e~A~~lf~~~m~-~~Pd~~ty~~Li~a~~~ 459 (623)
..++.+|++++...++ .+.|...-..+|.-+..
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 8899999999987444 34466555566655544
No 292
>KOG4368 consensus Predicted RNA binding protein, contains SWAP, RPR and G-patch domains [General function prediction only]
Probab=86.78 E-value=4 Score=44.79 Aligned_cols=27 Identities=15% Similarity=0.074 Sum_probs=15.3
Q ss_pred CCCCCCCCCCCCCccccchhhhhhhhh
Q 044791 67 QSPLSDSRAFPDQSNFNNNQWASQQEQ 93 (623)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (623)
......+.+.+++++.++++|++++.+
T Consensus 300 gdH~h~~~~~p~dq~hpqA~~~~~~~p 326 (757)
T KOG4368|consen 300 GPHDQIPPNKPFDQPHPVAPWGQQQPP 326 (757)
T ss_pred CcccccCCCCCCCCCCCCCCCCCCCCc
Confidence 333334445556666666778777433
No 293
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.22 E-value=26 Score=33.26 Aligned_cols=131 Identities=15% Similarity=0.076 Sum_probs=91.3
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhhcCChH--HH-----H
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLV-LNNKVIEMYGKCGSMTDARRVFDHMADRSMD--SW-----H 347 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~--ty-----n 347 (623)
....|..-++. +..+..++|+.-|..+.+.|...-.+ .---+.......|+..+|...|+++-.-..+ .. -
T Consensus 58 sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 34567666664 45677899999999999987653221 1122344566789999999999998653222 11 1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 348 LMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
--...+...|-|+......+-+-..|-..-...-..|.-+-.+.|++.+|...|..+..+
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 112236778899998888877766655555566677877888999999999999988864
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=86.08 E-value=1.4 Score=29.86 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhh
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMA 339 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~ 339 (623)
+|+.|..+|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 47788889999999999999988743
No 295
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.04 E-value=48 Score=35.05 Aligned_cols=126 Identities=14% Similarity=0.087 Sum_probs=87.0
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-------CChH---
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQSTI-----RGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD-------RSMD--- 344 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~-----~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~-------~~~~--- 344 (623)
.-+|..+....+.++.+++.|+...+... .....+|-.|...|.+..++++|.-...+..+ .|+.
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 34466677777889999999988765321 12357889999999999999998766554432 3433
Q ss_pred ---HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHH----HHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 345 ---SWHLMINGYADNGLGDEGLQLFEQMRKLGL-QPNEQT----FLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 345 ---tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~-~Pd~~t----y~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
+..-|..++...|+...|.+.-+|..+..+ .-|..+ .-.+.+.|...|+.|.|+.-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 233355567888998888888877653321 124333 4556677888999999998887655
No 296
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=85.28 E-value=47 Score=33.95 Aligned_cols=213 Identities=14% Similarity=0.131 Sum_probs=122.2
Q ss_pred HHcCCHHHHHHHHHc------CCCCCH------HHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCCCC-----
Q 044791 257 CQEGKVKEAIELMDK------GVKADA------SCFYTLFELCGNPKWYENAKKVHDYFLQS--------TIRGD----- 311 (623)
Q Consensus 257 ~~~g~~~~A~~l~~~------~~~pd~------~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~--------g~~pd----- 311 (623)
.+.|+++.|..++.+ ...|+. ..|+.-...+.+..+++.|...+++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 478999999999854 233443 23444444444443888888887765543 12333
Q ss_pred HHHHHHHHHHHHHcCCHH---HHHHHHHHhhc--CC-hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044791 312 LVLNNKVIEMYGKCGSMT---DARRVFDHMAD--RS-MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVF 385 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~---~A~~lf~~m~~--~~-~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li 385 (623)
..+...|+.+|...+..+ +|.++++.+.. ++ ...|-.-|..+.+.++.+++.+.+.+|+..- .-....+..++
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 356677888888877654 56666666643 23 4466677778888999999999999999762 22334455444
Q ss_pred HHH---HhcCCHHHHHHHHHHHHhhcCCCCCccch--hhHHHH-H--Hhc------CCHHHHHHHHHh---hCCCCCCHH
Q 044791 386 SAC---GSADAIEEAFIHFESMKSEFGISPGTEHY--LGLVGV-L--GKC------GHLFEAQQFIEQ---KLPFEPTAE 448 (623)
Q Consensus 386 ~a~---~~~g~~e~A~~l~~~m~~~~g~~p~~~ty--~~Li~~-~--~k~------g~~e~A~~lf~~---~m~~~Pd~~ 448 (623)
..+ .... .+.|...++.+... .+.+....+ ..++.. + ... ++++.+.++++. .....-+..
T Consensus 163 ~~i~~l~~~~-~~~a~~~ld~~l~~-r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~ 240 (278)
T PF08631_consen 163 HHIKQLAEKS-PELAAFCLDYLLLN-RFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAE 240 (278)
T ss_pred HHHHHHHhhC-cHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHH
Confidence 444 4433 35666666666654 455443211 111111 1 111 125555556664 122222322
Q ss_pred H--------HHHHHHHHHHcCChhHHHHHHHHH
Q 044791 449 F--------WEALRNYARIHGDIDLEDHAEELM 473 (623)
Q Consensus 449 t--------y~~Li~a~~~~g~~~~A~~~~~~~ 473 (623)
+ |+.. ..+.+.++++.|.+.++..
T Consensus 241 ~~~a~~~LLW~~~-~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 241 AASAIHTLLWNKG-KKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHHHHHHHHHH-HHHHhhcCHHHHHHHHHHH
Confidence 2 3332 2355688899888877754
No 297
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.16 E-value=34 Score=32.23 Aligned_cols=55 Identities=16% Similarity=0.103 Sum_probs=22.6
Q ss_pred hHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 419 GLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 419 ~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
.+++.+...|++-+|+++.+. .. .-+......++.+..+.+|...-..+++.+.+
T Consensus 94 ~iievLL~~g~vl~ALr~ar~-~~-~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQ-YH-KVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHH-cC-CcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444555555555555444 21 01112223344444444444434444444433
No 298
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=84.52 E-value=17 Score=37.74 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhh---cCCCCCccch
Q 044791 380 TFLAVFSACGSADAIEEAFIHFESMKSE---FGISPGTEHY 417 (623)
Q Consensus 380 ty~~li~a~~~~g~~e~A~~l~~~m~~~---~g~~p~~~ty 417 (623)
.+......||+.|+-+.|++.+....++ .|.+.|+..+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~ 146 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFY 146 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHH
Confidence 4444555666666666666655544332 1444454433
No 299
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=84.27 E-value=36 Score=32.09 Aligned_cols=128 Identities=14% Similarity=0.103 Sum_probs=78.4
Q ss_pred HHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHH
Q 044791 268 LMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWH 347 (623)
Q Consensus 268 l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn 347 (623)
+.+.++.++...|..+++.+.+.|++.. +..++..++-+|......++-.+.. ....+..+=-.|.++=-..+.
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~~~~~ 93 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLGTAYE 93 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhhhhHH
Confidence 3456788888888888888888887554 3445555666666555444433332 233444444445444334677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 348 LMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
.++..+...|++-+|+++.+..... +......++.+..+.+|...=..+|.-..
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7888888888888888887765321 22233456677667666555555554444
No 300
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=83.80 E-value=29 Score=33.37 Aligned_cols=168 Identities=9% Similarity=0.059 Sum_probs=83.1
Q ss_pred CCCCCHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHhhcC--
Q 044791 272 GVKADASCFYTLFELCGN----PKWYENAKKVHDYFLQSTIRGDLV----LNNKVIEMYGKCGSMTDARRVFDHMADR-- 341 (623)
Q Consensus 272 ~~~pd~~ty~~Ll~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~----~y~~Li~~y~k~g~~~~A~~lf~~m~~~-- 341 (623)
|+.+|...++-++..+.. .+.++.+.++-.+....++..+.. ..-+-|..|-+.|||.+--.+|-..+..
T Consensus 3 Gm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~~gce 82 (233)
T PF14669_consen 3 GMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVKMGCE 82 (233)
T ss_pred cccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHHhhcC
Confidence 566677777777665543 345555556555655555554322 2223344455556666655555433211
Q ss_pred ---ChHH-HHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 044791 342 ---SMDS-WHLMINGYADNG--LGDEGLQLFEQMRKLGLQPNEQ-------TFLAVFSACGSADAIEEAFIHFESMKSEF 408 (623)
Q Consensus 342 ---~~~t-yn~Li~~~~~~g--~~eeA~~l~~eM~~~g~~Pd~~-------ty~~li~a~~~~g~~e~A~~l~~~m~~~~ 408 (623)
|..- ...+..++.+.- +..--+..|.+.+-....-|.+ +=.+++-.|-+.-++.++.++++.|-+-.
T Consensus 83 ~~~dlq~~~~~va~~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~LGRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~ 162 (233)
T PF14669_consen 83 KFADLQRFCACVAEALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLLGRIGISLMYSYHKTLQWSKGRKVLDKLHELQ 162 (233)
T ss_pred CHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHHhcCCccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1111 111111111111 1111122222322222222221 22355666777778888888887776420
Q ss_pred -------C------CCCCccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 409 -------G------ISPGTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 409 -------g------~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
| ..+-....|.-...+.+.|.+|.|+.++++
T Consensus 163 i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 163 IHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred hhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 1 122334556666778888888888888877
No 301
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=83.53 E-value=73 Score=35.23 Aligned_cols=166 Identities=9% Similarity=0.016 Sum_probs=118.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC--hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 310 GDLVLNNKVIEMYGKCGSMTDARRVFDHMADRS--MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387 (623)
Q Consensus 310 pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~--~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a 387 (623)
.|....-+++..+...-.+.-++.+..+|.+-+ -..|-.++..|..+ .-+.-..+|+++++..+ |.+.+.--+..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df--nDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF--NDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc--hhHHHHHHHHH
Confidence 355566788999999888999999999998644 44899999999999 56899999999998744 45555555555
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCC------ccchhhHHHHHHhcCCHHHHHHHHHh---hCCCCCCHHHHHHHHHHHH
Q 044791 388 CGSADAIEEAFIHFESMKSEFGISPG------TEHYLGLVGVLGKCGHLFEAQQFIEQ---KLPFEPTAEFWEALRNYAR 458 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~~~g~~p~------~~ty~~Li~~~~k~g~~e~A~~lf~~---~m~~~Pd~~ty~~Li~a~~ 458 (623)
+.+.++.+.+..+|..+..+ +-|. ...|..|+..- ..+.|..+.+..+ ..+...-.+.+.-+-.-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55669999999999888753 2221 12344444322 2456666666555 1333445567777778888
Q ss_pred HcCChhHHHHHHHHHHhcCCCCCC
Q 044791 459 IHGDIDLEDHAEELMVDLDPSKAD 482 (623)
Q Consensus 459 ~~g~~~~A~~~~~~~~~m~~~~~~ 482 (623)
...++++|.+++..+.+.+.+++-
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~~~ 240 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKDVW 240 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchhhh
Confidence 899999999999988888777654
No 302
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.38 E-value=0.31 Score=44.34 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=24.9
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044791 284 FELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFD 336 (623)
Q Consensus 284 l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~ 336 (623)
+..+.+.+.......+++.+.+.+..-+....+.|+..|++.++.++.+++++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 44444445555555555555544433445555555555555544444444433
No 303
>PF13388 DUF4106: Protein of unknown function (DUF4106)
Probab=82.80 E-value=2.5 Score=42.38 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=13.8
Q ss_pred CCHHHHHHHHHcC-CCCCHHHHH
Q 044791 260 GKVKEAIELMDKG-VKADASCFY 281 (623)
Q Consensus 260 g~~~~A~~l~~~~-~~pd~~ty~ 281 (623)
.++.+|+.-|++| -.|+.++|.
T Consensus 285 drykeai~kfk~gntdpnlfsfm 307 (422)
T PF13388_consen 285 DRYKEAIRKFKEGNTDPNLFSFM 307 (422)
T ss_pred HHHHHHHHHhhcCCCCchHHHHH
Confidence 4577788777765 346655553
No 304
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=82.41 E-value=8.7 Score=39.29 Aligned_cols=76 Identities=18% Similarity=0.269 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hcCCCCCccchhh
Q 044791 344 DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS----EFGISPGTEHYLG 419 (623)
Q Consensus 344 ~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~----~~g~~p~~~ty~~ 419 (623)
.++..++..+...|+++.+.+.++++.... .-+...|..+|.+|...|+...|+..|+.+.+ ..|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 367777788888888888888888887753 23677888888888888888888888777664 2355555544443
Q ss_pred H
Q 044791 420 L 420 (623)
Q Consensus 420 L 420 (623)
.
T Consensus 233 y 233 (280)
T COG3629 233 Y 233 (280)
T ss_pred H
Confidence 3
No 305
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=82.36 E-value=19 Score=32.54 Aligned_cols=56 Identities=11% Similarity=0.118 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 382 LAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 382 ~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
...++++...|+-|.-.+++.++.+ +-.++....-.+..+|.+.|...+|.+++.+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 3445555556666666666655542 2334444445556666666666666666555
No 306
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.28 E-value=3.5 Score=45.74 Aligned_cols=99 Identities=14% Similarity=0.031 Sum_probs=64.2
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHH
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFE 432 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~ 432 (623)
....|+++.|..++...- -..-+.++.-+.+.|..++|+++-- |... -.+...+.|+++.
T Consensus 596 ~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s~----------D~d~---rFelal~lgrl~i 655 (794)
T KOG0276|consen 596 LVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELST----------DPDQ---RFELALKLGRLDI 655 (794)
T ss_pred HhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcCC----------Chhh---hhhhhhhcCcHHH
Confidence 344566666666554332 2234556666777777777765432 2111 1334567788888
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 433 AQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 433 A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
|.++..+ .-+..-|..|.++....|++..|.+++....+
T Consensus 656 A~~la~e----~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 656 AFDLAVE----ANSEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred HHHHHHh----hcchHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 8888777 34677888888888888888888888776544
No 307
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=82.19 E-value=16 Score=42.11 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=43.5
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHH---HcCCCCCHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCCCCH
Q 044791 246 LPPSVADLARLCQEGKVKEAIELM---DKGVKADASCFYTLFELCGNPKW-------YENAKKVHDYFLQSTIRGDL 312 (623)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~A~~l~---~~~~~pd~~ty~~Ll~~~~~~g~-------~~~A~~l~~~m~~~g~~pd~ 312 (623)
-...|.+|--|.|.|++++|.++. +.........|...+..|+...+ -+....-|++..+.....|.
T Consensus 111 ~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~Dp 187 (613)
T PF04097_consen 111 GDPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDP 187 (613)
T ss_dssp TEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-H
T ss_pred CCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCCh
Confidence 356778999999999999999999 34556666678888998877532 23455556665554332253
No 308
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=82.08 E-value=3.9 Score=28.90 Aligned_cols=28 Identities=11% Similarity=0.030 Sum_probs=17.6
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQS 306 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~ 306 (623)
++..+..+|...|++++|+++|+++++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4555666666666666666666666664
No 309
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=81.96 E-value=5.3 Score=28.21 Aligned_cols=27 Identities=26% Similarity=0.461 Sum_probs=14.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
|..+..+|.+.|++++|+++|+++++.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 444555555555555555555555543
No 310
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=81.57 E-value=22 Score=34.40 Aligned_cols=89 Identities=16% Similarity=0.093 Sum_probs=43.2
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchh-hH---HHHH
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQP----NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYL-GL---VGVL 424 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~P----d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~-~L---i~~~ 424 (623)
+.++|++++|..-|.+.++.-... -.+.|..-..++.+.+.++.|++--...+ .+.| ||+ +| ..+|
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~p---ty~kAl~RRAeay 178 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNP---TYEKALERRAEAY 178 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCc---hhHHHHHHHHHHH
Confidence 455566666666665555431110 12334444445555566655555443333 2222 122 11 2345
Q ss_pred HhcCCHHHHHHHHHhhCCCCCCH
Q 044791 425 GKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 425 ~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
-+..++++|++=|.++++..|..
T Consensus 179 ek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcch
Confidence 66666777777776645555544
No 311
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.31 E-value=31 Score=38.67 Aligned_cols=150 Identities=13% Similarity=0.000 Sum_probs=100.0
Q ss_pred HHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044791 257 CQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFD 336 (623)
Q Consensus 257 ~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~ 336 (623)
.-.|+++.|-.++-.-. ...-+.++.-+.+.|-.++|+++- +|..- -.....+.|+++.|..+..
T Consensus 597 vmrrd~~~a~~vLp~I~---k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP---KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAV 661 (794)
T ss_pred hhhccccccccccccCc---hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHH
Confidence 44567777755442211 234556666667777777666542 23222 1234457799999988765
Q ss_pred HhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccc
Q 044791 337 HMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEH 416 (623)
Q Consensus 337 ~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~t 416 (623)
+. .+..-|..|.++....|++..|.+.|.+... |..|+..+...|+-+....+-...++. |..
T Consensus 662 e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~-g~~----- 724 (794)
T KOG0276|consen 662 EA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQ-GKN----- 724 (794)
T ss_pred hh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhh-ccc-----
Confidence 44 4667899999999999999999999887654 556777777778877666555555544 442
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHh
Q 044791 417 YLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 417 y~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
|.-.-+|...|+++++.+++.+
T Consensus 725 -N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 725 -NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred -chHHHHHHHcCCHHHHHHHHHh
Confidence 2334467788999999999988
No 312
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.83 E-value=56 Score=31.58 Aligned_cols=126 Identities=7% Similarity=0.016 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHhhcCC-hHHHH-----HH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNK--VIEMYGKCGSMTDARRVFDHMADRS-MDSWH-----LM 349 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~--Li~~y~k~g~~~~A~~lf~~m~~~~-~~tyn-----~L 349 (623)
..|..++.+... +.. +.....+.+....-.-..-++.+ +...+..+|++++|+.-++...... -..+. -|
T Consensus 55 ~~Y~~~i~~~~a-k~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRL 132 (207)
T COG2976 55 AQYQNAIKAVQA-KKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRL 132 (207)
T ss_pred HHHHHHHHHHhc-CCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 446666665532 222 34444444444321211122222 2344566677777777776554221 11222 23
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 350 INGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 350 i~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
.......|.+|+|+.+++...+.+.. ......-.+.+...|+-++|+.-|+.....
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 34456667777777777665554321 122233345566666666776666666543
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=80.75 E-value=3.2 Score=28.31 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~ 371 (623)
+++.|...|...|++++|+.++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 566666666666666666666666553
No 314
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=80.72 E-value=52 Score=33.37 Aligned_cols=151 Identities=16% Similarity=0.154 Sum_probs=67.9
Q ss_pred HcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH-HHH
Q 044791 258 QEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKK----VHDYFLQSTIRGDLVLNNKVIEMYGKCGSMT-DAR 332 (623)
Q Consensus 258 ~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~----l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~-~A~ 332 (623)
+.+++++|++++-.| ...+.+.|....|-+ +++-..+.+...|......|+..+...+.-+ +-.
T Consensus 2 ~~kky~eAidLL~~G-----------a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSG-----------ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 567888888877443 122233333333332 2333334455556555556665555443221 112
Q ss_pred HHHHHhh---------cCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044791 333 RVFDHMA---------DRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFES 403 (623)
Q Consensus 333 ~lf~~m~---------~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~ 403 (623)
++.+.+. ..+......+...|.+.|++.+|...|-. |-.++...+..++..+...|...++--++-+
T Consensus 71 ~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~----~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~R 146 (260)
T PF04190_consen 71 KFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLL----GTDPSAFAYVMLLEEWSTKGYPSEADLFIAR 146 (260)
T ss_dssp HHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHT----S-HHHHHHHHHHHHHHHHHTSS--HHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHh----cCChhHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence 2222221 12445777777888888888887776532 1222333333344433333443333222211
Q ss_pred HHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 404 MKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 404 m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
.+-.|.-.|++..|..+++.
T Consensus 147 ----------------aVL~yL~l~n~~~A~~~~~~ 166 (260)
T PF04190_consen 147 ----------------AVLQYLCLGNLRDANELFDT 166 (260)
T ss_dssp ----------------HHHHHHHTTBHHHHHHHHHH
T ss_pred ----------------HHHHHHHhcCHHHHHHHHHH
Confidence 22335556777777766655
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.71 E-value=95 Score=36.07 Aligned_cols=90 Identities=19% Similarity=0.364 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHH
Q 044791 360 DEGLQLFEQMRKLGLQP-----NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQ 434 (623)
Q Consensus 360 eeA~~l~~eM~~~g~~P-----d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~ 434 (623)
+..+.+|.+.....+-| ..+-....+..|.+.|-+++-.-++.+|- .++.+|.-.--+.+++++|+
T Consensus 611 dk~I~LYAEyDrk~LLPFLr~s~~Y~lekA~eiC~q~~~~~E~VYlLgrmG---------n~k~AL~lII~el~die~AI 681 (846)
T KOG2066|consen 611 DKQIELYAEYDRKKLLPFLRKSQNYNLEKALEICSQKNFYEELVYLLGRMG---------NAKEALKLIINELRDIEKAI 681 (846)
T ss_pred hHHHHHHHHHhHhhhhHHHHhcCCCCHHHHHHHHHhhCcHHHHHHHHHhhc---------chHHHHHHHHHHhhCHHHHH
Confidence 55677777765544433 11233445666666666777666666663 23455555555667777777
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCC
Q 044791 435 QFIEQKLPFEPTAEFWEALRNYARIHGD 462 (623)
Q Consensus 435 ~lf~~~m~~~Pd~~ty~~Li~a~~~~g~ 462 (623)
++.++ .-|...|..||+.....-.
T Consensus 682 efvKe----q~D~eLWe~LI~~~ldkPe 705 (846)
T KOG2066|consen 682 EFVKE----QDDSELWEDLINYSLDKPE 705 (846)
T ss_pred HHHHh----cCCHHHHHHHHHHhhcCcH
Confidence 77777 5678888888887664433
No 316
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.68 E-value=3.9 Score=42.40 Aligned_cols=93 Identities=18% Similarity=0.159 Sum_probs=63.4
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCC
Q 044791 351 NGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGH 429 (623)
Q Consensus 351 ~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~ 429 (623)
+.|.+.|+++||+..|..-.. +.| +.++|..-..+|.+..++..|+.-.+..+.- + ..-+..|.--+.+-...|.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-D-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-h-HHHHHHHHHHHHHHHHHhh
Confidence 679999999999999988665 466 8899999999999999988777665555421 0 0012223333333333466
Q ss_pred HHHHHHHHHhhCCCCCCH
Q 044791 430 LFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 430 ~e~A~~lf~~~m~~~Pd~ 447 (623)
.++|.+-++.+++++|+.
T Consensus 181 ~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKN 198 (536)
T ss_pred HHHHHHhHHHHHhhCccc
Confidence 777777777767778874
No 317
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=80.18 E-value=75 Score=32.64 Aligned_cols=110 Identities=15% Similarity=0.225 Sum_probs=81.1
Q ss_pred cCChHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHH
Q 044791 356 NGLGDEGLQLFEQMRK-LGLQPNEQTFLAVFSACGS--ADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFE 432 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~-~g~~Pd~~ty~~li~a~~~--~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~ 432 (623)
+..+.+|+.+|+.... ..+--|..+...++..... ...+..-.++.+-+...++-.++..+...+|+.+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3346677777773221 2344566667677776554 234555567777777777788888889999999999999999
Q ss_pred HHHHHHhhCC---CCCCHHHHHHHHHHHHHcCChhH
Q 044791 433 AQQFIEQKLP---FEPTAEFWEALRNYARIHGDIDL 465 (623)
Q Consensus 433 A~~lf~~~m~---~~Pd~~ty~~Li~a~~~~g~~~~ 465 (623)
-.++++...+ ..-|...|..+|+.....||...
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~ 256 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV 256 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH
Confidence 9999999333 23477899999999999999863
No 318
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=80.10 E-value=80 Score=32.88 Aligned_cols=51 Identities=20% Similarity=0.167 Sum_probs=29.8
Q ss_pred HHHHHHcCCHHHHHHHHHcCC--CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 044791 253 LARLCQEGKVKEAIELMDKGV--KADASCFYTLFELCGNPKWYENAKKVHDYFLQ 305 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~~--~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~ 305 (623)
..+.-+.|+|+...++....- .++...|.++... +.++++++..+.+.+..
T Consensus 5 ~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~ 57 (352)
T PF02259_consen 5 AEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQ 57 (352)
T ss_pred HHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence 455667778877555554322 2344444444444 66777777777766654
No 319
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=79.94 E-value=76 Score=33.05 Aligned_cols=32 Identities=28% Similarity=0.404 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 446 TAEFWEALRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 446 d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
...+|..+...+.+.|.++.|..++..+....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~ 176 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLN 176 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccC
Confidence 44678888889999999998888888877755
No 320
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=79.86 E-value=0.57 Score=54.90 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=8.8
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 044791 118 PNRGYPNQGQRLPIQGQAY 136 (623)
Q Consensus 118 ~~~~~~~~~~~~p~~~~~~ 136 (623)
|-||++.+..+.-+.+.+.
T Consensus 1468 p~p~~l~~~g~~~~~~~~y 1486 (1517)
T KOG1883|consen 1468 PYPGFLHPSGPVGHVPMQY 1486 (1517)
T ss_pred CCCccccccccccccchhh
Confidence 3344565555554344333
No 321
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=79.81 E-value=42 Score=34.91 Aligned_cols=95 Identities=16% Similarity=0.140 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH----HcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhhcCCCCC----cc
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMR----KLGLQPNEQTFLAVFSA-CGSADAIEEAFIHFESMKSEFGISPG----TE 415 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~----~~g~~Pd~~ty~~li~a-~~~~g~~e~A~~l~~~m~~~~g~~p~----~~ 415 (623)
.+-....-||+-|+-+.|++.+.+-. ..|.+.|++-+.+-+.. |....-+.+-++..+.+.++ |.+-+ ..
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~-GgDWeRrNRlK 184 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE-GGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCChhhhhhHH
Confidence 67777788999999999998887765 45778888766554433 34444455555555566655 54433 23
Q ss_pred chhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 416 HYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 416 ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
+|-.|- +....++.+|-.+|-+++.
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vs 209 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVS 209 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcc
Confidence 444432 2235789999999988554
No 322
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.61 E-value=14 Score=38.01 Aligned_cols=100 Identities=9% Similarity=0.084 Sum_probs=65.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-ChH-----HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 044791 307 TIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR-SMD-----SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQT 380 (623)
Q Consensus 307 g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-~~~-----tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~t 380 (623)
|..-...+...++..-....++++|+..+-+++.. +.. +-.+.+..| ..-+.++++-++..=..-|+-||-.|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence 44445556666666666667777777777666532 110 111222222 23356788888877778888888888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 381 FLAVFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 381 y~~li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
++.+|+.+.+.+++.+|..+.-.|...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888888777666643
No 323
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=79.48 E-value=3.7 Score=28.03 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 044791 312 LVLNNKVIEMYGKCGSMTDARRVFDHMA 339 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~~A~~lf~~m~ 339 (623)
..+++.|..+|...|++++|+.++++..
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 4577888888888888888888887764
No 324
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.21 E-value=1.4 Score=39.98 Aligned_cols=83 Identities=13% Similarity=0.131 Sum_probs=48.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcC
Q 044791 349 MINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCG 428 (623)
Q Consensus 349 Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g 428 (623)
+|..+.+.+..+.+..+++.+...+..-+....+.++..|++.++.++.+++++... + .-...++..+.+.|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~-----yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---N-----YDLDKALRLCEKHG 84 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---S-----S-CTHHHHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---c-----cCHHHHHHHHHhcc
Confidence 445555566666666777777665555556666777777777766666665554111 1 22234566666666
Q ss_pred CHHHHHHHHHh
Q 044791 429 HLFEAQQFIEQ 439 (623)
Q Consensus 429 ~~e~A~~lf~~ 439 (623)
.+++|.-++.+
T Consensus 85 l~~~a~~Ly~~ 95 (143)
T PF00637_consen 85 LYEEAVYLYSK 95 (143)
T ss_dssp SHHHHHHHHHC
T ss_pred hHHHHHHHHHH
Confidence 66666666666
No 325
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=79.18 E-value=9.6 Score=32.63 Aligned_cols=61 Identities=20% Similarity=0.232 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHH
Q 044791 361 EGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGV 423 (623)
Q Consensus 361 eA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~ 423 (623)
+..+-+..+....+.|+.....+.|.||.+.+++..|.++|+.++.+.|-. ...|..++.-
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lqE 88 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHHH
Confidence 445555666667788999999999999999999999999998888765433 3367776643
No 326
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=79.05 E-value=24 Score=39.24 Aligned_cols=128 Identities=15% Similarity=0.128 Sum_probs=71.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhc--CChH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 315 NNKVIEMYGKCGSMTDARRVFDHMAD--RSMD---SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG 389 (623)
Q Consensus 315 y~~Li~~y~k~g~~~~A~~lf~~m~~--~~~~---tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~ 389 (623)
...|+.-|.+.+++++|+.++..|.= .+.. +.+.+.+.+.+..--++.+..++.+...-..|..-.-...+..|.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~ 490 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYR 490 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHH
Confidence 34577899999999999999999862 2333 444455666666656777777777775544343222222222222
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 044791 390 SADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLED 467 (623)
Q Consensus 390 ~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~ 467 (623)
. -=.+-|.++|.. +.+.+++++|..+--+ ++ +...|--+-..-...|+.+.|.
T Consensus 491 d-~V~~~aRRfFhh--------------------LLR~~rfekAFlLAvd-i~---~~DLFmdlh~~A~~~ge~~La~ 543 (545)
T PF11768_consen 491 D-PVSDLARRFFHH--------------------LLRYQRFEKAFLLAVD-IG---DRDLFMDLHYLAKDKGELALAE 543 (545)
T ss_pred H-HHHHHHHHHHHH--------------------HHHhhHHHHHHHHHHh-cc---chHHHHHHHHHHHhccchhhhh
Confidence 1 111223333433 4455778888777766 55 2223333333334556665554
No 327
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=78.99 E-value=9.4 Score=32.37 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=46.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHH
Q 044791 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVG 422 (623)
Q Consensus 358 ~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~ 422 (623)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.|. +...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34456666677777778888888889999999999999999999887755333 3445666553
No 328
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=78.99 E-value=1.4 Score=29.58 Aligned_cols=26 Identities=27% Similarity=0.429 Sum_probs=14.8
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCChhHH
Q 044791 441 LPFEP-TAEFWEALRNYARIHGDIDLE 466 (623)
Q Consensus 441 m~~~P-d~~ty~~Li~a~~~~g~~~~A 466 (623)
+++.| +...|+.|...|...|+.++|
T Consensus 6 ie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 6 IELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 44444 445666666666666666654
No 329
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=78.98 E-value=2.7 Score=28.13 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHH
Q 044791 311 DLVLNNKVIEMYGKCGSMTDAR 332 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~ 332 (623)
|..+|+.|..+|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5667777777777777777765
No 330
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.54 E-value=28 Score=33.56 Aligned_cols=88 Identities=13% Similarity=0.033 Sum_probs=69.1
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHhhcCChHH--HHHHHHHHHH
Q 044791 283 LFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNN-----KVIEMYGKCGSMTDARRVFDHMADRSMDS--WHLMINGYAD 355 (623)
Q Consensus 283 Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~-----~Li~~y~k~g~~~~A~~lf~~m~~~~~~t--yn~Li~~~~~ 355 (623)
+...+...+++++|+.-++..+.. .-| ..+. .|.......|.+|+|+.+++...+.+-.. ...-.+.+..
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~--t~D-e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~ 171 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ--TKD-ENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc--chh-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHH
Confidence 445778899999999999887653 222 2232 35567778899999999999998887664 4555677999
Q ss_pred cCChHHHHHHHHHHHHcC
Q 044791 356 NGLGDEGLQLFEQMRKLG 373 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~~g 373 (623)
.|+-++|..-|++.++.+
T Consensus 172 kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 172 KGDKQEARAAYEKALESD 189 (207)
T ss_pred cCchHHHHHHHHHHHHcc
Confidence 999999999999999875
No 331
>PRK10263 DNA translocase FtsK; Provisional
Probab=78.30 E-value=4.2 Score=49.64 Aligned_cols=9 Identities=33% Similarity=0.405 Sum_probs=4.2
Q ss_pred eeeeehhcc
Q 044791 43 LTLSLAKTL 51 (623)
Q Consensus 43 ~~~~~~~~~ 51 (623)
|.|+=.|.|
T Consensus 727 ~~~~p~~~~ 735 (1355)
T PRK10263 727 FEFSPMKAL 735 (1355)
T ss_pred cccCchhhh
Confidence 444444553
No 332
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=78.24 E-value=12 Score=38.98 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=30.5
Q ss_pred HHHHHHcCCHHHHHHHHHcCCC--C-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 044791 253 LARLCQEGKVKEAIELMDKGVK--A-DASCFYTLFELCGNPKWYENAKKVHDYFLQ 305 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~~~--p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~ 305 (623)
...|.+.|++++|++.|.+++. | +.+++..-..+|.+..++..|+.=....+.
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4456666666666666665433 3 445666666666666666655555444433
No 333
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=77.04 E-value=99 Score=34.79 Aligned_cols=181 Identities=14% Similarity=0.085 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMADRS---MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a 387 (623)
+..+|..-++.-.+.|+.+.+.-+|+....+- ..-|--.+.-....|+.+-|..++....+-.++-...+- .+-.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~-L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIH-LLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHH-HHHHH
Confidence 46889999999999999999999999886542 224555555555559999888888777665443222222 22222
Q ss_pred -HHhcCCHHHHHHHHHHHHhhcCCCCCcc-chhhHHHHHHhcCCHHHHH---HHHHhhCCCCCCHHHHHHHH----H-HH
Q 044791 388 -CGSADAIEEAFIHFESMKSEFGISPGTE-HYLGLVGVLGKCGHLFEAQ---QFIEQKLPFEPTAEFWEALR----N-YA 457 (623)
Q Consensus 388 -~~~~g~~e~A~~l~~~m~~~~g~~p~~~-ty~~Li~~~~k~g~~e~A~---~lf~~~m~~~Pd~~ty~~Li----~-a~ 457 (623)
+-..|+++.|..+++.+..+ + |+.+ .-..-+....+.|.++.+. +++.......-+.-+...+. . -+
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~ 451 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY 451 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence 33468999999999999875 3 5432 2223355667788888888 55555222222222222222 2 34
Q ss_pred HHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccc
Q 044791 458 RIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLV 507 (623)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~ 507 (623)
...++.+.|..++..+.+..+ .+...|..+++-+...+
T Consensus 452 ~i~~d~~~a~~~l~~~~~~~~------------~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 452 KIREDADLARIILLEANDILP------------DCKVLYLELIRFELIQP 489 (577)
T ss_pred HHhcCHHHHHHHHHHhhhcCC------------ccHHHHHHHHHHHHhCC
Confidence 456778877777777766544 34556666666655554
No 334
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.04 E-value=83 Score=31.39 Aligned_cols=108 Identities=14% Similarity=0.094 Sum_probs=56.5
Q ss_pred cCCCCCHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHhhc---
Q 044791 271 KGVKADASC-FYTLFELCGNPKWYENAKKVHDYFLQS----T-IRGDLVLNNKVIEMYGKC-GSMTDARRVFDHMAD--- 340 (623)
Q Consensus 271 ~~~~pd~~t-y~~Ll~~~~~~g~~~~A~~l~~~m~~~----g-~~pd~~~y~~Li~~y~k~-g~~~~A~~lf~~m~~--- 340 (623)
.|-+-|..+ |....++ .+.++.++|...++..++. | +..-...+-.+...|-.. .++++|+..|+..-+
T Consensus 67 ~~skhDaat~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 67 AGSKHDAATTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred cCCchhHHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 365666654 4444444 4445777666666554432 1 111122233445555443 567777777776542
Q ss_pred ---CChH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 044791 341 ---RSMD---SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQ 379 (623)
Q Consensus 341 ---~~~~---tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ 379 (623)
.+.. ++--+...-+..+++.+|+++|++.-...+.-+..
T Consensus 146 ~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL 190 (288)
T KOG1586|consen 146 GEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL 190 (288)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 1111 22222223455678888999988887655444333
No 335
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.22 E-value=1.6e+02 Score=34.30 Aligned_cols=98 Identities=11% Similarity=0.103 Sum_probs=62.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHc--CCCCC---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044791 251 ADLARLCQEGKVKEAIELMDK--GVKAD---ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~--~~~pd---~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~ 325 (623)
.-|.-+.+.+.+++|+++.+. |..+- .......|+-+.-.|++++|-.+.-.|... +..-|.--+.-+...
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 447778899999999999874 54452 345667788888888888888887777542 445555555555555
Q ss_pred CCHHHHHHHHHHhhc----CChHHHHHHHHHHHH
Q 044791 326 GSMTDARRVFDHMAD----RSMDSWHLMINGYAD 355 (623)
Q Consensus 326 g~~~~A~~lf~~m~~----~~~~tyn~Li~~~~~ 355 (623)
+...+...+ +.. .+...|..+|..|..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 554433222 222 133366666666665
No 336
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.89 E-value=1e+02 Score=31.75 Aligned_cols=114 Identities=6% Similarity=0.121 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHHhh-----cCChHHHHHHHHHHHHcC--ChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044791 326 GSMTDARRVFDHMA-----DRSMDSWHLMINGYADNG--LGDEGLQLFEQMR-KLGLQPNEQTFLAVFSACGSADAIEEA 397 (623)
Q Consensus 326 g~~~~A~~lf~~m~-----~~~~~tyn~Li~~~~~~g--~~eeA~~l~~eM~-~~g~~Pd~~ty~~li~a~~~~g~~e~A 397 (623)
..+.+|+++|+... -.|...-..|+....... ....-.++.+-+. +.|-.++.-+...+|..+++.+++.+-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 34678888888332 234555666666666522 2222233333333 334677888889999999999999999
Q ss_pred HHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 398 FIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 398 ~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
.++++......+..-|...|..+|....+.|+..-...+.++
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 999988875434555889999999999999999999999887
No 337
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=75.46 E-value=7.1 Score=25.48 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~ 371 (623)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666554
No 338
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=75.42 E-value=1.5e+02 Score=33.47 Aligned_cols=317 Identities=14% Similarity=0.156 Sum_probs=170.4
Q ss_pred HHcCCHHHHHHHHHcCC---CCCHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc-CCC-CCHHHHHHHHHHHHHcCCHHH
Q 044791 257 CQEGKVKEAIELMDKGV---KADASCFYTLFELC-GNPKWYENAKKVHDYFLQS-TIR-GDLVLNNKVIEMYGKCGSMTD 330 (623)
Q Consensus 257 ~~~g~~~~A~~l~~~~~---~pd~~ty~~Ll~~~-~~~g~~~~A~~l~~~m~~~-g~~-pd~~~y~~Li~~y~k~g~~~~ 330 (623)
.+.|..+.+.++|++|+ ..+...|...+.-+ ...|+-+...++|+..+.. |.. -....|...|.--..++++..
T Consensus 90 ~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~ 169 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKR 169 (577)
T ss_pred HHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHH
Confidence 46789999999999754 45555666655544 4457888888999888774 432 235677888888888999999
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHH---c------CChHHHHHHHHHHHHc---------------CC----CC-CHH--
Q 044791 331 ARRVFDHMADRSMDSWHLMINGYAD---N------GLGDEGLQLFEQMRKL---------------GL----QP-NEQ-- 379 (623)
Q Consensus 331 A~~lf~~m~~~~~~tyn~Li~~~~~---~------g~~eeA~~l~~eM~~~---------------g~----~P-d~~-- 379 (623)
...+|+++.+--...|+..-.-|.+ . ...+++..+-....+. |+ .| +..
T Consensus 170 v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~ 249 (577)
T KOG1258|consen 170 VANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTE 249 (577)
T ss_pred HHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhH
Confidence 9999999987544433333332222 1 2233333332222210 00 01 001
Q ss_pred HHHHHHHH-------HHhcCCHHHHHHHHHHHHhh--cCCCC----CccchhhHHHHHHhcCCHHHHHHHHHhhCC-CCC
Q 044791 380 TFLAVFSA-------CGSADAIEEAFIHFESMKSE--FGISP----GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-FEP 445 (623)
Q Consensus 380 ty~~li~a-------~~~~g~~e~A~~l~~~m~~~--~g~~p----~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-~~P 445 (623)
..+.+-.. +-..-...+....|++-+++ +.++| +..+|..-++--.+.|+.+.+.-+|++.+- +.-
T Consensus 250 ~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~ 329 (577)
T KOG1258|consen 250 EKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL 329 (577)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh
Confidence 11111111 11112222233333333322 12233 356788888888899999999999999322 222
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHH
Q 044791 446 TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALN 525 (623)
Q Consensus 446 d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~ 525 (623)
=...|--.+.-.-..|+.+.|..++....+...... |....+.+.+.-+ .|.+ +.|..++.
T Consensus 330 Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~---------~~i~L~~a~f~e~--~~n~--------~~A~~~lq 390 (577)
T KOG1258|consen 330 YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT---------PIIHLLEARFEES--NGNF--------DDAKVILQ 390 (577)
T ss_pred hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC---------cHHHHHHHHHHHh--hccH--------HHHHHHHH
Confidence 223444444444455888877777666555433321 4444444444443 3444 58888887
Q ss_pred HHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHH---hcccC---CCCCh-h---H----HHhhHhhhcchhHHHH
Q 044791 526 QMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAY---GLIST---PARTP-L---R----IIKNLRVCGDCHNAIK 591 (623)
Q Consensus 526 ~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~---~ll~~---m~~~~-~---~----i~~~l~~~g~~~~a~~ 591 (623)
.....- |.. +....+......+.|.++.+. .+.+. ....+ + - +...+..++|.+.|..
T Consensus 391 ~i~~e~--pg~------v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~ 462 (577)
T KOG1258|consen 391 RIESEY--PGL------VEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARI 462 (577)
T ss_pred HHHhhC--Cch------hhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 765442 442 222223333444555555544 22222 11111 0 0 1223467788888888
Q ss_pred HHHHHhCCc
Q 044791 592 IMSRIVGRE 600 (623)
Q Consensus 592 l~~~~~~~~ 600 (623)
++.++.+..
T Consensus 463 ~l~~~~~~~ 471 (577)
T KOG1258|consen 463 ILLEANDIL 471 (577)
T ss_pred HHHHhhhcC
Confidence 887776543
No 339
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.14 E-value=93 Score=31.05 Aligned_cols=56 Identities=20% Similarity=0.150 Sum_probs=32.6
Q ss_pred hcCCHHHHHHHHHhhCC---CCCCHHHHHH---HHH-HHH--HcCChhHHHHHHHHHHhcCCCCCC
Q 044791 426 KCGHLFEAQQFIEQKLP---FEPTAEFWEA---LRN-YAR--IHGDIDLEDHAEELMVDLDPSKAD 482 (623)
Q Consensus 426 k~g~~e~A~~lf~~~m~---~~Pd~~ty~~---Li~-a~~--~~g~~~~A~~~~~~~~~m~~~~~~ 482 (623)
..|++.+|+++|++ +. ..-+..-|.. ++. ++| -.+|.-.+..+++...+++|....
T Consensus 166 ~leqY~~Ai~iyeq-va~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQ-VARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHHHHH-HHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 46778888888887 32 2222222221 222 222 235666677888889898887644
No 340
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.96 E-value=1.6e+02 Score=33.54 Aligned_cols=179 Identities=16% Similarity=0.052 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHhhc-------C-ChHHHHHHHHHHHHcC--
Q 044791 293 YENAKKVHDYFLQSTIRGDLVLNNKVIEM-----YGKCGSMTDARRVFDHMAD-------R-SMDSWHLMINGYADNG-- 357 (623)
Q Consensus 293 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~-----y~k~g~~~~A~~lf~~m~~-------~-~~~tyn~Li~~~~~~g-- 357 (623)
...|.++++...+.|. ...-..+..+ ++...+.+.|+..|+.+.+ . .....+-|..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 5678999998888773 3333333333 4456789999999998865 2 2335666777777743
Q ss_pred ---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHH--HhcCCHH
Q 044791 358 ---LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS-ADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVL--GKCGHLF 431 (623)
Q Consensus 358 ---~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~-~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~--~k~g~~e 431 (623)
+.+.|+.+|....+.|. |+...+...+.-... ..+...|.++|...... |..+ ...+.+++-.. .-..+.+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~~-A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-GHIL-AIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-CChH-HHHHHHHHHHhCCCcCCCHH
Confidence 66779999999888774 354444333333333 35678999999988865 5432 11121221111 1234788
Q ss_pred HHHHHHHhhCCCCCCHHHHH--HHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 432 EAQQFIEQKLPFEPTAEFWE--ALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 432 ~A~~lf~~~m~~~Pd~~ty~--~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
+|..+|.++-+.. ...+.. ..+..+.. ++.+.+.-.+..+.++.-.
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 9999998833222 222222 22223333 6777666666666666544
No 341
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.89 E-value=9.7 Score=37.31 Aligned_cols=74 Identities=14% Similarity=0.080 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCC----CCHHHHHHHH
Q 044791 380 TFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE----PTAEFWEALR 454 (623)
Q Consensus 380 ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~----Pd~~ty~~Li 454 (623)
|.+..|+.+.+.+.+.+|+.+.+.-++. +| |..+-..|+..||-.|++++|..-++.+-.+. +...+|..+|
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVka---kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li 79 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKA---KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI 79 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhc---CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence 4566778888999999999998877743 34 56666778999999999999988777622233 4457888887
Q ss_pred HH
Q 044791 455 NY 456 (623)
Q Consensus 455 ~a 456 (623)
.+
T Consensus 80 r~ 81 (273)
T COG4455 80 RC 81 (273)
T ss_pred HH
Confidence 75
No 342
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=74.83 E-value=69 Score=29.41 Aligned_cols=92 Identities=10% Similarity=0.191 Sum_probs=62.3
Q ss_pred HHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhhc---------CChHHHHHHHHHHHHcCC-hHHHHHHHHHHH
Q 044791 303 FLQSTIRGDL--VLNNKVIEMYGKCGSMTDARRVFDHMAD---------RSMDSWHLMINGYADNGL-GDEGLQLFEQMR 370 (623)
Q Consensus 303 m~~~g~~pd~--~~y~~Li~~y~k~g~~~~A~~lf~~m~~---------~~~~tyn~Li~~~~~~g~-~eeA~~l~~eM~ 370 (623)
|.+.+..++. ...|.+++-.+..+++...+.+++.+.. .+-.+|++++.+..+..- ---+..+|.-|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 3444555443 3446677766777777777777777642 233378888888866655 344667888888
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCH
Q 044791 371 KLGLQPNEQTFLAVFSACGSADAI 394 (623)
Q Consensus 371 ~~g~~Pd~~ty~~li~a~~~~g~~ 394 (623)
+.+.+.+..-|..||.++.+-...
T Consensus 108 ~~~~~~t~~dy~~li~~~l~g~~~ 131 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAALRGYFH 131 (145)
T ss_pred HcCCCCCHHHHHHHHHHHHcCCCC
Confidence 878888888888888887665333
No 343
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=74.83 E-value=67 Score=30.00 Aligned_cols=47 Identities=9% Similarity=-0.014 Sum_probs=21.7
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCccchhh-HHHHHHhcCCHHHHHHHHHh
Q 044791 390 SADAIEEAFIHFESMKSEFGISPGTEHYLG-LVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 390 ~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~-Li~~~~k~g~~e~A~~lf~~ 439 (623)
+.++.+++..++..|. -+.|....... -...+...|++++|+.+|++
T Consensus 22 ~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~ 69 (160)
T PF09613_consen 22 RLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRE 69 (160)
T ss_pred ccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455555555555554 33343221111 11224455566666666665
No 344
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=74.44 E-value=4.4 Score=47.11 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=7.6
Q ss_pred ccCCCCCCCCCCCCCC
Q 044791 57 EYNTPPPQPPQSPLSD 72 (623)
Q Consensus 57 ~~~~~~~~~~~~~~~~ 72 (623)
+++++.|.|++.+.+.
T Consensus 702 ~p~~~~~~p~~~~~~~ 717 (803)
T KOG3561|consen 702 DPQNQGPHPLTKSLPQ 717 (803)
T ss_pred CcCCCCCCCccccccc
Confidence 4555555554443333
No 345
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=74.26 E-value=21 Score=40.85 Aligned_cols=170 Identities=15% Similarity=0.195 Sum_probs=82.6
Q ss_pred HHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhhc-C---ChH-------HHHHHHHHHHHcCChHHH
Q 044791 297 KKVHDYFLQSTIRGD---LVLNNKVIEMYGKCGSMTDARRVFDHMAD-R---SMD-------SWHLMINGYADNGLGDEG 362 (623)
Q Consensus 297 ~~l~~~m~~~g~~pd---~~~y~~Li~~y~k~g~~~~A~~lf~~m~~-~---~~~-------tyn~Li~~~~~~g~~eeA 362 (623)
..++++|+..=-.|+ ..+...|+-.|....+++..+++.+.++. + +++ .|.-.++---+-|+-++|
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakA 262 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKA 262 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHH
Confidence 344555655422233 34444555556666666666666666553 1 111 233333333344666666
Q ss_pred HHHHHHHHHc--CCCCCHHH-----HHHHH--HHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHH----------
Q 044791 363 LQLFEQMRKL--GLQPNEQT-----FLAVF--SACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGV---------- 423 (623)
Q Consensus 363 ~~l~~eM~~~--g~~Pd~~t-----y~~li--~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~---------- 423 (623)
+...-.|+++ .+.||.++ |--+. +.|...+..+.|.+.|++.- .+.|...+--.+...
T Consensus 263 L~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~Fen 339 (1226)
T KOG4279|consen 263 LNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHFEN 339 (1226)
T ss_pred HHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhccc
Confidence 6666665532 25555432 22211 12334455555655554433 455543332222222
Q ss_pred --------------HHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 424 --------------LGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 424 --------------~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
+++.|.+++..++|+- ...+.+-.-.++...|..+.+.|.++.+-.
T Consensus 340 s~Elq~IgmkLn~LlgrKG~leklq~YWdV-----------~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 340 SLELQQIGMKLNSLLGRKGALEKLQEYWDV-----------ATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred hHHHHHHHHHHHHHhhccchHHHHHHHHhH-----------HHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 2333333333333332 122344445678888888888888876543
No 346
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=74.26 E-value=94 Score=30.68 Aligned_cols=191 Identities=15% Similarity=0.047 Sum_probs=103.6
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 044791 261 KVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD-LVLNNKVIEMYGKCGSMTDARRVFDHMA 339 (623)
Q Consensus 261 ~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~y~~Li~~y~k~g~~~~A~~lf~~m~ 339 (623)
+-+.|.-+|++|+-=|.. |-++.|.-=|.+.+. +.|+ ..+||-|.--+...|++|.|.+.|+...
T Consensus 61 ~eeRA~l~fERGvlYDSl------------GL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ 126 (297)
T COG4785 61 DEERAQLLFERGVLYDSL------------GLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 126 (297)
T ss_pred hHHHHHHHHHhcchhhhh------------hHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHh
Confidence 345566667777644432 223333333444444 4455 5788888888889999999999999988
Q ss_pred cCChH-HHHHHHHH--HHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhcCCCCCc
Q 044791 340 DRSMD-SWHLMING--YADNGLGDEGLQLFEQMRKLG-LQPNEQTFLAVFSACGSADAIEEAFI-HFESMKSEFGISPGT 414 (623)
Q Consensus 340 ~~~~~-tyn~Li~~--~~~~g~~eeA~~l~~eM~~~g-~~Pd~~ty~~li~a~~~~g~~e~A~~-l~~~m~~~~g~~p~~ 414 (623)
+.|.. -|..+=.| +--.|++.-|.+-|...-... -.|=...|.-++. ..-+..+|.. +.++.. +. |.
T Consensus 127 ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~~--d~ 198 (297)
T COG4785 127 ELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---KS--DK 198 (297)
T ss_pred ccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---hc--cH
Confidence 87654 34443333 445688888877666655442 2232233333322 1234445543 333333 22 22
Q ss_pred cchhhHH-HHHHhcCCHHHHHHHHHhhCCCCCC-------HHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 415 EHYLGLV-GVLGKCGHLFEAQQFIEQKLPFEPT-------AEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 415 ~ty~~Li-~~~~k~g~~e~A~~lf~~~m~~~Pd-------~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
.-|...| .-|...=..+.+.+-... .. +-+ ..||-.|..-+...|++++|..++++...
T Consensus 199 e~WG~~iV~~yLgkiS~e~l~~~~~a-~a-~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 199 EQWGWNIVEFYLGKISEETLMERLKA-DA-TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred hhhhHHHHHHHHhhccHHHHHHHHHh-hc-cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 2333322 222222122222222221 11 111 24677788888888999988888887755
No 347
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=73.71 E-value=1.3e+02 Score=33.24 Aligned_cols=206 Identities=10% Similarity=0.094 Sum_probs=107.0
Q ss_pred HHcCCHHHHHHHHHc-----CCCCCH-HHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 044791 257 CQEGKVKEAIELMDK-----GVKADA-SCFYTLFELCGNPKWY-ENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMT 329 (623)
Q Consensus 257 ~~~g~~~~A~~l~~~-----~~~pd~-~ty~~Ll~~~~~~g~~-~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~ 329 (623)
.+...+...+.+|+. +..++. .-|..+.-.++....- +.|..+..+ ++.-|...|-.-+....+...
T Consensus 332 ~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e----~f~~s~k~~~~kl~~~~~s~s-- 405 (568)
T KOG2396|consen 332 LRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTE----LFRDSGKMWQLKLQVLIESKS-- 405 (568)
T ss_pred hhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHH----HhcchHHHHHHHHHHHHhhcc--
Confidence 344456666666642 444443 3566666666655433 333333333 344566666555544443211
Q ss_pred HHHHHHHH----hh----cCChHHHHHHH-HHHHHcCChHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHH
Q 044791 330 DARRVFDH----MA----DRSMDSWHLMI-NGYADNGLGDEGLQLFEQMRKLGLQPNEQTF-LAVFSACGSADAIEEAFI 399 (623)
Q Consensus 330 ~A~~lf~~----m~----~~~~~tyn~Li-~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty-~~li~a~~~~g~~e~A~~ 399 (623)
++.-+|++ .. ..-...|+..+ ..+......+..+..+..| ..++..|+ +.+++-+.+.|-.++|..
T Consensus 406 D~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~----~~~~~~tl~s~~l~~~~e~~~~~~ark 481 (568)
T KOG2396|consen 406 DFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSV----IGADSVTLKSKYLDWAYESGGYKKARK 481 (568)
T ss_pred hhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHh----cCCceeehhHHHHHHHHHhcchHHHHH
Confidence 22233332 22 12233555554 1112222222223333332 34555555 456777778888888888
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHH---HhcCCHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 400 HFESMKSEFGISPGTEHYLGLVGVL---GKCGHLFEAQQFIEQKLP-FEPTAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 400 l~~~m~~~~g~~p~~~ty~~Li~~~---~k~g~~e~A~~lf~~~m~-~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
++..+.. --.++...|-.+|..= ..+| +..+.++|+.+.. ..-|...|...+.-=...|..+.+-.++-+...
T Consensus 482 ~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 482 VYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDLWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHHHHHHHHhhccCCCcccccHHHHHHHH
Confidence 8888773 2233566666666542 2334 7777778877332 335667776666666677777766555555443
No 348
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=73.55 E-value=8.5 Score=25.10 Aligned_cols=30 Identities=23% Similarity=0.178 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 044791 449 FWEALRNYARIHGDIDLEDHAEELMVDLDP 478 (623)
Q Consensus 449 ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~ 478 (623)
+|..+..+|...|++++|+..++...++++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 344455555555555555555555555443
No 349
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=73.43 E-value=1.2e+02 Score=31.65 Aligned_cols=48 Identities=15% Similarity=0.080 Sum_probs=22.4
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHH
Q 044791 389 GSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQF 436 (623)
Q Consensus 389 ~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~l 436 (623)
.+.|++.+|.++|+.+.++..+.--...-..||.++....-+.+...+
T Consensus 286 RklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqav 333 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAV 333 (556)
T ss_pred HHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666554422221122233455555554433333333
No 350
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.10 E-value=4.9 Score=44.54 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=11.5
Q ss_pred cCCChHHHHHHHHHhcCC
Q 044791 205 QNQGYPQARNSYQQVSPG 222 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~ 222 (623)
.+..+..|...|+...++
T Consensus 257 ~q~~L~~~~n~~ek~~k~ 274 (728)
T KOG4592|consen 257 NQQALPTALNNFEKHPKF 274 (728)
T ss_pred cHHHHHHHHhhhhhcccc
Confidence 455677777777765443
No 351
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=71.55 E-value=41 Score=31.01 Aligned_cols=47 Identities=17% Similarity=0.271 Sum_probs=32.2
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCc---cchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 390 SADAIEEAFIHFESMKSEFGISPGT---EHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 390 ~~g~~e~A~~l~~~m~~~~g~~p~~---~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
..++.+++..+++.|. -+.|+. .++... .+...|++++|..+|++ +.
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~-l~ 71 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGW--LLIARGNYDEAARILRE-LL 71 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHH--HHHHcCCHHHHHHHHHh-hh
Confidence 4788888888888877 455543 333322 36678888888888888 54
No 352
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=71.09 E-value=11 Score=24.34 Aligned_cols=29 Identities=24% Similarity=0.267 Sum_probs=15.4
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 044791 450 WEALRNYARIHGDIDLEDHAEELMVDLDP 478 (623)
Q Consensus 450 y~~Li~a~~~~g~~~~A~~~~~~~~~m~~ 478 (623)
|..+...|...|++++|++.++...++.+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 44445555555666655555555555544
No 353
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.63 E-value=46 Score=34.60 Aligned_cols=29 Identities=10% Similarity=0.149 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLG 373 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g 373 (623)
.|-.++.+|+..--.+.|+-.+++..+.|
T Consensus 301 l~kq~l~~~A~d~aieD~i~~L~~~~r~G 329 (365)
T KOG2391|consen 301 LYKQILECYALDLAIEDAIYSLGKSLRDG 329 (365)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHhcC
Confidence 34444444444444444444555544444
No 354
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.80 E-value=1.8e+02 Score=32.09 Aligned_cols=145 Identities=16% Similarity=0.070 Sum_probs=82.3
Q ss_pred HcCCHHHHHHHHHc-----CCCCC--H-----HHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHH
Q 044791 258 QEGKVKEAIELMDK-----GVKAD--A-----SCFYTLFE-LCGNPKWYENAKKVHDYFLQSTIRGDLV--LNNKVIEMY 322 (623)
Q Consensus 258 ~~g~~~~A~~l~~~-----~~~pd--~-----~ty~~Ll~-~~~~~g~~~~A~~l~~~m~~~g~~pd~~--~y~~Li~~y 322 (623)
-.|+..+|++-..+ .-.|. . .....|+. .|+..+.++.|+.-|....+.--.-|.. .-..|...|
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 47888888866532 22233 1 22333444 4456788999998887776643333433 334566778
Q ss_pred HHcCCHHHHHHHHHHhhcCChHHHHH--------HHHH--HHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHH
Q 044791 323 GKCGSMTDARRVFDHMADRSMDSWHL--------MING--YADNGLGDEGLQLFEQMRKLGLQPNE-----QTFLAVFSA 387 (623)
Q Consensus 323 ~k~g~~~~A~~lf~~m~~~~~~tyn~--------Li~~--~~~~g~~eeA~~l~~eM~~~g~~Pd~-----~ty~~li~a 387 (623)
.+.|+.++-.++++.+-..+..++.. ++.| ....+++.||..++.|-++..-.-|. -....|-..
T Consensus 415 L~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v 494 (629)
T KOG2300|consen 415 LRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHV 494 (629)
T ss_pred HHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHH
Confidence 88999888888888876554332111 1111 24567888888888887654211111 111122223
Q ss_pred HHhcCCHHHHHHHHH
Q 044791 388 CGSADAIEEAFIHFE 402 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~ 402 (623)
+...|+..++.+++.
T Consensus 495 ~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 495 FLSLGNTVESRNMVR 509 (629)
T ss_pred HHHhcchHHHHhccc
Confidence 444566666665554
No 355
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=69.14 E-value=88 Score=32.06 Aligned_cols=52 Identities=13% Similarity=0.022 Sum_probs=34.8
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHHHcCCHHHHHHH
Q 044791 283 LFELCGNPKWYENAKKVHDYFLQSTIRGDLVLN-------NKVIEMYGKCGSMTDARRV 334 (623)
Q Consensus 283 Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y-------~~Li~~y~k~g~~~~A~~l 334 (623)
+.+-..+.+++++|+.++.+++..|+..|..+. ..|...|...|+...-...
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~ 67 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDT 67 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHH
Confidence 455667778888888888888888877665433 3456666666665554433
No 356
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.97 E-value=1.9e+02 Score=31.97 Aligned_cols=88 Identities=14% Similarity=0.049 Sum_probs=56.2
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCc---c----chhhHHHHHH-hcCCHHHHHHHHHhhCCCC--CCHHHH--HHHHHHH
Q 044791 390 SADAIEEAFIHFESMKSEFGISPGT---E----HYLGLVGVLG-KCGHLFEAQQFIEQKLPFE--PTAEFW--EALRNYA 457 (623)
Q Consensus 390 ~~g~~e~A~~l~~~m~~~~g~~p~~---~----ty~~Li~~~~-k~g~~e~A~~lf~~~m~~~--Pd~~ty--~~Li~a~ 457 (623)
-.|+..+|++-+..|+.-+...|.. . ....|+..|+ ..|.++.|+.-|..++... -|...+ ..|...|
T Consensus 335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y 414 (629)
T KOG2300|consen 335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY 414 (629)
T ss_pred HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence 3699999999999998755555551 1 1223444454 4689999999998866522 233222 2344578
Q ss_pred HHcCChhHHHHHHHHHHhcCCCC
Q 044791 458 RIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
.+.|+.+ ..++.+..+.+.+
T Consensus 415 L~~~~~e---d~y~~ld~i~p~n 434 (629)
T KOG2300|consen 415 LRIGDAE---DLYKALDLIGPLN 434 (629)
T ss_pred HHhccHH---HHHHHHHhcCCCC
Confidence 8888887 5555555555543
No 357
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=68.87 E-value=28 Score=29.83 Aligned_cols=25 Identities=12% Similarity=0.324 Sum_probs=10.5
Q ss_pred HcCCHHHHHHHHHHhhcCChHHHHH
Q 044791 324 KCGSMTDARRVFDHMADRSMDSWHL 348 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~~~~~tyn~ 348 (623)
..|++++|..+.+.+.-+|++.|-+
T Consensus 51 NrG~Yq~Al~l~~~~~~pdlepw~A 75 (115)
T TIGR02508 51 NRGDYQSALQLGNKLCYPDLEPWLA 75 (115)
T ss_pred ccchHHHHHHhcCCCCCchHHHHHH
Confidence 3444444444444444444444433
No 358
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=68.53 E-value=36 Score=33.03 Aligned_cols=79 Identities=14% Similarity=-0.006 Sum_probs=43.9
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCCCCccchhhHHHHHHhcCCHH
Q 044791 354 ADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEF--GISPGTEHYLGLVGVLGKCGHLF 431 (623)
Q Consensus 354 ~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~--g~~p~~~ty~~Li~~~~k~g~~e 431 (623)
.+.|+ ++|.+.|-.+...+.--++.....|...|. ..+.++|..++....+-. +-.+|...+.+|+..|-+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 566666666666554444444444443333 456666666666555422 12445666666666666666666
Q ss_pred HHH
Q 044791 432 EAQ 434 (623)
Q Consensus 432 ~A~ 434 (623)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 664
No 359
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=68.19 E-value=1.2e+02 Score=34.83 Aligned_cols=31 Identities=29% Similarity=0.416 Sum_probs=19.4
Q ss_pred ccchhhHHHH-----HHhcCCHHHHHHHHHhhCCCCC
Q 044791 414 TEHYLGLVGV-----LGKCGHLFEAQQFIEQKLPFEP 445 (623)
Q Consensus 414 ~~ty~~Li~~-----~~k~g~~e~A~~lf~~~m~~~P 445 (623)
..|+..|++. +...|++++|++.+++ +++-|
T Consensus 500 ~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~-L~liP 535 (613)
T PF04097_consen 500 RETFQLLLDLAEFFDLYHAGQYEQALDIIEK-LDLIP 535 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH-TT-S-
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCC
Confidence 3455555443 4567889999999988 88777
No 360
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=68.16 E-value=28 Score=33.82 Aligned_cols=95 Identities=15% Similarity=0.060 Sum_probs=68.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCC---CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcC
Q 044791 386 SACGSADAIEEAFIHFESMKSEFGISP---GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAE-FWEALRNYARIHG 461 (623)
Q Consensus 386 ~a~~~~g~~e~A~~l~~~m~~~~g~~p---~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~-ty~~Li~a~~~~g 461 (623)
.-+.+.|++++|..-|.+.+..+.-.+ -...|..-..++.+.++++.|++-..+++++.|+.. ..---..+|-+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 345678999999999998885321111 134566667888999999999998888788777432 2222233777888
Q ss_pred ChhHHHHHHHHHHhcCCCC
Q 044791 462 DIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 462 ~~~~A~~~~~~~~~m~~~~ 480 (623)
.++.|.+-++.+.+.+|..
T Consensus 183 k~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSR 201 (271)
T ss_pred hHHHHHHHHHHHHHhCcch
Confidence 8999999999999987764
No 361
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=68.13 E-value=13 Score=42.57 Aligned_cols=19 Identities=5% Similarity=0.323 Sum_probs=12.1
Q ss_pred ccccccCCChHHHHHHHHHh
Q 044791 200 QWNNQQNQGYPQARNSYQQV 219 (623)
Q Consensus 200 ~w~~~~~g~~~~A~~lf~~m 219 (623)
=|...+..+++.- ++|.++
T Consensus 644 FWvkv~Edk~en~-dlfakL 662 (1102)
T KOG1924|consen 644 FWVKVNEDKLEND-DLFAKL 662 (1102)
T ss_pred eeeecchhhccch-HHHHHH
Confidence 5666655566655 777766
No 362
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=67.51 E-value=13 Score=24.12 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~ 371 (623)
+|..+...|...|++++|+..|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 345555556666666666666665544
No 363
>PF13934 ELYS: Nuclear pore complex assembly
Probab=67.44 E-value=57 Score=32.35 Aligned_cols=20 Identities=5% Similarity=-0.245 Sum_probs=9.8
Q ss_pred HHHHHhCCCCHHHHHHHHHH
Q 044791 283 LFELCGNPKWYENAKKVHDY 302 (623)
Q Consensus 283 Ll~~~~~~g~~~~A~~l~~~ 302 (623)
++.++...|+.+.|..++..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHCCChhHHHHHHHh
Confidence 44444445555555555544
No 364
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=67.28 E-value=1.2e+02 Score=32.31 Aligned_cols=126 Identities=14% Similarity=0.173 Sum_probs=65.6
Q ss_pred CCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC-----------C-
Q 044791 206 NQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG-----------V- 273 (623)
Q Consensus 206 ~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~-----------~- 273 (623)
...|.++...|......+ .|+.+... ....+.-+.+...|-..+.+.|+.+.|.+++++. +
T Consensus 7 s~~Y~~~q~~F~~~v~~~-Dp~~l~~l------l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~ 79 (360)
T PF04910_consen 7 SKAYQEAQEQFYAAVQSH-DPNALINL------LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFS 79 (360)
T ss_pred CHHHHHHHHHHHHHHHcc-CHHHHHHH------HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456777777777664333 33322221 1233344556666777788889888888876531 1
Q ss_pred ----C------------C-CHHHHHH---HHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHH
Q 044791 274 ----K------------A-DASCFYT---LFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYG-KCGSMTDAR 332 (623)
Q Consensus 274 ----~------------p-d~~ty~~---Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~-k~g~~~~A~ 332 (623)
. + |..-|-+ -|..+.+.|.+..|+++.+-+......-|....-.+|+.|+ ++++++--+
T Consensus 80 ~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li 159 (360)
T PF04910_consen 80 PFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLI 159 (360)
T ss_pred hhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHH
Confidence 0 0 1122222 23355556666666666666655433334444444455554 445555555
Q ss_pred HHHHHh
Q 044791 333 RVFDHM 338 (623)
Q Consensus 333 ~lf~~m 338 (623)
++++..
T Consensus 160 ~~~~~~ 165 (360)
T PF04910_consen 160 DFSESP 165 (360)
T ss_pred HHHHhH
Confidence 555443
No 365
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.25 E-value=2.8e+02 Score=33.25 Aligned_cols=17 Identities=6% Similarity=0.204 Sum_probs=15.0
Q ss_pred cCCChHHHHHHHHHhcC
Q 044791 205 QNQGYPQARNSYQQVSP 221 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~ 221 (623)
.+|+|++|.++|.++..
T Consensus 358 ~q~~f~ea~~~F~~~~~ 374 (877)
T KOG2063|consen 358 LQKQFEEAMSLFEKSEI 374 (877)
T ss_pred HhhhHHHHHHHHHhhcc
Confidence 78999999999998844
No 366
>PRK09687 putative lyase; Provisional
Probab=67.16 E-value=1.6e+02 Score=30.29 Aligned_cols=217 Identities=9% Similarity=0.004 Sum_probs=116.2
Q ss_pred CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----HHHHHHHHHHh--hcCChHHHH
Q 044791 274 KADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS----MTDARRVFDHM--ADRSMDSWH 347 (623)
Q Consensus 274 ~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~----~~~A~~lf~~m--~~~~~~tyn 347 (623)
.+|.......+.++...|. +++...+..+.+ ..|...-...+.+++..|+ .+++..++..+ .+++...-.
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~ 109 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRA 109 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHH
Confidence 4555566666667766664 334444444443 2355555666677777765 35677777765 345555555
Q ss_pred HHHHHHHHcCC-----hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHH
Q 044791 348 LMINGYADNGL-----GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVG 422 (623)
Q Consensus 348 ~Li~~~~~~g~-----~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~ 422 (623)
..+.++...+. ..++...+..+.. .++..+-...+.++++.++ ++|...+-.+..+ ++..+-..-+.
T Consensus 110 ~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d----~~~~VR~~A~~ 181 (280)
T PRK09687 110 SAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD----PNGDVRNWAAF 181 (280)
T ss_pred HHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC----CCHHHHHHHHH
Confidence 55555555432 1233444444333 2355555566777777776 4566665555532 33334444455
Q ss_pred HHHhcC-CHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhh
Q 044791 423 VLGKCG-HLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILD 501 (623)
Q Consensus 423 ~~~k~g-~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~ 501 (623)
++++.+ ....+...+..++. .+|...-...+.++.+.|+.. ++..+.+.-.. ++ .....+.
T Consensus 182 aLg~~~~~~~~~~~~L~~~L~-D~~~~VR~~A~~aLg~~~~~~----av~~Li~~L~~-----------~~--~~~~a~~ 243 (280)
T PRK09687 182 ALNSNKYDNPDIREAFVAMLQ-DKNEEIRIEAIIGLALRKDKR----VLSVLIKELKK-----------GT--VGDLIIE 243 (280)
T ss_pred HHhcCCCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHccCChh----HHHHHHHHHcC-----------Cc--hHHHHHH
Confidence 555543 23455555555343 556666667777777777753 22222221111 11 2345666
Q ss_pred hcCccccccCCcccchHHHHHHHHHHHH
Q 044791 502 GKSRLVEFRNPTLYRDDEKLKALNQMKE 529 (623)
Q Consensus 502 ~~~~~~~~~~~~~~~~~eal~~~~~M~~ 529 (623)
+++..|. .+|+..+..|.+
T Consensus 244 ALg~ig~---------~~a~p~L~~l~~ 262 (280)
T PRK09687 244 AAGELGD---------KTLLPVLDTLLY 262 (280)
T ss_pred HHHhcCC---------HhHHHHHHHHHh
Confidence 6666665 367777766654
No 367
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=67.04 E-value=13 Score=24.01 Aligned_cols=27 Identities=22% Similarity=0.463 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~ 371 (623)
.|..+...|...|++++|++.|++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345556666666666666666666654
No 368
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=66.74 E-value=1.5e+02 Score=34.03 Aligned_cols=157 Identities=11% Similarity=0.104 Sum_probs=95.3
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHcCCC----CCH-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHc--C--CCCCHH
Q 044791 248 PSVADLARLC-QEGKVKEAIELMDKGVK----ADA-----SCFYTLFELCGNPKWYENAKKVHDYFLQS--T--IRGDLV 313 (623)
Q Consensus 248 ~~~~li~~~~-~~g~~~~A~~l~~~~~~----pd~-----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~--g--~~pd~~ 313 (623)
+..-+...|. ...++++|+..+++++. ++. .+-..++..+.+.+... |...+++.++. + ..+=..
T Consensus 61 ~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~ 139 (608)
T PF10345_consen 61 VRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYY 139 (608)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHH
Confidence 3345555555 67899999999987532 221 22335666777776655 99998887664 1 222233
Q ss_pred HHHHH-HHHHHHcCCHHHHHHHHHHhhc-----CCh--HHHHHHHHHH--HHcCChHHHHHHHHHHHHcCC---------
Q 044791 314 LNNKV-IEMYGKCGSMTDARRVFDHMAD-----RSM--DSWHLMINGY--ADNGLGDEGLQLFEQMRKLGL--------- 374 (623)
Q Consensus 314 ~y~~L-i~~y~k~g~~~~A~~lf~~m~~-----~~~--~tyn~Li~~~--~~~g~~eeA~~l~~eM~~~g~--------- 374 (623)
.+.-| +..+...++...|++.++.+.. .|. ..+-.++.++ .+.+..+++++.++++.....
T Consensus 140 ~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~ 219 (608)
T PF10345_consen 140 AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVH 219 (608)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCC
Confidence 33434 3333344899999999988753 222 2444455553 345667888888888854332
Q ss_pred CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 044791 375 QPNEQTFLAVFSACG--SADAIEEAFIHFESMK 405 (623)
Q Consensus 375 ~Pd~~ty~~li~a~~--~~g~~e~A~~l~~~m~ 405 (623)
.|-..+|..+++.++ ..|+++.+...+.++.
T Consensus 220 ~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 220 IPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234567777777655 4677767766554443
No 369
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=65.72 E-value=2e+02 Score=31.14 Aligned_cols=28 Identities=21% Similarity=0.372 Sum_probs=16.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHcCCCCC
Q 044791 249 SVADLARLCQEGKVKEAIELMDKGVKAD 276 (623)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~l~~~~~~pd 276 (623)
...++.++....++.+-++..++|..|+
T Consensus 78 VLnvL~sLv~kS~I~e~l~~~~~~~~~~ 105 (404)
T PF10255_consen 78 VLNVLYSLVDKSQINEQLEAEKRGEDPD 105 (404)
T ss_pred HHHHHHHHHHHHhHHHHHHHhhccCCch
Confidence 3355566666666666666665554443
No 370
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.48 E-value=1.7e+02 Score=33.31 Aligned_cols=145 Identities=14% Similarity=0.097 Sum_probs=65.7
Q ss_pred HHHcCCHHHHHHHHHcCCC--------CCHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044791 256 LCQEGKVKEAIELMDKGVK--------ADASCFYTLFELCGNPK-----WYENAKKVHDYFLQSTIRGDLVLNNKVIEMY 322 (623)
Q Consensus 256 ~~~~g~~~~A~~l~~~~~~--------pd~~ty~~Ll~~~~~~g-----~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y 322 (623)
+....+++.|+.+|+.... -+....+-|..+|.+.. +.+.|+.++.+..+.|.. +.... |..+|
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~--lg~~~ 335 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYL--LGVLY 335 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHH--HHHHH
Confidence 4455666666666643211 12234445555555432 455677777666666532 33222 22222
Q ss_pred HH---cCCHHHHHHHHHHhhcCChH-HHHHHHHHHH----HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044791 323 GK---CGSMTDARRVFDHMADRSMD-SWHLMINGYA----DNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAI 394 (623)
Q Consensus 323 ~k---~g~~~~A~~lf~~m~~~~~~-tyn~Li~~~~----~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~ 394 (623)
-. ..+...|.++|...-..+-+ ++-.+..+|. -..+.++|..+|.+..++| .|.+.--...+..+.. ++.
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~ 413 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRY 413 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccc
Confidence 22 23456666666666544332 2221211111 1234566666666666665 2222222222233333 555
Q ss_pred HHHHHHHHHHH
Q 044791 395 EEAFIHFESMK 405 (623)
Q Consensus 395 e~A~~l~~~m~ 405 (623)
+.+.-.+..+.
T Consensus 414 ~~~~~~~~~~a 424 (552)
T KOG1550|consen 414 DTALALYLYLA 424 (552)
T ss_pred cHHHHHHHHHH
Confidence 55554444444
No 371
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.58 E-value=1.5e+02 Score=32.00 Aligned_cols=60 Identities=8% Similarity=-0.091 Sum_probs=31.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIR---GDLVLNNKVIEMYGKCGSMTDARRVFDHMA 339 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~---pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~ 339 (623)
.+.-+.+-|...|+++.|++.|.+.+.- +. --+..|-.+|..-.-.|+|.....+-.+.+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdY-CTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDY-CTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhh-hcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 4555666666666666666666664432 11 112334444545455566655555554443
No 372
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=64.57 E-value=2.9e+02 Score=32.46 Aligned_cols=48 Identities=8% Similarity=-0.039 Sum_probs=22.2
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHH
Q 044791 252 DLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKV 299 (623)
Q Consensus 252 li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l 299 (623)
++.--|+...++.++.+++-.-....+.+|..+.-+...+..-+|-..
T Consensus 897 v~~yi~~hdly~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~aa~a 944 (1243)
T COG5290 897 VMKYICRHDLYDFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKA 944 (1243)
T ss_pred HHHHHHhccchHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHHHHHH
Confidence 344445556666666666433233334444444444444443333333
No 373
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=64.24 E-value=2.4e+02 Score=33.42 Aligned_cols=15 Identities=20% Similarity=0.118 Sum_probs=11.1
Q ss_pred CCChHHHHHHHHHhc
Q 044791 206 NQGYPQARNSYQQVS 220 (623)
Q Consensus 206 ~g~~~~A~~lf~~m~ 220 (623)
+++|..|+...+.++
T Consensus 266 ~~d~nqAI~~vnkVK 280 (1163)
T COG5602 266 QVDFNQAIIFVNKVK 280 (1163)
T ss_pred ceehhHHHHHHHHHH
Confidence 577888888777773
No 374
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=64.02 E-value=12 Score=24.35 Aligned_cols=30 Identities=20% Similarity=0.182 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 044791 449 FWEALRNYARIHGDIDLEDHAEELMVDLDP 478 (623)
Q Consensus 449 ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~ 478 (623)
+|..+...|...|+.++|.+.++...++.+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344444555555555555555555555443
No 375
>PHA02875 ankyrin repeat protein; Provisional
Probab=62.88 E-value=2.2e+02 Score=30.55 Aligned_cols=175 Identities=8% Similarity=-0.081 Sum_probs=95.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHc
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADAS--CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLV---LNNKVIEMYGKC 325 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~--ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---~y~~Li~~y~k~ 325 (623)
+.+...++.|+.+-+.-+++.|..++.. ...+.+...+..|+.+.+..+++ .|...+.. .-.+.+...+..
T Consensus 37 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~ 112 (413)
T PHA02875 37 SPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD----LGKFADDVFYKDGMTPLHLATIL 112 (413)
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH----cCCcccccccCCCCCHHHHHHHh
Confidence 4566677889998887777887766543 12234555567788877655554 33221111 112345556677
Q ss_pred CCHHHHHHHHHHhhcCChH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHH
Q 044791 326 GSMTDARRVFDHMADRSMD---SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQT--FLAVFSACGSADAIEEAFIH 400 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~~~~---tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~t--y~~li~a~~~~g~~e~A~~l 400 (623)
|+.+-+..+++.-...+.. -.+ .+...+..|+.+-+.. +.+.|..++... -.+.+...+..|..+-+..+
T Consensus 113 ~~~~iv~~Ll~~gad~~~~~~~g~t-pLh~A~~~~~~~~v~~----Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~L 187 (413)
T PHA02875 113 KKLDIMKLLIARGADPDIPNTDKFS-PLHLAVMMGDIKGIEL----LIDHKACLDIEDCCGCTPLIIAMAKGDIAICKML 187 (413)
T ss_pred CCHHHHHHHHhCCCCCCCCCCCCCC-HHHHHHHcCCHHHHHH----HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 8887766666643332222 223 3344456777654433 345555443221 11233344556776544433
Q ss_pred HHHHHhhcCCCCCccc---hhhHHHHHHhcCCHHHHHHHHHh
Q 044791 401 FESMKSEFGISPGTEH---YLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 401 ~~~m~~~~g~~p~~~t---y~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
.+. |..++... ..+++...+..|+.+-+.-+++.
T Consensus 188 ----l~~-ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~ 224 (413)
T PHA02875 188 ----LDS-GANIDYFGKNGCVAALCYAIENNKIDIVRLFIKR 224 (413)
T ss_pred ----HhC-CCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHC
Confidence 333 66665433 23566656677888777766665
No 376
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=62.63 E-value=2.4e+02 Score=30.79 Aligned_cols=195 Identities=12% Similarity=-0.003 Sum_probs=110.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCC--CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 044791 251 ADLARLCQEGKVKEAIELMDKGV--KADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSM 328 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~--~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~ 328 (623)
..|.++...| ..|++.+...+ .++...+.....++....+...+..+.+.+ . .++..+-..++.++.+.+..
T Consensus 43 AhLdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L-~---d~~~~vr~aaa~ALg~i~~~ 116 (410)
T TIGR02270 43 AHVDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVL-Q---AGPEGLCAGIQAALGWLGGR 116 (410)
T ss_pred HHHHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHh-c---CCCHHHHHHHHHHHhcCCch
Confidence 4588888888 56777765444 244444554444544333333233333333 2 34666788889999988887
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 044791 329 TDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEF 408 (623)
Q Consensus 329 ~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~ 408 (623)
.-.-.+...+...+...-.+.+.++...+. .+...+...++ .+|...--..+.+++..+..+ +...+..+..
T Consensus 117 ~a~~~L~~~L~~~~p~vR~aal~al~~r~~--~~~~~L~~~L~---d~d~~Vra~A~raLG~l~~~~-a~~~L~~al~-- 188 (410)
T TIGR02270 117 QAEPWLEPLLAASEPPGRAIGLAALGAHRH--DPGPALEAALT---HEDALVRAAALRALGELPRRL-SESTLRLYLR-- 188 (410)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhcc--ChHHHHHHHhc---CCCHHHHHHHHHHHHhhcccc-chHHHHHHHc--
Confidence 777777766666666665566677766542 24444444443 456677777777777777653 3333334432
Q ss_pred CCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh
Q 044791 409 GISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDI 463 (623)
Q Consensus 409 g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~ 463 (623)
+ .|..+-..-+.++...|. ++|...... +...++....-.+...+...|..
T Consensus 189 d--~~~~VR~aA~~al~~lG~-~~A~~~l~~-~~~~~g~~~~~~l~~~lal~~~~ 239 (410)
T TIGR02270 189 D--SDPEVRFAALEAGLLAGS-RLAWGVCRR-FQVLEGGPHRQRLLVLLAVAGGP 239 (410)
T ss_pred C--CCHHHHHHHHHHHHHcCC-HhHHHHHHH-HHhccCccHHHHHHHHHHhCCch
Confidence 2 344444555667777777 556555554 22234444444444444444443
No 377
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=62.56 E-value=46 Score=27.71 Aligned_cols=66 Identities=11% Similarity=0.153 Sum_probs=40.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHH
Q 044791 296 AKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGL 363 (623)
Q Consensus 296 A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~ 363 (623)
+.++++.+.+.|+- +......+-.+-...|+.+.|.++++.+. ++.-.|..++.++...|.-+-|.
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 44566666666643 33333333333335577777777777777 77777777777777776655443
No 378
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=62.52 E-value=2.9e+02 Score=31.76 Aligned_cols=177 Identities=11% Similarity=0.085 Sum_probs=83.2
Q ss_pred HHHHHHHHHH-cCCCCC--HHHHHHHHHHHH-HcCCHHHHHHHHHHhhc----CChH-----HHHHHHHHHHHcCChHHH
Q 044791 296 AKKVHDYFLQ-STIRGD--LVLNNKVIEMYG-KCGSMTDARRVFDHMAD----RSMD-----SWHLMINGYADNGLGDEG 362 (623)
Q Consensus 296 A~~l~~~m~~-~g~~pd--~~~y~~Li~~y~-k~g~~~~A~~lf~~m~~----~~~~-----tyn~Li~~~~~~g~~eeA 362 (623)
|++.++-+.+ ..+.|. +.++--|...|. ...++++|+..+++... .+.. +...++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 4455544442 222222 344444555554 45667777777765421 1111 3334455555555544 7
Q ss_pred HHHHHHHHHc----CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhhcC--CCCCccchhhHHHHHH--hcCCHHHH
Q 044791 363 LQLFEQMRKL----GLQPNEQTFLAV-FSACGSADAIEEAFIHFESMKSEFG--ISPGTEHYLGLVGVLG--KCGHLFEA 433 (623)
Q Consensus 363 ~~l~~eM~~~----g~~Pd~~ty~~l-i~a~~~~g~~e~A~~l~~~m~~~~g--~~p~~~ty~~Li~~~~--k~g~~e~A 433 (623)
...+++..+. +..+-...|..+ +..+...++...|.+.++.+..... ..+-+.++..++.+.. +.+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 6666665532 111222233333 2222223677777777766664322 2233344444444443 23445555
Q ss_pred HHHHHhh------CC-----CCCCHHHHHHHHHHH--HHcCChhHHHHHHHHH
Q 044791 434 QQFIEQK------LP-----FEPTAEFWEALRNYA--RIHGDIDLEDHAEELM 473 (623)
Q Consensus 434 ~~lf~~~------m~-----~~Pd~~ty~~Li~a~--~~~g~~~~A~~~~~~~ 473 (623)
.+..+++ .. ..|-..+|..|++.+ ...|+++.+...++.+
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555541 10 123446677676644 3556655554444443
No 379
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=62.35 E-value=20 Score=29.21 Aligned_cols=46 Identities=9% Similarity=0.019 Sum_probs=23.2
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 044791 355 DNGLGDEGLQLFEQMRKLGLQPNE--QTFLAVFSACGSADAIEEAFIH 400 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~g~~Pd~--~ty~~li~a~~~~g~~e~A~~l 400 (623)
...+.++|+..|...+++-..+.. .++..|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544333221 3455555566666665555543
No 380
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.29 E-value=35 Score=33.55 Aligned_cols=58 Identities=7% Similarity=-0.023 Sum_probs=35.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHM 338 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m 338 (623)
.+..|+.+.+.+.+.+|+.+..+-++.. +-|...-..|+..||-.|++++|..-++-.
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~ 61 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLA 61 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHH
Confidence 3444556666666777777766666653 235555666777777777777776655533
No 381
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=61.42 E-value=82 Score=33.01 Aligned_cols=84 Identities=8% Similarity=0.108 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhc-------CChHHH--HHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHH-
Q 044791 316 NKVIEMYGKCGSMTDARRVFDHMAD-------RSMDSW--HLMINGYADNGLGDEGLQLFEQMRK-----LGLQPNEQT- 380 (623)
Q Consensus 316 ~~Li~~y~k~g~~~~A~~lf~~m~~-------~~~~ty--n~Li~~~~~~g~~eeA~~l~~eM~~-----~g~~Pd~~t- 380 (623)
..++...-+.++.++|++.++++.+ ++.+.| ..+..++...|+.+++.+++++.++ .|+.+++.+
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~ 158 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSS 158 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhh
Confidence 3444455556677777777776643 344433 3344556667777777777777766 566665543
Q ss_pred HHHHHHH-HHhcCCHHHHHH
Q 044791 381 FLAVFSA-CGSADAIEEAFI 399 (623)
Q Consensus 381 y~~li~a-~~~~g~~e~A~~ 399 (623)
|..+-.- |-+.|++..+.+
T Consensus 159 fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 159 FYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHHHHHHHHHHhHHHHHH
Confidence 3333332 344566655443
No 382
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.42 E-value=2.1e+02 Score=30.95 Aligned_cols=182 Identities=15% Similarity=0.126 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---------CCC
Q 044791 312 LVLNNKVIEMYGKCGSMTDARRVFDHMADR------SMDSWHLMINGYADNGLGDEGLQLFEQMRKLG---------LQP 376 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g---------~~P 376 (623)
...+.-|.+-|..+|+++.|++.|.+.+.- -+..|-.+|..-.-.|+|......-.+.+..- +.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 456788999999999999999999986541 22367778888888899988888877776531 222
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-----CCC-CccchhhHHHHHHhcCCHHHHHHHHHh-----hCCCCC
Q 044791 377 NEQTFLAVFSACGSADAIEEAFIHFESMKSEFG-----ISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQ-----KLPFEP 445 (623)
Q Consensus 377 d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g-----~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~-----~m~~~P 445 (623)
-..++..+... ..+++..|...|-....... +.| |+.+| ..+.+++--++-+--..+... .++..|
T Consensus 230 kl~C~agLa~L--~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iY-ggLcALAtfdr~~Lk~~vi~n~~Fk~flel~P 306 (466)
T KOG0686|consen 230 KLKCAAGLANL--LLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIY-GGLCALATFDRQDLKLNVIKNESFKLFLELEP 306 (466)
T ss_pred chHHHHHHHHH--HHHHHHHHHHHHHhCCCCccCccceecchhhHHH-HhhHhhccCCHHHHHHHHHcchhhhhHHhcCh
Confidence 23333333333 23477777777655543311 123 33333 234444444443333333322 122334
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCcc
Q 044791 446 TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRL 506 (623)
Q Consensus 446 d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~ 506 (623)
. .+..| ..|. .+++. .+++.+.++.++-...- ...|...+..++|..-+..
T Consensus 307 q--lr~il-~~fy-~sky~---~cl~~L~~~k~~llLD~---yLaphVd~Ly~~IR~r~ll 357 (466)
T KOG0686|consen 307 Q--LREIL-FKFY-SSKYA---SCLELLREIKPRLLLDM---YLAPHVDNLYSLIRNRALL 357 (466)
T ss_pred H--HHHHH-HHHh-hhhHH---HHHHHHHHhccceeech---hcchhHHHHHHHHHHhhHH
Confidence 3 33333 3333 34566 67777777766532210 1235555555555554433
No 383
>PF13934 ELYS: Nuclear pore complex assembly
Probab=61.28 E-value=1.1e+02 Score=30.41 Aligned_cols=107 Identities=18% Similarity=0.095 Sum_probs=55.5
Q ss_pred HHHHHHHHHHH--cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHH
Q 044791 345 SWHLMINGYAD--NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVG 422 (623)
Q Consensus 345 tyn~Li~~~~~--~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~ 422 (623)
.|..+|.|+.. .+++++|++++-+- .+.|+-. .-++.++...|+.+.|+.++..+.- .-.+...-..++.
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHH
Confidence 45566666433 45566666666221 1222211 1366667777888888877765431 1111122222233
Q ss_pred HHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 044791 423 VLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHG 461 (623)
Q Consensus 423 ~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g 461 (623)
+ ..+|.+.||..+-+. ..-.-....+..++..+....
T Consensus 150 ~-La~~~v~EAf~~~R~-~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRS-YPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred H-HHcCCHHHHHHHHHh-CchhhhHHHHHHHHHHHHHHh
Confidence 3 556788888877776 321111246666666665433
No 384
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=61.21 E-value=1.7e+02 Score=32.18 Aligned_cols=84 Identities=12% Similarity=-0.039 Sum_probs=45.4
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCChhHH
Q 044791 389 GSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP--FEPTAEFWEALRNYARIHGDIDLE 466 (623)
Q Consensus 389 ~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~--~~Pd~~ty~~Li~a~~~~g~~~~A 466 (623)
...|++..|-+-+....+++.-.|+....-+ ..+...|++|.|...+.. .+ +.-...+-.++++...+.|++++|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~-~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISD-VEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhc-hhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 3456666665444444433344444332222 234556777777777665 22 223445666677777777777766
Q ss_pred HHHHHHHHh
Q 044791 467 DHAEELMVD 475 (623)
Q Consensus 467 ~~~~~~~~~ 475 (623)
....+.|..
T Consensus 377 ~s~a~~~l~ 385 (831)
T PRK15180 377 LSTAEMMLS 385 (831)
T ss_pred HHHHHHHhc
Confidence 555555543
No 385
>PRK09687 putative lyase; Provisional
Probab=61.12 E-value=2e+02 Score=29.48 Aligned_cols=214 Identities=10% Similarity=-0.027 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKW----YENAKKVHDYFLQSTIRGDLVLNNKVIEMYG 323 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~----~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~ 323 (623)
+-...+.++...|..+....+.+---..|...=...+.+++..|+ .+++..++..+... .+|..+-...+.+++
T Consensus 39 vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG 116 (280)
T PRK09687 39 KRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATG 116 (280)
T ss_pred HHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHh
Confidence 444566667766653332222222223456665666777777775 35677777766442 456666666777776
Q ss_pred HcCC-----HHHHHHHHHH-hhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHH
Q 044791 324 KCGS-----MTDARRVFDH-MADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD-AIEE 396 (623)
Q Consensus 324 k~g~-----~~~A~~lf~~-m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g-~~e~ 396 (623)
..+. ..++...+.. +...+..+--..+.++.+.|+ ++|+..+-.+.+. +|...-...+.++++.+ .-..
T Consensus 117 ~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~ 192 (280)
T PRK09687 117 HRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPD 192 (280)
T ss_pred cccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHH
Confidence 6542 2334444433 334566666677788888876 6788888888763 45556666667777653 2446
Q ss_pred HHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 397 AFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 397 A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
+...+..+.. .++..+-..-+.++++.|+. +|+..+-+.++ .++ .....+.++...|+. .|..++..+.+.
T Consensus 193 ~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~-~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~ 263 (280)
T PRK09687 193 IREAFVAMLQ----DKNEEIRIEAIIGLALRKDK-RVLSVLIKELK-KGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK 263 (280)
T ss_pred HHHHHHHHhc----CCChHHHHHHHHHHHccCCh-hHHHHHHHHHc-CCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh
Confidence 6666666663 34666677788999999985 45555555365 334 234677888888886 355566555543
No 386
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=61.12 E-value=2.2e+02 Score=29.90 Aligned_cols=46 Identities=7% Similarity=0.147 Sum_probs=22.3
Q ss_pred HcCCHHHHHHHHHHhhcC-ChH----HHHHHHHHHHHcCChHHHHHHHHHH
Q 044791 324 KCGSMTDARRVFDHMADR-SMD----SWHLMINGYADNGLGDEGLQLFEQM 369 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~~-~~~----tyn~Li~~~~~~g~~eeA~~l~~eM 369 (623)
|.|+..+|.++|+.+.+. ... ....||.+|....-+.++-.++.+-
T Consensus 287 klGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakY 337 (556)
T KOG3807|consen 287 KLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKY 337 (556)
T ss_pred HhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456666666666554321 111 2344555555555454444444443
No 387
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.10 E-value=1.3e+02 Score=36.15 Aligned_cols=40 Identities=13% Similarity=0.106 Sum_probs=23.8
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 044791 300 HDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMA 339 (623)
Q Consensus 300 ~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~ 339 (623)
|+++.+.-+.|...-+-.-|..+.+.+++++|+.+...|.
T Consensus 985 ~~~L~~~~LSp~~~~~L~~la~~i~~~~y~~a~~i~~~ia 1024 (1049)
T KOG0307|consen 985 FDKLRDGTLSPPITDGLHQLAQSIKNRDYSEALQIHAQIA 1024 (1049)
T ss_pred HHHHhcCCcChHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 4444443355555555555556666677777777766665
No 388
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=60.75 E-value=14 Score=22.88 Aligned_cols=20 Identities=15% Similarity=0.193 Sum_probs=10.0
Q ss_pred HHHHHHHHcCCHHHHHHHHH
Q 044791 317 KVIEMYGKCGSMTDARRVFD 336 (623)
Q Consensus 317 ~Li~~y~k~g~~~~A~~lf~ 336 (623)
.|..++...|++++|+.+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555443
No 389
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=60.72 E-value=42 Score=38.59 Aligned_cols=124 Identities=15% Similarity=0.199 Sum_probs=81.5
Q ss_pred HHHHHHHHhhcC----ChH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----------HHHHHHHHHHhcC
Q 044791 330 DARRVFDHMADR----SMD---SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQ----------TFLAVFSACGSAD 392 (623)
Q Consensus 330 ~A~~lf~~m~~~----~~~---tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~----------ty~~li~a~~~~g 392 (623)
+--..+++|..+ ++. +-..|+-.|....+|+..+++.+.++.. ||.. .|.-.++---+-|
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCc
Confidence 334556677642 332 6667777888889999999999999874 4332 2333344444668
Q ss_pred CHHHHHHHHHHHHhhcC-CCCCccchhhHH-------HHHHhcCCHHHHHHHHHhhCCCCCCHH---HHHHHHHH
Q 044791 393 AIEEAFIHFESMKSEFG-ISPGTEHYLGLV-------GVLGKCGHLFEAQQFIEQKLPFEPTAE---FWEALRNY 456 (623)
Q Consensus 393 ~~e~A~~l~~~m~~~~g-~~p~~~ty~~Li-------~~~~k~g~~e~A~~lf~~~m~~~Pd~~---ty~~Li~a 456 (623)
+-++|+.+.-.|.++.| +.||......-| ..|..++..+.|.+.|+++++++|... -+.+|+.+
T Consensus 258 DRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRA 332 (1226)
T ss_pred cHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHH
Confidence 99999988877776533 667764332211 234456778899999999899888764 34444443
No 390
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=60.44 E-value=5.4e+02 Score=34.23 Aligned_cols=145 Identities=7% Similarity=0.005 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHcC-CCC-----CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044791 251 ADLARLCQEGKVKEAIELMDKG-VKA-----DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~-~~p-----d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k 324 (623)
+|-.+-.+.+.+.+|+-.+++. ... ...-|-.+...|+..++.|+...+...-.. .|+ ....|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 3444556788899999888762 111 123455666699999999998888764211 222 2235667788
Q ss_pred cCCHHHHHHHHHHhhcCCh---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHhcCCHHHHHHH
Q 044791 325 CGSMTDARRVFDHMADRSM---DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAV-FSACGSADAIEEAFIH 400 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~~~~---~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~l-i~a~~~~g~~e~A~~l 400 (623)
.|++..|...|+.+...+. .+|+-++......|.++.++-..+-.... .......++++ +.+-.+.+++|..+..
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 8999999999999986543 37888888878888888887755554432 22223333333 3444677787777766
Q ss_pred HH
Q 044791 401 FE 402 (623)
Q Consensus 401 ~~ 402 (623)
+.
T Consensus 1541 l~ 1542 (2382)
T KOG0890|consen 1541 LS 1542 (2382)
T ss_pred hh
Confidence 54
No 391
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=60.33 E-value=71 Score=32.62 Aligned_cols=89 Identities=11% Similarity=0.032 Sum_probs=48.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHh---
Q 044791 350 INGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGK--- 426 (623)
Q Consensus 350 i~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k--- 426 (623)
|.+++..+++.+++...-.--+.--+.-....-.-|--|.+.+....+.++-...... .-.-+...|.++++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~-p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQD-PSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC-cccCCchhhHHHHHHHHHHHH
Confidence 5566666666666553322221111112233334455567777777777776666643 112233346666665544
Q ss_pred --cCCHHHHHHHHHh
Q 044791 427 --CGHLFEAQQFIEQ 439 (623)
Q Consensus 427 --~g~~e~A~~lf~~ 439 (623)
.|.++||+++...
T Consensus 169 lPLG~~~eAeelv~g 183 (309)
T PF07163_consen 169 LPLGHFSEAEELVVG 183 (309)
T ss_pred hccccHHHHHHHHhc
Confidence 5888888888755
No 392
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=60.07 E-value=2.1e+02 Score=29.46 Aligned_cols=97 Identities=14% Similarity=0.137 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH----HcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc-cchh
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMR----KLGLQPNEQTFL-AVFSACGSADAIEEAFIHFESMKSEFGISPGT-EHYL 418 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~----~~g~~Pd~~ty~-~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~-~ty~ 418 (623)
.|..+..-|+.-++.+.+.+...+.. ..|.+.|+...- -|.-.|+...-+++-++..+.|.++ |.+-+. .-|-
T Consensus 117 a~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk-GgDWeRrNRyK 195 (412)
T COG5187 117 ADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK-GGDWERRNRYK 195 (412)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCCHHhhhhHH
Confidence 67778888888888888777666544 346666654322 2233345555577788888888876 544321 1122
Q ss_pred hHHHHHH-hcCCHHHHHHHHHhhCC
Q 044791 419 GLVGVLG-KCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 419 ~Li~~~~-k~g~~e~A~~lf~~~m~ 442 (623)
+--..|+ ...++.+|-.+|-+.|.
T Consensus 196 ~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 196 VYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 2222222 24577888888777454
No 393
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=59.83 E-value=88 Score=32.19 Aligned_cols=71 Identities=20% Similarity=0.261 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hcCCCCCccc
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS----EFGISPGTEH 416 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~----~~g~~p~~~t 416 (623)
+.+.....|..+|.+.+|..+-++..... ..+...+-.|+..++..|+--.|...+++|.+ ..|+..+...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 44555666778888888888877776542 23556666777778888887667666665543 3455554433
No 394
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=59.79 E-value=10 Score=22.88 Aligned_cols=19 Identities=26% Similarity=0.223 Sum_probs=7.6
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 044791 421 VGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 421 i~~~~k~g~~e~A~~lf~~ 439 (623)
...|...|++++|...|+.
T Consensus 8 a~~~~~~~~~~~a~~~~~~ 26 (34)
T smart00028 8 GNAYLKLGDYDEALEYYEK 26 (34)
T ss_pred HHHHHHHhhHHHHHHHHHH
Confidence 3333334444444444433
No 395
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=59.62 E-value=58 Score=31.63 Aligned_cols=76 Identities=16% Similarity=0.198 Sum_probs=54.4
Q ss_pred HHHHcCCHHHHHHHHHHhhcC----ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCC
Q 044791 321 MYGKCGSMTDARRVFDHMADR----SMDSWHLMINGYADNGLGDEGLQLFEQMRKL---GLQPNEQTFLAVFSACGSADA 393 (623)
Q Consensus 321 ~y~k~g~~~~A~~lf~~m~~~----~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~---g~~Pd~~ty~~li~a~~~~g~ 393 (623)
-+.+.|+ ++|++.|-.+... ++.....|...| -..+.++|+.++.+.++. +-.+|...+.+|++.+.+.|+
T Consensus 116 ~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 116 HWSRFGD-QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred HhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 4455555 6788888888653 333444444444 467889999999888753 336788899999999999999
Q ss_pred HHHHH
Q 044791 394 IEEAF 398 (623)
Q Consensus 394 ~e~A~ 398 (623)
++.|.
T Consensus 194 ~e~AY 198 (203)
T PF11207_consen 194 YEQAY 198 (203)
T ss_pred hhhhh
Confidence 99885
No 396
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.16 E-value=3.1e+02 Score=31.03 Aligned_cols=144 Identities=10% Similarity=0.107 Sum_probs=88.0
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC-----------C
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG-----------V 273 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~-----------~ 273 (623)
.+..|++|...|...... ..|+.... .....+.-+.+...|-..+...|+.+.|-++.++| +
T Consensus 250 hs~sYeqaq~~F~~av~~-~d~n~v~~------lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F 322 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIV-HDPNNVLI------LLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNF 322 (665)
T ss_pred cchHHHHHHHHHHHHHhh-cCCcceee------eeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccc
Confidence 667888998888854221 11221111 11233445566667777888899988888776431 1
Q ss_pred C------------CCH-HHHHH---HHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHH
Q 044791 274 K------------ADA-SCFYT---LFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYG-KCGSMTDARRVFD 336 (623)
Q Consensus 274 ~------------pd~-~ty~~---Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~-k~g~~~~A~~lf~ 336 (623)
. |.. .-|-+ -|..+.+.|.+..|+++.+.+.+....-|....-.+|+.|+ ++.++.--+++++
T Consensus 323 ~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~ 402 (665)
T KOG2422|consen 323 IPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSN 402 (665)
T ss_pred ccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHH
Confidence 1 111 22222 24466788999999999988888655446777777888876 5677777777777
Q ss_pred HhhcCCh------HHHHHHHHHHHH
Q 044791 337 HMADRSM------DSWHLMINGYAD 355 (623)
Q Consensus 337 ~m~~~~~------~tyn~Li~~~~~ 355 (623)
+.+..+- ..|...|.-+.-
T Consensus 403 ~~e~~n~l~~~PN~~yS~AlA~f~l 427 (665)
T KOG2422|consen 403 EPENMNKLSQLPNFGYSLALARFFL 427 (665)
T ss_pred HHHhhccHhhcCCchHHHHHHHHHH
Confidence 7654321 256555544333
No 397
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.96 E-value=1.9e+02 Score=31.44 Aligned_cols=43 Identities=19% Similarity=0.094 Sum_probs=25.9
Q ss_pred HHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044791 346 WHLMINGYAD---NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSAC 388 (623)
Q Consensus 346 yn~Li~~~~~---~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~ 388 (623)
+..++.++.+ .++.+.|+..+.+|.+.|..|..+.--.++.++
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3444444444 467777777777777777766655444444443
No 398
>PHA02878 ankyrin repeat protein; Provisional
Probab=58.92 E-value=2.6e+02 Score=30.77 Aligned_cols=79 Identities=8% Similarity=0.033 Sum_probs=45.6
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 044791 253 LARLCQEGKVKEAIELMDKGVKADAS---CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMT 329 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~~~pd~~---ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~ 329 (623)
+...++.|+.+-+..+++.|..++.. .++.| ...+..|+.+.+..+++....... ...+.. +...+..|+.+
T Consensus 41 Lh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpL-h~A~~~g~~~~v~~Ll~~~~~~~~---~~~~~~-l~~a~~~~~~e 115 (477)
T PHA02878 41 LHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPL-HIICKEPNKLGMKEMIRSINKCSV---FYTLVA-IKDAFNNRNVE 115 (477)
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHH-HHHHHCccHhHHHHHHHHHhcccc---ccchhh-HHHHHHcCCHH
Confidence 55567889999998888888766542 23333 344566777766666655433222 122222 33445556666
Q ss_pred HHHHHHH
Q 044791 330 DARRVFD 336 (623)
Q Consensus 330 ~A~~lf~ 336 (623)
-+..++.
T Consensus 116 i~~~Ll~ 122 (477)
T PHA02878 116 IFKIILT 122 (477)
T ss_pred HHHHHHh
Confidence 6655554
No 399
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=58.73 E-value=82 Score=32.82 Aligned_cols=11 Identities=45% Similarity=0.525 Sum_probs=5.9
Q ss_pred HcCCHHHHHHH
Q 044791 258 QEGKVKEAIEL 268 (623)
Q Consensus 258 ~~g~~~~A~~l 268 (623)
..|++..|++.
T Consensus 385 SaGDy~~AiET 395 (498)
T KOG4849|consen 385 SAGDYKGAIET 395 (498)
T ss_pred ccccchhHHHH
Confidence 35566555553
No 400
>PRK11619 lytic murein transglycosylase; Provisional
Probab=58.12 E-value=3.5e+02 Score=31.37 Aligned_cols=57 Identities=11% Similarity=0.049 Sum_probs=33.9
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 418 LGLVGVLGKCGHLFEAQQFIEQKLP--FEPTAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 418 ~~Li~~~~k~g~~e~A~~lf~~~m~--~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
..-+..-.+.++++.+...+.. |. ..-...-.--+.+++...|+.++|...++.+..
T Consensus 316 e~r~r~Al~~~dw~~~~~~i~~-L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 316 ERRVRMALGTGDRRGLNTWLAR-LPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHHccCHHHHHHHHHh-cCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 3334444567777777777777 54 111223333455666667888877777777643
No 401
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=57.85 E-value=43 Score=29.02 Aligned_cols=27 Identities=19% Similarity=0.525 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~ 371 (623)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 467777777777777777777777665
No 402
>KOG3598 consensus Thyroid hormone receptor-associated protein complex, subunit TRAP230 [Transcription]
Probab=56.41 E-value=1.4 Score=52.92 Aligned_cols=7 Identities=29% Similarity=0.107 Sum_probs=2.7
Q ss_pred Ccccccc
Q 044791 35 QNNIIGK 41 (623)
Q Consensus 35 ~~~~~~~ 41 (623)
+-|-||.
T Consensus 2068 ~m~py~~ 2074 (2220)
T KOG3598|consen 2068 LMNPYGG 2074 (2220)
T ss_pred hcccccC
Confidence 3334443
No 403
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=55.90 E-value=2e+02 Score=27.83 Aligned_cols=58 Identities=12% Similarity=0.189 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhc------CChHHHHHHHH-HHHHcCC--hHHHHHHHHHHHHc
Q 044791 315 NNKVIEMYGKCGSMTDARRVFDHMAD------RSMDSWHLMIN-GYADNGL--GDEGLQLFEQMRKL 372 (623)
Q Consensus 315 y~~Li~~y~k~g~~~~A~~lf~~m~~------~~~~tyn~Li~-~~~~~g~--~eeA~~l~~eM~~~ 372 (623)
++..+-.....|++++|..-++++.+ +-...|..+.. +++..+. +-||..++.-....
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 44444455566778888877776643 23335666665 5665543 55666666555443
No 404
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.80 E-value=1.1e+02 Score=31.82 Aligned_cols=94 Identities=12% Similarity=0.057 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKL---GLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLV 421 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~---g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li 421 (623)
+-..++..-....+++.|+.++-+++.. -..++. |-.++++-|. .-+.++++.++..=+ .+|+-||-.+++.||
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npI-qYGiF~dqf~~c~l~ 142 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPI-QYGIFPDQFTFCLLM 142 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcc-hhccccchhhHHHHH
Confidence 4555555555567788888888777642 122222 2223343333 346678888877766 569999999999999
Q ss_pred HHHHhcCCHHHHHHHHHhhC
Q 044791 422 GVLGKCGHLFEAQQFIEQKL 441 (623)
Q Consensus 422 ~~~~k~g~~e~A~~lf~~~m 441 (623)
+.+.+.+++.+|..+.-.+|
T Consensus 143 D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 143 DSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred HHHHhcccHHHHHHHHHHHH
Confidence 99999999999988877733
No 405
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=55.34 E-value=2.2e+02 Score=33.08 Aligned_cols=217 Identities=12% Similarity=0.025 Sum_probs=111.1
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHhhc---C-ChHH--HHHHHHHHHHcCCh
Q 044791 287 CGNPKWYENAKKVHDYFLQSTIRGDLVLNN-KVIEMYGKCGSMTDARRVFDHMAD---R-SMDS--WHLMINGYADNGLG 359 (623)
Q Consensus 287 ~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~-~Li~~y~k~g~~~~A~~lf~~m~~---~-~~~t--yn~Li~~~~~~g~~ 359 (623)
+..+|..+++.+++...++..-. +..-|. .|.-+++..|.. -+++|+.+++ . +.++ -..+.-|++..|-.
T Consensus 405 LIhA~hG~~~~~yL~~~Lk~~~~-e~v~hG~cLGlGLa~mGSa--~~eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~ 481 (929)
T KOG2062|consen 405 LIHANHGRGITDYLLQQLKTAEN-EVVRHGACLGLGLAGMGSA--NEEIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTA 481 (929)
T ss_pred ccccCcCccHHHHHHHHHHhccc-hhhhhhhhhhccchhcccc--cHHHHHHHHHHHhccchhhhhHHHHhhhhHhhCcC
Confidence 34444455566776666554322 333333 344444444432 3355555543 2 2221 12222334444432
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCcc--chhhHHHHHHhcCCHHHHH
Q 044791 360 DEGLQLFEQMRKLGLQP-NEQTF--LAVFSACGSADAIEEAFIHFESMKSEFGISPGTE--HYLGLVGVLGKCGHLFEAQ 434 (623)
Q Consensus 360 eeA~~l~~eM~~~g~~P-d~~ty--~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~--ty~~Li~~~~k~g~~e~A~ 434 (623)
. .+.+++|+.--.+- -..+. ..+.-+|.--|+.++|..+.++|... .+|-.. -.-++.-+|+..|+.....
T Consensus 482 ~--~eaiedm~~Ya~ETQHeki~RGl~vGiaL~~ygrqe~Ad~lI~el~~d--kdpilR~~Gm~t~alAy~GTgnnkair 557 (929)
T KOG2062|consen 482 N--QEAIEDMLTYAQETQHEKIIRGLAVGIALVVYGRQEDADPLIKELLRD--KDPILRYGGMYTLALAYVGTGNNKAIR 557 (929)
T ss_pred c--HHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhhhhhhHHHHHHHhcC--CchhhhhhhHHHHHHHHhccCchhhHH
Confidence 2 23344554321110 00111 12233455668888999999999854 233221 1224566788888887777
Q ss_pred HHHHhhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCc
Q 044791 435 QFIEQKLP-FEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPT 513 (623)
Q Consensus 435 ~lf~~~m~-~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~ 513 (623)
+++.-++. ..-|+.-+..+.-++.-..+.+.....++.+.+-..-++ ...+..+|=-+|+..|.
T Consensus 558 ~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HV----------RyGaA~ALGIaCAGtG~----- 622 (929)
T KOG2062|consen 558 RLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHV----------RYGAAMALGIACAGTGL----- 622 (929)
T ss_pred HhhcccccccchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhh----------hhhHHHHHhhhhcCCCc-----
Confidence 77766443 333555555555577777888877777777766332222 12222333334666665
Q ss_pred ccchHHHHHHHHHHHH
Q 044791 514 LYRDDEKLKALNQMKE 529 (623)
Q Consensus 514 ~~~~~eal~~~~~M~~ 529 (623)
.+|+.+++-|..
T Consensus 623 ----~eAi~lLepl~~ 634 (929)
T KOG2062|consen 623 ----KEAINLLEPLTS 634 (929)
T ss_pred ----HHHHHHHhhhhc
Confidence 488888877754
No 406
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=55.28 E-value=21 Score=36.77 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFL 382 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~ 382 (623)
-||..|..-++.||+++|+.|++|.++.|+.--..||.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 35667777777777777777777777777654444443
No 407
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=55.24 E-value=36 Score=32.44 Aligned_cols=26 Identities=12% Similarity=0.310 Sum_probs=10.1
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHH
Q 044791 431 FEAQQFIEQKLPFEPTAEFWEALRNY 456 (623)
Q Consensus 431 e~A~~lf~~~m~~~Pd~~ty~~Li~a 456 (623)
++|.++|+++...+|+..+|+.-+..
T Consensus 97 ~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 97 EKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 33444444433334444444444443
No 408
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=54.67 E-value=86 Score=26.97 Aligned_cols=49 Identities=14% Similarity=0.131 Sum_probs=31.4
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 352 GYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 352 ~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
.+.+.|+|++|..+.+.+ ..||...|..|-. .+.|..+++..-+.+|..
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 366777888887777665 4677777755533 356666666666656654
No 409
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=54.58 E-value=20 Score=22.76 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=10.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 044791 350 INGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 350 i~~~~~~g~~eeA~~l~~eM~~ 371 (623)
..++.+.|++++|.+.|+++++
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHH
Confidence 3444445555555555555443
No 410
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=54.49 E-value=24 Score=28.77 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=24.9
Q ss_pred HcCCHHHHHHHHHHhhcCCh------HHHHHHHHHHHHcCChHHHHHH
Q 044791 324 KCGSMTDARRVFDHMADRSM------DSWHLMINGYADNGLGDEGLQL 365 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~~~~------~tyn~Li~~~~~~g~~eeA~~l 365 (623)
...+-++|+..+....++.. .+...|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666665544211 1566667777777776666653
No 411
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=54.46 E-value=2.8e+02 Score=33.80 Aligned_cols=123 Identities=15% Similarity=0.182 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHc-CCC------CCHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDK-GVK------ADASCFYTLFELCGN-PKWYENAKKVHDYFLQSTIRGDLVLNNKVI 319 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~-~~~------pd~~ty~~Ll~~~~~-~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li 319 (623)
.....|..+...+++.+|+.+.++ .+. -|...|-.=+..+.+ .++.+---.++..+....+. ...|....
T Consensus 696 LVL~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt--~tmY~~~~ 773 (928)
T PF04762_consen 696 LVLAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVT--KTMYKDTY 773 (928)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccccccc--cccccccc
Confidence 344667888899999999999975 222 234444444444443 34544444444444443222 11222111
Q ss_pred ------------HHHHHcCCHHHHHHHHH-Hhh-cCChH-HHHHHHHHHHHcC--ChHHHHHHHHHHHHc
Q 044791 320 ------------EMYGKCGSMTDARRVFD-HMA-DRSMD-SWHLMINGYADNG--LGDEGLQLFEQMRKL 372 (623)
Q Consensus 320 ------------~~y~k~g~~~~A~~lf~-~m~-~~~~~-tyn~Li~~~~~~g--~~eeA~~l~~eM~~~ 372 (623)
..+...++++.....+. .|. ..+.. -...+|.+|++.+ ++++|+.+..++++.
T Consensus 774 ~~~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~ 843 (928)
T PF04762_consen 774 PPSSEAQPNSNSSTASSESKVNKICDAIRKALEKPKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE 843 (928)
T ss_pred ccccccccccccCCCccccHHHHHHHHHHHHhcccccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc
Confidence 12223344554444443 333 33333 5677888899998 899999999998876
No 412
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=53.66 E-value=1.5e+02 Score=31.53 Aligned_cols=36 Identities=3% Similarity=0.012 Sum_probs=23.8
Q ss_pred CHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCCC
Q 044791 276 DASCFYTLFELCGNPK-WYENAKKVHDYFLQSTIRGD 311 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g-~~~~A~~l~~~m~~~g~~pd 311 (623)
+.+-|+.||+-.+.-| .-|.+..+..+|.+.|-..|
T Consensus 317 ~~~p~ddvidKv~~MGf~rDqV~a~v~rl~E~GQ~vD 353 (358)
T PF07223_consen 317 NRHPYDDVIDKVASMGFRRDQVRATVRRLTENGQPVD 353 (358)
T ss_pred ccCcHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCccc
Confidence 3445777777666665 44667777888888776555
No 413
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.43 E-value=27 Score=40.80 Aligned_cols=96 Identities=21% Similarity=0.279 Sum_probs=68.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHH
Q 044791 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQ 435 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~ 435 (623)
+.++++.+.+.+...--| -++|..+-+.|-.|-|+.+.+.=..++ +....+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 446777776655433222 256677778888888887775544332 22456899999998
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 436 FIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 436 lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
.-.+ +. |..+|..|.......|+.+.|+.+++..+..
T Consensus 665 ~akk-ld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~knf 701 (1202)
T KOG0292|consen 665 AAKK-LD---DKDVWERLGEEALRQGNHQIAEMCYQRTKNF 701 (1202)
T ss_pred HHHh-cC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 8887 44 6788999999989999999888888887664
No 414
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=53.27 E-value=1.4e+02 Score=26.65 Aligned_cols=72 Identities=11% Similarity=0.237 Sum_probs=46.4
Q ss_pred HHHHHHHH--cCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044791 263 KEAIELMD--KGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRG-DLVLNNKVIEMYGKCGSMTDARRVFDH 337 (623)
Q Consensus 263 ~~A~~l~~--~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~y~~Li~~y~k~g~~~~A~~lf~~ 337 (623)
+++++.|. ...+-|.......|.. ++. .+.+.++|..|...|+-- -+.-|......+.+.|++++|.+||..
T Consensus 50 er~~~~f~~~~~Y~nD~RylkiWi~y-a~~--~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 50 ERCIRKFKDDERYKNDERYLKIWIKY-ADL--SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHTTSGGGTT-HHHHHHHHHH-HTT--BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhhhHhhcCCHHHHHHHHHH-HHH--ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34444442 2455565544444433 222 228999999998877654 367788888889999999999999875
No 415
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=53.17 E-value=2.1e+02 Score=28.72 Aligned_cols=118 Identities=10% Similarity=-0.008 Sum_probs=72.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHhhc--CChH-HHHHHHHHHHHcCChHH
Q 044791 286 LCGNPKWYENAKKVHDYFLQSTIRGDL-VLNNKVIEMYGKCGSMTDARRVFDHMAD--RSMD-SWHLMINGYADNGLGDE 361 (623)
Q Consensus 286 ~~~~~g~~~~A~~l~~~m~~~g~~pd~-~~y~~Li~~y~k~g~~~~A~~lf~~m~~--~~~~-tyn~Li~~~~~~g~~ee 361 (623)
.|....+++.|+..|.+.+. +.|+. .-|..-+-++.+..+++.+..=-....+ ++.+ ...-|..++.....+++
T Consensus 19 k~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 44455667777776655555 55665 4455666777777777777665555543 3333 34445556667777888
Q ss_pred HHHHHHHHHH----cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 362 GLQLFEQMRK----LGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 362 A~~l~~eM~~----~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
|+..+.+... ..+.+-.-....|..+--..-.+.++.++.++..
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~E 144 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQELE 144 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHhh
Confidence 8888887743 3344445566666666555566666666665544
No 416
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=53.02 E-value=1.5e+02 Score=31.94 Aligned_cols=55 Identities=11% Similarity=0.070 Sum_probs=35.9
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHH--HhcCCHHHHHHHHHHHHhh
Q 044791 352 GYADNGLGDEGLQLFEQMRKLGLQPNEQ--TFLAVFSAC--GSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 352 ~~~~~g~~eeA~~l~~eM~~~g~~Pd~~--ty~~li~a~--~~~g~~e~A~~l~~~m~~~ 407 (623)
.+.+.++|..|.++|+++... +.++.. .|..+..+| ...-++++|.+.++.....
T Consensus 140 ~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 140 ELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 445777888888888888876 554443 344444443 3466788888888776643
No 417
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=52.91 E-value=78 Score=27.26 Aligned_cols=44 Identities=5% Similarity=0.122 Sum_probs=23.8
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 044791 296 AKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMA 339 (623)
Q Consensus 296 A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~ 339 (623)
..+-+..+....+.|+..+..+.+.+|.|.+++.-|+++|+.++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444556666666666666666666666666666554
No 418
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=52.88 E-value=48 Score=28.21 Aligned_cols=45 Identities=4% Similarity=0.123 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 044791 295 NAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMA 339 (623)
Q Consensus 295 ~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~ 339 (623)
++.+-+..+....+.|+..+..+.+.+|-|.+++.-|+++|+.++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444555555555566666666666666666666666666666554
No 419
>PHA03247 large tegument protein UL36; Provisional
Probab=52.64 E-value=1.8e+02 Score=38.79 Aligned_cols=8 Identities=38% Similarity=0.779 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 044791 280 FYTLFELC 287 (623)
Q Consensus 280 y~~Ll~~~ 287 (623)
...||.+|
T Consensus 3111 lAlLi~AC 3118 (3151)
T PHA03247 3111 LAVLIEAC 3118 (3151)
T ss_pred HHHHHHHH
Confidence 33344444
No 420
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=52.33 E-value=24 Score=25.29 Aligned_cols=24 Identities=17% Similarity=0.270 Sum_probs=14.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 044791 349 MINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 349 Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
|..+|...|+.+.|.+++++..+.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 455666666666666666666643
No 421
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=52.20 E-value=40 Score=38.27 Aligned_cols=9 Identities=56% Similarity=0.892 Sum_probs=4.9
Q ss_pred CHHHHHHHH
Q 044791 261 KVKEAIELM 269 (623)
Q Consensus 261 ~~~~A~~l~ 269 (623)
++++|+++|
T Consensus 553 ~~~~~~~~~ 561 (562)
T TIGR01628 553 KVDEALEVL 561 (562)
T ss_pred HHHHHHHHh
Confidence 455565554
No 422
>PHA03100 ankyrin repeat protein; Provisional
Probab=51.26 E-value=1.5e+02 Score=32.56 Aligned_cols=177 Identities=11% Similarity=0.088 Sum_probs=88.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHHH--HHHHHHH-----HhCCCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHH
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADASC--FYTLFEL-----CGNPKWYENAKKVHDYFLQSTIRGDL---VLNNKVIE 320 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~t--y~~Ll~~-----~~~~g~~~~A~~l~~~m~~~g~~pd~---~~y~~Li~ 320 (623)
+.+...++.|+.+-+..+++.|..++... ..+.+.. .+..|+. ++.+.+++.|..++. ...+.|..
T Consensus 37 t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~----~iv~~Ll~~ga~i~~~d~~g~tpL~~ 112 (480)
T PHA03100 37 LPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVK----EIVKLLLEYGANVNAPDNNGITPLLY 112 (480)
T ss_pred hhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchH----HHHHHHHHCCCCCCCCCCCCCchhhH
Confidence 45666778888888888888887765432 1223333 3444443 344445556654432 22233333
Q ss_pred HHH-HcCCHHHHHHHHHHhhcCCh---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCH
Q 044791 321 MYG-KCGSMTDARRVFDHMADRSM---DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTF--LAVFSACGSADAI 394 (623)
Q Consensus 321 ~y~-k~g~~~~A~~lf~~m~~~~~---~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty--~~li~a~~~~g~~ 394 (623)
+.. +.|+.+-+..+++.-...+. ..++ .+...+..|. .-.++++.+.+.|..++.... .+.+...+..|+.
T Consensus 113 A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~ 189 (480)
T PHA03100 113 AISKKSNSYSIVEYLLDNGANVNIKNSDGEN-LLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNI 189 (480)
T ss_pred HHhcccChHHHHHHHHHcCCCCCccCCCCCc-HHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCH
Confidence 332 66777766666654322221 1233 3444455552 123345555666766544322 2345555666766
Q ss_pred HHHHHHHHHHHhhcCCCCCccch--------hhHHHHHHhcCC--HHHHHHHHHh
Q 044791 395 EEAFIHFESMKSEFGISPGTEHY--------LGLVGVLGKCGH--LFEAQQFIEQ 439 (623)
Q Consensus 395 e~A~~l~~~m~~~~g~~p~~~ty--------~~Li~~~~k~g~--~e~A~~lf~~ 439 (623)
+-+..+++ . |..++.... .+.+...+..|. .+-+.-+++.
T Consensus 190 ~iv~~Ll~----~-ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~ 239 (480)
T PHA03100 190 DVIKFLLD----N-GADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSY 239 (480)
T ss_pred HHHHHHHH----c-CCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHc
Confidence 55444442 2 555443211 334444555666 5555555544
No 423
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=51.05 E-value=1e+02 Score=31.46 Aligned_cols=83 Identities=14% Similarity=0.176 Sum_probs=50.6
Q ss_pred HHHHHHHHcCCHHHHHHHH----H--cCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044791 251 ADLARLCQEGKVKEAIELM----D--KGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~----~--~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k 324 (623)
.=|.+++..++|.+++... . +.+.|. ..-.-|-.|.+.+....+.++-...+..--.-+..-|.+++..|..
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 3477888888888887654 2 233333 3444455567777777777777776664222234446666666554
Q ss_pred -----cCCHHHHHHHH
Q 044791 325 -----CGSMTDARRVF 335 (623)
Q Consensus 325 -----~g~~~~A~~lf 335 (623)
.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 36666666654
No 424
>KOG1676 consensus K-homology type RNA binding proteins [RNA processing and modification]
Probab=50.88 E-value=83 Score=35.30 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=16.4
Q ss_pred CCcccccceeeee-------ehhccccccc-ccCCCCC
Q 044791 34 PQNNIIGKTLTLS-------LAKTLSTSAV-EYNTPPP 63 (623)
Q Consensus 34 ~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~ 63 (623)
|..|-.-|+|+.. -+|+|----+ ++-++.|
T Consensus 358 p~~~~~ektf~IrG~~~QIdhAk~LIr~kvg~~~~n~~ 395 (600)
T KOG1676|consen 358 PNGNPKEKTFVIRGDKRQIDHAKQLIRDKVGDIAPNTP 395 (600)
T ss_pred CCCCccceEEEEecCcccchHHHHHHHHHhcccCCCCC
Confidence 4555566777663 4566655555 4334444
No 425
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=50.53 E-value=1.2e+02 Score=31.38 Aligned_cols=115 Identities=11% Similarity=0.166 Sum_probs=66.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 044791 317 KVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEE 396 (623)
Q Consensus 317 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~ 396 (623)
.++..+.+..++.+.++.++.|. .+..-...|..+...|+|..|+++..+..+. +. +..-|+++=.. ..++++
T Consensus 103 ~Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L---~~~L~e 175 (291)
T PF10475_consen 103 EILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHL---SSQLQE 175 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHH---hHHHHH
Confidence 35566666667777777666663 4445666778888999999999988887753 10 10111111111 122333
Q ss_pred HHHHHHHHHhh----cCCCCCccchhhHHHHHHhcCCHHHHHHHHH
Q 044791 397 AFIHFESMKSE----FGISPGTEHYLGLVGVLGKCGHLFEAQQFIE 438 (623)
Q Consensus 397 A~~l~~~m~~~----~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~ 438 (623)
.....+++... .-..-|...|..+++||.-.|+...+.+-+.
T Consensus 176 ~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~ 221 (291)
T PF10475_consen 176 TLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQ 221 (291)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 33333322211 1124577889999999998888776664443
No 426
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=50.50 E-value=24 Score=22.39 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=17.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 383 AVFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 383 ~li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
.+..++.+.|+.++|.++|++++++
T Consensus 5 ~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 5 RLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4455666677777777777777754
No 427
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=48.78 E-value=76 Score=28.36 Aligned_cols=60 Identities=10% Similarity=-0.035 Sum_probs=45.9
Q ss_pred ccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHHcCChhHHHHHHHHHH
Q 044791 414 TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWE-ALRNYARIHGDIDLEDHAEELMV 474 (623)
Q Consensus 414 ~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~-~Li~a~~~~g~~~~A~~~~~~~~ 474 (623)
..+-.++..++.-.|..++|.++++. ++..++-...| -++..|....+.++..++.+.+.
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~-FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~l 126 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSK-FKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEYL 126 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhc-CCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 34556788888889999999999999 77666655555 58889999988887777766654
No 428
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=48.76 E-value=35 Score=38.74 Aligned_cols=9 Identities=56% Similarity=0.789 Sum_probs=4.0
Q ss_pred cceeeeeeh
Q 044791 40 GKTLTLSLA 48 (623)
Q Consensus 40 ~~~~~~~~~ 48 (623)
|+.+...++
T Consensus 353 gk~l~V~~a 361 (562)
T TIGR01628 353 GKPLYVALA 361 (562)
T ss_pred CceeEEEec
Confidence 444444444
No 429
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.47 E-value=49 Score=25.48 Aligned_cols=26 Identities=15% Similarity=0.226 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~ 370 (623)
-.-.+|.||...|++++|.++.+++.
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33344555555555555555555444
No 430
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=47.84 E-value=1.3e+02 Score=28.65 Aligned_cols=39 Identities=10% Similarity=0.163 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
+++|...|++... ..|+..+|+.-+..+. +|-+++.++.
T Consensus 96 F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~ 134 (186)
T PF06552_consen 96 FEKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIH 134 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHH
Confidence 3455555555554 3677777777776653 3555555554
No 431
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=47.80 E-value=3.6e+02 Score=29.81 Aligned_cols=113 Identities=8% Similarity=0.060 Sum_probs=74.2
Q ss_pred CCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh---cCChHHHHHHHHHHHHcCChHHHHHH
Q 044791 290 PKWYENAK-KVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMA---DRSMDSWHLMINGYADNGLGDEGLQL 365 (623)
Q Consensus 290 ~g~~~~A~-~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~---~~~~~tyn~Li~~~~~~g~~eeA~~l 365 (623)
.|++..|- ++++-++...-.|+.+..-+ ..+...|+++.|...+.... ..+..+-.+++....+.|++++|+.+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 45555444 44555554433455444433 34566789999988876554 34556888999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 366 FEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 366 ~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
-+-|+...++- ...........-..|-+|++.-.|+++.
T Consensus 380 a~~~l~~eie~-~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 380 AEMMLSNEIED-EEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHhccccCC-hhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 88888776653 2222222223344577889988888876
No 432
>KOG1883 consensus Cofactor required for Sp1 transcriptional activation, subunit 3 [Transcription]
Probab=47.77 E-value=4.7 Score=47.76 Aligned_cols=7 Identities=0% Similarity=0.031 Sum_probs=2.7
Q ss_pred eeeeehh
Q 044791 43 LTLSLAK 49 (623)
Q Consensus 43 ~~~~~~~ 49 (623)
||.+.+|
T Consensus 1377 fi~~~s~ 1383 (1517)
T KOG1883|consen 1377 FITHQSE 1383 (1517)
T ss_pred hhhhccc
Confidence 3333333
No 433
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=47.67 E-value=3.9e+02 Score=28.78 Aligned_cols=84 Identities=12% Similarity=0.041 Sum_probs=50.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhH------------HHHHHhcCCHHHHHHHHHhhCC----CCCCH
Q 044791 384 VFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGL------------VGVLGKCGHLFEAQQFIEQKLP----FEPTA 447 (623)
Q Consensus 384 li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~L------------i~~~~k~g~~e~A~~lf~~~m~----~~Pd~ 447 (623)
|..-+-..|++++|..++.+.. +.||.+| +..|.-.+++-.|--+-++ +. -+||+
T Consensus 137 L~~ike~~Gdi~~Aa~il~el~--------VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skK-I~~K~F~~~~~ 207 (439)
T KOG1498|consen 137 LAKIKEEQGDIAEAADILCELQ--------VETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKK-INKKFFEKPDV 207 (439)
T ss_pred HHHHHHHcCCHHHHHHHHHhcc--------hhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-hhHHhcCCccH
Confidence 3445667788888888776553 2334332 2345556777777766666 32 24554
Q ss_pred -----HHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 448 -----EFWEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 448 -----~ty~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
.-|+.|+......+.+=.+.+.++.+.+.
T Consensus 208 ~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t 241 (439)
T KOG1498|consen 208 QELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDT 241 (439)
T ss_pred HHHHHHHHHHHHHhcccccchhhHHHHHHHHhcc
Confidence 46788888776666665455555555443
No 434
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=47.40 E-value=75 Score=35.17 Aligned_cols=73 Identities=11% Similarity=0.142 Sum_probs=56.2
Q ss_pred CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCc
Q 044791 413 GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPK 492 (623)
Q Consensus 413 ~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~ 492 (623)
++.-|-.++.-|.-.++++.|.++-+- .+ +...|.+|......+.++..++.++..+.+ .|
T Consensus 572 sV~py~~iL~e~~sssKWeqavRLCrf-v~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~---------------id 632 (737)
T KOG1524|consen 572 SVNPYPEILHEYLSSSKWEQAVRLCRF-VQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQ---------------ID 632 (737)
T ss_pred eccccHHHHHHHhccchHHHHHHHHHh-cc---chHHHHHHHHHHHhhccccHHHHHHHHhhc---------------hh
Confidence 455677888899999999999999887 43 556788888877888888878888887776 45
Q ss_pred hhhHHHHhhhcC
Q 044791 493 KRTAISILDGKS 504 (623)
Q Consensus 493 ~~t~~~li~~~~ 504 (623)
++.|..-|.+.-
T Consensus 633 KVsyin~iK~lt 644 (737)
T KOG1524|consen 633 KVSYINHIKALT 644 (737)
T ss_pred hHHHHHHHhccC
Confidence 667766666554
No 435
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=47.12 E-value=1.2e+02 Score=30.06 Aligned_cols=92 Identities=18% Similarity=0.225 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhh
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQP---NEQTF--LAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLG 419 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P---d~~ty--~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~ 419 (623)
-+|.||--|.-...+.+|-+.|.+ +.|+.+ |..++ -.-|....+.|++++|++....+.-. -++-|...+-.
T Consensus 28 d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~ 104 (228)
T KOG2659|consen 28 DLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFH 104 (228)
T ss_pred hHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHH
Confidence 344444444333334445554433 344444 22222 23455566777777777776665532 23333222222
Q ss_pred HHH----HHHhcCCHHHHHHHHHh
Q 044791 420 LVG----VLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 420 Li~----~~~k~g~~e~A~~lf~~ 439 (623)
|.. -+.+.|..++|+++++.
T Consensus 105 Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 105 LQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Confidence 221 24566777777777776
No 436
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.79 E-value=99 Score=30.97 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=9.9
Q ss_pred HHHHHHcCChHHHHHHHHHH
Q 044791 350 INGYADNGLGDEGLQLFEQM 369 (623)
Q Consensus 350 i~~~~~~g~~eeA~~l~~eM 369 (623)
...|.+.|++++|.++|+.+
T Consensus 185 A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 185 AEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 33345555555555555544
No 437
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=46.78 E-value=3.8e+02 Score=28.35 Aligned_cols=174 Identities=14% Similarity=0.146 Sum_probs=105.1
Q ss_pred CCCCCH---HHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCCCCHHHHH-----HHHHHHHHcCCHHHHHHHHHHhhc
Q 044791 272 GVKADA---SCFYTLFELCGNPK---WYENAKKVHDYFLQSTIRGDLVLNN-----KVIEMYGKCGSMTDARRVFDHMAD 340 (623)
Q Consensus 272 ~~~pd~---~ty~~Ll~~~~~~g---~~~~A~~l~~~m~~~g~~pd~~~y~-----~Li~~y~k~g~~~~A~~lf~~m~~ 340 (623)
.++|+. ..||++++.-.... .++.|..+|.- -. ....|- -+.+.++|.++-+.+..+-+.+..
T Consensus 121 ~FkP~~~klA~fhA~v~~~L~~p~S~yye~a~~Ylsg-----~~-~~~~WQ~lGLQGIAD~~aRl~~~~~~~~l~~al~~ 194 (340)
T PF12069_consen 121 TFKPSQEKLAMFHAQVRAQLGQPASQYYEHAQAYLSG-----QL-GWDNWQTLGLQGIADICARLDQEDNAQLLRKALPH 194 (340)
T ss_pred ccCCChHHHHHHHHHHHHHcCCCcchhHHHHHHHHcC-----Cc-chhHHHHhhhhHHHHHHHHhcccchHHHHHHHHhh
Confidence 567875 57888888665542 46666665521 11 123333 457888898888887777777766
Q ss_pred CChHHHHHHHHHHHHcCChHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhh
Q 044791 341 RSMDSWHLMINGYADNGLGDEG-LQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLG 419 (623)
Q Consensus 341 ~~~~tyn~Li~~~~~~g~~eeA-~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~ 419 (623)
--.....+|..++-...-.++. ..+++.+... +|..+...++++++...........++.+... ....+.. .
T Consensus 195 lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~~~~~~i~~~L~~-~~~~~~e---~ 267 (340)
T PF12069_consen 195 LPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASDLVAILIDALLQS-PRLCHPE---V 267 (340)
T ss_pred CChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchhHHHHHHHHHhcC-cccCChH---H
Confidence 5555566666655544433333 3344554443 89999999999999887777666666666654 3222333 3
Q ss_pred HHHHHHhc----CCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH
Q 044791 420 LVGVLGKC----GHLFEAQQFIEQKLPFEPTAEFWEALRNYARI 459 (623)
Q Consensus 420 Li~~~~k~----g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~ 459 (623)
|+..-+|+ .+.+.+..++++ +...+|...|+.+..-+..
T Consensus 268 Li~IAgR~W~~L~d~~~l~~fle~-LA~~~~~~lF~qlfaDLv~ 310 (340)
T PF12069_consen 268 LIAIAGRCWQWLKDPQLLRLFLER-LAQQDDQALFNQLFADLVM 310 (340)
T ss_pred HHHHHhcCchhcCCHHHHHHHHHH-HHcccHHHHHHHHHHHHHh
Confidence 33333332 456666666776 5545556666666554443
No 438
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.74 E-value=1.9e+02 Score=31.08 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=43.4
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHH--HcCCHHHHHHHHHHhhcCCh
Q 044791 284 FELCGNPKWYENAKKVHDYFLQSTIRGDLV--LNNKVIEMYG--KCGSMTDARRVFDHMADRSM 343 (623)
Q Consensus 284 l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--~y~~Li~~y~--k~g~~~~A~~lf~~m~~~~~ 343 (623)
+..+.+.+++..|.++++.+... +.++.. .|..|..+|. ...++++|.+.|+.....+.
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~ 200 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDK 200 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhh
Confidence 34556889999999999999987 555444 5556666665 45778899999998765543
No 439
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=45.82 E-value=71 Score=34.58 Aligned_cols=57 Identities=11% Similarity=0.113 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhc--C---------ChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMAD--R---------SMDSWHLMINGYADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~--~---------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~ 370 (623)
+.-.|++.+|-.|++..|+++++.+.- + .+.+|--+.-+|...+++.+|+++|...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566777777777777777775531 1 22266667777777777777777776654
No 440
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=45.52 E-value=61 Score=24.20 Aligned_cols=30 Identities=10% Similarity=0.165 Sum_probs=23.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhcCCCCC
Q 044791 452 ALRNYARIHGDIDLEDHAEELMVDLDPSKA 481 (623)
Q Consensus 452 ~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~ 481 (623)
.|.-|+.+.|+.+.|.+..+.+.+++|.+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 345578899999999999999999987753
No 441
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=45.48 E-value=3.2e+02 Score=27.14 Aligned_cols=163 Identities=14% Similarity=0.048 Sum_probs=83.1
Q ss_pred CCCCCH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH-HHHHH
Q 044791 272 GVKADA-SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD-SWHLM 349 (623)
Q Consensus 272 ~~~pd~-~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~-tyn~L 349 (623)
.+.|+. ..||-|.--+...|+++.|.+.|+...+....-+-...|-=| ++.-.|++.-|.+=|-..-..|.. .|.+|
T Consensus 93 ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~L 171 (297)
T COG4785 93 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSL 171 (297)
T ss_pred hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHH
Confidence 356664 568888888888888888888888887743221222222222 333457777777666555433322 23332
Q ss_pred HHHHH-HcCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC------CCccchhhHH
Q 044791 350 INGYA-DNGLGDEGLQ-LFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGIS------PGTEHYLGLV 421 (623)
Q Consensus 350 i~~~~-~~g~~eeA~~-l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~------p~~~ty~~Li 421 (623)
=--+. ..-+..+|.. +.++.... |..-|...|-.|.- |++. .+.+++++... .-. .-.+||--|.
T Consensus 172 WLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~ 244 (297)
T COG4785 172 WLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYL-GKIS-EETLMERLKAD-ATDNTSLAEHLTETYFYLG 244 (297)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHH-hhcc-HHHHHHHHHhh-ccchHHHHHHHHHHHHHHH
Confidence 11111 2223445544 33333322 33334333333211 2211 11223333221 000 1135677788
Q ss_pred HHHHhcCCHHHHHHHHHhhCC
Q 044791 422 GVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 422 ~~~~k~g~~e~A~~lf~~~m~ 442 (623)
.-|...|+.++|..+|+-+|.
T Consensus 245 K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 245 KYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred HHHhccccHHHHHHHHHHHHH
Confidence 888888888888888887554
No 442
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=45.15 E-value=98 Score=29.55 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 044791 308 IRGDLVLNNKVIEMYGKCGSMTDARRVFDHMA 339 (623)
Q Consensus 308 ~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~ 339 (623)
..|+..+|..++.++...|+.++|..+.+++.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45677777777777777777777776666664
No 443
>PF02162 XYPPX: XYPPX repeat (two copies); InterPro: IPR006031 This repeat is found in a wide variety of proteins and generally consists of the motif XYPPX where X can be any amino acid. The family includes annexin VII ANX7_DICDI, the carboxy tail of certain rhodopsins OPSD_LOLSU. This family also includes plaque matrix proteins, however this motif is embedded in a ten residue repeat in FP1_MYTED. The molecular function of this repeat is unknown. It is also not clear is all the members of this family share a common evolutionary ancestor due to its short length and biased amino acid composition.
Probab=45.00 E-value=16 Score=19.63 Aligned_cols=6 Identities=67% Similarity=1.674 Sum_probs=2.5
Q ss_pred CCCCCC
Q 044791 118 PNRGYP 123 (623)
Q Consensus 118 ~~~~~~ 123 (623)
|.+|||
T Consensus 3 ppqG~p 8 (15)
T PF02162_consen 3 PPQGYP 8 (15)
T ss_pred CCcCCC
Confidence 344444
No 444
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=43.96 E-value=3.6e+02 Score=27.27 Aligned_cols=81 Identities=14% Similarity=0.100 Sum_probs=39.7
Q ss_pred cCCHHHHHHHHHcCCC-CCHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHH
Q 044791 259 EGKVKEAIELMDKGVK-ADASCFYTLFELCGN----PKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK----CGSMT 329 (623)
Q Consensus 259 ~g~~~~A~~l~~~~~~-pd~~ty~~Ll~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k----~g~~~ 329 (623)
.+.+..|.+.+..... -+......+...+.. ..+..+|.++|..+.+.|. ......|..+|.. ..+..
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d~~ 130 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLDLV 130 (292)
T ss_pred cccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccCHH
Confidence 4455555555543221 122233333333322 2346667777776655553 2333345555554 33666
Q ss_pred HHHHHHHHhhcCC
Q 044791 330 DARRVFDHMADRS 342 (623)
Q Consensus 330 ~A~~lf~~m~~~~ 342 (623)
+|...|++..+.+
T Consensus 131 ~A~~~~~~Aa~~g 143 (292)
T COG0790 131 KALKYYEKAAKLG 143 (292)
T ss_pred HHHHHHHHHHHcC
Confidence 6777776665543
No 445
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=43.76 E-value=77 Score=23.00 Aligned_cols=34 Identities=15% Similarity=0.276 Sum_probs=23.2
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFS 386 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~ 386 (623)
..+.|-.+++..++++|.+.|+..+...|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3556667777777777777777777766666554
No 446
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=43.67 E-value=2.7e+02 Score=26.82 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=27.3
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 044791 420 LVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHG 461 (623)
Q Consensus 420 Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g 461 (623)
.+..|.+.|.+++|.+++++.++ .++.......+....+..
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~K 157 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREK 157 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHcc
Confidence 45568888999999999998555 666655554444444333
No 447
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=43.41 E-value=5.4e+02 Score=29.17 Aligned_cols=226 Identities=9% Similarity=0.049 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHcCCCCC-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044791 246 LPPSVADLARLCQEGKVKEAIELMDKGVKAD-ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324 (623)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~A~~l~~~~~~pd-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k 324 (623)
.......+.-..|.=..+.-.+++++-.. . ...+..+++++...|--....-+.+.+....+.+....--.+.....-
T Consensus 309 ~~~~f~~lv~~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~ 387 (574)
T smart00638 309 AAAKFLRLVRLLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNKKITPLEAAQLLAVLPHTA 387 (574)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhh
Q ss_pred cCCHHHHHHHHHHhhcCChH------------HHHHHHHHHHHcCCh------HHHHHHHHHHHHcCC-CCCHHHHHHHH
Q 044791 325 CGSMTDARRVFDHMADRSMD------------SWHLMINGYADNGLG------DEGLQLFEQMRKLGL-QPNEQTFLAVF 385 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~~~~~------------tyn~Li~~~~~~g~~------eeA~~l~~eM~~~g~-~Pd~~ty~~li 385 (623)
..=-.+.++.+.+|.+...+ +|.+|+..+|..... ++.+..+.+.+.... .-|..--...|
T Consensus 388 ~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~L 467 (574)
T smart00638 388 RYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYL 467 (574)
T ss_pred hcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHH
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhc--CCHHHHHHHHHh------------------hCCCCC
Q 044791 386 SACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKC--GHLFEAQQFIEQ------------------KLPFEP 445 (623)
Q Consensus 386 ~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~--g~~e~A~~lf~~------------------~m~~~P 445 (623)
.+++..|.......+-..+. . ........-...|.++.+. ...+++..++-. +|...|
T Consensus 468 kaLGN~g~~~~i~~l~~~l~-~-~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P 545 (574)
T smart00638 468 KALGNAGHPSSIKVLEPYLE-G-AEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAEPPEVRMAAVLVLMETKP 545 (574)
T ss_pred HhhhccCChhHHHHHHHhcC-C-CCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCC
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 044791 446 TAEFWEALRNYARIHGDIDLEDHAEELMV 474 (623)
Q Consensus 446 d~~ty~~Li~a~~~~g~~~~A~~~~~~~~ 474 (623)
+...+..+........+...+-.++..++
T Consensus 546 ~~~~l~~ia~~l~~E~~~QV~sfv~S~l~ 574 (574)
T smart00638 546 SVALLQRIAELLNKEPNLQVASFVYSHIR 574 (574)
T ss_pred CHHHHHHHHHHHhhcCcHHHHHHhHHhhC
No 448
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=43.38 E-value=4.5e+02 Score=28.31 Aligned_cols=172 Identities=9% Similarity=0.085 Sum_probs=96.6
Q ss_pred cCCHHHHHHHH---Hc------CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHH----H
Q 044791 259 EGKVKEAIELM---DK------GVKADASCFYTLFELCGNPKWYENAKKVHDYFL-QSTIRGDLVLNNKVIEMYG----K 324 (623)
Q Consensus 259 ~g~~~~A~~l~---~~------~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~-~~g~~pd~~~y~~Li~~y~----k 324 (623)
.+++++|++-+ ++ ...-+...+..+++.|..+++|+.--+...-+. +.|-- -.+...|+.-++ .
T Consensus 25 ~~~~~~~ie~Ll~~EkqtR~~~D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgql--k~ai~~Mvq~~~~y~~~ 102 (439)
T KOG1498|consen 25 QIDLEAAIEELLNLEKQTRLASDMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQL--KQAIQSMVQQAMTYIDG 102 (439)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHhccC
Confidence 67788888765 21 344455668888999999999987665554432 23321 111122222111 1
Q ss_pred cCCHHHHHHHHHHhhc---C-----ChH--HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH----------
Q 044791 325 CGSMTDARRVFDHMAD---R-----SMD--SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAV---------- 384 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~---~-----~~~--tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~l---------- 384 (623)
..+.+--+.+.+.++. . ... .--.|..-+-..|++++|..++.+.. +.||.++
T Consensus 103 ~~d~~~k~~li~tLr~VtegkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~-------VETygsm~~~ekV~fiL 175 (439)
T KOG1498|consen 103 TPDLETKIKLIETLRTVTEGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQ-------VETYGSMEKSEKVAFIL 175 (439)
T ss_pred CCCchhHHHHHHHHHHhhcCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcc-------hhhhhhhHHHHHHHHHH
Confidence 1222333333333221 1 001 22335555777888888888877653 2344443
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHhhcCCCCCc-----cchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 385 --FSACGSADAIEEAFIHFESMKSEFGISPGT-----EHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 385 --i~a~~~~g~~e~A~~l~~~m~~~~g~~p~~-----~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
++.|...+|+-.|--+-..+..++=-.||. .-|+.||......+.+-++.+.|+.
T Consensus 176 EQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yra 237 (439)
T KOG1498|consen 176 EQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRA 237 (439)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHH
Confidence 455666677777766666655443223332 3577777777777888888888877
No 449
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=43.38 E-value=47 Score=34.25 Aligned_cols=43 Identities=12% Similarity=-0.056 Sum_probs=33.8
Q ss_pred CCCCHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHH
Q 044791 273 VKADASC-FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLN 315 (623)
Q Consensus 273 ~~pd~~t-y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y 315 (623)
+.+|..+ |+..|....+.||+++|+.++++.++.|+.--..+|
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 4466654 779999999999999999999999999976444443
No 450
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=43.35 E-value=51 Score=36.92 Aligned_cols=147 Identities=10% Similarity=0.028 Sum_probs=90.4
Q ss_pred CCHHHHHHHHHHHHHc--CCHHHHHHHHHHhhcCChHHHHHHHH---HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044791 310 GDLVLNNKVIEMYGKC--GSMTDARRVFDHMADRSMDSWHLMIN---GYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAV 384 (623)
Q Consensus 310 pd~~~y~~Li~~y~k~--g~~~~A~~lf~~m~~~~~~tyn~Li~---~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~l 384 (623)
|+..+..+++.-.... -.-+-|-.+|..|..++...|-+|=. .+.-.|....|.+.+.........-..+....|
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~l 648 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNL 648 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHH
Confidence 4444444444333321 23455667777887776654444322 233457788888877776644322233455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHHH
Q 044791 385 FSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-AEFWEALRNYAR 458 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-~~ty~~Li~a~~ 458 (623)
.....+.|.+..|-.++.....- . .....++-.+..+|.-..++++|++-|+.+|...|+ .+.-+.|...-|
T Consensus 649 a~~~~~~~~~~da~~~l~q~l~~-~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 649 ANLLIHYGLHLDATKLLLQALAI-N-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhhhhccHHHHHHHHHhh-c-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 66667777888888888776632 2 334556667788888888999999999888876663 455555555433
No 451
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=43.08 E-value=3.9e+02 Score=27.40 Aligned_cols=81 Identities=15% Similarity=-0.009 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhhcCC---CCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 044791 394 IEEAFIHFESMKSEFGI---SPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAE 470 (623)
Q Consensus 394 ~e~A~~l~~~m~~~~g~---~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~ 470 (623)
.+.|.+.|+.......- ..+......++...++.|..++...+++. .....+......++.+++...+.+...+++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~-~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l 224 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWEL-YKNSTSPEEKRRLLSALACSPDPELLKRLL 224 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHH-HHTTSTHHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHH-HhccCCHHHHHHHHHhhhccCCHHHHHHHH
Confidence 56777888887753111 33445555666667777776666666665 444567777888888888888887777777
Q ss_pred HHHHh
Q 044791 471 ELMVD 475 (623)
Q Consensus 471 ~~~~~ 475 (623)
+.+..
T Consensus 225 ~~~l~ 229 (324)
T PF11838_consen 225 DLLLS 229 (324)
T ss_dssp HHHHC
T ss_pred HHHcC
Confidence 77766
No 452
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=42.62 E-value=35 Score=24.44 Aligned_cols=25 Identities=12% Similarity=0.029 Sum_probs=16.7
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcC
Q 044791 283 LFELCGNPKWYENAKKVHDYFLQST 307 (623)
Q Consensus 283 Ll~~~~~~g~~~~A~~l~~~m~~~g 307 (623)
|..+|...|+.+.|.+++++++..|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5566777777777777777766543
No 453
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.21 E-value=5.1e+02 Score=30.84 Aligned_cols=168 Identities=11% Similarity=0.049 Sum_probs=0.0
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHH
Q 044791 285 ELCGNPKWYENAKKVHDYFLQSTIRGDL--VLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEG 362 (623)
Q Consensus 285 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA 362 (623)
+.|.+.|++++|+++-+.- |+. .++-.-.+.|...+++..|-++|-++ ..+|..+.--+....+.+ +
T Consensus 366 k~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t----~~~FEEVaLKFl~~~~~~-~ 434 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAET----LSSFEEVALKFLEINQER-A 434 (911)
T ss_pred HHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHh----hhhHHHHHHHHHhcCCHH-H
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHH------hcCCHH------------HHHHHHHHHHhhcCCCCCccchhhHHHHH
Q 044791 363 LQLFEQMRKLGLQPNEQTFLAVFSACG------SADAIE------------EAFIHFESMKSEFGISPGTEHYLGLVGVL 424 (623)
Q Consensus 363 ~~l~~eM~~~g~~Pd~~ty~~li~a~~------~~g~~e------------~A~~l~~~m~~~~g~~p~~~ty~~Li~~~ 424 (623)
++.|-.=+-..++|...+=..+|..+. +.++++ .-..+-.++.+.....-+...+.+....+
T Consensus 435 L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~ 514 (911)
T KOG2034|consen 435 LRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLL 514 (911)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 044791 425 GKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAE 470 (623)
Q Consensus 425 ~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~ 470 (623)
...|+.+++..+-.- |+ -|..++.-+...|.+++|.+++
T Consensus 515 ~~~~~~e~ll~fA~l-~~------d~~~vv~~~~q~e~yeeaLevL 553 (911)
T KOG2034|consen 515 ASHGRQEELLQFANL-IK------DYEFVVSYWIQQENYEEALEVL 553 (911)
T ss_pred HHccCHHHHHHHHHH-HH------HHHHHHHHHHHHHHHHHHHHHH
No 454
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=41.98 E-value=3.9e+02 Score=27.10 Aligned_cols=152 Identities=16% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhcCChH--HHHHHHHHHHHcCCh-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044791 316 NKVIEMYGKCGSMTDARRVFDHMADRSMD--SWHLMINGYADNGLG-----DEGLQLFEQMRKLGLQPNEQTFLAVFSAC 388 (623)
Q Consensus 316 ~~Li~~y~k~g~~~~A~~lf~~m~~~~~~--tyn~Li~~~~~~g~~-----eeA~~l~~eM~~~g~~Pd~~ty~~li~a~ 388 (623)
+.+|..+.+.+...+|..+.+.+..-.-. +.-.|+......... .....++....+- +..-..-+.+++.+.
T Consensus 86 ~~iL~~lL~~~~~~~a~~i~~~y~~l~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~l-l~~f~~~l~Ivv~C~ 164 (258)
T PF07064_consen 86 HHILRHLLRRNLDEEALEIASKYRSLPYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISL-LQEFPEYLEIVVNCA 164 (258)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhccCCCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHH-HHcCcchHHHHHHHH
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC----CCC-----CHHHHHHHHHHHHH
Q 044791 389 GSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP----FEP-----TAEFWEALRNYARI 459 (623)
Q Consensus 389 ~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~----~~P-----d~~ty~~Li~a~~~ 459 (623)
.|.. .+.+..+-...| .|. .|...|.+.|+++.|-.++-- +. ... +...-.-|+.....
T Consensus 165 RKtE-----~~~W~~LF~~lg-~P~-----dLf~~cl~~~~l~tAa~yLlV-l~~~e~~~~~~~~~~~~~al~LL~~a~~ 232 (258)
T PF07064_consen 165 RKTE-----VRYWPYLFDYLG-SPR-----DLFEECLENGNLKTAASYLLV-LQNLEGSSVVKDEESRQCALRLLVMALE 232 (258)
T ss_pred HhhH-----HHHHHHHHHhcC-CHH-----HHHHHHHHcCcHHHHHHHHHH-HHhcCCcchhhhHHHHHHHHHHHHHHHh
Q ss_pred cCChhHHHHHHHHHHhcCCCC
Q 044791 460 HGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 460 ~g~~~~A~~~~~~~~~m~~~~ 480 (623)
.|+++.+.++.+.+..+++.+
T Consensus 233 ~~~w~Lc~eL~RFL~~ld~~~ 253 (258)
T PF07064_consen 233 SGDWDLCFELVRFLKALDPEG 253 (258)
T ss_pred cccHHHHHHHHHHHHHhCccc
No 455
>PHA03100 ankyrin repeat protein; Provisional
Probab=41.85 E-value=4e+02 Score=29.14 Aligned_cols=169 Identities=11% Similarity=0.105 Sum_probs=81.8
Q ss_pred HHHcCCHHHHHHHHHcCCCCCHH---HHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcC--C
Q 044791 256 LCQEGKVKEAIELMDKGVKADAS---CFYTLFELCG-NPKWYENAKKVHDYFLQSTIRGDLVL--NNKVIEMYGKCG--S 327 (623)
Q Consensus 256 ~~~~g~~~~A~~l~~~~~~pd~~---ty~~Ll~~~~-~~g~~~~A~~l~~~m~~~g~~pd~~~--y~~Li~~y~k~g--~ 327 (623)
.+..|..+-+.-+++.|..++.. ..+.|..++. ..|+.+-+ +.+++.|..++... -.+.+...++.| +
T Consensus 80 a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 155 (480)
T PHA03100 80 YNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIV----EYLLDNGANVNIKNSDGENLLHLYLESNKID 155 (480)
T ss_pred HHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHH----HHHHHcCCCCCccCCCCCcHHHHHHHcCCCh
Confidence 56677777777777777665432 2334444432 55655543 34445565543221 234566666777 6
Q ss_pred HHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH--------HHHHHHHHHHhcCC--H
Q 044791 328 MTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQ--------TFLAVFSACGSADA--I 394 (623)
Q Consensus 328 ~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~--------ty~~li~a~~~~g~--~ 394 (623)
.+-+.-+++.-... +...++ .+...+..|..+ +++.+.+.|..++.. .+.+.+...+..|. .
T Consensus 156 ~~iv~~Ll~~g~din~~d~~g~t-pL~~A~~~~~~~----iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~ 230 (480)
T PHA03100 156 LKILKLLIDKGVDINAKNRYGYT-PLHIAVEKGNID----VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITL 230 (480)
T ss_pred HHHHHHHHHCCCCcccccCCCCC-HHHHHHHhCCHH----HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcH
Confidence 66555555433221 111222 344445556543 344444556555422 11334444455555 4
Q ss_pred HHHHHHHHHHHhhcCCCCCc---cchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 395 EEAFIHFESMKSEFGISPGT---EHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 395 e~A~~l~~~m~~~~g~~p~~---~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
+-+.. +.+. |..++. .-.+. +...+..|..+-+.-+++.
T Consensus 231 ~iv~~----Ll~~-g~din~~d~~g~Tp-L~~A~~~~~~~iv~~Ll~~ 272 (480)
T PHA03100 231 EVVNY----LLSY-GVPINIKDVYGFTP-LHYAVYNNNPEFVKYLLDL 272 (480)
T ss_pred HHHHH----HHHc-CCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHHc
Confidence 43333 3322 554432 22333 4444566776666555554
No 456
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=41.85 E-value=1.3e+02 Score=31.21 Aligned_cols=16 Identities=6% Similarity=0.457 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHcCChH
Q 044791 345 SWHLMINGYADNGLGD 360 (623)
Q Consensus 345 tyn~Li~~~~~~g~~e 360 (623)
+|.-|+.+++..|+.+
T Consensus 323 ~yaPLL~af~s~g~sE 338 (412)
T KOG2297|consen 323 QYAPLLAAFCSQGQSE 338 (412)
T ss_pred hhhHHHHHHhcCChHH
Confidence 4455555555555443
No 457
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=41.48 E-value=42 Score=36.70 Aligned_cols=103 Identities=13% Similarity=0.044 Sum_probs=63.6
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHhhcCChH---HHHHHHHHHHHcCCh
Q 044791 284 FELCGNPKWYENAKKVHDYFLQSTIRGDLVL-NNKVIEMYGKCGSMTDARRVFDHMADRSMD---SWHLMINGYADNGLG 359 (623)
Q Consensus 284 l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~-y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~---tyn~Li~~~~~~g~~ 359 (623)
++.+.+.++++.|+.++.+.++ +.|+... |..-..++.+.+++..|+.=+.+..+.+.. .|---..++.+.+++
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 4445566777788888877777 4554333 333346777777777777766666655522 333334445555666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044791 360 DEGLQLFEQMRKLGLQPNEQTFLAVFSACGS 390 (623)
Q Consensus 360 eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~ 390 (623)
.+|+..|+..+. +.|+..-...++.-|-+
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 777777766655 57777777777766543
No 458
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=41.26 E-value=71 Score=30.53 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=12.5
Q ss_pred CCCccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 411 SPGTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 411 ~p~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
.|+..+|..++.++...|+.++|.++.++
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~ 169 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLAR 169 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444444444444444444444444
No 459
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=41.15 E-value=3.2e+02 Score=30.68 Aligned_cols=56 Identities=13% Similarity=0.110 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHcC-CC-CCHHH---HHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 044791 251 ADLARLCQEGKVKEAIELMDKG-VK-ADASC---FYTLFELCGNPKWYENAKKVHDYFLQS 306 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~-~~-pd~~t---y~~Ll~~~~~~g~~~~A~~l~~~m~~~ 306 (623)
.|+.-|.+.+++++|+.++... -. -...+ .+.+.+.+.+..--++.+..++.++..
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 6788899999999999988641 11 12233 344445555554445555566666554
No 460
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=41.12 E-value=3.5e+02 Score=26.30 Aligned_cols=201 Identities=10% Similarity=0.004 Sum_probs=101.0
Q ss_pred cCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHhhcC--------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 044791 306 STIRGDLVLNNKVIEMYGKCG----SMTDARRVFDHMADR--------SMDSWHLMINGYADNGLGDEGLQLFEQMRKLG 373 (623)
Q Consensus 306 ~g~~pd~~~y~~Li~~y~k~g----~~~~A~~lf~~m~~~--------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g 373 (623)
.|+..|...++-++..+.... .++-++.+=.+...+ |....-+-|..|-+.||+.+--.+|-...
T Consensus 2 AGm~l~~Eh~~yiiklL~qlq~s~qEi~~vl~~KsR~~~~~~~~~~~~~l~~~~~eie~Ckek~DW~klg~ly~nv~--- 78 (233)
T PF14669_consen 2 AGMVLDPEHFNYIIKLLYQLQASKQEIDAVLEIKSRLQARQFKKNWLSDLASAVVEIEHCKEKGDWTKLGNLYINVK--- 78 (233)
T ss_pred CcccCCHHHHHHHHHHHHhhcCchhhhHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhhccHHHHhhHHhhHH---
Confidence 467778888888877776543 334333333322221 22233334445666666655544443332
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHH
Q 044791 374 LQPNEQTFLAVFSACGSADAIEEAFIHFESMKSE-FGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEA 452 (623)
Q Consensus 374 ~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~-~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~ 452 (623)
.+|-+.+++..-.....+...+ ..-+ -.+-|....++-++.-.-+++-+.|-.-++ -+
T Consensus 79 ------------~gce~~~dlq~~~~~va~~Ltkd~Kdk-~~vPFceFAetV~k~~q~~e~dK~~LGRiG--------iS 137 (233)
T PF14669_consen 79 ------------MGCEKFADLQRFCACVAEALTKDSKDK-PGVPFCEFAETVCKDPQNDEVDKTLLGRIG--------IS 137 (233)
T ss_pred ------------hhcCCHHHHHHHHHHHHHHHHhccccc-CCCCHHHHHHHHhcCCccchhhhhhhhHHH--------HH
Confidence 2333333333322222222211 1112 233466666666665555554433322033 24
Q ss_pred HHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCC---CCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHH
Q 044791 453 LRNYARIHGDIDLEDHAEELMVDLDPSKADPKKI---PTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKE 529 (623)
Q Consensus 453 Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~---~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~ 529 (623)
++-.|.+.-.+.++.++++.|.++...-.....+ ....+.-..-+.....|.+.|.. |.|+.+++ +
T Consensus 138 ~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsi--------dGA~~vLr---e 206 (233)
T PF14669_consen 138 LMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSI--------DGALWVLR---E 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCc--------hHHHHHHh---c
Confidence 5566777778888889999988875543322111 12233334445555666666654 67777654 4
Q ss_pred CCcccCcceeee
Q 044791 530 STYVPDTRYVLH 541 (623)
Q Consensus 530 ~Gi~Pd~~t~~~ 541 (623)
....-++.+|-+
T Consensus 207 seWii~t~lWPC 218 (233)
T PF14669_consen 207 SEWIISTPLWPC 218 (233)
T ss_pred cceeecCCCCCC
Confidence 554445544443
No 461
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=40.69 E-value=2.9e+02 Score=28.30 Aligned_cols=143 Identities=13% Similarity=0.135 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-ChHHHHHHHHHHHHcCChHHHHHHHH
Q 044791 293 YENAKKVHDYFLQSTI----RGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR-SMDSWHLMINGYADNGLGDEGLQLFE 367 (623)
Q Consensus 293 ~~~A~~l~~~m~~~g~----~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-~~~tyn~Li~~~~~~g~~eeA~~l~~ 367 (623)
.+.|.+.|+.....+. ..+......++....+.|..++-..+++..... +......++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 4567777777776422 345566666777777777766666666665543 44567777777777777777777777
Q ss_pred HHHHcC-CCCCHHHHHHHHHHHHhcCC--HHHHHHHH----HHHHhhcCCCCCccchhhHHHH----HHhcCCHHHHHHH
Q 044791 368 QMRKLG-LQPNEQTFLAVFSACGSADA--IEEAFIHF----ESMKSEFGISPGTEHYLGLVGV----LGKCGHLFEAQQF 436 (623)
Q Consensus 368 eM~~~g-~~Pd~~ty~~li~a~~~~g~--~e~A~~l~----~~m~~~~g~~p~~~ty~~Li~~----~~k~g~~e~A~~l 436 (623)
.....+ +..... ..++.++...+. .+.+++.+ +.+.+.++- +......++.+ ++.....++..++
T Consensus 226 ~~l~~~~v~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~n~~~i~~~~~~--~~~~~~~~~~~~~~~~~t~~~~~~~~~f 301 (324)
T PF11838_consen 226 LLLSNDKVRSQDI--RYVLAGLASSNPVGRDLAWEFFKENWDAIIKKFGT--NSSALSRVIKSFAGNFSTEEQLDELEEF 301 (324)
T ss_dssp HHHCTSTS-TTTH--HHHHHHHH-CSTTCHHHHHHHHHHCHHHHHCHC-T--TSHCCHHHHHCCCTT--SHHHHHHHHHH
T ss_pred HHcCCcccccHHH--HHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 777643 444332 233334442332 25555444 333322211 11133333333 3334456666666
Q ss_pred HHh
Q 044791 437 IEQ 439 (623)
Q Consensus 437 f~~ 439 (623)
|+.
T Consensus 302 ~~~ 304 (324)
T PF11838_consen 302 FED 304 (324)
T ss_dssp HHH
T ss_pred Hhh
Confidence 644
No 462
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=40.39 E-value=1.9e+02 Score=23.79 Aligned_cols=63 Identities=14% Similarity=0.230 Sum_probs=43.3
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHH
Q 044791 296 AKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEG 362 (623)
Q Consensus 296 A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA 362 (623)
+..+++.+.+.|+- +... .-..-+...+.+.|.++++.+..++..+|..+.+++...|...-|
T Consensus 18 ~~~v~~~L~~~~Vl-t~~~---~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVF-TPDM---IEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCC-CHHH---HHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 34567777777754 2222 222234556788899999999889988999988888887765444
No 463
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=40.36 E-value=4.1e+02 Score=28.87 Aligned_cols=87 Identities=14% Similarity=0.045 Sum_probs=48.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHHH----------------HHHHHHHHhCCCCHHHHHHHHHHHHHc--CCCCCH
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADASC----------------FYTLFELCGNPKWYENAKKVHDYFLQS--TIRGDL 312 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~t----------------y~~Ll~~~~~~g~~~~A~~l~~~m~~~--g~~pd~ 312 (623)
+++..+....+...-++....|..|+.++ .--||+...-.|+.....+.++.|.+. |..|..
T Consensus 193 nil~slv~ksqi~~ql~~~~s~~dp~~va~~~g~s~~y~~LgyfsL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c 272 (525)
T KOG3677|consen 193 NILHSLVDKSQISIQLTASVSNKDPALVALIFGASQPYANLGYFSLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMC 272 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccccHHHhhhHHHHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccce
Confidence 44566665555655555555555544322 223455555567766666666666553 333332
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHh
Q 044791 313 -VLNNKVIEMYGKCGSMTDARRVFDHM 338 (623)
Q Consensus 313 -~~y~~Li~~y~k~g~~~~A~~lf~~m 338 (623)
+|| -+.-+|.-.|++.+|.++|-.+
T Consensus 273 ~VTY-~VGFayLmmrryadai~~F~ni 298 (525)
T KOG3677|consen 273 RVTY-QVGFAYLMMRRYADAIRVFLNI 298 (525)
T ss_pred eEee-ehhHHHHHHHHHHHHHHHHHHH
Confidence 232 3455666667777777777655
No 464
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=40.04 E-value=2.4e+02 Score=24.09 Aligned_cols=101 Identities=15% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK-CGSMTDARRVFDHMADRSMDSWHLMINGYADNG 357 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k-~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g 357 (623)
....++.-|...+++++|...+.++... -.-...++..+..++-+ ...-+.+..++..+.+.+..+=+.+..|+.+
T Consensus 4 ~i~~~l~ey~~~~D~~ea~~~l~~L~~~-~~~~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~~~~~~~~~~~f~~-- 80 (113)
T smart00544 4 KIFLIIEEYLSSGDTDEAVHCLLELKLP-EQHHEVVKVLLTCALEEKRTYREMYSVLLSRLCQANVISTKQFEKGFWR-- 80 (113)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcCCcCHHHHHHHHHH--
Q ss_pred ChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHH
Q 044791 358 LGDEGLQLFEQMRKLGL-QPNEQTFLAVFSACG 389 (623)
Q Consensus 358 ~~eeA~~l~~eM~~~g~-~Pd~~ty~~li~a~~ 389 (623)
+++.|.+..+ .|....+..-+-+.+
T Consensus 81 -------~~~~l~dl~~D~P~a~~~la~~~a~~ 106 (113)
T smart00544 81 -------LLEDIEDLELDIPNAWRNLAEFVARL 106 (113)
T ss_pred -------HHhhChhhhcccccHHHHHHHHHHHH
No 465
>PRK12356 glutaminase; Reviewed
Probab=39.79 E-value=1.2e+02 Score=31.81 Aligned_cols=153 Identities=10% Similarity=0.023 Sum_probs=75.2
Q ss_pred CCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCC
Q 044791 409 GISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPT 488 (623)
Q Consensus 409 g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~ 488 (623)
|.+|+-..||.++..-...|+...- | +.-...+-..||.+-. .-+....+++.+.++.-+...
T Consensus 93 G~EPSG~~FNsi~~Le~~~g~P~NP-------m-INAGAI~~~sll~g~~---~~~~~~~il~~~~~~ag~~l~------ 155 (319)
T PRK12356 93 GADPTGLPFNSVIAIELHGGKPLNP-------L-VNAGAIATTSLVPGAN---SDERWQRILDGQQRFAGRELA------ 155 (319)
T ss_pred CCCCCCCCcchHHHhhccCCCCCCc-------c-ccHHHHHHHHhccCCC---hHHHHHHHHHHHHHHhCCCCc------
Confidence 8899999999987544333322100 0 1112233333443311 112234566666665443333
Q ss_pred CCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccC
Q 044791 489 PPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLIST 568 (623)
Q Consensus 489 ~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~ 568 (623)
.|..+|.+=... +.- ..|+.+| |++.|.-++.. ...++.+.+...+......+...-.+|-.
T Consensus 156 --~de~v~~SE~~t----~~R--------NrAlA~~--lks~g~i~~d~--~~~Ld~Yf~qCsi~vt~~dLA~~~a~LAn 217 (319)
T PRK12356 156 --LSDEVYQSEQTT----NFH--------NRAIAWL--LYSYGRLYCDP--MEACDVYTRQCSTLVTARDLATMGATLAA 217 (319)
T ss_pred --cCHHHHHHHHhh----hHH--------HHHHHHH--HHHCCCCCCCH--HHHHHHHHHHhccceeHHHHHHHHHHHHc
Confidence 666666552221 111 3566665 88888765432 22233233333333444555544444432
Q ss_pred CCCCh-----------h-HHHhhHhhhcchhHHHHHHHHH
Q 044791 569 PARTP-----------L-RIIKNLRVCGDCHNAIKIMSRI 596 (623)
Q Consensus 569 m~~~~-----------~-~i~~~l~~~g~~~~a~~l~~~~ 596 (623)
.-..| . .+...+.-||-++.+-++..++
T Consensus 218 ~G~~P~tg~~vl~~~~~r~v~s~M~TCGmYd~SG~fa~~V 257 (319)
T PRK12356 218 GGVNPLTGKRVVDADNVPYILAEMTMEGLYERSGDWAYTV 257 (319)
T ss_pred CCcCCCCCCeecCHHHHHHHHHHHHHcCCccchhhHHHHh
Confidence 21111 1 2445568899999988887765
No 466
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=39.62 E-value=5.6e+02 Score=28.32 Aligned_cols=267 Identities=12% Similarity=0.151 Sum_probs=134.3
Q ss_pred CCCCCCC---CCCccccccccCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHH
Q 044791 188 GNQNFQQ---PRSPNQWNNQQNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKE 264 (623)
Q Consensus 188 ~~~~~~~---~~~p~~w~~~~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 264 (623)
|.+.||. ...|.-|.+..+|.++-...+.++- . .+-+ -... -.+=+.+.|-.|+++-
T Consensus 73 GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~g-a--~VN~-tT~T----------------NStPLraACfDG~lei 132 (615)
T KOG0508|consen 73 GSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRG-A--SVND-TTRT----------------NSTPLRAACFDGHLEI 132 (615)
T ss_pred ceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhc-C--cccc-cccc----------------CCccHHHHHhcchhHH
Confidence 4455665 4556689988889888886666632 1 0000 0000 0034677788899998
Q ss_pred HHHHHHcCCCCCHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHhh
Q 044791 265 AIELMDKGVKADAS---CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLN--NKVIEMYGKCGSMTDARRVFDHMA 339 (623)
Q Consensus 265 A~~l~~~~~~pd~~---ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y--~~Li~~y~k~g~~~~A~~lf~~m~ 339 (623)
.-.+++.|..|.+. --+.|+-+|. .|+.+ +.+.+.+.|..++..++ |+-+.-++..|.+|-..-++..-.
T Consensus 133 vKyLvE~gad~~IanrhGhTcLmIa~y-kGh~~----I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga 207 (615)
T KOG0508|consen 133 VKYLVEHGADPEIANRHGHTCLMIACY-KGHVD----IAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGA 207 (615)
T ss_pred HHHHHHcCCCCcccccCCCeeEEeeec-cCchH----HHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCc
Confidence 88888887766542 2333444433 34444 44455566777776665 788888899999887776665322
Q ss_pred cC--ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHh-hc---CCCC
Q 044791 340 DR--SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG-SADAIEEAFIHFESMKS-EF---GISP 412 (623)
Q Consensus 340 ~~--~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~-~~g~~e~A~~l~~~m~~-~~---g~~p 412 (623)
+. |..-.+-|+.+ ...|..+-...+...+... .--....-.+...|. +..|+-.|+..|.+..+ .+ ...+
T Consensus 208 ~i~~d~~GmtPL~~A-a~tG~~~iVe~L~~~~~sr--~~riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~ 284 (615)
T KOG0508|consen 208 KIDVDGHGMTPLLLA-AVTGHTDIVERLLQCETSR--ESRIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESIL 284 (615)
T ss_pred eeeecCCCCchHHHH-hhhcchHHHHHHhcCCcch--hhHHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhcccccc
Confidence 21 11111122221 2233333333333211000 000011111111121 12244455555443322 11 1122
Q ss_pred CccchhhHHHHHH--h-cCCHHHHHHHHHh--------------hCC-CCCCHHHHHHH-HHHHHHcCChhHHHHHHHHH
Q 044791 413 GTEHYLGLVGVLG--K-CGHLFEAQQFIEQ--------------KLP-FEPTAEFWEAL-RNYARIHGDIDLEDHAEELM 473 (623)
Q Consensus 413 ~~~ty~~Li~~~~--k-~g~~e~A~~lf~~--------------~m~-~~Pd~~ty~~L-i~a~~~~g~~~~A~~~~~~~ 473 (623)
..++. ..+.+|. + ....++.+++... +++ ..||+.-|-.. ...|+..|+++..+++|+..
T Consensus 285 e~e~~-~p~~ay~~~re~~~~~elE~lv~D~d~~RmqaLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyA 363 (615)
T KOG0508|consen 285 EKEPL-EPVLAYGYGREVNNREELEELVEDPDEMRMQALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYA 363 (615)
T ss_pred ccCCC-CchhhhhhhhhcCCHHHHHHHhcChHHHHHHHHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHH
Confidence 23333 3333443 2 2333333333222 222 33555333222 23588999999999999999
Q ss_pred HhcCCCCCCC
Q 044791 474 VDLDPSKADP 483 (623)
Q Consensus 474 ~~m~~~~~~~ 483 (623)
.+|..++..|
T Consensus 364 L~mqQk~l~P 373 (615)
T KOG0508|consen 364 LDMQQKNLEP 373 (615)
T ss_pred HHHHHhhcCC
Confidence 9999987764
No 467
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.46 E-value=6.8e+02 Score=30.12 Aligned_cols=112 Identities=15% Similarity=0.091 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCC--hH-----HHHHHHHHHHHcCCh--HHHHHHHHHHHHcCCCCCHHHHH--
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMADRS--MD-----SWHLMINGYADNGLG--DEGLQLFEQMRKLGLQPNEQTFL-- 382 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~~~--~~-----tyn~Li~~~~~~g~~--eeA~~l~~eM~~~g~~Pd~~ty~-- 382 (623)
-|..|+..|...|+.++|+++|.+....+ .. .+--+|.-+.+.+.. +-++++-....+....-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47788889999999999999998886533 11 344455555555544 34444333333221110000111
Q ss_pred ----------HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHh
Q 044791 383 ----------AVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGK 426 (623)
Q Consensus 383 ----------~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k 426 (623)
..+-.|......+-+..+++.+... .-..+....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~-~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISD-NRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHh-ccccchHHHHHHHHHHHH
Confidence 1123455666677777888888765 444566666777777765
No 468
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=39.39 E-value=7e+02 Score=33.29 Aligned_cols=114 Identities=12% Similarity=0.145 Sum_probs=84.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHH----hhcCChH--HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044791 317 KVIEMYGKCGSMTDARRVFDH----MADRSMD--SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS 390 (623)
Q Consensus 317 ~Li~~y~k~g~~~~A~~lf~~----m~~~~~~--tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~ 390 (623)
+|..+-.+++.+.+|+..|+. +++.+.. -|-.+...|...+++|....+...-.. .|+ ...-|.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence 556677889999999999998 4433332 566666699999999999888775221 222 2344556677
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCC-ccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 391 ADAIEEAFIHFESMKSEFGISPG-TEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 391 ~g~~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
.|++..|...|+.+. +..|+ ..+++-++......|.++.+.-..+.
T Consensus 1462 ~g~~~da~~Cye~~~---q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg 1508 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLI---QKDPDKEKHHSGVLKSMLAIQHLSTEILHLDG 1508 (2382)
T ss_pred hccHHHHHHHHHHhh---cCCCccccchhhHHHhhhcccchhHHHhhhcc
Confidence 899999999999998 66776 66788777777777787777776666
No 469
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=39.27 E-value=78 Score=22.98 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=27.5
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044791 286 LCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIE 320 (623)
Q Consensus 286 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~ 320 (623)
...+.|-++++..++++|.+.|+.-+...|..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34566778888889999988888888888877765
No 470
>KOG4592 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.54 E-value=71 Score=35.90 Aligned_cols=24 Identities=8% Similarity=0.080 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHH
Q 044791 312 LVLNNKVIEMYGKCGSMTDARRVF 335 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~~A~~lf 335 (623)
...+-+.++.+.+.|+.-.|.+..
T Consensus 416 g~~sL~nvdl~sk~~d~~~nse~~ 439 (728)
T KOG4592|consen 416 GSHSLSNVDLLSKHGDPYANSELL 439 (728)
T ss_pred cchhhhhhhhhcccchHHHHHHHH
Confidence 344445555555555554444443
No 471
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=38.20 E-value=1e+02 Score=27.65 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 361 EGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 361 eA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
|..+-+..+..-.+.|+....-..+++|.+.+++..|.++|+.++-+
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34444555566677888888888888888888888888888887754
No 472
>PHA02878 ankyrin repeat protein; Provisional
Probab=38.07 E-value=4.8e+02 Score=28.70 Aligned_cols=52 Identities=4% Similarity=-0.059 Sum_probs=29.5
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 044791 286 LCGNPKWYENAKKVHDYFLQSTIRGDLVL--NNKVIEMYGKCGSMTDARRVFDHMADR 341 (623)
Q Consensus 286 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~--y~~Li~~y~k~g~~~~A~~lf~~m~~~ 341 (623)
..++.|+.+-+..++ +.|..++... -.+-+...+..|..+.+..+++.....
T Consensus 43 ~A~~~g~~e~vk~Ll----~~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~ 96 (477)
T PHA02878 43 QAVEARNLDVVKSLL----TRGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKC 96 (477)
T ss_pred HHHHcCCHHHHHHHH----HCCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhcc
Confidence 345667776655554 4565443211 123444567788888887777765433
No 473
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=38.07 E-value=2.2e+02 Score=23.56 Aligned_cols=21 Identities=14% Similarity=0.295 Sum_probs=11.4
Q ss_pred HHHHHHcCCHHHHHHHHHHhh
Q 044791 319 IEMYGKCGSMTDARRVFDHMA 339 (623)
Q Consensus 319 i~~y~k~g~~~~A~~lf~~m~ 339 (623)
.......|+.++|+..+++..
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHH
Confidence 334445566666666665543
No 474
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=37.82 E-value=5.7e+02 Score=29.95 Aligned_cols=21 Identities=5% Similarity=-0.010 Sum_probs=12.4
Q ss_pred hHHHHHHhcCCHHHHHHHHHh
Q 044791 419 GLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 419 ~Li~~~~k~g~~e~A~~lf~~ 439 (623)
.+.++|.-..+.+.|.+++++
T Consensus 215 ~vc~c~v~Ldd~~~va~ll~k 235 (929)
T KOG2062|consen 215 SVCQCYVFLDDAEAVADLLEK 235 (929)
T ss_pred eeeeeeEEcCCHHHHHHHHHH
Confidence 445555556666666666665
No 475
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=37.80 E-value=2.2e+02 Score=24.59 Aligned_cols=26 Identities=19% Similarity=0.420 Sum_probs=15.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhc
Q 044791 315 NNKVIEMYGKCGSMTDARRVFDHMAD 340 (623)
Q Consensus 315 y~~Li~~y~k~g~~~~A~~lf~~m~~ 340 (623)
|..|+..|...|..++|++++.+...
T Consensus 42 ~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 42 YQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred HHHHHHHHHccCccHHHHHHHHHHhc
Confidence 55566666666666666666655544
No 476
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=37.60 E-value=2.2e+02 Score=23.73 Aligned_cols=59 Identities=10% Similarity=0.148 Sum_probs=40.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCC
Q 044791 296 AKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGL 358 (623)
Q Consensus 296 A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~ 358 (623)
...+++.+.+.|+- +..-+..+ .+...+.+++.++++.+..+|..+|..+..++...|.
T Consensus 22 ~~~v~~~L~~~gvl-t~~~~~~I---~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 22 LDELLIHLLQKDIL-TDSMAESI---MAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHHcCCC-CHHHHHHH---HcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 34567777777764 33333222 2344678899999999999999999999999876554
No 477
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=37.56 E-value=2.7e+02 Score=27.61 Aligned_cols=21 Identities=10% Similarity=-0.088 Sum_probs=10.7
Q ss_pred HHHHHhCCCCHHHHHHHHHHH
Q 044791 283 LFELCGNPKWYENAKKVHDYF 303 (623)
Q Consensus 283 Ll~~~~~~g~~~~A~~l~~~m 303 (623)
.|......|++++|++....+
T Consensus 70 ~Ir~~I~~G~Ie~Aie~in~l 90 (228)
T KOG2659|consen 70 QIRRAIEEGQIEEAIEKVNQL 90 (228)
T ss_pred HHHHHHHhccHHHHHHHHHHh
Confidence 334445555555555555444
No 478
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.63 E-value=1.4e+02 Score=29.88 Aligned_cols=57 Identities=14% Similarity=0.131 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcC---------ChHHHHHHHHHHHHcCChHHHHHHHHHH
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMADR---------SMDSWHLMINGYADNGLGDEGLQLFEQM 369 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---------~~~tyn~Li~~~~~~g~~eeA~~l~~eM 369 (623)
...--|...|.+.|++++|.++|+.+... ...+...|..++.+.|+.++.+.+--+|
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34446778888999999999999887321 1113344455555556666555544443
No 479
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=36.15 E-value=82 Score=24.25 Aligned_cols=46 Identities=17% Similarity=0.096 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
++++.++++.+... +=|-.-...+|.+|...|++++|.++++++..
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444455444432 11334445567777888888888877777664
No 480
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=36.04 E-value=3.2e+02 Score=24.43 Aligned_cols=61 Identities=16% Similarity=0.176 Sum_probs=31.2
Q ss_pred hhhHHHHHHhcCCHHH-------HHHHHHhhCCCCCCH-HHHHHHH----HHHHHcCChhHHHHHHHHHHhcC
Q 044791 417 YLGLVGVLGKCGHLFE-------AQQFIEQKLPFEPTA-EFWEALR----NYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 417 y~~Li~~~~k~g~~e~-------A~~lf~~~m~~~Pd~-~ty~~Li----~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
+..|-.++.+.|++++ |+.+|++-=++.-|. ..|-+.+ .++-..|+.++|...++...+|.
T Consensus 58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMi 130 (144)
T PF12968_consen 58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMI 130 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 4445555555555554 344454411233333 3343322 25667888888888888777763
No 481
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=35.74 E-value=5.8e+02 Score=30.27 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHc
Q 044791 248 PSVADLARLCQEGKVKEAIELMDK 271 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~ 271 (623)
..+.+|--+.|.|..+.|.+++++
T Consensus 327 P~W~~vyy~lR~G~lk~A~~~l~e 350 (835)
T KOG2168|consen 327 PLWPLVYYLLRCGDLKAASQFLNE 350 (835)
T ss_pred cchHHHHHHHhhhhHHHHHHHHHH
Confidence 344556666666666666666643
No 482
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=35.68 E-value=1.6e+02 Score=24.44 Aligned_cols=18 Identities=22% Similarity=0.108 Sum_probs=8.5
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 044791 388 CGSADAIEEAFIHFESMK 405 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~ 405 (623)
....|..++|...+++.+
T Consensus 51 ~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 334455555555544444
No 483
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=35.67 E-value=3.5e+02 Score=27.84 Aligned_cols=114 Identities=11% Similarity=0.066 Sum_probs=70.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLG 425 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~ 425 (623)
--.++..+.+.+...+.+..++.|+. ...-...|..+...|++..|++++.+.... +. ....|+++=+.-.
T Consensus 101 ~L~Il~~~rkr~~l~~ll~~L~~i~~------v~~~~~~l~~ll~~~dy~~Al~li~~~~~~--l~-~l~~~~c~~~L~~ 171 (291)
T PF10475_consen 101 GLEILRLQRKRQNLKKLLEKLEQIKT------VQQTQSRLQELLEEGDYPGALDLIEECQQL--LE-ELKGYSCVRHLSS 171 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--HH-hcccchHHHHHhH
Confidence 44455666677777777777777764 344556677788999999999999888753 11 2233333322222
Q ss_pred hcCCHHHHHHHHHhh-------CCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 044791 426 KCGHLFEAQQFIEQK-------LPFEPTAEFWEALRNYARIHGDIDLEDHAEELMV 474 (623)
Q Consensus 426 k~g~~e~A~~lf~~~-------m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~ 474 (623)
++++-....++. +-..=|...|..++.||...|+.. .+.+.+.
T Consensus 172 ---~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~---~~~dkl~ 221 (291)
T PF10475_consen 172 ---QLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQ---SAMDKLQ 221 (291)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhH---HHHHHHH
Confidence 233333333331 223568899999999999999876 4444443
No 484
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=35.30 E-value=95 Score=35.44 Aligned_cols=75 Identities=12% Similarity=-0.030 Sum_probs=53.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHH------HHHHHHHHHHhhcCCCCCccchhh
Q 044791 348 LMINGYADNGLGDEGLQLFEQMRKL--GLQPNEQTFLAVFSACGSADAIE------EAFIHFESMKSEFGISPGTEHYLG 419 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l~~eM~~~--g~~Pd~~ty~~li~a~~~~g~~e------~A~~l~~~m~~~~g~~p~~~ty~~ 419 (623)
+|+.+|..+|++..+..+++..... |-+.-...||..|+...+.|.++ .|.++++.. .+.-|..||..
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a----~ln~d~~t~al 108 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA----RLNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh----hcCCcchHHHH
Confidence 7889999999999999999988753 44445678888888888888754 333333332 35557778877
Q ss_pred HHHHHHh
Q 044791 420 LVGVLGK 426 (623)
Q Consensus 420 Li~~~~k 426 (623)
|+.+-..
T Consensus 109 l~~~sln 115 (1117)
T COG5108 109 LCQASLN 115 (1117)
T ss_pred HHHhhcC
Confidence 7766544
No 485
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=35.08 E-value=8.2e+02 Score=28.88 Aligned_cols=30 Identities=17% Similarity=0.103 Sum_probs=14.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044791 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVF 385 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li 385 (623)
.++.+.|+..+.+|++.|..|..+.-..++
T Consensus 271 gsD~daAl~~la~ml~~Gedp~~I~Rrl~~ 300 (725)
T PRK13341 271 GSDPDAALYWLARMVEAGEDPRFIFRRMLI 300 (725)
T ss_pred cCCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 345555555555555555554443333333
No 486
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=34.95 E-value=2.7e+02 Score=25.57 Aligned_cols=77 Identities=12% Similarity=0.106 Sum_probs=49.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHc-------CC--CCCHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044791 249 SVADLARLCQEGKVKEAIELMDK-------GV--KADASCFYTLFELCGNPKW-YENAKKVHDYFLQSTIRGDLVLNNKV 318 (623)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~l~~~-------~~--~pd~~ty~~Ll~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~~y~~L 318 (623)
+++++.-.+..+.+...+.+++. .+ ..|...|++++++.++... --.+..+|.-|++.+...+..-|..|
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34555555666666666666542 11 2344568888888866665 34566777777777777777778778
Q ss_pred HHHHHHc
Q 044791 319 IEMYGKC 325 (623)
Q Consensus 319 i~~y~k~ 325 (623)
|.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 7776654
No 487
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.72 E-value=4.2e+02 Score=32.63 Aligned_cols=122 Identities=13% Similarity=0.018 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhc------CCh-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH----HHH
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMAD------RSM-DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQ----TFL 382 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~------~~~-~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~----ty~ 382 (623)
-|-.+|..+-+.+-.|++..+-....+ +.+ .+++++.+-....|.+-+|...+-. .||.. +..
T Consensus 985 YYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLR 1058 (1480)
T KOG4521|consen 985 YYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLR 1058 (1480)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHH
Confidence 355666666666666666665444332 111 2677777777777777777665433 23322 233
Q ss_pred HHHHHHHhcCCHH------------HHHH-HHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHH-HHhhCC
Q 044791 383 AVFSACGSADAIE------------EAFI-HFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQF-IEQKLP 442 (623)
Q Consensus 383 ~li~a~~~~g~~e------------~A~~-l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~l-f~~~m~ 442 (623)
-++..++..|.++ +... +++...+. ........|+.|-.-+...+++.+|-.+ |+-+|.
T Consensus 1059 qlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs-~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamr 1131 (1480)
T KOG4521|consen 1059 QLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARS-SPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMR 1131 (1480)
T ss_pred HHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhc-CccccccHHHHHHHHHHhhcchhHHHHHHHHHHHH
Confidence 3444444444443 3333 22222211 1111233454444445667777776554 343554
No 488
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=34.42 E-value=4.6e+02 Score=28.26 Aligned_cols=127 Identities=13% Similarity=-0.063 Sum_probs=0.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhcCCCCCccchhhHH
Q 044791 348 LMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA------DAIEEAFIHFESMKSEFGISPGTEHYLGLV 421 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~------g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li 421 (623)
..+..+.+.+++..|.++|+++....+.++...+-.++..+|+. -++++|.+.++.+... ....-..+.+.-.
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~-~~~~~~~~~~~~~ 213 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPE-RLALYQVTSHDEL 213 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccch-hhhhhhhhhhhHH
Q ss_pred HHHHhcCCHHHHHHHH-----HhhCCCCCCH-HHHHHHHHHHH--HcCChhHHHHHHHHHHhc
Q 044791 422 GVLGKCGHLFEAQQFI-----EQKLPFEPTA-EFWEALRNYAR--IHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 422 ~~~~k~g~~e~A~~lf-----~~~m~~~Pd~-~ty~~Li~a~~--~~g~~~~A~~~~~~~~~m 476 (623)
....+....-.+...- .. -+..|.. .....+.++-. ..|+++.|..-+-++.||
T Consensus 214 ~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e~ 275 (380)
T TIGR02710 214 EDVIKRNASILPEIIGSRNGRRE-AKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALEL 275 (380)
T ss_pred HHHHHhHHhhcchhhhccchhhh-hcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
No 489
>PRK10941 hypothetical protein; Provisional
Probab=34.36 E-value=1.7e+02 Score=29.79 Aligned_cols=75 Identities=13% Similarity=-0.009 Sum_probs=0.0
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhH
Q 044791 418 LGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTA 496 (623)
Q Consensus 418 ~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~ 496 (623)
+.|-.+|.+.+++++|+.+.+.++.+.| |..-+.--.-.|...|....|..-++.+.+..|+. |+....
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~d----------p~a~~i 254 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPED----------PISEMI 254 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCc----------hhHHHH
Q ss_pred HHHhhh
Q 044791 497 ISILDG 502 (623)
Q Consensus 497 ~~li~~ 502 (623)
...|..
T Consensus 255 k~ql~~ 260 (269)
T PRK10941 255 RAQIHS 260 (269)
T ss_pred HHHHHH
No 490
>PRK02287 hypothetical protein; Provisional
Probab=34.21 E-value=1.8e+02 Score=27.56 Aligned_cols=70 Identities=11% Similarity=-0.040 Sum_probs=0.0
Q ss_pred cCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHHcCChhHHHHHHHHHHhcCC
Q 044791 408 FGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWE-ALRNYARIHGDIDLEDHAEELMVDLDP 478 (623)
Q Consensus 408 ~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~-~Li~a~~~~g~~~~A~~~~~~~~~m~~ 478 (623)
+|..--..+-.++..++.-.|..+.|.++++. .....+-...| .++..|.+..+.++..++.+.+.+...
T Consensus 101 YGkp~kLs~vEAlAaaLyI~G~~~~A~~ll~~-F~WG~~Fl~lN~elLe~Y~~~~~~~ev~~~q~~~~~~~~ 171 (171)
T PRK02287 101 YGKPFKLSSVEALAAALYILGFKEEAEKILSK-FKWGHTFLELNKEPLEAYARAKDSEEIVEIQKEYLGKIL 171 (171)
T ss_pred CCCcccccHHHHHHHHHHHcCCHHHHHHHHhh-CCChHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHhhcC
No 491
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=34.01 E-value=7.6e+02 Score=28.17 Aligned_cols=224 Identities=9% Similarity=-0.002 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHcCCCC--CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044791 245 VLPPSVADLARLCQEGKVKEAIELMDKGVKA--DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMY 322 (623)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~p--d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y 322 (623)
........|.-..+.=+.++-.+++++-... ....+..+++++...| -..|..+..++++.+-..+......|+.+.
T Consensus 344 ~~~~~f~~Lv~~lr~l~~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aG-T~~av~~i~~~I~~~~~~~~ea~~~l~~l~ 422 (618)
T PF01347_consen 344 ETLSKFSRLVRLLRTLSYEDLEELYKQLKSKSKKEQARKIFLDALPQAG-TNPAVKFIKDLIKSKKLTDDEAAQLLASLP 422 (618)
T ss_dssp THHHHHHHHHHHHTTS-HHHHHHHHHHHTTS---HHHHHHHHHHHHHH--SHHHHHHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q ss_pred HHc-CCHHHHHHHHHHhhcCChH------------HHHHHHHHHHHcC----------------ChHHHHHHHHHHHHcC
Q 044791 323 GKC-GSMTDARRVFDHMADRSMD------------SWHLMINGYADNG----------------LGDEGLQLFEQMRKLG 373 (623)
Q Consensus 323 ~k~-g~~~~A~~lf~~m~~~~~~------------tyn~Li~~~~~~g----------------~~eeA~~l~~eM~~~g 373 (623)
.-. .=-.+.++.+.+|.+...+ ++.+|+.-+|... -.+.....+.+....+
T Consensus 423 ~~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 502 (618)
T PF01347_consen 423 FHVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRG 502 (618)
T ss_dssp HT-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT
T ss_pred hhcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhcc
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHH--hcCCHHHHHHHHHh------------
Q 044791 374 LQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLG--KCGHLFEAQQFIEQ------------ 439 (623)
Q Consensus 374 ~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~--k~g~~e~A~~lf~~------------ 439 (623)
|...-...|.|++..|.. .+...+...... ....+...-...|.++. ..-..+++.+++-.
T Consensus 503 ---~~~~~~~~LkaLgN~g~~-~~i~~l~~~i~~-~~~~~~~~R~~Ai~Alr~~~~~~~~~v~~~l~~I~~n~~e~~EvR 577 (618)
T PF01347_consen 503 ---DEEEKIVYLKALGNLGHP-ESIPVLLPYIEG-KEEVPHFIRVAAIQALRRLAKHCPEKVREILLPIFMNTTEDPEVR 577 (618)
T ss_dssp ----HHHHHHHHHHHHHHT-G-GGHHHHHTTSTT-SS-S-HHHHHHHHHTTTTGGGT-HHHHHHHHHHHHH-TTS-HHHH
T ss_pred ---CHHHHHHHHHHhhccCCc-hhhHHHHhHhhh-ccccchHHHHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCChhHH
Q ss_pred ------hCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 044791 440 ------KLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMV 474 (623)
Q Consensus 440 ------~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~ 474 (623)
+|...|+...+..+........+...+-.++..++
T Consensus 578 iaA~~~lm~~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~Lk 618 (618)
T PF01347_consen 578 IAAYLILMRCNPSPSVLQRIAQSLWNEPSNQVASFVYSHLK 618 (618)
T ss_dssp HHHHHHHHHT---HHHHHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhhCchHHHHHHHHHhcC
No 492
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=33.86 E-value=51 Score=34.20 Aligned_cols=53 Identities=28% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCccccchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 044791 64 QPPQSPLSDSRAFPDQSNFNNNQWASQQEQNNHLSYPNQGHGYATNQYSSDRNYPNRGYPNQGQRLPIQGQA 135 (623)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 135 (623)
|+|-.||+..+. |-.-++...|..++..+ +|+|++ .|||| |+|+|...++..+
T Consensus 10 ~~p~~~pp~ar~-q~~~~~~~~~~~~~~~~-----ppP~~~-----------~~~~P--pPq~~~~~~~~~g 62 (362)
T KOG1546|consen 10 QRPMAPPPGARY-QCAGCHAVTQIAQPRIQ-----PPPQPS-----------SYPNP--PPQPPYQYPQMAG 62 (362)
T ss_pred CCCCCCCCCCcc-cccccceeeeecccCcC-----CCCCCC-----------CCCCC--CCCCCCCCccccc
No 493
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=33.82 E-value=7.9e+02 Score=29.95 Aligned_cols=171 Identities=9% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH--HHHHHH--
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDL-------VLNNKVIEMYGKCGSMTDARRVFDHMADRSMD--SWHLMI-- 350 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~--tyn~Li-- 350 (623)
..|+.+...+++.+|+.+ |++..+..|. .-.+.+=...-..++.+---.++..+.+.|+. .|....
T Consensus 699 ~~ir~~Ld~~~Y~~Af~~---~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~tmY~~~~~~ 775 (928)
T PF04762_consen 699 AGIRKLLDAKDYKEAFEL---CRKHRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTKTMYKDTYPP 775 (928)
T ss_pred HHHHHHHhhccHHHHHHH---HHHhccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhccccccccccccccccc
Q ss_pred ----------HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhhcCCCCCccchh
Q 044791 351 ----------NGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD--AIEEAFIHFESMKSEFGISPGTEHYL 418 (623)
Q Consensus 351 ----------~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g--~~e~A~~l~~~m~~~~g~~p~~~ty~ 418 (623)
......+++....+.+.+.++. ..-...-+..+|.+|++.+ ++|+|+.+..+++++
T Consensus 776 ~~~~~~~~~~~~~~~~~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~----------- 843 (928)
T PF04762_consen 776 SSEAQPNSNSSTASSESKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREE----------- 843 (928)
T ss_pred ccccccccccCCCccccHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhc-----------
Q ss_pred hHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHHH----------HHcCChhHHHHHHHHHHhcCC
Q 044791 419 GLVGVLGKCGHLFEAQQFIEQKLPFEPTA-EFWEALRNYA----------RIHGDIDLEDHAEELMVDLDP 478 (623)
Q Consensus 419 ~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ty~~Li~a~----------~~~g~~~~A~~~~~~~~~m~~ 478 (623)
+.+.|++.++. +-+--|+ ..|+.-+..| ....|..+-.-.++.+..|.+
T Consensus 844 ----------~~~~ae~alky-l~fLvDvn~Ly~~ALG~YDl~Lal~VAq~SQkDPKEYLPfL~~L~~l~~ 903 (928)
T PF04762_consen 844 ----------DPESAEEALKY-LCFLVDVNKLYDVALGTYDLELALMVAQQSQKDPKEYLPFLQELQKLPP 903 (928)
T ss_pred ----------ChHHHHHHHhH-heeeccHHHHHHHHhhhcCHHHHHHHHHHhccChHHHHHHHHHHHhCCh
No 494
>PF03276 Gag_spuma: Spumavirus gag protein; InterPro: IPR004957 The Spumavirus gag protein is a core viral polyprotein that undergoes specific enzymatic cleavages in vivo to yield the mature protein.; GO: 0019028 viral capsid
Probab=33.56 E-value=2.4e+02 Score=31.43 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCccccchhhhhhhhhcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 044791 60 TPPPQPPQSPLSDSRAFPDQSNFNNNQWASQQEQNNHLSYPNQGHGYATNQYSSDRNYPNRGYPNQGQRLPIQGQAYPQQ 139 (623)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 139 (623)
++.++...+.+...+.--.|..+..+++.+++++++-...++-+++-.+.++++.+. +. ....++..
T Consensus 436 r~~~~~~~~~p~s~~~GRGq~~~R~~pQ~~r~~~~qGR~s~q~~p~Q~n~s~sqnqr--qS-----------~~~n~~~~ 502 (582)
T PF03276_consen 436 RSRSQSSQQRPRSRGRGRGQGRRRSQPQSQRRQPNQGRQSPQPPPQQRNTSNSQNQR--QS-----------NSSNQGPQ 502 (582)
T ss_pred ccccCCCCCCCCccccCCCCCCCCCCCCccCCCcccCCCCCCCCccccccccccccc--cc-----------ccccCCcc
Q ss_pred CCCCCCCCCCCCCCccc---ccCCCCCCCCCCCCCCCCCCCCCCC
Q 044791 140 HQPGNHQYQNPSNNQEY---QRSNYQGQRSPNQGQVYPHQQQPHS 181 (623)
Q Consensus 140 ~~~~~~~~~~p~~~~~~---~~p~~~~~~~p~~~~~~~~~~~~~~ 181 (623)
.+....+.+.+..|+-+ ++.-|...|..+.++-...++++..
T Consensus 503 ~~~gYNLRPr~~QPQRYGGg~~~~~n~~P~r~~~~~~~~~~~~~~ 547 (582)
T PF03276_consen 503 GQGGYNLRPRPNQPQRYGGGPGRRWNDNPYRQSNQGRSQTQQPQP 547 (582)
T ss_pred CCCCCCCCCCCCCcccccCCCCCCCCCCccccccCCCCcccCCCc
No 495
>PHA02876 ankyrin repeat protein; Provisional
Probab=33.43 E-value=8.2e+02 Score=28.36 Aligned_cols=253 Identities=10% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHH--HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHH
Q 044791 249 SVADLARLCQEGKVKEAIELMDKGVKADASCFY--TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNN--KVIEMYGK 324 (623)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~--~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~--~Li~~y~k 324 (623)
...++....+.|..+-+.-+++.|..++...-. +-+...+..|+. ++++.+++.|..++..... +.+...+.
T Consensus 145 ~~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~----~iv~~LL~~Gad~n~~~~~g~t~L~~A~~ 220 (682)
T PHA02876 145 YMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNA----KMVNLLLSYGADVNIIALDDLSVLECAVD 220 (682)
T ss_pred hhHHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCH----HHHHHHHHCCCCcCccCCCCCCHHHHHHH
Q ss_pred cCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHH
Q 044791 325 CGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQT--FLAVFSACGSADAIEEAFIHFE 402 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~t--y~~li~a~~~~g~~e~A~~l~~ 402 (623)
.|+.+-+..+++ ...+...-...+...+..+..+.+.-+++ .|..++... -.+.+...+..|.+.+...++-
T Consensus 221 ~~~~~ivk~Ll~--~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~----~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl 294 (682)
T PHA02876 221 SKNIDTIKAIID--NRSNINKNDLSLLKAIRNEDLETSLLLYD----AGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLL 294 (682)
T ss_pred cCCHHHHHHHHh--cCCCCCCCcHHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHH
Q ss_pred HHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCC
Q 044791 403 SMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKAD 482 (623)
Q Consensus 403 ~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~ 482 (623)
+.-.. --..|..-.+.|..+.......+....++.....+........+.+...+..+... .+...+.+.+.+.-.
T Consensus 295 ~~gad-in~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~---~iv~lLl~~gadin~ 370 (682)
T PHA02876 295 ERGAD-VNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNK---DIVITLLELGANVNA 370 (682)
T ss_pred HCCCC-CCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcH---HHHHHHHHcCCCCcc
Q ss_pred CCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCc
Q 044791 483 PKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDT 536 (623)
Q Consensus 483 ~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~ 536 (623)
.|..-...+.-+..+.. .++++.+.+.|..++.
T Consensus 371 --------~d~~G~TpLh~Aa~~~~-------------~~iv~~Ll~~gad~~~ 403 (682)
T PHA02876 371 --------RDYCDKTPIHYAAVRNN-------------VVIINTLLDYGADIEA 403 (682)
T ss_pred --------CCCCCCCHHHHHHHcCC-------------HHHHHHHHHCCCCccc
No 496
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=32.95 E-value=6.5e+02 Score=27.09 Aligned_cols=125 Identities=9% Similarity=-0.130 Sum_probs=0.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc------CCHHHHHHHHHHhh-cCChHHHHHHHHHHH
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC------GSMTDARRVFDHMA-DRSMDSWHLMINGYA 354 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~------g~~~~A~~lf~~m~-~~~~~tyn~Li~~~~ 354 (623)
..+..+.+.+++..|.++|+++....+.++...+-.++..+|++ -+.++|.+.|+.+. ..+...|..+...+.
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~~~~ 214 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHDELE 214 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhhHHH
Q ss_pred HcCChHHHHHHHHHH-----HHcCCCCC-HHHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 044791 355 DNGLGDEGLQLFEQM-----RKLGLQPN-EQTFLAVFSACG--SADAIEEAFIHFESMKS 406 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM-----~~~g~~Pd-~~ty~~li~a~~--~~g~~e~A~~l~~~m~~ 406 (623)
..-+-.+.+.-..+- .+.+..|. ......+.+|-. ..|+++.|...+-+..+
T Consensus 215 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e 274 (380)
T TIGR02710 215 DVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALE 274 (380)
T ss_pred HHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
No 497
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=32.91 E-value=2.6e+02 Score=30.63 Aligned_cols=178 Identities=8% Similarity=-0.054 Sum_probs=0.0
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCC--
Q 044791 281 YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGL-- 358 (623)
Q Consensus 281 ~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~-- 358 (623)
|-++.-|...|+..+|.+..+++...-+. +...-.+|+.+....-.-.-.+.++.+-.+.+..+-+-+..++.+.+.
T Consensus 218 n~~l~eyv~~getrea~rciR~L~vsffh-he~vkralv~ame~~~ae~l~l~llke~~e~glissSq~~kGfsr~~~sl 296 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIRELGVSFFH-HEGVKRALVDAMEDALAEGLTLKLLKEGREEGLISSSQMGKGFSRKGGSL 296 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhCCCchh-hHHHHHHHHHHHhhhhcccceeccchhhhhhcchhhhccccCchhhcccc
Q ss_pred ------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHH
Q 044791 359 ------GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFE 432 (623)
Q Consensus 359 ------~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~ 432 (623)
.-.|...|+...-+.+.-+...=+++-..-...|+.+. ++.|++-... +|.-|...|+.-|
T Consensus 297 ddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk~~~~------------IIqEYFlsgDt~E 363 (645)
T KOG0403|consen 297 DDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKKDLTP------------IIQEYFLSGDTPE 363 (645)
T ss_pred ccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHHhhHH------------HHHHHHhcCChHH
Q ss_pred HHHHHHhhCC---CCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 044791 433 AQQFIEQKLP---FEPTAEFWEALRNYARIHGDIDLEDHAEELM 473 (623)
Q Consensus 433 A~~lf~~~m~---~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~ 473 (623)
..+.++. ++ .+|-...+-.-+..=.++...++|...+.-+
T Consensus 364 vi~~L~D-Ln~~E~~~~f~k~lITLAldrK~~ekEMasvllS~L 406 (645)
T KOG0403|consen 364 VIRSLRD-LNLPEYNPGFLKLLITLALDRKNSEKEMASVLLSDL 406 (645)
T ss_pred HHHHHHH-cCCccccchHHHHHHHHHhccchhHHHHHHHHHHHh
No 498
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=32.58 E-value=6.8e+02 Score=27.21 Aligned_cols=145 Identities=13% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHcCChHH--HHHHHHHHHHcC---CCCCHHHHHHHHHHHHhc---CCHHHHHHH
Q 044791 329 TDARRVFDHMADRSMDSWHLMINGYADNGLGDE--GLQLFEQMRKLG---LQPNEQTFLAVFSACGSA---DAIEEAFIH 400 (623)
Q Consensus 329 ~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~ee--A~~l~~eM~~~g---~~Pd~~ty~~li~a~~~~---g~~e~A~~l 400 (623)
++|++++-.+...|...--.++.......+.++ .++.+++..... ...+...+-.+|+|+-++ .+.+.|+..
T Consensus 192 ~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyy 271 (436)
T COG2256 192 EEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYY 271 (436)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHH
Q ss_pred HHHHHhhcCCCCCccchhhHHHHHHhcCC--------HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 044791 401 FESMKSEFGISPGTEHYLGLVGVLGKCGH--------LFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEEL 472 (623)
Q Consensus 401 ~~~m~~~~g~~p~~~ty~~Li~~~~k~g~--------~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~ 472 (623)
+.+|+.. |-+|....--.++-++-..|. .-.|...+++ ++..-......-.+-.++..-+-..+..+++.
T Consensus 272 lARmi~~-GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da~~~-lG~PE~~i~LAqavvyLA~aPKSNavY~A~~~ 349 (436)
T COG2256 272 LARMIEA-GEDPLYIARRLVRIASEDIGLADPNALQVAVAALDAVER-LGSPEARIALAQAVVYLALAPKSNAVYTAINA 349 (436)
T ss_pred HHHHHhc-CCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHhCCccHHHHHHHHH
Q ss_pred HHh
Q 044791 473 MVD 475 (623)
Q Consensus 473 ~~~ 475 (623)
...
T Consensus 350 A~~ 352 (436)
T COG2256 350 ALA 352 (436)
T ss_pred HHH
No 499
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=32.12 E-value=2.4e+02 Score=27.26 Aligned_cols=96 Identities=10% Similarity=0.009 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHH-HHHHcCC--HHHHHHHHHHhhcC---------
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQS--TIRGDLVLNNKVIE-MYGKCGS--MTDARRVFDHMADR--------- 341 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~~y~~Li~-~y~k~g~--~~~A~~lf~~m~~~--------- 341 (623)
+.+-++..+-.....|++++|.+-++++.+. .++.-...|..+.. +||..+. +.+|..+|.-+...
T Consensus 28 ei~r~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~~~ps~~EL~ 107 (204)
T COG2178 28 EIVRLSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDGRLPSPEELG 107 (204)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCCCHHHcC
Q ss_pred -----------ChH-HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044791 342 -----------SMD-SWHLMINGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 342 -----------~~~-tyn~Li~~~~~~g~~eeA~~l~~eM~~ 371 (623)
|.+ -..-..-...+.|++++|..+++-|.+
T Consensus 108 V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 108 VPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
No 500
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=31.83 E-value=4.6e+02 Score=27.16 Aligned_cols=152 Identities=12% Similarity=0.125 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHH
Q 044791 360 DEGLQLFEQMRKLG--------LQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLF 431 (623)
Q Consensus 360 eeA~~l~~eM~~~g--------~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e 431 (623)
+...-+|.-+-++| ++.|..-+|+|+.- +..++++--+-+++..+..|-.-....+-.+.+-||..++.+
T Consensus 55 ~~maplYkyL~E~~n~kt~a~~ikfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ 132 (412)
T COG5187 55 KCMAPLYKYLAEKGNPKTSASVIKFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQ 132 (412)
T ss_pred hhhhHHHHHHHhccCCcccchheehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhh
Q ss_pred HHHHHHHh----hCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccc
Q 044791 432 EAQQFIEQ----KLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLV 507 (623)
Q Consensus 432 ~A~~lf~~----~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~ 507 (623)
.+.++.++ +|...--...+-+.|+.-.--|+..-..+.++.+..|..+|.. =.+.-...+|..+.....|.-
T Consensus 133 ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgD----WeRrNRyK~Y~Gi~~m~~RnF 208 (412)
T COG5187 133 NGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGD----WERRNRYKVYKGIFKMMRRNF 208 (412)
T ss_pred hHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC----HHhhhhHHHHHHHHHHHHHhh
Q ss_pred cccCCcccchHHHHHHH-HHH
Q 044791 508 EFRNPTLYRDDEKLKAL-NQM 527 (623)
Q Consensus 508 ~~~~~~~~~~~eal~~~-~~M 527 (623)
. +|-.+| +.|
T Consensus 209 k----------eAa~Ll~d~l 219 (412)
T COG5187 209 K----------EAAILLSDIL 219 (412)
T ss_pred H----------HHHHHHHHHh
Done!