Query 044791
Match_columns 623
No_of_seqs 510 out of 3569
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 11:37:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044791.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044791hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 4.9E-29 1.7E-33 275.4 23.1 187 272-460 20-223 (501)
2 4g26_A Pentatricopeptide repea 100.0 1.1E-28 3.8E-33 272.6 21.7 180 247-427 27-223 (501)
3 2xpi_A Anaphase-promoting comp 99.9 1.4E-26 4.9E-31 259.2 22.8 272 200-477 86-437 (597)
4 2xpi_A Anaphase-promoting comp 99.9 5.3E-26 1.8E-30 254.5 19.2 321 245-598 199-578 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 5.1E-21 1.8E-25 202.7 24.9 342 205-599 11-368 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.8 9E-20 3.1E-24 193.1 22.3 313 205-569 45-365 (388)
7 2y4t_A DNAJ homolog subfamily 99.8 7.1E-18 2.4E-22 181.4 25.2 286 205-537 38-363 (450)
8 2y4t_A DNAJ homolog subfamily 99.8 6.3E-18 2.1E-22 181.8 23.8 297 244-568 24-354 (450)
9 3spa_A Mtrpol, DNA-directed RN 99.8 2.3E-19 8E-24 205.0 9.7 158 276-439 126-306 (1134)
10 2gw1_A Mitochondrial precursor 99.8 3.7E-17 1.3E-21 178.3 25.4 348 205-598 18-477 (514)
11 3spa_A Mtrpol, DNA-directed RN 99.8 5.6E-19 1.9E-23 201.9 10.4 149 311-461 126-286 (1134)
12 3fp2_A TPR repeat-containing p 99.7 3.2E-16 1.1E-20 172.3 23.3 350 205-599 37-491 (537)
13 2gw1_A Mitochondrial precursor 99.7 8.9E-16 3E-20 167.3 25.8 319 248-598 8-443 (514)
14 3mkr_A Coatomer subunit epsilo 99.7 1.1E-15 3.9E-20 156.6 24.0 252 205-480 11-268 (291)
15 1fch_A Peroxisomal targeting s 99.7 9.6E-16 3.3E-20 159.9 23.6 291 206-524 38-353 (368)
16 4eqf_A PEX5-related protein; a 99.7 6.7E-16 2.3E-20 161.6 22.3 262 245-509 64-343 (365)
17 3ieg_A DNAJ homolog subfamily 99.7 3E-15 1E-19 154.5 26.0 293 248-568 5-331 (359)
18 3ieg_A DNAJ homolog subfamily 99.7 7.5E-15 2.6E-19 151.5 27.7 285 205-536 15-339 (359)
19 3hym_B Cell division cycle pro 99.7 6.8E-15 2.3E-19 150.4 26.4 254 205-479 34-302 (330)
20 1fch_A Peroxisomal targeting s 99.7 5.8E-16 2E-20 161.6 17.4 253 255-529 34-313 (368)
21 3hym_B Cell division cycle pro 99.7 6.8E-15 2.3E-19 150.4 24.7 264 246-536 22-303 (330)
22 1b89_A Protein (clathrin heavy 99.7 6E-17 2E-21 172.9 7.9 284 205-565 15-304 (449)
23 4eqf_A PEX5-related protein; a 99.6 2.7E-15 9.3E-20 157.0 17.9 233 276-529 64-309 (365)
24 3cv0_A Peroxisome targeting si 99.6 1.8E-14 6E-19 147.1 21.7 267 247-525 22-310 (327)
25 3fp2_A TPR repeat-containing p 99.6 1.3E-14 4.4E-19 159.4 21.7 326 196-568 57-487 (537)
26 3cv0_A Peroxisome targeting si 99.6 3.2E-14 1.1E-18 145.1 20.4 248 205-475 33-314 (327)
27 3mkr_A Coatomer subunit epsilo 99.6 2E-13 6.9E-18 139.8 22.4 267 253-564 6-286 (291)
28 1b89_A Protein (clathrin heavy 99.6 2.5E-15 8.5E-20 160.4 7.1 251 258-568 15-268 (449)
29 1xnf_A Lipoprotein NLPI; TPR, 99.5 3.6E-13 1.2E-17 134.0 20.2 216 258-479 17-247 (275)
30 3uq3_A Heat shock protein STI1 99.5 3.4E-13 1.2E-17 132.5 19.7 222 248-477 7-237 (258)
31 3uq3_A Heat shock protein STI1 99.5 4.2E-13 1.4E-17 131.9 19.5 218 277-528 5-234 (258)
32 2ho1_A Type 4 fimbrial biogene 99.5 1.7E-12 5.8E-17 127.9 23.4 200 277-479 37-241 (252)
33 1ouv_A Conserved hypothetical 99.5 5.7E-12 1.9E-16 126.4 26.5 222 247-479 7-254 (273)
34 2vq2_A PILW, putative fimbrial 99.5 2.4E-12 8.2E-17 123.6 22.7 200 277-479 8-214 (225)
35 2pl2_A Hypothetical conserved 99.5 8E-13 2.8E-17 128.8 18.8 187 247-439 6-210 (217)
36 1xnf_A Lipoprotein NLPI; TPR, 99.5 6E-13 2.1E-17 132.4 17.6 243 205-470 17-269 (275)
37 2pl2_A Hypothetical conserved 99.5 1.9E-12 6.5E-17 126.1 20.3 194 275-474 3-212 (217)
38 2ho1_A Type 4 fimbrial biogene 99.5 5.8E-12 2E-16 124.0 23.4 200 248-451 39-246 (252)
39 2q7f_A YRRB protein; TPR, prot 99.5 2E-12 6.9E-17 126.1 18.7 201 276-480 22-226 (243)
40 2vq2_A PILW, putative fimbrial 99.5 1.2E-11 4E-16 118.7 23.2 204 247-453 9-221 (225)
41 3u4t_A TPR repeat-containing p 99.4 5E-12 1.7E-16 125.8 19.0 228 249-480 6-254 (272)
42 2q7f_A YRRB protein; TPR, prot 99.4 3.9E-12 1.3E-16 124.0 17.1 202 247-452 24-232 (243)
43 2h6f_A Protein farnesyltransfe 99.4 1.5E-11 5.2E-16 130.8 21.0 228 246-479 97-351 (382)
44 4a1s_A PINS, partner of inscut 99.4 1.5E-12 5.2E-17 138.0 12.6 265 250-528 52-370 (411)
45 1ouv_A Conserved hypothetical 99.4 2.1E-10 7.1E-15 114.9 27.1 223 276-531 5-252 (273)
46 3sf4_A G-protein-signaling mod 99.4 5.4E-12 1.9E-16 132.6 16.0 268 247-528 10-334 (406)
47 3u4t_A TPR repeat-containing p 99.4 2.6E-11 9E-16 120.5 19.9 240 278-536 4-254 (272)
48 3ro2_A PINS homolog, G-protein 99.4 2.3E-12 7.9E-17 130.9 12.2 265 251-529 10-331 (338)
49 2h6f_A Protein farnesyltransfe 99.4 1E-11 3.5E-16 132.1 17.6 233 277-527 97-344 (382)
50 4a1s_A PINS, partner of inscut 99.4 1.9E-12 6.3E-17 137.3 11.1 259 205-478 60-374 (411)
51 1xi4_A Clathrin heavy chain; a 99.3 2.4E-10 8.2E-15 134.9 29.2 272 205-524 1061-1339(1630)
52 3vtx_A MAMA; tetratricopeptide 99.3 4E-11 1.4E-15 112.5 18.3 167 276-447 4-174 (184)
53 1xi4_A Clathrin heavy chain; a 99.3 2.1E-10 7.3E-15 135.4 28.1 297 252-591 1055-1376(1630)
54 2xm6_A Protein corresponding t 99.3 1.5E-09 5.3E-14 118.7 33.7 334 206-600 56-433 (490)
55 3ro2_A PINS homolog, G-protein 99.3 7.8E-12 2.7E-16 126.9 14.2 260 205-479 17-335 (338)
56 3nf1_A KLC 1, kinesin light ch 99.3 2.1E-11 7.2E-16 123.1 16.2 235 245-479 26-310 (311)
57 3sf4_A G-protein-signaling mod 99.3 7.7E-12 2.6E-16 131.5 13.1 259 205-478 21-338 (406)
58 4g1t_A Interferon-induced prot 99.3 1.3E-10 4.3E-15 125.7 23.1 266 246-534 51-367 (472)
59 3vtx_A MAMA; tetratricopeptide 99.3 1.4E-10 4.8E-15 108.7 19.5 166 311-479 4-173 (184)
60 2xm6_A Protein corresponding t 99.3 3.3E-09 1.1E-13 116.0 33.2 311 247-600 40-397 (490)
61 4g1t_A Interferon-induced prot 99.3 6.3E-11 2.2E-15 128.0 18.9 353 205-604 63-464 (472)
62 2ond_A Cleavage stimulation fa 99.3 6.4E-10 2.2E-14 114.0 23.9 216 263-481 33-275 (308)
63 4abn_A Tetratricopeptide repea 99.3 7E-11 2.4E-15 129.3 17.1 204 261-469 83-314 (474)
64 2ooe_A Cleavage stimulation fa 99.2 1.3E-09 4.4E-14 120.5 26.7 127 195-340 10-158 (530)
65 3ulq_A Response regulator aspa 99.2 2.5E-10 8.5E-15 120.5 19.8 228 252-480 109-372 (383)
66 3nf1_A KLC 1, kinesin light ch 99.2 3.8E-11 1.3E-15 121.2 12.3 195 246-442 69-306 (311)
67 4abn_A Tetratricopeptide repea 99.2 5.6E-11 1.9E-15 130.1 14.2 206 293-524 84-315 (474)
68 1qqe_A Vesicular transport pro 99.2 2.9E-10 9.9E-15 115.9 18.2 190 253-445 44-271 (292)
69 2ond_A Cleavage stimulation fa 99.2 7.7E-10 2.6E-14 113.4 20.1 215 210-446 33-273 (308)
70 3as5_A MAMA; tetratricopeptide 99.2 2.5E-09 8.7E-14 98.6 20.4 157 248-406 10-172 (186)
71 3as5_A MAMA; tetratricopeptide 99.2 1E-09 3.6E-14 101.2 17.4 164 313-479 9-176 (186)
72 3q15_A PSP28, response regulat 99.2 3.5E-09 1.2E-13 111.6 23.6 221 254-476 109-365 (378)
73 4gyw_A UDP-N-acetylglucosamine 99.1 5.1E-10 1.7E-14 128.5 17.9 161 312-477 9-175 (723)
74 1hz4_A MALT regulatory protein 99.1 1.5E-08 5.2E-13 105.9 26.8 262 252-528 20-320 (373)
75 4i17_A Hypothetical protein; T 99.1 2.6E-09 8.9E-14 103.7 18.9 140 247-389 8-164 (228)
76 1qqe_A Vesicular transport pro 99.1 1.5E-09 5E-14 110.6 17.7 202 261-475 32-265 (292)
77 4i17_A Hypothetical protein; T 99.1 3.7E-09 1.3E-13 102.6 19.5 195 275-480 5-213 (228)
78 3edt_B KLC 2, kinesin light ch 99.1 4.1E-10 1.4E-14 111.5 12.1 199 277-476 43-281 (283)
79 1hz4_A MALT regulatory protein 99.1 6.6E-09 2.3E-13 108.7 21.5 257 205-476 26-322 (373)
80 4gyw_A UDP-N-acetylglucosamine 99.1 1.8E-09 6E-14 124.0 18.2 157 277-439 9-170 (723)
81 3edt_B KLC 2, kinesin light ch 99.1 1.5E-09 5E-14 107.5 14.8 195 245-442 42-280 (283)
82 3ulq_A Response regulator aspa 99.1 2.2E-09 7.4E-14 113.2 16.1 220 205-441 115-366 (383)
83 3q15_A PSP28, response regulat 99.0 7.4E-09 2.5E-13 109.1 17.7 220 205-441 113-363 (378)
84 2ifu_A Gamma-SNAP; membrane fu 98.9 2.8E-09 9.4E-14 109.4 11.7 196 259-468 29-253 (307)
85 2ooe_A Cleavage stimulation fa 98.9 2.1E-08 7.2E-13 110.7 19.5 214 263-479 255-495 (530)
86 2fo7_A Synthetic consensus TPR 98.9 3E-08 1E-12 85.8 14.8 124 280-405 4-130 (136)
87 2fo7_A Synthetic consensus TPR 98.9 7.7E-08 2.6E-12 83.2 17.1 126 314-442 3-131 (136)
88 3e4b_A ALGK; tetratricopeptide 98.9 7.3E-08 2.5E-12 104.6 20.4 241 205-474 15-314 (452)
89 3urz_A Uncharacterized protein 98.8 8.1E-08 2.8E-12 92.4 17.3 134 317-455 59-198 (208)
90 2pzi_A Probable serine/threoni 98.8 5.6E-08 1.9E-12 111.2 18.5 185 288-478 402-604 (681)
91 3mv2_B Coatomer subunit epsilo 98.8 9.4E-08 3.2E-12 97.7 17.6 213 251-481 50-287 (310)
92 3qky_A Outer membrane assembly 98.8 1.3E-07 4.4E-12 93.8 18.0 182 277-480 15-228 (261)
93 3qky_A Outer membrane assembly 98.8 5.6E-08 1.9E-12 96.5 15.3 185 244-446 13-227 (261)
94 2ifu_A Gamma-SNAP; membrane fu 98.8 6.1E-08 2.1E-12 99.3 15.7 219 206-435 4-253 (307)
95 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.7E-07 9.4E-12 89.7 17.9 185 277-481 4-218 (225)
96 3urz_A Uncharacterized protein 98.7 1.5E-07 5.3E-12 90.4 15.7 129 347-479 58-189 (208)
97 2pzi_A Probable serine/threoni 98.7 1E-07 3.4E-12 109.0 16.4 177 257-439 402-601 (681)
98 1hh8_A P67PHOX, NCF-2, neutrop 98.7 6.4E-07 2.2E-11 85.3 18.7 124 249-373 9-151 (213)
99 3mv2_B Coatomer subunit epsilo 98.7 2.2E-07 7.6E-12 94.9 16.0 190 250-447 74-286 (310)
100 3qou_A Protein YBBN; thioredox 98.7 2.9E-07 9.8E-12 93.4 16.7 171 267-439 107-280 (287)
101 3rjv_A Putative SEL1 repeat pr 98.7 6.8E-07 2.3E-11 86.3 18.2 172 295-476 4-197 (212)
102 4ga2_A E3 SUMO-protein ligase 98.7 3.3E-08 1.1E-12 90.2 7.9 140 318-461 3-148 (150)
103 1hh8_A P67PHOX, NCF-2, neutrop 98.7 5.1E-07 1.7E-11 86.0 16.7 134 313-447 7-154 (213)
104 2r5s_A Uncharacterized protein 98.7 1.6E-07 5.5E-12 87.5 12.5 57 282-339 11-67 (176)
105 3gw4_A Uncharacterized protein 98.6 1.2E-06 4E-11 82.4 17.9 150 289-439 4-172 (203)
106 3e4b_A ALGK; tetratricopeptide 98.6 5.8E-06 2E-10 89.5 25.4 215 251-476 146-387 (452)
107 2r5s_A Uncharacterized protein 98.6 4.2E-07 1.4E-11 84.6 14.2 157 248-406 8-172 (176)
108 3dra_A Protein farnesyltransfe 98.6 3.2E-06 1.1E-10 86.7 21.9 218 256-478 42-290 (306)
109 3qou_A Protein YBBN; thioredox 98.6 2.4E-07 8.4E-12 93.9 12.8 161 309-474 114-282 (287)
110 3u3w_A Transcriptional activat 98.6 1.8E-06 6.2E-11 87.3 19.2 202 266-476 34-266 (293)
111 2yhc_A BAMD, UPF0169 lipoprote 98.6 9.9E-07 3.4E-11 85.7 16.3 95 247-341 5-125 (225)
112 3u3w_A Transcriptional activat 98.6 2.2E-06 7.4E-11 86.7 19.0 154 252-405 81-264 (293)
113 2qfc_A PLCR protein; TPR, HTH, 98.6 7.8E-07 2.7E-11 90.1 15.5 161 314-474 77-264 (293)
114 2vsy_A XCC0866; transferase, g 98.6 5.2E-07 1.8E-11 100.4 15.2 145 260-406 3-156 (568)
115 2qfc_A PLCR protein; TPR, HTH, 98.6 2.9E-06 1E-10 85.8 19.5 161 279-439 77-262 (293)
116 4ga2_A E3 SUMO-protein ligase 98.5 4.3E-07 1.5E-11 82.6 11.5 136 254-392 5-148 (150)
117 2vsy_A XCC0866; transferase, g 98.5 7.6E-07 2.6E-11 99.1 15.8 159 290-453 2-168 (568)
118 3gw4_A Uncharacterized protein 98.5 8.8E-07 3E-11 83.3 14.0 151 256-406 2-175 (203)
119 4e6h_A MRNA 3'-END-processing 98.5 5.2E-06 1.8E-10 94.3 20.4 212 265-480 328-574 (679)
120 3dra_A Protein farnesyltransfe 98.5 1.4E-05 4.8E-10 81.9 21.4 223 286-529 42-286 (306)
121 3rjv_A Putative SEL1 repeat pr 98.4 1.1E-05 3.7E-10 77.7 19.1 149 251-405 23-195 (212)
122 3q7a_A Farnesyltransferase alp 98.4 4E-05 1.4E-09 79.6 23.7 212 259-475 67-330 (349)
123 1a17_A Serine/threonine protei 98.4 9.5E-06 3.3E-10 73.2 16.7 126 278-405 14-144 (166)
124 1a17_A Serine/threonine protei 98.4 4.7E-06 1.6E-10 75.3 14.5 91 314-405 15-108 (166)
125 1na0_A Designed protein CTPR3; 98.4 1.5E-05 5.1E-10 67.7 16.0 94 278-372 10-106 (125)
126 2e2e_A Formate-dependent nitri 98.4 4.1E-06 1.4E-10 77.4 13.1 115 289-405 22-142 (177)
127 4gco_A Protein STI-1; structur 98.3 2.7E-06 9.3E-11 74.9 11.2 92 313-405 14-108 (126)
128 2c2l_A CHIP, carboxy terminus 98.3 3E-06 1E-10 85.6 12.4 193 276-478 3-201 (281)
129 1na0_A Designed protein CTPR3; 98.3 8.5E-06 2.9E-10 69.2 13.0 93 312-405 9-104 (125)
130 3dss_A Geranylgeranyl transfer 98.3 3E-05 1E-09 80.1 18.7 222 252-479 35-307 (331)
131 3gyz_A Chaperone protein IPGC; 98.3 1.6E-06 5.3E-11 79.4 8.1 99 345-447 38-137 (151)
132 4b4t_Q 26S proteasome regulato 98.3 4.6E-05 1.6E-09 80.7 20.9 265 205-472 16-320 (434)
133 2vyi_A SGTA protein; chaperone 98.3 1.6E-05 5.6E-10 68.1 14.3 113 278-392 13-128 (131)
134 4f3v_A ESX-1 secretion system 98.3 1.1E-06 3.7E-11 88.7 7.2 126 280-407 105-237 (282)
135 3gyz_A Chaperone protein IPGC; 98.3 4.6E-06 1.6E-10 76.2 10.7 99 378-479 36-136 (151)
136 4gco_A Protein STI-1; structur 98.3 2.1E-05 7.1E-10 69.1 14.7 104 278-384 14-121 (126)
137 2vyi_A SGTA protein; chaperone 98.2 1.1E-05 3.7E-10 69.2 12.6 114 345-462 14-129 (131)
138 1p5q_A FKBP52, FK506-binding p 98.2 1.6E-05 5.5E-10 82.4 15.8 147 259-406 126-293 (336)
139 4f3v_A ESX-1 secretion system 98.2 1.6E-05 5.4E-10 80.2 14.4 186 289-479 18-240 (282)
140 2lni_A Stress-induced-phosphop 98.2 2E-05 6.7E-10 68.1 13.4 57 280-337 19-75 (133)
141 4gcn_A Protein STI-1; structur 98.2 7.2E-06 2.5E-10 72.1 10.3 102 345-447 10-116 (127)
142 3q7a_A Farnesyltransferase alp 98.2 0.00012 4.2E-09 76.0 20.6 232 282-528 59-329 (349)
143 2vgx_A Chaperone SYCD; alterna 98.2 4.4E-06 1.5E-10 75.7 8.6 92 313-405 22-116 (148)
144 4gcn_A Protein STI-1; structur 98.2 3.7E-05 1.3E-09 67.5 14.3 94 278-372 9-112 (127)
145 1p5q_A FKBP52, FK506-binding p 98.2 1.2E-05 4.2E-10 83.3 12.8 119 311-433 146-283 (336)
146 2vgx_A Chaperone SYCD; alterna 98.1 1.1E-05 3.7E-10 73.1 10.7 94 278-372 22-118 (148)
147 3ro3_A PINS homolog, G-protein 98.1 2E-05 6.9E-10 70.0 12.4 26 345-370 51-76 (164)
148 2lni_A Stress-induced-phosphop 98.1 5.9E-05 2E-09 65.0 15.1 113 244-357 14-132 (133)
149 2fbn_A 70 kDa peptidylprolyl i 98.1 2.5E-06 8.5E-11 80.8 6.6 145 317-464 9-173 (198)
150 2c2l_A CHIP, carboxy terminus 98.1 4.9E-06 1.7E-10 84.0 9.0 184 247-440 5-196 (281)
151 4b4t_Q 26S proteasome regulato 98.1 1.6E-05 5.4E-10 84.3 13.2 189 252-440 10-242 (434)
152 3ro3_A PINS homolog, G-protein 98.1 1.7E-05 5.9E-10 70.5 11.4 129 278-406 10-157 (164)
153 3dss_A Geranylgeranyl transfer 98.1 0.00027 9.4E-09 72.9 21.6 188 289-480 41-271 (331)
154 2e2e_A Formate-dependent nitri 98.1 8.5E-06 2.9E-10 75.3 9.2 121 323-447 21-148 (177)
155 2fbn_A 70 kDa peptidylprolyl i 98.1 9.3E-06 3.2E-10 76.7 9.6 145 253-398 11-176 (198)
156 3upv_A Heat shock protein STI1 98.1 7.3E-05 2.5E-09 64.7 14.7 94 278-372 5-101 (126)
157 3sz7_A HSC70 cochaperone (SGT) 98.1 5E-05 1.7E-09 69.2 13.9 92 279-371 13-107 (164)
158 1elr_A TPR2A-domain of HOP; HO 98.1 3.9E-05 1.3E-09 65.7 12.4 104 278-384 5-118 (131)
159 3upv_A Heat shock protein STI1 98.1 3.1E-05 1.1E-09 67.1 11.5 92 346-441 7-99 (126)
160 1elr_A TPR2A-domain of HOP; HO 98.0 2.8E-05 9.4E-10 66.7 10.5 103 346-449 7-114 (131)
161 3sz7_A HSC70 cochaperone (SGT) 98.0 9.7E-05 3.3E-09 67.3 14.1 96 311-407 10-108 (164)
162 1elw_A TPR1-domain of HOP; HOP 98.0 0.00012 4E-09 61.4 13.5 96 346-445 7-103 (118)
163 1elw_A TPR1-domain of HOP; HOP 98.0 0.00026 8.8E-09 59.2 15.5 92 279-371 6-100 (118)
164 2dba_A Smooth muscle cell asso 98.0 0.00026 8.8E-09 62.2 16.0 95 276-372 27-128 (148)
165 3q49_B STIP1 homology and U bo 98.0 0.00014 4.9E-09 63.3 14.2 93 277-370 9-104 (137)
166 4e6h_A MRNA 3'-END-processing 98.0 0.00019 6.4E-09 81.5 18.4 216 296-530 328-570 (679)
167 2xcb_A PCRH, regulatory protei 98.0 0.0001 3.4E-09 65.7 13.0 91 280-371 21-114 (142)
168 2kck_A TPR repeat; tetratricop 97.9 6E-05 2.1E-09 62.7 10.4 91 315-405 9-104 (112)
169 3q49_B STIP1 homology and U bo 97.9 0.00025 8.5E-09 61.8 14.6 95 311-406 8-105 (137)
170 2xcb_A PCRH, regulatory protei 97.9 0.00015 5E-09 64.6 13.2 94 312-406 18-114 (142)
171 1hxi_A PEX5, peroxisome target 97.9 4.2E-05 1.4E-09 66.6 9.0 87 318-405 23-112 (121)
172 1wao_1 Serine/threonine protei 97.9 7.2E-05 2.5E-09 81.5 12.9 120 281-402 10-134 (477)
173 2uy1_A Cleavage stimulation fa 97.9 0.00072 2.5E-08 73.9 20.4 197 360-597 196-411 (493)
174 2kck_A TPR repeat; tetratricop 97.8 4.5E-05 1.5E-09 63.4 8.3 95 345-440 8-103 (112)
175 1wao_1 Serine/threonine protei 97.8 2.9E-05 9.8E-10 84.7 8.7 119 316-438 10-134 (477)
176 2dba_A Smooth muscle cell asso 97.8 0.00013 4.3E-09 64.3 11.4 99 342-445 27-130 (148)
177 3n71_A Histone lysine methyltr 97.8 7E-05 2.4E-09 81.8 11.0 121 287-407 319-464 (490)
178 3n71_A Histone lysine methyltr 97.8 0.00013 4.5E-09 79.6 12.9 116 324-439 321-460 (490)
179 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00011 3.7E-09 79.6 11.7 119 312-434 268-405 (457)
180 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00042 1.4E-08 75.0 16.0 144 260-405 248-413 (457)
181 1hxi_A PEX5, peroxisome target 97.7 0.00023 7.7E-09 61.8 11.3 86 284-370 24-112 (121)
182 2xev_A YBGF; tetratricopeptide 97.7 0.00023 7.7E-09 61.3 10.8 86 351-439 10-101 (129)
183 1dce_A Protein (RAB geranylger 97.7 0.00046 1.6E-08 76.8 15.6 169 291-464 43-243 (567)
184 3k9i_A BH0479 protein; putativ 97.7 9.6E-05 3.3E-09 63.4 8.0 82 290-371 3-89 (117)
185 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00012 4.1E-09 75.9 9.7 150 277-445 179-330 (338)
186 2if4_A ATFKBP42; FKBP-like, al 97.7 6.8E-05 2.3E-09 77.8 7.7 151 312-480 179-332 (338)
187 1ihg_A Cyclophilin 40; ppiase 97.6 0.00029 1E-08 74.0 12.2 111 278-405 224-334 (370)
188 3rkv_A Putative peptidylprolyl 97.6 0.00053 1.8E-08 62.1 12.5 95 278-372 12-126 (162)
189 3rkv_A Putative peptidylprolyl 97.6 0.00047 1.6E-08 62.5 12.1 93 312-405 11-124 (162)
190 2xev_A YBGF; tetratricopeptide 97.6 0.00027 9.3E-09 60.8 9.9 95 382-479 6-108 (129)
191 3k9i_A BH0479 protein; putativ 97.6 0.0001 3.4E-09 63.3 6.9 99 325-424 3-107 (117)
192 2hr2_A Hypothetical protein; a 97.6 0.0004 1.4E-08 63.6 10.7 61 345-405 59-129 (159)
193 1ihg_A Cyclophilin 40; ppiase 97.6 0.0005 1.7E-08 72.2 12.9 132 249-398 226-361 (370)
194 2hr2_A Hypothetical protein; a 97.6 0.00054 1.8E-08 62.8 11.3 98 345-442 13-130 (159)
195 1dce_A Protein (RAB geranylger 97.4 0.0039 1.3E-07 69.3 17.7 153 326-482 43-227 (567)
196 2uy1_A Cleavage stimulation fa 97.3 0.01 3.5E-07 64.6 19.5 198 264-475 197-412 (493)
197 1klx_A Cysteine rich protein B 97.3 0.0054 1.8E-07 54.4 14.0 107 292-406 10-125 (138)
198 2l6j_A TPR repeat-containing p 97.2 0.00036 1.2E-08 58.1 5.3 88 277-365 4-100 (111)
199 1klx_A Cysteine rich protein B 97.2 0.00092 3.2E-08 59.5 7.9 111 259-374 8-128 (138)
200 2kat_A Uncharacterized protein 97.1 0.002 6.9E-08 54.5 9.0 76 295-371 3-81 (115)
201 2l6j_A TPR repeat-containing p 97.0 0.0013 4.6E-08 54.6 7.2 65 379-446 5-70 (111)
202 3qww_A SET and MYND domain-con 97.0 0.0031 1.1E-07 67.6 11.0 81 290-370 311-409 (433)
203 3mkq_A Coatomer beta'-subunit; 96.9 0.016 5.3E-07 66.4 17.6 156 254-442 607-763 (814)
204 2kat_A Uncharacterized protein 96.9 0.0019 6.5E-08 54.6 7.4 76 330-406 3-81 (115)
205 1zu2_A Mitochondrial import re 96.9 0.00056 1.9E-08 62.5 3.7 97 356-456 15-133 (158)
206 1na3_A Designed protein CTPR2; 96.8 0.012 4E-07 46.7 10.9 58 314-371 11-71 (91)
207 1na3_A Designed protein CTPR2; 96.8 0.011 3.7E-07 46.9 10.7 79 277-356 9-90 (91)
208 3qwp_A SET and MYND domain-con 96.7 0.0082 2.8E-07 64.2 12.2 61 345-405 331-398 (429)
209 3ma5_A Tetratricopeptide repea 96.7 0.011 3.9E-07 48.7 10.2 62 277-339 7-68 (100)
210 3ma5_A Tetratricopeptide repea 96.7 0.0048 1.7E-07 51.1 7.7 61 311-371 6-69 (100)
211 3qww_A SET and MYND domain-con 96.6 0.0043 1.5E-07 66.5 9.1 83 324-406 310-410 (433)
212 1zu2_A Mitochondrial import re 96.6 0.0029 1E-07 57.8 6.4 94 291-387 16-133 (158)
213 3qwp_A SET and MYND domain-con 96.6 0.012 4E-07 63.1 11.9 92 350-441 294-398 (429)
214 3ly7_A Transcriptional activat 96.1 0.087 3E-06 54.7 14.9 64 414-477 277-340 (372)
215 3ly7_A Transcriptional activat 96.1 0.027 9.2E-07 58.5 10.8 74 375-451 274-347 (372)
216 3mkq_A Coatomer beta'-subunit; 95.7 0.029 1E-06 64.1 10.5 45 354-404 663-707 (814)
217 2kc7_A BFR218_protein; tetratr 95.7 0.034 1.2E-06 45.0 8.1 27 345-371 37-63 (99)
218 2kc7_A BFR218_protein; tetratr 95.6 0.013 4.3E-07 47.7 4.9 57 283-340 6-63 (99)
219 4b8c_D Glucose-repressible alc 95.6 0.0006 2.1E-08 78.2 -4.6 6 313-318 398-403 (727)
220 3mkq_B Coatomer subunit alpha; 95.3 0.67 2.3E-05 42.8 15.8 129 320-473 13-141 (177)
221 3mkq_B Coatomer subunit alpha; 95.1 1.5 5.2E-05 40.3 17.6 128 286-442 14-142 (177)
222 3u64_A Protein TP_0956; tetrat 94.4 0.078 2.7E-06 53.0 7.6 66 414-479 199-272 (301)
223 3lpz_A GET4 (YOR164C homolog); 94.4 3.1 0.00011 42.3 19.5 105 251-366 40-159 (336)
224 1pc2_A Mitochondria fission pr 94.4 0.29 1E-05 44.0 10.6 83 292-377 13-103 (152)
225 2wpv_A GET4, UPF0363 protein Y 94.4 2.2 7.4E-05 43.1 18.3 106 251-367 38-158 (312)
226 2v5f_A Prolyl 4-hydroxylase su 93.3 0.36 1.2E-05 40.0 8.6 63 276-338 4-72 (104)
227 1wy6_A Hypothetical protein ST 93.2 4.1 0.00014 35.8 15.4 138 258-411 19-157 (172)
228 1pc2_A Mitochondria fission pr 93.0 0.36 1.2E-05 43.4 8.7 86 359-447 14-104 (152)
229 3lvg_A Clathrin heavy chain 1; 92.8 0.0019 6.5E-08 68.7 -7.5 232 247-509 55-307 (624)
230 2v5f_A Prolyl 4-hydroxylase su 92.5 0.39 1.3E-05 39.8 7.8 65 381-445 8-77 (104)
231 3bee_A Putative YFRE protein; 92.4 1.5 5.2E-05 35.5 11.1 62 311-372 5-72 (93)
232 3bee_A Putative YFRE protein; 92.0 0.91 3.1E-05 36.9 9.3 67 275-342 4-73 (93)
233 3u64_A Protein TP_0956; tetrat 91.1 0.97 3.3E-05 45.2 10.0 88 293-382 179-281 (301)
234 4b4t_P 26S proteasome regulato 90.5 10 0.00035 40.2 18.2 182 260-441 30-245 (445)
235 2ff4_A Probable regulatory pro 90.3 2.3 7.9E-05 44.3 12.7 69 346-415 174-246 (388)
236 2wpv_A GET4, UPF0363 protein Y 90.1 17 0.00057 36.6 18.3 140 253-407 60-217 (312)
237 3txn_A 26S proteasome regulato 89.5 15 0.0005 38.3 17.9 220 249-472 22-280 (394)
238 1nzn_A CGI-135 protein, fissio 89.3 3 0.0001 36.1 10.3 84 291-377 15-106 (126)
239 4gns_B Protein CSD3, chitin bi 87.5 4 0.00014 46.3 12.8 125 279-405 250-398 (754)
240 4fhn_B Nucleoporin NUP120; pro 87.2 4.7 0.00016 48.3 14.0 145 248-396 814-989 (1139)
241 4gns_B Protein CSD3, chitin bi 86.5 4.4 0.00015 46.0 12.4 124 315-442 251-398 (754)
242 2ff4_A Probable regulatory pro 84.6 2.4 8.3E-05 44.2 8.6 107 275-381 110-248 (388)
243 1nzn_A CGI-135 protein, fissio 83.9 5.5 0.00019 34.4 9.1 69 412-480 33-107 (126)
244 4b4t_P 26S proteasome regulato 83.7 7.2 0.00025 41.4 12.0 241 205-460 28-306 (445)
245 1wdy_A 2-5A-dependent ribonucl 83.7 3.8 0.00013 39.3 9.2 206 251-475 7-240 (285)
246 4fhn_B Nucleoporin NUP120; pro 83.1 10 0.00035 45.4 14.3 59 381-439 902-963 (1139)
247 4h7y_A Dual specificity protei 81.7 11 0.00037 33.7 10.2 99 341-442 11-122 (161)
248 3txn_A 26S proteasome regulato 81.6 21 0.00072 37.1 14.3 164 278-441 20-208 (394)
249 1v54_E Cytochrome C oxidase po 81.2 6.4 0.00022 32.6 7.8 64 358-423 25-88 (109)
250 3ffl_A Anaphase-promoting comp 78.9 6.7 0.00023 35.5 8.1 111 317-442 25-149 (167)
251 3lvg_A Clathrin heavy chain 1; 77.8 0.00084 2.9E-08 71.3 -20.5 178 261-467 40-219 (624)
252 4ady_A RPN2, 26S proteasome re 77.6 9.8 0.00034 44.1 10.9 179 256-439 384-585 (963)
253 3lpz_A GET4 (YOR164C homolog); 77.4 64 0.0022 32.6 21.8 114 313-437 36-159 (336)
254 3ljn_A Hypothetical protein; a 76.4 6.7 0.00023 39.7 8.5 208 250-471 21-265 (364)
255 4b4t_R RPN7, 26S proteasome re 76.0 6.3 0.00021 41.6 8.3 96 313-408 132-238 (429)
256 4h7y_A Dual specificity protei 73.1 24 0.00082 31.5 9.8 48 357-405 74-121 (161)
257 2y69_E Cytochrome C oxidase su 71.8 14 0.00049 32.2 7.8 62 359-422 69-130 (152)
258 4b4t_R RPN7, 26S proteasome re 70.2 20 0.00067 37.7 10.5 92 279-372 133-237 (429)
259 1wy6_A Hypothetical protein ST 69.2 59 0.002 28.6 16.8 134 323-475 18-153 (172)
260 3eu9_A Huntingtin-interacting 67.9 4.5 0.00015 37.7 4.5 201 253-468 13-228 (240)
261 1n11_A Ankyrin; clathrin, BAND 66.3 14 0.00048 38.3 8.4 175 251-439 49-234 (437)
262 3o48_A Mitochondria fission 1 66.2 51 0.0018 28.5 10.3 63 309-371 37-106 (134)
263 2nsz_A Programmed cell death p 65.3 36 0.0012 29.2 9.4 62 315-376 10-76 (129)
264 1qsa_A Protein (soluble lytic 65.1 1.7E+02 0.0057 32.2 22.4 113 358-475 229-347 (618)
265 2qx5_A Nucleoporin NIC96; mRNA 64.9 77 0.0026 35.2 14.2 100 254-360 302-409 (661)
266 1wdy_A 2-5A-dependent ribonucl 64.9 13 0.00043 35.5 7.2 211 251-479 41-278 (285)
267 1v54_E Cytochrome C oxidase po 64.3 38 0.0013 28.0 8.5 48 292-339 25-72 (109)
268 3o48_A Mitochondria fission 1 63.7 29 0.001 30.1 8.3 71 375-446 37-110 (134)
269 2p58_C Putative type III secre 62.9 36 0.0012 28.1 8.0 77 293-373 23-99 (116)
270 1n11_A Ankyrin; clathrin, BAND 62.4 9.4 0.00032 39.7 6.1 174 251-439 16-201 (437)
271 1y8m_A FIS1; mitochondria, unk 61.8 51 0.0017 29.0 9.5 71 375-446 36-109 (144)
272 3aji_A 26S proteasome non-ATPa 60.4 44 0.0015 30.6 10.0 110 319-439 10-128 (231)
273 4ady_A RPN2, 26S proteasome re 60.2 45 0.0015 38.7 11.4 215 252-473 417-655 (963)
274 3ltm_A Alpha-REP4; protein eng 60.2 98 0.0034 27.9 16.2 142 311-463 32-173 (211)
275 2uwj_G Type III export protein 60.1 34 0.0012 28.2 7.4 77 293-373 22-98 (115)
276 1zbp_A Hypothetical protein VP 60.0 37 0.0013 33.2 9.2 56 285-341 5-60 (273)
277 3ffl_A Anaphase-promoting comp 59.9 53 0.0018 29.6 9.6 53 251-303 25-89 (167)
278 2p58_C Putative type III secre 59.3 74 0.0025 26.2 9.3 78 392-481 21-100 (116)
279 1zbp_A Hypothetical protein VP 58.9 12 0.00041 36.7 5.6 58 422-479 5-63 (273)
280 2ion_A PDCD4, programmed cell 58.8 32 0.0011 30.5 8.0 62 315-376 12-78 (152)
281 1y8m_A FIS1; mitochondria, unk 57.4 99 0.0034 27.1 10.8 67 309-377 36-109 (144)
282 3esl_A Checkpoint serine/threo 55.1 1E+02 0.0035 28.6 11.0 77 272-349 72-152 (202)
283 3eu9_A Huntingtin-interacting 54.1 16 0.00055 33.7 5.6 176 251-439 44-232 (240)
284 1k1a_A B-cell lymphoma 3-encod 53.8 16 0.00056 33.9 5.6 47 388-439 123-172 (241)
285 3ltm_A Alpha-REP4; protein eng 52.0 1.3E+02 0.0046 27.0 16.9 48 311-358 63-110 (211)
286 3ltj_A Alpharep-4; protein eng 50.4 1.4E+02 0.0047 26.6 17.1 80 310-393 88-167 (201)
287 2y69_E Cytochrome C oxidase su 50.2 77 0.0026 27.6 8.5 49 292-340 68-116 (152)
288 1qsa_A Protein (soluble lytic 49.3 3E+02 0.01 30.2 16.5 116 354-471 296-437 (618)
289 2p1h_A APAF-1, apoptotic prote 49.2 67 0.0023 25.5 7.9 63 296-362 24-86 (94)
290 1n00_A Annexin GH1; membrane-b 48.8 2E+02 0.007 28.5 13.2 37 346-384 78-114 (321)
291 3b7b_A Euchromatic histone-lys 47.5 39 0.0013 31.1 7.2 26 251-276 13-38 (237)
292 3kea_A K1L; tropism, ANK repea 47.0 42 0.0014 32.5 7.6 83 251-337 33-117 (285)
293 1k1a_A B-cell lymphoma 3-encod 46.6 57 0.002 29.9 8.2 15 322-336 16-30 (241)
294 2rfa_A Transient receptor pote 46.1 31 0.001 31.8 6.2 72 366-439 137-219 (232)
295 3utm_A Tankyrase-1; tankyrase, 46.0 82 0.0028 30.7 9.8 118 251-377 26-151 (351)
296 3ygs_P Procaspase 9; apoptosis 45.3 44 0.0015 27.0 6.1 65 298-364 25-89 (97)
297 3ljn_A Hypothetical protein; a 44.0 39 0.0013 33.8 7.0 178 251-439 55-266 (364)
298 3hra_A Ankyrin repeat family p 43.8 32 0.0011 30.8 5.7 81 252-337 8-94 (201)
299 4g8k_A 2-5A-dependent ribonucl 43.5 90 0.0031 30.6 9.6 26 251-276 27-52 (337)
300 3esl_A Checkpoint serine/threo 43.4 81 0.0028 29.3 8.3 52 325-376 92-148 (202)
301 3ltj_A Alpharep-4; protein eng 43.4 1.8E+02 0.006 25.9 16.9 143 311-464 27-169 (201)
302 2nsz_A Programmed cell death p 42.8 1.1E+02 0.0036 26.2 8.5 72 280-352 10-83 (129)
303 2rfa_A Transient receptor pote 42.7 48 0.0017 30.4 7.0 86 384-475 124-222 (232)
304 2dzn_A Probable 26S proteasome 42.7 28 0.00094 31.9 5.2 21 419-439 109-129 (228)
305 3b7b_A Euchromatic histone-lys 41.1 10 0.00036 35.3 1.9 10 425-434 185-194 (237)
306 3bu8_A Telomeric repeat-bindin 41.0 2.3E+02 0.008 26.6 13.1 51 394-444 88-144 (235)
307 3v31_A Ankyrin repeat family A 40.7 1.1E+02 0.0037 26.2 8.7 146 321-477 9-162 (167)
308 2ion_A PDCD4, programmed cell 40.5 70 0.0024 28.2 7.2 72 280-352 12-85 (152)
309 3aji_A 26S proteasome non-ATPa 40.3 56 0.0019 29.9 7.0 82 385-476 110-194 (231)
310 3t8k_A Uncharacterized protein 40.1 48 0.0017 29.9 6.3 60 253-312 10-70 (186)
311 4a1g_A Mitotic checkpoint seri 39.6 2E+02 0.0068 25.4 10.9 49 296-344 84-133 (152)
312 3v30_A DNA-binding protein rfx 39.5 74 0.0025 27.5 7.4 150 320-480 7-165 (172)
313 2d2s_A Exocyst complex compone 38.9 75 0.0026 30.3 7.6 85 251-338 23-117 (235)
314 3kea_A K1L; tropism, ANK repea 38.9 91 0.0031 29.9 8.6 54 418-472 130-183 (285)
315 2kxc_B ESPF-like protein; IRTK 37.7 20 0.00068 24.9 2.3 26 46-71 17-42 (48)
316 3kae_A CDC27, possible protein 37.7 2.4E+02 0.0081 25.7 14.9 39 441-479 200-240 (242)
317 2xai_A ASB-9, ankyrin repeat a 34.9 51 0.0017 31.2 5.8 25 252-276 6-30 (261)
318 3eiq_C Programmed cell death p 34.9 1.2E+02 0.0041 30.9 8.8 62 315-376 220-286 (358)
319 2d2s_A Exocyst complex compone 34.8 2.1E+02 0.0071 27.1 10.0 85 318-405 24-118 (235)
320 3hra_A Ankyrin repeat family p 34.5 36 0.0012 30.4 4.5 83 251-338 41-129 (201)
321 4fke_A Aminopeptidase N; zinc 33.9 4.1E+02 0.014 30.6 14.2 48 355-405 738-785 (909)
322 2pby_A Glutaminase; secsg, rik 33.7 75 0.0026 31.6 6.8 106 467-596 136-254 (308)
323 4fke_A Aminopeptidase N; zinc 33.5 6E+02 0.02 29.1 16.3 22 418-439 762-783 (909)
324 1ug3_A EIF4GI, eukaryotic prot 33.3 1.1E+02 0.0039 30.7 8.4 19 421-439 148-166 (339)
325 4b4t_O 26S proteasome regulato 31.7 4.3E+02 0.015 26.9 14.0 86 283-368 82-194 (393)
326 2uwj_G Type III export protein 31.6 91 0.0031 25.7 5.6 49 256-306 49-97 (115)
327 2zu6_B Programmed cell death p 31.5 2.7E+02 0.0092 27.5 10.6 68 449-534 168-235 (307)
328 3l6a_A Eukaryotic translation 31.2 1.6E+02 0.0056 29.9 9.2 143 279-439 14-163 (364)
329 2zu6_B Programmed cell death p 30.9 1.4E+02 0.0049 29.6 8.5 63 314-376 168-235 (307)
330 4a1g_A Mitotic checkpoint seri 29.6 1.9E+02 0.0064 25.5 8.0 46 331-376 84-134 (152)
331 1dm5_A Annexin XII E105K mutan 29.4 4.2E+02 0.014 26.1 16.0 149 294-454 16-195 (315)
332 2f8y_A Notch homolog 1, transl 29.4 1E+02 0.0036 27.7 6.9 27 251-277 27-53 (223)
333 2etb_A Transient receptor pote 28.7 21 0.00072 33.7 1.8 21 288-308 10-30 (256)
334 3d9h_A CDNA FLJ77766, highly s 27.2 87 0.003 30.1 6.1 46 251-297 61-109 (285)
335 3rjo_A Endoplasmic reticulum a 26.7 5.2E+02 0.018 26.3 13.2 30 377-406 266-295 (419)
336 1ug3_A EIF4GI, eukaryotic prot 26.6 43 0.0015 33.8 3.8 143 248-402 13-165 (339)
337 4aez_C MAD3, mitotic spindle c 25.8 2.7E+02 0.0091 26.2 8.8 69 272-343 112-181 (223)
338 2f8y_A Notch homolog 1, transl 25.7 63 0.0022 29.3 4.6 176 283-477 28-214 (223)
339 1yii_A Annexin A5, annexin V, 25.7 4.9E+02 0.017 25.6 17.2 215 294-531 18-262 (320)
340 1hm6_A Annexin 1; phospholipid 25.7 5.2E+02 0.018 25.9 17.6 182 279-475 103-317 (346)
341 3qye_A TBC1 domain family memb 25.3 2.4E+02 0.0081 27.9 9.1 97 364-462 209-309 (331)
342 3jxi_A Vanilloid receptor-rela 24.9 41 0.0014 31.7 3.1 53 251-303 7-72 (260)
343 3d9h_A CDNA FLJ77766, highly s 24.7 57 0.002 31.4 4.2 19 251-269 17-35 (285)
344 2wvi_A Mitotic checkpoint seri 24.5 3.7E+02 0.013 23.9 10.2 70 272-344 58-128 (164)
345 2dzn_A Probable 26S proteasome 24.3 37 0.0013 31.0 2.6 20 253-272 6-25 (228)
346 1qb3_A Cyclin-dependent kinase 24.1 18 0.0006 31.6 0.2 9 44-52 97-105 (150)
347 2wvi_A Mitotic checkpoint seri 24.0 2.4E+02 0.0083 25.1 7.8 47 331-377 79-130 (164)
348 1lsh_A Lipovitellin (LV-1N, LV 23.7 9.2E+02 0.031 28.1 17.6 56 279-340 312-367 (1056)
349 3k1s_A PTS system, cellobiose- 23.7 1.6E+02 0.0054 24.4 6.0 19 321-339 31-49 (109)
350 3utm_A Tankyrase-1; tankyrase, 22.7 4.3E+02 0.015 25.2 10.5 215 251-479 60-305 (351)
351 1yyh_A HN1;, notch 1, ankyrin 22.6 57 0.002 30.6 3.7 164 261-439 35-212 (253)
352 1u60_A Probable glutaminase YB 22.2 53 0.0018 32.8 3.3 148 409-596 90-254 (310)
353 1s70_B 130 kDa myosin-binding 21.9 2.3E+02 0.0077 26.8 8.0 50 283-336 43-94 (299)
354 3mkr_B Coatomer subunit alpha; 21.4 5.4E+02 0.019 25.5 10.5 143 318-479 22-230 (320)
355 2fe3_A Peroxide operon regulat 21.3 2E+02 0.0069 24.7 6.7 63 367-431 11-73 (145)
356 2hyv_A Annexin A2; calcium-bin 20.9 5.9E+02 0.02 24.9 16.4 121 279-409 63-206 (308)
357 4b4t_S RPN3, 26S proteasome re 20.9 3.8E+02 0.013 28.6 9.8 63 344-406 232-298 (523)
358 3kae_A CDC27, possible protein 20.6 4.8E+02 0.016 23.7 14.9 146 256-407 43-237 (242)
359 4gq2_M Nucleoporin NUP120; bet 20.4 6E+02 0.021 29.3 12.4 108 318-428 816-950 (950)
360 2y1l_E Darpin-8.4; hydrolase-i 20.4 2.3E+02 0.0077 24.2 7.0 21 419-439 115-135 (169)
361 2knz_A Ubiquilin-4; cytoplasm, 20.2 1.2E+02 0.0043 21.3 4.1 37 558-594 10-48 (53)
362 2qx5_A Nucleoporin NIC96; mRNA 20.0 4.3E+02 0.015 29.2 10.4 22 424-446 548-569 (661)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=4.9e-29 Score=275.43 Aligned_cols=187 Identities=9% Similarity=0.130 Sum_probs=160.3
Q ss_pred CCCCCH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------HHHHHHHHHHhhc-
Q 044791 272 GVKADA-SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS---------MTDARRVFDHMAD- 340 (623)
Q Consensus 272 ~~~pd~-~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~---------~~~A~~lf~~m~~- 340 (623)
++.... ..++.+|++|++.|++++|+++|++|++.|+.||..+||+||.+|++.+. +++|.++|++|.+
T Consensus 20 ~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~ 99 (501)
T 4g26_A 20 AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD 99 (501)
T ss_dssp ----CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh
Confidence 444433 45888899999999999999999999999999999999999999887664 6889999999875
Q ss_pred ---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccch
Q 044791 341 ---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHY 417 (623)
Q Consensus 341 ---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty 417 (623)
+|++|||+||.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+. |+.||..||
T Consensus 100 G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-G~~Pd~~ty 178 (501)
T 4g26_A 100 KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES-EVVPEEPEL 178 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCCCCHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCCHHHH
Confidence 5888999999999999999999999999999999999999999999999999999999999999876 999999999
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHHc
Q 044791 418 LGLVGVLGKCGHLFEAQQFIEQKL---PFEPTAEFWEALRNYARIH 460 (623)
Q Consensus 418 ~~Li~~~~k~g~~e~A~~lf~~~m---~~~Pd~~ty~~Li~a~~~~ 460 (623)
++||.+|++.|++++|.++|++ | +..|+..||++|+..|+..
T Consensus 179 ~~Li~~~~~~g~~d~A~~ll~~-Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 179 AALLKVSMDTKNADKVYKTLQR-LRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-HHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHhhCCCHHHHHHHHHH-HHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999988 5 3788999999998888753
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.1e-28 Score=272.61 Aligned_cols=180 Identities=12% Similarity=0.151 Sum_probs=171.1
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHH----cCCCCCHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCCCCHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMD----KGVKADASCFYTLFELCGNPKW---------YENAKKVHDYFLQSTIRGDLV 313 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~----~~~~pd~~ty~~Ll~~~~~~g~---------~~~A~~l~~~m~~~g~~pd~~ 313 (623)
..++.+|.+|++.|++++|+++|+ +|+.||..|||+||.+|++.+. +++|.++|++|++.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 356788999999999999999995 4999999999999999998764 789999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhc----CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMAD----RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG 389 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~----~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~ 389 (623)
||++||.+|++.|++++|+++|++|.+ +|++|||+||.+|++.|++++|+++|++|.+.|+.||..||++||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999986 5889999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhc
Q 044791 390 SADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKC 427 (623)
Q Consensus 390 ~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~ 427 (623)
+.|++++|.++|++|.+. |+.|+..||+.|+..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 999999999999999977 9999999999999999864
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.4e-26 Score=259.19 Aligned_cols=272 Identities=11% Similarity=0.030 Sum_probs=156.5
Q ss_pred ccccc-----cCCChHHHHHHHHHhcCCCCCCCccC---------------CccccccCCCCCCCCchHHHHHHHHHHHc
Q 044791 200 QWNNQ-----QNQGYPQARNSYQQVSPGHQIPNQLN---------------NVPNNMNQCPAGDQVLPPSVADLARLCQE 259 (623)
Q Consensus 200 ~w~~~-----~~g~~~~A~~lf~~m~~~~~~p~~~~---------------~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 259 (623)
.|+.+ +.|++++|+.+|++|.. ..|+... ....++..+.....+..+++.++.+|++.
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~ 163 (597)
T 2xpi_A 86 YLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKL 163 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence 56554 78899999999988742 2232110 00111111111233556778888888899
Q ss_pred CCHHHHHHHHHcCCCC-------------------CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHH----
Q 044791 260 GKVKEAIELMDKGVKA-------------------DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNN---- 316 (623)
Q Consensus 260 g~~~~A~~l~~~~~~p-------------------d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~---- 316 (623)
|++++|+++|++...- +..+|+.++.+|.+.|++++|+++|++|++.+.. +...+.
T Consensus 164 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~ 242 (597)
T 2xpi_A 164 YDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVS 242 (597)
T ss_dssp TCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHH
Confidence 9999999888753322 3678889999999999999999999888775421 222222
Q ss_pred ----------------------------------HHHHHHHHcCCHHHHHHHHHHhhc--CChHHHHHHHHHHHHcCChH
Q 044791 317 ----------------------------------KVIEMYGKCGSMTDARRVFDHMAD--RSMDSWHLMINGYADNGLGD 360 (623)
Q Consensus 317 ----------------------------------~Li~~y~k~g~~~~A~~lf~~m~~--~~~~tyn~Li~~~~~~g~~e 360 (623)
.++.+|++.|++++|+++|++|.+ .++.+|+.++.+|.+.|+++
T Consensus 243 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 322 (597)
T 2xpi_A 243 NHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFI 322 (597)
T ss_dssp TTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHH
T ss_pred hhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHH
Confidence 223344455556666666665554 45556666666666666666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhh
Q 044791 361 EGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQK 440 (623)
Q Consensus 361 eA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~ 440 (623)
+|+.+|++|.+.+.. +..+++.++.+|.+.|++++|.++|++|.+. ...+..+|+.++.+|.+.|++++|.++|+++
T Consensus 323 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 323 DVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp HHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 666666666654322 3444555555555555555555555555421 1223445555555555555555555555553
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 441 LPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 441 m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
+...| +..+|+.++.+|.+.|++++|.++++.+.++.
T Consensus 400 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 400 STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33222 34455555555555555555555555554443
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=5.3e-26 Score=254.54 Aligned_cols=321 Identities=10% Similarity=-0.050 Sum_probs=268.3
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHcC--CCCC-HHH--------------------------------------HHHH
Q 044791 245 VLPPSVADLARLCQEGKVKEAIELMDKG--VKAD-ASC--------------------------------------FYTL 283 (623)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~A~~l~~~~--~~pd-~~t--------------------------------------y~~L 283 (623)
...+++.++.+|.+.|++++|+++|++. ..|+ ... |+.+
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 278 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK 278 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHH
Confidence 4568889999999999999999999752 2232 222 3333
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChH
Q 044791 284 FELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGD 360 (623)
Q Consensus 284 l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~e 360 (623)
+.+|.+.|++++|+++|++|.+. .++..+|+.++.+|.+.|++++|+++|++|.+ .+..+|+.++.+|.+.|+++
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 356 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN 356 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHH
Confidence 56677889999999999999875 57999999999999999999999999999975 35669999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 361 EGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 361 eA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
+|+.+|++|.+.. ..+..+|+.++.+|.+.|++++|.++|+++.+. .| +..+|+.++.+|.+.|++++|+++|++
T Consensus 357 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 357 KLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM---DPQFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999653 447889999999999999999999999999853 34 577999999999999999999999999
Q ss_pred hCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchH
Q 044791 440 KLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDD 518 (623)
Q Consensus 440 ~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~ 518 (623)
++...| +..+|..++.+|.+.|++++|.++++.+.++.+. +..+|..+...+.+.|++ +
T Consensus 433 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~--------~ 492 (597)
T 2xpi_A 433 AARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY------------DPLLLNELGVVAFNKSDM--------Q 492 (597)
T ss_dssp HHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHTTCH--------H
T ss_pred HHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------ChHHHHHHHHHHHHhCCH--------H
Confidence 555555 7799999999999999999999999999987654 356899999999999988 7
Q ss_pred HHHHHHHHHHHC----CcccC--cceeeeccCHHHHHHHHHHHHhHHHHHHhcccCCC----CCh---hHHHhhHhhhcc
Q 044791 519 EKLKALNQMKES----TYVPD--TRYVLHDIDQEAKEQALLYHSERLAIAYGLISTPA----RTP---LRIIKNLRVCGD 585 (623)
Q Consensus 519 eal~~~~~M~~~----Gi~Pd--~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~----~~~---~~i~~~l~~~g~ 585 (623)
+|+++|++|.+. +..|+ ..+|..+. .++.+.|++++|..+++++. ... ..+...+...|+
T Consensus 493 ~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~-------~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 565 (597)
T 2xpi_A 493 TAINHFQNALLLVKKTQSNEKPWAATWANLG-------HAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI 565 (597)
T ss_dssp HHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH-------HHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhhhccccchhhHHHHHHHHH-------HHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 999999998766 77787 34555555 47888999999998887642 121 124455788899
Q ss_pred hhHHHHHHHHHhC
Q 044791 586 CHNAIKIMSRIVG 598 (623)
Q Consensus 586 ~~~a~~l~~~~~~ 598 (623)
.++|.+++.++.+
T Consensus 566 ~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 566 PGLAITHLHESLA 578 (597)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998875
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.88 E-value=5.1e-21 Score=202.73 Aligned_cols=342 Identities=13% Similarity=0.036 Sum_probs=275.8
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc---CCCCCHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK---GVKADASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~---~~~pd~~ty~ 281 (623)
+.|++++|++.|+++.+ ..|+ ....+..+...+...|++++|..+++. ....+..+|.
T Consensus 11 ~~g~~~~A~~~~~~~~~--~~p~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~ 71 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWR--QEPD-----------------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS 71 (388)
T ss_dssp HHTCHHHHHHHHHHHHH--HCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--hCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHH
Confidence 68999999999998733 1222 223344666778899999999999964 3345678999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCC
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGL 358 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~ 358 (623)
.+..++.+.|++++|++.|+++++.. +.+..+|..++.+|.+.|++++|++.|+++.+. +...+..+...|...|+
T Consensus 72 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 150 (388)
T 1w3b_A 72 NLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGR 150 (388)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccC
Confidence 99999999999999999999999863 335778999999999999999999999998753 34478888899999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHH
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFI 437 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf 437 (623)
+++|+.+|+++.+... -+..+|..+..++...|++++|+..|+++.+. .| +...|..+...+...|++++|+..|
T Consensus 151 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~ 226 (388)
T 1w3b_A 151 LEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL---DPNFLDAYINLGNVLKEARIFDRAVAAY 226 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998632 25789999999999999999999999999853 44 4667888999999999999999999
Q ss_pred HhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccc
Q 044791 438 EQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYR 516 (623)
Q Consensus 438 ~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~ 516 (623)
++++...| +..+|..+..+|...|++++|.+.++.+.++.+.. ..++..+...+.+.|++
T Consensus 227 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~g~~------- 287 (388)
T 1w3b_A 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF------------PDAYCNLANALKEKGSV------- 287 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC------------HHHHHHHHHHHHHHSCH-------
T ss_pred HHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------------HHHHHHHHHHHHHcCCH-------
Confidence 99666667 57899999999999999999999999999876543 44788888899999988
Q ss_pred hHHHHHHHHHHHHCCcccCc-ceeeeccCHHHHHHHHHHHHhHHHHHHhcccCCCC-Ch------hHHHhhHhhhcchhH
Q 044791 517 DDEKLKALNQMKESTYVPDT-RYVLHDIDQEAKEQALLYHSERLAIAYGLISTPAR-TP------LRIIKNLRVCGDCHN 588 (623)
Q Consensus 517 ~~eal~~~~~M~~~Gi~Pd~-~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~~-~~------~~i~~~l~~~g~~~~ 588 (623)
++|+++|+++.+. .|+. .++.. .+.++...|++++|..++.++.. .| ..+...+...|+.++
T Consensus 288 -~~A~~~~~~al~~--~p~~~~~~~~-------l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 357 (388)
T 1w3b_A 288 -AEAEDCYNTALRL--CPTHADSLNN-------LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 357 (388)
T ss_dssp -HHHHHHHHHHHHH--CTTCHHHHHH-------HHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHH
T ss_pred -HHHHHHHHHHHhh--CcccHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHH
Confidence 7999999888765 2433 22322 23577788999999988766431 11 123445678899999
Q ss_pred HHHHHHHHhCC
Q 044791 589 AIKIMSRIVGR 599 (623)
Q Consensus 589 a~~l~~~~~~~ 599 (623)
|++.+.++.+.
T Consensus 358 A~~~~~~a~~~ 368 (388)
T 1w3b_A 358 ALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhh
Confidence 99999998764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.84 E-value=9e-20 Score=193.13 Aligned_cols=313 Identities=14% Similarity=0.101 Sum_probs=258.5
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCCC-HHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK--GVKAD-ASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~pd-~~ty~ 281 (623)
..|++++|...++...+ .. +.....+..+..+|.+.|++++|++.|++ .+.|+ ..+|.
T Consensus 45 ~~~~~~~a~~~~~~a~~--~~-----------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 105 (388)
T 1w3b_A 45 QCRRLDRSAHFSTLAIK--QN-----------------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYI 105 (388)
T ss_dssp HTTCHHHHHHHHHHHHH--HC-----------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHh--cC-----------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHH
Confidence 78999999999997733 11 12345677899999999999999999986 34454 45799
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCC
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGL 358 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~ 358 (623)
.++.++.+.|++++|++.|+++++.. +-+...+..+...|...|++++|+++|+++.+. +..+|+.+...+.+.|+
T Consensus 106 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 184 (388)
T 1w3b_A 106 NLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184 (388)
T ss_dssp HHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999864 224677888999999999999999999998753 45699999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHH
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFI 437 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf 437 (623)
+++|+..|+++.+.+. -+...|..+...+...|++++|+..|++... +.| +..++..+..+|.+.|++++|++.|
T Consensus 185 ~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 260 (388)
T 1w3b_A 185 IWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALS---LSPNHAVVHGNLACVYYEQGLIDLAIDTY 260 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCcCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998642 2567889999999999999999999999884 345 4678899999999999999999999
Q ss_pred HhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccc
Q 044791 438 EQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYR 516 (623)
Q Consensus 438 ~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~ 516 (623)
++++...| +..+|..+..+|...|++++|.+.++.+.++.+. +..++..+...+.+.|++
T Consensus 261 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------------~~~~~~~l~~~~~~~g~~------- 321 (388)
T 1w3b_A 261 RRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT------------HADSLNNLANIKREQGNI------- 321 (388)
T ss_dssp HHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT------------CHHHHHHHHHHHHTTTCH-------
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc------------cHHHHHHHHHHHHHcCCH-------
Confidence 99666667 4678999999999999999999999999988654 356788888889999988
Q ss_pred hHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccCC
Q 044791 517 DDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLISTP 569 (623)
Q Consensus 517 ~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m 569 (623)
++|+++|+++.+. .|+... .....+.++.+.|++++|...+++.
T Consensus 322 -~~A~~~~~~al~~--~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 322 -EEAVRLYRKALEV--FPEFAA------AHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp -HHHHHHHHHHTTS--CTTCHH------HHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhc--CCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7999999888653 455322 1222335778889999998887653
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.79 E-value=7.1e-18 Score=181.43 Aligned_cols=286 Identities=12% Similarity=0.066 Sum_probs=235.4
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCC--CC-CHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGV--KA-DASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~--~p-d~~ty~ 281 (623)
+.|++++|+.+|+++.. ..| .....+..+..+|...|++++|+++|++.+ .| +..++.
T Consensus 38 ~~g~~~~A~~~~~~~l~--~~p-----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 98 (450)
T 2y4t_A 38 AAGQLADALSQFHAAVD--GDP-----------------DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARL 98 (450)
T ss_dssp HTTCHHHHHHHHHHHHH--HCT-----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--hCC-----------------ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 89999999999998833 111 124566788899999999999999997632 23 467899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-H---HHHHHH------------HHHHHHcCCHHHHHHHHHHhhc---CC
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGD-L---VLNNKV------------IEMYGKCGSMTDARRVFDHMAD---RS 342 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-~---~~y~~L------------i~~y~k~g~~~~A~~lf~~m~~---~~ 342 (623)
.++.+|.+.|++++|+++|+++++. .|+ . .++..| ...|.+.|++++|+.+|+++.+ .+
T Consensus 99 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 176 (450)
T 2y4t_A 99 QRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWD 176 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999985 344 3 566655 4448999999999999999875 35
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc-cchhhH-
Q 044791 343 MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGT-EHYLGL- 420 (623)
Q Consensus 343 ~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~-~ty~~L- 420 (623)
...|..++.+|.+.|++++|+.+|+++.+.. ..+..++..+..+|...|++++|+.+|+++.. +.|+. ..+..+
T Consensus 177 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~~~~ 252 (450)
T 2y4t_A 177 AELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK---LDQDHKRCFAHYK 252 (450)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCChHHHHHHHH
Confidence 6789999999999999999999999998763 33688999999999999999999999999984 34543 334444
Q ss_pred -----------HHHHHhcCCHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCC
Q 044791 421 -----------VGVLGKCGHLFEAQQFIEQKLPFEPT-----AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPK 484 (623)
Q Consensus 421 -----------i~~~~k~g~~e~A~~lf~~~m~~~Pd-----~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~ 484 (623)
..+|.+.|++++|+++|++++...|+ ...|..+..++.+.|++++|...++.+.++.+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~----- 327 (450)
T 2y4t_A 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD----- 327 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-----
Confidence 78899999999999999996666676 457888999999999999999999999887654
Q ss_pred CCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcc
Q 044791 485 KIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTR 537 (623)
Q Consensus 485 ~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~ 537 (623)
+...+..+..+|...|++ ++|++.|++..+ +.|+..
T Consensus 328 -------~~~~~~~l~~~~~~~~~~--------~~A~~~~~~al~--~~p~~~ 363 (450)
T 2y4t_A 328 -------NVNALKDRAEAYLIEEMY--------DEAIQDYETAQE--HNENDQ 363 (450)
T ss_dssp -------CHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHT--TSSSCH
T ss_pred -------cHHHHHHHHHHHHHhcCH--------HHHHHHHHHHHH--hCcchH
Confidence 356888889999999988 799999988876 456643
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.79 E-value=6.3e-18 Score=181.85 Aligned_cols=297 Identities=10% Similarity=0.017 Sum_probs=238.2
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHcC---CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044791 244 QVLPPSVADLARLCQEGKVKEAIELMDKG---VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIE 320 (623)
Q Consensus 244 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~---~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~ 320 (623)
.....+..+...|.+.|++++|+++|++. ...+..+|..++.++...|++++|+++|+++++.+ +.+..++..++.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34556778889999999999999999753 23467889999999999999999999999999975 336899999999
Q ss_pred HHHHcCCHHHHHHHHHHhhcCCh------HHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 044791 321 MYGKCGSMTDARRVFDHMADRSM------DSWHLM------------INGYADNGLGDEGLQLFEQMRKLGLQPNEQTFL 382 (623)
Q Consensus 321 ~y~k~g~~~~A~~lf~~m~~~~~------~tyn~L------------i~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~ 382 (623)
+|.+.|++++|+++|+++.+.+. ..|..+ ...+.+.|++++|+.+|+++.+.. ..+..++.
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 181 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRE 181 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 99999999999999999986433 555555 444999999999999999999863 23778899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHH--------
Q 044791 383 AVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-EFWEAL-------- 453 (623)
Q Consensus 383 ~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ty~~L-------- 453 (623)
.+..+|.+.|++++|+++|+++.+. ...+..+|..++.+|...|++++|+++|++++...|+. ..+..+
T Consensus 182 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 182 LRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999854 22357889999999999999999999999966656644 445444
Q ss_pred ----HHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHH
Q 044791 454 ----RNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKE 529 (623)
Q Consensus 454 ----i~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~ 529 (623)
...|...|++++|...++.+.++.+.... .....+..+...+.+.|++ ++|+++++++.+
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~a~~ 323 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAE--------YTVRSKERICHCFSKDEKP--------VEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHH--------HHHHHHHHHHHHHHTTTCH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchH--------HHHHHHHHHHHHHHHCCCH--------HHHHHHHHHHHH
Confidence 78899999999999999999987655311 1134677888889999988 699999988765
Q ss_pred CCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccC
Q 044791 530 STYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLIST 568 (623)
Q Consensus 530 ~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~ 568 (623)
. .|+... .....+.++...|++++|...++.
T Consensus 324 ~--~p~~~~------~~~~l~~~~~~~~~~~~A~~~~~~ 354 (450)
T 2y4t_A 324 M--EPDNVN------ALKDRAEAYLIEEMYDEAIQDYET 354 (450)
T ss_dssp H--CTTCHH------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred h--CcccHH------HHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4 344321 122233567778888888877664
No 9
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.78 E-value=2.3e-19 Score=204.97 Aligned_cols=158 Identities=16% Similarity=0.106 Sum_probs=132.7
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----CChHHHHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQ---STIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD----RSMDSWHL 348 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~---~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~----~~~~tyn~ 348 (623)
-..|||+||++||+.|++++|.++|++|.+ .|+.||++|||+||++||+.|++++|+++|++|.+ +|++|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 347899999999999999999999988764 58999999999999999999999999999999975 79999999
Q ss_pred HHHHHHHcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC------ccchhhHH
Q 044791 349 MINGYADNGLG-DEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG------TEHYLGLV 421 (623)
Q Consensus 349 Li~~~~~~g~~-eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~------~~ty~~Li 421 (623)
||.+||+.|+. ++|.++|++|.+.|+.||.+||+++|.++.+. .+++.++++.. ++.|+ ..+...|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P--~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKP--TFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCC--CCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCc--ccCCCCCCcccccchHHHH
Confidence 99999999985 78999999999999999999999999877664 44444444432 44443 55666778
Q ss_pred HHHHhcC---------CHHHHHHHHHh
Q 044791 422 GVLGKCG---------HLFEAQQFIEQ 439 (623)
Q Consensus 422 ~~~~k~g---------~~e~A~~lf~~ 439 (623)
+.|.+.+ ..++-.++|++
T Consensus 280 dl~s~d~~~s~pk~~~~~~~L~~~~~~ 306 (1134)
T 3spa_A 280 DVYAKDGRVSYPKLHLPLKTLQCLFEK 306 (1134)
T ss_dssp HHHCCCSCCCCCCCSSCHHHHHHHHHH
T ss_pred HHHccCCCCcCccccCCHHHHHHHHHH
Confidence 8888766 35777777766
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.77 E-value=3.7e-17 Score=178.31 Aligned_cols=348 Identities=12% Similarity=-0.037 Sum_probs=267.0
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC--CCC-CHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG--VKA-DASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~~p-d~~ty~ 281 (623)
..|++++|+..|+++.... | +...+..+..+|.+.|++++|++.|++. ..| +..+|.
T Consensus 18 ~~g~~~~A~~~~~~al~~~--p------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 77 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELK--E------------------DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLL 77 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHC--C------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HhccHHHHHHHHHHHHhcC--c------------------cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHH
Confidence 6899999999999984411 2 2345668889999999999999999752 234 457899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCC---------------------------------------------------
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRG--------------------------------------------------- 310 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p--------------------------------------------------- 310 (623)
.++.++.+.|++++|+..|+++.+.+...
T Consensus 78 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (514)
T 2gw1_A 78 RRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQEN 157 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------C
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccC
Confidence 99999999999999999999998764210
Q ss_pred ---------------------------CHHHHHHHHHHHHH---cCCHHHHHHHHHHhhc-----C------------Ch
Q 044791 311 ---------------------------DLVLNNKVIEMYGK---CGSMTDARRVFDHMAD-----R------------SM 343 (623)
Q Consensus 311 ---------------------------d~~~y~~Li~~y~k---~g~~~~A~~lf~~m~~-----~------------~~ 343 (623)
+...+..+...+.. .|++++|+.+|+++.+ . +.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (514)
T 2gw1_A 158 LPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLA 237 (514)
T ss_dssp CCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHH
T ss_pred CchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHH
Confidence 13333333443443 8999999999998876 2 23
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHH
Q 044791 344 DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGV 423 (623)
Q Consensus 344 ~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~ 423 (623)
.+|..+...+...|++++|+.+|+++.+.... ..++..+..++...|++++|...++.+... ...+..+|..+..+
T Consensus 238 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 238 ISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHH
Confidence 48899999999999999999999999987544 888999999999999999999999999842 22356788899999
Q ss_pred HHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhh
Q 044791 424 LGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDG 502 (623)
Q Consensus 424 ~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~ 502 (623)
|...|++++|+.+|++++...| +..+|..+...|...|++++|...++.+.+..+.. ...+..+...
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~la~~ 381 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA------------PEVPNFFAEI 381 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC------------SHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC------------HHHHHHHHHH
Confidence 9999999999999999665555 56788999999999999999999999998876553 3467777888
Q ss_pred cCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHH---HhHHHHHHhcccCC----CCChh-
Q 044791 503 KSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYH---SERLAIAYGLISTP----ARTPL- 574 (623)
Q Consensus 503 ~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~---~g~l~~A~~ll~~m----~~~~~- 574 (623)
+.+.|++ ++|+.+|+++.+. .|+.......+......+.++.. .|++++|...+... +....
T Consensus 382 ~~~~~~~--------~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 451 (514)
T 2gw1_A 382 LTDKNDF--------DKALKQYDLAIEL--ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451 (514)
T ss_dssp HHHTTCH--------HHHHHHHHHHHHH--HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHCCCH--------HHHHHHHHHHHHh--hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHH
Confidence 8888988 6999999777653 23332211112233344456777 89999998877653 22221
Q ss_pred --HHHhhHhhhcchhHHHHHHHHHhC
Q 044791 575 --RIIKNLRVCGDCHNAIKIMSRIVG 598 (623)
Q Consensus 575 --~i~~~l~~~g~~~~a~~l~~~~~~ 598 (623)
.+...+...|+.++|.+.+.++.+
T Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 452 KIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 233456778999999999888764
No 11
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.76 E-value=5.6e-19 Score=201.88 Aligned_cols=149 Identities=15% Similarity=0.147 Sum_probs=126.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhh-------cCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMA-------DRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLA 383 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~-------~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~ 383 (623)
-..|||+||++||++|++++|.++|++|. .+|++|||+||+|||+.|++++|+++|++|++.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 35799999999999999999999998875 36999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCC----CCHHHHHHHHHHHH
Q 044791 384 VFSACGSADA-IEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE----PTAEFWEALRNYAR 458 (623)
Q Consensus 384 li~a~~~~g~-~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~----Pd~~ty~~Li~a~~ 458 (623)
||.++|+.|+ .++|.++|++|.++ |+.||..+|++++.++.+.+-++.+.++..+ +... |.+.+...|.+.|.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~-f~p~~~~~~~~~t~~LL~dl~s 283 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPT-FSLPPQLPPPVNTSKLLRDVYA 283 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC-CCCCCCCCCCCCCCTTTHHHHC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcc-cCCCCCCcccccchHHHHHHHc
Confidence 9999999998 58999999999988 9999999999999888877655555555433 3311 12445556666666
Q ss_pred HcC
Q 044791 459 IHG 461 (623)
Q Consensus 459 ~~g 461 (623)
+.+
T Consensus 284 ~d~ 286 (1134)
T 3spa_A 284 KDG 286 (1134)
T ss_dssp CCS
T ss_pred cCC
Confidence 555
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.72 E-value=3.2e-16 Score=172.28 Aligned_cols=350 Identities=11% Similarity=0.048 Sum_probs=257.1
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC--CCC-CHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG--VKA-DASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~~p-d~~ty~ 281 (623)
+.|++++|++.|+++.. ..|+ ....+..+..+|.+.|++++|++.|++. +.| +..++.
T Consensus 37 ~~g~~~~A~~~~~~al~--~~p~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 97 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIE--LDPN-----------------EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALL 97 (537)
T ss_dssp HTTCCC-CHHHHHHHHH--HCTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhccHHHHHHHHHHHHh--hCCC-----------------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHH
Confidence 89999999999998843 1121 2356668888999999999999999763 234 567899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCC------------------------------------CCCHH------------
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTI------------------------------------RGDLV------------ 313 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~------------------------------------~pd~~------------ 313 (623)
.+..++...|++++|++.|+.+....- .|+..
T Consensus 98 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 98 RRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 999999999999999999963311100 01111
Q ss_pred ------------------HHHHHHHHHHH--------cCCHHHHHHHHHHhhcCC----------hHHHHHHHHHHHHcC
Q 044791 314 ------------------LNNKVIEMYGK--------CGSMTDARRVFDHMADRS----------MDSWHLMINGYADNG 357 (623)
Q Consensus 314 ------------------~y~~Li~~y~k--------~g~~~~A~~lf~~m~~~~----------~~tyn~Li~~~~~~g 357 (623)
....+...+.. .|++++|+.+|+++.+.+ ..+|..+...+...|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 11222222111 247899999999987643 226788888899999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHH
Q 044791 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFI 437 (623)
Q Consensus 358 ~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf 437 (623)
++++|+.+|+++.+. .|+..++..+...+...|++++|.++|+++... . .-+..+|..+...|...|++++|++.|
T Consensus 258 ~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 258 NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL-N-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc-C-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999986 566888999999999999999999999999854 1 225678899999999999999999999
Q ss_pred HhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccc
Q 044791 438 EQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYR 516 (623)
Q Consensus 438 ~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~ 516 (623)
++++...| +...|..+...|...|++++|...++.+.+..+.. ...+..+...+...|++
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~------- 394 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL------------PEVPTFFAEILTDRGDF------- 394 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------THHHHHHHHHHHHTTCH-------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHhCCH-------
Confidence 99665555 46789999999999999999999999999987654 34677777888888887
Q ss_pred hHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHH----------hHHHHHHhcccCC----CCChh---HHHhh
Q 044791 517 DDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHS----------ERLAIAYGLISTP----ARTPL---RIIKN 579 (623)
Q Consensus 517 ~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~----------g~l~~A~~ll~~m----~~~~~---~i~~~ 579 (623)
++|++.|+++.+.. |+.......+......+.++... |++++|...+... +.... .+-..
T Consensus 395 -~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 471 (537)
T 3fp2_A 395 -DTAIKQYDIAKRLE--EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471 (537)
T ss_dssp -HHHHHHHHHHHHHH--HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcC--CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 69999997776543 33333333332233334456666 9999998887653 22221 23345
Q ss_pred HhhhcchhHHHHHHHHHhCC
Q 044791 580 LRVCGDCHNAIKIMSRIVGR 599 (623)
Q Consensus 580 l~~~g~~~~a~~l~~~~~~~ 599 (623)
+...|+..+|.+.+.++.+.
T Consensus 472 ~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 472 KLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh
Confidence 67779999999998887643
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.71 E-value=8.9e-16 Score=167.35 Aligned_cols=319 Identities=11% Similarity=0.025 Sum_probs=249.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKG--VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~--~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~ 325 (623)
.+..+...+.+.|++++|+.+|++. ..||..+|..+..++.+.|++++|++.++++++.+ +.+..+|..++.+|.+.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHH
Confidence 3446677899999999999999762 34899999999999999999999999999999875 34678999999999999
Q ss_pred CCHHHHHHHHHHhhcCC---------------------------------------------------------------
Q 044791 326 GSMTDARRVFDHMADRS--------------------------------------------------------------- 342 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~~--------------------------------------------------------------- 342 (623)
|++++|+..|+++.+.+
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 99999999999886432
Q ss_pred -------------------hHHHHHHHHHHHH---cCChHHHHHHHHHHHH-----cCCCC--------CHHHHHHHHHH
Q 044791 343 -------------------MDSWHLMINGYAD---NGLGDEGLQLFEQMRK-----LGLQP--------NEQTFLAVFSA 387 (623)
Q Consensus 343 -------------------~~tyn~Li~~~~~---~g~~eeA~~l~~eM~~-----~g~~P--------d~~ty~~li~a 387 (623)
...+..+...+.. .|++++|+.+|+++.+ ..-.| +..++..+..+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF 246 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence 1223333333333 8999999999999998 32122 35678888999
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHH
Q 044791 388 CGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLE 466 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A 466 (623)
+...|++++|..+|+.+... . |+..+|..+..+|...|++++|+++|++++...| +..+|..+...|...|++++|
T Consensus 247 ~~~~~~~~~A~~~~~~~l~~-~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 323 (514)
T 2gw1_A 247 KFLKNDPLGAHEDIKKAIEL-F--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQA 323 (514)
T ss_dssp HHHSSCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHH
T ss_pred HHHCCCHHHHHHHHHHHHhh-C--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHH
Confidence 99999999999999999865 3 3477888999999999999999999999666555 567899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHH
Q 044791 467 DHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQE 546 (623)
Q Consensus 467 ~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~ 546 (623)
...++.+.++.+.. ...+..+...+...|++ ++|+.+|+++.+. .|+.. ...
T Consensus 324 ~~~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~--------~~A~~~~~~~~~~--~~~~~------~~~ 375 (514)
T 2gw1_A 324 GKDFDKAKELDPEN------------IFPYIQLACLAYRENKF--------DDCETLFSEAKRK--FPEAP------EVP 375 (514)
T ss_dssp HHHHHHHHHTCSSC------------SHHHHHHHHHTTTTTCH--------HHHHHHHHHHHHH--STTCS------HHH
T ss_pred HHHHHHHHHhChhh------------HHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHH--cccCH------HHH
Confidence 99999999876653 34777888889999988 6999999887654 23322 112
Q ss_pred HHHHHHHHHHhHHHHHHhcccCCC----CC---------hhHHHhhHhh---hcchhHHHHHHHHHhC
Q 044791 547 AKEQALLYHSERLAIAYGLISTPA----RT---------PLRIIKNLRV---CGDCHNAIKIMSRIVG 598 (623)
Q Consensus 547 ~k~~~~~~~~g~l~~A~~ll~~m~----~~---------~~~i~~~l~~---~g~~~~a~~l~~~~~~ 598 (623)
...+.++...|+.++|...+.... .. ...+...+.. .|+..+|.+.+..+.+
T Consensus 376 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 376 NFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 233356777888888887765431 11 1123344566 8999999999988764
No 14
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=1.1e-15 Score=156.61 Aligned_cols=252 Identities=13% Similarity=0.092 Sum_probs=206.5
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKADASCFYTLF 284 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll 284 (623)
..|.|.+|++.++.+.. ..|+. .......+..+|...|++++|+..++..-.|+..++..+.
T Consensus 11 ~~g~y~~ai~~~~~~~~--~~p~~----------------~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la 72 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKP--SSPER----------------DVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFA 72 (291)
T ss_dssp HTTCHHHHHHHHHHSCC--CSHHH----------------HHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc--CCchh----------------hHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHH
Confidence 57999999999997733 11111 0112235678999999999999988776566778899999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHH
Q 044791 285 ELCGNPKWYENAKKVHDYFLQSTIRG-DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGL 363 (623)
Q Consensus 285 ~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~ 363 (623)
..+...++.++|++.+++++..++.| +...+..+..+|...|++++|+++|++ ..+...+..++..|.+.|++++|+
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999887555 567778888999999999999999998 567779999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhh
Q 044791 364 QLFEQMRKLGLQPNEQTF---LAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQK 440 (623)
Q Consensus 364 ~l~~eM~~~g~~Pd~~ty---~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~ 440 (623)
..|+++.+.. |+...+ ..++..+...|++++|+.+|+++.+. ...+...|+.+..+|.+.|++++|++.|+++
T Consensus 151 ~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 151 KELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999874 554322 22334445569999999999999965 3347788999999999999999999999997
Q ss_pred CCCCC-CHHHHHHHHHHHHHcCChhH-HHHHHHHHHhcCCCC
Q 044791 441 LPFEP-TAEFWEALRNYARIHGDIDL-EDHAEELMVDLDPSK 480 (623)
Q Consensus 441 m~~~P-d~~ty~~Li~a~~~~g~~~~-A~~~~~~~~~m~~~~ 480 (623)
+...| +..++..++..+...|+.++ +.+.++.+.++.|++
T Consensus 227 l~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 227 LDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 77667 66889999999999999875 578889999988775
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=9.6e-16 Score=159.91 Aligned_cols=291 Identities=12% Similarity=-0.004 Sum_probs=219.5
Q ss_pred CCChHHHHH-HHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC--C-CCCHHHHH
Q 044791 206 NQGYPQARN-SYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG--V-KADASCFY 281 (623)
Q Consensus 206 ~g~~~~A~~-lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~-~pd~~ty~ 281 (623)
.|+|++|++ .|++... ..|+.. ......+..+...|.+.|++++|+.+|++. . ..+..+|.
T Consensus 38 ~~~~~~a~~~~~~~a~~--~~~~~~-------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 102 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQ--FEEENP-------------LRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQ 102 (368)
T ss_dssp --------CHHHHCCCC--CCSSCT-------------TTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHHhhhhhHHHh--cCCCCc-------------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 577888887 7775532 111110 012344567888999999999999999762 2 33567899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH---HHHH----------
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD---SWHL---------- 348 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~---tyn~---------- 348 (623)
.+..++.+.|++++|+++|+++++.. +.+..++..+..+|.+.|++++|+++|+++.+.+.. .+..
T Consensus 103 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (368)
T 1fch_A 103 YLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGL 181 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999875 347899999999999999999999999998754322 2221
Q ss_pred -----HHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHH
Q 044791 349 -----MINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLV 421 (623)
Q Consensus 349 -----Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li 421 (623)
.+..+...|++++|+.+|+++.+..... +..++..+...|...|++++|+.+|+++... .| +..+|..+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~ 258 (368)
T 1fch_A 182 GPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLG 258 (368)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred cHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHH
Confidence 2444449999999999999999864322 5889999999999999999999999999854 34 467899999
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHh
Q 044791 422 GVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISIL 500 (623)
Q Consensus 422 ~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li 500 (623)
.+|.+.|++++|+++|++++...| +..+|..+..+|...|++++|...++.+.++.+....+.. .........+..+.
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~~~~~~l~ 337 (368)
T 1fch_A 259 ATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG-EGGAMSENIWSTLR 337 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-------CCCCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccc-cccchhhHHHHHHH
Confidence 999999999999999999666555 5688999999999999999999999999998776532100 00012256788888
Q ss_pred hhcCccccccCCcccchHHHHHHH
Q 044791 501 DGKSRLVEFRNPTLYRDDEKLKAL 524 (623)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~eal~~~ 524 (623)
.++...|++ ++|..++
T Consensus 338 ~~~~~~g~~--------~~A~~~~ 353 (368)
T 1fch_A 338 LALSMLGQS--------DAYGAAD 353 (368)
T ss_dssp HHHHHHTCG--------GGHHHHH
T ss_pred HHHHHhCCh--------HhHHHhH
Confidence 889999987 4777665
No 16
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.70 E-value=6.7e-16 Score=161.65 Aligned_cols=262 Identities=12% Similarity=0.029 Sum_probs=206.0
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHcCC---CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 245 VLPPSVADLARLCQEGKVKEAIELMDKGV---KADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEM 321 (623)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~---~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~ 321 (623)
....+..+...+.+.|++++|+++|++.+ .-+..+|..+..++...|++++|+++|+++++.. +.+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34557788999999999999999997632 3367889999999999999999999999999864 3468999999999
Q ss_pred HHHcCCHHHHHHHHHHhhcCChH-------------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 044791 322 YGKCGSMTDARRVFDHMADRSMD-------------SWHLMINGYADNGLGDEGLQLFEQMRKLGLQ-PNEQTFLAVFSA 387 (623)
Q Consensus 322 y~k~g~~~~A~~lf~~m~~~~~~-------------tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~-Pd~~ty~~li~a 387 (623)
|.+.|++++|+.+|+++.+.+.. .+..+...+...|++++|+.+|+++.+.... .+..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 99999999999999998764322 3445688899999999999999999987432 268899999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChhHH
Q 044791 388 CGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-AEFWEALRNYARIHGDIDLE 466 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-~~ty~~Li~a~~~~g~~~~A 466 (623)
|...|++++|+.+|+++.+. ...+..+|..+..+|.+.|++++|+++|++++...|+ ..+|..+..+|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999999854 2235778999999999999999999999997766664 78899999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccc
Q 044791 467 DHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEF 509 (623)
Q Consensus 467 ~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~ 509 (623)
...++...++.+....+........+...+..+-.++...|+.
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 9999999998877544211111112356677777777777765
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.70 E-value=3e-15 Score=154.50 Aligned_cols=293 Identities=10% Similarity=0.013 Sum_probs=229.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcC--CC-CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKG--VK-ADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~--~~-pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k 324 (623)
.+..+...+...|++++|+++|++. .. -+..++..+..++...|++++|++.++++++.. +-+..+|..+..+|.+
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHHH
Confidence 4557788899999999999999752 23 356789999999999999999999999999864 3367899999999999
Q ss_pred cCCHHHHHHHHHHhhcCCh---H---HHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044791 325 CGSMTDARRVFDHMADRSM---D---SWHLM------------INGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFS 386 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~~~~---~---tyn~L------------i~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~ 386 (623)
.|++++|+.+|+++.+.+. . .+..+ ...+...|++++|+.+|+++.+... .+..++..+..
T Consensus 84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~ 162 (359)
T 3ieg_A 84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAE 162 (359)
T ss_dssp HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHH
Confidence 9999999999999976544 2 44444 5789999999999999999998643 36788999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHH------------HH
Q 044791 387 ACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-EFWE------------AL 453 (623)
Q Consensus 387 a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ty~------------~L 453 (623)
.+...|++++|...++++... ...+..++..+...|...|++++|.+.|++++...|+. ..+. .+
T Consensus 163 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (359)
T 3ieg_A 163 CFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIES 240 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999843 22367788899999999999999999999966655543 3333 23
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcc
Q 044791 454 RNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYV 533 (623)
Q Consensus 454 i~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~ 533 (623)
...+...|++++|...++.+.+..+.... .....+..+-..+...|++ ++|+++|++..+. .
T Consensus 241 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------~~~~~~~~la~~~~~~~~~--------~~A~~~~~~~~~~--~ 302 (359)
T 3ieg_A 241 AEELIRDGRYTDATSKYESVMKTEPSVAE--------YTVRSKERICHCFSKDEKP--------VEAIRICSEVLQM--E 302 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSSHH--------HHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHHH--C
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCchH--------HHHHHHHHHHHHHHHccCH--------HHHHHHHHHHHHh--C
Confidence 56688999999999999999998765321 1113344566777888887 6999999777664 3
Q ss_pred cCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccC
Q 044791 534 PDTRYVLHDIDQEAKEQALLYHSERLAIAYGLIST 568 (623)
Q Consensus 534 Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~ 568 (623)
|+... .....+.++...|+.++|...+++
T Consensus 303 ~~~~~------~~~~~~~~~~~~g~~~~A~~~~~~ 331 (359)
T 3ieg_A 303 PDNVN------ALKDRAEAYLIEEMYDEAIQDYEA 331 (359)
T ss_dssp TTCHH------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccHH------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 54322 222333577788899998887765
No 18
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.69 E-value=7.5e-15 Score=151.50 Aligned_cols=285 Identities=12% Similarity=0.052 Sum_probs=228.3
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC--CCC-CHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG--VKA-DASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~~p-d~~ty~ 281 (623)
..|++++|++.|+++.. ..|+ ....+..+...|...|++++|+..|++. ..| +...|.
T Consensus 15 ~~g~~~~A~~~~~~~l~--~~p~-----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 75 (359)
T 3ieg_A 15 AAGQLADALSQFHAAVD--GDPD-----------------NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARL 75 (359)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHh--hCcc-----------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHH
Confidence 78999999999998833 1111 2345667888999999999999999763 234 567899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCC----CHHHHHHH------------HHHHHHcCCHHHHHHHHHHhhc---CC
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRG----DLVLNNKV------------IEMYGKCGSMTDARRVFDHMAD---RS 342 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p----d~~~y~~L------------i~~y~k~g~~~~A~~lf~~m~~---~~ 342 (623)
.+..++...|++++|+++|+++.+. .| +...+..+ ...+...|++++|+++|+++.+ .+
T Consensus 76 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 153 (359)
T 3ieg_A 76 QRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWD 153 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999885 44 44555555 5889999999999999999865 35
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-ccchh---
Q 044791 343 MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TEHYL--- 418 (623)
Q Consensus 343 ~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~ty~--- 418 (623)
...|..+...+...|++++|+..|+++.+.. ..+..++..+...+...|++++|...|+.+.+. .|+ ...+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~ 229 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYK 229 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHH
Confidence 6689999999999999999999999999763 336788999999999999999999999999854 333 22222
Q ss_pred ---------hHHHHHHhcCCHHHHHHHHHhhCCCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCC
Q 044791 419 ---------GLVGVLGKCGHLFEAQQFIEQKLPFEPTA-----EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPK 484 (623)
Q Consensus 419 ---------~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-----~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~ 484 (623)
.+...+.+.|++++|+++|++++...|+. ..|..+...|...|++++|...++...++.+..
T Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---- 305 (359)
T 3ieg_A 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDN---- 305 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccc----
Confidence 23667899999999999999966655653 235567789999999999999999999986543
Q ss_pred CCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCc
Q 044791 485 KIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDT 536 (623)
Q Consensus 485 ~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~ 536 (623)
...+..+-..+.+.|++ ++|++.|++..+. .|+.
T Consensus 306 --------~~~~~~~~~~~~~~g~~--------~~A~~~~~~a~~~--~p~~ 339 (359)
T 3ieg_A 306 --------VNALKDRAEAYLIEEMY--------DEAIQDYEAAQEH--NEND 339 (359)
T ss_dssp --------HHHHHHHHHHHHHTTCH--------HHHHHHHHHHHTT--CTTC
T ss_pred --------HHHHHHHHHHHHHcCCH--------HHHHHHHHHHHhc--CCCC
Confidence 45777888888889988 7999999877654 3553
No 19
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.68 E-value=6.8e-15 Score=150.40 Aligned_cols=254 Identities=12% Similarity=-0.012 Sum_probs=210.1
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC--CCC-CHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG--VKA-DASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~~p-d~~ty~ 281 (623)
..|++++|+++|+++.. ..|. ....+..++.++...|++++|+.++++. ..| +..+|.
T Consensus 34 ~~g~~~~A~~~~~~~l~--~~p~-----------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 94 (330)
T 3hym_B 34 YNCDFKMCYKLTSVVME--KDPF-----------------HASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWF 94 (330)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTT-----------------CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred HcCCHHHHHHHHHHHHH--cCCC-----------------ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHH
Confidence 78999999999998843 1122 1123346778889999999999999752 223 567899
Q ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcC
Q 044791 282 TLFELCGNPK-WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNG 357 (623)
Q Consensus 282 ~Ll~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g 357 (623)
.+...+...| ++++|+++|+++++.. +.+..+|..+..+|...|++++|++.|+++.+. +...+..+...|...|
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 9999999999 9999999999998864 335788999999999999999999999988753 4568888999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-------CCCCccchhhHHHHHHhcCCH
Q 044791 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFG-------ISPGTEHYLGLVGVLGKCGHL 430 (623)
Q Consensus 358 ~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g-------~~p~~~ty~~Li~~~~k~g~~ 430 (623)
++++|+.+|+++.+.. .-+..++..+...+...|++++|..+|+++..... ......+|..+..+|.+.|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999764 33678899999999999999999999999886421 123456888999999999999
Q ss_pred HHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 431 FEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 431 e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
++|+++|++++...| +...|..+...|...|++++|.+.++...++.+.
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 302 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD 302 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence 999999999665455 5688999999999999999999999988877654
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.68 E-value=5.8e-16 Score=161.58 Aligned_cols=253 Identities=11% Similarity=0.011 Sum_probs=196.9
Q ss_pred HHHHcCCHHHHHH-HHHcCCC--C-----CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044791 255 RLCQEGKVKEAIE-LMDKGVK--A-----DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG 326 (623)
Q Consensus 255 ~~~~~g~~~~A~~-l~~~~~~--p-----d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g 326 (623)
++...|++++|++ .|++.+. | +...+..+...+.+.|++++|+.+|+++++.. +.+..+|..+..+|.+.|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3556789999999 8876433 2 24568889999999999999999999999874 347889999999999999
Q ss_pred CHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH-H--------------HHHHH
Q 044791 327 SMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFL-A--------------VFSAC 388 (623)
Q Consensus 327 ~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~-~--------------li~a~ 388 (623)
++++|++.|+++.+ .+..+|..+...|...|++++|+..|+++.+..... ...+. . .+..+
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT-GGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999998865 356699999999999999999999999999864221 11111 1 23444
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHH
Q 044791 389 GSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLED 467 (623)
Q Consensus 389 ~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~ 467 (623)
...|++++|+.+|+++.+...-.++..++..+..+|.+.|++++|+++|++++...| +..+|..+...|...|++++|.
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 488999999999999986522222577889999999999999999999999666555 5789999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHH
Q 044791 468 HAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKE 529 (623)
Q Consensus 468 ~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~ 529 (623)
..++.+.++.+.. ...+..+...+.+.|++ ++|+++|++..+
T Consensus 272 ~~~~~al~~~~~~------------~~~~~~l~~~~~~~g~~--------~~A~~~~~~al~ 313 (368)
T 1fch_A 272 AAYRRALELQPGY------------IRSRYNLGISCINLGAH--------REAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHCTTC------------HHHHHHHHHHHHHHTCH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCc------------HHHHHHHHHHHHHCCCH--------HHHHHHHHHHHH
Confidence 9999999886543 45778888889999988 699999977654
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.67 E-value=6.8e-15 Score=150.36 Aligned_cols=264 Identities=15% Similarity=0.044 Sum_probs=217.9
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHcCC--CC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044791 246 LPPSVADLARLCQEGKVKEAIELMDKGV--KA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMY 322 (623)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~A~~l~~~~~--~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y 322 (623)
...+..+...+...|++++|+++|++.+ .| +..++..++.++...|++++|..+++++++.. +.+..+|..+...|
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 100 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYY 100 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHH
Confidence 3455677888999999999999997522 22 34567778888899999999999999999864 33678899999999
Q ss_pred HHcC-CHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044791 323 GKCG-SMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAF 398 (623)
Q Consensus 323 ~k~g-~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~ 398 (623)
...| ++++|++.|+++.+. +...|..+...+...|++++|+..|+++.+.... +..++..+...|...|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHH
Confidence 9999 999999999998753 4568999999999999999999999999986432 4567777999999999999999
Q ss_pred HHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCC----------CCCHHHHHHHHHHHHHcCChhHHH
Q 044791 399 IHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPF----------EPTAEFWEALRNYARIHGDIDLED 467 (623)
Q Consensus 399 ~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~----------~Pd~~ty~~Li~a~~~~g~~~~A~ 467 (623)
++|+++.+ ..| +..++..+...|...|++++|+.+|++++.. ..+..+|..+...|...|++++|.
T Consensus 180 ~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 180 RFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99999984 334 5678889999999999999999999984432 234578999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCc
Q 044791 468 HAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDT 536 (623)
Q Consensus 468 ~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~ 536 (623)
..++...++.+.. ...+..+-..+.+.|++ ++|+++|++..+ +.|+.
T Consensus 257 ~~~~~a~~~~~~~------------~~~~~~la~~~~~~g~~--------~~A~~~~~~al~--~~p~~ 303 (330)
T 3hym_B 257 DYHRQALVLIPQN------------ASTYSAIGYIHSLMGNF--------ENAVDYFHTALG--LRRDD 303 (330)
T ss_dssp HHHHHHHHHSTTC------------SHHHHHHHHHHHHHTCH--------HHHHHHHHTTTT--TCSCC
T ss_pred HHHHHHHhhCccc------------hHHHHHHHHHHHHhccH--------HHHHHHHHHHHc--cCCCc
Confidence 9999999987653 34777888888889988 699999976643 34553
No 22
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.66 E-value=6e-17 Score=172.86 Aligned_cols=284 Identities=14% Similarity=0.073 Sum_probs=135.4
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKADASCFYTLF 284 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll 284 (623)
..|++++|.+.++++.. |+ +|..|+.++.+.|++++|++.|.+ .+|..+|..++
T Consensus 15 ~~~~ld~A~~fae~~~~----~~--------------------vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~ 68 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNE----PA--------------------VWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVV 68 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCC----hH--------------------HHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHH
Confidence 46788999998887722 21 333788999999999999999976 36788999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHH
Q 044791 285 ELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQ 364 (623)
Q Consensus 285 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~ 364 (623)
.++...|++++|+++++..++. .++..+.+.|+.+|++.|+++++.++|+ .++..+|+.++..|...|++++|..
T Consensus 69 ~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~ 143 (449)
T 1b89_A 69 QAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKL 143 (449)
T ss_dssp ------------------------------------------CHHHHTTTTT---CC----------------CTTTHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999988877774 4567889999999999999999998885 4777899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCC
Q 044791 365 LFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE 444 (623)
Q Consensus 365 l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~ 444 (623)
+|..+ ..|..|+.++.+.|++++|.+.+..+. ++.+|..++.+|+..|+++.|..+... +.+.
T Consensus 144 ~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA~-------~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ 206 (449)
T 1b89_A 144 LYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCGLH-IVVH 206 (449)
T ss_dssp HHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTC
T ss_pred HHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHcC-------CchhHHHHHHHHHHcCcHHHHHHHHHH-HHhC
Confidence 99987 379999999999999999999998872 678999999999999999999887777 5555
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHH
Q 044791 445 PTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKAL 524 (623)
Q Consensus 445 Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~ 524 (623)
|+. ...|+..|.+.|++++|...++....+++.... ..|...++.+..+-++. .|.+++|
T Consensus 207 ad~--l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~----------~ftel~il~~ky~p~k~--------~ehl~~~ 266 (449)
T 1b89_A 207 ADE--LEELINYYQDRGYFEELITMLEAALGLERAHMG----------MFTELAILYSKFKPQKM--------REHLELF 266 (449)
T ss_dssp HHH--HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHH----------HHHHHHHHHHTTCHHHH--------HHHHHHH
T ss_pred Hhh--HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHH----------HHHHHHHHHHhcCHHHH--------HHHHHHH
Confidence 544 446999999999999999999999888865543 56666777777777765 4777777
Q ss_pred HHHHHCCccc------CcceeeeccCHHHHHHHHHHHHhHHHHHHhc
Q 044791 525 NQMKESTYVP------DTRYVLHDIDQEAKEQALLYHSERLAIAYGL 565 (623)
Q Consensus 525 ~~M~~~Gi~P------d~~t~~~li~~~~k~~~~~~~~g~l~~A~~l 565 (623)
. ....+.| +...|..++ -++.+.+.++.|...
T Consensus 267 ~--~~ini~k~~~~~~~~~~w~e~~-------~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 267 W--SRVNIPKVLRAAEQAHLWAELV-------FLYDKYEEYDNAIIT 304 (449)
T ss_dssp S--TTSCHHHHHHHHHTTTCHHHHH-------HHHHHTTCHHHHHHH
T ss_pred H--HHhcCcHHHHHHHHHHHHHHHH-------HHHHhhchHHHHHHH
Confidence 2 2223333 223343333 367788888888753
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.64 E-value=2.7e-15 Score=157.00 Aligned_cols=233 Identities=9% Similarity=-0.001 Sum_probs=189.6
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMING 352 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~ 352 (623)
+...+..+...+.+.|++++|+++|+++++.. +.+..+|..+..+|.+.|++++|+.+|+++.+ .+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44568889999999999999999999999874 34789999999999999999999999999875 356699999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHH
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQ---------PNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGV 423 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~---------Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~ 423 (623)
|...|++++|+.+|+++.+.... ....++..+...+...|++++|+.+|+++.....-..+..++..+..+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 99999999999999999875211 012344556888999999999999999999653322357789999999
Q ss_pred HHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhh
Q 044791 424 LGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDG 502 (623)
Q Consensus 424 ~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~ 502 (623)
|.+.|++++|+++|++++...| +..+|..+..+|...|++++|...++...++.+.. ..++..+-..
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~ 290 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGF------------IRSRYNLGIS 290 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------------hHHHHHHHHH
Confidence 9999999999999999666555 57899999999999999999999999999986553 5578888888
Q ss_pred cCccccccCCcccchHHHHHHHHHHHH
Q 044791 503 KSRLVEFRNPTLYRDDEKLKALNQMKE 529 (623)
Q Consensus 503 ~~~~~~~~~~~~~~~~eal~~~~~M~~ 529 (623)
+.+.|++ ++|+++|++..+
T Consensus 291 ~~~~g~~--------~~A~~~~~~al~ 309 (365)
T 4eqf_A 291 CINLGAY--------REAVSNFLTALS 309 (365)
T ss_dssp HHHHTCC--------HHHHHHHHHHHH
T ss_pred HHHCCCH--------HHHHHHHHHHHH
Confidence 9999988 699999977654
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.63 E-value=1.8e-14 Score=147.08 Aligned_cols=267 Identities=8% Similarity=-0.070 Sum_probs=211.7
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcC---CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKG---VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYG 323 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~---~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~ 323 (623)
..+..+...+...|++++|+.+|++. ..-+..++..+..++...|++++|.++++++++.. +.+..++..+..+|.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34557788899999999999999752 22366789999999999999999999999999874 347889999999999
Q ss_pred HcCCHHHHHHHHHHhhcCChH---HHHHH--------------HH-HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 044791 324 KCGSMTDARRVFDHMADRSMD---SWHLM--------------IN-GYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVF 385 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~~~~~---tyn~L--------------i~-~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li 385 (623)
+.|++++|++.|+++.+.+.. .+..+ .. .+...|++++|+.+|+++.+... .+..++..+.
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la 179 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHASLG 179 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHHHH
Confidence 999999999999998764322 33333 22 37788999999999999998743 3778999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChh
Q 044791 386 SACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDID 464 (623)
Q Consensus 386 ~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~ 464 (623)
..+...|++++|.++++++... ...+..++..+..+|.+.|++++|+++|++++...| +..+|..+...|...|+++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~ 257 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD 257 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence 9999999999999999999854 122567888999999999999999999999666555 5788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHH
Q 044791 465 LEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALN 525 (623)
Q Consensus 465 ~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~ 525 (623)
+|.+.++.+.++.+.............+...+..+...+.+.|++ ++|.++++
T Consensus 258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~ 310 (327)
T 3cv0_A 258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP--------DLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH--------HHHHHHTT
T ss_pred HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH--------HHHHHHHH
Confidence 999999999988776322100000001466777888888889987 68888773
No 25
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.62 E-value=1.3e-14 Score=159.37 Aligned_cols=326 Identities=14% Similarity=0.101 Sum_probs=238.2
Q ss_pred CCccccccc-----cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Q 044791 196 RSPNQWNNQ-----QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMD 270 (623)
Q Consensus 196 ~~p~~w~~~-----~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 270 (623)
.++..|.++ ..|++++|++.|+++.. ..|+ ....+..+..+|...|++++|++.|+
T Consensus 57 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~-----------------~~~~~~~la~~~~~~g~~~~A~~~~~ 117 (537)
T 3fp2_A 57 NEPVFYSNISACYISTGDLEKVIEFTTKALE--IKPD-----------------HSKALLRRASANESLGNFTDAMFDLS 117 (537)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTT-----------------CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCc-----------------hHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 334455555 88999999999998833 1121 23456678888999999999999884
Q ss_pred c-CCCCC---------------------------------------HH------------------------------HH
Q 044791 271 K-GVKAD---------------------------------------AS------------------------------CF 280 (623)
Q Consensus 271 ~-~~~pd---------------------------------------~~------------------------------ty 280 (623)
. ...|+ .. ..
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (537)
T 3fp2_A 118 VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLS 197 (537)
T ss_dssp HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHH
T ss_pred HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHH
Confidence 2 11121 11 11
Q ss_pred HHHHHHHhCC--------CCHHHHHHHHHHHHHcCCCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHhhc--CC
Q 044791 281 YTLFELCGNP--------KWYENAKKVHDYFLQSTIRGD--------LVLNNKVIEMYGKCGSMTDARRVFDHMAD--RS 342 (623)
Q Consensus 281 ~~Ll~~~~~~--------g~~~~A~~l~~~m~~~g~~pd--------~~~y~~Li~~y~k~g~~~~A~~lf~~m~~--~~ 342 (623)
..+...+... |++++|+.+++++++.. |+ ..++..+...+...|++++|+.+|+++.+ ++
T Consensus 198 ~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~ 275 (537)
T 3fp2_A 198 DALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT 275 (537)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC
Confidence 1222222222 47889999999998753 33 34577788889999999999999998864 55
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHH
Q 044791 343 MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLV 421 (623)
Q Consensus 343 ~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li 421 (623)
..+|..+...|...|++++|+.+|+++.+... -+..+|..+...+...|++++|+..|+++... .| +...|..+.
T Consensus 276 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la 351 (537)
T 3fp2_A 276 PNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL---NPENVYPYIQLA 351 (537)
T ss_dssp HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCSHHHHHHH
T ss_pred chHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence 66899999999999999999999999998643 36788999999999999999999999999854 33 467888999
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHh
Q 044791 422 GVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISIL 500 (623)
Q Consensus 422 ~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li 500 (623)
.+|...|++++|+++|++++...| +...|..+...|...|++++|...++.+.++.+...... .....+...-
T Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~------~~~~~~~~~a 425 (537)
T 3fp2_A 352 CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH------VGIGPLIGKA 425 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS------STTHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH------HHHHHHHHHH
Confidence 999999999999999999665555 467889999999999999999999999988876544311 1122233333
Q ss_pred hhcCcc----------ccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHHhcccC
Q 044791 501 DGKSRL----------VEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAYGLIST 568 (623)
Q Consensus 501 ~~~~~~----------~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~ 568 (623)
..+.+. |++ ++|+.+|++..+. .|+... .....+.++...|+.++|...++.
T Consensus 426 ~~~~~~~~~~~~~~~~~~~--------~~A~~~~~~a~~~--~p~~~~------~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 426 TILARQSSQDPTQLDEEKF--------NAAIKLLTKACEL--DPRSEQ------AKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHHHHHHTC----CCHHHH--------HHHHHHHHHHHHH--CTTCHH------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhccchhhhHhHH--------HHHHHHHHHHHHh--CCCCHH------HHHHHHHHHHHhccHHHHHHHHHH
Confidence 445555 777 6999999777654 344332 122333577888999999887765
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.60 E-value=3.2e-14 Score=145.13 Aligned_cols=248 Identities=10% Similarity=0.043 Sum_probs=198.3
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC--CC-CCHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG--VK-ADASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~~-pd~~ty~ 281 (623)
..|++++|+.+|+++.. ..|+ ....+..+..++.+.|++++|++.|++. .. .+..++.
T Consensus 33 ~~~~~~~A~~~~~~~~~--~~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 93 (327)
T 3cv0_A 33 KLANLAEAALAFEAVCQ--AAPE-----------------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHA 93 (327)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HhccHHHHHHHHHHHHH--hCCC-----------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHH
Confidence 89999999999998833 1111 2345567888899999999999999752 22 3567899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHhhc---CCh
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKV--------------IE-MYGKCGSMTDARRVFDHMAD---RSM 343 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~L--------------i~-~y~k~g~~~~A~~lf~~m~~---~~~ 343 (623)
.+..++...|++++|++.++++++.... +...+..+ .. .+...|++++|+++|+++.+ .+.
T Consensus 94 ~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 172 (327)
T 3cv0_A 94 ALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDA 172 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCH
Confidence 9999999999999999999999986322 22333333 22 37788999999999998865 356
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHH
Q 044791 344 DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGV 423 (623)
Q Consensus 344 ~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~ 423 (623)
..+..+...|...|++++|+.+|+++.+.. ..+..++..+...+...|++++|..+|+++.+. . ..+..++..+..+
T Consensus 173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 173 QLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI-N-PGYVRVMYNMAVS 249 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CCCHHHHHHHHHH
Confidence 689999999999999999999999999864 235788999999999999999999999998854 1 2256788899999
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCC-------------HHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 424 LGKCGHLFEAQQFIEQKLPFEPT-------------AEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 424 ~~k~g~~e~A~~lf~~~m~~~Pd-------------~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
|.+.|++++|.++|++++...|+ ..+|..+..++...|+.++|..+++...+
T Consensus 250 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 250 YSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999996654555 67899999999999999988877765433
No 27
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.57 E-value=2e-13 Score=139.75 Aligned_cols=267 Identities=11% Similarity=0.036 Sum_probs=206.5
Q ss_pred HHHHHHcCCHHHHHHHHHcCC--CCCH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 044791 253 LARLCQEGKVKEAIELMDKGV--KADA--SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSM 328 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~~--~pd~--~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~ 328 (623)
|.-....|.+..|+..+++.. .|+. .....+..+|...|++++|+..++. . -.|+..++..+...|.+.|+.
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcH
Confidence 555677999999999997643 3443 2456678899999999999987654 2 456788999999999999999
Q ss_pred HHHHHHHHHhhc----C-ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044791 329 TDARRVFDHMAD----R-SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFES 403 (623)
Q Consensus 329 ~~A~~lf~~m~~----~-~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~ 403 (623)
++|++.|+++.. + +...+..+..++...|++++|+++|++ ..+..++..++..+.+.|++++|.+.|++
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 155 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKK 155 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999863 3 455777888999999999999999988 45788999999999999999999999999
Q ss_pred HHhhcCCCCCccchhhH----HHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCC
Q 044791 404 MKSEFGISPGTEHYLGL----VGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDP 478 (623)
Q Consensus 404 m~~~~g~~p~~~ty~~L----i~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~ 478 (623)
+.+. .|+.. ...+ +..+...|++++|+.+|++++...| +...|+.+..++...|++++|+..++...++.+
T Consensus 156 ~~~~---~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 156 MQDQ---DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHH---CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhh---CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9864 35532 2233 3444456999999999999555444 778999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhH
Q 044791 479 SKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSER 558 (623)
Q Consensus 479 ~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~ 558 (623)
.. ..++..++..+...|+.. +++.++++++.+. .|+..... ++..+.+.
T Consensus 232 ~~------------~~~l~~l~~~~~~~g~~~-------eaa~~~~~~~~~~--~P~~~~~~----------d~~~~~~~ 280 (291)
T 3mkr_A 232 GH------------PETLINLVVLSQHLGKPP-------EVTNRYLSQLKDA--HRSHPFIK----------EYRAKEND 280 (291)
T ss_dssp TC------------HHHHHHHHHHHHHTTCCH-------HHHHHHHHHHHHH--CTTCHHHH----------HHHHHHHH
T ss_pred CC------------HHHHHHHHHHHHHcCCCH-------HHHHHHHHHHHHh--CCCChHHH----------HHHHHHHH
Confidence 64 346777777777788762 3356788766543 36544322 34556666
Q ss_pred HHHHHh
Q 044791 559 LAIAYG 564 (623)
Q Consensus 559 l~~A~~ 564 (623)
+++|..
T Consensus 281 fd~~~~ 286 (291)
T 3mkr_A 281 FDRLVL 286 (291)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666643
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.56 E-value=2.5e-15 Score=160.38 Aligned_cols=251 Identities=11% Similarity=0.058 Sum_probs=105.3
Q ss_pred HcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044791 258 QEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDH 337 (623)
Q Consensus 258 ~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~ 337 (623)
+.|++++|.+++++.-.| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|++.++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 678899999999886333 59999999999999999999999652 5778999999999999999999998876
Q ss_pred hhc--CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCcc
Q 044791 338 MAD--RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTE 415 (623)
Q Consensus 338 m~~--~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ 415 (623)
..+ +++.+.+.|+.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|..+|..+ .
T Consensus 87 ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~ 149 (449)
T 1b89_A 87 ARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------S 149 (449)
T ss_dssp ----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----------T
T ss_pred HHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------h
Confidence 654 344689999999999999999999885 378889999999999999999999999976 4
Q ss_pred chhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhh
Q 044791 416 HYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRT 495 (623)
Q Consensus 416 ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t 495 (623)
.|..|+++|++.|++++|.+.+++ . .+..+|..++.+|...|+++.|..+... +. . .|+.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~K-A---~~~~~Wk~v~~aCv~~~ef~lA~~~~l~---L~---~--------~ad~-- 209 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARK-A---NSTRTWKEVCFACVDGKEFRLAQMCGLH---IV---V--------HADE-- 209 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHH-H---TCHHHHHHHHHHHHHTTCHHHHHHTTTT---TT---T--------CHHH--
T ss_pred hHHHHHHHHHHhccHHHHHHHHHH-c---CCchhHHHHHHHHHHcCcHHHHHHHHHH---HH---h--------CHhh--
Confidence 799999999999999999999999 4 3889999999999999999987443332 11 1 1433
Q ss_pred HHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCc-ceeeeccCHHHHHHHHHHHHhHHHHHHhcccC
Q 044791 496 AISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDT-RYVLHDIDQEAKEQALLYHSERLAIAYGLIST 568 (623)
Q Consensus 496 ~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~-~t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~ 568 (623)
...++..|.+.|+| ++|+.+|+.-. |+.+-. ..|+.+- ....-.+.|++.++++++.+
T Consensus 210 l~~lv~~Yek~G~~--------eEai~lLe~aL--~le~ah~~~ftel~-----il~~ky~p~k~~ehl~~~~~ 268 (449)
T 1b89_A 210 LEELINYYQDRGYF--------EELITMLEAAL--GLERAHMGMFTELA-----ILYSKFKPQKMREHLELFWS 268 (449)
T ss_dssp HHHHHHHHHHTTCH--------HHHHHHHHHHT--TSTTCCHHHHHHHH-----HHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHCCCH--------HHHHHHHHHHh--CCcHHHHHHHHHHH-----HHHHhcCHHHHHHHHHHHHH
Confidence 44688889999998 69999885543 222111 1122211 11233467999999988764
No 29
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.53 E-value=3.6e-13 Score=134.02 Aligned_cols=216 Identities=11% Similarity=-0.051 Sum_probs=178.7
Q ss_pred HcCCHHHHHHHHHcCCC------C-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 044791 258 QEGKVKEAIELMDKGVK------A-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTD 330 (623)
Q Consensus 258 ~~g~~~~A~~l~~~~~~------p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~ 330 (623)
..|++++|++.|++.+. | +..+|..+..++...|++++|+++|+++++.. +.+..+|..+..+|.+.|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 45889999999975332 1 35678999999999999999999999999874 3368999999999999999999
Q ss_pred HHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 331 ARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 331 A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
|++.|+++.+ .+..+|..+...|.+.|++++|+.+|+++.+. .|+......++..+...|++++|..+++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9999999875 35679999999999999999999999999985 455555555556667789999999999888754
Q ss_pred cCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 408 FGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-----AEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 408 ~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-----~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
...+...+ .++..+...++.++|++.+++++...|+ ..+|..+...|...|++++|...++...++.+.
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 22333333 4777888889999999999997765553 478888999999999999999999999987654
No 30
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=3.4e-13 Score=132.55 Aligned_cols=222 Identities=12% Similarity=0.029 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCC--CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC--CCC----HHHHHHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKGV--KADASCFYTLFELCGNPKWYENAKKVHDYFLQSTI--RGD----LVLNNKVI 319 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~~--~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~--~pd----~~~y~~Li 319 (623)
.+..+...+...|++++|+++|++.+ ..+..+|..+..++...|++++|+++++++++... .++ ..+|..+.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 45577888999999999999996411 17788999999999999999999999999887532 122 58899999
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044791 320 EMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFI 399 (623)
Q Consensus 320 ~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~ 399 (623)
.+|.+.|++++|++.|+++.+.+.. ...+.+.|++++|+..|+++..... -+...+..+...+...|++++|..
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~ 160 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSDWPNAVK 160 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999999999999999998753222 3457778899999999999988521 245678888999999999999999
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 400 HFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 400 l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
.|+++... . ..+..+|..+..+|.+.|++++|+.+|++++...| +..+|..+..+|...|+.++|...++...++.
T Consensus 161 ~~~~a~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 161 AYTEMIKR-A-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-C-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 99999854 1 22567888999999999999999999999666555 47889999999999999999999999988876
No 31
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.52 E-value=4.2e-13 Score=131.86 Aligned_cols=218 Identities=11% Similarity=0.020 Sum_probs=185.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---C-------hHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---S-------MDSW 346 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~-------~~ty 346 (623)
...|..+...+...|++++|+++|+++++.. .+..+|..+..+|...|++++|++.|++..+. + ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3578889999999999999999999999987 78899999999999999999999999988652 1 4689
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHH
Q 044791 347 HLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLG 425 (623)
Q Consensus 347 n~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~ 425 (623)
..+...|...|++++|+..|+++.+. .|+. ..+.+.|++++|...++.+.. ..| +...+..+...|.
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY---VNPEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH---cCcchHHHHHHHHHHHH
Confidence 99999999999999999999999985 3453 346677889999999999884 233 4667888999999
Q ss_pred hcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcC
Q 044791 426 KCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKS 504 (623)
Q Consensus 426 k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~ 504 (623)
..|++++|+++|++++...| +..+|..+...|...|++++|...++...++.+.. ...+..+-..+.
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------------~~~~~~l~~~~~ 218 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF------------VRAYIRKATAQI 218 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHH------------HHHHHHHHHHHH
Confidence 99999999999999666445 57889999999999999999999999999886543 456777788888
Q ss_pred ccccccCCcccchHHHHHHHHHHH
Q 044791 505 RLVEFRNPTLYRDDEKLKALNQMK 528 (623)
Q Consensus 505 ~~~~~~~~~~~~~~eal~~~~~M~ 528 (623)
..|++ ++|++.|++..
T Consensus 219 ~~g~~--------~~A~~~~~~a~ 234 (258)
T 3uq3_A 219 AVKEY--------ASALETLDAAR 234 (258)
T ss_dssp HTTCH--------HHHHHHHHHHH
T ss_pred HHhhH--------HHHHHHHHHHH
Confidence 88887 69999886654
No 32
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.52 E-value=1.7e-12 Score=127.88 Aligned_cols=200 Identities=13% Similarity=-0.034 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGY 353 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~ 353 (623)
...|..+...+...|++++|+++|+++++.. ..+..++..+..+|.+.|++++|+++|+++.+ .+...|..+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 3567778888888888888888888888763 33677888888888888888888888887764 3455788888888
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHH
Q 044791 354 ADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFE 432 (623)
Q Consensus 354 ~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~ 432 (623)
...|++++|+.+|+++.+.+..| +...+..+..++...|++++|.++|+++.+. . .-+...+..+..+|...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-N-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHcCCHHH
Confidence 88888888888888887743455 4467777888888888888888888888754 1 2246677788888888888888
Q ss_pred HHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 433 AQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 433 A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
|.++|++++...| +...+..+...+...|+.++|.+.++.+.++.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 8888888655444 5567777888888888888888888888887654
No 33
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.50 E-value=5.7e-12 Score=126.38 Aligned_cols=222 Identities=11% Similarity=0.006 Sum_probs=191.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcCCCC-CHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKGVKA-DASCFYTLFELCGN----PKWYENAKKVHDYFLQSTIRGDLVLNNKVIEM 321 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~~~p-d~~ty~~Ll~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~ 321 (623)
..+..+...|...|++++|++.|++.+.+ +..++..|...|.. .+++++|+++|++..+.+ +...+..|..+
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 83 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 45567778889999999999999865544 45678889999999 999999999999999976 78899999999
Q ss_pred HHH----cCCHHHHHHHHHHhhcC-ChHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 044791 322 YGK----CGSMTDARRVFDHMADR-SMDSWHLMINGYAD----NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS-- 390 (623)
Q Consensus 322 y~k----~g~~~~A~~lf~~m~~~-~~~tyn~Li~~~~~----~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~-- 390 (623)
|.. .+++++|++.|++..+. +..++..|...|.. .+++++|+..|++..+.+ +..++..+...|..
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~ 160 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGR 160 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCC
Confidence 999 99999999999988765 55689999999999 999999999999999876 67788888888888
Q ss_pred --cCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHh----cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----c
Q 044791 391 --ADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGK----CGHLFEAQQFIEQKLPFEPTAEFWEALRNYARI----H 460 (623)
Q Consensus 391 --~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k----~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~----~ 460 (623)
.+++++|+..|++..+. + +...+..|..+|.. .+++++|+++|++++...+ ...+..|...|.. .
T Consensus 161 ~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~ 235 (273)
T 1ouv_A 161 GTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVT 235 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSS
T ss_pred CCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcc
Confidence 99999999999998854 3 45678888899999 9999999999999665443 7788888888888 8
Q ss_pred CChhHHHHHHHHHHhcCCC
Q 044791 461 GDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 461 g~~~~A~~~~~~~~~m~~~ 479 (623)
++.++|.+.++...++.+.
T Consensus 236 ~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 236 RNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp CCSTTHHHHHHHHHHHTCH
T ss_pred cCHHHHHHHHHHHHHcCCH
Confidence 9999999999999887543
No 34
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.50 E-value=2.4e-12 Score=123.60 Aligned_cols=200 Identities=12% Similarity=-0.041 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGY 353 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~ 353 (623)
...+..+...+...|++++|+++++++++.. +.+..++..+..+|...|++++|+++|+++.+ .+..+|..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3456777777777888888888888777753 33567777778888888888888888877654 2455777777788
Q ss_pred HHc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHH
Q 044791 354 ADN-GLGDEGLQLFEQMRKLGLQPN-EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLF 431 (623)
Q Consensus 354 ~~~-g~~eeA~~l~~eM~~~g~~Pd-~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e 431 (623)
... |++++|+.+|+++.+.+..|+ ..++..+..++...|++++|+..|+++.+. . .-+...+..+..+|.+.|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA-Q-PQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCCchHHHHHHHHHHHcCCHH
Confidence 888 888888888888777333343 466777777788888888888888877743 1 124566777777888888888
Q ss_pred HHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 432 EAQQFIEQKLPFEP--TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 432 ~A~~lf~~~m~~~P--d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
+|.++|++++...| +...+..+...+...|+.+.|...++.+.++.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPY 214 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC
Confidence 88888887554333 5566666777777888888777777777766544
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.50 E-value=8e-13 Score=128.84 Aligned_cols=187 Identities=17% Similarity=0.073 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHc--CCCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDK--GVKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYG 323 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~--~~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~ 323 (623)
..+..+...+.+.|++++|+..|++ ...| +...+..+..++.+.|++++|+..|++.++.. +-+...+..+..+|.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3445555566666666666666654 2233 34556666666666666666666666666643 224556666666666
Q ss_pred Hc-----------CCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 324 KC-----------GSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG 389 (623)
Q Consensus 324 k~-----------g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~ 389 (623)
+. |++++|+..|++..+ .+...|..+..+|...|++++|+..|++.++.. .+...+..+..+|.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 66 666666666665543 233456666666666666666666666666555 45556666666666
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 390 SADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 390 ~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
..|++++|+..|++..+. .| +...+..+..++.+.|++++|++.|++
T Consensus 163 ~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC-------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666666666666666532 23 344555556666666666666666655
No 36
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.49 E-value=6e-13 Score=132.44 Aligned_cols=243 Identities=8% Similarity=-0.080 Sum_probs=184.8
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCC--CC-CHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGV--KA-DASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~--~p-d~~ty~ 281 (623)
..|++++|++.|+++....... .+.....+..+...|...|++++|++.|++.+ .| +..+|.
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 81 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALT---------------DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFN 81 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCC---------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred ccchHHHHHHHHHHHHhccccc---------------CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHH
Confidence 5799999999999984421100 01123456688889999999999999997632 33 578899
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--CChHHHHHHHHHHHHcCCh
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD--RSMDSWHLMINGYADNGLG 359 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~--~~~~tyn~Li~~~~~~g~~ 359 (623)
.+..++...|++++|+++|+++++.. +.+..++..+..+|.+.|++++|+++|+++.+ ++...+..++..+...|++
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 160 (275)
T 1xnf_A 82 YLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE 160 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCH
Confidence 99999999999999999999999864 33678999999999999999999999999875 3334445555566778999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-----ccchhhHHHHHHhcCCHHHHH
Q 044791 360 DEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-----TEHYLGLVGVLGKCGHLFEAQ 434 (623)
Q Consensus 360 eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-----~~ty~~Li~~~~k~g~~e~A~ 434 (623)
++|+.+|++..... .++...+ .++..+...++.++|+..++.+.. ..++ ..+|..+..+|.+.|++++|.
T Consensus 161 ~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 235 (275)
T 1xnf_A 161 KQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSAT 235 (275)
T ss_dssp HHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHH
Confidence 99999998888753 3344444 467777888899999999988763 2231 577888999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 044791 435 QFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAE 470 (623)
Q Consensus 435 ~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~ 470 (623)
++|++++...|+. +.....++...|++++|.+.+
T Consensus 236 ~~~~~al~~~p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 236 ALFKLAVANNVHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHTTCCTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHhCCchh--HHHHHHHHHHHHHHHhhHHHH
Confidence 9999977777743 222345666778888666554
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.48 E-value=1.9e-12 Score=126.15 Aligned_cols=194 Identities=13% Similarity=0.066 Sum_probs=158.1
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHH
Q 044791 275 ADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMIN 351 (623)
Q Consensus 275 pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~ 351 (623)
++...+..+..++.+.|++++|+..|++.++.. +.+...+..+..+|.+.|++++|+..|++..+. +...|..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 456788899999999999999999999999864 336899999999999999999999999988753 4568999999
Q ss_pred HHHHc-----------CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhh
Q 044791 352 GYADN-----------GLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLG 419 (623)
Q Consensus 352 ~~~~~-----------g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~ 419 (623)
.|... |++++|+..|++.++. .| +..++..+..++...|++++|+..|++..+. . .+...+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~ 156 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHH
Confidence 99999 9999999999999986 44 5678889999999999999999999999976 4 67788999
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 044791 420 LVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMV 474 (623)
Q Consensus 420 Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~ 474 (623)
+..+|...|++++|+..|++++...| +...+..+...+...|+.++|...++...
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999777666 56788889999999999998887777653
No 38
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=5.8e-12 Score=123.98 Aligned_cols=200 Identities=10% Similarity=-0.054 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCC---CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKGV---KADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~~---~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k 324 (623)
.+..+...|...|++++|+++|++.+ ..+..++..+..++...|++++|+++++++++.. ..+..++..+..+|.+
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 34466778899999999999997532 3367789999999999999999999999999874 3378899999999999
Q ss_pred cCCHHHHHHHHHHhhc--C---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044791 325 CGSMTDARRVFDHMAD--R---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFI 399 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~--~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~ 399 (623)
.|++++|+++|+++.+ . +...|..+...|...|++++|+.+|+++.+... -+..++..+...+...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999876 2 234888999999999999999999999998642 357889999999999999999999
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHH
Q 044791 400 HFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWE 451 (623)
Q Consensus 400 l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~ 451 (623)
+++.+.+. ...+...+..+...|.+.|+.++|.+++++++...|+...+.
T Consensus 197 ~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 197 YYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 99998842 223566788888999999999999999999555556544443
No 39
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.46 E-value=2e-12 Score=126.09 Aligned_cols=201 Identities=13% Similarity=0.080 Sum_probs=131.0
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMING 352 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~ 352 (623)
...+|..+...+...|++++|+.+|+++++.. ..+..++..+..+|.+.|++++|+++|+++.+ .+...|..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 44566677777777778888888887777643 33577777777778888888888888877654 245577777777
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHH
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFE 432 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~ 432 (623)
|...|++++|+.+|+++.+.. ..+...+..+...+...|++++|+.+++++.+. ...+...+..+..+|.+.|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888877653 235667777777788888888888888877743 12245667777778888888888
Q ss_pred HHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 433 AQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 433 A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
|+++|++++...| +..+|..+..+|...|+.++|...++.+.++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 8888887554334 46677778888888888888888888887776553
No 40
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.45 E-value=1.2e-11 Score=118.73 Aligned_cols=204 Identities=11% Similarity=-0.031 Sum_probs=168.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcCC---CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKGV---KADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYG 323 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~~---~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~ 323 (623)
..+..+...+...|++++|+++|++.+ ..+..++..+..++...|++++|.++++++++.. ..+..++..+..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 455677888999999999999997522 2357789999999999999999999999999864 347889999999999
Q ss_pred Hc-CCHHHHHHHHHHhhc--CC---hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044791 324 KC-GSMTDARRVFDHMAD--RS---MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEA 397 (623)
Q Consensus 324 k~-g~~~~A~~lf~~m~~--~~---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A 397 (623)
.. |++++|+++|+++.+ .+ ...|..+..++...|++++|+..|+++.+... -+..++..+..++...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 99 999999999999877 32 45899999999999999999999999998642 2578899999999999999999
Q ss_pred HHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHH
Q 044791 398 FIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEAL 453 (623)
Q Consensus 398 ~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~L 453 (623)
.++++.+.+. .-..+...+..+...+...|+.++|..+++.+....|+...+..+
T Consensus 167 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 167 DYYFKKYQSR-VEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHHHH-HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 9999998864 211356667777888899999999999999844456665444433
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.42 E-value=5e-12 Score=125.80 Aligned_cols=228 Identities=16% Similarity=0.069 Sum_probs=183.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHcC--CCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHH
Q 044791 249 SVADLARLCQEGKVKEAIELMDKG--VKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD--LVLNNKVIEMYG 323 (623)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~l~~~~--~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~~y~~Li~~y~ 323 (623)
...+...+...|++++|+.+|++. ..| +..++..+..++...|++++|++.++++++.+-.++ ..+|..+..+|.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 345667888999999999999763 334 344788899999999999999999999998442222 456899999999
Q ss_pred HcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044791 324 KCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIH 400 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l 400 (623)
+.|++++|++.|++..+ .+..+|..+...|...|++++|+..|++..+.. .-+..+|..+...+...+++++|++.
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998875 355699999999999999999999999998762 23566777777344455699999999
Q ss_pred HHHHHhhcCCCC-CccchhhHHHHHHhcCC---HHHHHHHHHhhCCC---CCC------HHHHHHHHHHHHHcCChhHHH
Q 044791 401 FESMKSEFGISP-GTEHYLGLVGVLGKCGH---LFEAQQFIEQKLPF---EPT------AEFWEALRNYARIHGDIDLED 467 (623)
Q Consensus 401 ~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~---~e~A~~lf~~~m~~---~Pd------~~ty~~Li~a~~~~g~~~~A~ 467 (623)
|+++.+. .| +...+..+..++...|+ .++|...|++++.. .|+ ..+|..|...|...|++++|.
T Consensus 165 ~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 165 FVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999854 34 35677778888888888 77888888884432 244 257888888999999999999
Q ss_pred HHHHHHHhcCCCC
Q 044791 468 HAEELMVDLDPSK 480 (623)
Q Consensus 468 ~~~~~~~~m~~~~ 480 (623)
+.++...++.|.+
T Consensus 242 ~~~~~al~~~p~~ 254 (272)
T 3u4t_A 242 AAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHHCTTC
T ss_pred HHHHHHHhcCccH
Confidence 9999999988765
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.41 E-value=3.9e-12 Score=124.02 Aligned_cols=202 Identities=12% Similarity=0.104 Sum_probs=155.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcC--CCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKG--VKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYG 323 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~--~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~ 323 (623)
..+..+...+...|++++|+.+|++. ..| +..++..+..++...|++++|+++++++++.. ..+..++..+..+|.
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYV 102 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHH
Confidence 34456677788999999999999763 233 57789999999999999999999999999874 347899999999999
Q ss_pred HcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044791 324 KCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIH 400 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l 400 (623)
+.|++++|+++|+++.+ .+...|..+...+.+.|++++|+.+|+++.+.. ..+..++..+...+...|++++|+.+
T Consensus 103 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998864 456689999999999999999999999999763 23678889999999999999999999
Q ss_pred HHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHH
Q 044791 401 FESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-AEFWEA 452 (623)
Q Consensus 401 ~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-~~ty~~ 452 (623)
|+++... ...+..++..+..+|.+.|++++|.++|++++...|+ ...+..
T Consensus 182 ~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~ 232 (243)
T 2q7f_A 182 FAAVTEQ--DPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHA 232 (243)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHH
Confidence 9999854 2235678889999999999999999999996665564 334433
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.39 E-value=1.5e-11 Score=130.82 Aligned_cols=228 Identities=11% Similarity=0.028 Sum_probs=188.5
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHcC--CCC-CHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 246 LPPSVADLARLCQEGKVKEAIELMDKG--VKA-DASCFYTLFELCGNPKW-YENAKKVHDYFLQSTIRGDLVLNNKVIEM 321 (623)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~A~~l~~~~--~~p-d~~ty~~Ll~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~~y~~Li~~ 321 (623)
...+..+...+.+.|++++|+++|++. +.| +..+|+.+..++...|+ +++|++.|+++++... -+..+|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
Confidence 345567777888999999999999873 345 45789999999999997 9999999999999753 378999999999
Q ss_pred HHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHH
Q 044791 322 YGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS-ADAIEEA 397 (623)
Q Consensus 322 y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~-~g~~e~A 397 (623)
|.+.|++++|+..|+++.+ .+...|..+..++.+.|++++|+..|+++++.... +...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence 9999999999999999876 45669999999999999999999999999987433 67899999999998 6665777
Q ss_pred -----HHHHHHHHhhcCCCC-CccchhhHHHHHHhcC--CHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcC-------
Q 044791 398 -----FIHFESMKSEFGISP-GTEHYLGLVGVLGKCG--HLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHG------- 461 (623)
Q Consensus 398 -----~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g--~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g------- 461 (623)
++.|++.++ +.| +...|+.+..+|.+.| ++++|+++++++ ...| +...+..|...|.+.|
T Consensus 255 ~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 255 VLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 477888774 456 4668888888999988 689999999984 6556 4578888999998874
Q ss_pred --ChhHHHHHHHHH-HhcCCC
Q 044791 462 --DIDLEDHAEELM-VDLDPS 479 (623)
Q Consensus 462 --~~~~A~~~~~~~-~~m~~~ 479 (623)
.+++|.++++.+ .++++.
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~ 351 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTI 351 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHHHhCch
Confidence 258888888888 676543
No 44
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.38 E-value=1.5e-12 Score=137.98 Aligned_cols=265 Identities=13% Similarity=0.074 Sum_probs=200.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHcC--CCCC-H----HHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CC-CCCHHHHHH
Q 044791 250 VADLARLCQEGKVKEAIELMDKG--VKAD-A----SCFYTLFELCGNPKWYENAKKVHDYFLQS----TI-RGDLVLNNK 317 (623)
Q Consensus 250 ~~li~~~~~~g~~~~A~~l~~~~--~~pd-~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~-~pd~~~y~~ 317 (623)
..+...+...|++++|+.+|++. +.|+ . .+|..+..++...|++++|+++++++++. +- .....++..
T Consensus 52 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 52 ALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 35566788999999999999752 2333 2 47888999999999999999999988764 11 123578889
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcC---------ChHHHHHHHHHHHHcCC-----------------hHHHHHHHHHHHH
Q 044791 318 VIEMYGKCGSMTDARRVFDHMADR---------SMDSWHLMINGYADNGL-----------------GDEGLQLFEQMRK 371 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~~---------~~~tyn~Li~~~~~~g~-----------------~eeA~~l~~eM~~ 371 (623)
+..+|...|++++|++.|++..+. ...+|..+...|...|+ +++|+..|++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999999987542 22388999999999999 9999999988764
Q ss_pred c----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----ccchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 372 L----GLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG----TEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 372 ~----g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~----~~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
. +-.+ ...++..+...|...|++++|+..|++..+...-..+ ..++..+..+|...|++++|+++|++++.
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 1111 2357888889999999999999999988753211112 23788899999999999999999998543
Q ss_pred CCC---C----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCccc
Q 044791 443 FEP---T----AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLY 515 (623)
Q Consensus 443 ~~P---d----~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~ 515 (623)
..+ + ..++..+...|...|++++|...++...++....... .-....+..+-..+...|++
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~la~~~~~~g~~------ 359 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR------IGEARACWSLGNAHSAIGGH------ 359 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHHHHTTCH------
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh------HHHHHHHHHHHHHHHHhccH------
Confidence 222 1 4678888999999999999999999887764332110 01133566677778888887
Q ss_pred chHHHHHHHHHHH
Q 044791 516 RDDEKLKALNQMK 528 (623)
Q Consensus 516 ~~~eal~~~~~M~ 528 (623)
++|+++|++..
T Consensus 360 --~~A~~~~~~al 370 (411)
T 4a1s_A 360 --ERALKYAEQHL 370 (411)
T ss_dssp --HHHHHHHHHHH
T ss_pred --HHHHHHHHHHH
Confidence 69999886654
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.37 E-value=2.1e-10 Score=114.86 Aligned_cols=223 Identities=10% Similarity=-0.004 Sum_probs=183.9
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcC-ChHHHHHHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK----CGSMTDARRVFDHMADR-SMDSWHLMI 350 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k----~g~~~~A~~lf~~m~~~-~~~tyn~Li 350 (623)
+..++..+...+...|++++|+++|++..+.+ +..++..|..+|.. .+++++|++.|++..+. +..++..|.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 55678889999999999999999999998843 67888999999999 99999999999988765 566899999
Q ss_pred HHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCCccchhhHHH
Q 044791 351 NGYAD----NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS----ADAIEEAFIHFESMKSEFGISPGTEHYLGLVG 422 (623)
Q Consensus 351 ~~~~~----~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~----~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~ 422 (623)
..|.. .+++++|+..|++..+.+ +..++..+...|.. .+++++|++.|++..+. + +...+..|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 78889999999999 99999999999999864 4 5667788888
Q ss_pred HHHh----cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchh
Q 044791 423 VLGK----CGHLFEAQQFIEQKLPFEPTAEFWEALRNYARI----HGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKR 494 (623)
Q Consensus 423 ~~~k----~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~----~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~ 494 (623)
.|.. .+++++|+++|++++.. -+...+..|...|.. .++.++|...++...+..+ ..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--------------~~ 219 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--------------GG 219 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--------------HH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--------------HH
Confidence 8888 99999999999995553 467888889999999 9999999999999888632 22
Q ss_pred hHHHHhhhcCc----cccccCCcccchHHHHHHHHHHHHCC
Q 044791 495 TAISILDGKSR----LVEFRNPTLYRDDEKLKALNQMKEST 531 (623)
Q Consensus 495 t~~~li~~~~~----~~~~~~~~~~~~~eal~~~~~M~~~G 531 (623)
.+..+-..+.. .+++ ++|+++|++-.+.|
T Consensus 220 a~~~l~~~~~~g~~~~~~~--------~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNE--------KQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCS--------TTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccCH--------HHHHHHHHHHHHcC
Confidence 33333333333 5555 58888886665554
No 46
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.37 E-value=5.4e-12 Score=132.62 Aligned_cols=268 Identities=14% Similarity=0.090 Sum_probs=201.9
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcC--CCCC-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCC-CHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKG--VKAD-----ASCFYTLFELCGNPKWYENAKKVHDYFLQS----TIRG-DLVL 314 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~--~~pd-----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~~ 314 (623)
..+..+...+...|++++|+.+|++. +.|+ ..+|..+..++...|++++|+..++++++. +-.+ ...+
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34456677888999999999999752 2333 357888999999999999999999987653 2122 2567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcC-----C----hHHHHHHHHHHHHcCC--------------------hHHHHHH
Q 044791 315 NNKVIEMYGKCGSMTDARRVFDHMADR-----S----MDSWHLMINGYADNGL--------------------GDEGLQL 365 (623)
Q Consensus 315 y~~Li~~y~k~g~~~~A~~lf~~m~~~-----~----~~tyn~Li~~~~~~g~--------------------~eeA~~l 365 (623)
+..+..+|...|++++|+..|++..+. + ..+|..+...|...|+ +++|+..
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 888999999999999999999987642 2 3389999999999999 9999999
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----ccchhhHHHHHHhcCCHHHHHHH
Q 044791 366 FEQMRKL----GLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG----TEHYLGLVGVLGKCGHLFEAQQF 436 (623)
Q Consensus 366 ~~eM~~~----g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~----~~ty~~Li~~~~k~g~~e~A~~l 436 (623)
|++..+. +-.+ ...++..+...|...|++++|...+++..+...-..+ ..+|..+...|...|++++|+.+
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9887642 1111 2357888889999999999999999988753221222 23788889999999999999999
Q ss_pred HHhhCCCC---CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccc
Q 044791 437 IEQKLPFE---PT----AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEF 509 (623)
Q Consensus 437 f~~~m~~~---Pd----~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~ 509 (623)
|++++.+. .+ ..++..+...|...|++++|...++...++....... .....++..+-..+...|++
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDR------IGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHHHHcCCH
Confidence 99854321 12 4678888999999999999999998887764432110 01134556667777888887
Q ss_pred cCCcccchHHHHHHHHHHH
Q 044791 510 RNPTLYRDDEKLKALNQMK 528 (623)
Q Consensus 510 ~~~~~~~~~eal~~~~~M~ 528 (623)
++|+++|++..
T Consensus 324 --------~~A~~~~~~al 334 (406)
T 3sf4_A 324 --------DQAMHFAEKHL 334 (406)
T ss_dssp --------HHHHHHHHHHH
T ss_pred --------HHHHHHHHHHH
Confidence 69999985543
No 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.37 E-value=2.6e-11 Score=120.54 Aligned_cols=240 Identities=8% Similarity=-0.024 Sum_probs=184.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--C----hHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR--S----MDSWHLMIN 351 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~--~----~~tyn~Li~ 351 (623)
..+..+...+...|++++|+++|+++++... -+..++..+..+|.+.|++++|+..|++..+. + ..+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 3456677889999999999999999998642 35568889999999999999999999998762 2 225899999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCH
Q 044791 352 GYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHL 430 (623)
Q Consensus 352 ~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~ 430 (623)
.|...|++++|+..|++..+.... +..++..+...|...|++++|+..|++..+ +.| +...|..+...+...+++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIR---PTTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCC---SSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhh---cCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986432 567899999999999999999999998883 345 455666666244445699
Q ss_pred HHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCC---hhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCcc
Q 044791 431 FEAQQFIEQKLPFEPT-AEFWEALRNYARIHGD---IDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRL 506 (623)
Q Consensus 431 e~A~~lf~~~m~~~Pd-~~ty~~Li~a~~~~g~---~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~ 506 (623)
++|++.|++++...|+ ...+..+..++...|+ .++|...++...++....... ........|..+-..+...
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~ 234 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK----YKDELIEANEYIAYYYTIN 234 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGG----GHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhccccc----chHHHHHHHHHHHHHHHHc
Confidence 9999999997766665 6788888888888888 888888888887765332110 0000124566666777778
Q ss_pred ccccCCcccchHHHHHHHHHHHHCCcccCc
Q 044791 507 VEFRNPTLYRDDEKLKALNQMKESTYVPDT 536 (623)
Q Consensus 507 ~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~ 536 (623)
|++ ++|+++|++..+. .|+.
T Consensus 235 ~~~--------~~A~~~~~~al~~--~p~~ 254 (272)
T 3u4t_A 235 RDK--------VKADAAWKNILAL--DPTN 254 (272)
T ss_dssp TCH--------HHHHHHHHHHHHH--CTTC
T ss_pred CCH--------HHHHHHHHHHHhc--CccH
Confidence 877 6999999777653 3553
No 48
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.36 E-value=2.3e-12 Score=130.88 Aligned_cols=265 Identities=15% Similarity=0.107 Sum_probs=199.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHcC--CCCC-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHH
Q 044791 251 ADLARLCQEGKVKEAIELMDKG--VKAD-----ASCFYTLFELCGNPKWYENAKKVHDYFLQS----TIRG-DLVLNNKV 318 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~--~~pd-----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~~y~~L 318 (623)
.....+...|++++|+.+|++. ..|+ ...+..+..++...|++++|+++++++++. +..+ ...++..+
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 4566788999999999999752 2333 367889999999999999999999987653 2121 25678889
Q ss_pred HHHHHHcCCHHHHHHHHHHhhc-----CC----hHHHHHHHHHHHHcCC--------------------hHHHHHHHHHH
Q 044791 319 IEMYGKCGSMTDARRVFDHMAD-----RS----MDSWHLMINGYADNGL--------------------GDEGLQLFEQM 369 (623)
Q Consensus 319 i~~y~k~g~~~~A~~lf~~m~~-----~~----~~tyn~Li~~~~~~g~--------------------~eeA~~l~~eM 369 (623)
...|...|++++|+..|++..+ .+ ..+|..+...|...|+ +++|+..|++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999998754 22 2388899999999999 99999999887
Q ss_pred HHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----ccchhhHHHHHHhcCCHHHHHHHHHhh
Q 044791 370 RKL----GLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG----TEHYLGLVGVLGKCGHLFEAQQFIEQK 440 (623)
Q Consensus 370 ~~~----g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~----~~ty~~Li~~~~k~g~~e~A~~lf~~~ 440 (623)
.+. +..+ ...++..+...+...|++++|...+++..+...-..+ ..++..+...|...|++++|.++|+++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 642 2111 2347788888999999999999999988743211111 337888889999999999999999984
Q ss_pred CCCC---CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCc
Q 044791 441 LPFE---PT----AEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPT 513 (623)
Q Consensus 441 m~~~---Pd----~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~ 513 (623)
+.+. .+ ..++..+...|...|++++|...++...++.+..... .....++..+-..+.+.|++
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~---- 319 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR------IGEGRACWSLGNAYTALGNH---- 319 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH------HHHHHHHHHHHHHHHHHTCH----
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc------HHHHHHHHHHHHHHHHcCCh----
Confidence 4321 12 4678888889999999999999998887764332110 01133556777778888887
Q ss_pred ccchHHHHHHHHHHHH
Q 044791 514 LYRDDEKLKALNQMKE 529 (623)
Q Consensus 514 ~~~~~eal~~~~~M~~ 529 (623)
++|++++++..+
T Consensus 320 ----~~A~~~~~~a~~ 331 (338)
T 3ro2_A 320 ----DQAMHFAEKHLE 331 (338)
T ss_dssp ----HHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHH
Confidence 699999977654
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.36 E-value=1e-11 Score=132.14 Aligned_cols=233 Identities=8% Similarity=0.022 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHhhc---CChHHHHHHHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS-MTDARRVFDHMAD---RSMDSWHLMING 352 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~-~~~A~~lf~~m~~---~~~~tyn~Li~~ 352 (623)
...|..+..++.+.|++++|+++++++++.. +-+..+|+.+..+|.+.|+ +++|+..|+++.+ .+...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3568888889999999999999999999964 3368999999999999997 9999999999876 355699999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHh-cCCH
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGK-CGHL 430 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k-~g~~ 430 (623)
|...|++++|+..|+++++.... +..+|..+..++...|++++|+..|+++++. .| +...|+.+..+|.+ .|..
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999986432 6789999999999999999999999999953 45 57789999999999 6665
Q ss_pred HHH-----HHHHHhhCCCCC-CHHHHHHHHHHHHHcC--ChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhh
Q 044791 431 FEA-----QQFIEQKLPFEP-TAEFWEALRNYARIHG--DIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDG 502 (623)
Q Consensus 431 e~A-----~~lf~~~m~~~P-d~~ty~~Li~a~~~~g--~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~ 502 (623)
++| ++.|++++.+.| +...|..+...+...| +.++|.+.++.+ +..+ .+...+..+...
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p------------~~~~al~~La~~ 318 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH------------SSPYLIAFLVDI 318 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC------------CCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC------------CCHHHHHHHHHH
Confidence 777 588888777677 5678999988888888 578776666655 3322 234566677777
Q ss_pred cCccccccCCcccc-hHHHHHHHHHH
Q 044791 503 KSRLVEFRNPTLYR-DDEKLKALNQM 527 (623)
Q Consensus 503 ~~~~~~~~~~~~~~-~~eal~~~~~M 527 (623)
+.+.++....+..+ .++|+++|+++
T Consensus 319 ~~~~~~~~~~~~~~~~~~A~~~~~~l 344 (382)
T 2h6f_A 319 YEDMLENQCDNKEDILNKALELCEIL 344 (382)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHhcccccchHHHHHHHHHHHHHH
Confidence 76664110000001 26899999877
No 50
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.35 E-value=1.9e-12 Score=137.33 Aligned_cols=259 Identities=10% Similarity=-0.003 Sum_probs=197.1
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCC--------CC-
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGV--------KA- 275 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~--------~p- 275 (623)
..|++++|+..|+++... .|+... .....+..+...|...|++++|++.|++.+ .+
T Consensus 60 ~~g~~~~A~~~~~~al~~--~~~~~~-------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 60 NAGDCRAGVAFFQAAIQA--GTEDLR-------------TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCSCHH-------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhCcHHHHHHHHHHHHHh--cccChh-------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 889999999999988441 111000 001345677888999999999999986522 12
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCC-----------------HHHHHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQS----TI-RGDLVLNNKVIEMYGKCGS-----------------MTDARR 333 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~-~pd~~~y~~Li~~y~k~g~-----------------~~~A~~ 333 (623)
...++..+..+|...|++++|++.++++++. +- .....++..+..+|...|+ +++|++
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 2357888999999999999999999988764 11 1135688899999999999 999999
Q ss_pred HHHHhhcC-----C----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHH
Q 044791 334 VFDHMADR-----S----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ-PN----EQTFLAVFSACGSADAIEEAFI 399 (623)
Q Consensus 334 lf~~m~~~-----~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~-Pd----~~ty~~li~a~~~~g~~e~A~~ 399 (623)
.|++..+. + ..+|..+...|...|++++|+..|++..+.... .+ ..++..+..+|...|++++|..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 99876531 1 237888999999999999999999998753211 12 2378888999999999999999
Q ss_pred HHHHHHhhcCCCC----CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC---C----HHHHHHHHHHHHHcCChhHHHH
Q 044791 400 HFESMKSEFGISP----GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP---T----AEFWEALRNYARIHGDIDLEDH 468 (623)
Q Consensus 400 l~~~m~~~~g~~p----~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P---d----~~ty~~Li~a~~~~g~~~~A~~ 468 (623)
.|++......-.. ...++..+..+|...|++++|.++|++++.+.+ + ..++..+...|...|+.++|..
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 9998875321111 246778889999999999999999998544211 1 3578888899999999999999
Q ss_pred HHHHHHhcCC
Q 044791 469 AEELMVDLDP 478 (623)
Q Consensus 469 ~~~~~~~m~~ 478 (623)
.++...++..
T Consensus 365 ~~~~al~~~~ 374 (411)
T 4a1s_A 365 YAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHh
Confidence 9998887643
No 51
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.35 E-value=2.4e-10 Score=134.94 Aligned_cols=272 Identities=15% Similarity=0.086 Sum_probs=164.9
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCc-cCCcc-ccccC-----CCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCCCCH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQ-LNNVP-NNMNQ-----CPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKADA 277 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~-~~~~~-~~~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~pd~ 277 (623)
..|.+++|..+|++... .+. ..... .+.+. .........++..+..++...|++++|++.|.+. -|.
T Consensus 1061 ~lglyEEAf~IYkKa~~----~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~ 1134 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFDV----NTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDP 1134 (1630)
T ss_pred hCCCHHHHHHHHHHcCC----HHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CCh
Confidence 78999999999997621 110 00000 00000 0001123445556666666777777777777553 455
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNG 357 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g 357 (623)
..|..++.+|.+.|++++|+++|...++.. ++....+.++.+|++.+++++.... +...+...|..+...|...|
T Consensus 1135 say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f---I~~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1135 SSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF---INGPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH---HhCCCHHHHHHHHHHHHhcC
Confidence 566667777777777777777776655532 3333334466677777666643332 23445556666667777777
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHH
Q 044791 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFI 437 (623)
Q Consensus 358 ~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf 437 (623)
++++|..+|... ..|..+..+|++.|++++|.+.+++.. +..+|..+..+|...|++..|..+.
T Consensus 1210 ~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWkev~~acve~~Ef~LA~~cg 1273 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDGKEFRLAQMCG 1273 (1630)
T ss_pred CHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 777777777663 366677777777777777777766542 3456666666677777777776666
Q ss_pred HhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccch
Q 044791 438 EQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRD 517 (623)
Q Consensus 438 ~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~ 517 (623)
.. +. -+...+..++..|.+.|.+++|...++....+++.+.. ..|....+.+..+-++.
T Consensus 1274 l~-Ii--v~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~g----------mftELaiLyaKy~pekl-------- 1332 (1630)
T 1xi4_A 1274 LH-IV--VHADELEELINYYQDRGYFEELITMLEAALGLERAHMG----------MFTELAILYSKFKPQKM-------- 1332 (1630)
T ss_pred Hh-hh--cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhH----------HHHHHHHHHHhCCHHHH--------
Confidence 54 32 34455667888888888888888888888777755433 44445555555555544
Q ss_pred HHHHHHH
Q 044791 518 DEKLKAL 524 (623)
Q Consensus 518 ~eal~~~ 524 (623)
.|++++|
T Consensus 1333 mEhlk~f 1339 (1630)
T 1xi4_A 1333 REHLELF 1339 (1630)
T ss_pred HHHHHHH
Confidence 3666666
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.34 E-value=4e-11 Score=112.46 Aligned_cols=167 Identities=12% Similarity=0.083 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMING 352 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~ 352 (623)
+...|..|..++.+.|++++|++.|++.++.. +-+..++..+..+|.+.|++++|+..++.... .+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 44566777777777777777777777776653 22566677777777777777777777766543 234466666666
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHH
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLF 431 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e 431 (623)
+...+++++|...+.+..+... -+..++..+..++.+.|++++|++.|++..+. .| +..+|..+..+|.+.|+++
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISI---KPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHh---cchhhhHHHHHHHHHHHCCCHH
Confidence 7777777777777777665422 24556666667777777777777777766632 33 4556666777777777777
Q ss_pred HHHHHHHhhCCCCCCH
Q 044791 432 EAQQFIEQKLPFEPTA 447 (623)
Q Consensus 432 ~A~~lf~~~m~~~Pd~ 447 (623)
+|++.|++++++.|+.
T Consensus 159 ~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCccC
Confidence 7777777755555543
No 53
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.34 E-value=2.1e-10 Score=135.40 Aligned_cols=297 Identities=10% Similarity=0.020 Sum_probs=149.7
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 044791 252 DLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDA 331 (623)
Q Consensus 252 li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A 331 (623)
+...+...|.+++|+.+|++.-.. ....+.++. ..+++++|.++.++. -+..+|..+..++.+.|++++|
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~-~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVN-TSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCH-HHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 445566778888888888764321 122233332 445677777766643 1355666777777777777777
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 044791 332 RRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGIS 411 (623)
Q Consensus 332 ~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~ 411 (623)
+..|.+. .|...|.-++.+|.+.|++++|+++|...++.. ++....+.++.+|++.+++++...+. . .
T Consensus 1125 IdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~----~ 1192 (1630)
T 1xi4_A 1125 IDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N----G 1192 (1630)
T ss_pred HHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h----C
Confidence 7777543 556666667777777777777777776555432 22222223555555555555322221 1 1
Q ss_pred CCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC-----C-C---
Q 044791 412 PGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK-----A-D--- 482 (623)
Q Consensus 412 p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~-----~-~--- 482 (623)
++...|..+.+.|...|++++|..+|.. . ..|..+..+|++.|+++.|.+++++......-. . .
T Consensus 1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~k-A------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNN-V------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKE 1265 (1630)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHh-h------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhH
Confidence 1223333445555555555555555555 1 245555555555555554444444432211000 0 0
Q ss_pred --CCCCC--CCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhH
Q 044791 483 --PKKIP--TPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSER 558 (623)
Q Consensus 483 --~~~~~--~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~ 558 (623)
..... ....+...+..++..|.+.|.| +||+.+++. |+.-+..+.... + .........+.++
T Consensus 1266 f~LA~~cgl~Iiv~~deLeeli~yYe~~G~f--------eEAI~LlE~----aL~LeraH~gmf-t-ELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1266 FRLAQMCGLHIVVHADELEELINYYQDRGYF--------EELITMLEA----ALGLERAHMGMF-T-ELAILYSKFKPQK 1331 (1630)
T ss_pred HHHHHHHHHhhhcCHHHHHHHHHHHHHcCCH--------HHHHHHHHH----HhccChhHhHHH-H-HHHHHHHhCCHHH
Confidence 00000 0002233455667777777777 688888733 332232221110 0 0001123356788
Q ss_pred HHHHHhcccCC-CCCh-------hHHHhh----HhhhcchhHHHH
Q 044791 559 LAIAYGLISTP-ARTP-------LRIIKN----LRVCGDCHNAIK 591 (623)
Q Consensus 559 l~~A~~ll~~m-~~~~-------~~i~~~----l~~~g~~~~a~~ 591 (623)
+.++.+++.+- ...+ ..+|.. |...|+.+.|..
T Consensus 1332 lmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1332 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 88888877643 2211 112322 356677777764
No 54
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.34 E-value=1.5e-09 Score=118.66 Aligned_cols=334 Identities=9% Similarity=-0.021 Sum_probs=238.0
Q ss_pred CCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHH----cCCHHHHHHHHHcCCCC-CHHHH
Q 044791 206 NQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQ----EGKVKEAIELMDKGVKA-DASCF 280 (623)
Q Consensus 206 ~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~~~~p-d~~ty 280 (623)
.+++++|+..|++....+ .......|...|.. .+++++|++.|++.... +...+
T Consensus 56 ~~~~~~A~~~~~~a~~~~---------------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---------------------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CcCHHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 789999999999773210 12345567777888 89999999999763332 56778
Q ss_pred HHHHHHHhC----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHhhcC-ChHHHHHHHH
Q 044791 281 YTLFELCGN----PKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK----CGSMTDARRVFDHMADR-SMDSWHLMIN 351 (623)
Q Consensus 281 ~~Ll~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k----~g~~~~A~~lf~~m~~~-~~~tyn~Li~ 351 (623)
..|...|.. .+++++|+++|++..+.| +...+..|..+|.. .++.++|++.|++..+. +..++..|..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888887 789999999999998876 67888889999988 78999999999987654 5668888988
Q ss_pred HHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCCccchhhHHHH
Q 044791 352 GYAD----NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS----ADAIEEAFIHFESMKSEFGISPGTEHYLGLVGV 423 (623)
Q Consensus 352 ~~~~----~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~----~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~ 423 (623)
.|.. .+++++|+..|++..+.| +..++..|...|.. .++.++|..+|+...+. + +...+..|..+
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 264 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-G---NSIAQFRLGYI 264 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-T---CHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHH
Confidence 8988 899999999999999875 56778888888876 78999999999988753 2 45566677777
Q ss_pred HHh----cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchh
Q 044791 424 LGK----CGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIH-----GDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKR 494 (623)
Q Consensus 424 ~~k----~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~-----g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~ 494 (623)
|.. .++.++|+++|+++.. .-+...+..|...|... ++.++|...++...+... ..
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~-~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~--------------~~ 329 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAE-QGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD--------------AT 329 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC--------------HH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC--------------HH
Confidence 877 8999999999999555 34667778888888887 899999999988877531 12
Q ss_pred hHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHH----HhHHHHHHhcccCCC
Q 044791 495 TAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYH----SERLAIAYGLISTPA 570 (623)
Q Consensus 495 t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~----~g~l~~A~~ll~~m~ 570 (623)
.+..+-..+...|. ..+.++|+++|++..+.|. . .+....+.++.. .+..++|+.++..-.
T Consensus 330 a~~~lg~~y~~~g~-----~~~~~~A~~~~~~a~~~~~---~-------~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~ 394 (490)
T 2xm6_A 330 AQANLGAIYFRLGS-----EEEHKKAVEWFRKAAAKGE---K-------AAQFNLGNALLQGKGVKKDEQQAAIWMRKAA 394 (490)
T ss_dssp HHHHHHHHHHHSCC-----HHHHHHHHHHHHHHHHTTC---H-------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-----cccHHHHHHHHHHHHHCCC---H-------HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 22222222222120 0122689999987776642 1 122222234444 466667766665421
Q ss_pred --CChhH---HHhhHhh----hcchhHHHHHHHHHhCCc
Q 044791 571 --RTPLR---IIKNLRV----CGDCHNAIKIMSRIVGRE 600 (623)
Q Consensus 571 --~~~~~---i~~~l~~----~g~~~~a~~l~~~~~~~~ 600 (623)
..+.. +-..+.. .+|.++|.+.+.+..+.+
T Consensus 395 ~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 395 EQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 11111 1112222 578888888877766544
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.34 E-value=7.8e-12 Score=126.95 Aligned_cols=260 Identities=10% Similarity=-0.019 Sum_probs=195.0
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCC--------CC-
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGV--------KA- 275 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~--------~p- 275 (623)
..|++++|+..|+++... .|+... .....+..+...|...|++++|++++++.+ .+
T Consensus 17 ~~g~~~~A~~~~~~al~~--~~~~~~-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 17 KSGDCRAGVSFFEAAVQV--GTEDLK-------------TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCSCHH-------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HhccHHHHHHHHHHHHhh--CcccHH-------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH
Confidence 689999999999988441 111000 012355677888999999999999986421 22
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------HHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTI-RGD----LVLNNKVIEMYGKCGS--------------------MTD 330 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~~y~~Li~~y~k~g~--------------------~~~ 330 (623)
...++..+..++...|++++|++.+++.++... ..+ ..++..+...|...|+ +++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 245788899999999999999999998876411 122 4588889999999999 999
Q ss_pred HHHHHHHhhcC-----C----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHH
Q 044791 331 ARRVFDHMADR-----S----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGL-QPN----EQTFLAVFSACGSADAIEE 396 (623)
Q Consensus 331 A~~lf~~m~~~-----~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~-~Pd----~~ty~~li~a~~~~g~~e~ 396 (623)
|++.|++..+. + ..+|..+...+...|++++|+..|++..+... ..+ ..++..+...+...|++++
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 241 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 241 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999876431 2 23788899999999999999999999875311 111 3478888899999999999
Q ss_pred HHHHHHHHHhhcCCCCC----ccchhhHHHHHHhcCCHHHHHHHHHhhCCCC---CC----HHHHHHHHHHHHHcCChhH
Q 044791 397 AFIHFESMKSEFGISPG----TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE---PT----AEFWEALRNYARIHGDIDL 465 (623)
Q Consensus 397 A~~l~~~m~~~~g~~p~----~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~---Pd----~~ty~~Li~a~~~~g~~~~ 465 (623)
|..++++......-..+ ..++..+...|...|++++|..+|++++... .+ ..++..+...|...|++++
T Consensus 242 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 242 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999988743211112 4577788899999999999999999854321 12 3577888999999999999
Q ss_pred HHHHHHHHHhcCCC
Q 044791 466 EDHAEELMVDLDPS 479 (623)
Q Consensus 466 A~~~~~~~~~m~~~ 479 (623)
|...++...++...
T Consensus 322 A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 322 AMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998887543
No 56
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=2.1e-11 Score=123.12 Aligned_cols=235 Identities=12% Similarity=0.095 Sum_probs=168.2
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHcCCC----------C-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------C
Q 044791 245 VLPPSVADLARLCQEGKVKEAIELMDKGVK----------A-DASCFYTLFELCGNPKWYENAKKVHDYFLQS------T 307 (623)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~~----------p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~------g 307 (623)
....+..+...|...|++++|+.+|++.+. + ...++..+..++...|++++|+++++++++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456677888899999999999999965322 2 2456888999999999999999999998875 2
Q ss_pred CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc---
Q 044791 308 IRG-DLVLNNKVIEMYGKCGSMTDARRVFDHMADR-----------SMDSWHLMINGYADNGLGDEGLQLFEQMRKL--- 372 (623)
Q Consensus 308 ~~p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-----------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~--- 372 (623)
-.+ ...++..+..+|...|++++|+++|+++.+. ...+|..+...|...|++++|+.+|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 222 3678899999999999999999999987642 2237888999999999999999999999865
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc------CCCCCccchh-------hHHHHHHhcCCHHHHHH
Q 044791 373 ---GLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEF------GISPGTEHYL-------GLVGVLGKCGHLFEAQQ 435 (623)
Q Consensus 373 ---g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~------g~~p~~~ty~-------~Li~~~~k~g~~e~A~~ 435 (623)
+..| ...++..+..+|...|++++|.++|+++.... ...+...... .+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 2233 34578888999999999999999999988531 1222222222 22233334455556666
Q ss_pred HHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 436 FIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 436 lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
.+++.....| +..+|..|..+|...|++++|.+.++...++.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 6666333334 3468889999999999999999999998887554
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.32 E-value=7.7e-12 Score=131.47 Aligned_cols=259 Identities=10% Similarity=-0.029 Sum_probs=196.2
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCC--------CCC
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGV--------KAD 276 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~--------~pd 276 (623)
..|++++|+..|+++... .|+... .....+..+...|...|++++|+..|++.+ .+.
T Consensus 21 ~~g~~~~A~~~~~~al~~--~~~~~~-------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 21 KSGDCRAGVSFFEAAVQV--GTEDLK-------------TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCSCHH-------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HhccHHHHHHHHHHHHhc--CcccHH-------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 789999999999988441 111000 012355677888999999999999986421 122
Q ss_pred -HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------HHH
Q 044791 277 -ASCFYTLFELCGNPKWYENAKKVHDYFLQSTI-RGD----LVLNNKVIEMYGKCGS--------------------MTD 330 (623)
Q Consensus 277 -~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~~y~~Li~~y~k~g~--------------------~~~ 330 (623)
..++..+..++...|++++|+..+++.++... ..+ ..++..+...|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 35688899999999999999999998876411 112 4588899999999999 999
Q ss_pred HHHHHHHhhcC-----C----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHH
Q 044791 331 ARRVFDHMADR-----S----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGL-QPN----EQTFLAVFSACGSADAIEE 396 (623)
Q Consensus 331 A~~lf~~m~~~-----~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~-~Pd----~~ty~~li~a~~~~g~~e~ 396 (623)
|++.|++..+. + ..+|..+...|...|++++|+..|++..+... .++ ..++..+...|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999876531 1 23789999999999999999999999875311 122 3478888999999999999
Q ss_pred HHHHHHHHHhhcCCCCC----ccchhhHHHHHHhcCCHHHHHHHHHhhCCC---CCC----HHHHHHHHHHHHHcCChhH
Q 044791 397 AFIHFESMKSEFGISPG----TEHYLGLVGVLGKCGHLFEAQQFIEQKLPF---EPT----AEFWEALRNYARIHGDIDL 465 (623)
Q Consensus 397 A~~l~~~m~~~~g~~p~----~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~---~Pd----~~ty~~Li~a~~~~g~~~~ 465 (623)
|...+++......-..+ ..++..+...|...|++++|.++|++++.+ ..+ ..++..+...|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999988743111111 457888899999999999999999984431 122 4678888889999999999
Q ss_pred HHHHHHHHHhcCC
Q 044791 466 EDHAEELMVDLDP 478 (623)
Q Consensus 466 A~~~~~~~~~m~~ 478 (623)
|...++...++..
T Consensus 326 A~~~~~~al~~~~ 338 (406)
T 3sf4_A 326 AMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999988777543
No 58
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.32 E-value=1.3e-10 Score=125.65 Aligned_cols=266 Identities=10% Similarity=-0.004 Sum_probs=192.7
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHcC-----------CCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----C-
Q 044791 246 LPPSVADLARLCQEGKVKEAIELMDKG-----------VKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQS-----T- 307 (623)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~A~~l~~~~-----------~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-----g- 307 (623)
...++.|...+...|++++|++.|++. ..| ...+|+.+..+|...|++++|+..+++.++. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 356778888999999999999998541 123 3578999999999999999999999988753 1
Q ss_pred CC-CCHHHHHHHHHHHHHcC--CHHHHHHHHHHhhcC---ChHHHHHHHHH---HHHcCChHHHHHHHHHHHHcCCCCCH
Q 044791 308 IR-GDLVLNNKVIEMYGKCG--SMTDARRVFDHMADR---SMDSWHLMING---YADNGLGDEGLQLFEQMRKLGLQPNE 378 (623)
Q Consensus 308 ~~-pd~~~y~~Li~~y~k~g--~~~~A~~lf~~m~~~---~~~tyn~Li~~---~~~~g~~eeA~~l~~eM~~~g~~Pd~ 378 (623)
.. -...++..+..++.+.| ++++|++.|++..+. +...+..+..+ +...++.++|++.|++.++... -+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cch
Confidence 11 23577877777776654 699999999988652 34455555444 4567888999999999887632 245
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHH
Q 044791 379 QTFLAVFSACGS----ADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-AEFWEAL 453 (623)
Q Consensus 379 ~ty~~li~a~~~----~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-~~ty~~L 453 (623)
.++..+...+.. .|++++|.+++++.... ...+..++..+...|.+.|++++|++.|++++...|+ ..+|..|
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 666666655554 46788999999988743 1225667888999999999999999999997776674 4566666
Q ss_pred HHHHHHc-------------------CChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcc
Q 044791 454 RNYARIH-------------------GDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTL 514 (623)
Q Consensus 454 i~a~~~~-------------------g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~ 514 (623)
..+|... +..+.|...++...++.+.... .+..+-..+...|++
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------~~~~lg~~~~~~~~~----- 350 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFR------------VCSILASLHALADQY----- 350 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCC------------CHHHHHHHHHHTTCH-----
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhh------------hhhhHHHHHHHhccH-----
Confidence 6555432 2356777788888888776543 566677778888887
Q ss_pred cchHHHHHHHHHHHHCCccc
Q 044791 515 YRDDEKLKALNQMKESTYVP 534 (623)
Q Consensus 515 ~~~~eal~~~~~M~~~Gi~P 534 (623)
++|++.|++..+....+
T Consensus 351 ---~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 351 ---EEAEYYFQKEFSKELTP 367 (472)
T ss_dssp ---HHHHHHHHHHHHSCCCH
T ss_pred ---HHHHHHHHHHHhcCCCC
Confidence 69999998777655433
No 59
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.30 E-value=1.4e-10 Score=108.72 Aligned_cols=166 Identities=13% Similarity=0.115 Sum_probs=144.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a 387 (623)
+..+|..|...|.+.|++++|++.|++..+ .+..+|..+...|.+.|++++|+..+.+....... +...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 678999999999999999999999999875 35669999999999999999999999999876433 56777888888
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHH
Q 044791 388 CGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLE 466 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A 466 (623)
+...++++.|...+...... ..-+...+..+..+|.+.|++++|++.|++++.+.| +..+|..+..+|...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998853 222567788899999999999999999999776666 568899999999999999999
Q ss_pred HHHHHHHHhcCCC
Q 044791 467 DHAEELMVDLDPS 479 (623)
Q Consensus 467 ~~~~~~~~~m~~~ 479 (623)
.+.++...+++++
T Consensus 161 ~~~~~~al~~~p~ 173 (184)
T 3vtx_A 161 VKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHTTHH
T ss_pred HHHHHHHHhCCcc
Confidence 9999999987643
No 60
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.30 E-value=3.3e-09 Score=115.97 Aligned_cols=311 Identities=10% Similarity=-0.020 Sum_probs=228.8
Q ss_pred hHHHHHHHHHHH----cCCHHHHHHHHHcCCC-CCHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 044791 247 PPSVADLARLCQ----EGKVKEAIELMDKGVK-ADASCFYTLFELCGN----PKWYENAKKVHDYFLQSTIRGDLVLNNK 317 (623)
Q Consensus 247 ~~~~~li~~~~~----~g~~~~A~~l~~~~~~-pd~~ty~~Ll~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~~y~~ 317 (623)
.....|...|.. .+++++|+..|++... -+...+..|...|.. .+++++|+++|++..+.| +...+..
T Consensus 40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 116 (490)
T 2xm6_A 40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQN 116 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344566666777 8999999999975322 366788889999988 899999999999999876 6788888
Q ss_pred HHHHHHH----cCCHHHHHHHHHHhhcC-ChHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044791 318 VIEMYGK----CGSMTDARRVFDHMADR-SMDSWHLMINGYAD----NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSAC 388 (623)
Q Consensus 318 Li~~y~k----~g~~~~A~~lf~~m~~~-~~~tyn~Li~~~~~----~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~ 388 (623)
|..+|.. .+++++|++.|++..+. +...+..|...|.. .+++++|+..|++..+.| +..++..|...|
T Consensus 117 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y 193 (490)
T 2xm6_A 117 LGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMY 193 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 9999998 88999999999988765 45588888888888 889999999999999875 678888888888
Q ss_pred Hh----cCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHh----cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH-
Q 044791 389 GS----ADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGK----CGHLFEAQQFIEQKLPFEPTAEFWEALRNYARI- 459 (623)
Q Consensus 389 ~~----~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k----~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~- 459 (623)
.. .++.++|.+.|+...+. + +...+..|..+|.. .++.++|+++|+++.. ..+...+..|...|..
T Consensus 194 ~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~-~~~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 194 SRGLGVERNDAISAQWYRKSATS-G---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE-QGNSIAQFRLGYILEQG 268 (490)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHT
T ss_pred hcCCCCCcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHCC
Confidence 87 89999999999998854 3 45677788888886 7899999999999555 3567777788888887
Q ss_pred ---cCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCcc-----ccccCCcccchHHHHHHHHHHHHCC
Q 044791 460 ---HGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRL-----VEFRNPTLYRDDEKLKALNQMKEST 531 (623)
Q Consensus 460 ---~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~-----~~~~~~~~~~~~eal~~~~~M~~~G 531 (623)
.++.++|...++...+... ...+..+-..+... +++ ++|+.+|++..+.|
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~~~--------------~~a~~~Lg~~y~~~~~g~~~~~--------~~A~~~~~~a~~~~ 326 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQGN--------------SDGQYYLAHLYDKGAEGVAKNR--------EQAISWYTKSAEQG 326 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTTTC--------------HHHHHHHHHHHHHCBTTBCCCH--------HHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHcCCCCCcCCH--------HHHHHHHHHHHhcC
Confidence 8999999988888876421 12222222222222 344 79999998887776
Q ss_pred cccCcceeeeccCHHHHHHHHHHH---HhHHHHHHhcccCCC--CChhH---HHhhHhh----hcchhHHHHHHHHHhCC
Q 044791 532 YVPDTRYVLHDIDQEAKEQALLYH---SERLAIAYGLISTPA--RTPLR---IIKNLRV----CGDCHNAIKIMSRIVGR 599 (623)
Q Consensus 532 i~Pd~~t~~~li~~~~k~~~~~~~---~g~l~~A~~ll~~m~--~~~~~---i~~~l~~----~g~~~~a~~l~~~~~~~ 599 (623)
.. .+....+.++.. .++.++|+.++.+-. ..+.. +-..+.. .++..+|++.+.+..+.
T Consensus 327 ~~----------~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~ 396 (490)
T 2xm6_A 327 DA----------TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ 396 (490)
T ss_dssp CH----------HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CH----------HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC
Confidence 32 122222233333 236777777765432 11111 1122233 57888899988887765
Q ss_pred c
Q 044791 600 E 600 (623)
Q Consensus 600 ~ 600 (623)
+
T Consensus 397 ~ 397 (490)
T 2xm6_A 397 G 397 (490)
T ss_dssp T
T ss_pred C
Confidence 4
No 61
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.29 E-value=6.3e-11 Score=128.01 Aligned_cols=353 Identities=8% Similarity=-0.067 Sum_probs=210.1
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHc----------CCC
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDK----------GVK 274 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~----------~~~ 274 (623)
..|++++|++.|++... ...... ....+.....++..+..+|...|++++|+..|++ ...
T Consensus 63 ~~G~~~eAl~~~~kAl~---------~~~~~~-~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~ 132 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEE---------LIQQEH-ADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR 132 (472)
T ss_dssp HTTCHHHHHHHHHHHHH---------HHHHHS-GGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred HCCCHHHHHHHHHHHHH---------HHHhcC-ccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence 78999999999997622 100000 0011223445677899999999999999998853 112
Q ss_pred C-CHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHhhc---CChHH
Q 044791 275 A-DASCFYTLFELCGN--PKWYENAKKVHDYFLQSTIRGDLVLNNKVIEM---YGKCGSMTDARRVFDHMAD---RSMDS 345 (623)
Q Consensus 275 p-d~~ty~~Ll~~~~~--~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~---y~k~g~~~~A~~lf~~m~~---~~~~t 345 (623)
+ ...++..+..++.+ .+++++|++.|++.++... -+...+..+..+ +...++.++|++.|++..+ .+...
T Consensus 133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~ 211 (472)
T 4g1t_A 133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211 (472)
T ss_dssp CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHH
T ss_pred hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHH
Confidence 2 34567666655544 4579999999999998642 245666666555 4456788889999987654 34556
Q ss_pred HHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhH
Q 044791 346 WHLMINGYAD----NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGL 420 (623)
Q Consensus 346 yn~Li~~~~~----~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~L 420 (623)
+..+...+.. .|++++|..+|++..+... .+..++..+...|...|++++|...|++..+. .| +..++..|
T Consensus 212 ~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l 287 (472)
T 4g1t_A 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY---IPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh---CCChHHHHHHH
Confidence 7666666555 4678899999999887642 36678889999999999999999999998853 44 34556666
Q ss_pred HHHHHhc-------------------CCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 421 VGVLGKC-------------------GHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 421 i~~~~k~-------------------g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
..+|... +..++|...|+++++..| +..+|..+...|...|++++|+..++...++.+..
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 6555332 346678888887555455 34678888999999999999999999998876542
Q ss_pred CCCCCCCCCCCchhhHHHHhh-hcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhH-
Q 044791 481 ADPKKIPTPPPKKRTAISILD-GKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSER- 558 (623)
Q Consensus 481 ~~~~~~~~~~p~~~t~~~li~-~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~- 558 (623)
.. ....+..+-. .....+++ ++|+..|++..+ +.|+...... .+....+
T Consensus 368 ~~---------~~~~~~~~~~~~~~~~~~~--------~~Ai~~y~kal~--i~~~~~~~~~----------~~~~l~~~ 418 (472)
T 4g1t_A 368 VA---------KQLLHLRYGNFQLYQMKCE--------DKAIHHFIEGVK--INQKSREKEK----------MKDKLQKI 418 (472)
T ss_dssp HH---------HHHHHHHHHHHHHHTSSCH--------HHHHHHHHHHHH--SCCCCHHHHH----------HHHHHHHH
T ss_pred hH---------HHHHHHHHHHHHHHHCCCH--------HHHHHHHHHHHh--cCcccHHHHH----------HHHHHHHH
Confidence 11 0111111111 12234544 699999866554 3344321111 1111111
Q ss_pred HHHHHhcccCCCCChh---HHHhhHhhhcchhHHHHHHHHHhCCceeee
Q 044791 559 LAIAYGLISTPARTPL---RIIKNLRVCGDCHNAIKIMSRIVGRELIVR 604 (623)
Q Consensus 559 l~~A~~ll~~m~~~~~---~i~~~l~~~g~~~~a~~l~~~~~~~~~~~r 604 (623)
+..++ ...+.... .+-..+...|+..+|++.+.+..+-+-...
T Consensus 419 ~~~~l---~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 419 AKMRL---SKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHH---HHCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHHH---HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 11222 22222211 122334666889999998888776544333
No 62
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.26 E-value=6.4e-10 Score=114.03 Aligned_cols=216 Identities=11% Similarity=0.123 Sum_probs=171.6
Q ss_pred HHHHHHHHcCCC---CCHHHHHHHHHHHh-------CCCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044791 263 KEAIELMDKGVK---ADASCFYTLFELCG-------NPKWY-------ENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 263 ~~A~~l~~~~~~---pd~~ty~~Ll~~~~-------~~g~~-------~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~ 325 (623)
++|+.+|++.+. -+...|..++..+. +.|++ ++|..+|++.++.-.+-+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 677777776332 35667777777765 45886 89999999999841233677999999999999
Q ss_pred CCHHHHHHHHHHhhcC---ChH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHHHHHHH
Q 044791 326 GSMTDARRVFDHMADR---SMD-SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSAC-GSADAIEEAFIH 400 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~---~~~-tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~-~~~g~~e~A~~l 400 (623)
|++++|.++|+++.+. +.. .|..++..+.+.|++++|..+|++.++... .+...|....... ...|++++|..+
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~ 191 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998763 344 899999999999999999999999997642 2344454433332 237999999999
Q ss_pred HHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC---CCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 401 FESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP---FEP--TAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 401 ~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~---~~P--d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
|+...+... -+...|..++..+.+.|++++|..+|++++. +.| ....|..++..+...|+.+.|..+++.+.+
T Consensus 192 ~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 192 FELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999986422 2567888999999999999999999999655 244 467899999999999999999999999999
Q ss_pred cCCCCC
Q 044791 476 LDPSKA 481 (623)
Q Consensus 476 m~~~~~ 481 (623)
..|+..
T Consensus 270 ~~p~~~ 275 (308)
T 2ond_A 270 AFREEY 275 (308)
T ss_dssp HTTTTT
T ss_pred Hccccc
Confidence 888754
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.26 E-value=7e-11 Score=129.34 Aligned_cols=204 Identities=11% Similarity=0.046 Sum_probs=172.5
Q ss_pred CHHHHHHHHHc--CCCC-CHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044791 261 KVKEAIELMDK--GVKA-DASCFYTLFELCGNPKWY-ENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFD 336 (623)
Q Consensus 261 ~~~~A~~l~~~--~~~p-d~~ty~~Ll~~~~~~g~~-~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~ 336 (623)
++++|+..+++ ...| +...+..+..++...|++ ++|++.|++.++.. +-+..+|..|..+|.+.|++++|++.|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 36677777753 3334 678899999999999999 99999999999864 3358999999999999999999999999
Q ss_pred Hhhc--CChHHHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHHHH
Q 044791 337 HMAD--RSMDSWHLMINGYADN---------GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA--------DAIEEA 397 (623)
Q Consensus 337 ~m~~--~~~~tyn~Li~~~~~~---------g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~--------g~~e~A 397 (623)
+..+ ++...|..+...|... |++++|+..|++.++... -+...|..+..+|... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 9875 5567899999999999 999999999999998642 2578899999999988 999999
Q ss_pred HHHHHHHHhhcCCCC----CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHH
Q 044791 398 FIHFESMKSEFGISP----GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHA 469 (623)
Q Consensus 398 ~~l~~~m~~~~g~~p----~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~ 469 (623)
++.|++..+. .| +...|..+..+|...|++++|++.|++++...| +...+..+..++...|+.++|.+.
T Consensus 241 ~~~~~~al~~---~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 241 LSAYAQAEKV---DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHH---CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999853 34 677899999999999999999999999777666 456788888899988888866553
No 64
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.24 E-value=1.3e-09 Score=120.52 Aligned_cols=127 Identities=15% Similarity=0.174 Sum_probs=89.7
Q ss_pred CCCccccccc----cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHH
Q 044791 195 PRSPNQWNNQ----QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMD 270 (623)
Q Consensus 195 ~~~p~~w~~~----~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 270 (623)
|.+...|..+ +.|++++|..+|+++.. ..|+ ....+..++..+.+.|++++|..+|+
T Consensus 10 P~~~~~w~~l~~~~~~~~~~~a~~~~e~al~--~~P~-----------------~~~~w~~~~~~~~~~~~~~~a~~~~~ 70 (530)
T 2ooe_A 10 PYDLDAWSILIREAQNQPIDKARKTYERLVA--QFPS-----------------SGRFWKLYIEAEIKAKNYDKVEKLFQ 70 (530)
T ss_dssp TTCHHHHHHHHHHHHSSCHHHHHHHHHHHHT--TCTT-----------------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HCCC-----------------CHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 3344567655 68999999999999843 2222 23455577888889999999999998
Q ss_pred cCC--CCCHHHHHHHHHHH-hCCCCHHHHHH----HHHHHHHc-CCCC-CHHHHHHHHHHHHH---------cCCHHHHH
Q 044791 271 KGV--KADASCFYTLFELC-GNPKWYENAKK----VHDYFLQS-TIRG-DLVLNNKVIEMYGK---------CGSMTDAR 332 (623)
Q Consensus 271 ~~~--~pd~~ty~~Ll~~~-~~~g~~~~A~~----l~~~m~~~-g~~p-d~~~y~~Li~~y~k---------~g~~~~A~ 332 (623)
+.+ .|+...|..++... ...|++++|.+ +|++.++. |..| +...|...+....+ .|++++|+
T Consensus 71 ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~ 150 (530)
T 2ooe_A 71 RCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVR 150 (530)
T ss_dssp HHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHH
Confidence 743 47777777666533 34566666554 77777653 6544 46788888777655 68899999
Q ss_pred HHHHHhhc
Q 044791 333 RVFDHMAD 340 (623)
Q Consensus 333 ~lf~~m~~ 340 (623)
.+|++..+
T Consensus 151 ~~y~~al~ 158 (530)
T 2ooe_A 151 RVYQRGCV 158 (530)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 99998765
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.24 E-value=2.5e-10 Score=120.47 Aligned_cols=228 Identities=9% Similarity=-0.032 Sum_probs=178.9
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCC-----CC----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCC----CCHHHHH
Q 044791 252 DLARLCQEGKVKEAIELMDKGVK-----AD----ASCFYTLFELCGNPKWYENAKKVHDYFLQS--TIR----GDLVLNN 316 (623)
Q Consensus 252 li~~~~~~g~~~~A~~l~~~~~~-----pd----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~--g~~----pd~~~y~ 316 (623)
+...+...|++++|++.|++.+. +| ..+|..+..++...|++++|++.+.+.++. ... ....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 44556789999999999976332 33 357889999999999999999999998764 111 1246889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcC-----Ch----HHHHHHHHHHHHcCChHHHHHHHHHHHHc----CC-CCCHHHHH
Q 044791 317 KVIEMYGKCGSMTDARRVFDHMADR-----SM----DSWHLMINGYADNGLGDEGLQLFEQMRKL----GL-QPNEQTFL 382 (623)
Q Consensus 317 ~Li~~y~k~g~~~~A~~lf~~m~~~-----~~----~tyn~Li~~~~~~g~~eeA~~l~~eM~~~----g~-~Pd~~ty~ 382 (623)
.+..+|...|++++|++.|++..+. +. .+|+.+...|...|++++|+..|++..+. +. .-...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 9999999999999999999987642 22 38999999999999999999999999872 33 23457889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCC--CC-CccchhhHHHHHHhcCC---HHHHHHHHHhhCCCCCCH-HHHHHHHH
Q 044791 383 AVFSACGSADAIEEAFIHFESMKSEFGI--SP-GTEHYLGLVGVLGKCGH---LFEAQQFIEQKLPFEPTA-EFWEALRN 455 (623)
Q Consensus 383 ~li~a~~~~g~~e~A~~l~~~m~~~~g~--~p-~~~ty~~Li~~~~k~g~---~e~A~~lf~~~m~~~Pd~-~ty~~Li~ 455 (623)
.+..+|.+.|++++|...+++..+-..- .+ ....+..|...|...|+ +++|+.++++ .+..++. ..+..|..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLES-KMLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-CcCHHHHHHHHHHHHH
Confidence 9999999999999999999987753111 11 12335677888888999 9999999999 6544433 46778888
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 456 YARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 456 a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
.|...|+.++|...++...++....
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999988876553
No 66
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.23 E-value=3.8e-11 Score=121.21 Aligned_cols=195 Identities=12% Similarity=0.088 Sum_probs=134.5
Q ss_pred chHHHHHHHHHHHcCCHHHHHHHHHcCC----------CC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CC
Q 044791 246 LPPSVADLARLCQEGKVKEAIELMDKGV----------KA-DASCFYTLFELCGNPKWYENAKKVHDYFLQS------TI 308 (623)
Q Consensus 246 ~~~~~~li~~~~~~g~~~~A~~l~~~~~----------~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~------g~ 308 (623)
...+..+...|...|++++|+++|++.+ .+ ...++..+..++...|++++|+++++++++. +-
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 4456677888899999999999986422 12 2457889999999999999999999998875 22
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--------C---hHHHHHHHHHHHHcCChHHHHHHHHHHHHc----
Q 044791 309 RG-DLVLNNKVIEMYGKCGSMTDARRVFDHMADR--------S---MDSWHLMINGYADNGLGDEGLQLFEQMRKL---- 372 (623)
Q Consensus 309 ~p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~--------~---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~---- 372 (623)
.+ ...++..+..+|.+.|++++|+++|+++.+. + ..+|..+...|...|++++|+.+|+++.+.
T Consensus 149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 228 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER 228 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 22 3577888999999999999999999988643 2 237889999999999999999999999863
Q ss_pred ---CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 373 ---GLQPNE-------QTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 373 ---g~~Pd~-------~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
...+.. ..+..+...+...+.+++|...+...... ......++..|..+|.+.|++++|.++|++++.
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHC------CCHHHHHHHHHHC-------CCSCCCC-----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 122221 12222233333445555555566555421 112456788899999999999999999998543
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.22 E-value=5.6e-11 Score=130.08 Aligned_cols=206 Identities=8% Similarity=-0.026 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHH
Q 044791 293 YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSM-TDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQ 368 (623)
Q Consensus 293 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~-~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~e 368 (623)
+++++..+++..+.. ..+...+..+..+|...|++ ++|++.|++..+. +...|..+..+|.+.|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 677777887766542 34789999999999999999 9999999988653 466999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhc--------CCH
Q 044791 369 MRKLGLQPNEQTFLAVFSACGSA---------DAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKC--------GHL 430 (623)
Q Consensus 369 M~~~g~~Pd~~ty~~li~a~~~~---------g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~--------g~~ 430 (623)
.++. .|+..++..+..+|... |++++|++.|++..+. .| +...|..|..+|... |++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9986 57788999999999999 9999999999999853 44 577888999999998 999
Q ss_pred HHHHHHHHhhCCCCC----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCcc
Q 044791 431 FEAQQFIEQKLPFEP----TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRL 506 (623)
Q Consensus 431 e~A~~lf~~~m~~~P----d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~ 506 (623)
++|++.|++++.+.| +...|..+..+|...|++++|.+.++...++.+.. ...+..+-..+...
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~------------~~a~~~l~~~~~~l 305 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAW------------PEPQQREQQLLEFL 305 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHH
Confidence 999999999777666 77899999999999999999999999999987664 33566666666777
Q ss_pred ccccCCcccchHHHHHHH
Q 044791 507 VEFRNPTLYRDDEKLKAL 524 (623)
Q Consensus 507 ~~~~~~~~~~~~eal~~~ 524 (623)
|++ ++|++.+
T Consensus 306 g~~--------~eAi~~~ 315 (474)
T 4abn_A 306 SRL--------TSLLESK 315 (474)
T ss_dssp HHH--------HHHHHHT
T ss_pred HHH--------HHHHHHh
Confidence 766 5666654
No 68
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.22 E-value=2.9e-10 Score=115.87 Aligned_cols=190 Identities=11% Similarity=0.047 Sum_probs=121.5
Q ss_pred HHHHHHcCCHHHHHHHHHcCCC--------CC-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-CC----HHHHHHH
Q 044791 253 LARLCQEGKVKEAIELMDKGVK--------AD-ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIR-GD----LVLNNKV 318 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~~~--------pd-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~~y~~L 318 (623)
...|...|++++|++.|++.+. ++ ..+|+.+..+|.+.|++++|+..|++.++.... .+ ..+++.+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4456777888888877753211 11 356777888888888888888888777653110 01 3567777
Q ss_pred HHHHHHc-CCHHHHHHHHHHhhcC-----C----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH------HHHH
Q 044791 319 IEMYGKC-GSMTDARRVFDHMADR-----S----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE------QTFL 382 (623)
Q Consensus 319 i~~y~k~-g~~~~A~~lf~~m~~~-----~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~------~ty~ 382 (623)
..+|... |++++|+..|++..+. + ..+|+.+...|.+.|++++|+..|++..+....... .+|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 7888875 8888888888776531 1 236777778888888888888888887775433221 1566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCcc------chhhHHHHHH--hcCCHHHHHHHHHhhCCCCC
Q 044791 383 AVFSACGSADAIEEAFIHFESMKSEFGISPGTE------HYLGLVGVLG--KCGHLFEAQQFIEQKLPFEP 445 (623)
Q Consensus 383 ~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~------ty~~Li~~~~--k~g~~e~A~~lf~~~m~~~P 445 (623)
.+..++...|++++|+..|++.. .+.|+.. .+..|+.+|. ..+++++|+..|++++.+.|
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al---~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQ---SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGG---CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH---hhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHH
Confidence 67777777888888888887766 3444321 2333455554 35678888888877444444
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.19 E-value=7.7e-10 Score=113.44 Aligned_cols=215 Identities=10% Similarity=0.088 Sum_probs=164.2
Q ss_pred HHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHH-------HcCCH-------HHHHHHHHcC---
Q 044791 210 PQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLC-------QEGKV-------KEAIELMDKG--- 272 (623)
Q Consensus 210 ~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~g~~-------~~A~~l~~~~--- 272 (623)
++|+.+|++... ..|+ ....+..++..+. +.|++ ++|..+|+++
T Consensus 33 ~~a~~~~~~al~--~~p~-----------------~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~ 93 (308)
T 2ond_A 33 KRVMFAYEQCLL--VLGH-----------------HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST 93 (308)
T ss_dssp HHHHHHHHHHHH--HHTT-----------------CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH--HcCC-----------------CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH
Confidence 688888887732 1111 2233444444443 46886 9999999874
Q ss_pred CCCC-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHhhcCC---hHHH
Q 044791 273 VKAD-ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD-LV-LNNKVIEMYGKCGSMTDARRVFDHMADRS---MDSW 346 (623)
Q Consensus 273 ~~pd-~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~-~y~~Li~~y~k~g~~~~A~~lf~~m~~~~---~~ty 346 (623)
+.|+ ...|..++..+.+.|++++|.++|+++++. .|+ .. +|..++..+.+.|++++|+++|++..+.+ ...|
T Consensus 94 ~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~ 171 (308)
T 2ond_A 94 LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 171 (308)
T ss_dssp TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4454 457999999999999999999999999984 443 43 89999999999999999999999987643 3345
Q ss_pred HHHHHHHH-HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC--CccchhhHHHH
Q 044791 347 HLMINGYA-DNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP--GTEHYLGLVGV 423 (623)
Q Consensus 347 n~Li~~~~-~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p--~~~ty~~Li~~ 423 (623)
...+.... ..|++++|..+|++.++... -+...|..++..+.+.|++++|..+|++......+.| ....|..++..
T Consensus 172 ~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~ 250 (308)
T 2ond_A 172 VTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250 (308)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 43333322 26999999999999987632 2678889999999999999999999999996422455 35578888999
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCC
Q 044791 424 LGKCGHLFEAQQFIEQKLPFEPT 446 (623)
Q Consensus 424 ~~k~g~~e~A~~lf~~~m~~~Pd 446 (623)
+.+.|+.++|..++++++...|+
T Consensus 251 ~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 251 ESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp HHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHcCCHHHHHHHHHHHHHHccc
Confidence 99999999999999996655554
No 70
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.17 E-value=2.5e-09 Score=98.60 Aligned_cols=157 Identities=13% Similarity=0.072 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCC---CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKGVK---ADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK 324 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~~~---pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k 324 (623)
.+..+...+...|++++|+++|++.+. .+..++..+..++...|++++|.++++++++.. ..+..++..+...|..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 344667778888999999999976443 356778888888889999999999998888763 3467888888888888
Q ss_pred cCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044791 325 CGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHF 401 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~ 401 (623)
.|++++|+++|+++.+ .+...|..+...+...|++++|+.+|+++.+.. ..+..++..+...+...|++++|.+.+
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998888764 355678888888888899999999888888764 235677888888888888888888888
Q ss_pred HHHHh
Q 044791 402 ESMKS 406 (623)
Q Consensus 402 ~~m~~ 406 (623)
+.+..
T Consensus 168 ~~~~~ 172 (186)
T 3as5_A 168 KKANE 172 (186)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88774
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=1e-09 Score=101.25 Aligned_cols=164 Identities=15% Similarity=0.068 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG 389 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~ 389 (623)
..|..+...+...|++++|+++|+++.+. +...|..+...+...|++++|..+|+++.+.. ..+..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 44555666666666666666666666542 34466666666666777777777776666542 224556666666666
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHH
Q 044791 390 SADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDH 468 (623)
Q Consensus 390 ~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~ 468 (623)
..|++++|.++++++... ...+...+..+..+|.+.|++++|.++|++++...| +...+..+...+...|+.++|..
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 677777777777666643 122445566666667777777777777776444333 45666677777777777777777
Q ss_pred HHHHHHhcCCC
Q 044791 469 AEELMVDLDPS 479 (623)
Q Consensus 469 ~~~~~~~m~~~ 479 (623)
.++.+.++.+.
T Consensus 166 ~~~~~~~~~~~ 176 (186)
T 3as5_A 166 HFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHcCCC
Confidence 77776665544
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.16 E-value=3.5e-09 Score=111.59 Aligned_cols=221 Identities=12% Similarity=0.026 Sum_probs=172.7
Q ss_pred HHHHHcCCHHHHHHHHHcCCC-----CC----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CC---C-CHHHHHHH
Q 044791 254 ARLCQEGKVKEAIELMDKGVK-----AD----ASCFYTLFELCGNPKWYENAKKVHDYFLQST--IR---G-DLVLNNKV 318 (623)
Q Consensus 254 ~~~~~~g~~~~A~~l~~~~~~-----pd----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g--~~---p-d~~~y~~L 318 (623)
..+...|++++|++.|++.+. +| ..++..+..+|...|+++.|+..+.+.++.- .. + ...+++.|
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 345689999999999975322 33 3578889999999999999999999887641 11 1 25688899
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcC-----C----hHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 044791 319 IEMYGKCGSMTDARRVFDHMADR-----S----MDSWHLMINGYADNGLGDEGLQLFEQMRK-----LGLQPNEQTFLAV 384 (623)
Q Consensus 319 i~~y~k~g~~~~A~~lf~~m~~~-----~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~-----~g~~Pd~~ty~~l 384 (623)
..+|...|++++|++.|++..+. + ..+++.|...|...|++++|+..|++..+ .... ...++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHH
Confidence 99999999999999999887641 2 23789999999999999999999999986 3222 36788899
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCC---ccchhhHHHHHHhcCC---HHHHHHHHHhhCCCCCCH-HHHHHHHHHH
Q 044791 385 FSACGSADAIEEAFIHFESMKSEFGISPG---TEHYLGLVGVLGKCGH---LFEAQQFIEQKLPFEPTA-EFWEALRNYA 457 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~~~m~~~~g~~p~---~~ty~~Li~~~~k~g~---~e~A~~lf~~~m~~~Pd~-~ty~~Li~a~ 457 (623)
..++.+.|++++|...+++..+-..-..+ ...+..|...|...|+ +++|+.++++ ....++. ..+..|...|
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-KNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-CCChhHHHHHHHHHHHHH
Confidence 99999999999999999998864222112 2345556666777888 9999999999 5544433 4666788899
Q ss_pred HHcCChhHHHHHHHHHHhc
Q 044791 458 RIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 458 ~~~g~~~~A~~~~~~~~~m 476 (623)
...|+.++|...++...++
T Consensus 347 ~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999988887664
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.15 E-value=5.1e-10 Score=128.45 Aligned_cols=161 Identities=14% Similarity=0.182 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 044791 312 LVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSA 387 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a 387 (623)
..+|+.|..+|.+.|++++|++.|++..+ .+..+|+.|..+|.+.|++++|+..|++.++. .| +..+|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 34555555555555555555555554443 12335555555555555555555555555543 22 24455555555
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCChhH
Q 044791 388 CGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-AEFWEALRNYARIHGDIDL 465 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-~~ty~~Li~a~~~~g~~~~ 465 (623)
|.+.|++++|++.|++..+ +.| +...|+.|..+|.+.|++++|++.|++++++.|+ ...|..|..+|...|++++
T Consensus 87 l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 5555555555555555552 233 2445555555666666666666666655554443 3455556666666666666
Q ss_pred HHHHHHHHHhcC
Q 044791 466 EDHAEELMVDLD 477 (623)
Q Consensus 466 A~~~~~~~~~m~ 477 (623)
|.+.++.+.++.
T Consensus 164 A~~~~~kal~l~ 175 (723)
T 4gyw_A 164 YDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 665555555443
No 74
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.13 E-value=1.5e-08 Score=105.90 Aligned_cols=262 Identities=10% Similarity=-0.056 Sum_probs=183.5
Q ss_pred HHHHHHHcCCHHHHHHHHHc---CCCC-CH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHH
Q 044791 252 DLARLCQEGKVKEAIELMDK---GVKA-DA----SCFYTLFELCGNPKWYENAKKVHDYFLQSTI-RGD----LVLNNKV 318 (623)
Q Consensus 252 li~~~~~~g~~~~A~~l~~~---~~~p-d~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~~y~~L 318 (623)
+...+...|++++|+.++++ .... +. .+++.+..++...|++++|.+.+++.++..- ..+ ..++..+
T Consensus 20 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 20 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 34456689999999999864 2222 22 2567777888899999999999998876311 112 2446778
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcC-----C------hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC----CHHHHHH
Q 044791 319 IEMYGKCGSMTDARRVFDHMADR-----S------MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP----NEQTFLA 383 (623)
Q Consensus 319 i~~y~k~g~~~~A~~lf~~m~~~-----~------~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P----d~~ty~~ 383 (623)
...+...|++++|+..|++..+. + ..++..+...+...|++++|..++++..+..-.. ...+|..
T Consensus 100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 179 (373)
T 1hz4_A 100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHH
Confidence 88999999999999999987541 1 2267778889999999999999999988653221 2467888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchh-----hHHHHHHhcCCHHHHHHHHHhhCCCCCC-----HHHHHHH
Q 044791 384 VFSACGSADAIEEAFIHFESMKSEFGISPGTEHYL-----GLVGVLGKCGHLFEAQQFIEQKLPFEPT-----AEFWEAL 453 (623)
Q Consensus 384 li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~-----~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-----~~ty~~L 453 (623)
+...+...|++++|...+++......-......+. .++..+...|++++|..++++++...+. ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 88889999999999999998875311111111122 2334477899999999999995543332 3456778
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCch-hhHHHHhhhcCccccccCCcccchHHHHHHHHHHH
Q 044791 454 RNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKK-RTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMK 528 (623)
Q Consensus 454 i~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~-~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~ 528 (623)
...+...|+.++|...++...+....... ..+. ..+..+-..+...|++ ++|...|++..
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~--------~~A~~~l~~al 320 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRL-------MSDLNRNLLLLNQLYWQAGRK--------SDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTC-------HHHHHHHHHHHHHHHHHHTCH--------HHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcc-------hhhHHHHHHHHHHHHHHhCCH--------HHHHHHHHHHH
Confidence 88999999999999988887665333111 0112 2344445556677776 68888875543
No 75
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.12 E-value=2.6e-09 Score=103.72 Aligned_cols=140 Identities=8% Similarity=-0.024 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcCC---C-CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKGV---K-ADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMY 322 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~~---~-pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y 322 (623)
..+..+...+...|++++|++.|++.+ . ++...+..+..++...|++++|++.|++.++... -+..+|..+..+|
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHHHH
Confidence 344445555556666666666654311 1 4444554555556666666666666666555321 1345555566666
Q ss_pred HHcCCHHHHHHHHHHhhcC---Ch-------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHH
Q 044791 323 GKCGSMTDARRVFDHMADR---SM-------DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN---EQTFLAVFSACG 389 (623)
Q Consensus 323 ~k~g~~~~A~~lf~~m~~~---~~-------~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd---~~ty~~li~a~~ 389 (623)
.+.|++++|+..|++..+. +. ..|..+...+...|++++|+..|++.++. .|+ ...|..+..+|.
T Consensus 87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHH
Confidence 6666666666666555431 22 23555555555566666666666655543 343 234444444443
No 76
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.12 E-value=1.5e-09 Score=110.59 Aligned_cols=202 Identities=10% Similarity=0.005 Sum_probs=147.6
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 044791 261 KVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQS----TIRGD-LVLNNKVIEMYGKCGSMTDARRVF 335 (623)
Q Consensus 261 ~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~~y~~Li~~y~k~g~~~~A~~lf 335 (623)
++++|.+.|++. +.+|...|++++|.+.|.+.++. |-.++ ..+|+.+..+|.+.|++++|+..|
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 488888877653 56778899999999999988764 32222 578999999999999999999999
Q ss_pred HHhhcC-----C----hHHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHHHHHH
Q 044791 336 DHMADR-----S----MDSWHLMINGYADN-GLGDEGLQLFEQMRKLGLQP-N----EQTFLAVFSACGSADAIEEAFIH 400 (623)
Q Consensus 336 ~~m~~~-----~----~~tyn~Li~~~~~~-g~~eeA~~l~~eM~~~g~~P-d----~~ty~~li~a~~~~g~~e~A~~l 400 (623)
++..+. + ..+|+.+...|... |++++|+..|++.++....- + ..+|+.+...+...|++++|+.+
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 987642 2 34899999999996 99999999999988642111 1 35788999999999999999999
Q ss_pred HHHHHhhcCCCCCcc------chhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHH------HHHHHHHHHHHcCChhHHHH
Q 044791 401 FESMKSEFGISPGTE------HYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAE------FWEALRNYARIHGDIDLEDH 468 (623)
Q Consensus 401 ~~~m~~~~g~~p~~~------ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~------ty~~Li~a~~~~g~~~~A~~ 468 (623)
|++.... ....... .|..+..+|...|++++|+..|++++.+.|+.. .+..|+.+| ..++.+...+
T Consensus 181 ~~~al~~-~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~-~~~~~~~~~~ 258 (292)
T 1qqe_A 181 YSKLIKS-SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAV-NEGDSEQLSE 258 (292)
T ss_dssp HHHHHHT-TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHH-HTTCTTTHHH
T ss_pred HHHHHHH-HhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HcCCHHHHHH
Confidence 9999854 2221111 466778889999999999999999777777542 234455555 3455444445
Q ss_pred HHHHHHh
Q 044791 469 AEELMVD 475 (623)
Q Consensus 469 ~~~~~~~ 475 (623)
+++.+..
T Consensus 259 A~~~~~~ 265 (292)
T 1qqe_A 259 HCKEFDN 265 (292)
T ss_dssp HHHHHTT
T ss_pred HHHHhcc
Confidence 5555433
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.11 E-value=3.7e-09 Score=102.64 Aligned_cols=195 Identities=15% Similarity=0.090 Sum_probs=148.1
Q ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHH
Q 044791 275 ADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMIN 351 (623)
Q Consensus 275 pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~ 351 (623)
.|...+..+...+...|++++|++.|++.++....++..++..+..+|.+.|++++|++.|++..+. +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4667888899999999999999999999998754367788888999999999999999999988754 3448899999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC---ccchhhHH
Q 044791 352 GYADNGLGDEGLQLFEQMRKLGLQPNE-------QTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG---TEHYLGLV 421 (623)
Q Consensus 352 ~~~~~g~~eeA~~l~~eM~~~g~~Pd~-------~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~---~~ty~~Li 421 (623)
.|...|++++|+..|++..+.... +. .+|..+...+...|++++|++.|++.. .+.|+ ...|..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHH
Confidence 999999999999999999886322 33 457778888889999999999999888 44565 45667777
Q ss_pred HHHHhcCCHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 422 GVLGKCGHLFEAQQFIEQKLPF-EPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 422 ~~~~k~g~~e~A~~lf~~~m~~-~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
.+|...|+. +++++..+ ..+...|..+.. ...+.+++|...++...++.|++
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l~p~~ 213 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEKA--KADAAFKKAVDYLGEAVTLSPNR 213 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhcCCCC
Confidence 777655543 33331111 223445544443 34566899999999999988764
No 78
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.09 E-value=4.1e-10 Score=111.54 Aligned_cols=199 Identities=12% Similarity=0.083 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--------
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQS------TIRG-DLVLNNKVIEMYGKCGSMTDARRVFDHMADR-------- 341 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~------g~~p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-------- 341 (623)
..++..+..++...|++++|+++++++++. +-.+ ...++..+..+|...|++++|+++|++..+.
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 467889999999999999999999998865 2222 3678899999999999999999999987642
Q ss_pred C---hHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---
Q 044791 342 S---MDSWHLMINGYADNGLGDEGLQLFEQMRKL------GLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEF--- 408 (623)
Q Consensus 342 ~---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~------g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~--- 408 (623)
+ ..+|..+...|...|++++|+.+|+++.+. +-.| ...++..+..+|...|++++|..+|+++.+..
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1 338999999999999999999999999875 2133 35688889999999999999999999988531
Q ss_pred ---CCCCCcc-chhhHHHHHHhc------CCHHHHHHHHHhhCC-CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 409 ---GISPGTE-HYLGLVGVLGKC------GHLFEAQQFIEQKLP-FEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 409 ---g~~p~~~-ty~~Li~~~~k~------g~~e~A~~lf~~~m~-~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
...+... .|..+...+... ..+.++..+++. +. ..| ...++..|...|...|++++|...++...++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKA-CKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------C-CCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 1222222 233333233222 235555555655 33 223 3367888999999999999999999988765
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.08 E-value=6.6e-09 Score=108.71 Aligned_cols=257 Identities=9% Similarity=-0.022 Sum_probs=181.4
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCC-----CCH--
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVK-----ADA-- 277 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~-----pd~-- 277 (623)
..|++++|+..+++..... |..... .....++.+...+...|++++|++.+++.+. .+.
T Consensus 26 ~~g~~~~A~~~~~~al~~~--~~~~~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 91 (373)
T 1hz4_A 26 NDGNPDEAERLAKLALEEL--PPGWFY------------SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 91 (373)
T ss_dssp HTTCHHHHHHHHHHHHHTC--CTTCHH------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHHHHHHHcC--CCCchh------------HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHH
Confidence 6899999999999873311 110000 0112345666778899999999999864221 222
Q ss_pred --HHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-------
Q 044791 278 --SCFYTLFELCGNPKWYENAKKVHDYFLQS----TIR--G-DLVLNNKVIEMYGKCGSMTDARRVFDHMADR------- 341 (623)
Q Consensus 278 --~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~--p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~------- 341 (623)
.++..+...+...|++++|++.+++.++. +.. | ...++..+..+|...|++++|+.++++..+.
T Consensus 92 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 171 (373)
T 1hz4_A 92 ALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 171 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH
Confidence 34677888899999999999999988763 222 2 2456778889999999999999999987531
Q ss_pred -ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-
Q 044791 342 -SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN--EQTFL----AVFSACGSADAIEEAFIHFESMKSEFGISPG- 413 (623)
Q Consensus 342 -~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd--~~ty~----~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~- 413 (623)
...+|..+...+...|++++|..++++.....-.++ ..... ..+..+...|++++|...+++.... .....
T Consensus 172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~ 250 (373)
T 1hz4_A 172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNH 250 (373)
T ss_dssp GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCG
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcch
Confidence 124788899999999999999999999876422211 11111 2334477899999999999887742 21111
Q ss_pred --ccchhhHHHHHHhcCCHHHHHHHHHhhCCC------CCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhc
Q 044791 414 --TEHYLGLVGVLGKCGHLFEAQQFIEQKLPF------EPTA-EFWEALRNYARIHGDIDLEDHAEELMVDL 476 (623)
Q Consensus 414 --~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~------~Pd~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m 476 (623)
...+..+..++...|++++|.+++++++.. .++. ..+..+..++...|+.++|...++...++
T Consensus 251 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 251 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 113556778899999999999999884321 1122 25666777889999999999888887765
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.08 E-value=1.8e-09 Score=123.98 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGY 353 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~ 353 (623)
..+|+.|..++.+.|++++|++.|++.++.. +-+..+|..|..+|.+.|++++|++.|++..+ .+...|+.|..+|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3467777777777777777777777777742 22467777777777777777777777776654 2345777777777
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHH
Q 044791 354 ADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLF 431 (623)
Q Consensus 354 ~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e 431 (623)
.+.|++++|++.|++.++. .| +..+|+.+..+|.+.|++++|++.|++..+ +.| +...|..|..+|...|+++
T Consensus 88 ~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~---l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALK---LKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCChHHHhhhhhHHHhcccHH
Confidence 7777777777777777765 33 456777777777777777777777777763 344 3556777777777777777
Q ss_pred HHHHHHHh
Q 044791 432 EAQQFIEQ 439 (623)
Q Consensus 432 ~A~~lf~~ 439 (623)
+|.+.|++
T Consensus 163 ~A~~~~~k 170 (723)
T 4gyw_A 163 DYDERMKK 170 (723)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 77777766
No 81
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.07 E-value=1.5e-09 Score=107.52 Aligned_cols=195 Identities=14% Similarity=0.116 Sum_probs=138.3
Q ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHcCC----------CC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------C
Q 044791 245 VLPPSVADLARLCQEGKVKEAIELMDKGV----------KA-DASCFYTLFELCGNPKWYENAKKVHDYFLQS------T 307 (623)
Q Consensus 245 ~~~~~~~li~~~~~~g~~~~A~~l~~~~~----------~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~------g 307 (623)
....+..+...|...|++++|+.+|++.+ .| ...++..+..++...|++++|+++++++++. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 44566788889999999999999996422 22 2457899999999999999999999998875 1
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--------C---hHHHHHHHHHHHHcCChHHHHHHHHHHHHc---
Q 044791 308 I-RGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR--------S---MDSWHLMINGYADNGLGDEGLQLFEQMRKL--- 372 (623)
Q Consensus 308 ~-~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~--------~---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~--- 372 (623)
- .....++..+..+|...|++++|+.+|+++.+. + ..+|..+...|...|++++|+.+|+++.+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 223678899999999999999999999988653 3 337899999999999999999999999864
Q ss_pred ----CCCCCH-HHHHHHHHHHHhcCC------HHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhh
Q 044791 373 ----GLQPNE-QTFLAVFSACGSADA------IEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQK 440 (623)
Q Consensus 373 ----g~~Pd~-~ty~~li~a~~~~g~------~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~ 440 (623)
...+.. ..+..+...+...+. +..+...++.+. ...+ ...++..|..+|.+.|++++|..+|+++
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 278 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACK---VDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCA 278 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCC---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 122222 233333333333222 233333332221 1112 3456888999999999999999999985
Q ss_pred CC
Q 044791 441 LP 442 (623)
Q Consensus 441 m~ 442 (623)
+.
T Consensus 279 l~ 280 (283)
T 3edt_B 279 SR 280 (283)
T ss_dssp HT
T ss_pred HH
Confidence 54
No 82
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.05 E-value=2.2e-09 Score=113.21 Aligned_cols=220 Identities=10% Similarity=-0.034 Sum_probs=165.1
Q ss_pred cCCChHHHHHHHHHhcCCC-CCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCC-----C---
Q 044791 205 QNQGYPQARNSYQQVSPGH-QIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVK-----A--- 275 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~-----p--- 275 (623)
..|++++|++.|++..... ..++. ......+..+...|...|++++|+..+++.+. .
T Consensus 115 ~~g~~~~A~~~~~~al~~~~~~~~~--------------~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 115 DQREYLSAIKFFKKAESKLIFVKDR--------------IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCCH--------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HhcCHHHHHHHHHHHHHHHhhCCCH--------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 7899999999999884310 01110 01234566788899999999999999864211 1
Q ss_pred --CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhc-----CC-
Q 044791 276 --DASCFYTLFELCGNPKWYENAKKVHDYFLQSTI-RGD----LVLNNKVIEMYGKCGSMTDARRVFDHMAD-----RS- 342 (623)
Q Consensus 276 --d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~~y~~Li~~y~k~g~~~~A~~lf~~m~~-----~~- 342 (623)
...+++.+..+|...|++++|++.|++.++..- ..+ ..++..|..+|...|++++|++.|++..+ .+
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 235788999999999999999999999876411 112 35888999999999999999999998865 33
Q ss_pred ---hHHHHHHHHHHHHcCChHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcCCCC
Q 044791 343 ---MDSWHLMINGYADNGLGDEGLQLFEQMRKLG----LQPNEQTFLAVFSACGSADA---IEEAFIHFESMKSEFGISP 412 (623)
Q Consensus 343 ---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g----~~Pd~~ty~~li~a~~~~g~---~e~A~~l~~~m~~~~g~~p 412 (623)
..++..+...|.+.|++++|...|++..+.. -......+..+...+...|+ +++|+.+++... ....
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~ 337 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYAD 337 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHH
Confidence 2379999999999999999999999987531 11122345677778888999 788888887653 2222
Q ss_pred CccchhhHHHHHHhcCCHHHHHHHHHhhC
Q 044791 413 GTEHYLGLVGVLGKCGHLFEAQQFIEQKL 441 (623)
Q Consensus 413 ~~~ty~~Li~~~~k~g~~e~A~~lf~~~m 441 (623)
....+..|...|.+.|++++|.+.|++++
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34567788999999999999999999843
No 83
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.00 E-value=7.4e-09 Score=109.06 Aligned_cols=220 Identities=11% Similarity=0.057 Sum_probs=163.7
Q ss_pred cCCChHHHHHHHHHhcCCC-CCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCC---------C
Q 044791 205 QNQGYPQARNSYQQVSPGH-QIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGV---------K 274 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~---------~ 274 (623)
..|++++|+..|++..... ..++ .......+..+...|...|++++|+..+++.+ .
T Consensus 113 ~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~ 178 (378)
T 3q15_A 113 DQKEYVEAIGYYREAEKELPFVSD--------------DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYS 178 (378)
T ss_dssp HTTCHHHHHHHHHHHHTTGGGCCC--------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCH
T ss_pred HHCCHHHHHHHHHHHHHHHhhCCC--------------hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCch
Confidence 7899999999999874311 1111 01123456678888999999999999886411 1
Q ss_pred C-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-----CC-
Q 044791 275 A-DASCFYTLFELCGNPKWYENAKKVHDYFLQS----TIR-GDLVLNNKVIEMYGKCGSMTDARRVFDHMAD-----RS- 342 (623)
Q Consensus 275 p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~-pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~-----~~- 342 (623)
+ ...+++.+..+|...|++++|++.|++.++. |-. ....++..|..+|...|++++|++.|++..+ .+
T Consensus 179 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 258 (378)
T 3q15_A 179 IRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD 258 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh
Confidence 1 2457889999999999999999999988763 211 1246788999999999999999999998765 32
Q ss_pred --hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---C-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcCCCCC
Q 044791 343 --MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ---P-NEQTFLAVFSACGSADA---IEEAFIHFESMKSEFGISPG 413 (623)
Q Consensus 343 --~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~---P-d~~ty~~li~a~~~~g~---~e~A~~l~~~m~~~~g~~p~ 413 (623)
..++..+...|.+.|++++|+..|++..+..-. + ....+..+...+...++ +++|+.+++... .....
T Consensus 259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~---~~~~~ 335 (378)
T 3q15_A 259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN---LHAYI 335 (378)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC---ChhHH
Confidence 347888999999999999999999999875321 2 23456666666777888 888888877632 11122
Q ss_pred ccchhhHHHHHHhcCCHHHHHHHHHhhC
Q 044791 414 TEHYLGLVGVLGKCGHLFEAQQFIEQKL 441 (623)
Q Consensus 414 ~~ty~~Li~~~~k~g~~e~A~~lf~~~m 441 (623)
...+..|...|.+.|++++|.+.|++++
T Consensus 336 ~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 336 EACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3466778899999999999999999843
No 84
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.95 E-value=2.8e-09 Score=109.37 Aligned_cols=196 Identities=12% Similarity=-0.039 Sum_probs=128.9
Q ss_pred cCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHHHHHH
Q 044791 259 EGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIR-GD----LVLNNKVIEMYGKCGSMTDARR 333 (623)
Q Consensus 259 ~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~~y~~Li~~y~k~g~~~~A~~ 333 (623)
.+++++|.++|.+ ++..|...|++++|.+.|.+..+.... .+ ..+|+.+..+|.+.|++++|+.
T Consensus 29 ~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 97 (307)
T 2ifu_A 29 KPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ 97 (307)
T ss_dssp SCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred CCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 3567777666543 355666778888888887776653110 01 4577778888888888888888
Q ss_pred HHHHhhcC-----C----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHH
Q 044791 334 VFDHMADR-----S----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-----NEQTFLAVFSACGSADAIEEAFI 399 (623)
Q Consensus 334 lf~~m~~~-----~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-----d~~ty~~li~a~~~~g~~e~A~~ 399 (623)
.|++..+. + ..+|+.+...|.. |++++|+..|++.++..... ...+++.+...|.+.|++++|+.
T Consensus 98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88765431 1 2367777788877 88888888888876531111 14577788888888999999998
Q ss_pred HHHHHHhhcCCCCC----ccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH------HHHHHHHHHHHHcCChhHHHH
Q 044791 400 HFESMKSEFGISPG----TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA------EFWEALRNYARIHGDIDLEDH 468 (623)
Q Consensus 400 l~~~m~~~~g~~p~----~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~------~ty~~Li~a~~~~g~~~~A~~ 468 (623)
.|++......-..+ ..++..++.++...|++++|...|++++ ..|+. .....++.++ ..|+.+.+..
T Consensus 177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 88887753111111 2255666677777899999999999977 66642 2344455555 5677664444
No 85
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.95 E-value=2.1e-08 Score=110.73 Aligned_cols=214 Identities=10% Similarity=0.106 Sum_probs=166.8
Q ss_pred HHHHHHHHcCCC--C-CHHHHHHHHHHHhC-------CCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044791 263 KEAIELMDKGVK--A-DASCFYTLFELCGN-------PKWYE-------NAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 263 ~~A~~l~~~~~~--p-d~~ty~~Ll~~~~~-------~g~~~-------~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~ 325 (623)
++|+.+|++.+. | +...|..++..+.+ .|+++ +|.++|++.++.-.+-+...|..++..+.+.
T Consensus 255 ~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 366777765332 3 56678877777764 79987 8999999998632334689999999999999
Q ss_pred CCHHHHHHHHHHhhcC---Ch-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHH
Q 044791 326 GSMTDARRVFDHMADR---SM-DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFS-ACGSADAIEEAFIH 400 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~---~~-~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~-a~~~~g~~e~A~~l 400 (623)
|++++|..+|+++.+. +. ..|..++..+.+.|++++|..+|++..+.... +...|...+. .+...|+.++|..+
T Consensus 335 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~ 413 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKI 413 (530)
T ss_dssp TCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHH
Confidence 9999999999998753 32 47999999999999999999999999875321 2233332222 23468999999999
Q ss_pred HHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCC---CC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 401 FESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPF---EP--TAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 401 ~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~---~P--d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
|+...+.. .-+...|..+++.+.+.|+.++|..+|++++.. .| ....|...+......|+.+.+..+.+++.+
T Consensus 414 ~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 414 FELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99988652 225678899999999999999999999996543 23 245888889988999999999999999998
Q ss_pred cCCC
Q 044791 476 LDPS 479 (623)
Q Consensus 476 m~~~ 479 (623)
..+.
T Consensus 492 ~~p~ 495 (530)
T 2ooe_A 492 AFRE 495 (530)
T ss_dssp HTHH
T ss_pred HCch
Confidence 8764
No 86
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.90 E-value=3e-08 Score=85.85 Aligned_cols=124 Identities=17% Similarity=0.206 Sum_probs=63.3
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHc
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADN 356 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~ 356 (623)
|..+...+...|++++|+++++++.+.. ..+..++..+...+...|++++|+.+|+++.+ .+...|..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4455555555555555555555555542 12445555555555555555555555555432 2233455555555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 357 GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 357 g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
|++++|+.+|+++.+... .+..++..+...+...|++++|...|+++.
T Consensus 83 ~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 555555555555554321 134444455555555555555555555544
No 87
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.89 E-value=7.7e-08 Score=83.25 Aligned_cols=126 Identities=18% Similarity=0.253 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS 390 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~ 390 (623)
.|..+...|...|++++|+.+|+++.+ .+...|..+...+...|++++|..+|+++.+.+ ..+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 466677777778888888888877654 345567777777778888888888888877653 2245667777777778
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 391 ADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 391 ~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
.|++++|..+++++... . ..+..++..+..+|.+.|++++|..+|++++.
T Consensus 82 ~~~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh-C-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 88888888888777743 1 22455667777778888888888888777433
No 88
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.88 E-value=7.3e-08 Score=104.58 Aligned_cols=241 Identities=13% Similarity=0.066 Sum_probs=144.0
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCH---HHHHHHHHcCCCCCHHHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKV---KEAIELMDKGVKADASCFY 281 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~l~~~~~~pd~~ty~ 281 (623)
+.|++++|+++|++....+. ++... .|...|...|+. ++|++.|++.+..+...+.
T Consensus 15 ~~g~~~~A~~~~~~aa~~g~-~~A~~--------------------~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~ 73 (452)
T 3e4b_A 15 KRGDTVTAQQNYQQLAELGY-SEAQV--------------------GLADIQVGTRDPAQIKQAEATYRAAADTSPRAQA 73 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHTC-CTGGG--------------------TCC----------------------------CHH
T ss_pred hCCCHHHHHHHHHHHHHCCC-HHHHH--------------------HHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHH
Confidence 67999999999998844221 11111 112223445556 7888888765555666666
Q ss_pred HHHHHHhCCC-----CHHHHHHHHHHHHHcCCCC--------------------------------CHHHHHHHHHHHHH
Q 044791 282 TLFELCGNPK-----WYENAKKVHDYFLQSTIRG--------------------------------DLVLNNKVIEMYGK 324 (623)
Q Consensus 282 ~Ll~~~~~~g-----~~~~A~~l~~~m~~~g~~p--------------------------------d~~~y~~Li~~y~k 324 (623)
.|...+...+ +.++|+++|++..+.|... +...+..|...|..
T Consensus 74 ~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~ 153 (452)
T 3e4b_A 74 RLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRT 153 (452)
T ss_dssp HHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 6766554444 6778888888777765321 11122223333333
Q ss_pred cC----CHHHHHHHHHHhhcCChHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CC
Q 044791 325 CG----SMTDARRVFDHMADRSMDSWHLMINGYADNG---LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA----DA 393 (623)
Q Consensus 325 ~g----~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g---~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~----g~ 393 (623)
.+ ..++|..+++.....+...+..|...|...| ++++|+..|++..+.|. ++...+..|...|... ++
T Consensus 154 ~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d 232 (452)
T 3e4b_A 154 QGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPD 232 (452)
T ss_dssp HTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCC
T ss_pred CCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCC
Confidence 33 3455556666666667778889999999999 89999999999998874 3555556666666554 78
Q ss_pred HHHHHHHHHHHHhhcCCCCCccchhhHHHH-H--HhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-----ChhH
Q 044791 394 IEEAFIHFESMKSEFGISPGTEHYLGLVGV-L--GKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHG-----DIDL 465 (623)
Q Consensus 394 ~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~-~--~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g-----~~~~ 465 (623)
+++|++.|+... . | +...+..|..+ | ...|+.++|+++|+++.. .-+...+..|...|. .| +.++
T Consensus 233 ~~~A~~~~~~aa-~-g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 233 EKTAQALLEKIA-P-G---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-ADQPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHHG-G-G---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHHc-C-C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 999999998876 2 2 45566677776 4 468899999999998554 336777777877776 56 7886
Q ss_pred HHHHHHHHH
Q 044791 466 EDHAEELMV 474 (623)
Q Consensus 466 A~~~~~~~~ 474 (623)
|.+.++...
T Consensus 306 A~~~~~~Aa 314 (452)
T 3e4b_A 306 AEAHFEKAV 314 (452)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHHHHh
Confidence 666666544
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.85 E-value=8.1e-08 Score=92.42 Aligned_cols=134 Identities=10% Similarity=0.038 Sum_probs=94.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcC
Q 044791 317 KVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSAD 392 (623)
Q Consensus 317 ~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g 392 (623)
.+..+|.+.|++++|+..|++..+ .+...|..+...|...|++++|+..|++.++. .| +..+|..+..+|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHh
Confidence 388888899999999999988765 35568888999999999999999999998886 34 5677888877776655
Q ss_pred C--HHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 044791 393 A--IEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRN 455 (623)
Q Consensus 393 ~--~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~ 455 (623)
+ .+.+...+.... ...|....+..+..++...|++++|+..|++++.+.|+......|.+
T Consensus 137 ~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 137 EQEKKKLETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHHHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4 334444454433 22222223334455667788999999999998888898765554443
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.84 E-value=5.6e-08 Score=111.16 Aligned_cols=185 Identities=12% Similarity=-0.013 Sum_probs=150.9
Q ss_pred hCCCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHc
Q 044791 288 GNPKWYENAKKVHDYFL--------QSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADN 356 (623)
Q Consensus 288 ~~~g~~~~A~~l~~~m~--------~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~ 356 (623)
...|++++|++.+++.+ +. ...+...+..+..+|.+.|++++|++.|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999998 43 234578899999999999999999999998875 4667999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHH
Q 044791 357 GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQ 435 (623)
Q Consensus 357 g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~ 435 (623)
|++++|+..|++.++.... +...|..+..++.+.|++++ ++.|++..+. .| +...|..+..+|.+.|++++|++
T Consensus 481 g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999986322 56788899999999999999 9999998843 45 56788899999999999999999
Q ss_pred HHHhhCCCCCCH-HHHHHHHHHHHHcCC-----hhHHHHHHHHHHhcCC
Q 044791 436 FIEQKLPFEPTA-EFWEALRNYARIHGD-----IDLEDHAEELMVDLDP 478 (623)
Q Consensus 436 lf~~~m~~~Pd~-~ty~~Li~a~~~~g~-----~~~A~~~~~~~~~m~~ 478 (623)
.|++++...|+. ..|..+..++...|+ .+...++.+.+..+..
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~ 604 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPP 604 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCT
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCC
Confidence 999988888874 677777777766665 3555566776766543
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.82 E-value=9.4e-08 Score=97.71 Aligned_cols=213 Identities=14% Similarity=0.103 Sum_probs=154.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTD 330 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~ 330 (623)
-+..+|...|+++.+. .-.|....+..+...+. .+ |++.|+++++.+ .++..++..+..+|...|++++
T Consensus 50 ~~~Rs~iAlg~~~~~~-----~~~~~~~a~~~la~~~~-~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~ee 118 (310)
T 3mv2_B 50 YKAKTLLALGQYQSQD-----PTSKLGKVLDLYVQFLD-TK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDK 118 (310)
T ss_dssp HHHHHHHHTTCCCCCC-----SSSTTHHHHHHHHHHHT-TT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHcCCCccCC-----CCCHHHHHHHHHHHHhc-cc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHH
Confidence 4567888888876421 22344445555444443 22 778888887765 4566666788999999999999
Q ss_pred HHHHHHHhhcC-----ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHh--cC--CHHH
Q 044791 331 ARRVFDHMADR-----SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-----NEQTFLAVFSACGS--AD--AIEE 396 (623)
Q Consensus 331 A~~lf~~m~~~-----~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-----d~~ty~~li~a~~~--~g--~~e~ 396 (623)
|++++.+.... +...+-.++..+.+.|+.++|.++|++|.+. .| +..+...|+.++.. .| +..+
T Consensus 119 AL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~ 196 (310)
T 3mv2_B 119 SLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATS 196 (310)
T ss_dssp HHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTH
T ss_pred HHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHH
Confidence 99999988554 3458889999999999999999999999875 56 35666666666332 34 8999
Q ss_pred HHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCC----------CC-CHHHHHHHHHHHHHcCChhH
Q 044791 397 AFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPF----------EP-TAEFWEALRNYARIHGDIDL 465 (623)
Q Consensus 397 A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~----------~P-d~~ty~~Li~a~~~~g~~~~ 465 (623)
|..+|+++..+ .|+..+-..|+.++.+.|++++|++.++.+... .| |..+.-.+|......|+ +
T Consensus 197 A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~ 271 (310)
T 3mv2_B 197 NFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--D 271 (310)
T ss_dssp HHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--T
T ss_pred HHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--H
Confidence 99999998754 344334455666899999999999999873332 24 55677567666666786 6
Q ss_pred HHHHHHHHHhcCCCCC
Q 044791 466 EDHAEELMVDLDPSKA 481 (623)
Q Consensus 466 A~~~~~~~~~m~~~~~ 481 (623)
|.+.++.+.+..|++.
T Consensus 272 a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 272 TEDLTNQLVKLDHEHA 287 (310)
T ss_dssp THHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHhCCCCh
Confidence 7899999999887753
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.81 E-value=1.3e-07 Score=93.82 Aligned_cols=182 Identities=8% Similarity=-0.058 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----C-hHHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD---LVLNNKVIEMYGKCGSMTDARRVFDHMADR-----S-MDSWH 347 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-----~-~~tyn 347 (623)
...+-.+...+.+.|++++|++.|+++++... -+ ..++..+..+|.+.|++++|+..|++..+. . ...|.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 44555555666666666666666666655421 12 455556666666666666666666665432 1 12455
Q ss_pred HHHHHHHH--------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchh
Q 044791 348 LMINGYAD--------NGLGDEGLQLFEQMRKLGLQPNE-QTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYL 418 (623)
Q Consensus 348 ~Li~~~~~--------~g~~eeA~~l~~eM~~~g~~Pd~-~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~ 418 (623)
.+..++.. .|++++|+..|++.++.. |+. .....+ ..+..+... ....+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~-----~~~~~~ 152 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK-----LARKQY 152 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH-----HHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH-----HHHHHH
Confidence 55555555 666666666666665542 221 111111 000000000 000134
Q ss_pred hHHHHHHhcCCHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHc----------CChhHHHHHHHHHHhcCCCC
Q 044791 419 GLVGVLGKCGHLFEAQQFIEQKLPFEPT----AEFWEALRNYARIH----------GDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 419 ~Li~~~~k~g~~e~A~~lf~~~m~~~Pd----~~ty~~Li~a~~~~----------g~~~~A~~~~~~~~~m~~~~ 480 (623)
.+...|.+.|++++|+..|++++...|+ ...+..+..+|... |++++|...++.+.+..|+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 228 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDS 228 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCC
Confidence 5677888999999999999986555554 34667777777766 88899999999988877664
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.81 E-value=5.6e-08 Score=96.47 Aligned_cols=185 Identities=15% Similarity=0.093 Sum_probs=116.6
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHcC--CCCC----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CC-CHHHH
Q 044791 244 QVLPPSVADLARLCQEGKVKEAIELMDKG--VKAD----ASCFYTLFELCGNPKWYENAKKVHDYFLQSTI-RG-DLVLN 315 (623)
Q Consensus 244 ~~~~~~~~li~~~~~~g~~~~A~~l~~~~--~~pd----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~-~p-d~~~y 315 (623)
.....+..+...+.+.|++++|++.|++- ..|+ ..++..+..++.+.|++++|+..|+++++... .+ ...++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 34566777888899999999999999863 2343 56788999999999999999999999998632 12 25677
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHhhcCCh---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044791 316 NKVIEMYGK--------CGSMTDARRVFDHMADRSM---DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAV 384 (623)
Q Consensus 316 ~~Li~~y~k--------~g~~~~A~~lf~~m~~~~~---~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~l 384 (623)
..+..+|.+ .|++++|+..|+++.+.+. ..+.++.. +..+... -...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~--------------~~~~~~~----~~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQK--------------IRELRAK----LARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHH--------------HHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHH--------------HHHHHHH----HHHHHHHH
Confidence 888889999 9999999999999875322 22222110 0000000 00113444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhc----------CCHHHHHHHHHhhCCCCCC
Q 044791 385 FSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKC----------GHLFEAQQFIEQKLPFEPT 446 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~----------g~~e~A~~lf~~~m~~~Pd 446 (623)
...|.+.|++++|+..|+.+.+...-.+ ....+..+..+|.+. |++++|+..|++++...|+
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 5555666666666666666654311111 122344455555544 6666666666664443443
No 94
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.80 E-value=6.1e-08 Score=99.25 Aligned_cols=219 Identities=9% Similarity=-0.026 Sum_probs=148.8
Q ss_pred CCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcCCCC-----C----
Q 044791 206 NQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKGVKA-----D---- 276 (623)
Q Consensus 206 ~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~~~p-----d---- 276 (623)
.|++++|.+++++..+.. +.. ++............+......|...|++++|++.|.+.+.. +
T Consensus 4 ~~~~~eA~~~~~~a~k~~--~~~------~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 75 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL--KTS------FMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHA 75 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH--CCC------SSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHc--ccc------ccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 577888988888763311 110 01000011112334556677889999999999998642111 1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----C----
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQS----TIRG-DLVLNNKVIEMYGKCGSMTDARRVFDHMADR-----S---- 342 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-----~---- 342 (623)
..+|+.+..+|.+.|++++|+..|++.++. |-.. -..+++.+..+|.+ |++++|+..|++..+. +
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~ 154 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence 357889999999999999999999988764 2111 14678889999988 9999999999987642 1
Q ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCcc--
Q 044791 343 MDSWHLMINGYADNGLGDEGLQLFEQMRKL----GLQPN-EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTE-- 415 (623)
Q Consensus 343 ~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~----g~~Pd-~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~-- 415 (623)
..+|+.+...|.+.|++++|+..|++.++. +..+. ..++..++.++...|++++|...|++.. ...-..+..
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~ 233 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDC 233 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHH
Confidence 348999999999999999999999998863 22111 2366777778888899999999999887 311111111
Q ss_pred -chhhHHHHHHhcCCHHHHHH
Q 044791 416 -HYLGLVGVLGKCGHLFEAQQ 435 (623)
Q Consensus 416 -ty~~Li~~~~k~g~~e~A~~ 435 (623)
....++.++ ..|+.+.+.+
T Consensus 234 ~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 234 AALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHHHH-HhcCHHHHHH
Confidence 233344444 5677666655
No 95
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.76 E-value=2.7e-07 Score=89.67 Aligned_cols=185 Identities=10% Similarity=0.021 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCh------HHHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIR-G-DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSM------DSWHL 348 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~-p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~------~tyn~ 348 (623)
...+..+...+.+.|++++|+..|+++++.... + ....+..+..+|.+.|++++|+..|+++.+.+. .+|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 445566667777788888888888888775321 1 135667777888888888888888887764211 14444
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCcc-c-----------
Q 044791 349 MINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTE-H----------- 416 (623)
Q Consensus 349 Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~-t----------- 416 (623)
+..++...|.. .++ .|..+...+...|+.++|+..|+++++. .|+.. .
T Consensus 84 ~g~~~~~~~~~-----~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~ 143 (225)
T 2yhc_A 84 RGLTNMALDDS-----ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLK 143 (225)
T ss_dssp HHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhhhhh-----hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHH
Confidence 44455442210 000 0111112222344555555555555422 22211 1
Q ss_pred ------hhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCC
Q 044791 417 ------YLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA----EFWEALRNYARIHGDIDLEDHAEELMVDLDPSKA 481 (623)
Q Consensus 417 ------y~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~----~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~ 481 (623)
...+...|.+.|++++|+..|++++...|+. ..+..+..+|.+.|+.++|.+.++.+....+.+.
T Consensus 144 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 144 DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 1245667889999999999999966666653 4678888999999999999999999988777654
No 96
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.75 E-value=1.5e-07 Score=90.43 Aligned_cols=129 Identities=8% Similarity=-0.063 Sum_probs=98.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHH
Q 044791 347 HLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLG 425 (623)
Q Consensus 347 n~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~ 425 (623)
+.+..+|.+.|++++|+..|++.++... -+...+..+..++...|++++|+..|++..+ +.| +..+|..|..+|.
T Consensus 58 ~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~ 133 (208)
T 3urz_A 58 TELALAYKKNRNYDKAYLFYKELLQKAP-NNVDCLEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHH
Confidence 3488999999999999999999998642 2678899999999999999999999999985 355 4677888888887
Q ss_pred hcCC--HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 426 KCGH--LFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 426 k~g~--~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
..|+ .+++...|+..+...|....+..+..++...|++++|...++...++.|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 134 LTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 6654 55667777773333333334445556677789999999999999887654
No 97
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.74 E-value=1e-07 Score=109.01 Aligned_cols=177 Identities=10% Similarity=-0.033 Sum_probs=147.3
Q ss_pred HHcCCHHHHHHHHHcCC----------CC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 044791 257 CQEGKVKEAIELMDKGV----------KA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 257 ~~~g~~~~A~~l~~~~~----------~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~ 325 (623)
...|++++|++.|++.+ .| +...+..+..++...|++++|++.|+++++.. .-+...|..+..+|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999997644 24 45788899999999999999999999999864 33788999999999999
Q ss_pred CCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044791 326 GSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFE 402 (623)
Q Consensus 326 g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~ 402 (623)
|++++|++.|++..+ .+...|..+..+|.+.|++++ +..|++.++.... +...|..+..++.+.|++++|++.|+
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999875 355689999999999999999 9999999986422 56789999999999999999999999
Q ss_pred HHHhhcCCCCC-ccchhhHHHHHHhcC--------CHHHHHHHHHh
Q 044791 403 SMKSEFGISPG-TEHYLGLVGVLGKCG--------HLFEAQQFIEQ 439 (623)
Q Consensus 403 ~m~~~~g~~p~-~~ty~~Li~~~~k~g--------~~e~A~~lf~~ 439 (623)
+.. .+.|+ ...|..+..+|...| ++++|.+.++.
T Consensus 559 ~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~ 601 (681)
T 2pzi_A 559 EVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEA 601 (681)
T ss_dssp TSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHT
T ss_pred hhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhh
Confidence 887 55665 566777777776644 47777777777
No 98
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=6.4e-07 Score=85.30 Aligned_cols=124 Identities=8% Similarity=-0.048 Sum_probs=108.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 044791 249 SVADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSM 328 (623)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~ 328 (623)
+..+...+...|++++|++.|++.+.++..+|..+..++.+.|++++|++.|++.++.. ..+..+|..+..+|.+.|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34566778899999999999999888899999999999999999999999999998864 34688999999999999999
Q ss_pred HHHHHHHHHhhcC---C----------------hHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 044791 329 TDARRVFDHMADR---S----------------MDSWHLMINGYADNGLGDEGLQLFEQMRKLG 373 (623)
Q Consensus 329 ~~A~~lf~~m~~~---~----------------~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g 373 (623)
++|++.|++..+. + ...|..+..+|.+.|++++|+..|++..+..
T Consensus 88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999988752 1 2588899999999999999999999998753
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.71 E-value=2.2e-07 Score=94.92 Aligned_cols=190 Identities=12% Similarity=0.071 Sum_probs=138.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHcCC---CCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHc
Q 044791 250 VADLARLCQEGKVKEAIELMDKGV---KADASCFYTLFELCGNPKWYENAKKVHDYFLQSTI-RGDLVLNNKVIEMYGKC 325 (623)
Q Consensus 250 ~~li~~~~~~g~~~~A~~l~~~~~---~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~~y~~Li~~y~k~ 325 (623)
..++..|...+ |+..|++-+ .++..++..+..++...|++++|++++.+.+..|- .-+...+-.++.+|.+.
T Consensus 74 ~~~la~~~~~~----a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~ 149 (310)
T 3mv2_B 74 LDLYVQFLDTK----NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLN 149 (310)
T ss_dssp HHHHHHHHTTT----CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccc----HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHC
Confidence 34455555533 566666433 46677777888999999999999999999877653 23678888999999999
Q ss_pred CCHHHHHHHHHHhhcCCh-------HHHHHHHHH--HHHcC--ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044791 326 GSMTDARRVFDHMADRSM-------DSWHLMING--YADNG--LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAI 394 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~~~-------~tyn~Li~~--~~~~g--~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~ 394 (623)
|+.+.|.++|++|.+.+. .+...|+.+ ....| ++.+|+.+|+++.+. .|+..+-..++.++...|++
T Consensus 150 ~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~ 227 (310)
T 3mv2_B 150 NNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNI 227 (310)
T ss_dssp TCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCH
T ss_pred CCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCH
Confidence 999999999999976443 455566666 33334 899999999999765 45544445555688999999
Q ss_pred HHHHHHHHHHHhhc----CC---CC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 044791 395 EEAFIHFESMKSEF----GI---SP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 395 e~A~~l~~~m~~~~----g~---~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
++|.+.++.+.+.+ .. .| +..+...+|......|+ +|.++++++....|+-
T Consensus 228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 99999999776432 11 23 56666566666666787 8899998844456653
No 100
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.70 E-value=2.9e-07 Score=93.39 Aligned_cols=171 Identities=9% Similarity=-0.051 Sum_probs=113.6
Q ss_pred HHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--CChH
Q 044791 267 ELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD--RSMD 344 (623)
Q Consensus 267 ~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~--~~~~ 344 (623)
+.++..+..+...+..+...+...|++++|+.+|+++++.. +-+...+..|..+|.+.|++++|+.+|+++.. ++..
T Consensus 107 ~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~ 185 (287)
T 3qou_A 107 ALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR 185 (287)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH
T ss_pred HHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH
Confidence 33333333344556677777778888888888888877753 22567777788888888888888888887754 3332
Q ss_pred -HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHH
Q 044791 345 -SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGV 423 (623)
Q Consensus 345 -tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~ 423 (623)
.+..+...+...++.++|+..|++..+... -+...+..+..++...|++++|+..|.++.+...-..+...+..|+..
T Consensus 186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P-~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 186 YQGLVAQIELLXQAADTPEIQQLQQQVAENP-EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCccHHHHHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 222223336667777778888877776532 245677777777888888888888888777541111124567777777
Q ss_pred HHhcCCHHHHHHHHHh
Q 044791 424 LGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 424 ~~k~g~~e~A~~lf~~ 439 (623)
|...|+.++|...|++
T Consensus 265 ~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 265 LAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHCTTCHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHH
Confidence 7777887777777776
No 101
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.69 E-value=6.8e-07 Score=86.26 Aligned_cols=172 Identities=10% Similarity=-0.023 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-ChHHHHHHHHHHHHcC----ChHHHHHHHHHH
Q 044791 295 NAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR-SMDSWHLMINGYADNG----LGDEGLQLFEQM 369 (623)
Q Consensus 295 ~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-~~~tyn~Li~~~~~~g----~~eeA~~l~~eM 369 (623)
+|++.|++..+.| +...+..|..+|...+++++|++.|++..+. +...+..|...|.. + ++++|+.+|++.
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A 79 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA 79 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence 4556666666654 5566666666666677777777777666543 33456666666655 5 677777777776
Q ss_pred HHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCC---ccchhhHHHHHHh----cCCHHHHHHHHH
Q 044791 370 RKLGLQPNEQTFLAVFSACGS----ADAIEEAFIHFESMKSEFGISPG---TEHYLGLVGVLGK----CGHLFEAQQFIE 438 (623)
Q Consensus 370 ~~~g~~Pd~~ty~~li~a~~~----~g~~e~A~~l~~~m~~~~g~~p~---~~ty~~Li~~~~k----~g~~e~A~~lf~ 438 (623)
.+.| +..++..|...|.. .+++++|++.|++..+. .+. ...+..|..+|.. .++.++|+.+|+
T Consensus 80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 6654 45556666666655 66777777777666532 221 4556666666666 566777777777
Q ss_pred hhCCCCCCHHHHHHHHHHHHHc-C-----ChhHHHHHHHHHHhc
Q 044791 439 QKLPFEPTAEFWEALRNYARIH-G-----DIDLEDHAEELMVDL 476 (623)
Q Consensus 439 ~~m~~~Pd~~ty~~Li~a~~~~-g-----~~~~A~~~~~~~~~m 476 (623)
++.....+...+..|...|... | +.++|...+++..+.
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 7444323444555555555543 2 566666666655553
No 102
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.68 E-value=3.3e-08 Score=90.16 Aligned_cols=140 Identities=8% Similarity=0.021 Sum_probs=75.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCCh---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044791 318 VIEMYGKCGSMTDARRVFDHMADRSM---DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAI 394 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~~~~---~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~ 394 (623)
|..++...|++++|++.|......+. ..+..|...|.+.|++++|+..|++.++... -+..+|..+..+|...|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCch
Confidence 34444455666666666665554322 2444556666666666666666666665421 1455666666666666666
Q ss_pred HHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHH-HHhhCCCCC-CHHHHHHHHHHHHHcC
Q 044791 395 EEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQF-IEQKLPFEP-TAEFWEALRNYARIHG 461 (623)
Q Consensus 395 e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~l-f~~~m~~~P-d~~ty~~Li~a~~~~g 461 (623)
++|+..|+...+ +.| +..+|..|..+|.+.|+.++|.+. +++++.+.| +..+|......+...|
T Consensus 82 ~~A~~~~~~al~---~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 82 DKAVECYRRSVE---LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 666666666653 234 345566666666666666554443 355444445 3344444444444443
No 103
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=5.1e-07 Score=86.01 Aligned_cols=134 Identities=7% Similarity=-0.061 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD 392 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g 392 (623)
..+..+...+.+.|++++|++.|++...++...|..+...|.+.|++++|+..|++..+.. .-+..+|..+..++...|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 3455667777788888888888888777777788888888888888888888888887753 235677778888888888
Q ss_pred CHHHHHHHHHHHHhhcCCC-------------C-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 044791 393 AIEEAFIHFESMKSEFGIS-------------P-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 393 ~~e~A~~l~~~m~~~~g~~-------------p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
++++|++.|+...+...-. | ....+..+..+|.+.|++++|.+.|++++...|+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 8888888888877531111 0 11456667777777777777777777766655643
No 104
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.66 E-value=1.6e-07 Score=87.54 Aligned_cols=57 Identities=5% Similarity=-0.110 Sum_probs=26.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMA 339 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~ 339 (623)
.+...+...|++++|+..|++.++.. +-+...+..+..+|.+.|++++|+..|++..
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 67 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIP 67 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence 33444444555555555555444321 1134444555555555555555555555443
No 105
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.64 E-value=1.2e-06 Score=82.42 Aligned_cols=150 Identities=16% Similarity=0.077 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc------C---ChHHHHHHHHHHHHcCCh
Q 044791 289 NPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD------R---SMDSWHLMINGYADNGLG 359 (623)
Q Consensus 289 ~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~------~---~~~tyn~Li~~~~~~g~~ 359 (623)
..|++++|+++++.+... ......++..+...|...|++++|+..|++..+ . ...++..+...|...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644333221 112355666666666666776666666665543 1 122566666667777777
Q ss_pred HHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----ccchhhHHHHHHhcCC
Q 044791 360 DEGLQLFEQMRKL----GLQP--NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG----TEHYLGLVGVLGKCGH 429 (623)
Q Consensus 360 eeA~~l~~eM~~~----g~~P--d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~----~~ty~~Li~~~~k~g~ 429 (623)
++|+..|++..+. +-.+ ...++..+...+...|++++|...+++......-..+ ..++..+..+|...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 7777777666542 1111 1344566666677777777777777666532111111 2234566677777788
Q ss_pred HHHHHHHHHh
Q 044791 430 LFEAQQFIEQ 439 (623)
Q Consensus 430 ~e~A~~lf~~ 439 (623)
+++|.+.|++
T Consensus 163 ~~~A~~~~~~ 172 (203)
T 3gw4_A 163 LLEAQQHWLR 172 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877777
No 106
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.63 E-value=5.8e-06 Score=89.50 Aligned_cols=215 Identities=11% Similarity=0.039 Sum_probs=135.7
Q ss_pred HHHHHHHHcCC----HHHHHHHHHcCCCCCHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 251 ADLARLCQEGK----VKEAIELMDKGVKADASCFYTLFELCGNPK---WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYG 323 (623)
Q Consensus 251 ~li~~~~~~g~----~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g---~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~ 323 (623)
.|...|...+. .++|..+++.....+..++..|...|.+.| +.++|++.|++..+.|. ++...+..|..+|.
T Consensus 146 ~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~ 224 (452)
T 3e4b_A 146 AQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLG 224 (452)
T ss_dssp HHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh
Confidence 44444545453 333444444433333447777777777777 78888888888877763 35565566777775
Q ss_pred Hc----CCHHHHHHHHHHhhcCChHHHHHHHHH-H--HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----
Q 044791 324 KC----GSMTDARRVFDHMADRSMDSWHLMING-Y--ADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD---- 392 (623)
Q Consensus 324 k~----g~~~~A~~lf~~m~~~~~~tyn~Li~~-~--~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g---- 392 (623)
.. ++.++|++.|++....+...+..|... | ...+++++|+..|++..+.| +...+..|...|. .|
T Consensus 225 ~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 225 DATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp CGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSC
T ss_pred CCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCC
Confidence 54 678888888887773344566666666 3 45778888888888887766 5666666666665 44
Q ss_pred -CHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHh----cCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCh
Q 044791 393 -AIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGK----CGHLFEAQQFIEQKLPFEPTAEFWEALRNYARI----HGDI 463 (623)
Q Consensus 393 -~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k----~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~----~g~~ 463 (623)
++++|++.|++.. . -+...+..|..+|.. ..+.++|..+|+++.. .-+...+..|...|.. ..+.
T Consensus 301 ~d~~~A~~~~~~Aa-~----g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-~g~~~A~~~Lg~~y~~G~g~~~d~ 374 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV-G----REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-NGQNSADFAIAQLFSQGKGTKPDP 374 (452)
T ss_dssp CCHHHHHHHHHTTT-T----TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-TTCTTHHHHHHHHHHSCTTBCCCH
T ss_pred CCHHHHHHHHHHHh-C----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-hChHHHHHHHHHHHHhCCCCCCCH
Confidence 7888888887655 2 245556666666665 3378888888887443 2233444455555542 2356
Q ss_pred hHHHHHHHHHHhc
Q 044791 464 DLEDHAEELMVDL 476 (623)
Q Consensus 464 ~~A~~~~~~~~~m 476 (623)
++|...+++..+.
T Consensus 375 ~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 375 LNAYVFSQLAKAQ 387 (452)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHC
Confidence 6666666666553
No 107
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.63 E-value=4.2e-07 Score=84.62 Aligned_cols=157 Identities=10% Similarity=0.091 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCC--C-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKGVK--A-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEM-YG 323 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~~~--p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~-y~ 323 (623)
....+...+.+.|++++|+..|++.+. | +...+..+..++...|++++|+..++++++.. |+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 344667788999999999999998664 3 45778999999999999999999999987753 355444333222 22
Q ss_pred HcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 044791 324 KCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAFI 399 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~~ 399 (623)
+.+...+|+..|++..+ .+...+..+...+...|++++|+..|+++++....+ +...+..+..++...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 22233346777776654 245577778888888888888888888887654332 24567777778888888888888
Q ss_pred HHHHHHh
Q 044791 400 HFESMKS 406 (623)
Q Consensus 400 l~~~m~~ 406 (623)
.|++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776653
No 108
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.63 E-value=3.2e-06 Score=86.72 Aligned_cols=218 Identities=11% Similarity=0.102 Sum_probs=170.3
Q ss_pred HHHcCCH-HHHHHHHHc--CCCCCH-HHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHc
Q 044791 256 LCQEGKV-KEAIELMDK--GVKADA-SCFYTLFELCGNPK--WYENAKKVHDYFLQSTIRGDLVLNNKVIEMY----GKC 325 (623)
Q Consensus 256 ~~~~g~~-~~A~~l~~~--~~~pd~-~ty~~Ll~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y----~k~ 325 (623)
..+.|.. ++|++++++ .+.|+. .+|+.-..++...| ++++++++++.++....+ +..+|+.-..++ .+.
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhc
Confidence 3344444 689998876 445654 45888888888888 999999999999987533 567777665555 555
Q ss_pred ---CCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----
Q 044791 326 ---GSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGD--EGLQLFEQMRKLGLQPNEQTFLAVFSACGSADA---- 393 (623)
Q Consensus 326 ---g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~e--eA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~---- 393 (623)
+++++++++++++.+ ++..+|+.-.-.+.+.|+++ ++++++++|.+.... |...|+.-...+.+.|+
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchh
Confidence 789999999999986 45568888888899999998 999999999987654 77788877777777776
Q ss_pred --HHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHH-HHHHHHhhCCC----CCCHHHHHHHHHHHHHcCChhH
Q 044791 394 --IEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFE-AQQFIEQKLPF----EPTAEFWEALRNYARIHGDIDL 465 (623)
Q Consensus 394 --~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~-A~~lf~~~m~~----~Pd~~ty~~Li~a~~~~g~~~~ 465 (623)
++++++.++.++.. .| |...|+-+...+.+.|+..+ +.+++++.... ..+...+..|..+|.+.|+.++
T Consensus 200 ~~~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~ 276 (306)
T 3dra_A 200 NTIDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNE 276 (306)
T ss_dssp HHHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 89999999998853 44 67788888888888888444 55677763332 2367889999999999999999
Q ss_pred HHHHHHHHHh-cCC
Q 044791 466 EDHAEELMVD-LDP 478 (623)
Q Consensus 466 A~~~~~~~~~-m~~ 478 (623)
|.++++.+.+ .+|
T Consensus 277 A~~~~~~l~~~~Dp 290 (306)
T 3dra_A 277 SRTVYDLLKSKYNP 290 (306)
T ss_dssp HHHHHHHHHHTTCG
T ss_pred HHHHHHHHHhccCh
Confidence 9999999886 554
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.61 E-value=2.4e-07 Score=93.91 Aligned_cols=161 Identities=11% Similarity=0.007 Sum_probs=131.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH-H
Q 044791 309 RGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLA-V 384 (623)
Q Consensus 309 ~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~-l 384 (623)
..+...+..+...+.+.|++++|+.+|++..+ .+...+..|...+.+.|++++|+.+|++..+. .|+...... +
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHH
Confidence 44567788889999999999999999998865 35568999999999999999999999998765 455543333 3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHc
Q 044791 385 FSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT---AEFWEALRNYARIH 460 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd---~~ty~~Li~a~~~~ 460 (623)
...+...++.++|+..|++.... .| +...+..|..+|...|++++|++.|++++...|+ ...+..|+..|...
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~---~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~ 268 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAE---NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhc---CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHc
Confidence 33466778888899999888853 45 5678889999999999999999999997766665 57899999999999
Q ss_pred CChhHHHHHHHHHH
Q 044791 461 GDIDLEDHAEELMV 474 (623)
Q Consensus 461 g~~~~A~~~~~~~~ 474 (623)
|+.++|...++...
T Consensus 269 g~~~~a~~~~r~al 282 (287)
T 3qou_A 269 GTGDALASXYRRQL 282 (287)
T ss_dssp CTTCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 99998887777654
No 110
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.60 E-value=1.8e-06 Score=87.33 Aligned_cols=202 Identities=7% Similarity=-0.050 Sum_probs=134.1
Q ss_pred HHHHHcC-CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 044791 266 IELMDKG-VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVL---NNKVIEMYGKCGSMTDARRVFDHMADR 341 (623)
Q Consensus 266 ~~l~~~~-~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~---y~~Li~~y~k~g~~~~A~~lf~~m~~~ 341 (623)
+.-++.| ..|+..+...|...+.-.- + .+ .......+... +...+..+.+.|++++|.+++++..+.
T Consensus 34 ~s~~e~g~~~~~~~~l~~i~~~l~~~~--~---~~----~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 34 VSRIESGAVYPSMDILQGIAAKLQIPI--I---HF----YEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHTTSCCCCHHHHHHHHHHHTCCT--H---HH----HHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCcCH--H---HH----hCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 3444554 3577777777766665321 1 11 11112222333 333467788889999999999887653
Q ss_pred C---------hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 342 S---------MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ-PN----EQTFLAVFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 342 ~---------~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~-Pd----~~ty~~li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
. ...|..+...+...|++++|+..|++..+.... .+ ..+|+.+..+|...|++++|+..|+++.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 113445666677778899999999998874322 22 336888888999999999999999888742
Q ss_pred cC----CCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCC------CCCC-HHHHHHHHHHHHHcCC-hhHHHHHHHHHH
Q 044791 408 FG----ISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP------FEPT-AEFWEALRNYARIHGD-IDLEDHAEELMV 474 (623)
Q Consensus 408 ~g----~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~------~~Pd-~~ty~~Li~a~~~~g~-~~~A~~~~~~~~ 474 (623)
.. ..+ ...+|..+...|.+.|++++|++++++++. .... ..+|..+..+|...|+ .++|.+.++...
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 11 111 234778888889999999999999888443 1122 4688888888999994 588888777765
Q ss_pred hc
Q 044791 475 DL 476 (623)
Q Consensus 475 ~m 476 (623)
++
T Consensus 265 ~i 266 (293)
T 3u3w_A 265 FF 266 (293)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 111
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.59 E-value=9.9e-07 Score=85.65 Aligned_cols=95 Identities=12% Similarity=-0.046 Sum_probs=69.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcCC--CCC----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-CCH-HHHHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKGV--KAD----ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIR-GDL-VLNNKV 318 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~~--~pd----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~-pd~-~~y~~L 318 (623)
..+..+...+.+.|++++|+..|++-+ .|+ ...+..+..++.+.|++++|++.|+++++.... +.. ..+-.+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 455667788999999999999997632 233 357888999999999999999999999986322 111 245555
Q ss_pred HHHHHH------------------cCCHHHHHHHHHHhhcC
Q 044791 319 IEMYGK------------------CGSMTDARRVFDHMADR 341 (623)
Q Consensus 319 i~~y~k------------------~g~~~~A~~lf~~m~~~ 341 (623)
..+|.+ .|+.++|+..|+++.+.
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 125 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG 125 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH
Confidence 555554 46778888888877653
No 112
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.58 E-value=2.2e-06 Score=86.74 Aligned_cols=154 Identities=12% Similarity=0.112 Sum_probs=92.7
Q ss_pred HHHHHHHcCCHHHHHHHHHcC-----CCCCH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-CC----HHHHHH
Q 044791 252 DLARLCQEGKVKEAIELMDKG-----VKADA----SCFYTLFELCGNPKWYENAKKVHDYFLQSTIR-GD----LVLNNK 317 (623)
Q Consensus 252 li~~~~~~g~~~~A~~l~~~~-----~~pd~----~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~~y~~ 317 (623)
.+..+...|++++|++++++. ..++. ..+..+...+...|++++|++.|+++++.... .+ ..+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 356667777777777777541 11221 12334566666667777777777777763221 12 335777
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhc------CC----hHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-HHHHH
Q 044791 318 VIEMYGKCGSMTDARRVFDHMAD------RS----MDSWHLMINGYADNGLGDEGLQLFEQMRKL----GLQPN-EQTFL 382 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~------~~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~----g~~Pd-~~ty~ 382 (623)
|..+|...|++++|+..|+++.+ .+ ..+|..+...|.+.|++++|+..+++.++. +.... ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 77777777777777777776652 11 125666777777777777777777766532 22222 45666
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHH
Q 044791 383 AVFSACGSAD-AIEEAFIHFESMK 405 (623)
Q Consensus 383 ~li~a~~~~g-~~e~A~~l~~~m~ 405 (623)
.+..++.+.| ..++|.+.|++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 6666677777 3567776666555
No 113
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.57 E-value=7.8e-07 Score=90.06 Aligned_cols=161 Identities=7% Similarity=-0.079 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCC---h------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HH
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMADRS---M------DSWHLMINGYADNGLGDEGLQLFEQMRKLGL---QPN--EQ 379 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~~~---~------~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~---~Pd--~~ 379 (623)
.+...+..+...|++++|++.+++..+.. . ..+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 33445555666666666666665443211 0 1233344445556666666666666654211 111 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-----ccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC-------H
Q 044791 380 TFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-----TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT-------A 447 (623)
Q Consensus 380 ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-----~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd-------~ 447 (623)
+|+.+...|...|++++|+..|++........++ ..+|..+..+|.+.|++++|+++|++++.+.++ .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 5666666666666666666666665521111111 135566666666666666666666663321111 3
Q ss_pred HHHHHHHHHHHHcCChhHH-HHHHHHHH
Q 044791 448 EFWEALRNYARIHGDIDLE-DHAEELMV 474 (623)
Q Consensus 448 ~ty~~Li~a~~~~g~~~~A-~~~~~~~~ 474 (623)
.+|..+..+|...|+.++| ...++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5566666666666666666 44444433
No 114
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.56 E-value=5.2e-07 Score=100.43 Aligned_cols=145 Identities=8% Similarity=-0.018 Sum_probs=74.3
Q ss_pred CCHHHHHHHHHcCCC--C-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044791 260 GKVKEAIELMDKGVK--A-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFD 336 (623)
Q Consensus 260 g~~~~A~~l~~~~~~--p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~ 336 (623)
|++++|++.|++.+. | +...|..+..++...|++++|++.|++.++.. .-+..++..+..+|.+.|++++|++.|+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555666666654332 2 24455666666666666666666666665542 2245566666666666666666666666
Q ss_pred Hhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 044791 337 HMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA---DAIEEAFIHFESMKS 406 (623)
Q Consensus 337 ~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~---g~~e~A~~l~~~m~~ 406 (623)
+..+ .+...|..+..+|.+.|++++|++.|++..+... -+..++..+..++... |+.++|.+.+++..+
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 5543 2334566666666666666666666666655421 1345555555566666 666666666666553
No 115
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.56 E-value=2.9e-06 Score=85.78 Aligned_cols=161 Identities=15% Similarity=0.017 Sum_probs=122.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----C----hH
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD-----LVLNNKVIEMYGKCGSMTDARRVFDHMADR-----S----MD 344 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-----~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-----~----~~ 344 (623)
.+...+..+...|++++|++.+.+.++...... ...+..+...|...|++++|+..|++..+. + ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 455667788899999999999998887532211 133445667778889999999999987531 1 33
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc---CCCC-Cc
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKL-GLQPN-----EQTFLAVFSACGSADAIEEAFIHFESMKSEF---GISP-GT 414 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~-g~~Pd-----~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~---g~~p-~~ 414 (623)
+|+.+...|...|++++|+..|++..+. ...++ ..+|..+..+|...|++++|+..+++...-. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8999999999999999999999998732 01122 2588899999999999999999999877431 1111 14
Q ss_pred cchhhHHHHHHhcCCHHHH-HHHHHh
Q 044791 415 EHYLGLVGVLGKCGHLFEA-QQFIEQ 439 (623)
Q Consensus 415 ~ty~~Li~~~~k~g~~e~A-~~lf~~ 439 (623)
.+|..+..+|.+.|+.++| ...|++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~ 262 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5678888999999999999 777887
No 116
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.55 E-value=4.3e-07 Score=82.62 Aligned_cols=136 Identities=13% Similarity=0.072 Sum_probs=86.6
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 044791 254 ARLCQEGKVKEAIELMDKGVKADA---SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTD 330 (623)
Q Consensus 254 ~~~~~~g~~~~A~~l~~~~~~pd~---~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~ 330 (623)
..+...|++++|++.+++.+..+. ..+-.|..+|.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~ 83 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDK 83 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHH
Confidence 334556777777777766444332 235566777777777777777777777753 2256777777777777777777
Q ss_pred HHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHH-HHHHHHcCCCC-CHHHHHHHHHHHHhcC
Q 044791 331 ARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQL-FEQMRKLGLQP-NEQTFLAVFSACGSAD 392 (623)
Q Consensus 331 A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l-~~eM~~~g~~P-d~~ty~~li~a~~~~g 392 (623)
|+..|++..+ .+..+|..+...|.+.|++++|.+. +++..+. .| +..+|......+...|
T Consensus 84 A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 84 AVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 7777777654 2345777777777777777665554 4666654 34 3455555555554444
No 117
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.54 E-value=7.6e-07 Score=99.08 Aligned_cols=159 Identities=11% Similarity=-0.079 Sum_probs=117.5
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHH
Q 044791 290 PKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLF 366 (623)
Q Consensus 290 ~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~ 366 (623)
.|++++|++.|+++++.. .-+...|..+...|.+.|++++|++.|++..+. +...|..+..+|...|++++|+..|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478999999999998753 336889999999999999999999999998764 4568999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhc---CCHHHHHHHHHhhCC
Q 044791 367 EQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKC---GHLFEAQQFIEQKLP 442 (623)
Q Consensus 367 ~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~---g~~e~A~~lf~~~m~ 442 (623)
++..+... -+...+..+..+|.+.|++++|.+.|++..+. .| +...+..+..+|... |+.++|.+.|++++.
T Consensus 81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99998632 25788999999999999999999999998854 34 466788899999999 999999999999666
Q ss_pred CCCCH-HHHHHH
Q 044791 443 FEPTA-EFWEAL 453 (623)
Q Consensus 443 ~~Pd~-~ty~~L 453 (623)
..|+. ..|..|
T Consensus 157 ~~p~~~~~~~~l 168 (568)
T 2vsy_A 157 QGVGAVEPFAFL 168 (568)
T ss_dssp HTCCCSCHHHHT
T ss_pred cCCcccChHHHh
Confidence 55543 344333
No 118
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.54 E-value=8.8e-07 Score=83.26 Aligned_cols=151 Identities=11% Similarity=-0.017 Sum_probs=115.5
Q ss_pred HHHcCCHHHHHH---HHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCC
Q 044791 256 LCQEGKVKEAIE---LMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQS----TIR-GDLVLNNKVIEMYGKCGS 327 (623)
Q Consensus 256 ~~~~g~~~~A~~---l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~-pd~~~y~~Li~~y~k~g~ 327 (623)
+...|++++|.+ ++.........++..+..++...|++++|++.+++.++. |.. ....++..+...|...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 346799999999 665533345678999999999999999999999998763 221 135778889999999999
Q ss_pred HHHHHHHHHHhhcC------Ch----HHHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHhcC
Q 044791 328 MTDARRVFDHMADR------SM----DSWHLMINGYADNGLGDEGLQLFEQMRKLG---LQPN--EQTFLAVFSACGSAD 392 (623)
Q Consensus 328 ~~~A~~lf~~m~~~------~~----~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g---~~Pd--~~ty~~li~a~~~~g 392 (623)
+++|++.|++..+. +. ..+..+...+...|++++|+..|++..+.. -.+. ..++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999987542 32 268889999999999999999999987431 1111 235678888899999
Q ss_pred CHHHHHHHHHHHHh
Q 044791 393 AIEEAFIHFESMKS 406 (623)
Q Consensus 393 ~~e~A~~l~~~m~~ 406 (623)
++++|.+.+++...
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987764
No 119
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.47 E-value=5.2e-06 Score=94.27 Aligned_cols=212 Identities=12% Similarity=0.064 Sum_probs=162.2
Q ss_pred HHHHHHcC---CCCCHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 044791 265 AIELMDKG---VKADASCFYTLFELCGNPKWYENAK-KVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD 340 (623)
Q Consensus 265 A~~l~~~~---~~pd~~ty~~Ll~~~~~~g~~~~A~-~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~ 340 (623)
+..+|++. +.-+...|-..+.-+...|+.++|. ++|++.+.. ++.+...|-.++...-+.|++++|.++|+.+.+
T Consensus 328 v~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34455542 2335667777777777788888997 999999875 455777788889999999999999999998864
Q ss_pred C-------------C------------hHHHHHHHHHHHHcCChHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhcCC
Q 044791 341 R-------------S------------MDSWHLMINGYADNGLGDEGLQLFEQMRKL-G-LQPNEQTFLAVFSACGSADA 393 (623)
Q Consensus 341 ~-------------~------------~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~-g-~~Pd~~ty~~li~a~~~~g~ 393 (623)
. + ...|-..+....+.|..+.|..+|.+..+. + ..+......+.|... ..++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-ISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hCCC
Confidence 2 1 126888888888999999999999999876 2 233334333333322 2356
Q ss_pred HHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC----CHHHHHHHHHHHHHcCChhHHHHH
Q 044791 394 IEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP----TAEFWEALRNYARIHGDIDLEDHA 469 (623)
Q Consensus 394 ~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P----d~~ty~~Li~a~~~~g~~~~A~~~ 469 (623)
.+.|..+|+...+.+.- +...+...++.....|+.+.|..+|++++...| ....|...+..-...|+.+.+..+
T Consensus 486 ~e~Ar~ife~~Lk~~p~--~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 486 TKTACKVLELGLKYFAT--DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999976432 445567788888889999999999999777555 346899999988999999999999
Q ss_pred HHHHHhcCCCC
Q 044791 470 EELMVDLDPSK 480 (623)
Q Consensus 470 ~~~~~~m~~~~ 480 (623)
.+++.+..|+.
T Consensus 564 ~~R~~~~~P~~ 574 (679)
T 4e6h_A 564 EKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHSTTC
T ss_pred HHHHHHhCCCC
Confidence 99999987664
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.46 E-value=1.4e-05 Score=81.89 Aligned_cols=223 Identities=10% Similarity=0.074 Sum_probs=166.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHhhcCC---hHHHHHHHHHH----HHc
Q 044791 286 LCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG--SMTDARRVFDHMADRS---MDSWHLMINGY----ADN 356 (623)
Q Consensus 286 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g--~~~~A~~lf~~m~~~~---~~tyn~Li~~~----~~~ 356 (623)
...+....++|+++++.++.... -+..+|+.--.++...| ++++++++++.+...+ ..+|+.-...+ ...
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc
Confidence 33444555799999999999642 25788899888898888 9999999999988643 44777766666 556
Q ss_pred ---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCC--
Q 044791 357 ---GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIE--EAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGH-- 429 (623)
Q Consensus 357 ---g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e--~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~-- 429 (623)
+++++++.+++++.+...+ +..+|+.-.-++.+.|+++ +++++++.+.+. .. -|...|+.-..++.+.|+
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d~-~N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-DL-KNNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-CT-TCHHHHHHHHHHHHSSGGGC
T ss_pred cccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-CC-CCHHHHHHHHHHHHhccccc
Confidence 7899999999999987433 7778888777888888888 999999999964 22 266677766666777776
Q ss_pred ----HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhH-HHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhc
Q 044791 430 ----LFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDL-EDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGK 503 (623)
Q Consensus 430 ----~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~-A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~ 503 (623)
++++++++++++...| |...|+.+-..+.+.|+... +.+..+.+.+++...+ ........+.+.+
T Consensus 198 ~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~---------~s~~al~~la~~~ 268 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQV---------TSSFALETLAKIY 268 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEE---------SCHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCC---------CCHHHHHHHHHHH
Confidence 8999999998676566 77899999888888888443 4456665555431111 3355666777777
Q ss_pred CccccccCCcccchHHHHHHHHHHHH
Q 044791 504 SRLVEFRNPTLYRDDEKLKALNQMKE 529 (623)
Q Consensus 504 ~~~~~~~~~~~~~~~eal~~~~~M~~ 529 (623)
.+.|+. ++|+++++.+.+
T Consensus 269 ~~~~~~--------~~A~~~~~~l~~ 286 (306)
T 3dra_A 269 TQQKKY--------NESRTVYDLLKS 286 (306)
T ss_dssp HHTTCH--------HHHHHHHHHHHH
T ss_pred HccCCH--------HHHHHHHHHHHh
Confidence 777766 699999988764
No 121
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.44 E-value=1.1e-05 Score=77.66 Aligned_cols=149 Identities=12% Similarity=0.023 Sum_probs=72.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCC-CHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKA-DASCFYTLFELCGNPK----WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK- 324 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~p-d~~ty~~Ll~~~~~~g----~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k- 324 (623)
.|...|...+++++|++.|++.... +...+..|...|.. + ++++|+++|++..+.| +...+..|..+|..
T Consensus 23 ~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g 98 (212)
T 3rjv_A 23 YLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNR 98 (212)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCG
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 4444455555555555555432221 33444445555544 3 5555555555555443 34455555555544
Q ss_pred ---cCCHHHHHHHHHHhhcCCh-----HHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-
Q 044791 325 ---CGSMTDARRVFDHMADRSM-----DSWHLMINGYAD----NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA- 391 (623)
Q Consensus 325 ---~g~~~~A~~lf~~m~~~~~-----~tyn~Li~~~~~----~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~- 391 (623)
.+++++|++.|++..+.+. .++..|...|.. .+++++|+..|++..+.+ .+...+..|...|...
T Consensus 99 ~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~ 176 (212)
T 3rjv_A 99 QAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGE 176 (212)
T ss_dssp GGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCB
T ss_pred CCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCC
Confidence 4555555555555544332 355555555555 445555555555555431 1222333444444321
Q ss_pred C-----CHHHHHHHHHHHH
Q 044791 392 D-----AIEEAFIHFESMK 405 (623)
Q Consensus 392 g-----~~e~A~~l~~~m~ 405 (623)
| +.++|+..|+...
T Consensus 177 gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 177 KGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp TTTBCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH
Confidence 1 4555555555444
No 122
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.42 E-value=4e-05 Score=79.65 Aligned_cols=212 Identities=12% Similarity=0.078 Sum_probs=156.9
Q ss_pred cCCHHHHHHHHHc--CCCCCH-HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-CHHHHH
Q 044791 259 EGKVKEAIELMDK--GVKADA-SCFYTLFELCGNPK-WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKC-G-SMTDAR 332 (623)
Q Consensus 259 ~g~~~~A~~l~~~--~~~pd~-~ty~~Ll~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~-g-~~~~A~ 332 (623)
.+..++|++++++ .+.|+. .+|+.--.++...| .+++++++++.++.... -+..+|+.-..++.+. + +.++++
T Consensus 67 ~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 67 EEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3445678888876 344543 45777777777777 59999999999998753 3788898888888877 7 899999
Q ss_pred HHHHHhhcCC---hHHHHHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-------H
Q 044791 333 RVFDHMADRS---MDSWHLMINGYADNGLGD--------EGLQLFEQMRKLGLQPNEQTFLAVFSACGSADA-------I 394 (623)
Q Consensus 333 ~lf~~m~~~~---~~tyn~Li~~~~~~g~~e--------eA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~-------~ 394 (623)
++++.+.+.+ ..+|+.-...+.+.|.++ ++++.+++|.+..+. |..+|+.....+.+.++ +
T Consensus 146 ~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 146 EYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHH
Confidence 9999998754 457877777777777777 999999999987544 77888888888888776 7
Q ss_pred HHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCH--------------------HHHHHHHHhhCCC-------CCC
Q 044791 395 EEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHL--------------------FEAQQFIEQKLPF-------EPT 446 (623)
Q Consensus 395 e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~--------------------e~A~~lf~~~m~~-------~Pd 446 (623)
+++++.+++++. +.| |...|+-+-..+.+.|+. .+..++..+.... .+.
T Consensus 225 ~eELe~~~~aI~---~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 225 QDELIYILKSIH---LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 899999988884 345 566777777777766653 3444444442221 256
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 447 AEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 447 ~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
...+..|++.|...|+.++|.++++.+.+
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 78889999999999999999999998863
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.41 E-value=9.5e-06 Score=73.24 Aligned_cols=126 Identities=13% Similarity=0.028 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYA 354 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~ 354 (623)
..+..+...+...|++++|...|++.++.. ..+..++..+..+|...|++++|+..|++..+ .+...|..+..++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 346667777777788888888887777753 23567777777777778888888887776654 24456777777777
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 044791 355 DNGLGDEGLQLFEQMRKLGLQPNEQTFL--AVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~g~~Pd~~ty~--~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
..|++++|+..|+++.+.... +...+. .++..+...|++++|++.+....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 788888888888777765321 333332 33333566677777777776554
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.40 E-value=4.7e-06 Score=75.31 Aligned_cols=91 Identities=9% Similarity=0.016 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS 390 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~ 390 (623)
.+..+...+...|++++|+..|++..+ .+..+|..+...+...|++++|+..|++..+.. ..+..+|..+..++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 344444455555555555555554432 123344445555555555555555555544432 1133444444444444
Q ss_pred cCCHHHHHHHHHHHH
Q 044791 391 ADAIEEAFIHFESMK 405 (623)
Q Consensus 391 ~g~~e~A~~l~~~m~ 405 (623)
.|++++|...|+++.
T Consensus 94 ~~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 94 LGKFRAALRDYETVV 108 (166)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHH
Confidence 555555555554444
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.36 E-value=1.5e-05 Score=67.70 Aligned_cols=94 Identities=17% Similarity=0.241 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYA 354 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~ 354 (623)
.+|..+...+...|++++|+++++++++.. ..+..++..+..+|.+.|++++|+.+|+++.+ .+..+|..+...|.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 345555555566666666666666655542 22455555555556666666666666555543 23345555555555
Q ss_pred HcCChHHHHHHHHHHHHc
Q 044791 355 DNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~ 372 (623)
..|++++|..+|+++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 555555555555555543
No 126
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.35 E-value=4.1e-06 Score=77.43 Aligned_cols=115 Identities=6% Similarity=0.009 Sum_probs=61.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHH-HHHcCCh--HHH
Q 044791 289 NPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMING-YADNGLG--DEG 362 (623)
Q Consensus 289 ~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~-~~~~g~~--eeA 362 (623)
..|++++|++.+++.++.. +.+..+|..+..+|...|++++|+..|++..+ .+...|..+..+ +...|++ ++|
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3455555666665555542 22455556666666666666666666665543 234455555555 5556665 666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 363 LQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 363 ~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
+.+|+++.+... -+...+..+..++...|++++|...|+.+.
T Consensus 101 ~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al 142 (177)
T 2e2e_A 101 RAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVM 142 (177)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 666666665421 134555555566666666666666666655
No 127
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.35 E-value=2.7e-06 Score=74.89 Aligned_cols=92 Identities=10% Similarity=-0.026 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG 389 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~ 389 (623)
..+..+...|.+.|++++|++.|++..+ .+...|..+..+|.+.|++++|+..|++.++... -+...|..+..++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHH
Confidence 3444455555555555555555554432 2333455555555555555555555555544321 13344444555555
Q ss_pred hcCCHHHHHHHHHHHH
Q 044791 390 SADAIEEAFIHFESMK 405 (623)
Q Consensus 390 ~~g~~e~A~~l~~~m~ 405 (623)
..|++++|++.|+...
T Consensus 93 ~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 93 AMREWSKAQRAYEDAL 108 (126)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 5555555555555444
No 128
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.33 E-value=3e-06 Score=85.59 Aligned_cols=193 Identities=10% Similarity=-0.062 Sum_probs=129.4
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMING 352 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~ 352 (623)
+...+..+...+.+.|++++|++.|++.++.. +-+...|..+..+|.+.|++++|+..|++..+. +...|..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45678888899999999999999999998863 237889999999999999999999999998763 45689999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHH
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQPNE-QTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLF 431 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~Pd~-~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e 431 (623)
|...|++++|+..|++..+.. |+. ..+..++....+ ..++.. +...... ....+......+ ..+ ..|+.+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~-~~~~~~~i~~~l-~~l-~~~~~~ 152 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIEER-RIHQESELHSYL-TRL-IAAERE 152 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHHHT-CCCCCCHHHHHH-HHH-HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHHHH-HHhhhHHHHHHH-HHH-HHHHHH
Confidence 999999999999999988642 110 011111111111 111111 1222222 333344433333 333 369999
Q ss_pred HHHHHHHhhCCCCCCHHHH-HHHHHHHHHc-CChhHHHHHHHHHHhcCC
Q 044791 432 EAQQFIEQKLPFEPTAEFW-EALRNYARIH-GDIDLEDHAEELMVDLDP 478 (623)
Q Consensus 432 ~A~~lf~~~m~~~Pd~~ty-~~Li~a~~~~-g~~~~A~~~~~~~~~m~~ 478 (623)
+|++.++++++..|+.... ..+...+... +.+++|.++++...+...
T Consensus 153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~ 201 (281)
T 2c2l_A 153 RELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRK 201 (281)
T ss_dssp HHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTS
T ss_pred HHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 9999999977778876433 3333334444 557767777776655433
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.30 E-value=8.5e-06 Score=69.24 Aligned_cols=93 Identities=16% Similarity=0.241 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044791 312 LVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSAC 388 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~ 388 (623)
..++..+...|.+.|++++|+++|+++.+ .+..+|..+...+.+.|++++|+.+|+++.+.. ..+..++..+..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 34555666666666666666666665543 234455666666666666666666666665542 12445555555566
Q ss_pred HhcCCHHHHHHHHHHHH
Q 044791 389 GSADAIEEAFIHFESMK 405 (623)
Q Consensus 389 ~~~g~~e~A~~l~~~m~ 405 (623)
...|++++|...|+++.
T Consensus 88 ~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHH
Confidence 66666666666666555
No 130
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.28 E-value=3e-05 Score=80.13 Aligned_cols=222 Identities=10% Similarity=0.053 Sum_probs=159.8
Q ss_pred HHHHHHHcCCHH-HHHHHHHc--CCCCCHH-HHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCCCCHHHHHH
Q 044791 252 DLARLCQEGKVK-EAIELMDK--GVKADAS-CFYTLFELCGNPKW----------YENAKKVHDYFLQSTIRGDLVLNNK 317 (623)
Q Consensus 252 li~~~~~~g~~~-~A~~l~~~--~~~pd~~-ty~~Ll~~~~~~g~----------~~~A~~l~~~m~~~g~~pd~~~y~~ 317 (623)
.+....+.|.++ +|++++++ .+.|+.. +|+.--.++...+. +++++.+++.++... +-+..+|+.
T Consensus 35 ~~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~h 113 (331)
T 3dss_A 35 AVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 113 (331)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 344555677776 78999986 4556543 45544333333332 688999999998864 348899998
Q ss_pred HHHHHHHcC--CHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044791 318 VIEMYGKCG--SMTDARRVFDHMADR---SMDSWHLMINGYADNGL-GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA 391 (623)
Q Consensus 318 Li~~y~k~g--~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~-~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~ 391 (623)
-.-++.+.| .+++++.+++.+.+. |..+|+.-...+...|. ++++++.++++.+..+. |..+|+.....+.+.
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 192 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHh
Confidence 888888888 499999999999864 55688888888889998 59999999999987644 677777766665554
Q ss_pred --------------CCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhc-----------CCHHHHHHHHHhhCCCCC
Q 044791 392 --------------DAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKC-----------GHLFEAQQFIEQKLPFEP 445 (623)
Q Consensus 392 --------------g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~-----------g~~e~A~~lf~~~m~~~P 445 (623)
+.++++++.+...+. +.| |...|+-+-..+.+. +.++++++.++++++..|
T Consensus 193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~---~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 193 HPQPDSGPQGRLPENVLLKELELVQNAFF---TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp SCCC------CCCHHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hhccccccccccchHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 458899999988884 345 566676665556555 468899999999677788
Q ss_pred CHHHHHHHHHH-----HHHcCChhHHHHHHHHHHhcCCC
Q 044791 446 TAEFWEALRNY-----ARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 446 d~~ty~~Li~a-----~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
|. .|..+-.+ ....|..+++...+..+.+++|.
T Consensus 270 d~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 270 EN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp TC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred cc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 75 34332222 22356677778888888888765
No 131
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.28 E-value=1.6e-06 Score=79.40 Aligned_cols=99 Identities=7% Similarity=0.016 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGV 423 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~ 423 (623)
.|..+...+.+.|++++|+..|++.++... -+...|..+..+|...|++++|+..|++..+ +.| +...|..+..+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~---l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFA---LGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHh---hCCCCcHHHHHHHHH
Confidence 566666666667777777777776666421 1455666666666667777777777766663 233 35556666666
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCCH
Q 044791 424 LGKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 424 ~~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
|.+.|++++|++.|++++...|+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCH
Confidence 777777777777776655444544
No 132
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.28 E-value=4.6e-05 Score=80.65 Aligned_cols=265 Identities=9% Similarity=-0.039 Sum_probs=164.1
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHHcC-----CCCCH--
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMDKG-----VKADA-- 277 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~~-----~~pd~-- 277 (623)
.+|+|++|++.|..+.+.. +......................+..|...|...|++++|++++... ...+.
T Consensus 16 ~~~~y~eA~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 93 (434)
T 4b4t_Q 16 NEKQYNEAEQVYLSLLDKD--SSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT 93 (434)
T ss_dssp HHTCHHHHHHHHHHHHHSC--CCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH
T ss_pred HCCCHHHHHHHHHHHHhhC--cccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH
Confidence 6899999999999884411 11111110000000000001123567889999999999999998642 11222
Q ss_pred --HHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhc--------C-
Q 044791 278 --SCFYTLFELCGNPKWYENAKKVHDYFLQS----TIRGD-LVLNNKVIEMYGKCGSMTDARRVFDHMAD--------R- 341 (623)
Q Consensus 278 --~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~~y~~Li~~y~k~g~~~~A~~lf~~m~~--------~- 341 (623)
.+.+.+...+...|+.++|.+++.+.... +..+. ..++..|...|...|++++|..+++++.. +
T Consensus 94 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 94 VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 23444445556678999999999887642 33333 57888999999999999999999997753 1
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCC-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCcc
Q 044791 342 SMDSWHLMINGYADNGLGDEGLQLFEQMRKL--GLQ-P-N--EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTE 415 (623)
Q Consensus 342 ~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~--g~~-P-d--~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ 415 (623)
.+..|..++..|...|++++|..++++.+.. .+. | . ...+..+...+...|++++|...|.+..+.+....+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~~~~~~ 253 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHNLTTHN 253 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhh
Confidence 1338999999999999999999999988742 121 2 1 35667777788899999999998887765322111111
Q ss_pred ----chh---hHHHHHHhcCCHHHHHHHHHh--hCC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 044791 416 ----HYL---GLVGVLGKCGHLFEAQQFIEQ--KLP--FEPTAEFWEALRNYARIHGDIDLEDHAEEL 472 (623)
Q Consensus 416 ----ty~---~Li~~~~k~g~~e~A~~lf~~--~m~--~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~ 472 (623)
... .++-+....+..+.....+.. ... ..++...+..++.++. .+++.....+.+.
T Consensus 254 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~l~~~~~~~~~ 320 (434)
T 4b4t_Q 254 SYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYN-NRSLLDFNTALKQ 320 (434)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHH-hhhHHHHHHHHHH
Confidence 011 111122223444555555554 111 2234567777777775 4555544444443
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.27 E-value=1.6e-05 Score=68.07 Aligned_cols=113 Identities=12% Similarity=-0.028 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYA 354 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~ 354 (623)
..+..+...+...|++++|+++++++++.. ..+..++..+..+|...|++++|+..|++..+ .+...|..+...|.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 345555555555666666666666655542 22455555555556666666666666555443 22335555555555
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044791 355 DNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD 392 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g 392 (623)
..|++++|+..|++..+... -+...+..+..++...|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHh
Confidence 55666666665555554421 13344444444444443
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.26 E-value=1.1e-06 Score=88.72 Aligned_cols=126 Identities=10% Similarity=-0.047 Sum_probs=92.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC-----hHHHHHHHHHHH
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRS-----MDSWHLMINGYA 354 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~-----~~tyn~Li~~~~ 354 (623)
+-.+..++...|++++|.++|+.+...+ |+....-.+...+.+.+++++|+..|+...... ...+..|..++.
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH
Confidence 3345667778888999999988876643 444366667778888899999999888665532 236777888888
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 355 DNGLGDEGLQLFEQMRKLGLQPN--EQTFLAVFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~g~~Pd--~~ty~~li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
..|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 88888888888888875433354 235566677788888888888888888754
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.25 E-value=4.6e-06 Score=76.22 Aligned_cols=99 Identities=10% Similarity=-0.008 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHH
Q 044791 378 EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRN 455 (623)
Q Consensus 378 ~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~ 455 (623)
...+..+...+.+.|++++|+..|+.... +.| +...|..|..+|...|++++|++.|++++.+.| +...|..+..
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI---YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 45777888899999999999999999984 355 577888999999999999999999999777677 4588999999
Q ss_pred HHHHcCChhHHHHHHHHHHhcCCC
Q 044791 456 YARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 456 a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
+|...|++++|...++...++.++
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999999999999999999998754
No 136
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.25 E-value=2.1e-05 Score=69.12 Aligned_cols=104 Identities=10% Similarity=-0.027 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYA 354 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~ 354 (623)
..+..+...+.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|+..|++..+ .+...|..+..+|.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 467788999999999999999999998864 34789999999999999999999999998765 34568999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 044791 355 DNGLGDEGLQLFEQMRKLGLQPN-EQTFLAV 384 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~g~~Pd-~~ty~~l 384 (623)
..|++++|+..|++.++. .|+ ...+..|
T Consensus 93 ~~~~~~~A~~~~~~al~l--~P~~~~a~~~l 121 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV--DPSNEEAREGV 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH--CcCCHHHHHHH
Confidence 999999999999999885 454 3344333
No 137
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.25 E-value=1.1e-05 Score=69.19 Aligned_cols=114 Identities=13% Similarity=0.091 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGV 423 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~ 423 (623)
.|..+...+...|++++|+..|++..+.. ..+...+..+..++...|++++|++.++..... .| +...+..+..+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI---DPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc---CccCHHHHHHHHHH
Confidence 44445555555555555555555555432 113444555555555555555555555555532 12 23444555555
Q ss_pred HHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCC
Q 044791 424 LGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGD 462 (623)
Q Consensus 424 ~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~ 462 (623)
|.+.|++++|..+|++++...| +...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 5555555555555555433333 33444444445544444
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.24 E-value=1.6e-05 Score=82.42 Aligned_cols=147 Identities=8% Similarity=-0.109 Sum_probs=104.7
Q ss_pred cCCHHHHHHHHHcCC--CC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHH
Q 044791 259 EGKVKEAIELMDKGV--KA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD--------------LVLNNKVIEM 321 (623)
Q Consensus 259 ~g~~~~A~~l~~~~~--~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd--------------~~~y~~Li~~ 321 (623)
.+++++|++.|+..+ .| +...|..+...+.+.|++++|+..|++.++...... ..+|..+..+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 345566666665433 23 345788888999999999999999999988642211 4777888888
Q ss_pred HHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-
Q 044791 322 YGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEA- 397 (623)
Q Consensus 322 y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A- 397 (623)
|.+.|++++|+..|++..+ .+...|..+..+|...|++++|+..|++.++... -+..++..+..++...|+.++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888887764 3455777888888888888888888888777532 2456677777777777777777
Q ss_pred HHHHHHHHh
Q 044791 398 FIHFESMKS 406 (623)
Q Consensus 398 ~~l~~~m~~ 406 (623)
..+|..|..
T Consensus 285 ~~~~~~~~~ 293 (336)
T 1p5q_A 285 KKLYANMFE 293 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555553
No 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.21 E-value=1.6e-05 Score=80.17 Aligned_cols=186 Identities=8% Similarity=-0.097 Sum_probs=113.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHhhcC------------C-------
Q 044791 289 NPKWYENAKKVHDYFLQSTIRGDLVLNNKV-------IEMYGKCGSMTDARRVFDHMADR------------S------- 342 (623)
Q Consensus 289 ~~g~~~~A~~l~~~m~~~g~~pd~~~y~~L-------i~~y~k~g~~~~A~~lf~~m~~~------------~------- 342 (623)
..++...|.+.|.++.... +-....|..+ ..++.+.++..+++..+..-.+. +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777777777777753 2245666666 45555555555555555544331 1
Q ss_pred -----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC--cc
Q 044791 343 -----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG--TE 415 (623)
Q Consensus 343 -----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~--~~ 415 (623)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... . .+. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHH
Confidence 0133445566777778888888777776543 44434445555677778888888877644321 0 111 23
Q ss_pred chhhHHHHHHhcCCHHHHHHHHHhhCC--CCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 416 HYLGLVGVLGKCGHLFEAQQFIEQKLP--FEPT--AEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 416 ty~~Li~~~~k~g~~e~A~~lf~~~m~--~~Pd--~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
.+..|..++...|++++|++.|+++.. ..|. ...+..+..++...|+.++|..+++.+....|.
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 556667777778888888888877432 1143 234555666777778888888877777776544
No 140
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.21 E-value=2e-05 Score=68.10 Aligned_cols=57 Identities=16% Similarity=0.011 Sum_probs=21.7
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDH 337 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~ 337 (623)
|..+...+...|++++|+++|++.++.. ..+..++..+..+|...|++++|++.|++
T Consensus 19 ~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 75 (133)
T 2lni_A 19 VKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEE 75 (133)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 3333334444444444444444433321 11233333333334344444444444433
No 141
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.19 E-value=7.2e-06 Score=72.14 Aligned_cols=102 Identities=10% Similarity=-0.063 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CCCC----ccchhh
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFG-ISPG----TEHYLG 419 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g-~~p~----~~ty~~ 419 (623)
+|..|...+.+.|++++|+..|++.++... -+..+|..+..+|.+.|++++|++.|+..++-.. ...+ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 344455555555555555555555554321 1344455555555555555555555554442100 0000 123444
Q ss_pred HHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 044791 420 LVGVLGKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 420 Li~~~~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
+..+|...|++++|++.|++++...||.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~~~~~ 116 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSEFRDP 116 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence 4555555566666666665544434443
No 142
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.17 E-value=0.00012 Score=75.99 Aligned_cols=232 Identities=11% Similarity=0.077 Sum_probs=157.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhhcC---ChHHHHHHHHHHHHc-
Q 044791 282 TLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG-SMTDARRVFDHMADR---SMDSWHLMINGYADN- 356 (623)
Q Consensus 282 ~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g-~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~- 356 (623)
.+.....+.+..++|++++++++.... -+..+|+.--.++...| .+++++++++.+... +..+|+.-...+.+.
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~ 137 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRIS 137 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 333344455566789999999999653 36788898888888888 599999999999864 445888888888877
Q ss_pred C-ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHhhcCCCCCccchhhHHHHHHhc
Q 044791 357 G-LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIE--------EAFIHFESMKSEFGISPGTEHYLGLVGVLGKC 427 (623)
Q Consensus 357 g-~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e--------~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~ 427 (623)
+ ++++++++++++.+...+ +..+|+.-.-++.+.|.++ ++++.++++++. . .-|...|+.....+.+.
T Consensus 138 ~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~-d-p~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 138 PQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV-D-GRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp CSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHTTS
T ss_pred CCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhc
Confidence 7 899999999999976433 6667766555555555555 899999999864 2 22677788888788887
Q ss_pred CC-------HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhH-----------------HHHHHHHHHhcCCCCCC
Q 044791 428 GH-------LFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDL-----------------EDHAEELMVDLDPSKAD 482 (623)
Q Consensus 428 g~-------~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~-----------------A~~~~~~~~~m~~~~~~ 482 (623)
++ ++++++++++++...| |...|+.+-..+...|+... ...+.+...++......
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP 294 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred cccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence 76 7899999988776666 77889888877777776410 12344444444332100
Q ss_pred CCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHH
Q 044791 483 PKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMK 528 (623)
Q Consensus 483 ~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~ 528 (623)
.............+.+.+...++. ++|+++++.+.
T Consensus 295 ---~~~~~~s~~al~~l~d~~~~~~~~--------~~a~~~~~~l~ 329 (349)
T 3q7a_A 295 ---EDTPLPVPLALEYLADSFIEQNRV--------DDAAKVFEKLS 329 (349)
T ss_dssp ---SSCCSCCHHHHHHHHHHHHHTTCH--------HHHHHHHHHHH
T ss_pred ---cccCCCcHHHHHHHHHHHHhcCCH--------HHHHHHHHHHH
Confidence 001123445555666677666654 57888887764
No 143
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.17 E-value=4.4e-06 Score=75.69 Aligned_cols=92 Identities=10% Similarity=-0.037 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG 389 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~ 389 (623)
..+..+...+.+.|++++|+..|++... .+...|..+..+|...|++++|+..|++.++... -+...+..+..+|.
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence 3444445555555555555555554432 2333444555555555555555555555544321 12344444444555
Q ss_pred hcCCHHHHHHHHHHHH
Q 044791 390 SADAIEEAFIHFESMK 405 (623)
Q Consensus 390 ~~g~~e~A~~l~~~m~ 405 (623)
..|++++|+..|+...
T Consensus 101 ~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQ 116 (148)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 5555555555555444
No 144
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.16 E-value=3.7e-05 Score=67.48 Aligned_cols=94 Identities=11% Similarity=0.043 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC----------hHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRS----------MDSWH 347 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~----------~~tyn 347 (623)
.++..|...+.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|++.|++..+.+ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 356677777777888888888887777753 2356777777778888888888887777665421 12566
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 348 LMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
.+..++...|++++|++.|++.++.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6677777777777777777776654
No 145
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.15 E-value=1.2e-05 Score=83.33 Aligned_cols=119 Identities=12% Similarity=0.023 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--C-C---------------hHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMAD--R-S---------------MDSWHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~--~-~---------------~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
+...|..+...|.+.|++++|+..|++..+ + + ..+|..+..+|.+.|++++|+..|++.++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666777777777777777777776543 1 1 245555555666666666666666665554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHH
Q 044791 373 GLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEA 433 (623)
Q Consensus 373 g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A 433 (623)
.. -+..+|..+..+|...|++++|+..|++..+. .| +...+..|..++.+.|+.++|
T Consensus 226 ~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 21 14455555555555555555555555555522 23 233444455555555555555
No 146
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.15 E-value=1.1e-05 Score=73.06 Aligned_cols=94 Identities=14% Similarity=-0.072 Sum_probs=60.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYA 354 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~ 354 (623)
..+..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|++... .+...|..+..+|.
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 345556666667777777777777666643 22566666677777777777777777766653 24446666667777
Q ss_pred HcCChHHHHHHHHHHHHc
Q 044791 355 DNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~ 372 (623)
..|++++|+..|++.++.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777766653
No 147
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.14 E-value=2e-05 Score=70.01 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~ 370 (623)
++..+...+...|++++|+..|++..
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 148
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.14 E-value=5.9e-05 Score=65.01 Aligned_cols=113 Identities=11% Similarity=-0.033 Sum_probs=91.3
Q ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHc--CCCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044791 244 QVLPPSVADLARLCQEGKVKEAIELMDK--GVKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIE 320 (623)
Q Consensus 244 ~~~~~~~~li~~~~~~g~~~~A~~l~~~--~~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~ 320 (623)
.....+..+...+.+.|++++|+++|++ ...| +..++..+..++...|++++|+++++++++.. ..+..++..+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3455667888899999999999999986 3334 56789999999999999999999999999864 336888999999
Q ss_pred HHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcC
Q 044791 321 MYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNG 357 (623)
Q Consensus 321 ~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g 357 (623)
+|.+.|++++|++.|++..+. +...+..+..++.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 999999999999999987653 3346666666666554
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.14 E-value=2.5e-06 Score=80.79 Aligned_cols=145 Identities=9% Similarity=0.012 Sum_probs=82.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---------------H
Q 044791 317 KVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN---------------E 378 (623)
Q Consensus 317 ~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd---------------~ 378 (623)
..+.+....|++++|.++|+...+. ....|..+...+.+.|++++|+.+|++.++....-. .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3444445556666666655432221 223566666667777777777777777765321111 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHH
Q 044791 379 QTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNY 456 (623)
Q Consensus 379 ~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a 456 (623)
.+|..+..+|...|++++|+..++..... .| +...|..+..+|...|++++|++.|++++.+.| +...+..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKI---DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 56677777777778888888877777743 23 455667777777778888888888877555555 44556666666
Q ss_pred HHHcCChh
Q 044791 457 ARIHGDID 464 (623)
Q Consensus 457 ~~~~g~~~ 464 (623)
+...++.+
T Consensus 166 ~~~~~~~~ 173 (198)
T 2fbn_A 166 VNKLKEAR 173 (198)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555544
No 150
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.13 E-value=4.9e-06 Score=83.96 Aligned_cols=184 Identities=9% Similarity=-0.056 Sum_probs=125.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcCC--CC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKGV--KA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYG 323 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~~--~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~ 323 (623)
..+..+...+.+.|++++|+..|++.+ .| +...|..+..++.+.|++++|++.+++.++.. .-+...+..+..+|.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 345577788999999999999998633 45 67789999999999999999999999998863 336889999999999
Q ss_pred HcCCHHHHHHHHHHhhcCChH---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044791 324 KCGSMTDARRVFDHMADRSMD---SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIH 400 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~~~~~---tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l 400 (623)
+.|++++|+..|++..+.+.. .+..++....+. .++. .+....+.....+......+ ..+ ..|+.++|.+.
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~ 157 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKK-RWNSIEERRIHQESELHSYL-TRL-IAAERERELEE 157 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHH-HHHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHH-HHHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHH
Confidence 999999999999988653221 111222222211 1111 12223333344444443333 333 26889999998
Q ss_pred HHHHHhhcCCCCCc-cchhhHHHHHHhc-CCHHHHHHHHHhh
Q 044791 401 FESMKSEFGISPGT-EHYLGLVGVLGKC-GHLFEAQQFIEQK 440 (623)
Q Consensus 401 ~~~m~~~~g~~p~~-~ty~~Li~~~~k~-g~~e~A~~lf~~~ 440 (623)
++... ...|+. .....+...+.+. +.+++|.++|+++
T Consensus 158 ~~~al---~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 158 CQRNH---EGHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp TSGGG---TTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHhhh---ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88776 445643 3334444445554 7789999999983
No 151
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=1.6e-05 Score=84.33 Aligned_cols=189 Identities=11% Similarity=-0.015 Sum_probs=137.3
Q ss_pred HHHHHHHcCCHHHHHHHHHcCC--C------------CC------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCC
Q 044791 252 DLARLCQEGKVKEAIELMDKGV--K------------AD------ASCFYTLFELCGNPKWYENAKKVHDYFLQS-TIRG 310 (623)
Q Consensus 252 li~~~~~~g~~~~A~~l~~~~~--~------------pd------~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-g~~p 310 (623)
-...+.+.|++++|++.|.+.+ . .. ..++..|+..|.+.|++++|.+++.++.+. +-..
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 3456788999999999995310 0 01 134788999999999999999999987653 1122
Q ss_pred CH----HHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----C----hHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CC-
Q 044791 311 DL----VLNNKVIEMYGKCGSMTDARRVFDHMADR-----S----MDSWHLMINGYADNGLGDEGLQLFEQMRKL--GL- 374 (623)
Q Consensus 311 d~----~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-----~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~--g~- 374 (623)
+. .+.+.+...+...|+.++|+.++++.... + ..++..|...|...|++++|..++++.... +.
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 22 33444555555679999999999877531 1 237889999999999999999999998743 21
Q ss_pred -CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-----ccchhhHHHHHHhcCCHHHHHHHHHhh
Q 044791 375 -QP-NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-----TEHYLGLVGVLGKCGHLFEAQQFIEQK 440 (623)
Q Consensus 375 -~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-----~~ty~~Li~~~~k~g~~e~A~~lf~~~ 440 (623)
.+ ...+|..++..|...|++++|..+++.......-.++ ...+..+...+...|++++|...|.++
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 12 2457888999999999999999999887643211111 245666777778899999999888773
No 152
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.12 E-value=1.7e-05 Score=70.49 Aligned_cols=129 Identities=12% Similarity=0.013 Sum_probs=87.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-----C----h
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIR-GD----LVLNNKVIEMYGKCGSMTDARRVFDHMADR-----S----M 343 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~-pd----~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-----~----~ 343 (623)
.++..+...+...|++++|++.+++.++.... .+ ..++..+...|...|++++|++.|++..+. + .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35677777777888888888888777653110 11 246777888888888888888888876531 1 2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 344 DSWHLMINGYADNGLGDEGLQLFEQMRKL----GLQP-NEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 344 ~tyn~Li~~~~~~g~~eeA~~l~~eM~~~----g~~P-d~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
.++..+...+...|++++|+..|++..+. +..+ ...++..+...+...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 36777778888888888888888877643 1111 134566666777777777777777776653
No 153
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.11 E-value=0.00027 Score=72.89 Aligned_cols=188 Identities=12% Similarity=0.075 Sum_probs=139.4
Q ss_pred CCCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHhhc---CChHHHHHHHHHHH
Q 044791 289 NPKWY-ENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS----------MTDARRVFDHMAD---RSMDSWHLMINGYA 354 (623)
Q Consensus 289 ~~g~~-~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~----------~~~A~~lf~~m~~---~~~~tyn~Li~~~~ 354 (623)
+.|.+ ++|+++++.++.... -+..+|+.--.++...+. +++++.+++.+.. ++..+|+.-...+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 44555 489999999998542 245667665444444333 6889999998875 45568888888888
Q ss_pred HcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhc----
Q 044791 355 DNGL--GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADA-IEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKC---- 427 (623)
Q Consensus 355 ~~g~--~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~-~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~---- 427 (623)
+.|+ +++++.++++|.+...+ |..+|+.-.-++...|. ++++++.++.+++. .. -|...|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-~p-~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-NF-SNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CS-CCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-CC-CCHHHHHHHHHHHHHhhhcc
Confidence 8884 89999999999987543 77788877777788888 69999999999964 22 2566677666655554
Q ss_pred ----------CCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHc-----------CChhHHHHHHHHHHhcCCCC
Q 044791 428 ----------GHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIH-----------GDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 428 ----------g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~-----------g~~~~A~~~~~~~~~m~~~~ 480 (623)
+.++++++++++++...| |...|+.+-..+... +.++++.+.++.+.++.|++
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 568899999999776666 677887665555544 35788888999999998764
No 154
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.10 E-value=8.5e-06 Score=75.29 Aligned_cols=121 Identities=9% Similarity=0.048 Sum_probs=94.1
Q ss_pred HHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 044791 323 GKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA-CGSADAI--EE 396 (623)
Q Consensus 323 ~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a-~~~~g~~--e~ 396 (623)
...|++++|+..|++..+ .+...|..+...|...|++++|+..|++..+... -+...+..+..+ +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHH
Confidence 456888899999887654 3566899999999999999999999999987632 256777778777 7788998 99
Q ss_pred HHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH
Q 044791 397 AFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA 447 (623)
Q Consensus 397 A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~ 447 (623)
|..+|+.+.+. .| +...+..+..+|...|++++|+..|++++...|+.
T Consensus 100 A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 100 TRAMIDKALAL---DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHh---CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 99999998854 34 45677788889999999999999999966666654
No 155
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.10 E-value=9.3e-06 Score=76.75 Aligned_cols=145 Identities=9% Similarity=-0.122 Sum_probs=74.0
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCC---CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-CC--------------HHH
Q 044791 253 LARLCQEGKVKEAIELMDKGVKA---DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIR-GD--------------LVL 314 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~~~p---d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~-pd--------------~~~ 314 (623)
+.+....|.+++|.+.++....- ....+..+...+.+.|++++|+++|++.++.... ++ ..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (198)
T 2fbn_A 11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISC 90 (198)
T ss_dssp -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHH
Confidence 33445566677766666532211 2345777777888888888888888888774211 10 145
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044791 315 NNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA 391 (623)
Q Consensus 315 y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~ 391 (623)
|..+..+|.+.|++++|+..|++..+ .+...|..+..+|...|++++|+..|++..+... -+...+..+..++...
T Consensus 91 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 91 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHH
Confidence 55556666666666666666655543 2333555555556666666666666665554321 1334444444444444
Q ss_pred CCHHHHH
Q 044791 392 DAIEEAF 398 (623)
Q Consensus 392 g~~e~A~ 398 (623)
++.+++.
T Consensus 170 ~~~~~~~ 176 (198)
T 2fbn_A 170 KEARKKD 176 (198)
T ss_dssp HHHHC--
T ss_pred HHHHHHH
Confidence 4444443
No 156
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.10 E-value=7.3e-05 Score=64.70 Aligned_cols=94 Identities=10% Similarity=-0.075 Sum_probs=66.6
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYA 354 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~ 354 (623)
..|..+...+.+.|++++|++.|++.++.. +.+...|..+..+|.+.|++++|+..|++..+ .+...|..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 456666777777777777777777777753 23567777777777777777777777776654 23446777777777
Q ss_pred HcCChHHHHHHHHHHHHc
Q 044791 355 DNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~ 372 (623)
..|++++|+..|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 777777777777777654
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.08 E-value=5e-05 Score=69.25 Aligned_cols=92 Identities=11% Similarity=0.014 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHH
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYAD 355 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~ 355 (623)
.|..+...+.+.|++++|+++|++.++.. .-+...|..+..+|.+.|++++|+..|++..+ .+...|..+..+|..
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44445555555555555555555555432 11444555555555555555555555554432 123344445555555
Q ss_pred cCChHHHHHHHHHHHH
Q 044791 356 NGLGDEGLQLFEQMRK 371 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~ 371 (623)
.|++++|+..|++.++
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 5555555555555443
No 158
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.07 E-value=3.9e-05 Score=65.74 Aligned_cols=104 Identities=10% Similarity=0.057 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---C-------hHHHH
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---S-------MDSWH 347 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~-------~~tyn 347 (623)
..|..+...+...|++++|+.+|++.++.. ..+..++..+..+|.+.|++++|+..|+++.+. + ..+|.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456677777777888888888888777753 335677777777888888888888888776542 2 44677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044791 348 LMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAV 384 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~l 384 (623)
.+...|...|++++|...|+++.+.. |+......+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l 118 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKC 118 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHH
Confidence 77777777888888888887777653 454444333
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.06 E-value=3.1e-05 Score=67.11 Aligned_cols=92 Identities=11% Similarity=0.055 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVL 424 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~ 424 (623)
|..+...+.+.|++++|+..|++.++.. .-+...|..+..++.+.|++++|+..|+...+. .| +...|..+..+|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHH
Confidence 3444444445555555555555544432 113344444445555555555555555544421 22 233444444555
Q ss_pred HhcCCHHHHHHHHHhhC
Q 044791 425 GKCGHLFEAQQFIEQKL 441 (623)
Q Consensus 425 ~k~g~~e~A~~lf~~~m 441 (623)
...|++++|++.|++++
T Consensus 83 ~~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 83 IAVKEYASALETLDAAR 99 (126)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHH
Confidence 55555555555555433
No 160
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.03 E-value=2.8e-05 Score=66.71 Aligned_cols=103 Identities=12% Similarity=-0.008 Sum_probs=44.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-CCC----ccchhhH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGI-SPG----TEHYLGL 420 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~-~p~----~~ty~~L 420 (623)
|..+...+...|++++|+.+|++..+.. ..+...+..+...+...|++++|...++.+.....- ..+ ..+|..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3444444444444444444444444332 113344444444444445555555444444432100 011 3344444
Q ss_pred HHHHHhcCCHHHHHHHHHhhCCCCCCHHH
Q 044791 421 VGVLGKCGHLFEAQQFIEQKLPFEPTAEF 449 (623)
Q Consensus 421 i~~~~k~g~~e~A~~lf~~~m~~~Pd~~t 449 (623)
..+|.+.|++++|.+.|++++...|+...
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 114 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAEHRTPDV 114 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCHHH
Confidence 55555555555555555553333344333
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.99 E-value=9.7e-05 Score=67.30 Aligned_cols=96 Identities=7% Similarity=-0.096 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a 387 (623)
+...+..+...|.+.|++++|+..|++..+ .+...|..+..+|.+.|++++|+..|++.++... -+...|..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 356677777778888888888888877654 2455777777888888888888888888777532 246677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhh
Q 044791 388 CGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~~ 407 (623)
|...|++++|+..|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 88888888888888777743
No 162
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.98 E-value=0.00012 Score=61.35 Aligned_cols=96 Identities=19% Similarity=0.101 Sum_probs=41.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVL 424 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~ 424 (623)
|..+...+...|++++|+.+|++..+.. .-+...+..+..++...|++++|...+++.... .| +...+..+..+|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL---KPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh---CcccHHHHHHHHHHH
Confidence 3344444444444444444444444331 113334444444444444444444444444422 11 233344444445
Q ss_pred HhcCCHHHHHHHHHhhCCCCC
Q 044791 425 GKCGHLFEAQQFIEQKLPFEP 445 (623)
Q Consensus 425 ~k~g~~e~A~~lf~~~m~~~P 445 (623)
...|++++|.++|++++...|
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~ 103 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEA 103 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHhhHHHHHHHHHHHHHcCC
Confidence 555555555555554333333
No 163
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.98 E-value=0.00026 Score=59.19 Aligned_cols=92 Identities=12% Similarity=-0.056 Sum_probs=44.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHH
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYAD 355 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~ 355 (623)
.+..+...+...|++++|+++|++.++.. +.+...+..+..+|.+.|++++|+..|++..+ .+...|..+..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444555555555555555555554432 12344455555555555555555555554432 123344444455555
Q ss_pred cCChHHHHHHHHHHHH
Q 044791 356 NGLGDEGLQLFEQMRK 371 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~ 371 (623)
.|++++|...|++..+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 5555555555555443
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=0.00026 Score=62.21 Aligned_cols=95 Identities=11% Similarity=-0.072 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHH
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD----LVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHL 348 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~ 348 (623)
+...+..+...+...|++++|+++|++.++. .|+ ..+|..+..+|.+.|++++|+..|++..+ .+...|..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 4455666666666677777777777666653 344 45666666666666777777666665543 23446666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Q 044791 349 MINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 349 Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
+..+|...|++++|+..|++..+.
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc
Confidence 666666677777777777666654
No 165
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.96 E-value=0.00014 Score=63.33 Aligned_cols=93 Identities=11% Similarity=-0.065 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGY 353 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~ 353 (623)
...|..+...+...|++++|+..|++.++.. +.+...|..+..+|...|++++|+..|++..+ .+...|..+..+|
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3444444445555555555555555544432 12344444444444455555555544444432 1223444444444
Q ss_pred HHcCChHHHHHHHHHHH
Q 044791 354 ADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 354 ~~~g~~eeA~~l~~eM~ 370 (623)
...|++++|+..|++..
T Consensus 88 ~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 88 LEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 44444444444444444
No 166
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.96 E-value=0.00019 Score=81.53 Aligned_cols=216 Identities=9% Similarity=-0.059 Sum_probs=155.6
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044791 296 AKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDAR-RVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 296 A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~-~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~ 371 (623)
+..+|++++.. +.-+...|-..+..+.+.|+.++|. ++|++... .+...|-..+...-+.|++++|..+|+++++
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45667777765 3446778888888888889999997 99998765 3445677888889999999999999999986
Q ss_pred cCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhc-CC
Q 044791 372 LGL---------QPN------------EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKC-GH 429 (623)
Q Consensus 372 ~g~---------~Pd------------~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~-g~ 429 (623)
... .|+ ...|...+....+.|.++.|..+|....+.. .......|...+..-.+. ++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~-~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK-KLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG-GGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHhCCC
Confidence 410 142 2367777888888899999999999998541 111233343333333344 45
Q ss_pred HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCcccc
Q 044791 430 LFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVE 508 (623)
Q Consensus 430 ~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~ 508 (623)
.+.|..+|++++...| +...|...+......|+.+.|..+++......+... -....|..++.--.+.|.
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~---------~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSH---------LLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTT---------HHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHH---------HHHHHHHHHHHHHHHcCC
Confidence 9999999999776444 556777888888889999999999999887654210 124566777777667776
Q ss_pred ccCCcccchHHHHHHHHHHHHC
Q 044791 509 FRNPTLYRDDEKLKALNQMKES 530 (623)
Q Consensus 509 ~~~~~~~~~~eal~~~~~M~~~ 530 (623)
. +.+.++.++|.+.
T Consensus 557 ~--------~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 557 L--------NSVRTLEKRFFEK 570 (679)
T ss_dssp S--------HHHHHHHHHHHHH
T ss_pred H--------HHHHHHHHHHHHh
Confidence 5 5778888777655
No 167
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.95 E-value=0.0001 Score=65.66 Aligned_cols=91 Identities=13% Similarity=-0.077 Sum_probs=54.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHc
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADN 356 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~ 356 (623)
+..+...+.+.|++++|+++|+++++.. +.+...|..+..+|.+.|++++|+..|++... .+...|..+..+|...
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 99 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQL 99 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4445555666666666666666666543 22455666666666666666666666665543 2334556666666666
Q ss_pred CChHHHHHHHHHHHH
Q 044791 357 GLGDEGLQLFEQMRK 371 (623)
Q Consensus 357 g~~eeA~~l~~eM~~ 371 (623)
|++++|+..|++.++
T Consensus 100 g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 100 GDLDGAESGFYSARA 114 (142)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666666554
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.92 E-value=6e-05 Score=62.66 Aligned_cols=91 Identities=13% Similarity=0.051 Sum_probs=44.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh
Q 044791 315 NNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ-PNEQTFLAVFSACGS 390 (623)
Q Consensus 315 y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~-Pd~~ty~~li~a~~~ 390 (623)
+..+...+.+.|++++|+..|++..+ .+...|..+...+...|++++|+..|++..+.... .+...+..+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHH
Confidence 33444444444555555554444432 22334455555555555555555555555543210 024455555555555
Q ss_pred c-CCHHHHHHHHHHHH
Q 044791 391 A-DAIEEAFIHFESMK 405 (623)
Q Consensus 391 ~-g~~e~A~~l~~~m~ 405 (623)
. |++++|++.++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 89 IEGKEVEAEIAEARAK 104 (112)
T ss_dssp CSSCSHHHHHHHHHHG
T ss_pred HhCCHHHHHHHHHHHh
Confidence 5 55555555555555
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.90 E-value=0.00025 Score=61.78 Aligned_cols=95 Identities=8% Similarity=-0.053 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a 387 (623)
+...|..+...+.+.|++++|+..|++..+ .+...|..+..+|...|++++|+..|++..+.... +...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHHHH
Confidence 566777777777777777777777776653 23456777777777777777777777777765322 45666677777
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 044791 388 CGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~ 406 (623)
+...|++++|+..|+...+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 7777777777777776664
No 170
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.90 E-value=0.00015 Score=64.55 Aligned_cols=94 Identities=13% Similarity=0.045 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 044791 312 LVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSAC 388 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~ 388 (623)
...+..+...+.+.|++++|+.+|++... .+...|..+..+|.+.|++++|+..|++..+... -+...+..+..+|
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHH
Confidence 34555666777777777877777777654 2445677777777777777777777777776532 2445666677777
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 044791 389 GSADAIEEAFIHFESMKS 406 (623)
Q Consensus 389 ~~~g~~e~A~~l~~~m~~ 406 (623)
...|++++|+..|+...+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777777664
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.88 E-value=4.2e-05 Score=66.58 Aligned_cols=87 Identities=11% Similarity=0.113 Sum_probs=41.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044791 318 VIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAI 394 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~ 394 (623)
+...+.+.|++++|+..|++..+ .+...|..+..++...|++++|+..|++.++.... +...+..+..++...|++
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 34444455555555555554433 13334555555555555555555555555443211 334444444455555555
Q ss_pred HHHHHHHHHHH
Q 044791 395 EEAFIHFESMK 405 (623)
Q Consensus 395 e~A~~l~~~m~ 405 (623)
++|+..|++..
T Consensus 102 ~~A~~~~~~al 112 (121)
T 1hxi_A 102 NAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
No 172
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.88 E-value=7.2e-05 Score=81.50 Aligned_cols=120 Identities=14% Similarity=0.012 Sum_probs=82.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcC
Q 044791 281 YTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNG 357 (623)
Q Consensus 281 ~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g 357 (623)
..+...+.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|++.|++..+. +..+|..+..+|...|
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 334456677888888888888888753 235788888888888888888888888877653 4457888888888888
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 044791 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFSA--CGSADAIEEAFIHFE 402 (623)
Q Consensus 358 ~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a--~~~~g~~e~A~~l~~ 402 (623)
++++|++.|++..+.... +...+..+..+ +.+.|++++|+++++
T Consensus 89 ~~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888888888775321 22334444434 677788888888876
No 173
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.85 E-value=0.00072 Score=73.90 Aligned_cols=197 Identities=8% Similarity=-0.069 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHH-HHHHH
Q 044791 360 DEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEA-QQFIE 438 (623)
Q Consensus 360 eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A-~~lf~ 438 (623)
+.+..+|++++... .-+...|...+..+...|++++|..+|++.... |..... --.|+...+.++. ..+++
T Consensus 196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~----P~~~~l---~~~y~~~~e~~~~~~~l~~ 267 (493)
T 2uy1_A 196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM----SDGMFL---SLYYGLVMDEEAVYGDLKR 267 (493)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSSHH---HHHHHHHTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCcHHH---HHHHHhhcchhHHHHHHHH
Confidence 34667888887653 335677777777788899999999999999853 543321 1123332221222 12222
Q ss_pred hhCC-C-------CC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHH--HHhhhcCc
Q 044791 439 QKLP-F-------EP---TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAI--SILDGKSR 505 (623)
Q Consensus 439 ~~m~-~-------~P---d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~--~li~~~~~ 505 (623)
. .. . .+ ....|...+..+.+.++.+.|..+++.. . .+. .+...|. +.+.....
T Consensus 268 ~-~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~-----------~~~~v~i~~A~lE~~~~ 333 (493)
T 2uy1_A 268 K-YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G-NEG-----------VGPHVFIYCAFIEYYAT 333 (493)
T ss_dssp H-TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC-----------CCHHHHHHHHHHHHHHH
T ss_pred H-HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC-----------CChHHHHHHHHHHHHHC
Confidence 2 11 0 01 1245667777777788899999999888 2 111 1122333 33333221
Q ss_pred cccccCCcccchHHHHHHHHHHHHCCcccCcc-eeeeccCHHHHHHHHHHHHhHHHHHHhcccCCCCChhHHHhhH----
Q 044791 506 LVEFRNPTLYRDDEKLKALNQMKESTYVPDTR-YVLHDIDQEAKEQALLYHSERLAIAYGLISTPARTPLRIIKNL---- 580 (623)
Q Consensus 506 ~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~-t~~~li~~~~k~~~~~~~~g~l~~A~~ll~~m~~~~~~i~~~l---- 580 (623)
++. +.|.++|+...+.- |+.. .+...+ +...+.|..+.|..+++.... ...++..+
T Consensus 334 -~d~--------~~ar~ife~al~~~--~~~~~~~~~yi-------d~e~~~~~~~~aR~l~er~~k-~~~lw~~~~~fE 394 (493)
T 2uy1_A 334 -GSR--------ATPYNIFSSGLLKH--PDSTLLKEEFF-------LFLLRIGDEENARALFKRLEK-TSRMWDSMIEYE 394 (493)
T ss_dssp -CCS--------HHHHHHHHHHHHHC--TTCHHHHHHHH-------HHHHHHTCHHHHHHHHHHSCC-BHHHHHHHHHHH
T ss_pred -CCh--------HHHHHHHHHHHHHC--CCCHHHHHHHH-------HHHHHcCCHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 123 68999996665432 3322 122222 345566777788888777643 24555443
Q ss_pred hhhcchhHHHHHHHHHh
Q 044791 581 RVCGDCHNAIKIMSRIV 597 (623)
Q Consensus 581 ~~~g~~~~a~~l~~~~~ 597 (623)
...|+...+.+++.+..
T Consensus 395 ~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 395 FMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHSCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 55688888877777766
No 174
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.85 E-value=4.5e-05 Score=63.43 Aligned_cols=95 Identities=18% Similarity=0.090 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVL 424 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~ 424 (623)
.|..+...+...|++++|+..|++..+... .+..++..+..++...|++++|+..|++..+...-..+...+..+..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 445555555666666666666666555421 2344555555555555666666665555553210000234445555555
Q ss_pred Hhc-CCHHHHHHHHHhh
Q 044791 425 GKC-GHLFEAQQFIEQK 440 (623)
Q Consensus 425 ~k~-g~~e~A~~lf~~~ 440 (623)
.+. |++++|++.|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARA 103 (112)
T ss_dssp TTCSSCSHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 555 5555555555553
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.83 E-value=2.9e-05 Score=84.72 Aligned_cols=119 Identities=10% Similarity=0.011 Sum_probs=82.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044791 316 NKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD 392 (623)
Q Consensus 316 ~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g 392 (623)
..+...|.+.|++++|++.|++..+ .+..+|..+..+|.+.|++++|+..|++.++... -+..+|..+..+|...|
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g 88 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALG 88 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcC
Confidence 3345566677888888888887754 3455888888888888888888888888887632 25677788888888888
Q ss_pred CHHHHHHHHHHHHhhcCCCC-CccchhhHHHH--HHhcCCHHHHHHHHH
Q 044791 393 AIEEAFIHFESMKSEFGISP-GTEHYLGLVGV--LGKCGHLFEAQQFIE 438 (623)
Q Consensus 393 ~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~--~~k~g~~e~A~~lf~ 438 (623)
++++|++.|++..+. .| +...+..+..+ +.+.|++++|+++++
T Consensus 89 ~~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 89 KFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp CHHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 888888888887753 33 23344445444 777788888888888
No 176
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.83 E-value=0.00013 Score=64.27 Aligned_cols=99 Identities=14% Similarity=0.051 Sum_probs=61.3
Q ss_pred ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-Cccc
Q 044791 342 SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN----EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEH 416 (623)
Q Consensus 342 ~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd----~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~t 416 (623)
+...|..+...+...|++++|+.+|++..+. .|+ ...|..+..+|...|++++|+..++..... .| +...
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK---DGGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TSCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---CccCHHH
Confidence 3446666666677777777777777776653 444 455666666666677777777777666632 22 3445
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHhhCCCCC
Q 044791 417 YLGLVGVLGKCGHLFEAQQFIEQKLPFEP 445 (623)
Q Consensus 417 y~~Li~~~~k~g~~e~A~~lf~~~m~~~P 445 (623)
+..+..+|...|++++|..+|++++...|
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 55666666666666666666666444344
No 177
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.80 E-value=7e-05 Score=81.80 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=67.3
Q ss_pred HhCCCCHHHHHHHHHHHHHc--C-CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----------CCh-HHHHH
Q 044791 287 CGNPKWYENAKKVHDYFLQS--T-IRG----DLVLNNKVIEMYGKCGSMTDARRVFDHMAD----------RSM-DSWHL 348 (623)
Q Consensus 287 ~~~~g~~~~A~~l~~~m~~~--g-~~p----d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~----------~~~-~tyn~ 348 (623)
+...|++++|+.++++.++. . +.+ ...++++|..+|...|++++|+.++++..+ +++ .+|+.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34556666666666655442 0 111 145666666666666666666666665542 111 25666
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 044791 349 MINGYADNGLGDEGLQLFEQMRKL-----GL-QPNE-QTFLAVFSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 349 Li~~~~~~g~~eeA~~l~~eM~~~-----g~-~Pd~-~ty~~li~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
|...|...|++++|+.+|++.++. |- .|++ .+.+.+-.++.+.+++++|+.+|.++++.
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666665531 21 1222 23444455556666777777777666653
No 178
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.79 E-value=0.00013 Score=79.64 Aligned_cols=116 Identities=8% Similarity=-0.057 Sum_probs=57.4
Q ss_pred HcCCHHHHHHHHHHhhcC----------C-hHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----C-CCCC-HHHHHHHH
Q 044791 324 KCGSMTDARRVFDHMADR----------S-MDSWHLMINGYADNGLGDEGLQLFEQMRKL-----G-LQPN-EQTFLAVF 385 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~~----------~-~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~-----g-~~Pd-~~ty~~li 385 (623)
..|++++|+.++++..+. + ..+++.|..+|...|++++|+.++++.++. | -.|+ ..+++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 445556665555544320 1 115566666666666666666666555431 1 1122 24555566
Q ss_pred HHHHhcCCHHHHHHHHHHHHh----hcCCC-C-CccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 386 SACGSADAIEEAFIHFESMKS----EFGIS-P-GTEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 386 ~a~~~~g~~e~A~~l~~~m~~----~~g~~-p-~~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
..|...|++++|+.++++..+ .+|-. | ...+.+.|-.++...|++++|+.+|.+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~ 460 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHK 460 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666655554442 11211 1 123344444555555566666666555
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.76 E-value=0.00011 Score=79.62 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CC---------------hHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 044791 312 LVLNNKVIEMYGKCGSMTDARRVFDHMAD---RS---------------MDSWHLMINGYADNGLGDEGLQLFEQMRKLG 373 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~---------------~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g 373 (623)
...|..+...|.+.|++++|+..|++..+ .+ ..+|..+..+|.+.|++++|+..|++.++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 45666777777777777777777776643 12 2455555555556666666666665555542
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHH
Q 044791 374 LQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQ 434 (623)
Q Consensus 374 ~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~ 434 (623)
. -+...|..+..+|...|++++|+..|++.. .+.| +...+..+..++.+.|+.++|.
T Consensus 348 p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al---~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVL---EVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-ccHHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 134455555555555555555555555554 2333 2344444555555555555444
No 180
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.74 E-value=0.00042 Score=74.95 Aligned_cols=144 Identities=14% Similarity=-0.038 Sum_probs=98.1
Q ss_pred CCHHHHHHHHHcCCC--C-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHH
Q 044791 260 GKVKEAIELMDKGVK--A-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD--------------LVLNNKVIEMY 322 (623)
Q Consensus 260 g~~~~A~~l~~~~~~--p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd--------------~~~y~~Li~~y 322 (623)
+++++|++.|+..+. | ....|..+...+.+.|++++|+..|++.++..-.-. ..+|..+..+|
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555544322 2 234677788888888888888888888877422211 57788888888
Q ss_pred HHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 044791 323 GKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAF 398 (623)
Q Consensus 323 ~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~ 398 (623)
.+.|++++|+..|++..+ .+...|..+..+|...|++++|+..|++.++. .| +...+..+..++.+.++.++|.
T Consensus 328 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887764 34557888888888888888888888888764 44 3456667777777777777665
Q ss_pred -HHHHHHH
Q 044791 399 -IHFESMK 405 (623)
Q Consensus 399 -~l~~~m~ 405 (623)
.++..|.
T Consensus 406 ~~~~~~~f 413 (457)
T 1kt0_A 406 RRIYANMF 413 (457)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 3444444
No 181
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.74 E-value=0.00023 Score=61.81 Aligned_cols=86 Identities=6% Similarity=-0.170 Sum_probs=38.5
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChH
Q 044791 284 FELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGD 360 (623)
Q Consensus 284 l~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~e 360 (623)
...+.+.|++++|+..|++.++.. +-+...|..+..++.+.|++++|+..|++..+. +...|..+..+|...|+++
T Consensus 24 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~ 102 (121)
T 1hxi_A 24 GLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNAN 102 (121)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 334444444444444444444432 113444444444444444444444444444321 2234444444444445555
Q ss_pred HHHHHHHHHH
Q 044791 361 EGLQLFEQMR 370 (623)
Q Consensus 361 eA~~l~~eM~ 370 (623)
+|+..|++.+
T Consensus 103 ~A~~~~~~al 112 (121)
T 1hxi_A 103 AALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555444444
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.71 E-value=0.00023 Score=61.35 Aligned_cols=86 Identities=22% Similarity=0.097 Sum_probs=36.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC----ccchhhHHHHH
Q 044791 351 NGYADNGLGDEGLQLFEQMRKLGLQPN--EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG----TEHYLGLVGVL 424 (623)
Q Consensus 351 ~~~~~~g~~eeA~~l~~eM~~~g~~Pd--~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~----~~ty~~Li~~~ 424 (623)
..+...|++++|+..|+++.+...... ...+..+..++...|++++|...|+.+... .|+ ...+..+..+|
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHH
Confidence 334444444444444444444321100 023334444444445555555555444432 121 22333444444
Q ss_pred HhcCCHHHHHHHHHh
Q 044791 425 GKCGHLFEAQQFIEQ 439 (623)
Q Consensus 425 ~k~g~~e~A~~lf~~ 439 (623)
.+.|++++|...|++
T Consensus 87 ~~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQ 101 (129)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 455555555555544
No 183
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.69 E-value=0.00046 Score=76.83 Aligned_cols=169 Identities=12% Similarity=0.040 Sum_probs=125.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHhhcC---ChHHHHHHHHHHHHcC
Q 044791 291 KWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS----------MTDARRVFDHMADR---SMDSWHLMINGYADNG 357 (623)
Q Consensus 291 g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~----------~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g 357 (623)
..-++|+++++++++.... +..+|+.--.++.+.|+ +++|++.++++.+. +..+|+.-..++.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 3446788888888886432 56777777666766666 88888888888753 4457888888888888
Q ss_pred --ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhc------
Q 044791 358 --LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD-AIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKC------ 427 (623)
Q Consensus 358 --~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g-~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~------ 427 (623)
++++|++++++|.+...+ +..+|+.-..++.+.| .++++++.++.+++ ..| +...|+....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~---~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT---RNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT---TTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH---HCCCCccHHHHHHHHHHhhcccccc
Confidence 668899999998887543 6777877777777888 88888888888873 344 566677666666553
Q ss_pred --------CCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChh
Q 044791 428 --------GHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDID 464 (623)
Q Consensus 428 --------g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~ 464 (623)
+.+++|++++++++...| |...|..+-..+...++.+
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCS
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCcc
Confidence 568999999999777667 5688888877777766644
No 184
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.69 E-value=9.6e-05 Score=63.38 Aligned_cols=82 Identities=10% Similarity=0.012 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHH
Q 044791 290 PKWYENAKKVHDYFLQSTI--RGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQ 364 (623)
Q Consensus 290 ~g~~~~A~~l~~~m~~~g~--~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~ 364 (623)
.|++++|+..|++.++.+. +-+..++..|..+|.+.|++++|+..|++..+. +...|..+..+|...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 3455555555555555321 112344455555555555555555555544331 23344555555555555555555
Q ss_pred HHHHHHH
Q 044791 365 LFEQMRK 371 (623)
Q Consensus 365 l~~eM~~ 371 (623)
.|++.++
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.65 E-value=0.00012 Score=75.87 Aligned_cols=150 Identities=10% Similarity=-0.021 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHc
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADN 356 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~ 356 (623)
...+..+...+.+.|++++|+..|++.++. .|+... +...|+.+++...+. ..+|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH------HHHHHHHHHHHHHc
Confidence 355777888888889999999999888774 344321 223344444443331 23677788888888
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC-ccchhhHHHHH-HhcCCHHHHH
Q 044791 357 GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG-TEHYLGLVGVL-GKCGHLFEAQ 434 (623)
Q Consensus 357 g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~~-~k~g~~e~A~ 434 (623)
|++++|+..|++.++.. .-+...|..+..+|...|++++|+..|++.. .+.|+ ...+..|.... ...+..+++.
T Consensus 244 g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al---~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQ---KYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT---C---------------------------
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888887753 1256777778888888888888888887776 34443 33444444432 2345566677
Q ss_pred HHHHhhCCCCC
Q 044791 435 QFIEQKLPFEP 445 (623)
Q Consensus 435 ~lf~~~m~~~P 445 (623)
.+|.+++...|
T Consensus 320 ~~~~~~l~~~p 330 (338)
T 2if4_A 320 EMYKGIFKGKD 330 (338)
T ss_dssp -----------
T ss_pred HHHHHhhCCCC
Confidence 77776444444
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.65 E-value=6.8e-05 Score=77.76 Aligned_cols=151 Identities=9% Similarity=0.019 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 044791 312 LVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSA 391 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~ 391 (623)
...+..+...|.+.|++++|+..|++....+.... .+...|+++++...+. ..+|..+..+|.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45577788888888888888888887664332211 1222333444433221 13788899999999
Q ss_pred CCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH-HHHHHHHHH-HHHcCChhHHHH
Q 044791 392 DAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA-EFWEALRNY-ARIHGDIDLEDH 468 (623)
Q Consensus 392 g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~-~ty~~Li~a-~~~~g~~~~A~~ 468 (623)
|++++|+..++..++. .| +...|..+..+|...|++++|+..|++++.+.|+. ..+..|... ....+..+.+..
T Consensus 244 g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred CCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999853 44 56788899999999999999999999987877754 445544444 234456676777
Q ss_pred HHHHHHhcCCCC
Q 044791 469 AEELMVDLDPSK 480 (623)
Q Consensus 469 ~~~~~~~m~~~~ 480 (623)
.++.+....+..
T Consensus 321 ~~~~~l~~~p~~ 332 (338)
T 2if4_A 321 MYKGIFKGKDEG 332 (338)
T ss_dssp ------------
T ss_pred HHHHhhCCCCCC
Confidence 777777666553
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.62 E-value=0.00029 Score=73.99 Aligned_cols=111 Identities=6% Similarity=-0.039 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcC
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNG 357 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g 357 (623)
..+..+...+.+.|++++|++.|++.++. .++. ......+++.+ +...+..+|..+..+|.+.|
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~~~~~----~~~~~~~~~~nla~~~~~~g 287 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADGAK----LQPVALSCVLNIGACKLKMS 287 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHHGG----GHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChHHHHH----HHHHHHHHHHHHHHHHHhcc
Confidence 34666666666777777777777666551 0000 00000000000 01112234555555555555
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 358 ~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
++++|+..+++.++... -+...|..+..+|...|++++|++.|++..
T Consensus 288 ~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al 334 (370)
T 1ihg_A 288 DWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQ 334 (370)
T ss_dssp CHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 55555555555554321 134455555555555555555555555554
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.62 E-value=0.00053 Score=62.12 Aligned_cols=95 Identities=12% Similarity=0.003 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------C---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQS--------T---------IRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD 340 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~--------g---------~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~ 340 (623)
..+..+...+.+.|++++|++.|.+.++. . -.-+..+|..+..+|.+.|++++|+..+++..+
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34556666666777777777777666553 0 011235566666666666777777666666543
Q ss_pred ---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 341 ---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 341 ---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
.+...|..+..+|...|++++|+..|++.++.
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 23446666666666667777776666666654
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.62 E-value=0.00047 Score=62.48 Aligned_cols=93 Identities=14% Similarity=0.035 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---------------------ChHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 044791 312 LVLNNKVIEMYGKCGSMTDARRVFDHMADR---------------------SMDSWHLMINGYADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 312 ~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---------------------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~ 370 (623)
...+..+...+.+.|++++|+..|.+..+. +...|..+..+|.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666777777788888888777765432 11245555555555555555555555555
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 371 KLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 371 ~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
+.. .-+...|..+..+|...|++++|...|+...
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 432 1134455555555555555555555555544
No 190
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.61 E-value=0.00027 Score=60.83 Aligned_cols=95 Identities=14% Similarity=-0.039 Sum_probs=78.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc----cchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC----HHHHHHH
Q 044791 382 LAVFSACGSADAIEEAFIHFESMKSEFGISPGT----EHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT----AEFWEAL 453 (623)
Q Consensus 382 ~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~----~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd----~~ty~~L 453 (623)
..+...+...|++++|...|+.+.+. .|+. ..+..+..+|.+.|++++|+..|++++...|+ ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 34566788899999999999999864 3332 36777888999999999999999996655564 5678888
Q ss_pred HHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 454 RNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 454 i~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
..+|...|+.++|...++.+.+..+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 88999999999999999999887655
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.60 E-value=0.0001 Score=63.26 Aligned_cols=99 Identities=7% Similarity=-0.042 Sum_probs=51.5
Q ss_pred cCCHHHHHHHHHHhhcCC---h---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044791 325 CGSMTDARRVFDHMADRS---M---DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAF 398 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~~~---~---~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~ 398 (623)
.|++++|+..|++..+.+ . ..|..|..+|...|++++|+..|++.++.... +..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 455666666666655441 2 25566666666666666666666666654322 3455555666666666666666
Q ss_pred HHHHHHHhhcCCCCCccchhhHHHHH
Q 044791 399 IHFESMKSEFGISPGTEHYLGLVGVL 424 (623)
Q Consensus 399 ~l~~~m~~~~g~~p~~~ty~~Li~~~ 424 (623)
..|++......-.++...|...|..|
T Consensus 82 ~~~~~al~~~p~~~~~~~~~~ai~~~ 107 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQSYKQAILFY 107 (117)
T ss_dssp HHHHHHHHHHCCCHHHHHTHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 66666554322233333344444333
No 192
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.57 E-value=0.0004 Score=63.59 Aligned_cols=61 Identities=16% Similarity=0.095 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc-----CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKL-----GLQPNE-QTF----LAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~-----g~~Pd~-~ty----~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
.|+.+..++.+.|++++|+..|++.++. .+.|+. ..| .....++...|++++|+..|+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444444444555555554444444442 113432 344 555555555566666655555554
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.56 E-value=0.0005 Score=72.24 Aligned_cols=132 Identities=8% Similarity=-0.055 Sum_probs=77.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 044791 249 SVADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSM 328 (623)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~ 328 (623)
+..+...|.+.|++++|++.|++.+....... .....+++. +. -.-+..+|..+..+|.+.|++
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~--------~~~~~~~~~-------~~-~~~~~~~~~nla~~~~~~g~~ 289 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR--------AAAEDADGA-------KL-QPVALSCVLNIGACKLKMSDW 289 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--------HHSCHHHHG-------GG-HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc--------cccChHHHH-------HH-HHHHHHHHHHHHHHHHhccCH
Confidence 55667788899999999999876443110000 000111111 10 011345666777777777777
Q ss_pred HHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 044791 329 TDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP-NEQTFLAVFSACGSADAIEEAF 398 (623)
Q Consensus 329 ~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P-d~~ty~~li~a~~~~g~~e~A~ 398 (623)
++|++.|++..+. +...|..+..+|...|++++|+..|++.++. .| +...+..+..++...++.+++.
T Consensus 290 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 290 QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777766543 3446777777777777777777777777664 23 4445555555555555555544
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.55 E-value=0.00054 Score=62.77 Aligned_cols=98 Identities=10% Similarity=-0.043 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cC
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKLGLQP------N-----EQTFLAVFSACGSADAIEEAFIHFESMKSE----FG 409 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P------d-----~~ty~~li~a~~~~g~~e~A~~l~~~m~~~----~g 409 (623)
.+..+...+.+.|++++|+..|++.++..... + ...|..+..++.+.|++++|+..+++.++- ..
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34445555666666666666666665532110 1 226777777777777777777777766631 11
Q ss_pred CCCC-ccch----hhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 410 ISPG-TEHY----LGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 410 ~~p~-~~ty----~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
+.|+ ...| ..+..+|...|++++|+..|+++++
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2553 3455 6667777777777777777777443
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.37 E-value=0.0039 Score=69.27 Aligned_cols=153 Identities=7% Similarity=-0.056 Sum_probs=123.2
Q ss_pred CCHHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 044791 326 GSMTDARRVFDHMADRS---MDSWHLMINGYADNGL----------GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD 392 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~~---~~tyn~Li~~~~~~g~----------~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g 392 (623)
..-++|++.++++.+.+ ...|+.--.++...|+ +++|+++++++.+...+ +..+|+.-.-++.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 34578899999987643 3478888888888877 99999999999987543 6778888888888889
Q ss_pred --CHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcC-CHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHc-------
Q 044791 393 --AIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCG-HLFEAQQFIEQKLPFEP-TAEFWEALRNYARIH------- 460 (623)
Q Consensus 393 --~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g-~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~------- 460 (623)
+++++++.++.+.+. .| +...|+.-..++.+.| ..+++++.++++++..| |...|+.....+...
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 789999999999964 33 6778888888888888 89999999999777666 678898888877763
Q ss_pred -------CChhHHHHHHHHHHhcCCCCCC
Q 044791 461 -------GDIDLEDHAEELMVDLDPSKAD 482 (623)
Q Consensus 461 -------g~~~~A~~~~~~~~~m~~~~~~ 482 (623)
+.++++.+.++...+++|.+..
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~s 227 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQS 227 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCcc
Confidence 4468888888888888887643
No 196
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.28 E-value=0.01 Score=64.64 Aligned_cols=198 Identities=14% Similarity=0.069 Sum_probs=129.5
Q ss_pred HHHHHHHcC---CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHhh
Q 044791 264 EAIELMDKG---VKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDAR-RVFDHMA 339 (623)
Q Consensus 264 ~A~~l~~~~---~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~-~lf~~m~ 339 (623)
.+..+|++. +.-+...|-..+.-+.+.|++++|.++|++.++. +.+...|. .|+...+.++.. .+++...
T Consensus 197 Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~ 270 (493)
T 2uy1_A 197 RMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYS 270 (493)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHH
Confidence 344566542 2334566777777788889999999999999987 33333332 233322211211 1111110
Q ss_pred ------------cCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHH
Q 044791 340 ------------DRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFL--AVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 340 ------------~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~--~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
......|-..+..+.+.+..+.|..+|++.... ..+...|. +.+...+ .++.+.|..+|+...
T Consensus 271 ~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~--~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al 347 (493)
T 2uy1_A 271 MGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNE--GVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGL 347 (493)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHH
T ss_pred hhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCC--CCChHHHHHHHHHHHHH-CCChHHHHHHHHHHH
Confidence 001135777777777888999999999999221 12334443 2333322 347999999999999
Q ss_pred hhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 406 SEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 406 ~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
+.++-. ...+...++...+.|+.+.|..+|++ .. .....|...+..-...|+.+.+.++++...+
T Consensus 348 ~~~~~~--~~~~~~yid~e~~~~~~~~aR~l~er-~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKHPDS--TLLKEEFFLFLLRIGDEENARALFKR-LE--KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHCTTC--HHHHHHHHHHHHHHTCHHHHHHHHHH-SC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH-HH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 764332 33456677888889999999999999 42 3678888888887889999988887777654
No 197
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.26 E-value=0.0054 Score=54.35 Aligned_cols=107 Identities=8% Similarity=-0.070 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC-ChHHHHHHHHHHHH----cCChHHHHHHH
Q 044791 292 WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR-SMDSWHLMINGYAD----NGLGDEGLQLF 366 (623)
Q Consensus 292 ~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~-~~~tyn~Li~~~~~----~g~~eeA~~l~ 366 (623)
++++|+++|++..+.| .++.. |..+|...+.+++|++.|++..+. +...+..|...|.. .+++++|+..|
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 84 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYY 84 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 4556666666665555 22222 555555555566666666655433 33455555555555 55666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 044791 367 EQMRKLGLQPNEQTFLAVFSACGS----ADAIEEAFIHFESMKS 406 (623)
Q Consensus 367 ~eM~~~g~~Pd~~ty~~li~a~~~----~g~~e~A~~l~~~m~~ 406 (623)
++..+.| +...+..|...|.. .++.++|++.|+...+
T Consensus 85 ~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 85 SKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 6665543 34455555555555 5566666666655553
No 198
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.00036 Score=58.14 Aligned_cols=88 Identities=10% Similarity=-0.114 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC--C-------hHHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR--S-------MDSWH 347 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~--~-------~~tyn 347 (623)
...+..+...+.+.|++++|++.|++.++.. +.+..+|..+..+|.+.|++++|++.|++..+. + ...+.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3455666666666666666666666666642 224566666666666666666666666665432 1 22344
Q ss_pred HHHHHHHHcCChHHHHHH
Q 044791 348 LMINGYADNGLGDEGLQL 365 (623)
Q Consensus 348 ~Li~~~~~~g~~eeA~~l 365 (623)
.+..++...|++++|+..
T Consensus 83 ~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHHhHhhhHhH
Confidence 444445555554444433
No 199
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.17 E-value=0.00092 Score=59.45 Aligned_cols=111 Identities=11% Similarity=0.035 Sum_probs=91.0
Q ss_pred cCCHHHHHHHHHcCCCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 044791 259 EGKVKEAIELMDKGVKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK----CGSMTDARR 333 (623)
Q Consensus 259 ~g~~~~A~~l~~~~~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k----~g~~~~A~~ 333 (623)
.+++++|++.|++.... +.... |...|...+.+++|+++|++..+.| +...+..|..+|.. .++.++|++
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 35688999999652211 22233 7778888889999999999999976 67889999999998 899999999
Q ss_pred HHHHhhcC-ChHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCC
Q 044791 334 VFDHMADR-SMDSWHLMINGYAD----NGLGDEGLQLFEQMRKLGL 374 (623)
Q Consensus 334 lf~~m~~~-~~~tyn~Li~~~~~----~g~~eeA~~l~~eM~~~g~ 374 (623)
.|++..+. +..++..|...|.. .+++++|+..|++..+.|.
T Consensus 83 ~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99988764 55688999999999 8999999999999998864
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.09 E-value=0.002 Score=54.47 Aligned_cols=76 Identities=12% Similarity=0.117 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044791 295 NAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 295 ~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~ 371 (623)
+|++.|++.++.. +-+...+..+..+|.+.|++++|+..|++..+ .+...|..+..+|...|++++|...|++.++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566666666643 23567777777777777777777777776654 2344677777777777777777777777665
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.0013 Score=54.56 Aligned_cols=65 Identities=18% Similarity=0.148 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 044791 379 QTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT 446 (623)
Q Consensus 379 ~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd 446 (623)
..+..+...+...|++++|++.|++..+. .| +...|..+..+|.+.|++++|++.|++++.+.|+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITA---QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 34444455555555555555555555432 22 3344445555555555555555555554444443
No 202
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.96 E-value=0.0031 Score=67.60 Aligned_cols=81 Identities=7% Similarity=0.011 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHhhc----------CCh-HHHHHHHH
Q 044791 290 PKWYENAKKVHDYFLQS---TIRGD----LVLNNKVIEMYGKCGSMTDARRVFDHMAD----------RSM-DSWHLMIN 351 (623)
Q Consensus 290 ~g~~~~A~~l~~~m~~~---g~~pd----~~~y~~Li~~y~k~g~~~~A~~lf~~m~~----------~~~-~tyn~Li~ 351 (623)
.|++++|+.++++.++. -+.++ ..++++|..+|...|++++|+.++++..+ +++ .+|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45566666666655442 11111 35556666666666666666666655532 111 15666666
Q ss_pred HHHHcCChHHHHHHHHHHH
Q 044791 352 GYADNGLGDEGLQLFEQMR 370 (623)
Q Consensus 352 ~~~~~g~~eeA~~l~~eM~ 370 (623)
.|...|++++|+.+|++.+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHH
Confidence 6666666666666665554
No 203
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.94 E-value=0.016 Score=66.43 Aligned_cols=156 Identities=15% Similarity=0.197 Sum_probs=106.1
Q ss_pred HHHHHcCCHHHHHH-HHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044791 254 ARLCQEGKVKEAIE-LMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDAR 332 (623)
Q Consensus 254 ~~~~~~g~~~~A~~-l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~ 332 (623)
......+++++|++ ++. .+. +......++..+.+.|..++|+++.+... .-.......|++++|+
T Consensus 607 ~~~~~~~~~~~a~~~~l~-~i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLP-NVE-GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHHTTCHHHHHHHTGG-GCC-CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHH
T ss_pred hHHHHhCCHHHHHHHHHh-cCC-chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHH
Confidence 34456899999988 552 222 13344788888888999999987763211 1134556789999999
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 044791 333 RVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP 412 (623)
Q Consensus 333 ~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p 412 (623)
++.+.+ .+...|..|...+.+.|+++.|+++|.++.. |..+...+...|+.+...++-+..... |
T Consensus 673 ~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~--- 737 (814)
T 3mkq_A 673 DLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G--- 737 (814)
T ss_dssp HHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T---
T ss_pred HHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C---
Confidence 997666 3567999999999999999999999998763 334445555566666655555444432 2
Q ss_pred CccchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 413 GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 413 ~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
-++.-..+|.+.|++++|+++|.+ ++
T Consensus 738 ---~~~~A~~~~~~~g~~~~a~~~~~~-~~ 763 (814)
T 3mkq_A 738 ---KFNLAFNAYWIAGDIQGAKDLLIK-SQ 763 (814)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHH-TT
T ss_pred ---chHHHHHHHHHcCCHHHHHHHHHH-cC
Confidence 234445556667777777777777 44
No 204
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.93 E-value=0.0019 Score=54.64 Aligned_cols=76 Identities=12% Similarity=0.001 Sum_probs=44.9
Q ss_pred HHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 330 DARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 330 ~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
+|++.|++..+ .+...|..+...|...|++++|+..|++.++... -+...|..+..+|...|++++|...|+...+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555443 2344666666666666667777666666665421 1345566666666666666666666666553
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.88 E-value=0.00056 Score=62.53 Aligned_cols=97 Identities=18% Similarity=0.052 Sum_probs=54.0
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhhcCCCCC-ccchhhHHHHH
Q 044791 356 NGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADA----------IEEAFIHFESMKSEFGISPG-TEHYLGLVGVL 424 (623)
Q Consensus 356 ~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~----------~e~A~~l~~~m~~~~g~~p~-~~ty~~Li~~~ 424 (623)
.+.+++|+..+++..+.... +...|+.+..++...++ +++|+..|++.+ .+.|+ ...|..|..+|
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL---~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---LIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH---HhCcCcHHHHHHHHHHH
Confidence 33444455555444443211 33444444444444433 346666666665 34453 44566666666
Q ss_pred Hhc-----------CCHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 044791 425 GKC-----------GHLFEAQQFIEQKLPFEPTAEFWEALRNY 456 (623)
Q Consensus 425 ~k~-----------g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a 456 (623)
... |++++|++.|++++.+.|+...|...+..
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 655 47888888888877777876666554443
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.81 E-value=0.012 Score=46.68 Aligned_cols=58 Identities=17% Similarity=0.313 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~ 371 (623)
.+..+...|.+.|++++|+..|++..+ .+...|..+..++.+.|++++|+..|++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 333444444444444444444443322 1222444444444444444444444444443
No 207
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.80 E-value=0.011 Score=46.87 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHH
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGY 353 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~ 353 (623)
...+..+...+...|++++|++.|++.++.. +.+..++..+..+|.+.|++++|+..|++..+. +...+..+..++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456777777888888888888888887753 235677788888888888888888888877542 344566665555
Q ss_pred HHc
Q 044791 354 ADN 356 (623)
Q Consensus 354 ~~~ 356 (623)
.+.
T Consensus 88 ~~~ 90 (91)
T 1na3_A 88 QKQ 90 (91)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 208
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.74 E-value=0.0082 Score=64.22 Aligned_cols=61 Identities=11% Similarity=0.007 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRKL-----G-LQPN-EQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~~-----g-~~Pd-~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
+++.|..+|...|++++|+.+++++++. | -.|+ ..+++.|...|...|++++|+.++++..
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 4444444444445555554444444321 1 1111 2344444445555555555554444433
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.69 E-value=0.011 Score=48.73 Aligned_cols=62 Identities=10% Similarity=0.030 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 044791 277 ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMA 339 (623)
Q Consensus 277 ~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~ 339 (623)
...+..+..++.+.|++++|++.|++.++... -+..+|..|..+|.+.|++++|++.|++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44556666666666666666666666666432 234566666666666666666666666543
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.66 E-value=0.0048 Score=51.07 Aligned_cols=61 Identities=11% Similarity=0.138 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~ 371 (623)
+..++..+..+|.+.|++++|++.|++..+. +...|..+..+|...|++++|+..|++.++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555666666666666666666666665432 334566666666666666666666666543
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.65 E-value=0.0043 Score=66.45 Aligned_cols=83 Identities=7% Similarity=-0.064 Sum_probs=59.6
Q ss_pred HcCCHHHHHHHHHHhhc-------C---Ch-HHHHHHHHHHHHcCChHHHHHHHHHHHHc-----C-CCCC-HHHHHHHH
Q 044791 324 KCGSMTDARRVFDHMAD-------R---SM-DSWHLMINGYADNGLGDEGLQLFEQMRKL-----G-LQPN-EQTFLAVF 385 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~-------~---~~-~tyn~Li~~~~~~g~~eeA~~l~~eM~~~-----g-~~Pd-~~ty~~li 385 (623)
..|++++|+.++++..+ + ++ .+++.|..+|...|++++|+.++++.++. | -.|+ ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34778888888877643 1 11 27888888888888888888888887642 2 2233 35778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 044791 386 SACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 386 ~a~~~~g~~e~A~~l~~~m~~ 406 (623)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888776653
No 212
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.61 E-value=0.0029 Score=57.75 Aligned_cols=94 Identities=15% Similarity=0.094 Sum_probs=56.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHhhcC---ChHHHHHHHHHHHHc-
Q 044791 291 KWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS----------MTDARRVFDHMADR---SMDSWHLMINGYADN- 356 (623)
Q Consensus 291 g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~----------~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~- 356 (623)
+.+++|++.+++.++.. +-+...|..+..++...++ +++|+..|++..+. +..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 34556666666665543 2255666666666655544 34666666666542 334666677776665
Q ss_pred ----------CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 357 ----------GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387 (623)
Q Consensus 357 ----------g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a 387 (623)
|++++|+..|++.++. .|+...|...+..
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4788888888888774 6666666555544
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.58 E-value=0.012 Score=63.05 Aligned_cols=92 Identities=13% Similarity=0.085 Sum_probs=68.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh----cC-CCC-Cccc
Q 044791 350 INGYADNGLGDEGLQLFEQMRKLG---LQPN----EQTFLAVFSACGSADAIEEAFIHFESMKSE----FG-ISP-GTEH 416 (623)
Q Consensus 350 i~~~~~~g~~eeA~~l~~eM~~~g---~~Pd----~~ty~~li~a~~~~g~~e~A~~l~~~m~~~----~g-~~p-~~~t 416 (623)
+..+.+.|++++|+.++++.++.. +.++ ..+++.|..+|...|++++|+.+++++..- +| -.| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445667888999999998887542 2232 457888888999999999999888877642 12 122 3567
Q ss_pred hhhHHHHHHhcCCHHHHHHHHHhhC
Q 044791 417 YLGLVGVLGKCGHLFEAQQFIEQKL 441 (623)
Q Consensus 417 y~~Li~~~~k~g~~e~A~~lf~~~m 441 (623)
|+.|...|...|++++|+.+|++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 8888899999999999999888844
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.12 E-value=0.087 Score=54.66 Aligned_cols=64 Identities=16% Similarity=-0.042 Sum_probs=29.5
Q ss_pred ccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 414 TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 414 ~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
..+|.++..++...|++++|+..+++++.+.|+...|..+-..+...|+.++|.+.++....+.
T Consensus 277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 3344444434444455555555555443334444444444444444555555555554444443
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.08 E-value=0.027 Score=58.49 Aligned_cols=74 Identities=12% Similarity=-0.020 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHH
Q 044791 375 QPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWE 451 (623)
Q Consensus 375 ~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~ 451 (623)
..+..+|..+...+...|++++|...++++..- + |+...|..+...+.-.|+.++|.+.|++++.+.|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-E--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 346667766666666667888888888777744 3 6666666666667777888888888877776677776654
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.74 E-value=0.029 Score=64.11 Aligned_cols=45 Identities=16% Similarity=0.017 Sum_probs=20.5
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044791 354 ADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESM 404 (623)
Q Consensus 354 ~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m 404 (623)
...|++++|+++.+++ .+...|..|...+.+.|+++.|+++|..+
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3444555554443222 13344445555555555555555554443
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.72 E-value=0.034 Score=45.02 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044791 345 SWHLMINGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 345 tyn~Li~~~~~~g~~eeA~~l~~eM~~ 371 (623)
.|..+..+|...|++++|+..|++.++
T Consensus 37 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 37 AYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444444444444444444444443
No 218
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.58 E-value=0.013 Score=47.70 Aligned_cols=57 Identities=19% Similarity=0.082 Sum_probs=38.3
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 044791 283 LFELCGNPKWYENAKKVHDYFLQSTIRGDLV-LNNKVIEMYGKCGSMTDARRVFDHMAD 340 (623)
Q Consensus 283 Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-~y~~Li~~y~k~g~~~~A~~lf~~m~~ 340 (623)
....+.+.|++++|++.|+++++.. .-+.. .+..+..+|.+.|++++|++.|++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445566677777777777777653 22455 677777777777777777777777654
No 219
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=95.55 E-value=0.0006 Score=78.21 Aligned_cols=6 Identities=17% Similarity=0.224 Sum_probs=0.8
Q ss_pred HHHHHH
Q 044791 313 VLNNKV 318 (623)
Q Consensus 313 ~~y~~L 318 (623)
.+||.+
T Consensus 398 ls~Nil 403 (727)
T 4b8c_D 398 LSYNTL 403 (727)
T ss_dssp ----CC
T ss_pred eecccc
Confidence 344443
No 220
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.67 Score=42.75 Aligned_cols=129 Identities=10% Similarity=0.035 Sum_probs=79.8
Q ss_pred HHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044791 320 EMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFI 399 (623)
Q Consensus 320 ~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~ 399 (623)
.....+|+++.|.++.+++ .+...|..|.......|+++-|.+.|.+... |..+.--|.-.|+.++..+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3455678888888887766 4566788888888888888888888877653 3344444555677666555
Q ss_pred HHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 044791 400 HFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEELM 473 (623)
Q Consensus 400 l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~ 473 (623)
+-+....+ | -++.-...+.-.|+++++.++|.+ .+.-|.. +-.....|..+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~-~~r~~eA------~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAE-GGSLPLA------YAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHH-TTCHHHH------HHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHH-CCChHHH------HHHHHHcCcHHHHHHHHHHh
Confidence 54443322 2 245555667778888888888888 5522211 11122356666555555544
No 221
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.09 E-value=1.5 Score=40.32 Aligned_cols=128 Identities=15% Similarity=0.076 Sum_probs=78.3
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHH
Q 044791 286 LCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQL 365 (623)
Q Consensus 286 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l 365 (623)
.....|+++.|.++.+++ -+...|..|.....+.|+++-|++.|..... |..|.-.|.-.|+.++..++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHH
Confidence 344667788887776655 2567788888888888888888888877753 33444445556666665555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHh-cCCHHHHHHHHHhhCC
Q 044791 366 FEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGK-CGHLFEAQQFIEQKLP 442 (623)
Q Consensus 366 ~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k-~g~~e~A~~lf~~~m~ 442 (623)
-+.....| -++.....+...|+++++.++|.+.- ..| +...+++ .|-.+.|.++.+. ++
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~----r~~-------eA~~~A~t~g~~~~a~~~~~~-~~ 142 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG----SLP-------LAYAVAKANGDEAAASAFLEQ-AE 142 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT----CHH-------HHHHHHHHTTCHHHHHHHHHH-TT
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC----ChH-------HHHHHHHHcCcHHHHHHHHHH-hC
Confidence 44444443 24555555666788888877775443 111 1222222 4666777777766 44
No 222
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.41 E-value=0.078 Score=53.02 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=38.2
Q ss_pred ccchhhHHHHHHhc-----CCHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHc-CChhHHHHHHHHHHhcCCC
Q 044791 414 TEHYLGLVGVLGKC-----GHLFEAQQFIEQKLPFEPT--AEFWEALRNYARIH-GDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 414 ~~ty~~Li~~~~k~-----g~~e~A~~lf~~~m~~~Pd--~~ty~~Li~a~~~~-g~~~~A~~~~~~~~~m~~~ 479 (623)
...|..|...|.+. |+.++|.++|++++.+.|+ ..++......++.. |+.+++.+.++......+.
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 34555666666663 6666666666665555552 45555555555553 6666666666666665444
No 223
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=94.38 E-value=3.1 Score=42.34 Aligned_cols=105 Identities=14% Similarity=0.095 Sum_probs=60.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKV----HDYFLQSTIRGDLVLNNKVIEMYGKCG 326 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l----~~~m~~~g~~pd~~~y~~Li~~y~k~g 326 (623)
++...|.+.+++++|++++-.| ...+.+.|....|-++ ++-+.+.++++|......|+..+....
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 6778889999999999886432 2233344554444433 455556678888877777777776654
Q ss_pred CHH-HHHHHHHHhh----------cCChHHHHHHHHHHHHcCChHHHHHHH
Q 044791 327 SMT-DARRVFDHMA----------DRSMDSWHLMINGYADNGLGDEGLQLF 366 (623)
Q Consensus 327 ~~~-~A~~lf~~m~----------~~~~~tyn~Li~~~~~~g~~eeA~~l~ 366 (623)
.-+ +=.++.+++. ..|......+...|.+.+++.+|...|
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 311 1112222221 123445555566666666666665555
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=94.37 E-value=0.29 Score=44.01 Aligned_cols=83 Identities=6% Similarity=-0.046 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHhhcCC-h----HHHHHHHHHHHHcCChHHHH
Q 044791 292 WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG---SMTDARRVFDHMADRS-M----DSWHLMINGYADNGLGDEGL 363 (623)
Q Consensus 292 ~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g---~~~~A~~lf~~m~~~~-~----~tyn~Li~~~~~~g~~eeA~ 363 (623)
.+..+.+-|.+..+.|. ++..+...+.-++++.+ ++++++.+|++..+.+ . ..+-.|.-+|.+.|++++|.
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 45667777777777665 68888888888999988 6779999999887655 2 35666777889999999999
Q ss_pred HHHHHHHHcCCCCC
Q 044791 364 QLFEQMRKLGLQPN 377 (623)
Q Consensus 364 ~l~~eM~~~g~~Pd 377 (623)
+.++.+++. .|+
T Consensus 92 ~y~~~lL~i--eP~ 103 (152)
T 1pc2_A 92 KYVRGLLQT--EPQ 103 (152)
T ss_dssp HHHHHHHHH--CTT
T ss_pred HHHHHHHhc--CCC
Confidence 999999885 664
No 225
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=94.35 E-value=2.2 Score=43.11 Aligned_cols=106 Identities=11% Similarity=0.085 Sum_probs=63.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKK----VHDYFLQSTIRGDLVLNNKVIEMYGKCG 326 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~----l~~~m~~~g~~pd~~~y~~Li~~y~k~g 326 (623)
++...|.+.+++++|++++..| ...+.+.|....|-+ +.+-..+.++.+|......|+..+....
T Consensus 38 tl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p 106 (312)
T 2wpv_A 38 TIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD 106 (312)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 6777888888888888876443 223334455544444 3445555677777777777777766543
Q ss_pred CHH-HHHHHHHHhh----------cCChHHHHHHHHHHHHcCChHHHHHHHH
Q 044791 327 SMT-DARRVFDHMA----------DRSMDSWHLMINGYADNGLGDEGLQLFE 367 (623)
Q Consensus 327 ~~~-~A~~lf~~m~----------~~~~~tyn~Li~~~~~~g~~eeA~~l~~ 367 (623)
.-+ +=.++++++. ..+...+..+...|.+.|++.+|...|-
T Consensus 107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 211 1122222222 1245567777777788888777777653
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=93.25 E-value=0.36 Score=39.99 Aligned_cols=63 Identities=10% Similarity=0.009 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 044791 276 DASCFYTLFELCGNPKWYENAKKVHDYFLQST------IRGDLVLNNKVIEMYGKCGSMTDARRVFDHM 338 (623)
Q Consensus 276 d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g------~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m 338 (623)
+...+..|...+.+.|+++.|...|+..++.- -.....++..|..+|.+.|++++|+.++++.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 33344455555555555555555555544320 0122344444555555555555555554444
No 227
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=93.22 E-value=4.1 Score=35.82 Aligned_cols=138 Identities=12% Similarity=0.023 Sum_probs=77.7
Q ss_pred HcCCHHHHHHHHHcCCCC-CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044791 258 QEGKVKEAIELMDKGVKA-DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFD 336 (623)
Q Consensus 258 ~~g~~~~A~~l~~~~~~p-d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~ 336 (623)
-.|.+++..++..+-+.+ +..-||-+|.-....-+-+-..++++.+-+ -.|. ..+|++......|-
T Consensus 19 ldG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi~C~~ 85 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVVECGV 85 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHHHHHH
Confidence 345555656655543333 223344444444444444444444433322 1121 23444444444443
Q ss_pred HhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 044791 337 HMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGIS 411 (623)
Q Consensus 337 ~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~ 411 (623)
.+- .+..-.+..++.+...|+-|.-.+++.+++. ...|+......+..||.+.|+..+|.+++.+..++ |++
T Consensus 86 ~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~k 157 (172)
T 1wy6_A 86 INN-TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK 157 (172)
T ss_dssp HTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred Hhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hhH
Confidence 332 2334556667777888888888888877543 34667777777888888888888888888877765 653
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.05 E-value=0.36 Score=43.42 Aligned_cols=86 Identities=14% Similarity=0.074 Sum_probs=64.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhhcCCCC--CccchhhHHHHHHhcCCHHHH
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSAD---AIEEAFIHFESMKSEFGISP--GTEHYLGLVGVLGKCGHLFEA 433 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g---~~e~A~~l~~~m~~~~g~~p--~~~ty~~Li~~~~k~g~~e~A 433 (623)
...+.+-|.+..+.|. ++..+...+..++++.+ ++++++.+|++..+. . .| ....+-.|.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHH
Confidence 4566677777776665 67777778888888888 677999999998865 3 23 234445567788999999999
Q ss_pred HHHHHhhCCCCCCH
Q 044791 434 QQFIEQKLPFEPTA 447 (623)
Q Consensus 434 ~~lf~~~m~~~Pd~ 447 (623)
.++++.+++++|+-
T Consensus 91 ~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 91 LKYVRGLLQTEPQN 104 (152)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHhcCCCC
Confidence 99999977778854
No 229
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=92.84 E-value=0.0019 Score=68.67 Aligned_cols=232 Identities=13% Similarity=0.102 Sum_probs=165.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044791 247 PPSVADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG 326 (623)
Q Consensus 247 ~~~~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g 326 (623)
.+|..|..+..+.+++.+|++-|-+.- |...|..+|.++.+.|.+++-++++...++.. .+..+=+.|+-+|+|.+
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyIkA~--Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~ 130 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYIKAD--DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTN 130 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSCCCS--CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSC
T ss_pred cHHHHHHHHHHccCchHHHHHHHHhCC--ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhC
Confidence 445577888899999999998885543 34478999999999999999999987776653 34556678999999999
Q ss_pred CHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------------------CCCCCHHHHHHHHH
Q 044791 327 SMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKL--------------------GLQPNEQTFLAVFS 386 (623)
Q Consensus 327 ~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~--------------------g~~Pd~~ty~~li~ 386 (623)
++.+-++++ ..+++.-...+.+-|...|.++.|.-+|..+..- .-.-+..||--+-.
T Consensus 131 rL~elEefl---~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ 207 (624)
T 3lvg_A 131 RLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCF 207 (624)
T ss_dssp SSSTTTSTT---SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTH
T ss_pred cHHHHHHHH---cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 977644432 2356666677777788888888887777654321 01236678999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCChhH
Q 044791 387 ACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFE-PTAEFWEALRNYARIHGDIDL 465 (623)
Q Consensus 387 a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~-Pd~~ty~~Li~a~~~~g~~~~ 465 (623)
+|...+.+..|--.--.++ ........|+.-|-+.|.++|-+.+++..++.+ ...-.|+-|.-.|++- +.+
T Consensus 208 ACvd~~EfrLAqicGLniI------vhadeL~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILYsKY-~Pe- 279 (624)
T 3lvg_A 208 ACVDGKEFRLAQMCGLHIV------VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQ- 279 (624)
T ss_dssp HHHHSCTTTTTTHHHHHHH------CCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHHHSS-CTT-
T ss_pred HHhCchHHHHHHHhcchhc------ccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhc-CHH-
Confidence 9999998877655443333 233445568888999999999999999977744 5788999998888866 455
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccc
Q 044791 466 EDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEF 509 (623)
Q Consensus 466 A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~ 509 (623)
++.+.++-.-.+. -.-.+|++|.....|
T Consensus 280 --KlmEHlklf~sri--------------NipKviracE~ahLW 307 (624)
T 3lvg_A 280 --KMREHLELFWSRV--------------NIPKVLRAAEQAHLW 307 (624)
T ss_dssp --HHHHHHTTSSSSS--------------CCTTTHHHHTTTTCH
T ss_pred --HHHHHHHHHHHhc--------------cHHHHHHHHHHHhhH
Confidence 5555554432221 222467777777776
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.50 E-value=0.39 Score=39.77 Aligned_cols=65 Identities=11% Similarity=0.012 Sum_probs=29.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-----CCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC
Q 044791 381 FLAVFSACGSADAIEEAFIHFESMKSEFGI-----SPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP 445 (623)
Q Consensus 381 y~~li~a~~~~g~~e~A~~l~~~m~~~~g~-----~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P 445 (623)
+..|...+.+.|+++.|...|+...+...- .....++..|..+|.+.|++++|+.++++++.+.|
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P 77 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP 77 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 334444444455555555444444432100 11223444555555555555555555555443444
No 231
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=92.37 E-value=1.5 Score=35.52 Aligned_cols=62 Identities=5% Similarity=-0.101 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 311 DLVLNNKVIEMYGKCGS---MTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~---~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
|...+..+..++...++ .++|..+|++..+. ++.....+...+.+.|++++|+..|+++++.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555555543333 45555555555432 2334555555555555555555555555543
No 232
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.98 E-value=0.91 Score=36.92 Aligned_cols=67 Identities=7% Similarity=-0.139 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCC
Q 044791 275 ADASCFYTLFELCGNPKW---YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRS 342 (623)
Q Consensus 275 pd~~ty~~Ll~~~~~~g~---~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~ 342 (623)
.|...+..+..++...++ .++|..++++.++.. +-++.....|...+.+.|++++|+..|+++.+.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 355566666666654433 688999998888864 2357788888888889999999999999887643
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=91.11 E-value=0.97 Score=45.15 Aligned_cols=88 Identities=11% Similarity=0.150 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHhhc--C--ChHHHHHHHHHHHHc-CCh
Q 044791 293 YENAKKVHDYFLQSTIRGD---LVLNNKVIEMYGKC-----GSMTDARRVFDHMAD--R--SMDSWHLMINGYADN-GLG 359 (623)
Q Consensus 293 ~~~A~~l~~~m~~~g~~pd---~~~y~~Li~~y~k~-----g~~~~A~~lf~~m~~--~--~~~tyn~Li~~~~~~-g~~ 359 (623)
+..|..++++.++ +.|+ -..|..|...|.+. |+.++|.+.|++..+ + ++.++......+++. |+.
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4566677777777 4565 45788888888884 888888888887764 3 366777777877774 888
Q ss_pred HHHHHHHHHHHHcCCC--CCHHHHH
Q 044791 360 DEGLQLFEQMRKLGLQ--PNEQTFL 382 (623)
Q Consensus 360 eeA~~l~~eM~~~g~~--Pd~~ty~ 382 (623)
++|.++|++.+..... |+....+
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHH
Confidence 8888888888887666 6644333
No 234
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.46 E-value=10 Score=40.19 Aligned_cols=182 Identities=12% Similarity=0.091 Sum_probs=117.7
Q ss_pred CCHHHHHHHH---Hc------CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCCCCHHH--HHHHHHHHHHcCC
Q 044791 260 GKVKEAIELM---DK------GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQ-STIRGDLVL--NNKVIEMYGKCGS 327 (623)
Q Consensus 260 g~~~~A~~l~---~~------~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~-~g~~pd~~~--y~~Li~~y~k~g~ 327 (623)
|++++|++.+ ++ ...-.......++..|.+.|+++...+.+..+.+ .|......+ ...++..+.....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 7789998876 22 3344566788899999999999999888776654 344333222 1223333333333
Q ss_pred HHH--HHHHHHHhhc---C-------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHh
Q 044791 328 MTD--ARRVFDHMAD---R-------SMDSWHLMINGYADNGLGDEGLQLFEQMRKL--GLQPN---EQTFLAVFSACGS 390 (623)
Q Consensus 328 ~~~--A~~lf~~m~~---~-------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~--g~~Pd---~~ty~~li~a~~~ 390 (623)
.+. -+.+.+.... . .......|...|...|++.+|..++.++... |.... ...|...+..|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 332 2223322211 0 0114566888899999999999999998632 32222 3466777888999
Q ss_pred cCCHHHHHHHHHHHHhhc-CC--CCC--ccchhhHHHHHHhcCCHHHHHHHHHhhC
Q 044791 391 ADAIEEAFIHFESMKSEF-GI--SPG--TEHYLGLVGVLGKCGHLFEAQQFIEQKL 441 (623)
Q Consensus 391 ~g~~e~A~~l~~~m~~~~-g~--~p~--~~ty~~Li~~~~k~g~~e~A~~lf~~~m 441 (623)
.+++..|..++..+..+. .. .|+ ...|..++..+...+++.+|...|.+++
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999998875321 11 122 3456777888888999999999888833
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.27 E-value=2.3 Score=44.32 Aligned_cols=69 Identities=16% Similarity=0.204 Sum_probs=39.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----hcCCCCCcc
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKS----EFGISPGTE 415 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~----~~g~~p~~~ 415 (623)
...++.++...|++++|+..+..+.... .-+...|-.+|.++.+.|+..+|++.|+.+.+ +.|+.|...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3345555666666666666666665442 22555666666666666666666666665443 235555443
No 236
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.08 E-value=17 Score=36.56 Aligned_cols=140 Identities=18% Similarity=0.075 Sum_probs=91.0
Q ss_pred HHHHHHcCCHHHHHHH-------HH-cCCCCCHHHHHHHHHHHhCCCCHH-HHHHHHHHHH----HcC--CCCCHHHHHH
Q 044791 253 LARLCQEGKVKEAIEL-------MD-KGVKADASCFYTLFELCGNPKWYE-NAKKVHDYFL----QST--IRGDLVLNNK 317 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l-------~~-~~~~pd~~ty~~Ll~~~~~~g~~~-~A~~l~~~m~----~~g--~~pd~~~y~~ 317 (623)
...+.+.|+...|-++ |+ .++.+|.....-|+..+..-..-+ .=.+++++++ +.| -.-|...+..
T Consensus 60 a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ 139 (312)
T 2wpv_A 60 ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNT 139 (312)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHH
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHH
Confidence 4456778998888765 33 488899988888888876643211 2234445554 332 2247899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHc---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 044791 318 VIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADN---GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAI 394 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~---g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~ 394 (623)
+...|.+.|++.+|+..|-.-...+...+..++.-+... |...++.-+.-+ ++| -|.-.|++
T Consensus 140 ~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~R--------------aVL-~yL~l~n~ 204 (312)
T 2wpv_A 140 IGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSR--------------LVF-NYLFISNI 204 (312)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--------------HHH-HHHHTTBH
T ss_pred HHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHH--------------HHH-HHHHhcCH
Confidence 999999999999999987522222455666666665555 554443222222 222 34457899
Q ss_pred HHHHHHHHHHHhh
Q 044791 395 EEAFIHFESMKSE 407 (623)
Q Consensus 395 e~A~~l~~~m~~~ 407 (623)
..|..+|+...++
T Consensus 205 ~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 205 SFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999998877654
No 237
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.48 E-value=15 Score=38.34 Aligned_cols=220 Identities=12% Similarity=0.055 Sum_probs=135.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHc-----CCCC---CHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC--CCC---HHH
Q 044791 249 SVADLARLCQEGKVKEAIELMDK-----GVKA---DASCFYTLFELCGNP-KWYENAKKVHDYFLQSTI--RGD---LVL 314 (623)
Q Consensus 249 ~~~li~~~~~~g~~~~A~~l~~~-----~~~p---d~~ty~~Ll~~~~~~-g~~~~A~~l~~~m~~~g~--~pd---~~~ 314 (623)
...|...|++.|+.++..+++.. +.-+ .......||+.+... +..+.-.++..+.++..- ... ..+
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44778889999999999999964 1122 224577888888775 455666666666554211 111 112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhc----CC-----hHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCHHHHHH
Q 044791 315 NNKVIEMYGKCGSMTDARRVFDHMAD----RS-----MDSWHLMINGYADNGLGDEGLQLFEQMRKL--GLQPNEQTFLA 383 (623)
Q Consensus 315 y~~Li~~y~k~g~~~~A~~lf~~m~~----~~-----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~--g~~Pd~~ty~~ 383 (623)
=..|+..|...|++.+|.+++.++.+ .| +..|-.-+..|...+++.++..++...... .+.++...-..
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 23689999999999999999988864 11 226888888999999999999999888642 23234333322
Q ss_pred H----HHHHH-hcCCHHHHHHHHHHHHhhcCCCC-----CccchhhHHHHHHhcCCHHHHHHHHHh----hCCCCCCHHH
Q 044791 384 V----FSACG-SADAIEEAFIHFESMKSEFGISP-----GTEHYLGLVGVLGKCGHLFEAQQFIEQ----KLPFEPTAEF 449 (623)
Q Consensus 384 l----i~a~~-~~g~~e~A~~l~~~m~~~~g~~p-----~~~ty~~Li~~~~k~g~~e~A~~lf~~----~m~~~Pd~~t 449 (623)
+ ...+. ..+++..|...|-+..+.+.-.- +...|..|...+. ++..+...++.. .. ..|+...
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~--~~r~el~~~l~~~~~~~~-~~pei~~ 258 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIML--GQSDDVNQLVSGKLAITY-SGRDIDA 258 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHSHHHHTT-CSHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHc--CCHHHHHHHhcccccccc-CCccHHH
Confidence 2 22355 78999999988877765443111 1223433333332 222222222221 02 3466667
Q ss_pred HHHHHHHHHHcCChhHHHHHHHH
Q 044791 450 WEALRNYARIHGDIDLEDHAEEL 472 (623)
Q Consensus 450 y~~Li~a~~~~g~~~~A~~~~~~ 472 (623)
+..|+.+|. .+++.....+++.
T Consensus 259 l~~L~~a~~-~~dl~~f~~iL~~ 280 (394)
T 3txn_A 259 MKSVAEASH-KRSLADFQAALKE 280 (394)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHH-hCCHHHHHHHHHH
Confidence 777777764 6777744444443
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=89.26 E-value=3 Score=36.07 Aligned_cols=84 Identities=7% Similarity=-0.054 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHhhcCC-h----HHHHHHHHHHHHcCChHHH
Q 044791 291 KWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTD---ARRVFDHMADRS-M----DSWHLMINGYADNGLGDEG 362 (623)
Q Consensus 291 g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~---A~~lf~~m~~~~-~----~tyn~Li~~~~~~g~~eeA 362 (623)
..+..+.+-|.+....|. ++..+-..+.-++.+....++ ++.+++++.+.+ . ...-.|.-|+.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 345556666666666554 677777778888888776655 888888887655 2 1455567778888999999
Q ss_pred HHHHHHHHHcCCCCC
Q 044791 363 LQLFEQMRKLGLQPN 377 (623)
Q Consensus 363 ~~l~~eM~~~g~~Pd 377 (623)
.+.++.+++. .|+
T Consensus 94 ~~~~~~lL~~--eP~ 106 (126)
T 1nzn_A 94 LKYVRGLLQT--EPQ 106 (126)
T ss_dssp HHHHHHHHHH--CTT
T ss_pred HHHHHHHHHh--CCC
Confidence 9888888875 554
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=87.49 E-value=4 Score=46.29 Aligned_cols=125 Identities=13% Similarity=0.120 Sum_probs=82.5
Q ss_pred HHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHhhc-----------CChH-
Q 044791 279 CFYTLFELCGNPKW-YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG-SMTDARRVFDHMAD-----------RSMD- 344 (623)
Q Consensus 279 ty~~Ll~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g-~~~~A~~lf~~m~~-----------~~~~- 344 (623)
....|++.+...++ ++.|..+|+++.+....-+......+|..+.+.+ +--+|.+++.+..+ .+..
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34566777777777 5889999999988643222333334444444433 23345555544321 2221
Q ss_pred ---------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 345 ---------SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN-EQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 345 ---------tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd-~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
..+.=...|...|+++-|+++-++.+.. .|+ -.||-.|..+|...|++|.|+-.++.+-
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1111133477789999999999998875 565 5899999999999999999999988773
No 240
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.18 E-value=4.7 Score=48.32 Aligned_cols=145 Identities=10% Similarity=-0.018 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-----------------
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRG----------------- 310 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p----------------- 310 (623)
....++..+.+.+..+.|.++..- +.-+....-.+..+|...|++++|.++|.+.-. |+..
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~-~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGW-LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhh-ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 344567777888888888776532 344555556677788889999999999976421 1110
Q ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc----CCh----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 044791 311 ------DLVLNNKVIEMYGKCGSMTDARRVFDHMAD----RSM----DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP 376 (623)
Q Consensus 311 ------d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~----~~~----~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P 376 (623)
-..-|..++..+-+.+..+.|+++-....+ .+. ..|..+.+++...|++++|...+-.+.....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r- 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK- 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC-
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH-
Confidence 123477889999999999888876654332 222 16899999999999999999999888765443
Q ss_pred CHHHHHHHHHHHHhcCCHHH
Q 044791 377 NEQTFLAVFSACGSADAIEE 396 (623)
Q Consensus 377 d~~ty~~li~a~~~~g~~e~ 396 (623)
......||..+|+.|.++.
T Consensus 971 -~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 971 -KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp -HHHHHHHHHHHHHHCCHHH
T ss_pred -HHHHHHHHHHHHhCCChhh
Confidence 4556667777777666543
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=86.49 E-value=4.4 Score=45.96 Aligned_cols=124 Identities=10% Similarity=0.016 Sum_probs=79.7
Q ss_pred HHHHHHHHHHcCC-HHHHHHHHHHhhcCChH--H-HH-HHHHHHHHcC-ChHHHHHHHHHHHHc------CCCC-CHH--
Q 044791 315 NNKVIEMYGKCGS-MTDARRVFDHMADRSMD--S-WH-LMINGYADNG-LGDEGLQLFEQMRKL------GLQP-NEQ-- 379 (623)
Q Consensus 315 y~~Li~~y~k~g~-~~~A~~lf~~m~~~~~~--t-yn-~Li~~~~~~g-~~eeA~~l~~eM~~~------g~~P-d~~-- 379 (623)
...|+..+...|+ ++.|+.+|+++.+.+.. . |. ++|..+...+ +--+|..++.+.++. .+.+ +..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3455555555666 68899999998776543 2 22 2333322222 233566666655431 1222 111
Q ss_pred ---HH-HHH----HHHHHhcCCHHHHHHHHHHHHhhcCCCC-CccchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 380 ---TF-LAV----FSACGSADAIEEAFIHFESMKSEFGISP-GTEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 380 ---ty-~~l----i~a~~~~g~~e~A~~l~~~m~~~~g~~p-~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
.+ ..| ...|...|+++.|+++-.+.. .+.| +..+|..|..+|.+.|+++.|+-.++. +.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV---~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS-cP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTST---ELALDSFESWYNLARCHIKKEEYEKALFAINS-MP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH-SC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHH---hcCchhhHHHHHHHHHHHHhccHHHHHHHHhc-CC
Confidence 01 112 334667899999999999887 5566 578999999999999999999999988 54
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=84.59 E-value=2.4 Score=44.18 Aligned_cols=107 Identities=16% Similarity=0.217 Sum_probs=78.4
Q ss_pred CCHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHc--CC-CCCH------------------HHHHHHHHHHHHcCCHHH
Q 044791 275 ADASCFYTLFELCG---NPKWYENAKKVHDYFLQS--TI-RGDL------------------VLNNKVIEMYGKCGSMTD 330 (623)
Q Consensus 275 pd~~ty~~Ll~~~~---~~g~~~~A~~l~~~m~~~--g~-~pd~------------------~~y~~Li~~y~k~g~~~~ 330 (623)
.|...|..++.... ..|+.+.|.+.+.+++.. |- -++. .+...++.++...|+.++
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~ 189 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASA 189 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 45566766665433 357888888888887764 21 1111 123346677788999999
Q ss_pred HHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHH-----HcCCCCCHHHH
Q 044791 331 ARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMR-----KLGLQPNEQTF 381 (623)
Q Consensus 331 A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~-----~~g~~Pd~~ty 381 (623)
|+..+..+... +...|..||.+|.+.|+..+|++.|+++. +.|+.|+..+-
T Consensus 190 a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 190 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 99998887653 45599999999999999999999999975 45999987754
No 243
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=83.92 E-value=5.5 Score=34.41 Aligned_cols=69 Identities=9% Similarity=-0.016 Sum_probs=34.2
Q ss_pred CCccchhhHHHHHHhcCCHHH---HHHHHHhhCCCC-C-CH-HHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCC
Q 044791 412 PGTEHYLGLVGVLGKCGHLFE---AQQFIEQKLPFE-P-TA-EFWEALRNYARIHGDIDLEDHAEELMVDLDPSK 480 (623)
Q Consensus 412 p~~~ty~~Li~~~~k~g~~e~---A~~lf~~~m~~~-P-d~-~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~ 480 (623)
++..+--.+..++++.....+ ++.++++.+... | +. ...-.|.-++.+.|+++.|.+.++.+.+++|.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n 107 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence 334444444555555444333 555555533322 2 11 222233345666666666666666666666554
No 244
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.70 E-value=7.2 Score=41.38 Aligned_cols=241 Identities=9% Similarity=-0.028 Sum_probs=139.3
Q ss_pred cCCChHHHHHHHHHhcCCCCCCCccCCccccccCCCCCCCCchHHHHHHHHHHHcCCHHHHHHHHH-----cCCCCCHHH
Q 044791 205 QNQGYPQARNSYQQVSPGHQIPNQLNNVPNNMNQCPAGDQVLPPSVADLARLCQEGKVKEAIELMD-----KGVKADASC 279 (623)
Q Consensus 205 ~~g~~~~A~~lf~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~-----~~~~pd~~t 279 (623)
..|+++.|++.+-.+.+..... .....+......++..|...|+++...+.+. +|......+
T Consensus 28 ~~~~~~~a~e~ll~lEK~~r~~-------------~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~ 94 (445)
T 4b4t_P 28 AQNDCNSALDQLLVLEKKTRQA-------------SDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQ 94 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHSSS-------------CSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhhhc-------------cchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHH
Confidence 4578888988876653311111 1122234566688889999999999876652 243333322
Q ss_pred --HHHHHHHHhCCCCHHHH--HHHHHHHHH--cC-CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-----CC--
Q 044791 280 --FYTLFELCGNPKWYENA--KKVHDYFLQ--ST-IRG---DLVLNNKVIEMYGKCGSMTDARRVFDHMAD-----RS-- 342 (623)
Q Consensus 280 --y~~Ll~~~~~~g~~~~A--~~l~~~m~~--~g-~~p---d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~-----~~-- 342 (623)
...++..+......+.. ..+.+.... .| +-. .......|...|-..|++.+|.+++.++.. .+
T Consensus 95 ~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~ 174 (445)
T 4b4t_P 95 YMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMS 174 (445)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHH
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHH
Confidence 22233333223333322 222221111 11 111 134456789999999999999999998752 11
Q ss_pred --hHHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc
Q 044791 343 --MDSWHLMINGYADNGLGDEGLQLFEQMRK----LGLQPN--EQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGT 414 (623)
Q Consensus 343 --~~tyn~Li~~~~~~g~~eeA~~l~~eM~~----~g~~Pd--~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~ 414 (623)
+..|...+..|...+++.+|..++.++.. ....|+ ..-|..++..+...+++.+|...|.++...+...-|.
T Consensus 175 ~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~ 254 (445)
T 4b4t_P 175 EKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDE 254 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCH
Confidence 23788888999999999999999998753 222222 2456777778888999999998888877543333333
Q ss_pred cchhhH-----HHHH-HhcCC--HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 044791 415 EHYLGL-----VGVL-GKCGH--LFEAQQFIEQKLPFEPTAEFWEALRNYARIH 460 (623)
Q Consensus 415 ~ty~~L-----i~~~-~k~g~--~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~ 460 (623)
..+..+ +.+. +..+. .+-.-.++.. - .-++...|..|+.+|...
T Consensus 255 ~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~-~-~~~~l~~~~~L~k~f~~~ 306 (445)
T 4b4t_P 255 AKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQND-N-NLKKLESQESLVKLFTTN 306 (445)
T ss_dssp HHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHH-S-SCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhc-c-cccccHHHHHHHHHHHhc
Confidence 222221 1111 11221 2222223332 1 124667888999998754
No 245
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=83.69 E-value=3.8 Score=39.31 Aligned_cols=206 Identities=11% Similarity=0.028 Sum_probs=103.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHc
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADAS---CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLV--LNNKVIEMYGKC 325 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~---ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--~y~~Li~~y~k~ 325 (623)
+.+...++.|+++....+++.|..++.. .-.+.+...+..|+.+- ++.+++.|..++.. .-.+.+...++.
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDI----VELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 5677788999999998899887665432 11234444455677654 44455556554321 112344555667
Q ss_pred CCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH------------HHHHHHHHHh
Q 044791 326 GSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQT------------FLAVFSACGS 390 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~t------------y~~li~a~~~ 390 (623)
|+.+-+..+++.-... +...++.|. ..+..|..+ +++.+.+.|..++... -.+.+...+.
T Consensus 83 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 157 (285)
T 1wdy_A 83 GSVKLLKLFLSKGADVNECDFYGFTAFM-EAAVYGKVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCBCTTCCBHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred CCHHHHHHHHHcCCCCCccCcccCCHHH-HHHHhCCHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHH
Confidence 8877766666542221 222233333 335566644 4445556665554220 1133444556
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCC---ccchhhHHHHHHhcCC---HHHHHHHHHhhCCCCCCHH--HHHHHHHHHHHcCC
Q 044791 391 ADAIEEAFIHFESMKSEFGISPG---TEHYLGLVGVLGKCGH---LFEAQQFIEQKLPFEPTAE--FWEALRNYARIHGD 462 (623)
Q Consensus 391 ~g~~e~A~~l~~~m~~~~g~~p~---~~ty~~Li~~~~k~g~---~e~A~~lf~~~m~~~Pd~~--ty~~Li~a~~~~g~ 462 (623)
.|..+-+..+++. .|..++ ....+.|..+ +..|. ..+..+++-+ .+..++.. .-.+.+...+..|+
T Consensus 158 ~~~~~~v~~Ll~~----~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~ 231 (285)
T 1wdy_A 158 KGHVEVLKILLDE----MGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAVEKKH 231 (285)
T ss_dssp HTCHHHHHHHHHT----SCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHHHTTC
T ss_pred cCCHHHHHHHHHh----cCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHH-cCCCCCCcCCCCCcHHHHHHHcCC
Confidence 6777655555432 244443 2334444444 34444 2445555544 33222221 11223344456777
Q ss_pred hhHHHHHHHHHHh
Q 044791 463 IDLEDHAEELMVD 475 (623)
Q Consensus 463 ~~~A~~~~~~~~~ 475 (623)
.+ +.+.+.+
T Consensus 232 ~~----~v~~Ll~ 240 (285)
T 1wdy_A 232 LG----LVQRLLE 240 (285)
T ss_dssp HH----HHHHHHH
T ss_pred HH----HHHHHHh
Confidence 75 4444444
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.09 E-value=10 Score=45.38 Aligned_cols=59 Identities=8% Similarity=-0.084 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC---ccchhhHHHHHHhcCCHHHHHHHHHh
Q 044791 381 FLAVFSACGSADAIEEAFIHFESMKSEFGISPG---TEHYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 381 y~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~---~~ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
|..++..+.+.+.++.+.++-...++..+-..+ ...|..+..++...|++++|...+-.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~ 963 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV 963 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence 344444444455555544444433322111110 11344444555555555555444433
No 247
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=81.68 E-value=11 Score=33.68 Aligned_cols=99 Identities=10% Similarity=0.177 Sum_probs=56.1
Q ss_pred CChHHHHHHHHHHHHcCCh------HHHHHHHHHHHHcCCCCCH----HHHHHHHH---HHHhcCCHHHHHHHHHHHHhh
Q 044791 341 RSMDSWHLMINGYADNGLG------DEGLQLFEQMRKLGLQPNE----QTFLAVFS---ACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 341 ~~~~tyn~Li~~~~~~g~~------eeA~~l~~eM~~~g~~Pd~----~ty~~li~---a~~~~g~~e~A~~l~~~m~~~ 407 (623)
.|..+|-..|..+-+.|+. ++..++|++.... +.|+. ..|--|.- .+...+++++|.++|+.++..
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4555666666666666766 6666677766653 34421 11111111 122347788888888887753
Q ss_pred cCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 408 FGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 408 ~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
+-.- ...|.....--.+.|++.+|.+++.++++
T Consensus 90 -hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG 122 (161)
T 4h7y_A 90 -CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVE 122 (161)
T ss_dssp -CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 2222 44444444445667888888888888554
No 248
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.63 E-value=21 Score=37.08 Aligned_cols=164 Identities=10% Similarity=-0.005 Sum_probs=107.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHc-CCHHHHHHHHHHhhc---CChHHH---
Q 044791 278 SCFYTLFELCGNPKWYENAKKVHDYFLQS-TIRG---DLVLNNKVIEMYGKC-GSMTDARRVFDHMAD---RSMDSW--- 346 (623)
Q Consensus 278 ~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~-g~~p---d~~~y~~Li~~y~k~-g~~~~A~~lf~~m~~---~~~~ty--- 346 (623)
.+...|...|.+.|+.++..+++..++.. +..+ .......||+.+... +..+.-.++..+..+ ..-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778889999999999999988776432 1111 345667888888775 445555555554432 111123
Q ss_pred ---HHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhc-CCCCCccch
Q 044791 347 ---HLMINGYADNGLGDEGLQLFEQMRKLGLQPN-----EQTFLAVFSACGSADAIEEAFIHFESMKSEF-GISPGTEHY 417 (623)
Q Consensus 347 ---n~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd-----~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~-g~~p~~~ty 417 (623)
.-|+..|...|++.+|..++.++.+.=-+.| ...|..-+..|...+++.++...+....... .+.++..+-
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 2578889999999999999999986311212 2345666778889999999999998776432 222333222
Q ss_pred hh----HHHHHH-hcCCHHHHHHHHHhhC
Q 044791 418 LG----LVGVLG-KCGHLFEAQQFIEQKL 441 (623)
Q Consensus 418 ~~----Li~~~~-k~g~~e~A~~lf~~~m 441 (623)
.. -.-++. ..+++.+|...|-+++
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 11 122345 7899999998887743
No 249
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=81.19 E-value=6.4 Score=32.55 Aligned_cols=64 Identities=19% Similarity=0.161 Sum_probs=48.0
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHH
Q 044791 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGV 423 (623)
Q Consensus 358 ~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~ 423 (623)
+.-++.+-++.+....+.|+.....+.+.||.+.+++..|.++|+.++.+.|-. ..+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHHH
Confidence 344566666677777788999999999999999999999999998888664433 4457776643
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=78.88 E-value=6.7 Score=35.54 Aligned_cols=111 Identities=5% Similarity=0.004 Sum_probs=60.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhc-----CCh-------HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCH-HHHH
Q 044791 317 KVIEMYGKCGSMTDARRVFDHMAD-----RSM-------DSWHLMINGYADNGLGDEGLQLFEQMRKLG-LQPNE-QTFL 382 (623)
Q Consensus 317 ~Li~~y~k~g~~~~A~~lf~~m~~-----~~~-------~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g-~~Pd~-~ty~ 382 (623)
.-+..+...|.++.|+-+.+.+.. +++ .++..+.+++...|+|..|...|++.+... .-+.. .++.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 346667777888888877776542 232 156667777888888888888888765321 11111 1111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC
Q 044791 383 AVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP 442 (623)
Q Consensus 383 ~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~ 442 (623)
++-. ...... ......+.+.---+..+|.+.|++++|+.+++. +.
T Consensus 105 ~~~~----~ss~p~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~-Ip 149 (167)
T 3ffl_A 105 STGN----SASTPQ----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG-IP 149 (167)
T ss_dssp --------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT-SC
T ss_pred cccc----cCCCcc----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhc-CC
Confidence 1100 000000 001112223333467788899999999999998 65
No 251
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=77.83 E-value=0.00084 Score=71.35 Aligned_cols=178 Identities=12% Similarity=0.100 Sum_probs=129.4
Q ss_pred CHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 044791 261 KVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD 340 (623)
Q Consensus 261 ~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~ 340 (623)
++++|.++-++--.| ..|..|.++..+.+.+.+|++.|= +. -|...|..+|.+..+.|.+++-++.+...++
T Consensus 40 ~ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 40 NLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp CSTTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred ccHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 344444443333333 368889999999999888887762 22 2455688899999999999999888865543
Q ss_pred --CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchh
Q 044791 341 --RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYL 418 (623)
Q Consensus 341 --~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~ 418 (623)
++...=+.||.+|++.++..+-.+++ -.|+..-...+.+-|...|.++.|.-+|..+- -|.
T Consensus 112 ~~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is----------N~a 174 (624)
T 3lvg_A 112 KARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFG 174 (624)
T ss_dssp TCCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC----------CCT
T ss_pred HhcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc----------cHH
Confidence 34456678999999999976654443 24777777888999999999988887775443 355
Q ss_pred hHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHH
Q 044791 419 GLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLED 467 (623)
Q Consensus 419 ~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~ 467 (623)
.|...+++.|++..|.+.-++ -.+..||.-+-.+|...+.+..|.
T Consensus 175 kLAstLV~L~~yq~AVdaArK----Ans~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 175 RLASTLVHLGEYQAAVDGARK----ANSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp TTSSSSSSCSGGGSSTTTTTT----CCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHh----cCChhHHHHHHHHHhCchHHHHHH
Confidence 666777888888888766665 346678888888999999887763
No 252
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=77.59 E-value=9.8 Score=44.13 Aligned_cols=179 Identities=10% Similarity=-0.064 Sum_probs=82.2
Q ss_pred HHHcCCHHHHHHHHHcCCC----CCHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------CCCHHHHHHHHHHH
Q 044791 256 LCQEGKVKEAIELMDKGVK----ADASC--FYTLFELCGNPKWYENAKKVHDYFLQSTI-------RGDLVLNNKVIEMY 322 (623)
Q Consensus 256 ~~~~g~~~~A~~l~~~~~~----pd~~t--y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~-------~pd~~~y~~Li~~y 322 (623)
....|+.++++.++++-+. .+..+ =..+.-+....|..+++.+++...+...- .+.+..-.+|.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4456666777777765332 22222 12222234444544566766665554311 01122223333333
Q ss_pred HHcCC-HHHHHHHHHHhhc-CChH-H-HHHHHHH--HHHcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCH
Q 044791 323 GKCGS-MTDARRVFDHMAD-RSMD-S-WHLMING--YADNGLGDEGLQLFEQMRKLGLQPNEQTF--LAVFSACGSADAI 394 (623)
Q Consensus 323 ~k~g~-~~~A~~lf~~m~~-~~~~-t-yn~Li~~--~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty--~~li~a~~~~g~~ 394 (623)
+-.|. -+++.+.+..+.. .+.+ . ..++.-| ++-.|+-+....++..+.+.. +.... ..+.-++...|+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCG
T ss_pred HhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCCh
Confidence 33332 2344555554443 3322 1 2222222 334455555566666655531 22222 2233334466777
Q ss_pred HHHHHHHHHHHhhcCCCCCccchh--hHHHHHHhcCCHHHHHHHHHh
Q 044791 395 EEAFIHFESMKSEFGISPGTEHYL--GLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 395 e~A~~l~~~m~~~~g~~p~~~ty~--~Li~~~~k~g~~e~A~~lf~~ 439 (623)
+.+..+++.+... ..|....-. ++.-+|+..|+.....+++..
T Consensus 541 e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~ 585 (963)
T 4ady_A 541 ELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHV 585 (963)
T ss_dssp GGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 7777777776642 222222111 233456667777666667766
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.42 E-value=64 Score=32.59 Aligned_cols=114 Identities=16% Similarity=0.145 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHH
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQL----FEQMRKLGLQPNEQTFLAVFSAC 388 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l----~~eM~~~g~~Pd~~ty~~li~a~ 388 (623)
.+|-++..=|.+.+++++|++++-.-. ..+.+.|+...|.++ ++-..+.++++|..+...|+..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~GA-----------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILASVS-----------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH-----------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHH-----------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 456677788888999999998865432 335556665554443 35555677888887777777777
Q ss_pred HhcCCHH-HHHHHHHHHHh---hcCCC--CCccchhhHHHHHHhcCCHHHHHHHH
Q 044791 389 GSADAIE-EAFIHFESMKS---EFGIS--PGTEHYLGLVGVLGKCGHLFEAQQFI 437 (623)
Q Consensus 389 ~~~g~~e-~A~~l~~~m~~---~~g~~--p~~~ty~~Li~~~~k~g~~e~A~~lf 437 (623)
.....-+ .-..+.+++++ ++|-. -|......+...|.+.+++.+|+..|
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6654311 11223333331 12322 24555566778888888888887776
No 254
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=76.40 E-value=6.7 Score=39.67 Aligned_cols=208 Identities=12% Similarity=0.069 Sum_probs=109.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHcCCCCCHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 044791 250 VADLARLCQEGKVKEAIELMDKGVKADAS---CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG 326 (623)
Q Consensus 250 ~~li~~~~~~g~~~~A~~l~~~~~~pd~~---ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g 326 (623)
.+.|...+..|+.+.+..+++.|..++.. -++. |...+..|+.+-+ +.+++.|...+...-.+.+...+..|
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~-L~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A~~~g 95 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTA-LHLACKFGCVDTA----KYLASVGEVHSLWHGQKPIHLAVMAN 95 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHHCCHHHH----HHHHHHCCCCCCBTTBCHHHHHHHTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcH-HHHHHHcCCHHHH----HHHHHCCCCccccCCCCHHHHHHHcC
Confidence 36677778899999999999887766542 2233 3444455666544 44445555444322234455566788
Q ss_pred CHHHHHHHHHHhhcC--ChH----------------------HHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCHHH
Q 044791 327 SMTDARRVFDHMADR--SMD----------------------SWHLMINGYADNG--LGDEGLQLFEQMRKLGLQPNEQT 380 (623)
Q Consensus 327 ~~~~A~~lf~~m~~~--~~~----------------------tyn~Li~~~~~~g--~~eeA~~l~~eM~~~g~~Pd~~t 380 (623)
+.+-+..+++..... ++. -++.| ...+..| ..+ +++.+++.|..++...
T Consensus 96 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L-~~A~~~g~~~~~----~v~~Ll~~ga~~~~~d 170 (364)
T 3ljn_A 96 KTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTAL-HWCVGLGPEYLE----MIKILVQLGASPTAKD 170 (364)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHH-HHHHHSCGGGHH----HHHHHHHHTCCTTCCC
T ss_pred CHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHH-HHHHHcCCchHH----HHHHHHHcCCCCcccC
Confidence 988888888763321 111 12333 3345556 443 3333444466554321
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC---ccchhhHHHHHHhcCCHHHHHHHHHhhCCCCC---CHHHHHH
Q 044791 381 --FLAVFSACGSADAIEEAFIHFESMKSEFGISPG---TEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEP---TAEFWEA 452 (623)
Q Consensus 381 --y~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~---~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~P---d~~ty~~ 452 (623)
-.+.+...+..|..+-+..+++.-....++.++ ..-. +.+...+..|..+-+.-+++. +..+ |..-++.
T Consensus 171 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~--gad~~~~d~~g~tp 247 (364)
T 3ljn_A 171 KADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN-SHLHWAILINWEDVAMRFVEM--GIDVNMEDNEHTVP 247 (364)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC-CTTHHHHTTTCHHHHHHHHTT--TCCTTCCCTTSCCH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC-cHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCH
Confidence 123344455678877666666543211111132 2223 345556677888777766665 2222 2222223
Q ss_pred HHHHHHHcCChhHHHHHHH
Q 044791 453 LRNYARIHGDIDLEDHAEE 471 (623)
Q Consensus 453 Li~a~~~~g~~~~A~~~~~ 471 (623)
| ...+..|+.+.+..+++
T Consensus 248 L-~~A~~~g~~~~v~~Ll~ 265 (364)
T 3ljn_A 248 L-YLSVRAAMVLLTKELLQ 265 (364)
T ss_dssp H-HHHHHTCCHHHHHHHHH
T ss_pred H-HHHHHhChHHHHHHHHH
Confidence 3 33345677764444443
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.99 E-value=6.3 Score=41.60 Aligned_cols=96 Identities=11% Similarity=0.003 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhhcC------ChHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCHHHHH-
Q 044791 313 VLNNKVIEMYGKCGSMTDARRVFDHMADR------SMDSWHLMINGYADNGLGDEGLQLFEQMRKL---GLQPNEQTFL- 382 (623)
Q Consensus 313 ~~y~~Li~~y~k~g~~~~A~~lf~~m~~~------~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~---g~~Pd~~ty~- 382 (623)
.++..+...|.+.|++++|.++|.++... -+..|-.+|..+...+++..|...+.+.... +-.++...-.
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 35677899999999999999999988752 2337888888899999999999998887642 3333332111
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHhhc
Q 044791 383 -AVFSACGSADAIEEAFIHFESMKSEF 408 (623)
Q Consensus 383 -~li~a~~~~g~~e~A~~l~~~m~~~~ 408 (623)
.-+..+...+++..|...|-++...+
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhccC
Confidence 11222445789999998888877653
No 256
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=73.08 E-value=24 Score=31.50 Aligned_cols=48 Identities=8% Similarity=-0.030 Sum_probs=31.4
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 357 GLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 357 g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
++.++|.++|+.+++.+-.. ...|.....-=.+.|++..|.+++...+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 67777777777776553333 4444444444556788888888887776
No 257
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=71.82 E-value=14 Score=32.16 Aligned_cols=62 Identities=19% Similarity=0.191 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHH
Q 044791 359 GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVG 422 (623)
Q Consensus 359 ~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~ 422 (623)
.-+..+-++.+....+.|+.....+.+.+|.+.+++-.|.++|+.++.+.|- ...+|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~--~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC--chhhHHHHHH
Confidence 3445556666667778899999999999999999999999999988865433 3556777664
No 258
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.23 E-value=20 Score=37.69 Aligned_cols=92 Identities=9% Similarity=-0.028 Sum_probs=69.8
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc-----CChH------H
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQS--TIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD-----RSMD------S 345 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~--g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~-----~~~~------t 345 (623)
++..+..-|.+.|++++|.++|.++... +..--...+-.+|.++...+++..|...++++.. .+.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5777889999999999999999999875 2222367788889999999999999999988753 2222 2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
|..++ +...++|.+|...|-++...
T Consensus 213 ~~gl~--~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIH--CLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHG--GGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHhChHHHHHHHHHHHhcc
Confidence 33332 44578999999999887654
No 259
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=69.24 E-value=59 Score=28.55 Aligned_cols=134 Identities=11% Similarity=0.013 Sum_probs=77.3
Q ss_pred HHcCCHHHHHHHHHHhhc-CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044791 323 GKCGSMTDARRVFDHMAD-RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHF 401 (623)
Q Consensus 323 ~k~g~~~~A~~lf~~m~~-~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~ 401 (623)
.-.|.+++..++..+... .+..-||-+|.-....-+-+-..++++..-+ -.|. ...|++......+
T Consensus 18 ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKrVi~C~ 84 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKSVVECG 84 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHHHHHHH
Confidence 345777777777776654 3455677777777666666555555554422 1111 1234444444443
Q ss_pred HHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 402 ESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-FEPTAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 402 ~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
-.+- -+......-++.+...|+-|.-.+++.+.+. ..|+....-.+..||.+.|+..+|.+++...-+
T Consensus 85 ~~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 85 VINN------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhc------chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3221 1334445556677777777777777777322 455666667777777777777766665555544
No 260
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=67.93 E-value=4.5 Score=37.67 Aligned_cols=201 Identities=13% Similarity=0.109 Sum_probs=100.7
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCC
Q 044791 253 LARLCQEGKVKEAIELMDKGVKADASC--FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLV---LNNKVIEMYGKCGS 327 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~~~pd~~t--y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~---~y~~Li~~y~k~g~ 327 (623)
|...++.|+++....+++.|..++... -.+.+...+..|+++-+. .+++.|...+.. .-.+.+...+..|+
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~ 88 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVK----YYISKGAIVDQLGGDLNSTPLHWATRQGH 88 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred HHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHH----HHHHcCCcchhhcCCcCCChhHHHHHcCC
Confidence 455678999999988888876654321 223455556667765444 444454433211 11234555666788
Q ss_pred HHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHH
Q 044791 328 MTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE---QTFLAVFSACGSADAIEEAFIHF 401 (623)
Q Consensus 328 ~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~---~ty~~li~a~~~~g~~e~A~~l~ 401 (623)
.+-+..+++.-... +...++.| ...+..|..+ +++.+.+.|..++. .-.+.+..++...+. .+..+++
T Consensus 89 ~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~----~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~-~~~~~~L 162 (240)
T 3eu9_A 89 LSMVVQLMKYGADPSLIDGEGCSCI-HLAAQFGHTS----IVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHS-VDPTRLL 162 (240)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCS-STTHHHH
T ss_pred HHHHHHHHHcCCCCcccCCCCCCHH-HHHHHcCHHH----HHHHHHhcCCCccccCCCCCcHHHHHHHhCCh-HHHHHHH
Confidence 77766666542221 22222333 3345556654 44444556655532 222334444433332 2233333
Q ss_pred HHHHhhcCCCCCcc---chhhHHHHHHhcCCHHHHHHHHHhhCCCC-CCHHHHHHHHHHHHHcCChhHHHH
Q 044791 402 ESMKSEFGISPGTE---HYLGLVGVLGKCGHLFEAQQFIEQKLPFE-PTAEFWEALRNYARIHGDIDLEDH 468 (623)
Q Consensus 402 ~~m~~~~g~~p~~~---ty~~Li~~~~k~g~~e~A~~lf~~~m~~~-Pd~~ty~~Li~a~~~~g~~~~A~~ 468 (623)
.+ .|..++.. .-.+.+...+..|..+-+.-+++....+. .|..-. +-+...+..|+.+.+..
T Consensus 163 ---~~-~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~ 228 (240)
T 3eu9_A 163 ---LT-FNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINH 228 (240)
T ss_dssp ---HH-TTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHH
T ss_pred ---Hh-cCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHH
Confidence 22 25554432 22355667778888887777777621111 111111 23344456777753333
No 261
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=66.33 E-value=14 Score=38.25 Aligned_cols=175 Identities=13% Similarity=0.125 Sum_probs=84.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcC
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADASC--FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLV--LNNKVIEMYGKCG 326 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~t--y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--~y~~Li~~y~k~g 326 (623)
+.+...++.|+.+-+..+++.|..++... -.+.+...+..|+.+-+. .+++.|..++.. .-.+.+...++.|
T Consensus 49 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~----~Ll~~ga~~~~~~~~g~t~L~~A~~~g 124 (437)
T 1n11_A 49 TPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVK----LLLENNANPNLATTAGHTPLHIAAREG 124 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHH----HHHHHTCCTTCCCTTCCCHHHHHHHHT
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHH----HHHhCCCCCCCCCCCCCcHHHHHHHcC
Confidence 44666678899888888887766543211 112333444556665443 344445443321 1123344556778
Q ss_pred CHHHHHHHHHHhhcCC---hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHH
Q 044791 327 SMTDARRVFDHMADRS---MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQT--FLAVFSACGSADAIEEAFIHF 401 (623)
Q Consensus 327 ~~~~A~~lf~~m~~~~---~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~t--y~~li~a~~~~g~~e~A~~l~ 401 (623)
+.+-+..+++.-...+ ...++ .+...+..|+.+- ++.+.+.|..++... -.+.+...+..|+.+-+.
T Consensus 125 ~~~~v~~Ll~~~~~~~~~~~~g~t-~L~~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~--- 196 (437)
T 1n11_A 125 HVETVLALLEKEASQACMTKKGFT-PLHVAAKYGKVRV----AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK--- 196 (437)
T ss_dssp CHHHHHHHHHTTCCSCCCCTTSCC-HHHHHHHTTCHHH----HHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHH---
T ss_pred CHHHHHHHHhCCCCCcCCCCCCCC-HHHHHHHcCCHHH----HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH---
Confidence 8887777776533221 11122 2333455666543 333444555443211 112233344556654333
Q ss_pred HHHHhhcCCCCCccc--hhhHHHHHHhcCCHHHHHHHHHh
Q 044791 402 ESMKSEFGISPGTEH--YLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 402 ~~m~~~~g~~p~~~t--y~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
.+... |..++... -.+.+...+..|+.+-+..+++.
T Consensus 197 -~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 234 (437)
T 1n11_A 197 -LLLPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQY 234 (437)
T ss_dssp -HHGGG-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred -HHHhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 33322 44443221 12334455566777666666654
No 262
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=66.21 E-value=51 Score=28.55 Aligned_cols=63 Identities=5% Similarity=-0.035 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHhhcCCh----HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 044791 309 RGDLVLNNKVIEMYGKCGSM---TDARRVFDHMADRSM----DSWHLMINGYADNGLGDEGLQLFEQMRK 371 (623)
Q Consensus 309 ~pd~~~y~~Li~~y~k~g~~---~~A~~lf~~m~~~~~----~tyn~Li~~~~~~g~~eeA~~l~~eM~~ 371 (623)
.|+..+--.+.-++.+.... .+++.+++++.+.+. ..+-.|.-|+.+.|++++|.+..+.+++
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 44555555555566665443 356666665543222 2455556666677777777776666665
No 263
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=65.30 E-value=36 Score=29.20 Aligned_cols=62 Identities=11% Similarity=0.150 Sum_probs=37.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCh---HHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCC
Q 044791 315 NNKVIEMYGKCGSMTDARRVFDHMADRSM---DSWHLMINGYADNGL--GDEGLQLFEQMRKLGLQP 376 (623)
Q Consensus 315 y~~Li~~y~k~g~~~~A~~lf~~m~~~~~---~tyn~Li~~~~~~g~--~eeA~~l~~eM~~~g~~P 376 (623)
...++.-|...|+.++|.+.++++..+.. +.+.++..++-+.++ .+.+..++..+...|+-.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 45567777777777777777777765422 244445555554432 345666777776665543
No 264
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=65.13 E-value=1.7e+02 Score=32.21 Aligned_cols=113 Identities=12% Similarity=0.053 Sum_probs=68.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHH
Q 044791 358 LGDEGLQLFEQMRKLGLQPNEQTFLAVFS----ACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEA 433 (623)
Q Consensus 358 ~~eeA~~l~~eM~~~g~~Pd~~ty~~li~----a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A 433 (623)
+.+.|..+|......+ ..+......+-. .+...+...++...+...... . .+.....-.+....+.|+++.|
T Consensus 229 d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-S--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp CHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-C--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred CHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc-C--CChHHHHHHHHHHHHCCCHHHH
Confidence 6789999998887544 224333322322 333345345666666655432 2 2322233444445577999999
Q ss_pred HHHHHhhCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 434 QQFIEQKLPFEP--TAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 434 ~~lf~~~m~~~P--d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
...|+. |...+ .....--+.+++...|+.++|..+++.+..
T Consensus 305 ~~~~~~-l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLAR-LPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHH-SCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHH-ccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999 76332 233334456677889999999888887654
No 265
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=64.88 E-value=77 Score=35.24 Aligned_cols=100 Identities=10% Similarity=-0.097 Sum_probs=54.2
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHHH
Q 044791 254 ARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGK---CGSMTD 330 (623)
Q Consensus 254 ~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k---~g~~~~ 330 (623)
.++.-.|.++.|++++-+....|.+.+.+.+.-+.-.+- ...++.. ..+ .| ..-+..||..|++ ..+..+
T Consensus 302 ~vLlLtgqFE~AI~~L~~~~~vdAVH~AIaL~~~gLL~~---~~~lls~--~~~-~~-~lN~arLI~~Yt~~F~~td~~~ 374 (661)
T 2qx5_A 302 QTLLLSGLYGLAIDYTYTFSEMDAVHLAIGLASLKLFKI---DSSTRLT--KKP-KR-DIRFANILANYTKSFRYSDPRV 374 (661)
T ss_dssp HHHHHTTCHHHHHHHHHTTCHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHhhHHHHHHHHHhcCchhHHHHHHHHHHcCCccC---CCccccc--CCC-cc-cccHHHHHHHHHHHhhcCCHHH
Confidence 345567899999998876655566666666665544432 1111111 001 11 2336778888886 478899
Q ss_pred HHHHHHHhhcCC-h----HHHHHHHHHHHHcCChH
Q 044791 331 ARRVFDHMADRS-M----DSWHLMINGYADNGLGD 360 (623)
Q Consensus 331 A~~lf~~m~~~~-~----~tyn~Li~~~~~~g~~e 360 (623)
|+..|--+...+ . ..+.++-......++++
T Consensus 375 Al~Y~~li~l~~g~~~~~~~~~~l~eLvletr~f~ 409 (661)
T 2qx5_A 375 AVEYLVLITLNEGPTDVELCHEALRELVLETKEFT 409 (661)
T ss_dssp HHHHHHGGGGSCCHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHHhcccHH
Confidence 999887775444 1 23444444455555544
No 266
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.87 E-value=13 Score=35.50 Aligned_cols=211 Identities=13% Similarity=-0.016 Sum_probs=110.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHc
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADA---SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVL--NNKVIEMYGKC 325 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~---~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~--y~~Li~~y~k~ 325 (623)
+.+...+..|+.+-+..+++.|..++. .-.+. +...+..|+.+ +++.+++.|..++... -.+.+...++.
T Consensus 41 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 115 (285)
T 1wdy_A 41 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATP-FLLAAIAGSVK----LLKLFLSKGADVNECDFYGFTAFMEAAVY 115 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH-HHHHHHHTCHH----HHHHHHHTTCCTTCBCTTCCBHHHHHHHT
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH-HHHHHHcCCHH----HHHHHHHcCCCCCccCcccCCHHHHHHHh
Confidence 456667788888888888887766543 22223 33334455554 4444555565443211 12344556677
Q ss_pred CCHHHHHHHHHHhhcCChH-------------HHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHH
Q 044791 326 GSMTDARRVFDHMADRSMD-------------SWHLMINGYADNGLGDEGLQLFEQMRKL-GLQPNE---QTFLAVFSAC 388 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~~~~-------------tyn~Li~~~~~~g~~eeA~~l~~eM~~~-g~~Pd~---~ty~~li~a~ 388 (623)
|+.+-+..+++.-...+.. .. +.+...+..|..+-+..+ .+. |..++. .-.+.+..+
T Consensus 116 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~-t~L~~A~~~~~~~~v~~L----l~~~~~~~~~~~~~g~t~l~~a- 189 (285)
T 1wdy_A 116 GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA-TALMDAAEKGHVEVLKIL----LDEMGADVNACDNMGRNALIHA- 189 (285)
T ss_dssp TCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCC-CHHHHHHHHTCHHHHHHH----HHTSCCCTTCCCTTSCCHHHHH-
T ss_pred CCHHHHHHHHHhCCCcccccccHHHHHhhccCCC-cHHHHHHHcCCHHHHHHH----HHhcCCCCCccCCCCCCHHHHH-
Confidence 8887777666653322211 11 233444556665544443 333 544432 222333333
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCCCCccc--hhhHHHHHHhcCCHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCCh
Q 044791 389 GSADAIEEAFIHFESMKSEFGISPGTEH--YLGLVGVLGKCGHLFEAQQFIEQKLPFEPT---AEFWEALRNYARIHGDI 463 (623)
Q Consensus 389 ~~~g~~e~A~~l~~~m~~~~g~~p~~~t--y~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd---~~ty~~Li~a~~~~g~~ 463 (623)
+..|..+...++++.+.+. |..++... -.+.+...++.|..+-+..+++. .+..++ ..-.+ .+...+..|+.
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~g~~~~~~~~~g~t-~l~~A~~~~~~ 266 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDH-GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ-EHIEINDTDSDGKT-ALLLAVELKLK 266 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHT-TCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS-SSCCTTCCCTTSCC-HHHHHHHTTCH
T ss_pred HHccccchHHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-cCCCccccCCCCCc-HHHHHHHcCcH
Confidence 4455544445566666644 76665432 33556677788999988888885 332222 22222 23334456776
Q ss_pred hHHHHHHHHHHhcCCC
Q 044791 464 DLEDHAEELMVDLDPS 479 (623)
Q Consensus 464 ~~A~~~~~~~~~m~~~ 479 (623)
+ +.+.+.+.+.+
T Consensus 267 ~----i~~~Ll~~Ga~ 278 (285)
T 1wdy_A 267 K----IAELLCKRGAS 278 (285)
T ss_dssp H----HHHHHHHHSSC
T ss_pred H----HHHHHHHcCCC
Confidence 4 55555555443
No 267
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=64.29 E-value=38 Score=28.01 Aligned_cols=48 Identities=6% Similarity=0.059 Sum_probs=31.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhh
Q 044791 292 WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMA 339 (623)
Q Consensus 292 ~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~ 339 (623)
+.-++.+-++.+....+.|+..+..+.+.+|-|.+++.-|+++|+.++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344555555566566666777777777777777777777777777665
No 268
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=63.74 E-value=29 Score=30.11 Aligned_cols=71 Identities=13% Similarity=-0.012 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 044791 375 QPNEQTFLAVFSACGSADA---IEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT 446 (623)
Q Consensus 375 ~Pd~~ty~~li~a~~~~g~---~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd 446 (623)
.|+..|--.+..++.+... ..+++.+++++.+. +-.-.....--|.-++.|.|++++|.++.+..+.++|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 4455444444455555443 34566666666643 21111222334455666666777766666665556664
No 269
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=62.88 E-value=36 Score=28.08 Aligned_cols=77 Identities=12% Similarity=0.155 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 293 YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 293 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
-++|..+-+-+...|. ...+--+-+..+...|++++|..+.+.+.-+|++.|-+|-. .+.|..+++..-+.+|...
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4455555544444332 11221222334455666666666666666666666655533 3455555555555555444
Q ss_pred C
Q 044791 373 G 373 (623)
Q Consensus 373 g 373 (623)
|
T Consensus 99 g 99 (116)
T 2p58_C 99 Q 99 (116)
T ss_dssp C
T ss_pred C
Confidence 3
No 270
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=62.40 E-value=9.4 Score=39.66 Aligned_cols=174 Identities=13% Similarity=0.138 Sum_probs=97.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcC
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADASC--FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDL--VLNNKVIEMYGKCG 326 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~t--y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~--~~y~~Li~~y~k~g 326 (623)
+.+...+..|+++-+..+++.|..++... ..+.+...+..|+.+-+..++ +.|...+. ..-.+.+...++.|
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll----~~g~~~~~~~~~g~t~L~~A~~~g 91 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL----QNKAKVNAKAKDDQTPLHCAARIG 91 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH----HHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCCCHHHHHHHCC
Confidence 45667788999999999999887765421 223444455667766555444 44443321 11123455667788
Q ss_pred CHHHHHHHHHHhhcCCh---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 044791 327 SMTDARRVFDHMADRSM---DSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN---EQTFLAVFSACGSADAIEEAFIH 400 (623)
Q Consensus 327 ~~~~A~~lf~~m~~~~~---~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd---~~ty~~li~a~~~~g~~e~A~~l 400 (623)
+.+-+.-+++.-...+. ..++.| ...++.|..+-+..++ +.|...+ ...+ +.+...+..|+++-+..+
T Consensus 92 ~~~~v~~Ll~~ga~~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll----~~~~~~~~~~~~g~-t~L~~A~~~g~~~~v~~L 165 (437)
T 1n11_A 92 HTNMVKLLLENNANPNLATTAGHTPL-HIAAREGHVETVLALL----EKEASQACMTKKGF-TPLHVAAKYGKVRVAELL 165 (437)
T ss_dssp CHHHHHHHHHHTCCTTCCCTTCCCHH-HHHHHHTCHHHHHHHH----HTTCCSCCCCTTSC-CHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCcHH-HHHHHcCCHHHHHHHH----hCCCCCcCCCCCCC-CHHHHHHHcCCHHHHHHH
Confidence 88877777765433222 223333 3345667766555554 3443322 1112 234455667887655554
Q ss_pred HHHHHhhcCCCCCcc--chhhHHHHHHhcCCHHHHHHHHHh
Q 044791 401 FESMKSEFGISPGTE--HYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 401 ~~~m~~~~g~~p~~~--ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
++ . |..++.. .-.+.+...+..|+.+-+..+++.
T Consensus 166 l~----~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 201 (437)
T 1n11_A 166 LE----R-DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR 201 (437)
T ss_dssp HH----T-TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG
T ss_pred Hh----C-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 43 2 5555432 223456666778888877766665
No 271
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=61.77 E-value=51 Score=28.97 Aligned_cols=71 Identities=13% Similarity=-0.012 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCC
Q 044791 375 QPNEQTFLAVFSACGSADA---IEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPT 446 (623)
Q Consensus 375 ~Pd~~ty~~li~a~~~~g~---~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd 446 (623)
.++..|--.+..++.+... ..+++.+++++.+. +-.-.....--|.-++.|.|++++|.++.+..+.++|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 3454444444445555443 34555666665543 11111112223344555566666666655554445553
No 272
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=60.38 E-value=44 Score=30.60 Aligned_cols=110 Identities=14% Similarity=0.061 Sum_probs=53.7
Q ss_pred HHHHHHcCCHHHHHHHHHHhhc----CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhc
Q 044791 319 IEMYGKCGSMTDARRVFDHMAD----RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNE---QTFLAVFSACGSA 391 (623)
Q Consensus 319 i~~y~k~g~~~~A~~lf~~m~~----~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~---~ty~~li~a~~~~ 391 (623)
+...++.|+++....+++.-.. .+...++.|.. .+..|+.+ +++.+.+.|..++. ..++ .+...+..
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~ 83 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHW-ACSAGHTE----IVEFLLQLGVPVNDKDDAGWS-PLHIAASA 83 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHH-HHHHTCHH----HHHHHHHTTCCSCCCCTTSCC-HHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHH-HHHcCcHH----HHHHHHHhCCCCCCcCCCCCC-HHHHHHHc
Confidence 5556667777777777765321 22223333333 34455543 33344455554432 1222 23333455
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCccc--hhhHHHHHHhcCCHHHHHHHHHh
Q 044791 392 DAIEEAFIHFESMKSEFGISPGTEH--YLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 392 g~~e~A~~l~~~m~~~~g~~p~~~t--y~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
|+.+-+..++ +. |..++... -.+.+...+..|+.+-+..+++.
T Consensus 84 ~~~~~v~~Ll----~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~ 128 (231)
T 3aji_A 84 GXDEIVKALL----VK-GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128 (231)
T ss_dssp TCHHHHHHHH----HT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHH----Hc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 6665443333 22 54443221 22345555667777777766665
No 273
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=60.20 E-value=45 Score=38.67 Aligned_cols=215 Identities=7% Similarity=-0.123 Sum_probs=112.5
Q ss_pred HHHHHHHcCCHHHHHHHHHcC------CCCC-----HHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCCCCHHH--HH-
Q 044791 252 DLARLCQEGKVKEAIELMDKG------VKAD-----ASCFYTLFELCGNPKW-YENAKKVHDYFLQSTIRGDLVL--NN- 316 (623)
Q Consensus 252 li~~~~~~g~~~~A~~l~~~~------~~pd-----~~ty~~Ll~~~~~~g~-~~~A~~l~~~m~~~g~~pd~~~--y~- 316 (623)
+.-+....|..+++++++..- +.-+ ...-.+|.-+++-.|. -+++.+.+..++... +..+ ..
T Consensus 417 laLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd---~~~~~~~Aa 493 (963)
T 4ady_A 417 YGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND---SATSGEAAA 493 (963)
T ss_dssp HHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC---CHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC---CHHHHHHHH
Confidence 334556667667788776431 1111 1112223223333332 245666666666532 2211 22
Q ss_pred -HHHHHHHHcCCHHHHHHHHHHhhcC-ChH--HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHH
Q 044791 317 -KVIEMYGKCGSMTDARRVFDHMADR-SMD--SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFL---AVFSACG 389 (623)
Q Consensus 317 -~Li~~y~k~g~~~~A~~lf~~m~~~-~~~--tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~---~li~a~~ 389 (623)
+|...|+-.|+-+....++..+.+. +.. -.-++.-|+...|+.+.+..+.+.+... -.| ..-|. ++..+|+
T Consensus 494 lALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp-~vRygaa~alglAya 571 (963)
T 4ady_A 494 LGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-DES-LLRYGGAFTIALAYA 571 (963)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCH-HHHHHHHHHHHHHTT
T ss_pred HHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCH-HHHHHHHHHHHHHhc
Confidence 2334455667777777777765432 222 3334444556789999999998888864 122 23333 3455778
Q ss_pred hcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCh-hHHH
Q 044791 390 SADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLP-FEPTAEFWEALRNYARIHGDI-DLED 467 (623)
Q Consensus 390 ~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~-~~Pd~~ty~~Li~a~~~~g~~-~~A~ 467 (623)
..|+.....+++..+... ...++.-...+.-++.-.|+.+.+.++++..+. ..|.+..-..+.-|....|.. ..+.
T Consensus 572 GTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~ai 649 (963)
T 4ady_A 572 GTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAI 649 (963)
T ss_dssp TSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred CCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHH
Confidence 889988877799888753 222333333344455556776667777765232 233333223333344444443 3333
Q ss_pred HHHHHH
Q 044791 468 HAEELM 473 (623)
Q Consensus 468 ~~~~~~ 473 (623)
.++..+
T Consensus 650 d~L~~L 655 (963)
T 4ady_A 650 DVLDPL 655 (963)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 274
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=60.17 E-value=98 Score=27.90 Aligned_cols=142 Identities=11% Similarity=0.021 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS 390 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~ 390 (623)
|..+-...+.++++.|..+..-.+.+.+...+...-...+.++.+.|. .++...+.++.. .+|...-...+.++++
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---~~~~~vr~~a~~aL~~ 107 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD-ERAVEPLIKALK---DEDGWVRQSAAVALGQ 107 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC-GGGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-HHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 333333344444444442222223333333343333344444444443 223333333332 2344444444455555
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCh
Q 044791 391 ADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDI 463 (623)
Q Consensus 391 ~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~ 463 (623)
.|+.+ +...+..+.. .++..+-...+.++.+.|..+ +...+...+. .++...-...+.++...|..
T Consensus 108 ~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~-d~~~~vr~~a~~aL~~~~~~ 173 (211)
T 3ltm_A 108 IGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK-DEDGWVRQSAADALGEIGGE 173 (211)
T ss_dssp HCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT-CSSHHHHHHHHHHHHHHCSH
T ss_pred hCcHH-HHHHHHHHHh----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc-CCCHHHHHHHHHHHHHhCch
Confidence 44422 2222222221 233333344445555554432 2233333233 44544444555555555553
No 275
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=60.09 E-value=34 Score=28.16 Aligned_cols=77 Identities=13% Similarity=0.096 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 044791 293 YENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKL 372 (623)
Q Consensus 293 ~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~ 372 (623)
-++|..+-+-+...|. ...+--+-+..+...|++++|..+.+.+.-+|++.|-+|-. .+.|..+++..-+.+|...
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4555555554444432 12222222334455666666666666666666666655533 3556666666555555554
Q ss_pred C
Q 044791 373 G 373 (623)
Q Consensus 373 g 373 (623)
|
T Consensus 98 g 98 (115)
T 2uwj_G 98 S 98 (115)
T ss_dssp S
T ss_pred C
Confidence 3
No 276
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=60.01 E-value=37 Score=33.23 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=42.1
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcC
Q 044791 285 ELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADR 341 (623)
Q Consensus 285 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~ 341 (623)
..+.+.|++++|++....-++.. +-|...-..|+..+|-.|++++|.+-++...+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 45567788888888887777764 447777778888888888888888877766543
No 277
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=59.93 E-value=53 Score=29.61 Aligned_cols=53 Identities=11% Similarity=-0.007 Sum_probs=26.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHc-----CCCCC-----H--HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 044791 251 ADLARLCQEGKVKEAIELMDK-----GVKAD-----A--SCFYTLFELCGNPKWYENAKKVHDYF 303 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~-----~~~pd-----~--~ty~~Ll~~~~~~g~~~~A~~l~~~m 303 (623)
.-+..+...|.++.|+-+.+. +..+| . .++..+.+++...|++..|...|++.
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 335555556666666544421 11122 1 23444555555566666666666554
No 278
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=59.28 E-value=74 Score=26.22 Aligned_cols=78 Identities=28% Similarity=0.207 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHhhcCCCCCccchhhHH--HHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 044791 392 DAIEEAFIHFESMKSEFGISPGTEHYLGLV--GVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHA 469 (623)
Q Consensus 392 g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li--~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~ 469 (623)
...++|.-+-+.+... +. .-..+|| ..+...|++++|..+.+. +. .||...|-+|-.. +.|-.+ ++
T Consensus 21 H~HqEA~tIAdwL~~~-~~----~E~v~lIR~sSLmNrG~Yq~Al~l~~~-~c-~pdlepw~ALce~--rlGl~s---~l 88 (116)
T 2p58_C 21 HYHEEANCIAEWLHLK-GE----EEAVQLIRLSSLMNRGDYASALQQGNK-LA-YPDLEPWLALCEY--RLGLGS---AL 88 (116)
T ss_dssp TCHHHHHHHHHHHHHT-TC----HHHHHHHHHHHHHHTTCHHHHHHHHTT-SC-CGGGHHHHHHHHH--HHTCHH---HH
T ss_pred hHHHHHHHHHHHHHhC-Cc----HHHHHHHHHHHHHcchhHHHHHHhcCC-CC-CchHHHHHHHHHH--hcccHH---HH
Confidence 3456666555555433 21 1122333 335667777777777777 55 6777777666544 445544 45
Q ss_pred HHHHHhcCCCCC
Q 044791 470 EELMVDLDPSKA 481 (623)
Q Consensus 470 ~~~~~~m~~~~~ 481 (623)
...+.++..++.
T Consensus 89 e~rL~~la~sg~ 100 (116)
T 2p58_C 89 ESRLNRLARSQD 100 (116)
T ss_dssp HHHHHHHTTCCC
T ss_pred HHHHHHHHhCCC
Confidence 555555554443
No 279
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=58.89 E-value=12 Score=36.67 Aligned_cols=58 Identities=19% Similarity=0.228 Sum_probs=35.4
Q ss_pred HHHHhcCCHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 422 GVLGKCGHLFEAQQFIEQKLPFEP-TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 422 ~~~~k~g~~e~A~~lf~~~m~~~P-d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
..+.+.|.+++|++.....++..| |...-..|+..+|-.|+++.|..-++.+.++++.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 345566666666666655444445 4455555666666677777666666666666554
No 280
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=58.84 E-value=32 Score=30.52 Aligned_cols=62 Identities=11% Similarity=0.174 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCChH---HHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCC
Q 044791 315 NNKVIEMYGKCGSMTDARRVFDHMADRSMD---SWHLMINGYADNGL--GDEGLQLFEQMRKLGLQP 376 (623)
Q Consensus 315 y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~---tyn~Li~~~~~~g~--~eeA~~l~~eM~~~g~~P 376 (623)
.+.+|.-|...|+.++|.+.++++..+... .+.++..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 455677777777777777777777654322 44445555554322 345666777776665543
No 281
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=57.41 E-value=99 Score=27.08 Aligned_cols=67 Identities=6% Similarity=-0.036 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHhhcCC----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 044791 309 RGDLVLNNKVIEMYGKCGS---MTDARRVFDHMADRS----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN 377 (623)
Q Consensus 309 ~pd~~~y~~Li~~y~k~g~---~~~A~~lf~~m~~~~----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd 377 (623)
.++..+--.+.-++.+... ..+++.+++++...+ ....-.|.-|+.+.|++++|.+..+.+++. .|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT--CCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCC
Confidence 4555555556666666554 335566666554321 124444556677777777777777777663 554
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=55.10 E-value=1e+02 Score=28.64 Aligned_cols=77 Identities=8% Similarity=0.185 Sum_probs=53.1
Q ss_pred CCCCCHHH---HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHH
Q 044791 272 GVKADASC---FYTLFELCGNPKWYENAKKVHDYFLQSTIRG-DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWH 347 (623)
Q Consensus 272 ~~~pd~~t---y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn 347 (623)
..+-|..- |-..++.| ..+...++.++|..|...|+.- -+.-|-.....+...|++.+|.+||+.-.+....-..
T Consensus 72 rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~ 150 (202)
T 3esl_A 72 TYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYN 150 (202)
T ss_dssp GGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred cccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 55667643 43444443 2445778999999998876643 3677888888888899999999999877766554443
Q ss_pred HH
Q 044791 348 LM 349 (623)
Q Consensus 348 ~L 349 (623)
-|
T Consensus 151 rL 152 (202)
T 3esl_A 151 RL 152 (202)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 283
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=54.11 E-value=16 Score=33.71 Aligned_cols=176 Identities=9% Similarity=0.024 Sum_probs=93.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHHH---HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHc
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADASC---FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLV--LNNKVIEMYGKC 325 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~t---y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--~y~~Li~~y~k~ 325 (623)
+.+...++.|+++-+..+++.|..++... -.+.+...+..|+.+- ++.+++.|..++.. .-.+.+...++.
T Consensus 44 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 119 (240)
T 3eu9_A 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSM----VVQLMKYGADPSLIDGEGCSCIHLAAQF 119 (240)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHH----HHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 45677788999998888888765543211 1123334444566554 44445556554421 112345556677
Q ss_pred CCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHH
Q 044791 326 GSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQT---FLAVFSACGSADAIEEAFI 399 (623)
Q Consensus 326 g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~t---y~~li~a~~~~g~~e~A~~ 399 (623)
|+.+-+..+++.-.. .+....+.|..+..+.+ ..+..++ +.+.|..++... -.+.+...+..|..+-+..
T Consensus 120 ~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~-~~~~~~~---L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 195 (240)
T 3eu9_A 120 GHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTH-SVDPTRL---LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL 195 (240)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCC-SSTTHHH---HHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCC-hHHHHHH---HHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHH
Confidence 888766666654222 22223344544444443 3333333 344555443321 1234555566788765544
Q ss_pred HHHHHHhhcCCCCCccch--hhHHHHHHhcCCHHHHHHHHHh
Q 044791 400 HFESMKSEFGISPGTEHY--LGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 400 l~~~m~~~~g~~p~~~ty--~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
+++ . |..++.... .+-+...++.|+.+-+.-+++.
T Consensus 196 Ll~----~-g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 196 LLE----A-GANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHH----H-TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HHH----c-CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 443 3 665553321 2456666778888877777766
No 284
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=53.79 E-value=16 Score=33.88 Aligned_cols=47 Identities=11% Similarity=0.007 Sum_probs=25.0
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCCCCcc---chhhHHHHHHhcCCHHHHHHHHHh
Q 044791 388 CGSADAIEEAFIHFESMKSEFGISPGTE---HYLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~~~~g~~p~~~---ty~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
.+..|..+-...+++ . |..++.. .-.+.+...++.|+.+-+..+++.
T Consensus 123 A~~~~~~~~~~~Ll~----~-g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 172 (241)
T 1k1a_A 123 AVNTECQETVQLLLE----R-GADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQH 172 (241)
T ss_dssp HHHHTCHHHHHHHHH----T-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHH----c-CCCcccccccCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 344555544433332 2 5544432 233455666677888777766665
No 285
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=52.02 E-value=1.3e+02 Score=26.95 Aligned_cols=48 Identities=10% Similarity=0.084 Sum_probs=18.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCC
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGL 358 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~ 358 (623)
|..+-...+.++.+.+..+....+.+.+...+...-...+.++.+.|.
T Consensus 63 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 110 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 110 (211)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 333333344444444432222222223333333333344444444443
No 286
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=50.40 E-value=1.4e+02 Score=26.62 Aligned_cols=80 Identities=10% Similarity=0.055 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 310 GDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG 389 (623)
Q Consensus 310 pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~ 389 (623)
++..+-...+.++.+.|+.+....+.+.+...+...-...+.++.+.|. .++...+.++.. .++...-...+.++.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~---d~~~~vr~~A~~aL~ 163 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD-ERAVEPLIKALK---DEDGWVRQSAADALG 163 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-GGGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 4555555555555555554333333333344444444444555555554 233333433332 234444445555555
Q ss_pred hcCC
Q 044791 390 SADA 393 (623)
Q Consensus 390 ~~g~ 393 (623)
+.|.
T Consensus 164 ~~~~ 167 (201)
T 3ltj_A 164 EIGG 167 (201)
T ss_dssp HHCS
T ss_pred HhCc
Confidence 5554
No 287
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=50.21 E-value=77 Score=27.64 Aligned_cols=49 Identities=8% Similarity=0.090 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 044791 292 WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD 340 (623)
Q Consensus 292 ~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~ 340 (623)
|.-+..+-++.+....+.|+..+..+.+.++-|.+++.-|+++|+.++.
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445556666666667788888888888888888888888888887763
No 288
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=49.32 E-value=3e+02 Score=30.18 Aligned_cols=116 Identities=11% Similarity=-0.096 Sum_probs=62.3
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----------cCCCCC----cc---
Q 044791 354 ADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSE-----------FGISPG----TE--- 415 (623)
Q Consensus 354 ~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~-----------~g~~p~----~~--- 415 (623)
.+.|+++.|...|+.|...... .....--+..++...|+.++|..+|..+... .|..+. ..
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~ 374 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQN 374 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSC
T ss_pred HHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChh
Confidence 4557777777777776543211 2222334555666677777777777665431 122110 00
Q ss_pred ---c-----hhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 044791 416 ---H-----YLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEE 471 (623)
Q Consensus 416 ---t-----y~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~ 471 (623)
. -..-+..+...|...+|...+...+. ..+......+.......|..+.+..+..
T Consensus 375 ~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~-~~~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 375 VDSALTQGPEMARVRELMYWNLDNTARSEWANLVK-SKSKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 0 01123456778888888887777333 2344333444444556777776554443
No 289
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=49.20 E-value=67 Score=25.50 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHH
Q 044791 296 AKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEG 362 (623)
Q Consensus 296 A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA 362 (623)
...+++.+.+.|+- +..-+..+.. .....++|.++++.+..++..+|..++.++...+...-|
T Consensus 24 v~~lld~L~~~~vl-t~~~~e~I~~---~~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~~La 86 (94)
T 2p1h_A 24 TSYIMDHMISDGFL-TISEEEKVRN---EPTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYKDLA 86 (94)
T ss_dssp HHHHHHHHHHHTSS-CHHHHHHHHT---SSSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHc---CCChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHHHHH
Confidence 34577777777765 4444444433 357889999999999999999999999999888754433
No 290
>1n00_A Annexin GH1; membrane-binding, calcium-binding, membrane protein; 2.10A {Gossypium hirsutum} SCOP: a.65.1.1 PDB: 3brx_A 1ycn_A 2q4c_A 1dk5_A
Probab=48.84 E-value=2e+02 Score=28.53 Aligned_cols=37 Identities=11% Similarity=0.173 Sum_probs=19.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 044791 346 WHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAV 384 (623)
Q Consensus 346 yn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~l 384 (623)
|-.+|.+++...-..+|..+.+.|+ |...|..++.-+
T Consensus 78 f~~ll~~l~~~~~~~dA~~l~~A~k--g~Gtde~~lieI 114 (321)
T 1n00_A 78 FERLVLLWALDPAERDALLANEATK--RWTSSNQVLMEI 114 (321)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHS--SSCSSCHHHHHH
T ss_pred HHHHHHHHcCChhHHHHHHHHHHhh--ccCCCHHHHHHH
Confidence 4445555554333456666666663 444555544333
No 291
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=47.49 E-value=39 Score=31.14 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=18.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCC
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKAD 276 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd 276 (623)
+.+...+..|+.+.+..+++.|..++
T Consensus 13 t~L~~A~~~g~~~~v~~Ll~~g~~~~ 38 (237)
T 3b7b_A 13 SPLHAAAEAGHVDICHMLVQAGANID 38 (237)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred CHHHHHHHcCcHHHHHHHHHcCCCcC
Confidence 55666777888887777777776554
No 292
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=47.02 E-value=42 Score=32.50 Aligned_cols=83 Identities=11% Similarity=0.033 Sum_probs=46.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCCH
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLV--LNNKVIEMYGKCGSM 328 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--~y~~Li~~y~k~g~~ 328 (623)
+.+...+..|+.+-+..+++.|..++...-.+.+...+..|+.+-+.. +++.|..++.. .-.+.+...+..|+.
T Consensus 33 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~----Ll~~ga~~~~~d~~g~t~L~~A~~~g~~ 108 (285)
T 3kea_A 33 SASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLEDTKIVKI----LLFSGLDDSQFDDKGNTALYYAVDSGNM 108 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSSCHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCCHHHHHH----HHHCCCCCCCcCCCCCcHHHHHHHcCCH
Confidence 446666788999888888887655443222334455566677664443 44455544321 111233444566666
Q ss_pred HHHHHHHHH
Q 044791 329 TDARRVFDH 337 (623)
Q Consensus 329 ~~A~~lf~~ 337 (623)
+-+.-+++.
T Consensus 109 ~~v~~Ll~~ 117 (285)
T 3kea_A 109 QTVKLFVKK 117 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666555554
No 293
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=46.57 E-value=57 Score=29.93 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=6.7
Q ss_pred HHHcCCHHHHHHHHH
Q 044791 322 YGKCGSMTDARRVFD 336 (623)
Q Consensus 322 y~k~g~~~~A~~lf~ 336 (623)
.++.|+.+.+..+++
T Consensus 16 A~~~g~~~~v~~Ll~ 30 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVN 30 (241)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 344444444444444
No 294
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=46.07 E-value=31 Score=31.83 Aligned_cols=72 Identities=11% Similarity=0.011 Sum_probs=40.1
Q ss_pred HHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC---------CccchhhHHHHHHhcCCHHHHH
Q 044791 366 FEQMRKLGLQPNEQT--FLAVFSACGSADAIEEAFIHFESMKSEFGISP---------GTEHYLGLVGVLGKCGHLFEAQ 434 (623)
Q Consensus 366 ~~eM~~~g~~Pd~~t--y~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p---------~~~ty~~Li~~~~k~g~~e~A~ 434 (623)
++.+++.|..++... -.+.+...+..|..+-+..+++.+.+. |..+ |..-. +-+...++.|..+-+.
T Consensus 137 v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~-g~~~~~~~~~~~~~~~g~-tpl~~A~~~g~~~~v~ 214 (232)
T 2rfa_A 137 VRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSY-DGGDHLKSLELVPNNQGL-TPFKLAGVEGNIVMFQ 214 (232)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHT-TCSCSSCCGGGCCCTTSC-CHHHHHHHHTCHHHHH
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhc-CCchhhhhhhccCCCCCC-CHHHHHHHcCCHHHHH
Confidence 333444565543221 123445556677887777777666644 5432 23333 3455556778888777
Q ss_pred HHHHh
Q 044791 435 QFIEQ 439 (623)
Q Consensus 435 ~lf~~ 439 (623)
.+++.
T Consensus 215 ~Ll~~ 219 (232)
T 2rfa_A 215 HLMQK 219 (232)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77766
No 295
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=45.98 E-value=82 Score=30.68 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=61.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHc-CCCCCHHH--HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHc
Q 044791 251 ADLARLCQEGKVKEAIELMDK-GVKADASC--FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLV--LNNKVIEMYGKC 325 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~-~~~pd~~t--y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--~y~~Li~~y~k~ 325 (623)
..+...++.|+.+....++.+ +..++... -.+.+...+..|+.+-+. .+++.|..++.. .-.+.+...+..
T Consensus 26 ~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~ 101 (351)
T 3utm_A 26 DELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQ----LLLQHGADVHAKDKGGLVPLHNACSY 101 (351)
T ss_dssp HHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHH----HHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred hhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHH----HHHHcCCCCCccCCCCCcHHHHHHHC
Confidence 446667788999988888864 44332211 123344445567765444 444556544321 112344556677
Q ss_pred CCHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 044791 326 GSMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN 377 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd 377 (623)
|+.+-+..+++.-... +...++.|. ..+..|..+- ++.+.+.|..++
T Consensus 102 g~~~iv~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~~----v~~Ll~~g~~~~ 151 (351)
T 3utm_A 102 GHYEVTELLLKHGACVNAMDLWQFTPLH-EAASKNRVEV----CSLLLSHGADPT 151 (351)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHHTTCHHH----HHHHHHTTCCTT
T ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCHHH-HHHHcCCHHH----HHHHHHcCCCCc
Confidence 8887776666643222 222233333 3345666543 344445565553
No 296
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=45.34 E-value=44 Score=27.04 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=43.3
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHH
Q 044791 298 KVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQ 364 (623)
Q Consensus 298 ~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~ 364 (623)
.+++.+.+.|+- +..-...+-. .....+.+.|.++++.+..++..+|..++.++...|...-|..
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~l 89 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLASF 89 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHHH
Confidence 466677777654 3333333322 1012578999999999999999999999999977676554443
No 297
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=43.97 E-value=39 Score=33.80 Aligned_cols=178 Identities=9% Similarity=-0.041 Sum_probs=97.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHH----------------
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVL---------------- 314 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~---------------- 314 (623)
+.|...+..|+.+-+..+++.|...+...-.+.+...+..|+.+-+..+++.....|..++...
T Consensus 55 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (364)
T 3ljn_A 55 TALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVK 134 (364)
T ss_dssp CHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEE
T ss_pred cHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccC
Confidence 4466677889998888888877665542222334444567888888777777655555433200
Q ss_pred ---HHHHHHHHHHcC--CHHHHHHHHHHhhcC---ChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-----CC---H
Q 044791 315 ---NNKVIEMYGKCG--SMTDARRVFDHMADR---SMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQ-----PN---E 378 (623)
Q Consensus 315 ---y~~Li~~y~k~g--~~~~A~~lf~~m~~~---~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~-----Pd---~ 378 (623)
-.+.+...+..| +.+-+..+++.-... |..-++.|.. .+..|..+-+..+++ .|.. ++ .
T Consensus 135 ~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~-A~~~g~~~~v~~Ll~----~g~~~~~~~~~~~~~ 209 (364)
T 3ljn_A 135 HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR-AMEFRNREALDLMMD----TVPSKSSLRLDYANK 209 (364)
T ss_dssp EESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHH-HHHTTCHHHHHHHHH----HCSCSSSCCTTCCCT
T ss_pred CCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHH-HHHcCCHHHHHHHHh----cccccccccccccCC
Confidence 123455566777 777776666653322 2222333433 356677654444443 3322 22 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccc--hhhHHHHHHhcCCHHHHHHHHHh
Q 044791 379 QTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEH--YLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 379 ~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~t--y~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
.-. +.|...+..|..+-+..++ +. |..++... -.+-+..-+..|..+-+..+++.
T Consensus 210 ~g~-t~L~~A~~~g~~~~v~~Ll----~~-gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 210 QGN-SHLHWAILINWEDVAMRFV----EM-GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp TCC-CTTHHHHTTTCHHHHHHHH----TT-TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred CCC-cHHHHHHHcCCHHHHHHHH----Hc-CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence 112 2333445677776544444 23 66664332 22345555666888777777776
No 298
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=43.81 E-value=32 Score=30.82 Aligned_cols=81 Identities=12% Similarity=0.074 Sum_probs=42.7
Q ss_pred HHHHHHHcCCHHHHHHHHHcCC-CC---CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHc
Q 044791 252 DLARLCQEGKVKEAIELMDKGV-KA---DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVL--NNKVIEMYGKC 325 (623)
Q Consensus 252 li~~~~~~g~~~~A~~l~~~~~-~p---d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~--y~~Li~~y~k~ 325 (623)
.+...+..|+.+....+++.+. .+ |..-++.|..+ +..|+.+ +++.+++.|..++... -.+.+...+..
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 8 ALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIA-VHNNDIE----IAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHH-HHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 3555677889999888887543 32 22223333333 3455544 4444455565543211 11234445566
Q ss_pred CCHHHHHHHHHH
Q 044791 326 GSMTDARRVFDH 337 (623)
Q Consensus 326 g~~~~A~~lf~~ 337 (623)
|+.+-+..+++.
T Consensus 83 ~~~~~~~~Ll~~ 94 (201)
T 3hra_A 83 GRTEILAYMLKH 94 (201)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCHHHHHHHHhc
Confidence 777666666644
No 299
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=43.49 E-value=90 Score=30.58 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=14.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCC
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKAD 276 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd 276 (623)
+++...++.|+++.+..+++.|..++
T Consensus 27 t~L~~Av~~g~~~~V~~LL~~Gadvn 52 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLEGGANVN 52 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTCCTT
T ss_pred hHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 34444456666666666666555443
No 300
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=43.38 E-value=81 Score=29.34 Aligned_cols=52 Identities=12% Similarity=0.142 Sum_probs=37.4
Q ss_pred cCCHHHHHHHHHHhhcCChH-----HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 044791 325 CGSMTDARRVFDHMADRSMD-----SWHLMINGYADNGLGDEGLQLFEQMRKLGLQP 376 (623)
Q Consensus 325 ~g~~~~A~~lf~~m~~~~~~-----tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P 376 (623)
++...++..+|..|...++- -|-.-...+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44567888888887654432 56666677777888888888888887777776
No 301
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=43.37 E-value=1.8e+02 Score=25.85 Aligned_cols=143 Identities=10% Similarity=0.012 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 044791 311 DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGS 390 (623)
Q Consensus 311 d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~ 390 (623)
|..+-...+.++.+.|.-+....+.+.+...+...-...+.++.+.|.. ++...+.++.. .++...-...+.++++
T Consensus 27 ~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~ 102 (201)
T 3ltj_A 27 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQ 102 (201)
T ss_dssp CHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3333334444444444433333333333344444444444555555543 33333333332 2455555555666666
Q ss_pred cCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChh
Q 044791 391 ADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDID 464 (623)
Q Consensus 391 ~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~ 464 (623)
.|+.+ +...+..+.. .++..+-...+.++++.|..+ +...+...+. .++...-...+.++...|+.+
T Consensus 103 ~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~-d~~~~vr~~A~~aL~~~~~~~ 169 (201)
T 3ltj_A 103 IGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK-DEDGWVRQSAADALGEIGGER 169 (201)
T ss_dssp HCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHTCGG-GHHHHHHHTT-CSSHHHHHHHHHHHHHHCSHH
T ss_pred hCcHH-HHHHHHHHHc----CCCHHHHHHHHHHHHHhCCHH-HHHHHHHHHc-CCCHHHHHHHHHHHHHhCchh
Confidence 55532 2233323331 234444445555666655533 3333333243 455555555566666666543
No 302
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=42.80 E-value=1.1e+02 Score=26.15 Aligned_cols=72 Identities=8% Similarity=0.022 Sum_probs=34.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHhhcCChHHHHHHHHH
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS--MTDARRVFDHMADRSMDSWHLMING 352 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~--~~~A~~lf~~m~~~~~~tyn~Li~~ 352 (623)
...+|.-|...|+.++|.+.++++..-.+. ...++.++..++-+.++ .+.+..++..+.+.++.+-..+..|
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q~~~G 83 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 83 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 345555555566666666666655321111 12333334444443321 3445555555555555554444444
No 303
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=42.73 E-value=48 Score=30.41 Aligned_cols=86 Identities=13% Similarity=-0.016 Sum_probs=43.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhhcCCCCCcc--chhhHHHHHHhcCCHHHHHHHHHhh--CCC---------CCCHHHH
Q 044791 384 VFSACGSADAIEEAFIHFESMKSEFGISPGTE--HYLGLVGVLGKCGHLFEAQQFIEQK--LPF---------EPTAEFW 450 (623)
Q Consensus 384 li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~--ty~~Li~~~~k~g~~e~A~~lf~~~--m~~---------~Pd~~ty 450 (623)
.+...+..|..+-+..++ +. |..++.. .-.+.+...+..|..+-+..+++.. .+. ..|..-+
T Consensus 124 ~L~~A~~~~~~~~v~~Ll----~~-ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~ 198 (232)
T 2rfa_A 124 PLSFAACVGSEEIVRLLI----EH-GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGL 198 (232)
T ss_dssp HHHHHHHHTCHHHHHHHH----HT-TCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSC
T ss_pred HHHHHHHcCCHHHHHHHH----HC-CCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCC
Confidence 344445567766555444 23 6655432 2234566677888888774333321 221 1233233
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 451 EALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 451 ~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
+. +...+..|+.+.+..+++.-..
T Consensus 199 tp-l~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 199 TP-FKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp CH-HHHHHHHTCHHHHHHHHHHHHH
T ss_pred CH-HHHHHHcCCHHHHHHHHhcCcc
Confidence 33 3444567888755555554433
No 304
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=42.70 E-value=28 Score=31.95 Aligned_cols=21 Identities=14% Similarity=-0.045 Sum_probs=12.7
Q ss_pred hHHHHHHhcCCHHHHHHHHHh
Q 044791 419 GLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 419 ~Li~~~~k~g~~e~A~~lf~~ 439 (623)
+.+...+..|..+-+..+++.
T Consensus 109 t~L~~A~~~~~~~~~~~Ll~~ 129 (228)
T 2dzn_A 109 TCLHLAVGKKWFEVSQFLIEN 129 (228)
T ss_dssp CHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHcCCHhHHHHHHHc
Confidence 344455566777766666655
No 305
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=41.10 E-value=10 Score=35.28 Aligned_cols=10 Identities=0% Similarity=-0.253 Sum_probs=3.9
Q ss_pred HhcCCHHHHH
Q 044791 425 GKCGHLFEAQ 434 (623)
Q Consensus 425 ~k~g~~e~A~ 434 (623)
++.|..+-+.
T Consensus 185 ~~~~~~~~v~ 194 (237)
T 3b7b_A 185 ARENRYDCVV 194 (237)
T ss_dssp HHTTCHHHHH
T ss_pred HHhCCHhHHH
Confidence 3344444333
No 306
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=41.03 E-value=2.3e+02 Score=26.57 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhhcCCCCCc------cchhhHHHHHHhcCCHHHHHHHHHhhCCCC
Q 044791 394 IEEAFIHFESMKSEFGISPGT------EHYLGLVGVLGKCGHLFEAQQFIEQKLPFE 444 (623)
Q Consensus 394 ~e~A~~l~~~m~~~~g~~p~~------~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~ 444 (623)
+|.|+.+|+.+.+...+.... ..--..+..|.+.|.+++|.+++++.|+..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 578888888887663222111 011134556888999999999999977743
No 307
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=40.73 E-value=1.1e+02 Score=26.24 Aligned_cols=146 Identities=12% Similarity=0.012 Sum_probs=62.9
Q ss_pred HHHHcCCHHHHHHHHHHhhc---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHH
Q 044791 321 MYGKCGSMTDARRVFDHMAD---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTF--LAVFSACGSADAIE 395 (623)
Q Consensus 321 ~y~k~g~~~~A~~lf~~m~~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty--~~li~a~~~~g~~e 395 (623)
..++.|+++.+..+++.-.. .|...++.|. ..+..|+.+ +++.+.+.|..++.... .+.+...+..|..+
T Consensus 9 ~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 83 (167)
T 3v31_A 9 QLAAQGEMLYLATRIEQENVINHTDEEGFTPLM-WAAAHGQIA----VVEFLLQNGADPQLLGKGRESALSLACSKGYTD 83 (167)
T ss_dssp HHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred HHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHH-HHHHCCCHH----HHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence 34455666665555554321 1111222222 233445433 33333444544432111 12233334456655
Q ss_pred HHHHHHHHHHhhcCCCCCccc--hhhHHHHHHhcCCHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 044791 396 EAFIHFESMKSEFGISPGTEH--YLGLVGVLGKCGHLFEAQQFIEQKLPF-EPTAEFWEALRNYARIHGDIDLEDHAEEL 472 (623)
Q Consensus 396 ~A~~l~~~m~~~~g~~p~~~t--y~~Li~~~~k~g~~e~A~~lf~~~m~~-~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~ 472 (623)
-+..+++ . |..++... -.+.+...+..|..+-+..+++....+ ..|..-+ +.+...+..|+.+.+..+.+.
T Consensus 84 ~v~~Ll~----~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~~~~L~~~ 157 (167)
T 3v31_A 84 IVKMLLD----C-GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGY-NSMDLAVALGYRSVQQVIESH 157 (167)
T ss_dssp HHHHHHH----H-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHH----C-CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHH
Confidence 4444332 2 44443221 123444555667777666666541110 1111111 223344456777666666665
Q ss_pred HHhcC
Q 044791 473 MVDLD 477 (623)
Q Consensus 473 ~~~m~ 477 (623)
..++.
T Consensus 158 ~~~~~ 162 (167)
T 3v31_A 158 LLKLL 162 (167)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 55543
No 308
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=40.51 E-value=70 Score=28.24 Aligned_cols=72 Identities=8% Similarity=0.022 Sum_probs=35.6
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHhhcCChHHHHHHHHH
Q 044791 280 FYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS--MTDARRVFDHMADRSMDSWHLMING 352 (623)
Q Consensus 280 y~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~--~~~A~~lf~~m~~~~~~tyn~Li~~ 352 (623)
...+|.-|...|+.++|.+.++++..-.+. ...++.++..++-+.++ .+.+..++..+...++.+-..+..|
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q~~~G 85 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRG 85 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 445566666666666666666665321111 12333444444444222 3445555555555555555555554
No 309
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=40.26 E-value=56 Score=29.88 Aligned_cols=82 Identities=15% Similarity=0.082 Sum_probs=38.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhhcCCCCCccc--hhhHHHHHHhcCCHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcC
Q 044791 385 FSACGSADAIEEAFIHFESMKSEFGISPGTEH--YLGLVGVLGKCGHLFEAQQFIEQKLPF-EPTAEFWEALRNYARIHG 461 (623)
Q Consensus 385 i~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~t--y~~Li~~~~k~g~~e~A~~lf~~~m~~-~Pd~~ty~~Li~a~~~~g 461 (623)
+...+..|+.+-+..+++ . |..++... -.+.+...+..|..+-+..+++....+ ..|..-. +.+...+..|
T Consensus 110 L~~A~~~~~~~~~~~Ll~----~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~ 183 (231)
T 3aji_A 110 LHYAASKNRHEIAVMLLE----G-GANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGN-TPLHLACDEE 183 (231)
T ss_dssp HHHHHHTTCHHHHHHHHH----T-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSC-CHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHH----c-CCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCC-CHHHHHHHCC
Confidence 333445566654444432 2 54443322 224455566677877776666651111 1121111 2233345667
Q ss_pred ChhHHHHHHHHHHhc
Q 044791 462 DIDLEDHAEELMVDL 476 (623)
Q Consensus 462 ~~~~A~~~~~~~~~m 476 (623)
+.+ +.+.+.+.
T Consensus 184 ~~~----~v~~Ll~~ 194 (231)
T 3aji_A 184 RVE----EAKFLVTQ 194 (231)
T ss_dssp CHH----HHHHHHHT
T ss_pred CHH----HHHHHHHC
Confidence 764 45555554
No 310
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=40.14 E-value=48 Score=29.91 Aligned_cols=60 Identities=12% Similarity=0.092 Sum_probs=39.1
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCH
Q 044791 253 LARLCQEGKVKEAIELMDKGVKADA-SCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDL 312 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~~~pd~-~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 312 (623)
|...++.|++++...+++.++.-.. ..=.+.|...+..|+.+.-.++.+.+++.|..++.
T Consensus 10 l~~Aa~~g~~~~~~~l~~~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 10 VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHHHHHHSCHHHHHHHHHHSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHHHcCCHHHHHHHHhcCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 4455788999998888877654222 11224455556667777667788888888876653
No 311
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=39.64 E-value=2e+02 Score=25.37 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=30.3
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH
Q 044791 296 AKKVHDYFLQSTIRG-DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD 344 (623)
Q Consensus 296 A~~l~~~m~~~g~~p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~ 344 (623)
+.++|..|...|+-- -+.-|......+-..|++.+|.+||+.-.+.+..
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 666777776665533 2455666666666677777777777665554443
No 312
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=39.48 E-value=74 Score=27.50 Aligned_cols=150 Identities=8% Similarity=0.022 Sum_probs=69.5
Q ss_pred HHHHHcCCHHHHHHHHHHhh----cCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCC
Q 044791 320 EMYGKCGSMTDARRVFDHMA----DRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQT--FLAVFSACGSADA 393 (623)
Q Consensus 320 ~~y~k~g~~~~A~~lf~~m~----~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~t--y~~li~a~~~~g~ 393 (623)
...++.|+++.+..+++.-. ..+..-++.|..+ +..|+.+-+ +.+.+.|..++... -.+.+...+..|.
T Consensus 7 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A-~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 81 (172)
T 3v30_A 7 HQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWA-SAFGEIETV----RFLLEWGADPHILAKERESALSLASTGGY 81 (172)
T ss_dssp HHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHH-HHTTCHHHH----HHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHH-HHcCCHHHH----HHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence 34456677766666665422 1222233333333 455554333 33334454443211 1123334455666
Q ss_pred HHHHHHHHHHHHhhcCCCCCccc--hhhHHHHHHhcCCHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcCChhHHHHHH
Q 044791 394 IEEAFIHFESMKSEFGISPGTEH--YLGLVGVLGKCGHLFEAQQFIEQKLPF-EPTAEFWEALRNYARIHGDIDLEDHAE 470 (623)
Q Consensus 394 ~e~A~~l~~~m~~~~g~~p~~~t--y~~Li~~~~k~g~~e~A~~lf~~~m~~-~Pd~~ty~~Li~a~~~~g~~~~A~~~~ 470 (623)
.+-+..++ +. |..++... -.+.+...+..|..+-+..+++....+ ..|..-. +.+...+..|+.+.+..+.
T Consensus 82 ~~~v~~Ll----~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~-t~l~~A~~~~~~~~~~~L~ 155 (172)
T 3v30_A 82 TDIVGLLL----ER-DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGY-TPMDLAVALGYRKVQQVIE 155 (172)
T ss_dssp HHHHHHHH----TT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHH----Hc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCC-CHHHHHHHhCcHHHHHHHH
Confidence 65444333 22 55544321 223455556678887777666651111 1111111 2333445567777666666
Q ss_pred HHHHhcCCCC
Q 044791 471 ELMVDLDPSK 480 (623)
Q Consensus 471 ~~~~~m~~~~ 480 (623)
+...++...+
T Consensus 156 ~~~~~~~~~~ 165 (172)
T 3v30_A 156 NHILKLFQSN 165 (172)
T ss_dssp HHHHHHSCC-
T ss_pred HHHHHHhccc
Confidence 6666554443
No 313
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=38.94 E-value=75 Score=30.30 Aligned_cols=85 Identities=14% Similarity=0.084 Sum_probs=43.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHc------CCCC----CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 044791 251 ADLARLCQEGKVKEAIELMDK------GVKA----DASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIE 320 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~------~~~p----d~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~ 320 (623)
-.|..+....++++|++++++ ++.. +.......++.-.....-.-+..+.+++ .. ..+.......+.
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHH
Confidence 457788889999999998853 3332 1111222222222222223333333333 21 334444555556
Q ss_pred HHHHcCCHHHHHHHHHHh
Q 044791 321 MYGKCGSMTDARRVFDHM 338 (623)
Q Consensus 321 ~y~k~g~~~~A~~lf~~m 338 (623)
.+.+.|+-++|.++|=+.
T Consensus 100 ~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHH
Confidence 666666666666666443
No 314
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=38.91 E-value=91 Score=29.94 Aligned_cols=54 Identities=7% Similarity=-0.044 Sum_probs=23.5
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 044791 418 LGLVGVLGKCGHLFEAQQFIEQKLPFEPTAEFWEALRNYARIHGDIDLEDHAEEL 472 (623)
Q Consensus 418 ~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~ 472 (623)
.+.+...+..|..+-+..+++. -....+...-.+.+...+..|+.+.+..+++.
T Consensus 130 ~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 183 (285)
T 3kea_A 130 KTSFYHAVMLNDVSIVSYFLSE-IPSTFDLAILLSCIHITIKNGHVDMMILLLDY 183 (285)
T ss_dssp GSHHHHHHHTTCHHHHHHHHTT-SCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhC-CCccccccCCccHHHHHHHcChHHHHHHHHHc
Confidence 3445555556666655555554 21111110112233333456666544444443
No 315
>2kxc_B ESPF-like protein; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Escherichia coli}
Probab=37.68 E-value=20 Score=24.92 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=18.1
Q ss_pred eehhcccccccccCCCCCCCCCCCCC
Q 044791 46 SLAKTLSTSAVEYNTPPPQPPQSPLS 71 (623)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (623)
.++|++.+|..-+-+|.++||.++.+
T Consensus 17 e~ska~~~s~~~p~rPa~P~Pt~~~~ 42 (48)
T 2kxc_B 17 GIQPARNMAEHIPPAPNWPAPTPPVQ 42 (48)
T ss_pred hhccchhhhccCCCCCCCCCCCCccc
Confidence 45688888888777777666655543
No 316
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=37.68 E-value=2.4e+02 Score=25.70 Aligned_cols=39 Identities=18% Similarity=0.037 Sum_probs=28.7
Q ss_pred CCCCCCHHHHHH--HHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 441 LPFEPTAEFWEA--LRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 441 m~~~Pd~~ty~~--Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
|+.-|..-+|-. ...-|...|..|+...++..++..+|.
T Consensus 200 ~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 200 MEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRKDPM 240 (242)
T ss_dssp HTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhcCCC
Confidence 446677766543 233567899999999999999988765
No 317
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=34.94 E-value=51 Score=31.21 Aligned_cols=25 Identities=12% Similarity=0.202 Sum_probs=15.9
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCC
Q 044791 252 DLARLCQEGKVKEAIELMDKGVKAD 276 (623)
Q Consensus 252 li~~~~~~g~~~~A~~l~~~~~~pd 276 (623)
.+...+..|+.+.+..+++.|..++
T Consensus 6 ~L~~A~~~g~~~~v~~Ll~~g~~~~ 30 (261)
T 2xai_A 6 PMHEAAIHGHQLSLRNLISQGWAVN 30 (261)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSS
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCC
Confidence 3555566777777777777665543
No 318
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=34.92 E-value=1.2e+02 Score=30.86 Aligned_cols=62 Identities=11% Similarity=0.150 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhcCCh---HHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCC
Q 044791 315 NNKVIEMYGKCGSMTDARRVFDHMADRSM---DSWHLMINGYADNGL--GDEGLQLFEQMRKLGLQP 376 (623)
Q Consensus 315 y~~Li~~y~k~g~~~~A~~lf~~m~~~~~---~tyn~Li~~~~~~g~--~eeA~~l~~eM~~~g~~P 376 (623)
.+.+|.-|...|+.++|.+.++++..+.. +.+.++..++-+.++ .+.+..+|..+...|+-.
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls 286 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 286 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCC
Confidence 45667777777777777777777765432 244444444444332 344666666666665543
No 319
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=34.76 E-value=2.1e+02 Score=27.15 Aligned_cols=85 Identities=8% Similarity=-0.100 Sum_probs=42.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcC-----C-----hHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 044791 318 VIEMYGKCGSMTDARRVFDHMADR-----S-----MDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSA 387 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~~-----~-----~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a 387 (623)
-++.+....++++|..++++.++. + ...-...|..-+....-.-+..+.+++ .. ..+.......+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHH
Confidence 355555666666666666655320 0 011122222223333333334444444 22 3345555566677
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 044791 388 CGSADAIEEAFIHFESMK 405 (623)
Q Consensus 388 ~~~~g~~e~A~~l~~~m~ 405 (623)
+.+.|+-++|.++|-+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 777777777777776554
No 320
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=34.49 E-value=36 Score=30.42 Aligned_cols=83 Identities=11% Similarity=0.067 Sum_probs=45.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHH
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADAS---CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD---LVLNNKVIEMYGK 324 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~---ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~~y~~Li~~y~k 324 (623)
+.+...++.|+.+-+..+++.|..++.. ..+.| ...+..|+.+-+..+++. .+..++ ..- .+.+...++
T Consensus 41 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l-~~A~~~~~~~~~~~Ll~~---~~~~~~~~~~~g-~t~L~~A~~ 115 (201)
T 3hra_A 41 TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPY-LYAGAQGRTEILAYMLKH---ATPDLNKHNRYG-GNALIPAAE 115 (201)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH-HHHHHTTCHHHHHHHHHH---SCCCTTCCCTTS-CCSHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH-HHHHHcCCHHHHHHHHhc---cCcccccccCCC-CcHHHHHHH
Confidence 3466667889998888888887766532 23333 334455776655544433 222221 111 123344556
Q ss_pred cCCHHHHHHHHHHh
Q 044791 325 CGSMTDARRVFDHM 338 (623)
Q Consensus 325 ~g~~~~A~~lf~~m 338 (623)
.|+.+-+..+++.-
T Consensus 116 ~~~~~~v~~Ll~~g 129 (201)
T 3hra_A 116 KGHIDNVKLLLEDG 129 (201)
T ss_dssp TTCHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHcC
Confidence 67766666665543
No 321
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=33.86 E-value=4.1e+02 Score=30.57 Aligned_cols=48 Identities=10% Similarity=-0.111 Sum_probs=22.2
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 044791 355 DNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMK 405 (623)
Q Consensus 355 ~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~ 405 (623)
+.|..++-..++++.+... +..--..++.+++...+.+...++++.+.
T Consensus 738 ~~g~~~~~~~l~~~~~~~~---~~~ek~~ll~aL~~~~d~~~l~~~L~~~l 785 (909)
T 4fke_A 738 AQGGQDQWDFAWGQLQQAQ---LVNEADKLRSALACSNEVWLLNRYLGYTL 785 (909)
T ss_dssp HHSCHHHHHHHHHHHHHCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHTT
T ss_pred HhCCHHHHHHHHHHHHccC---CHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 3344444444444444321 22233445555555555555555555544
No 322
>2pby_A Glutaminase; secsg, riken, structural genomics, PSI, protein structure initiative, riken structural genomics/proteomics initiative, RSGI; 2.07A {Geobacillus kaustophilus}
Probab=33.68 E-value=75 Score=31.60 Aligned_cols=106 Identities=13% Similarity=0.127 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCCC-CCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCH
Q 044791 467 DHAEELMVDLDPS-KADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQ 545 (623)
Q Consensus 467 ~~~~~~~~~m~~~-~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~ 545 (623)
.++++.++++.-+ .+. .|...|.+-.+.-.| ..|+.+| |+..|.-++.. ...++-
T Consensus 136 ~~il~~~~~lag~~~i~--------~d~~v~~SE~~t~~r------------N~AlA~~--lks~g~i~~dv--~~~Ld~ 191 (308)
T 2pby_A 136 ERLLAFVRRLAGNERIS--------YSDEVARSEFETAFL------------NRSLCYF--LKQHRIIDEDV--EELMEL 191 (308)
T ss_dssp HHHHHHHHHHHTCTTCC--------BCHHHHHHHHHHCHH------------HHHHHHH--HHHTTSCCSCH--HHHHHH
T ss_pred HHHHHHHHHHhCCCCCc--------cCHHHHHHHHhccHH------------HHHHHHH--HHHCCCCCCCH--HHHHHH
Confidence 3555556655433 333 667777665552211 3677766 88888776421 112222
Q ss_pred HHHHHHHHHHHhHHHHHHhcccCCCCCh-----------hH-HHhhHhhhcchhHHHHHHHHH
Q 044791 546 EAKEQALLYHSERLAIAYGLISTPARTP-----------LR-IIKNLRVCGDCHNAIKIMSRI 596 (623)
Q Consensus 546 ~~k~~~~~~~~g~l~~A~~ll~~m~~~~-----------~~-i~~~l~~~g~~~~a~~l~~~~ 596 (623)
+.+...+......+..+-.+|-.--..| .+ +...+.-||-++.+-++..++
T Consensus 192 Yf~qCSi~vt~~dLA~~~a~LAn~G~~P~tg~~vl~~~~~r~v~a~M~TcGmYd~SG~fa~~V 254 (308)
T 2pby_A 192 YTKQCAIEMTCIDLARIGLVLALDGRDPHSSEPLMPLDVARICKTFMVTCGMYNSSGEFAIKV 254 (308)
T ss_dssp HHHHHTBEECHHHHHHHHHHHHTTTBCTTTCCBSSCHHHHHHHHHHHHHSSSTTCHHHHHHHT
T ss_pred HHHHhcccccHHHHHHHHHHHhCCCcCCCCCCEEECHHHHHHHHHHHhhcCCchhHHHHHHHc
Confidence 2222212223344444443333221111 12 334458899999998887664
No 323
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=33.54 E-value=6e+02 Score=29.13 Aligned_cols=22 Identities=9% Similarity=0.138 Sum_probs=11.7
Q ss_pred hhHHHHHHhcCCHHHHHHHHHh
Q 044791 418 LGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 418 ~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
..++.+++...+.+...++++.
T Consensus 762 ~~ll~aL~~~~d~~~l~~~L~~ 783 (909)
T 4fke_A 762 DKLRSALACSNEVWLLNRYLGY 783 (909)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHH
Confidence 3455555555555555555554
No 324
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=33.31 E-value=1.1e+02 Score=30.67 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=9.8
Q ss_pred HHHHHhcCCHHHHHHHHHh
Q 044791 421 VGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 421 i~~~~k~g~~e~A~~lf~~ 439 (623)
+..+++....+.+.++|.+
T Consensus 148 l~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 148 LGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHcCHHHHHHHHHH
Confidence 3444444555555555555
No 325
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.67 E-value=4.3e+02 Score=26.88 Aligned_cols=86 Identities=12% Similarity=0.065 Sum_probs=56.7
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcC----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc------
Q 044791 283 LFELCGNPKWYENAKKVHDYFLQST----------------IRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD------ 340 (623)
Q Consensus 283 Ll~~~~~~g~~~~A~~l~~~m~~~g----------------~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~------ 340 (623)
++.++....+.++|.++++.+.+.- ...-..+...+...|...|+.++|..++++...
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC
Confidence 4455566678888888887763220 122245666777888899999999998887753
Q ss_pred -CChH----HHHHHHHHHHHcCChHHHHHHHHH
Q 044791 341 -RSMD----SWHLMINGYADNGLGDEGLQLFEQ 368 (623)
Q Consensus 341 -~~~~----tyn~Li~~~~~~g~~eeA~~l~~e 368 (623)
.+.. -|.+.+.-|...+++.++...+-.
T Consensus 162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~ 194 (393)
T 4b4t_O 162 SIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLL 194 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 1211 466677777778888776654433
No 326
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=31.62 E-value=91 Score=25.67 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=22.1
Q ss_pred HHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 044791 256 LCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQS 306 (623)
Q Consensus 256 ~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~ 306 (623)
+...|++++|+.+.+....||...|-.|-. .+.|-.+++..-+.++...
T Consensus 49 LmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 49 LANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 444555555555555444555544443322 2344444444444444433
No 327
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=31.45 E-value=2.7e+02 Score=27.54 Aligned_cols=68 Identities=15% Similarity=0.021 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHH
Q 044791 449 FWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMK 528 (623)
Q Consensus 449 ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~ 528 (623)
..+.++.-|...|+.++|..+++.+.. ... -.......+..+.-+.++- +.+...++|..+.
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~---p~f---------~~e~V~~ai~~alE~~~~~------~re~~~~LL~~L~ 229 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEV---PHF---------HHELVYEAIIMVLESTGES------TFKMILDLLKSLW 229 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCC---GGG---------HHHHHHHHHHHHHTCCSSH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCC---Ccc---------hHHHHHHHHHHHHccCChH------HHHHHHHHHHHHH
Confidence 456788888889999966666655532 111 1133344444444443210 1145667777777
Q ss_pred HCCccc
Q 044791 529 ESTYVP 534 (623)
Q Consensus 529 ~~Gi~P 534 (623)
+.|+.+
T Consensus 230 ~~~~ls 235 (307)
T 2zu6_B 230 KSSTIT 235 (307)
T ss_dssp HHCSSC
T ss_pred HCCCCC
Confidence 666543
No 328
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=31.20 E-value=1.6e+02 Score=29.90 Aligned_cols=143 Identities=12% Similarity=0.065 Sum_probs=69.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCC--HHHHHHHHHHhhcCChHHHHHHHHH
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD----LVLNNKVIEMYGKCGS--MTDARRVFDHMADRSMDSWHLMING 352 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~~y~~Li~~y~k~g~--~~~A~~lf~~m~~~~~~tyn~Li~~ 352 (623)
....+|.-|...|++++|...++++.. |+ ..++..+..++ ..++ .+.+..++..+...++.+-..+..|
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aL-er~~~~re~~~~LL~~L~~~~~ls~~~~~~G 88 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSL-DRSDEDKEKASSLISLLKQEGIATSDNFMQA 88 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 355677777777788888777777632 32 23333333333 2222 2334445555555555555555555
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHH
Q 044791 353 YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACG-SADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLF 431 (623)
Q Consensus 353 ~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~-~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e 431 (623)
+.+ .++.+.++.-. .|.+..|..-+-+-+ ..|-+. . ..+...... |..- ..+..++..+.+....+
T Consensus 89 f~~------lle~l~Dl~iD--iP~a~~~la~f~ar~i~~~~l~-~-~~l~~~l~~-G~~~--~l~l~vl~~~~k~~G~~ 155 (364)
T 3l6a_A 89 FLN------VLDQCPKLEVD--IPLVKSYLAQFAARAIISELVS-I-SELAQPLES-GTHF--PLFLLCLQQLAKLQDRE 155 (364)
T ss_dssp HHH------HHHTHHHHHHH--CTTHHHHHHHHHHHHHHTTSSC-H-HHHHHHHGG-GTTT--THHHHHHHHHHHHSCHH
T ss_pred HHH------HHhhChHhccc--cccHHHHHHHHHHHHHHcCCCC-H-HHHHHHhcc-cchH--HHHHHHHHHHHHhcCHH
Confidence 433 22223333322 466666654443322 222211 1 112222323 3221 23334456677777777
Q ss_pred HHHHHHHh
Q 044791 432 EAQQFIEQ 439 (623)
Q Consensus 432 ~A~~lf~~ 439 (623)
....+|++
T Consensus 156 ~l~~l~~~ 163 (364)
T 3l6a_A 156 WLTELFQQ 163 (364)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77888877
No 329
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=30.88 E-value=1.4e+02 Score=29.56 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcCChH---HHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCC
Q 044791 314 LNNKVIEMYGKCGSMTDARRVFDHMADRSMD---SWHLMINGYADNGL--GDEGLQLFEQMRKLGLQP 376 (623)
Q Consensus 314 ~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~---tyn~Li~~~~~~g~--~eeA~~l~~eM~~~g~~P 376 (623)
....++.-|...|+.++|.+.++++..+... .+.++..++-+.++ .+.+..++..+.+.|+-+
T Consensus 168 ki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls 235 (307)
T 2zu6_B 168 EIDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTIT 235 (307)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCC
Confidence 3456777777788888888888888655322 45555555554432 345667777777666543
No 330
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=29.61 E-value=1.9e+02 Score=25.55 Aligned_cols=46 Identities=7% Similarity=0.138 Sum_probs=22.9
Q ss_pred HHHHHHHhhcCChH-----HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 044791 331 ARRVFDHMADRSMD-----SWHLMINGYADNGLGDEGLQLFEQMRKLGLQP 376 (623)
Q Consensus 331 A~~lf~~m~~~~~~-----tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P 376 (623)
+..+|..|...++- -|-.-...+-..|++++|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 45555555443322 34444444555555555555555555554444
No 331
>1dm5_A Annexin XII E105K mutant homohexamer; novel PH-dependent hexamerization switch E76, low calcium form; 1.93A {Hydra vulgaris} SCOP: a.65.1.1 PDB: 1aei_A
Probab=29.39 E-value=4.2e+02 Score=26.08 Aligned_cols=149 Identities=8% Similarity=0.092 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHhhcCChH---------HHHHHHHHHHHcCChHHH
Q 044791 294 ENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS--MTDARRVFDHMADRSMD---------SWHLMINGYADNGLGDEG 362 (623)
Q Consensus 294 ~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~--~~~A~~lf~~m~~~~~~---------tyn~Li~~~~~~g~~eeA 362 (623)
.+|..+.+-|...| .|. ..||..++.... ..+..+.|..+-..+.. .|-.++.+++..--..+|
T Consensus 16 ~DA~~L~~A~kG~G--tde---~~lieIL~~rs~~q~~~I~~~Y~~~yg~~L~~dl~se~sG~f~~ll~~l~~~~~~~dA 90 (315)
T 1dm5_A 16 EDAETLRKAMKGIG--TDE---KSITHILATRSNAQRQQIKTDYTTLFGKHLEDELKSELSGNYEAAALALLRKPDEFLA 90 (315)
T ss_dssp HHHHHHHHHHSSSS--CCH---HHHHHHHHHSCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhcCCC--CCH---HHHHHHHhcCCHHHHHHHHHHHHHHHCCCHHHHHHhhcCccHHHHHHHHccChhHHHH
Confidence 34556665554333 343 345555555432 33444555555444333 466666666654445667
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-------CccchhhHHHHHHhcCCH-----
Q 044791 363 LQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-------GTEHYLGLVGVLGKCGHL----- 430 (623)
Q Consensus 363 ~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-------~~~ty~~Li~~~~k~g~~----- 430 (623)
..+++.|+.. ..|..++.-++ +. ....+-..+++.....+|... ....|..++-+++++.+.
T Consensus 91 ~~L~~A~kg~--Gtde~~lieIL---~t-Rs~~ql~~i~~~Y~~~yg~~Le~dI~~e~sG~~~~~L~~lv~~~r~~~~~v 164 (315)
T 1dm5_A 91 EQLHAAMKGL--GTDKNALIDIL---CT-QSNAQIHAIKAAFKLLYKEDLEKEIISETSGNFQRLLVSMLQGGRKEDEPV 164 (315)
T ss_dssp HHHHHHHHSS--SCCHHHHHHHH---SS-CCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHTTCCCTTCCC
T ss_pred HHHHHHhhcC--CCchhhhhhhH---hc-CCHHHHHHHHHHHHHHhCccHHHHHHhccCchHHHHHHHHHccccCCCCCC
Confidence 7777777543 34665544433 32 222223333332222223221 112344555566655432
Q ss_pred ------HHHHHHHHhhCC--CCCCHHHHHHHH
Q 044791 431 ------FEAQQFIEQKLP--FEPTAEFWEALR 454 (623)
Q Consensus 431 ------e~A~~lf~~~m~--~~Pd~~ty~~Li 454 (623)
.+|..+++. |+ ...|..++..++
T Consensus 165 d~~~a~~dA~~L~~A-~~~~~GTde~~lirIl 195 (315)
T 1dm5_A 165 NAAHAAEDAAAIYQA-GEGQIGTDESRFNAVL 195 (315)
T ss_dssp CHHHHHHHHHHHHHH-TTTSSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH-hhCcCCCcHHHHHHHH
Confidence 457777777 64 345655444333
No 332
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=29.37 E-value=1e+02 Score=27.73 Aligned_cols=27 Identities=15% Similarity=0.207 Sum_probs=19.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCH
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADA 277 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~ 277 (623)
+.+...++.|+.+.+..+++.|..++.
T Consensus 27 t~L~~A~~~g~~~~v~~Ll~~g~~~~~ 53 (223)
T 2f8y_A 27 TALHLAARYSRSDAAKRLLEASADANI 53 (223)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred chHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence 556666778888887777777766543
No 333
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=28.74 E-value=21 Score=33.71 Aligned_cols=21 Identities=10% Similarity=0.003 Sum_probs=10.5
Q ss_pred hCCCCHHHHHHHHHHHHHcCC
Q 044791 288 GNPKWYENAKKVHDYFLQSTI 308 (623)
Q Consensus 288 ~~~g~~~~A~~l~~~m~~~g~ 308 (623)
++.|+.+.+..+++.+++.|.
T Consensus 10 ~~~g~~~~v~~ll~~l~~~g~ 30 (256)
T 2etb_A 10 VSRGVPEELTGLLEYLRWNSK 30 (256)
T ss_dssp HHHTCGGGGTTHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHHcCC
Confidence 344555555555555554444
No 334
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=27.24 E-value=87 Score=30.07 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=27.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCH---HHHHHHHHHHhCCCCHHHHH
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADA---SCFYTLFELCGNPKWYENAK 297 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~---~ty~~Ll~~~~~~g~~~~A~ 297 (623)
+.+...+..|+.+.+..+++.|..++. .-++.| ...+..|+.+-+.
T Consensus 61 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~g~~~~v~ 109 (285)
T 3d9h_A 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPL-HEACLGGHLSCVK 109 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHH-HHHHHTTCHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH-HHHHHCCcHHHHH
Confidence 456667888999888888887766543 122333 3334456654433
No 335
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=26.68 E-value=5.2e+02 Score=26.31 Aligned_cols=30 Identities=7% Similarity=-0.139 Sum_probs=17.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 377 NEQTFLAVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 377 d~~ty~~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
+..--..++.+++...+.+...++++....
T Consensus 266 ~~~ek~~ll~aL~~s~d~~ll~~~L~~~l~ 295 (419)
T 3rjo_A 266 SSTEKSQIEFALCRTQNKEKLQWLLDESFK 295 (419)
T ss_dssp CHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHHHhC
Confidence 334445566666666666666666655553
No 336
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=26.62 E-value=43 Score=33.85 Aligned_cols=143 Identities=10% Similarity=0.000 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHcCCCCC---HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 044791 248 PSVADLARLCQEGKVKEAIELMDKGVKAD---ASCFYTLFELCGNPK-WYENAKKVHDYFLQSTIRGDLVLNNKVIEMYG 323 (623)
Q Consensus 248 ~~~~li~~~~~~g~~~~A~~l~~~~~~pd---~~ty~~Ll~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~ 323 (623)
....+|.-|...|++++|...+++--.|. ...+..+..++-+.. .-+.+..++..+.+.|+-. -..+..+|.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is----~~~~~~Gf~ 88 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLS----TAQYYQGLY 88 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSC----HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCC----HHHHHHHHH
Confidence 45678888999999999999998754453 123333333443322 2344556666666655432 333344432
Q ss_pred HcCCHHHHHHHHHHhhc--CChHHHHHHHHH-HHHcCChH--HH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044791 324 KCGSMTDARRVFDHMAD--RSMDSWHLMING-YADNGLGD--EG-LQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEA 397 (623)
Q Consensus 324 k~g~~~~A~~lf~~m~~--~~~~tyn~Li~~-~~~~g~~e--eA-~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A 397 (623)
+..+.++.+.- |....|-..+-+ +...|-.. +. ..+++.+...|. .......++..+++....+.+
T Consensus 89 ------~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~--~~~fl~~vl~~l~~~~g~~~l 160 (339)
T 1ug3_A 89 ------EILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGK--AASLLLEILGLLCKSMGPKKV 160 (339)
T ss_dssp ------HHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTC--HHHHHHHHHHHHHHHHCHHHH
T ss_pred ------HHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccch--HHHHHHHHHHHHHHHcCHHHH
Confidence 22233333321 222232222222 22234332 11 123333444442 234455566667766677777
Q ss_pred HHHHH
Q 044791 398 FIHFE 402 (623)
Q Consensus 398 ~~l~~ 402 (623)
..+|.
T Consensus 161 ~~~~~ 165 (339)
T 1ug3_A 161 GTLWR 165 (339)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77775
No 337
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=25.76 E-value=2.7e+02 Score=26.24 Aligned_cols=69 Identities=9% Similarity=0.166 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcCCh
Q 044791 272 GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRG-DLVLNNKVIEMYGKCGSMTDARRVFDHMADRSM 343 (623)
Q Consensus 272 ~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~ 343 (623)
..+-|..-....|...-. .+++.++|..|...|+-- -+.-|-.....|-..|++.+|.+||+.-.+...
T Consensus 112 rYknD~RyLklWl~Ya~~---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 181 (223)
T 4aez_C 112 LYKDDVRYLRIWMQYVNY---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKA 181 (223)
T ss_dssp GGTTCHHHHHHHHHHHTT---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred cccCCHHHHHHHHHHHHc---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 445555433333332221 245667777777766543 356666777777777777777777776554443
No 338
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=25.69 E-value=63 Score=29.30 Aligned_cols=176 Identities=11% Similarity=0.085 Sum_probs=86.0
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHhh-c---CChHHHHHHHHHHHHc
Q 044791 283 LFELCGNPKWYENAKKVHDYFLQSTIRGDLVL--NNKVIEMYGKCGSMTDARRVFDHMA-D---RSMDSWHLMINGYADN 356 (623)
Q Consensus 283 Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~--y~~Li~~y~k~g~~~~A~~lf~~m~-~---~~~~tyn~Li~~~~~~ 356 (623)
.+...+..|+.+.+.. +++.|..++... -.+.+...+..|+.+-+..+++.-. . .+...++.|..+ +..
T Consensus 28 ~L~~A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A-~~~ 102 (223)
T 2f8y_A 28 ALHLAARYSRSDAAKR----LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILA-ARL 102 (223)
T ss_dssp HHHHHHHTTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHH-HHH
T ss_pred hHHHHHHcCCHHHHHH----HHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHH-HHh
Confidence 3444456677654444 444555443211 1234555677788877777665432 1 122233333333 445
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCcc--chhhHHHHHHhcCCHHH
Q 044791 357 GLGDEGLQLFEQMRKLGLQPNEQT--FLAVFSACGSADAIEEAFIHFESMKSEFGISPGTE--HYLGLVGVLGKCGHLFE 432 (623)
Q Consensus 357 g~~eeA~~l~~eM~~~g~~Pd~~t--y~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~--ty~~Li~~~~k~g~~e~ 432 (623)
|..+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++ . |..++.. .-.+.+...++.|..+-
T Consensus 103 ~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~----~-g~~~~~~~~~g~t~L~~A~~~~~~~~ 173 (223)
T 2f8y_A 103 AVEG----MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK----N-GANKDMQNNREETPLFLAAREGSYET 173 (223)
T ss_dssp TCHH----HHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH----T-TCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred CcHH----HHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHH----c-CCCCCCcCCCCcCHHHHHHHcCCHHH
Confidence 5544 4444455666554321 1233445556777665554443 3 5555432 12244555677888887
Q ss_pred HHHHHHhhCCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcC
Q 044791 433 AQQFIEQKLPF-EPTAEFWEALRNYARIHGDIDLEDHAEELMVDLD 477 (623)
Q Consensus 433 A~~lf~~~m~~-~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~ 477 (623)
+..+++..... ..|..- .+.+...+..|..+ +.+.+.+..
T Consensus 174 v~~Ll~~ga~~~~~~~~g-~t~l~~A~~~~~~~----i~~~L~~~g 214 (223)
T 2f8y_A 174 AKVLLDHFANRDITDHMD-RLPRDIAQERMHHD----IVRLLDEYN 214 (223)
T ss_dssp HHHHHHTTCCTTCCCTTC-CCHHHHHHHTTCHH----HHHHHHHTT
T ss_pred HHHHHHcCCCCccccccC-CCHHHHHHHhcchH----HHHHHHHcC
Confidence 77777661111 011111 12233445667764 555555543
No 339
>1yii_A Annexin A5, annexin V, lipocortin V, endonexin II; membrane binding, matrix vessicle, protein and metal binding protein; 1.42A {Gallus gallus} PDB: 1yj0_A 1ala_A 1hvd_A 1anx_A 1anw_A 1avh_A 1avr_A 1hak_B* 1hvf_A 1hve_A 1hvg_A 1a8a_A* 1a8b_A* 2ie7_A 1g5n_A 2ie6_A 1bcz_A 1n41_A 1bcw_A 2ran_A ...
Probab=25.67 E-value=4.9e+02 Score=25.63 Aligned_cols=215 Identities=9% Similarity=0.058 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHhhcCChH---------HHHHHHHHHHHcCChHHH
Q 044791 294 ENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGS--MTDARRVFDHMADRSMD---------SWHLMINGYADNGLGDEG 362 (623)
Q Consensus 294 ~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~--~~~A~~lf~~m~~~~~~---------tyn~Li~~~~~~g~~eeA 362 (623)
.+|..+.+-|...|.. -..||..++.... ..+-...|..+-.++.. .|-.++.+++..-.-..|
T Consensus 18 ~Da~~L~~A~kG~Gtd-----e~~lieIL~~rs~~q~~~I~~~Y~~~~g~~L~~dl~~e~sG~f~~ll~~l~~~~~~~DA 92 (320)
T 1yii_A 18 ADAEALRKAMKGMGTD-----EETILKILTSRNNAQRQEIASAFKTLFGRDLVDDLKSELTGKFETLMVSLMRPARIFDA 92 (320)
T ss_dssp HHHHHHHHHHSSSSCC-----HHHHHHHHHHSCHHHHHHHHHHHHHHHSCCHHHHHHHHCCHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhcCCCCC-----HHHHHHHHhcCCHHHHHHHHHHHHHHHCcCHHHHHhhhcCchHHHHHHHHccChHHHHH
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-------CccchhhHHHHHHhcCC------
Q 044791 363 LQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISP-------GTEHYLGLVGVLGKCGH------ 429 (623)
Q Consensus 363 ~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p-------~~~ty~~Li~~~~k~g~------ 429 (623)
..+.+.| .|...|..++.-++.. ...++-..+.+.....+|... ....|..++-+++.+.+
T Consensus 93 ~~L~~A~--kg~Gtde~~lieIL~~----Rs~~ql~~I~~aY~~~y~~~Le~di~~e~sG~~~~~l~~l~~~~r~~~~~v 166 (320)
T 1yii_A 93 HALKHAI--KGAGTNEKVLTEILAS----RTPAEVQNIKQVYMQEYEANLEDKITGETSGHFQRLLVVLLQANRDPDGRV 166 (320)
T ss_dssp HHHHHHH--SSSSCCHHHHHHHHHH----SCHHHHHHHHHHHHHHHSSCHHHHHHHHCCHHHHHHHHHHHTTCCCCSCCC
T ss_pred HHHHHHh--ccCCCchHHHhHHHhc----CCHHHHHHHHHHHHHhhCcCHHHHHHhhcCCcHHHHHHHHHhhccCccccC
Q ss_pred -----HHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCCCCCCCCCCCCCCchhhHHHHhhhc
Q 044791 430 -----LFEAQQFIEQKL-PFEPTAEFWEALRNYARIHGDIDLEDHAEELMVDLDPSKADPKKIPTPPPKKRTAISILDGK 503 (623)
Q Consensus 430 -----~e~A~~lf~~~m-~~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~~~~~~~~~~~~p~~~t~~~li~~~ 503 (623)
-.+|..+++.+. +...|..++..++.. ........+.+.+.++..............=+.......|-.|
T Consensus 167 d~~~a~~dA~~L~~A~~~~~Gtde~~li~Il~t----Rs~~~L~~i~~~Y~~~~g~~L~~~I~~e~sGd~~~~Llalv~~ 242 (320)
T 1yii_A 167 DEALVEKDAQVLFRAGELKWGTDEETFITILGT----RSVSHLRRVFDKYMTISGFQIEETIDRETSGDLEKLLLAVVKC 242 (320)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCSSHHHHHHHHHH----SCHHHHHHHHHHHHHHHSSCHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh----CCHHHHHHHHHHHHHHHCcCHHHHHhhhcCchHHHHHHHHHHh
Q ss_pred CccccccCCcccchHHHHHHHHHHHHCC
Q 044791 504 SRLVEFRNPTLYRDDEKLKALNQMKEST 531 (623)
Q Consensus 504 ~~~~~~~~~~~~~~~eal~~~~~M~~~G 531 (623)
.+.... -.|..+.+.|+..|
T Consensus 243 ~~~~~~--------~~A~~L~~a~~g~G 262 (320)
T 1yii_A 243 IRSVPA--------YFAETLYYSMKGAG 262 (320)
T ss_dssp HHCHHH--------HHHHHHHHHHSSSS
T ss_pred ccCCcH--------HHHHHHHHhhccCC
No 340
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Probab=25.66 E-value=5.2e+02 Score=25.89 Aligned_cols=182 Identities=10% Similarity=0.095 Sum_probs=98.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHhhcCChH---------HHH
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG--SMTDARRVFDHMADRSMD---------SWH 347 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g--~~~~A~~lf~~m~~~~~~---------tyn 347 (623)
.|-.++.++...--..+|..+.+-|...| .| ...||..+|... ++....+.|..+-.++.. .|.
T Consensus 103 ~fe~~l~~l~~~p~~~DA~~L~~AmkG~G--Td---e~~LieIL~~Rsn~q~~~Ik~aY~~~y~~~Le~di~se~sG~f~ 177 (346)
T 1hm6_A 103 HLEEVALALLKTPAQFDADELRAAMKGLG--TD---EDTLNEILASRTNREIREINRVYKEELKRDLAKDITSDTSGDYQ 177 (346)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHSSSC--CC---HHHHHHHHHHSCHHHHHHHHHHHHHTSCCCHHHHHHHHCCHHHH
T ss_pred cHHHHHHHHhCCcHHHHHHHHHHHhhccC--CC---HHHHHHHHhcCCHHHHHHHHHHHHHHhchhHHHHHhhccCCcHH
Confidence 46666666666555567888888886655 35 345777777654 355666777777655443 577
Q ss_pred HHHHHHHHcCCh-----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCC--c
Q 044791 348 LMINGYADNGLG-----------DEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPG--T 414 (623)
Q Consensus 348 ~Li~~~~~~g~~-----------eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~--~ 414 (623)
.++.+++...+. .+|..+++.|. .+...|..++..++.. ....+-..+++.....+|.... +
T Consensus 178 ~ll~~L~~~~R~e~~~vd~~~a~~DA~~L~~A~~-~~~Gtde~~li~IL~t----RS~~~L~~i~~~Y~~~~g~~Le~~I 252 (346)
T 1hm6_A 178 KALLSLAKGDRSEDLAINDDLADTDARALYEAGE-RRKGTDLNVFITILTT----RSYPHLRRVFQKYSKYSKHDMNKVL 252 (346)
T ss_dssp HHHHHHHTTCCCCCCSCCHHHHHHHHHHHHHHTT-TSSSCCHHHHHHHHHH----SCHHHHHHHHHHHHTTCCCCTTSBC
T ss_pred HHHHHHhhccccccCCCCchHHHHHHHHHHHHHh-ccCCCcHHHHHHHHhc----CCHHHHHHHHHHHHHHHCcCHHHHH
Confidence 788888775542 25666666553 3345687777666644 3344555555555554454332 1
Q ss_pred c-----chhhHHHHHHh---cCCHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 044791 415 E-----HYLGLVGVLGK---CGHLFEAQQFIEQKLP-FEPTAEFWEALRNYARIHGDIDLEDHAEELMVD 475 (623)
Q Consensus 415 ~-----ty~~Li~~~~k---~g~~e~A~~lf~~~m~-~~Pd~~ty~~Li~a~~~~g~~~~A~~~~~~~~~ 475 (623)
. .+..++.++++ ......|..+++. |+ ...|..+ |++.++.....+ ...+.+.+.+
T Consensus 253 ~~e~sG~~~~~L~~lv~~~r~~~~~~A~~L~~A-~~g~GTde~~---lirIlvsRs~~d-L~~I~~~Y~~ 317 (346)
T 1hm6_A 253 DLELKGDIENCLTVVVKCATSKPMFFAEKLHQA-MKGIGTRHKT---LIRIMVSRSEID-MNDIKACYQK 317 (346)
T ss_dssp CCCCBHHHHHHHHHHHHHHHCHHHHHHHHHHHH-HSSSSCCHHH---HHHHHHHTTTTT-HHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHhhcCCccHHHHHHHHHH-hcCCCCCHHH---HhHHHhhCCHHH-HHHHHHHHHH
Confidence 1 12222223222 1122347777777 54 4446554 444444333332 2244444444
No 341
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=25.30 E-value=2.4e+02 Score=27.94 Aligned_cols=97 Identities=15% Similarity=0.087 Sum_probs=65.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHH----HHhcCCHHHHHHHHHh
Q 044791 364 QLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGV----LGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 364 ~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~----~~k~g~~e~A~~lf~~ 439 (623)
+++..+.+.|+.|..+++.-++..+++.=.++.+.++|+.+... |...-.....+++.. +.++.++++.+.++..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~-g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQ-GTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHH-CTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHC-CcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 56777788899999999999999998888899999999999976 654211111222222 3345689999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCC
Q 044791 440 KLPFEPTAEFWEALRNYARIHGD 462 (623)
Q Consensus 440 ~m~~~Pd~~ty~~Li~a~~~~g~ 462 (623)
.+. ..+......++.-......
T Consensus 288 ~~p-~~~~~di~~li~~A~~l~~ 309 (331)
T 3qye_A 288 TLP-NLGLVQMEKTINQVFEMDI 309 (331)
T ss_dssp TTT-CCCHHHHHHHHHHHHHCCC
T ss_pred hCC-CCCHHHHHHHHHHHHhCCc
Confidence 233 2344555566654444433
No 342
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.91 E-value=41 Score=31.65 Aligned_cols=53 Identities=9% Similarity=-0.043 Sum_probs=28.3
Q ss_pred HHHHHHHHcCCHHHHHHHHH----cCCCCCHH-------HHHHHHHHHh--CCCCHHHHHHHHHHH
Q 044791 251 ADLARLCQEGKVKEAIELMD----KGVKADAS-------CFYTLFELCG--NPKWYENAKKVHDYF 303 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~----~~~~pd~~-------ty~~Ll~~~~--~~g~~~~A~~l~~~m 303 (623)
..|...++.|+.+....+++ .+..++.. -.+.|..+.. +.|+.+-+..+++.-
T Consensus 7 ~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 34555667777776555554 45444422 2344444442 556666666665554
No 343
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=24.66 E-value=57 Score=31.42 Aligned_cols=19 Identities=11% Similarity=-0.118 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCHHHHHHHH
Q 044791 251 ADLARLCQEGKVKEAIELM 269 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~ 269 (623)
+.+...+..|+.++..++.
T Consensus 17 ~~lH~Aa~~g~~~~~~~~~ 35 (285)
T 3d9h_A 17 RGSHMASMDGKQGGMDGSK 35 (285)
T ss_dssp -------------------
T ss_pred HHHHHHhhcCCCCCcccCC
Confidence 4555556666666665543
No 344
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=24.51 E-value=3.7e+02 Score=23.86 Aligned_cols=70 Identities=11% Similarity=0.092 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHhhcCChH
Q 044791 272 GVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGD-LVLNNKVIEMYGKCGSMTDARRVFDHMADRSMD 344 (623)
Q Consensus 272 ~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~~y~~Li~~y~k~g~~~~A~~lf~~m~~~~~~ 344 (623)
..+-|..-....|...-.. +.+.++|..|...|+--. +.-|-.....+-..|++.+|.+||..-.+.+..
T Consensus 58 ~YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~ 128 (164)
T 2wvi_A 58 RYYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAE 128 (164)
T ss_dssp GGTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred hhccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 4556664433333222111 336677888877765433 566777777777788888888888776655443
No 345
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=24.33 E-value=37 Score=31.04 Aligned_cols=20 Identities=25% Similarity=0.421 Sum_probs=11.8
Q ss_pred HHHHHHcCCHHHHHHHHHcC
Q 044791 253 LARLCQEGKVKEAIELMDKG 272 (623)
Q Consensus 253 i~~~~~~g~~~~A~~l~~~~ 272 (623)
+...++.|+.+.+..+++.+
T Consensus 6 L~~A~~~g~~~~v~~Ll~~~ 25 (228)
T 2dzn_A 6 LHQACMENEFFKVQELLHSK 25 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHhCCHHHHHHHHhcC
Confidence 44455666666666666543
No 346
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=24.14 E-value=18 Score=31.60 Aligned_cols=9 Identities=22% Similarity=0.394 Sum_probs=3.9
Q ss_pred eeeehhccc
Q 044791 44 TLSLAKTLS 52 (623)
Q Consensus 44 ~~~~~~~~~ 52 (623)
+|.|-+-|.
T Consensus 97 ILLFRRpl~ 105 (150)
T 1qb3_A 97 ILLFKRPLN 105 (150)
T ss_dssp EEEEEEETT
T ss_pred EEEecCCCC
Confidence 444444443
No 347
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=23.98 E-value=2.4e+02 Score=25.12 Aligned_cols=47 Identities=6% Similarity=0.101 Sum_probs=26.4
Q ss_pred HHHHHHHhhcCChH-----HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 044791 331 ARRVFDHMADRSMD-----SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPN 377 (623)
Q Consensus 331 A~~lf~~m~~~~~~-----tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd 377 (623)
+..+|..|...++- -|-.-...+-..|++.+|.++|..-++.+-.|-
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 55556666544332 344445555556666666666666666655553
No 348
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=23.65 E-value=9.2e+02 Score=28.09 Aligned_cols=56 Identities=7% Similarity=-0.048 Sum_probs=29.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCGSMTDARRVFDHMAD 340 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g~~~~A~~lf~~m~~ 340 (623)
.|..|+..+ +.-+.++-.++++++.. ....-..+++++..+|-.+...-+.+.+..
T Consensus 312 ~f~~Lv~~l-R~~~~e~L~~l~~~~~~-----~~~~r~~~lDal~~aGT~~a~~~i~~~i~~ 367 (1056)
T 1lsh_A 312 KFLRLTAFL-RNVDAGVLQSIWHKLHQ-----QKDYRRWILDAVPAMATSEALLFLKRTLAS 367 (1056)
T ss_dssp HHHHHHHHH-TTSCHHHHHHHHHHHTT-----SHHHHHHHHHHHHHHCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHhc-----cHHHHHHHHHHhHhcCCHHHHHHHHHHHHc
Confidence 355555443 33445666666666542 122333466666666666555555555443
No 349
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=23.65 E-value=1.6e+02 Score=24.44 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=12.5
Q ss_pred HHHHcCCHHHHHHHHHHhh
Q 044791 321 MYGKCGSMTDARRVFDHMA 339 (623)
Q Consensus 321 ~y~k~g~~~~A~~lf~~m~ 339 (623)
-.++.|++++|.+.+++..
T Consensus 31 ~~Ak~gdfe~A~~~l~eA~ 49 (109)
T 3k1s_A 31 QFAKQGKMAEADEAMVKAK 49 (109)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH
Confidence 3456677777777776654
No 350
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=22.69 E-value=4.3e+02 Score=25.19 Aligned_cols=215 Identities=11% Similarity=0.031 Sum_probs=102.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCHH---HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHc
Q 044791 251 ADLARLCQEGKVKEAIELMDKGVKADAS---CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVL--NNKVIEMYGKC 325 (623)
Q Consensus 251 ~li~~~~~~g~~~~A~~l~~~~~~pd~~---ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~--y~~Li~~y~k~ 325 (623)
+.+...+..|+.+-+..+++.|..++.. -++.|. ..+..|+.+ +++.+++.|..++... -.+.+...+..
T Consensus 60 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~g~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 134 (351)
T 3utm_A 60 TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLH-NACSYGHYE----VTELLLKHGACVNAMDLWQFTPLHEAASK 134 (351)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH-HHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHH-HHHHCCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence 4566677889999888888887665432 233333 344556655 4444555565543211 11345555678
Q ss_pred CCHHHHHHHHHHhhcCChH-----------------------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 044791 326 GSMTDARRVFDHMADRSMD-----------------------SWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQTFL 382 (623)
Q Consensus 326 g~~~~A~~lf~~m~~~~~~-----------------------tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~ 382 (623)
|+.+-+..+++.-...+.. ....-+...+..+..+....++..-.. ....+..-.+
T Consensus 135 ~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~t 213 (351)
T 3utm_A 135 NRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII-NFKQPQSHET 213 (351)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCT-TCCCTTTCCC
T ss_pred CCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcc-cccCCCCCCC
Confidence 8888777777653322110 011112223444554444443322110 0111111112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccc--hhhHHHHHHhcCCHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHH
Q 044791 383 AVFSACGSADAIEEAFIHFESMKSEFGISPGTEH--YLGLVGVLGKCGHLFEAQQFIEQKLPF-EPTAEFWEALRNYARI 459 (623)
Q Consensus 383 ~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~t--y~~Li~~~~k~g~~e~A~~lf~~~m~~-~Pd~~ty~~Li~a~~~ 459 (623)
.+ ...+..+.. .-.++++.+.+. |..++... -.+.+...++.|+.+-+.-+++....+ ..|..-.+.|. ..+.
T Consensus 214 ~L-~~A~~~~~~-~~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~-~A~~ 289 (351)
T 3utm_A 214 AL-HCAVASLHP-KRKQVAELLLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALH-RAAL 289 (351)
T ss_dssp HH-HHHHHCCST-THHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH-HHHH
T ss_pred HH-HHHHHHhCc-cHHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH-HHHH
Confidence 22 222333211 112344444433 66554332 234566677889987777777652111 12222223333 3345
Q ss_pred cCChhHHHHHHHHHHhcCCC
Q 044791 460 HGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 460 ~g~~~~A~~~~~~~~~m~~~ 479 (623)
.|+.+ +.+.+.+.+.+
T Consensus 290 ~~~~~----~v~~Ll~~gad 305 (351)
T 3utm_A 290 AGHLQ----TCRLLLSYGSD 305 (351)
T ss_dssp HTCHH----HHHHHHHTTCC
T ss_pred cCcHH----HHHHHHHcCCC
Confidence 67774 56666665443
No 351
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=22.58 E-value=57 Score=30.59 Aligned_cols=164 Identities=10% Similarity=0.098 Sum_probs=70.7
Q ss_pred CHHHHHHHHHcCCCCC----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCCHHHHHHH
Q 044791 261 KVKEAIELMDKGVKAD----ASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVL--NNKVIEMYGKCGSMTDARRV 334 (623)
Q Consensus 261 ~~~~A~~l~~~~~~pd----~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~--y~~Li~~y~k~g~~~~A~~l 334 (623)
..+....+++.|..++ ..-++. +...+..|+.+-+. .+++.|..++... -.+.+...+..|+.+-+..+
T Consensus 35 ~~~~v~~Ll~~g~~~~~~~d~~g~t~-L~~A~~~g~~~~v~----~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 109 (253)
T 1yyh_A 35 APAVISDFIYQGASLHNQTDRTGETA-LHLAARYSRSDAAK----RLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL 109 (253)
T ss_dssp -----------------CCCTTSCCH-HHHHHHTTCHHHHH----HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred ChHHHHHHHHccCCcccccCCCCCcH-HHHHHHcCCHHHHH----HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 4444444555544332 222333 33444566665444 3444555443211 11334455566777766666
Q ss_pred HHHhh-c---CChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 044791 335 FDHMA-D---RSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQPNEQT--FLAVFSACGSADAIEEAFIHFESMKSEF 408 (623)
Q Consensus 335 f~~m~-~---~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~Pd~~t--y~~li~a~~~~g~~e~A~~l~~~m~~~~ 408 (623)
++.-. . .+...++.|..+ +..|..+ +++.+.+.|..++... -.+.+...+..|..+-+..+++ .
T Consensus 110 l~~~~~~~~~~~~~g~t~L~~A-~~~~~~~----~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~----~- 179 (253)
T 1yyh_A 110 IRNRATDLDARMHDGTTPLILA-ARLAVEG----MLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK----N- 179 (253)
T ss_dssp HHSTTSCTTCCCTTCCCHHHHH-HHHTCSS----HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH----T-
T ss_pred HHcCCCCccccCCCCCcHHHHH-HHcChHH----HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH----c-
Confidence 55332 1 122233333333 3445544 3444445665554321 1233444455677665444442 2
Q ss_pred CCCCCccc--hhhHHHHHHhcCCHHHHHHHHHh
Q 044791 409 GISPGTEH--YLGLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 409 g~~p~~~t--y~~Li~~~~k~g~~e~A~~lf~~ 439 (623)
|..++... -.+-+...++.|..+-+..+++.
T Consensus 180 ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 212 (253)
T 1yyh_A 180 GANKDMQNNREETPLFLAAREGSYETAKVLLDH 212 (253)
T ss_dssp TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 55554322 23445556677888777766665
No 352
>1u60_A Probable glutaminase YBAS; structural genomics, APC5046, PSI, protein structure initiat midwest center for structural genomics, MCSG; 1.61A {Escherichia coli} SCOP: e.3.1.2
Probab=22.25 E-value=53 Score=32.76 Aligned_cols=148 Identities=12% Similarity=0.106 Sum_probs=71.7
Q ss_pred CCCCCccchhhHHHHHHhcCCHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCC-hhHHHHHHHHHHhcCCCCCCC
Q 044791 409 GISPGTEHYLGLVGVLGKCGHLFEAQQFIEQKLPFEPTA----EFWEALRNYARIHGD-IDLEDHAEELMVDLDPSKADP 483 (623)
Q Consensus 409 g~~p~~~ty~~Li~~~~k~g~~e~A~~lf~~~m~~~Pd~----~ty~~Li~a~~~~g~-~~~A~~~~~~~~~m~~~~~~~ 483 (623)
|.+|+-..||.|+..=...|+ ...|=+ .+-..||. .+. .+...++++.++++.-+.+.
T Consensus 90 G~EPSG~~FNSi~~Le~~~g~------------P~NPmINAGAI~~~sll~----~~~~~~~~~~il~~~~~lag~~l~- 152 (310)
T 1u60_A 90 GADPTGLPFNSVIALELHGGK------------PLSPLVNAGAIATTSLIN----AENVEQRWQRILHIQQQLAGEQVA- 152 (310)
T ss_dssp CSCCCSSCTTCHHHHHHTTTC------------CCCTTSHHHHHHHHHHSC----CSSHHHHHHHHHHHHHHHHCTTCE-
T ss_pred CCCCCCCCCcchhhhhccCCC------------cCCccccHHHHHHHHhcc----CCCcHHHHHHHHHHHHHHhCCCCc-
Confidence 899999999998744322222 122211 22222221 111 23333566666666544333
Q ss_pred CCCCCCCCchhhHHHHhhhcCccccccCCcccchHHHHHHHHHHHHCCcccCcceeeeccCHHHHHHHHHHHHhHHHHHH
Q 044791 484 KKIPTPPPKKRTAISILDGKSRLVEFRNPTLYRDDEKLKALNQMKESTYVPDTRYVLHDIDQEAKEQALLYHSERLAIAY 563 (623)
Q Consensus 484 ~~~~~~~p~~~t~~~li~~~~~~~~~~~~~~~~~~eal~~~~~M~~~Gi~Pd~~t~~~li~~~~k~~~~~~~~g~l~~A~ 563 (623)
.|...|.+-.+.-. + ..|+.+| |+..|.-++.. ...++-+.+...+......+..+-
T Consensus 153 -------~d~~v~~SE~~t~~---r---------N~AiA~~--lks~g~i~~dv--~~~Ld~Yf~qCSi~vt~~dLA~~~ 209 (310)
T 1u60_A 153 -------LSDEVNQSEQTTNF---H---------NRAIAWL--LYSAGYLYCDA--MEACDVYTRQCSTLLNTIELATLG 209 (310)
T ss_dssp -------ECHHHHHHHHTTCH---H---------HHHHHHH--HHHHTCCCSCH--HHHHHHHHHHTTEEECHHHHHHHH
T ss_pred -------cCHHHHHHHHhhhH---H---------HHHHHHH--HHHCCCCCCCH--HHHHHHHHHHhcccccHHHHHHHH
Confidence 66777765554211 1 3667666 88888766331 112221111111122233444433
Q ss_pred hcccCCC-----------CChhH-HHhhHhhhcchhHHHHHHHHH
Q 044791 564 GLISTPA-----------RTPLR-IIKNLRVCGDCHNAIKIMSRI 596 (623)
Q Consensus 564 ~ll~~m~-----------~~~~~-i~~~l~~~g~~~~a~~l~~~~ 596 (623)
.+|-.-- ....+ +...+.-||-++.+-++..++
T Consensus 210 a~LAn~G~~P~tg~~vl~~~~~r~v~a~M~TcGmYd~SG~fa~~V 254 (310)
T 1u60_A 210 ATLAAGGVNPLTHKRVLQADNVPYILAEMMMEGLYGRSGDWAYRV 254 (310)
T ss_dssp HHHHTTSEETTTTEECSCGGGHHHHHHHHHHHTTGGGHHHHHHHT
T ss_pred HHHhCCCcCCCCCCEecCHHHHHHHHHHHhhcCCchhHHHHHHHc
Confidence 3332211 11123 344468899999999887765
No 353
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=21.86 E-value=2.3e+02 Score=26.78 Aligned_cols=50 Identities=4% Similarity=-0.066 Sum_probs=23.3
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHH
Q 044791 283 LFELCGNPKWYENAKKVHDYFLQSTIRGDLV--LNNKVIEMYGKCGSMTDARRVFD 336 (623)
Q Consensus 283 Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--~y~~Li~~y~k~g~~~~A~~lf~ 336 (623)
.+...+..|+++.+..+++ .|..++.. .-.+.+...+..|+.+-+..+++
T Consensus 43 ~l~~A~~~g~~~~v~~Ll~----~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 94 (299)
T 1s70_B 43 VFLAACSSGDTEEVLRLLE----RGADINYANVDGLTALHQACIDDNVDMVKFLVE 94 (299)
T ss_dssp HHHHHHHHTCHHHHHHHHH----HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH----cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 3344445566665555443 34333211 01133444555666665555554
No 354
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=21.43 E-value=5.4e+02 Score=25.53 Aligned_cols=143 Identities=11% Similarity=0.053 Sum_probs=0.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcC----------------------------------------------------ChHH
Q 044791 318 VIEMYGKCGSMTDARRVFDHMADR----------------------------------------------------SMDS 345 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~~----------------------------------------------------~~~t 345 (623)
+..-+...|.+|.|++++++-..- +...
T Consensus 22 laadhvaAGsFe~A~~lLnrQ~Givnf~PLk~~F~~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~~l~~ 101 (320)
T 3mkr_B 22 LPVDHILAGSFETAMRLLHDQVGVTQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGLKNGVPAVGLKLND 101 (320)
T ss_dssp CHHHHHHTTCHHHHHHHHHHHSCBCCCGGGHHHHHHHHTTSCEEECSSTTSCCEEECCBTTTTTCCSSSCCBCCCCCHHH
T ss_pred cHHHHHHccCHHHHHHHHHHHhCccCchhhHHHHHHHHHHHhhhccCCCCCCcchhhhcCCccccccccCCCCcccCHHH
Q ss_pred HHHHHHH---HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHH
Q 044791 346 WHLMING---YADNGLGDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVG 422 (623)
Q Consensus 346 yn~Li~~---~~~~g~~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~ 422 (623)
....+.. +...|++++|+..|++.+ +...+.......+.+++.++++...+- +...-|+
T Consensus 102 l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL----------~~i~l~~v~~~~e~~e~~eli~icreY--------ilal~iE 163 (320)
T 3mkr_B 102 LIQRLQLCYQLTTVGKFEEAVEKFRSIL----------LSVPLLVVDNKQEIAEAQQLITICREY--------IVGLSME 163 (320)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH----------HHGGGCCCCSHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHH----------HHhhheeeccHHHHHHHHHHHHHHHHH--------HHHHHHH
Q ss_pred HHHhc---------CCHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHhcCCC
Q 044791 423 VLGKC---------GHLFEAQQFIEQKLPFEP--TAEFWEALRNYARIHGDIDLEDHAEELMVDLDPS 479 (623)
Q Consensus 423 ~~~k~---------g~~e~A~~lf~~~m~~~P--d~~ty~~Li~a~~~~g~~~~A~~~~~~~~~m~~~ 479 (623)
.-.+. .+--|-..+|-. ..+.| -..+...-+....+.+++.-|....+++.++.+.
T Consensus 164 l~Rr~l~~~~~~~~kR~lELAAYFT~-c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 164 TERKKLPKETLEQQKRICEMAAYFTH-SNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HHHTTSCCCSHHHHHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred HHHHhcccCCchhHHHHHHHHHHhcc-CCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
No 355
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=21.25 E-value=2e+02 Score=24.71 Aligned_cols=63 Identities=13% Similarity=0.106 Sum_probs=37.6
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCccchhhHHHHHHhcCCHH
Q 044791 367 EQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGTEHYLGLVGVLGKCGHLF 431 (623)
Q Consensus 367 ~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~~ty~~Li~~~~k~g~~e 431 (623)
+.|++.|++.+..=. .++..+...+..-.|.++++.+.++ +...+..|.---|+.+...|-+.
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~-~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGK-FPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGG-CTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCChhhHHHHHHHHHHCCCEE
Confidence 345567776655432 4445555555566677777777655 44445555555577777777654
No 356
>2hyv_A Annexin A2; calcium-binding protein, membrane-binding protein, helix BUN heparin, hexasaccharide, metal binding protein; HET: UAP SGN IDS; 1.42A {Homo sapiens} PDB: 2hyu_A* 2hyw_A 1w7b_A 1xjl_A
Probab=20.93 E-value=5.9e+02 Score=24.88 Aligned_cols=121 Identities=11% Similarity=0.132 Sum_probs=71.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHhhcCChH---------HHH
Q 044791 279 CFYTLFELCGNPKWYENAKKVHDYFLQSTIRGDLVLNNKVIEMYGKCG--SMTDARRVFDHMADRSMD---------SWH 347 (623)
Q Consensus 279 ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~pd~~~y~~Li~~y~k~g--~~~~A~~lf~~m~~~~~~---------tyn 347 (623)
.|-.++.++...--..+|..+.+-|...| .|. ..||..+|... ++....+.|..+-..+.. .|.
T Consensus 63 ~fe~~l~~l~~~~~~~DA~~L~~AmkG~G--tde---~~LieIL~~Rs~~q~~~Ik~aY~~~y~~~L~~di~se~sG~f~ 137 (308)
T 2hyv_A 63 HLETVILGLLKTPAQYDASELKASMKGLG--TDE---DSLIEIICSRTNQELQEINRVYKEMYKTDLEKDIISDTSGDFR 137 (308)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTSTTC--CCH---HHHHHHHHHCCHHHHHHHHHHHHHHHSSCHHHHHHHTCCHHHH
T ss_pred CHHHHHHHHcCCcHHHHHHHHHHHhhcCC--CCH---HHHHHHHhcCCHHHHHHHHHHHHHhhCCCHHHHHhhccCccHH
Confidence 45566666665544567888887776655 343 45777777654 355666667766555443 577
Q ss_pred HHHHHHHHcCC------------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 044791 348 LMINGYADNGL------------GDEGLQLFEQMRKLGLQPNEQTFLAVFSACGSADAIEEAFIHFESMKSEFG 409 (623)
Q Consensus 348 ~Li~~~~~~g~------------~eeA~~l~~eM~~~g~~Pd~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g 409 (623)
.++.+++...+ -.+|..+++.+. .+...|..++..++.. ....+-..+++.....+|
T Consensus 138 ~ll~~l~~~~r~~e~~~vd~~~a~~DA~~L~~A~~-~~~Gtde~~li~Il~~----RS~~~L~~i~~~Y~~~~g 206 (308)
T 2hyv_A 138 KLMVALAKGRRAEDGSVIDYELIDQDARDLYDAGV-KRKGTDVPKWISIMTE----RSVPHLQKVFDRYKSYSP 206 (308)
T ss_dssp HHHHHHHTCCCCCCCSSCCHHHHHHHHHHHHHTTT-TSSSCCHHHHHHHHHH----SCHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHccccccccCCCCccHHHHHHHHHHHHhh-ccCCCcHHHHHHHHHh----CCHHHHHHHHHHHHHHHC
Confidence 78888887665 345556665543 2345677777666643 333444444444443334
No 357
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.86 E-value=3.8e+02 Score=28.65 Aligned_cols=63 Identities=10% Similarity=0.046 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC--HHHHH-HHHHHHHhcCCHHHHHHHHHHHHh
Q 044791 344 DSWHLMINGYADNGLGDEGLQLFEQMRKLGL-QPN--EQTFL-AVFSACGSADAIEEAFIHFESMKS 406 (623)
Q Consensus 344 ~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~-~Pd--~~ty~-~li~a~~~~g~~e~A~~l~~~m~~ 406 (623)
..+|.++..|...+.++.|..+..+..---. ..+ ..+|. .+...+.-.+++.+|.+.|....+
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3799999999999999999999988741100 111 13343 234456678999999999888774
No 358
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=20.65 E-value=4.8e+02 Score=23.70 Aligned_cols=146 Identities=13% Similarity=0.163 Sum_probs=87.7
Q ss_pred HHHcCCHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC----------------C-HHHHHHH
Q 044791 256 LCQEGKVKEAIELMDKGVKADASCFYTLFELCGNPKWYENAKKVHDYFLQSTIRG----------------D-LVLNNKV 318 (623)
Q Consensus 256 ~~~~g~~~~A~~l~~~~~~pd~~ty~~Ll~~~~~~g~~~~A~~l~~~m~~~g~~p----------------d-~~~y~~L 318 (623)
+--.|.+..|+-++.+.-..+..-|-.| +|-+.+++..|+..++.++...+.- | ..-|+.+
T Consensus 43 LyyngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~ 120 (242)
T 3kae_A 43 LYLNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLL 120 (242)
T ss_dssp HHHTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHH
T ss_pred hhhcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHH
Confidence 3457888888888766444444444443 4567789999999999998554432 2 2567778
Q ss_pred HHHHHHcCCHHHHHHHHHHhhcCChH------------------HHHHHHHHHHHcC----ChHHHHH--------HHHH
Q 044791 319 IEMYGKCGSMTDARRVFDHMADRSMD------------------SWHLMINGYADNG----LGDEGLQ--------LFEQ 368 (623)
Q Consensus 319 i~~y~k~g~~~~A~~lf~~m~~~~~~------------------tyn~Li~~~~~~g----~~eeA~~--------l~~e 368 (623)
...+...|+.+||++.|..--..+.. .-++++.+ +.| .+....+ ..++
T Consensus 121 a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnliyeN~vp~~~d~~~i~~~~--~~~i~~~y~~d~~~lHe~~s~~~ikk 198 (242)
T 3kae_A 121 GDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLLLENKVPQKRDKENVRQTG--RRGIEEEYVSDSIEFHESLSPSLVKK 198 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHTTCCCCCC-------------CHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHhcCHHHhhhHhhhhcCCccccchHHHHHhhcCCCcccchHHHHhhh--hccchhhhhhhHHHHHHhccHHHHHH
Confidence 88888999999999988654221100 01111110 000 0011111 1222
Q ss_pred HHHcCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHHhh
Q 044791 369 MRKLGLQPNEQTFLAV--FSACGSADAIEEAFIHFESMKSE 407 (623)
Q Consensus 369 M~~~g~~Pd~~ty~~l--i~a~~~~g~~e~A~~l~~~m~~~ 407 (623)
- ....|..-+|-.. ...|...|..++...+|..++++
T Consensus 199 Y--~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~lR~k 237 (242)
T 3kae_A 199 Y--MEHVPGIGSYFISNAARRYFNLGMNDKSKACFELVRRK 237 (242)
T ss_dssp H--HTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H--HHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHHHhc
Confidence 2 2356777776543 34577899999999999988854
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=20.44 E-value=6e+02 Score=29.26 Aligned_cols=108 Identities=9% Similarity=-0.044 Sum_probs=73.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHhhcCChHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---------------------
Q 044791 318 VIEMYGKCGSMTDARRVFDHMADRSMDSWHLMINGYADNGLGDEGLQLFEQMRKLGLQP--------------------- 376 (623)
Q Consensus 318 Li~~y~k~g~~~~A~~lf~~m~~~~~~tyn~Li~~~~~~g~~eeA~~l~~eM~~~g~~P--------------------- 376 (623)
++..+...|..+-|.++...+. .+...--.+..+|...|++++|..+|++.- .|+..
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~-~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~~e~~ 893 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLN-SDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEKYHHQ 893 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHHTTTC
T ss_pred HHHHHHHhcHHHHHHHHHhhcC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCccccc
Confidence 6777788888888877665554 454433467778999999999999998753 22211
Q ss_pred --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCCc----cchhhHHHHHHhcC
Q 044791 377 --NEQTFLAVFSACGSADAIEEAFIHFESMKSEFGISPGT----EHYLGLVGVLGKCG 428 (623)
Q Consensus 377 --d~~ty~~li~a~~~~g~~e~A~~l~~~m~~~~g~~p~~----~ty~~Li~~~~k~g 428 (623)
...=|..++.-+-+.+.++.+.++-+..+....- -|. ..|+.+..+.+..|
T Consensus 894 ~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~-dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 894 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKET-DDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCS-CCHHHHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhccc-CCccchHHHHHHHHHHHhhCC
Confidence 1125788899999999999999888877753221 122 35666777766554
No 360
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=20.43 E-value=2.3e+02 Score=24.22 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=11.6
Q ss_pred hHHHHHHhcCCHHHHHHHHHh
Q 044791 419 GLVGVLGKCGHLFEAQQFIEQ 439 (623)
Q Consensus 419 ~Li~~~~k~g~~e~A~~lf~~ 439 (623)
+.+...++.|+.+-+.-+++.
T Consensus 115 t~L~~A~~~~~~~~v~~Ll~~ 135 (169)
T 2y1l_E 115 TPLHLAAMFGHLEIVEVLLKN 135 (169)
T ss_dssp CHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHcCCHHHHHHHHHc
Confidence 344445556666665555554
No 361
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=20.22 E-value=1.2e+02 Score=21.34 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=25.7
Q ss_pred HHHHHHhcccCCCC-ChhHHHhhHhhh-cchhHHHHHHH
Q 044791 558 RLAIAYGLISTPAR-TPLRIIKNLRVC-GDCHNAIKIMS 594 (623)
Q Consensus 558 ~l~~A~~ll~~m~~-~~~~i~~~l~~~-g~~~~a~~l~~ 594 (623)
+.++.+.-|..|-. ...+++++|..+ |+.+.|++.+-
T Consensus 10 ~~~~~l~~L~~MGF~~~~~~~~AL~~t~gnve~Ave~L~ 48 (53)
T 2knz_A 10 RFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLL 48 (53)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44555666777776 566788888776 56888887654
No 362
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=20.00 E-value=4.3e+02 Score=29.20 Aligned_cols=22 Identities=23% Similarity=0.067 Sum_probs=17.6
Q ss_pred HHhcCCHHHHHHHHHhhCCCCCC
Q 044791 424 LGKCGHLFEAQQFIEQKLPFEPT 446 (623)
Q Consensus 424 ~~k~g~~e~A~~lf~~~m~~~Pd 446 (623)
+...|+++.|++.+++ +++-|.
T Consensus 548 ~~~~g~~~~AL~~i~~-L~llPl 569 (661)
T 2qx5_A 548 LYFNKQWQETLSQMEL-LDLLPF 569 (661)
T ss_dssp HHHTTCHHHHHHHHHH-TSCSCC
T ss_pred HHHcCCHHHHHHHHHh-CCCCCC
Confidence 3678999999999998 876673
Done!