Query 044792
Match_columns 219
No_of_seqs 137 out of 1543
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:48:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044792.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044792hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00265 MADS_MEF2_like MEF2 (m 100.0 2.6E-33 5.7E-38 196.3 2.1 72 10-81 1-72 (77)
2 KOG0014 MADS box transcription 100.0 2.8E-32 6E-37 222.9 8.1 76 9-84 1-78 (195)
3 smart00432 MADS MADS domain. 100.0 5.2E-30 1.1E-34 169.9 3.9 59 10-68 1-59 (59)
4 cd00266 MADS_SRF_like SRF-like 100.0 3.1E-30 6.7E-35 183.4 2.9 73 10-82 1-74 (83)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 3.9E-29 8.4E-34 165.8 3.1 59 10-68 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 5.7E-27 1.2E-31 150.5 -1.5 51 17-67 1-51 (51)
7 KOG0015 Regulator of arginine 99.8 3.1E-21 6.7E-26 162.4 3.3 70 5-74 58-127 (338)
8 COG5068 ARG80 Regulator of arg 99.5 2.6E-14 5.7E-19 125.7 3.2 69 8-76 80-148 (412)
9 PF01486 K-box: K-box region; 98.8 2.4E-08 5.3E-13 73.3 7.8 89 95-207 12-100 (100)
10 PF15079 DUF4546: Domain of un 73.7 45 0.00097 26.7 9.3 63 97-176 49-111 (205)
11 PF10584 Proteasome_A_N: Prote 71.7 0.98 2.1E-05 24.0 -0.4 13 52-64 4-16 (23)
12 PF06698 DUF1192: Protein of u 63.8 20 0.00043 23.6 4.4 31 140-170 17-47 (59)
13 PF10491 Nrf1_DNA-bind: NLS-bi 62.9 7.1 0.00015 32.2 2.7 45 35-79 36-87 (214)
14 PF09151 DUF1936: Domain of un 60.2 6.8 0.00015 22.3 1.5 28 42-69 2-31 (36)
15 KOG4302 Microtubule-associated 51.3 1.9E+02 0.0041 28.3 10.5 33 140-172 153-185 (660)
16 PRK11546 zraP zinc resistance 44.3 31 0.00068 26.9 3.4 74 134-208 35-108 (143)
17 TIGR01916 F420_cofE F420-0:gam 42.1 24 0.00052 30.0 2.7 29 41-69 133-161 (243)
18 COG5000 NtrY Signal transducti 35.7 21 0.00045 34.5 1.5 22 44-65 374-395 (712)
19 PRK00064 recF recombination pr 34.0 1.2E+02 0.0026 27.0 6.1 99 39-173 104-204 (361)
20 PF07106 TBPIP: Tat binding pr 32.9 2.4E+02 0.0052 22.0 9.4 65 96-172 73-137 (169)
21 PF09941 DUF2173: Uncharacteri 31.6 31 0.00068 25.5 1.6 26 39-65 2-27 (108)
22 PRK13293 F420-0--gamma-glutamy 30.9 47 0.001 28.3 2.7 29 41-69 134-162 (245)
23 PF07820 TraC: TraC-like prote 30.5 2.1E+02 0.0045 20.6 7.5 30 97-126 4-33 (92)
24 KOG0859 Synaptobrevin/VAMP-lik 29.6 2.2E+02 0.0048 23.6 6.2 28 146-173 124-151 (217)
25 PRK01919 tatB sec-independent 29.2 2.6E+02 0.0056 22.4 6.5 12 50-61 14-25 (169)
26 PF04521 Viral_P18: ssRNA posi 28.6 1.8E+02 0.0038 22.0 5.1 24 26-49 4-27 (120)
27 PF04678 DUF607: Protein of un 27.7 1.4E+02 0.003 23.9 4.9 50 65-120 32-82 (180)
28 KOG0994 Extracellular matrix g 27.6 1.2E+02 0.0027 31.7 5.3 35 142-176 1220-1254(1758)
29 PRK09822 lipopolysaccharide co 27.1 45 0.00097 28.3 1.9 39 28-67 119-160 (269)
30 COG3883 Uncharacterized protei 26.6 4E+02 0.0087 23.0 7.7 25 146-170 79-103 (265)
31 PF11460 DUF3007: Protein of u 26.6 1E+02 0.0023 22.6 3.6 18 140-157 86-103 (104)
32 KOG0184 20S proteasome, regula 26.5 32 0.00069 28.9 1.0 21 44-64 3-23 (254)
33 COG4831 Roadblock/LC7 domain [ 26.3 53 0.0011 23.9 1.9 27 38-65 3-29 (109)
34 PF15290 Syntaphilin: Golgi-lo 26.0 3E+02 0.0065 24.0 6.7 25 192-216 149-178 (305)
35 COG4917 EutP Ethanolamine util 25.6 51 0.0011 25.5 1.8 24 42-65 58-81 (148)
36 PF04120 Iron_permease: Low af 25.5 2.7E+02 0.0058 21.4 5.8 29 140-168 91-119 (132)
37 PF04873 EIN3: Ethylene insens 25.1 24 0.00052 31.7 0.0 39 33-71 53-92 (354)
38 PF13252 DUF4043: Protein of u 24.9 35 0.00076 30.5 1.0 23 39-61 270-292 (341)
39 PF09158 MotCF: Bacteriophage 24.9 30 0.00066 25.3 0.5 53 13-80 19-72 (103)
40 PF14357 DUF4404: Domain of un 23.9 52 0.0011 23.1 1.6 15 192-206 60-74 (85)
41 PF05700 BCAS2: Breast carcino 23.9 4.2E+02 0.009 21.9 8.0 68 95-172 97-164 (221)
42 KOG4252 GTP-binding protein [S 23.9 38 0.00083 27.8 0.9 28 46-79 90-117 (246)
43 KOG3048 Molecular chaperone Pr 23.5 2.3E+02 0.005 22.2 5.1 33 140-172 9-41 (153)
44 PRK13848 conjugal transfer pro 22.7 3E+02 0.0065 19.8 7.2 27 99-125 7-33 (98)
45 PF06020 Roughex: Drosophila r 22.2 40 0.00086 29.4 0.8 16 44-59 183-198 (334)
46 PF04204 HTS: Homoserine O-suc 21.5 35 0.00076 29.9 0.3 43 37-79 201-248 (298)
47 PRK00098 GTPase RsgA; Reviewed 21.2 71 0.0015 27.6 2.2 46 28-79 58-105 (298)
48 PLN03230 acetyl-coenzyme A car 21.2 4.7E+02 0.01 24.2 7.4 21 147-167 105-125 (431)
49 PF12212 PAZ_siRNAbind: Piwi/A 20.7 57 0.0012 20.4 1.1 23 195-217 6-28 (47)
50 KOG0183 20S proteasome, regula 20.2 54 0.0012 27.4 1.1 16 49-64 4-19 (249)
No 1
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=2.6e-33 Score=196.29 Aligned_cols=72 Identities=47% Similarity=0.825 Sum_probs=70.4
Q ss_pred CcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCCCchhhhhhhccC
Q 044792 10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLTGA 81 (219)
Q Consensus 10 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl~Ry~~~~ 81 (219)
||+||+|++|+|+.+|++||+||+.||||||+|||+||||+||+|||||+|++|+|++|++++||+||+..+
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~ 72 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTS 72 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhcc
Confidence 899999999999999999999999999999999999999999999999999999999999999999998864
No 2
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=99.97 E-value=2.8e-32 Score=222.93 Aligned_cols=76 Identities=54% Similarity=0.881 Sum_probs=72.6
Q ss_pred CCcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCC--CchhhhhhhccCCCC
Q 044792 9 KGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPN--PDDVLDRFLTGAGAE 84 (219)
Q Consensus 9 mgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~ps--v~~Vl~Ry~~~~~~~ 84 (219)
|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++|.||+|+ |++|++||.....+.
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 78 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPS 78 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhh
Confidence 8999999999999999999999999999999999999999999999999999999999998 999999998865544
No 3
>smart00432 MADS MADS domain.
Probab=99.96 E-value=5.2e-30 Score=169.89 Aligned_cols=59 Identities=59% Similarity=0.997 Sum_probs=58.1
Q ss_pred CcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCC
Q 044792 10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHP 68 (219)
Q Consensus 10 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~p 68 (219)
||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|++|.|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999887
No 4
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=3.1e-30 Score=183.35 Aligned_cols=73 Identities=49% Similarity=0.807 Sum_probs=69.4
Q ss_pred CcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCC-CchhhhhhhccCC
Q 044792 10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPN-PDDVLDRFLTGAG 82 (219)
Q Consensus 10 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~ps-v~~Vl~Ry~~~~~ 82 (219)
||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+.+.|++++ +++++++|...+.
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~ 74 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSA 74 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCH
Confidence 799999999999999999999999999999999999999999999999999999997777 9999999988653
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.95 E-value=3.9e-29 Score=165.81 Aligned_cols=59 Identities=59% Similarity=0.941 Sum_probs=57.5
Q ss_pred CcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCC
Q 044792 10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHP 68 (219)
Q Consensus 10 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~p 68 (219)
||+||+|++|+|+..|++||+||+.||||||+||||||||+||+|||||+|+++.|++|
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 79999999999999999999999999999999999999999999999999999999775
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.92 E-value=5.7e-27 Score=150.50 Aligned_cols=51 Identities=61% Similarity=1.005 Sum_probs=46.3
Q ss_pred eEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCC
Q 044792 17 KRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGH 67 (219)
Q Consensus 17 ~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~ 67 (219)
++|+|++.|++||+|||.||||||+|||+||||+||+|||||+|++|+|++
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 589999999999999999999999999999999999999999999999964
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.82 E-value=3.1e-21 Score=162.37 Aligned_cols=70 Identities=37% Similarity=0.607 Sum_probs=66.2
Q ss_pred cccCCCcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCCCchhh
Q 044792 5 KQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVL 74 (219)
Q Consensus 5 ~~~~mgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl 74 (219)
+|++.||+||+|+||+|+..|.+||||||.||||||+|||||+|.+|-++|.|++|-+|+|++|-.+.||
T Consensus 58 ~k~~~gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i 127 (338)
T KOG0015|consen 58 GKKTTGRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMI 127 (338)
T ss_pred CccccceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccc
Confidence 5788999999999999999999999999999999999999999999999999999999999999865444
No 8
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.46 E-value=2.6e-14 Score=125.72 Aligned_cols=69 Identities=39% Similarity=0.548 Sum_probs=65.2
Q ss_pred CCCcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCCCchhhhh
Q 044792 8 NKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDR 76 (219)
Q Consensus 8 ~mgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl~R 76 (219)
+|||+||.|.+|+|+.+|.|||+||+.||+|||.||++|.|.+|.++|.|.+|..+.|+.|....|+.-
T Consensus 80 ~~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~~ 148 (412)
T COG5068 80 SVTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKS 148 (412)
T ss_pred ccccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccccc
Confidence 689999999999999999999999999999999999999999999999999999999999987666643
No 9
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=98.80 E-value=2.4e-08 Score=73.27 Aligned_cols=89 Identities=19% Similarity=0.246 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044792 95 EKLERLKQEYVELLNRLKEEEKKRDEIAKKRGNDRANGVFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDELAAAS 174 (219)
Q Consensus 95 ~~~~~l~~~~~~l~~qlek~ekk~~e~l~~~~~~~~~~~~~w~~~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~Ll~e~ 174 (219)
...+.+..++..+..+++. +....++..|+ +|++|+++||..|+..|+..+..|+.|+.++++++
T Consensus 12 ~~~e~~~~e~~~L~~~~~~--------L~~~~R~~~Ge-------dL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~ 76 (100)
T PF01486_consen 12 SQHEELQQEIAKLRKENES--------LQKELRHLMGE-------DLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQ 76 (100)
T ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHhccccc-------cccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 5667888888888888877 33344444454 99999999999999999999999999999999999
Q ss_pred hhcCCCCcccccCCCCCCCchhhhHHHHHHhhh
Q 044792 175 VASNNFVNQFNIDNNIPIDFGSEFDDLCCLLEG 207 (219)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~f~~e~~~l~~~~~~ 207 (219)
+. .+. .+...+..+|..|+..+.+
T Consensus 77 i~------~l~---~ke~~l~~en~~L~~~~~e 100 (100)
T PF01486_consen 77 IE------ELK---KKERELEEENNQLRQKIEE 100 (100)
T ss_pred HH------HHH---HHHHHHHHHHHHHHHHhcC
Confidence 98 777 7889999999999988764
No 10
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=73.72 E-value=45 Score=26.73 Aligned_cols=63 Identities=25% Similarity=0.345 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044792 97 LERLKQEYVELLNRLKEEEKKRDEIAKKRGNDRANGVFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDELAAASVA 176 (219)
Q Consensus 97 ~~~l~~~~~~l~~qlek~ekk~~e~l~~~~~~~~~~~~~w~~~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~Ll~e~~~ 176 (219)
.++|.+++-+.+++|.. +.++|.++. ++-+-+.+-|.+|...+-+..+.+.++++-|+--+-+
T Consensus 49 T~eLkNeLREVREELkE----KmeEIKQIK-------------diMDKDFDKL~EFVEIMKeMQkDMDEKMDvLiNiQKn 111 (205)
T PF15079_consen 49 TQELKNELREVREELKE----KMEEIKQIK-------------DIMDKDFDKLHEFVEIMKEMQKDMDEKMDVLINIQKN 111 (205)
T ss_pred cHHHHHHHHHHHHHHHH----HHHHHHHHH-------------HHHhhhHHHHHHHHHHHHHHHHhHHHhhhHHhhcccc
Confidence 35677777777666654 444455443 4445567889999999999999999999988866554
No 11
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=71.71 E-value=0.98 Score=23.97 Aligned_cols=13 Identities=38% Similarity=0.659 Sum_probs=10.1
Q ss_pred eeeeeCCCCcccc
Q 044792 52 AIVIMSPHKRAFT 64 (219)
Q Consensus 52 avIvfsp~gk~~~ 64 (219)
.+.+|||+|++|.
T Consensus 4 ~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 4 SITTFSPDGRLFQ 16 (23)
T ss_dssp STTSBBTTSSBHH
T ss_pred CceeECCCCeEEe
Confidence 3568999999764
No 12
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=63.81 E-value=20 Score=23.62 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=26.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044792 140 SIDDMERDELELYLKSLEKLKTSVKSKVDEL 170 (219)
Q Consensus 140 ~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L 170 (219)
+|+.||++||.+....|+.=+.+++.-+..-
T Consensus 17 dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 17 DLSLLSVEELEERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred CchhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999988888877655443
No 13
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=62.87 E-value=7.1 Score=32.22 Aligned_cols=45 Identities=20% Similarity=0.341 Sum_probs=35.0
Q ss_pred hhhhh----hhhhhhhcccceeeeeeCCCCc---ccccCCCCCchhhhhhhc
Q 044792 35 GLFNK----ASELCVLCGAEVAIVIMSPHKR---AFTFGHPNPDDVLDRFLT 79 (219)
Q Consensus 35 GL~KK----a~ELs~LCgaevavIvfsp~gk---~~~f~~psv~~Vl~Ry~~ 79 (219)
-|+.| ..|++|-+|-+|.|++.+|+-. .-.||.-..+.|+..|..
T Consensus 36 rllrkl~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~pL~~vv~~~~~ 87 (214)
T PF10491_consen 36 RLLRKLRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAPLENVVRNLKP 87 (214)
T ss_pred HHHHHHHHHHHHHHHhhhceeEEEEecCCCCCCceeeecchhHHHHHHHHHH
Confidence 45555 4899999999999999999743 456788888888877753
No 14
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=60.18 E-value=6.8 Score=22.27 Aligned_cols=28 Identities=25% Similarity=0.506 Sum_probs=18.7
Q ss_pred hhhhhcccceeeeeeCCCCccccc--CCCC
Q 044792 42 ELCVLCGAEVAIVIMSPHKRAFTF--GHPN 69 (219)
Q Consensus 42 ELs~LCgaevavIvfsp~gk~~~f--~~ps 69 (219)
-|+--||+-|-+-||...|..-.| +.|.
T Consensus 2 hlcpkcgvgvl~pvy~~kgeikvfrcsnpa 31 (36)
T PF09151_consen 2 HLCPKCGVGVLEPVYNQKGEIKVFRCSNPA 31 (36)
T ss_dssp -B-TTTSSSBEEEEE-TTS-EEEEEES-TT
T ss_pred ccCCccCceEEEEeecCCCcEEEEEcCCCc
Confidence 367789999999999999975555 5554
No 15
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=51.28 E-value=1.9e+02 Score=28.30 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=29.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044792 140 SIDDMERDELELYLKSLEKLKTSVKSKVDELAA 172 (219)
Q Consensus 140 ~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~Ll~ 172 (219)
+..+|+.+.|.+|...|..+.+.-..|++.+..
T Consensus 153 D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~~ 185 (660)
T KOG4302|consen 153 DESDLSLEKLEELREHLNELQKEKSDRLEKVLE 185 (660)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778999999999999999999998888887643
No 16
>PRK11546 zraP zinc resistance protein; Provisional
Probab=44.31 E-value=31 Score=26.87 Aligned_cols=74 Identities=12% Similarity=0.149 Sum_probs=44.9
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccccCCCCCCCchhhhHHHHHHhhhc
Q 044792 134 FWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDELAAASVASNNFVNQFNIDNNIPIDFGSEFDDLCCLLEGT 208 (219)
Q Consensus 134 ~~w~~~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~Ll~e~~~~~~~~~~~~~~~~~~~~f~~e~~~l~~~~~~~ 208 (219)
.||.. ....|++|+-..+....++....+..=..+|.....+..-+.....+|..+-.-+..|-..|+.+|-+.
T Consensus 35 G~~~~-~~~~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 35 GMWQQ-NAAPLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDEL 108 (143)
T ss_pred CCCcc-ccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 48876 889999999988887777776666554444444333322222222333344456666777777666644
No 17
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=42.10 E-value=24 Score=30.00 Aligned_cols=29 Identities=28% Similarity=0.464 Sum_probs=25.1
Q ss_pred hhhhhhcccceeeeeeCCCCcccccCCCC
Q 044792 41 SELCVLCGAEVAIVIMSPHKRAFTFGHPN 69 (219)
Q Consensus 41 ~ELs~LCgaevavIvfsp~gk~~~f~~ps 69 (219)
.+|.-.+|++|+|||+.+.|.+|--|.+.
T Consensus 133 ~~l~~~~g~~v~VIItDt~gr~~R~G~~g 161 (243)
T TIGR01916 133 RGLRELTGVDVGVIITDTNGRPFREGQVG 161 (243)
T ss_pred HHHHHHHCCCEEEEEECCCCCccccCCCC
Confidence 56777899999999999999998877765
No 18
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=35.69 E-value=21 Score=34.46 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=20.1
Q ss_pred hhhcccceeeeeeCCCCccccc
Q 044792 44 CVLCGAEVAIVIMSPHKRAFTF 65 (219)
Q Consensus 44 s~LCgaevavIvfsp~gk~~~f 65 (219)
|+|.|+.++||+|.++|..+.|
T Consensus 374 ~VLsgvtaGVi~~d~~g~i~t~ 395 (712)
T COG5000 374 AVLSGLTAGVIGFDNRGCITTV 395 (712)
T ss_pred HHHhcCceeEEEEcCCCeeEee
Confidence 5999999999999999988775
No 19
>PRK00064 recF recombination protein F; Reviewed
Probab=34.01 E-value=1.2e+02 Score=26.98 Aligned_cols=99 Identities=21% Similarity=0.319 Sum_probs=57.2
Q ss_pred hhhhhhhhcccceeeeeeCCCCcccccCCCCC-chhhhhhhccCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 044792 39 KASELCVLCGAEVAIVIMSPHKRAFTFGHPNP-DDVLDRFLTGAGAESSLAATTVEDEKLERLKQEYVELLNRLKEEEKK 117 (219)
Q Consensus 39 Ka~ELs~LCgaevavIvfsp~gk~~~f~~psv-~~Vl~Ry~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~qlek~ekk 117 (219)
++++|.-+. .+|+|+|.+--...+.|+. ...||++.... .......-.+|.++..+..+
T Consensus 104 ~~~~l~~~~----~~v~~~p~~~~l~~~~p~~RR~fLD~~~~~~------------~~~y~~~~~~y~k~lkqrn~---- 163 (361)
T PRK00064 104 KLAELAGLL----NVVLFTPEDLRLVKGGPSERRRFLDRLLFQI------------EPVYASALSQYERALKQRNA---- 163 (361)
T ss_pred CHHHHhhhc----cEEEEccchhhhhcCCHHHHHHHHHHHHhcc------------CHHHHHHHHHHHHHHHHHHH----
Confidence 445554443 3799999987667788885 47777775521 11222233445555444333
Q ss_pred HHHHHHHHHhhhcCC-CcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044792 118 RDEIAKKRGNDRANG-VFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDELAAA 173 (219)
Q Consensus 118 ~~e~l~~~~~~~~~~-~~~w~~~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~Ll~e 173 (219)
.+. ..... ..-|+. +|.++...|.......-.++...+.+
T Consensus 164 ---lLk----~~~~~~l~~w~~---------~l~~~g~~I~~~R~~~~~~L~~~~~~ 204 (361)
T PRK00064 164 ---LLK----QADYAWLDVWDE---------QLAELGAAIAAARLEYLERLAPLAAK 204 (361)
T ss_pred ---Hhc----cCCcchHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 00000 013554 88888888888888887777776655
No 20
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=32.91 E-value=2.4e+02 Score=22.04 Aligned_cols=65 Identities=22% Similarity=0.255 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044792 96 KLERLKQEYVELLNRLKEEEKKRDEIAKKRGNDRANGVFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDELAA 172 (219)
Q Consensus 96 ~~~~l~~~~~~l~~qlek~ekk~~e~l~~~~~~~~~~~~~w~~~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~Ll~ 172 (219)
.+..+..++..|++++..+...... +..-... =...++.+||......|..-...+..|+..|..
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~-l~~eL~~-----------L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKS-LEAELAS-----------LSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-----------HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445556666666666663322211 2111111 124678889999999999999999999888876
No 21
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=31.64 E-value=31 Score=25.54 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=20.7
Q ss_pred hhhhhhhhcccceeeeeeCCCCccccc
Q 044792 39 KASELCVLCGAEVAIVIMSPHKRAFTF 65 (219)
Q Consensus 39 Ka~ELs~LCgaevavIvfsp~gk~~~f 65 (219)
+..+|..|-||-+ +..||++|++.+|
T Consensus 2 ~l~~Lm~lpGv~A-Ag~Fs~~G~l~e~ 27 (108)
T PF09941_consen 2 KLDKLMKLPGVVA-AGEFSDDGKLVEY 27 (108)
T ss_pred cHHHhhcCCCeEE-EEEECCCCeEEee
Confidence 3467888888855 4789999998877
No 22
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=30.88 E-value=47 Score=28.30 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=24.6
Q ss_pred hhhhhhcccceeeeeeCCCCcccccCCCC
Q 044792 41 SELCVLCGAEVAIVIMSPHKRAFTFGHPN 69 (219)
Q Consensus 41 ~ELs~LCgaevavIvfsp~gk~~~f~~ps 69 (219)
.+|.-.||++|+|||....|++|-.|...
T Consensus 134 ~~l~~~~g~~v~VIItDt~gr~~R~G~t~ 162 (245)
T PRK13293 134 EGLEELTGKKVGVIITDTNGRPFRKGQRG 162 (245)
T ss_pred HHHHHHHCCCEEEEEEcCCCcccccCCcc
Confidence 56777899999999999999988776655
No 23
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=30.50 E-value=2.1e+02 Score=20.59 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044792 97 LERLKQEYVELLNRLKEEEKKRDEIAKKRG 126 (219)
Q Consensus 97 ~~~l~~~~~~l~~qlek~ekk~~e~l~~~~ 126 (219)
+..+..++.+|++++..++++..+.+-.+-
T Consensus 4 ~s~I~~eIekLqe~lk~~e~keaERigr~A 33 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETKEAERIGRIA 33 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999999987777767666543
No 24
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.57 E-value=2.2e+02 Score=23.58 Aligned_cols=28 Identities=7% Similarity=0.139 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044792 146 RDELELYLKSLEKLKTSVKSKVDELAAA 173 (219)
Q Consensus 146 ~eeL~~L~~~Le~~l~~V~~R~~~Ll~e 173 (219)
.+-|.....++.+....+-+-++.++.-
T Consensus 124 id~lskvkaqv~evk~vM~eNIekvldR 151 (217)
T KOG0859|consen 124 ISKLAKVKAQVTEVKGVMMENIEKVLDR 151 (217)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667777777777777777777776643
No 25
>PRK01919 tatB sec-independent translocase; Provisional
Probab=29.23 E-value=2.6e+02 Score=22.43 Aligned_cols=12 Identities=33% Similarity=0.683 Sum_probs=9.2
Q ss_pred ceeeeeeCCCCc
Q 044792 50 EVAIVIMSPHKR 61 (219)
Q Consensus 50 evavIvfsp~gk 61 (219)
=||+|||+|..=
T Consensus 14 VVALiV~GPekL 25 (169)
T PRK01919 14 VVALVVIGPERL 25 (169)
T ss_pred HHHHheeCchHh
Confidence 489999999543
No 26
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=28.63 E-value=1.8e+02 Score=22.00 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=19.4
Q ss_pred ceecccccchhhhhhhhhhhhccc
Q 044792 26 QVTFSKRKKGLFNKASELCVLCGA 49 (219)
Q Consensus 26 ~vTf~KRr~GL~KKa~ELs~LCga 49 (219)
-.+|+|+|..+++|-.+-.+-|..
T Consensus 4 ~~~~rk~R~~~y~~lgl~~vkC~L 27 (120)
T PF04521_consen 4 FRCVRKYRASVYKKLGLSAVKCRL 27 (120)
T ss_pred hHHHHHHHHHHHHHcCCeeeeecC
Confidence 467999999999999887775543
No 27
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=27.70 E-value=1.4e+02 Score=23.92 Aligned_cols=50 Identities=22% Similarity=0.350 Sum_probs=28.1
Q ss_pred cCCCC-CchhhhhhhccCCCCccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044792 65 FGHPN-PDDVLDRFLTGAGAESSLAATTVEDEKLERLKQEYVELLNRLKEEEKKRDE 120 (219)
Q Consensus 65 f~~ps-v~~Vl~Ry~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~qlek~ekk~~e 120 (219)
+-.|+ |.+.+.+-......... ....+..+..++..+..+++.+++.+.+
T Consensus 32 ~L~P~~v~~~v~~~~~~~~~~~~------~~~~~~~l~~~l~~~~~el~~le~~k~~ 82 (180)
T PF04678_consen 32 YLRPKQVKEAVHRLLPLLNVEEY------QNSRERQLRKRLEELRQELAPLEKIKQE 82 (180)
T ss_pred eECHHHHHHHHHHHhccccchhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44564 55555555443322111 1255667777888888888776654443
No 28
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=27.57 E-value=1.2e+02 Score=31.69 Aligned_cols=35 Identities=9% Similarity=0.263 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 044792 142 DDMERDELELYLKSLEKLKTSVKSKVDELAAASVA 176 (219)
Q Consensus 142 ~~Ls~eeL~~L~~~Le~~l~~V~~R~~~Ll~e~~~ 176 (219)
-+.+.+++.++...++.+.+.|.+--+.|-..+..
T Consensus 1220 ~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~ 1254 (1758)
T KOG0994|consen 1220 PSVSAEDIAQLASATESLRRQLQALTEDLPQEEET 1254 (1758)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 35667777777777777777776655555444444
No 29
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=27.05 E-value=45 Score=28.30 Aligned_cols=39 Identities=21% Similarity=0.286 Sum_probs=27.7
Q ss_pred ecccccchhhhhhhhhhhhccc---ceeeeeeCCCCcccccCC
Q 044792 28 TFSKRKKGLFNKASELCVLCGA---EVAIVIMSPHKRAFTFGH 67 (219)
Q Consensus 28 Tf~KRr~GL~KKa~ELs~LCga---evavIvfsp~gk~~~f~~ 67 (219)
-|.+-|.|++||. -+.+||+. -||-|.||+.++...|++
T Consensus 119 ~~~~~~~~~~~~~-~~~~L~~~~~~l~~~v~fS~~~r~IGFSk 160 (269)
T PRK09822 119 FYRREKGGFLKKI-KFNILKRVHKALLISVPLSKRGRLAGFCK 160 (269)
T ss_pred hhhhccCchhhhh-HHHHHhhhhhhhEEEeeccccCCceeeee
Confidence 3455578888887 46788855 466677999988777755
No 30
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.63 E-value=4e+02 Score=22.99 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044792 146 RDELELYLKSLEKLKTSVKSKVDEL 170 (219)
Q Consensus 146 ~eeL~~L~~~Le~~l~~V~~R~~~L 170 (219)
-.++..|...|..+...|++|-+-|
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777776665544
No 31
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=26.57 E-value=1e+02 Score=22.61 Aligned_cols=18 Identities=22% Similarity=0.508 Sum_probs=15.7
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 044792 140 SIDDMERDELELYLKSLE 157 (219)
Q Consensus 140 ~l~~Ls~eeL~~L~~~Le 157 (219)
.++.|+++|++.|...++
T Consensus 86 Rle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 86 RLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHhCCHHHHHHHHHHhc
Confidence 678999999999988776
No 32
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=26.50 E-value=32 Score=28.87 Aligned_cols=21 Identities=24% Similarity=0.452 Sum_probs=17.1
Q ss_pred hhhcccceeeeeeCCCCcccc
Q 044792 44 CVLCGAEVAIVIMSPHKRAFT 64 (219)
Q Consensus 44 s~LCgaevavIvfsp~gk~~~ 64 (219)
||=+|-+.|+-+|||+|+.|.
T Consensus 3 sIGtGyDls~s~fSpdGrvfQ 23 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQ 23 (254)
T ss_pred cccccccccceeeCCCCceeh
Confidence 455788899999999998654
No 33
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=26.32 E-value=53 Score=23.85 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=21.3
Q ss_pred hhhhhhhhhcccceeeeeeCCCCccccc
Q 044792 38 NKASELCVLCGAEVAIVIMSPHKRAFTF 65 (219)
Q Consensus 38 KKa~ELs~LCgaevavIvfsp~gk~~~f 65 (219)
-|..||--+-||-+| =.|||+||+..|
T Consensus 3 ekLdeLlqi~Gv~AA-Gefs~DGkLv~Y 29 (109)
T COG4831 3 EKLDELLQIKGVMAA-GEFSPDGKLVEY 29 (109)
T ss_pred hhHHHHhCccceeEe-ceeCCCCceEEe
Confidence 357788888887555 579999998887
No 34
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=25.98 E-value=3e+02 Score=24.02 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=16.0
Q ss_pred CCchhh---hHHHHHHhh--hccCCCCccc
Q 044792 192 IDFGSE---FDDLCCLLE--GTNEDGILRN 216 (219)
Q Consensus 192 ~~f~~e---~~~l~~~~~--~~~~~~~~~~ 216 (219)
..|.+- |++|-.+|+ ++..+|.+|+
T Consensus 149 KYFvDINiQN~KLEsLLqsMElAq~g~~rd 178 (305)
T PF15290_consen 149 KYFVDINIQNKKLESLLQSMELAQSGSLRD 178 (305)
T ss_pred HHHhhhhhhHhHHHHHHHHHHHHHhccccc
Confidence 445544 477777777 4566777776
No 35
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=25.57 E-value=51 Score=25.48 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=19.3
Q ss_pred hhhhhcccceeeeeeCCCCccccc
Q 044792 42 ELCVLCGAEVAIVIMSPHKRAFTF 65 (219)
Q Consensus 42 ELs~LCgaevavIvfsp~gk~~~f 65 (219)
=++++|||+|-++|-+.+.+...|
T Consensus 58 L~tt~~dadvi~~v~~and~~s~f 81 (148)
T COG4917 58 LITTLQDADVIIYVHAANDPESRF 81 (148)
T ss_pred HHHHhhccceeeeeecccCccccC
Confidence 467899999999999998874444
No 36
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=25.47 E-value=2.7e+02 Score=21.36 Aligned_cols=29 Identities=31% Similarity=0.513 Sum_probs=23.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 044792 140 SIDDMERDELELYLKSLEKLKTSVKSKVD 168 (219)
Q Consensus 140 ~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~ 168 (219)
++++++.+||.++...++..-..-+.+..
T Consensus 91 ~iE~l~~~el~~~~~~~~~~~~~~~~~~~ 119 (132)
T PF04120_consen 91 DIEDLTEEELEEIRKRYERLAEQARERHD 119 (132)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 89999999999999999887776655543
No 37
>PF04873 EIN3: Ethylene insensitive 3; InterPro: IPR006957 Ethylene insensitive 3 (EIN3) proteins are a family of plant DNA-binding proteins that regulate transcription in response to the gaseous plant hormone ethylene, and are essential for ethylene-mediated responses. In the presence of ethylene, dark-grown dicotyledonous seedlings undergo dramatic morphological changes collectively known as the 'triple response'. In Arabidopsis, these changes consist of a radial swelling of the hypocotyl, an exaggeration in the curvature of the apical hook, and the inhibition of cell elongation in the hypocotyl and root.; GO: 0005634 nucleus; PDB: 1WIJ_A.
Probab=25.08 E-value=24 Score=31.69 Aligned_cols=39 Identities=18% Similarity=0.222 Sum_probs=0.0
Q ss_pred cchhhhhhhhhhhhcccceee-eeeCCCCcccccCCCCCc
Q 044792 33 KKGLFNKASELCVLCGAEVAI-VIMSPHKRAFTFGHPNPD 71 (219)
Q Consensus 33 r~GL~KKa~ELs~LCgaevav-Ivfsp~gk~~~f~~psv~ 71 (219)
..||+|=+-=..-||+|..+| =+.+..||+.+|++|+..
T Consensus 53 qd~ilkym~~~m~~~n~~gfvy~~~~~~~k~~~~~s~slr 92 (354)
T PF04873_consen 53 QDGILKYMFPEMELCNAPGFVYTIISSSGKPVEGVSPSLR 92 (354)
T ss_dssp ----------------------------------------
T ss_pred hhHHHHhhccccccccCceeeecCCCCCCCccCCcCCccc
Confidence 345555556668999999999 888889999999999976
No 38
>PF13252 DUF4043: Protein of unknown function (DUF4043)
Probab=24.94 E-value=35 Score=30.48 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=18.5
Q ss_pred hhhhhhhhcccceeeeeeCCCCc
Q 044792 39 KASELCVLCGAEVAIVIMSPHKR 61 (219)
Q Consensus 39 Ka~ELs~LCgaevavIvfsp~gk 61 (219)
.+-.-++||||.++++.|+..+.
T Consensus 270 ~~v~ralLlGaQA~~~A~G~~~~ 292 (341)
T PF13252_consen 270 VAVARALLLGAQALVIAFGKSGS 292 (341)
T ss_pred cceeeeeeechhheeeeeeccCC
Confidence 34566899999999999999544
No 39
>PF09158 MotCF: Bacteriophage T4 MotA, C-terminal; InterPro: IPR015241 Transcription factor MotA is required for the activation of middle promoters in Bacteriophage T4, in addition to phage T4 co-activator AsiA, and sigma-70-containing Escherichia coli RNA polymerase. Phage T4 middle promoters have the sigma70 -10 DNA element, but not the -35 element; instead, they have a MotA box at -30 to which the transcription factor MotA binds []. MotA and AsiA interact with the C-terminal of sigma70 (region 4), which normally binds the -35 element and the beta-flap, thereby diverting sigma70 away from host promoters that require -35 element-binding to phage T4 middle promoters. Transcription factor MotA has two domains: an N-terminal domain required for binding to sigma70, and a C-terminal domain required for binding to the -30 MotA box element in the phage T4 middle promoter. This entry represents the C-terminal domain of MotA factors, which adopts a compact alpha/beta structure comprising three alpha-helices and six beta-strands in the order: alpha1-beta1-beta2-beta3-beta4-alpha2-beta5-beta6-alpha3. In this architecture, the domain's hydrophobic core is at the sheet-helix interface, and the second surface of the beta-sheet is completely exposed. It contains a DNA-binding motif, with a consensus sequence containing nine base pairs (5'-TTTGCTTTA-3'), that appears to bind to various mot boxes, allowing access to the minor groove towards the 5'-end of this sequence and the major groove towards the 3'-end [].; PDB: 1KAF_B.
Probab=24.88 E-value=30 Score=25.34 Aligned_cols=53 Identities=25% Similarity=0.436 Sum_probs=32.9
Q ss_pred cceeeEe-cCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCCCchhhhhhhcc
Q 044792 13 KIEIKRV-ERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLTG 80 (219)
Q Consensus 13 Ki~i~~I-~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl~Ry~~~ 80 (219)
+|+++-+ +|.++-.++|.||-.|+-+ +=....|..-.||.--.+.++..|.+.
T Consensus 19 ~ie~K~~~~~RSN~~i~f~KRt~Girq---------------fEi~n~G~~RI~gYk~se~~~~~f~sl 72 (103)
T PF09158_consen 19 KIEVKEIVIDRSNYEIRFKKRTKGIRQ---------------FEIRNKGEFRIFGYKMSEEIIKKFTSL 72 (103)
T ss_dssp T--EEEEEEETTEEEEEEEEEETTEEE---------------EEEETTSEEEEEEES--HHHHHHHHHT
T ss_pred ceeeeeeEeeccceEEeeecccCceeE---------------EEEecCCcEEEEEEcCCHHHHHHHHhc
Confidence 4677765 7889999999999999532 222345655555555455677777553
No 40
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=23.95 E-value=52 Score=23.10 Aligned_cols=15 Identities=20% Similarity=0.310 Sum_probs=9.2
Q ss_pred CCchhhhHHHHHHhh
Q 044792 192 IDFGSEFDDLCCLLE 206 (219)
Q Consensus 192 ~~f~~e~~~l~~~~~ 206 (219)
..|..+|+.|...+.
T Consensus 60 ~~FE~~HP~l~~~lr 74 (85)
T PF14357_consen 60 ERFEASHPKLAGILR 74 (85)
T ss_pred HHHHHhCCcHHHHHH
Confidence 457777766665543
No 41
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=23.87 E-value=4.2e+02 Score=21.87 Aligned_cols=68 Identities=22% Similarity=0.332 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044792 95 EKLERLKQEYVELLNRLKEEEKKRDEIAKKRGNDRANGVFWWDQYSIDDMERDELELYLKSLEKLKTSVKSKVDELAA 172 (219)
Q Consensus 95 ~~~~~l~~~~~~l~~qlek~ekk~~e~l~~~~~~~~~~~~~w~~~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~Ll~ 172 (219)
+....|..-+.....+++. ..-+..-++.+.+.. .. .|- .....|..+...++..+..++..++.+=.
T Consensus 97 ~d~~~w~~al~na~a~leh-q~~R~~NLeLl~~~g-~n-aW~-------~~n~~Le~~~~~le~~l~~~k~~ie~vN~ 164 (221)
T PF05700_consen 97 NDVEAWKEALDNAYAQLEH-QRLRLENLELLSKYG-EN-AWL-------IHNEQLEAMLKRLEKELAKLKKEIEEVNR 164 (221)
T ss_pred ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-HH-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888887777777 444444454444332 21 242 22468888888888888888888877743
No 42
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=23.87 E-value=38 Score=27.75 Aligned_cols=28 Identities=18% Similarity=0.372 Sum_probs=19.6
Q ss_pred hcccceeeeeeCCCCcccccCCCCCchhhhhhhc
Q 044792 46 LCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLT 79 (219)
Q Consensus 46 LCgaevavIvfsp~gk~~~f~~psv~~Vl~Ry~~ 79 (219)
--||++||+|||.++.. |++++++=|..
T Consensus 90 yrgaqa~vLVFSTTDr~------SFea~~~w~~k 117 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDRY------SFEATLEWYNK 117 (246)
T ss_pred hccccceEEEEecccHH------HHHHHHHHHHH
Confidence 35999999999998762 23456665543
No 43
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=23.45 E-value=2.3e+02 Score=22.16 Aligned_cols=33 Identities=9% Similarity=0.237 Sum_probs=27.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044792 140 SIDDMERDELELYLKSLEKLKTSVKSKVDELAA 172 (219)
Q Consensus 140 ~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~Ll~ 172 (219)
++..||+++|..+...++.-+.-+..-+..|.+
T Consensus 9 dltkLsleQL~~lk~q~dqEl~~lq~Sl~~L~~ 41 (153)
T KOG3048|consen 9 DLTKLSLEQLGALKKQFDQELNFLQDSLNALKG 41 (153)
T ss_pred ChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999988888777777666654
No 44
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=22.68 E-value=3e+02 Score=19.83 Aligned_cols=27 Identities=22% Similarity=0.420 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044792 99 RLKQEYVELLNRLKEEEKKRDEIAKKR 125 (219)
Q Consensus 99 ~l~~~~~~l~~qlek~ekk~~e~l~~~ 125 (219)
.+..++++|++++..++.+..|.+-.+
T Consensus 7 ~I~~eI~kLqe~lk~~e~keAERigRi 33 (98)
T PRK13848 7 KIREEIAKLQEQLKQAETREAERIGRI 33 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999988777766666544
No 45
>PF06020 Roughex: Drosophila roughex protein; InterPro: IPR009259 This family consists of several roughex (RUX) proteins specific to Drosophila species. Roughex can influence the intracellular distribution of cyclin A and is therefore defined as a distinct and specialised cell cycle inhibitor for cyclin A-dependent kinase activity []. Rux is though to regulate the metaphase to anaphase transition during development [].
Probab=22.23 E-value=40 Score=29.42 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=13.1
Q ss_pred hhhcccceeeeeeCCC
Q 044792 44 CVLCGAEVAIVIMSPH 59 (219)
Q Consensus 44 s~LCgaevavIvfsp~ 59 (219)
.-+||++||++||--.
T Consensus 183 ~~~~~~EICLavYek~ 198 (334)
T PF06020_consen 183 GQVSGFEICLAVYEKG 198 (334)
T ss_pred CccccceEEeeehhhh
Confidence 4579999999999554
No 46
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=21.53 E-value=35 Score=29.89 Aligned_cols=43 Identities=30% Similarity=0.529 Sum_probs=27.4
Q ss_pred hhhhhhhhhhccc-ceeeeee-CCCCc-ccccCCCC--Cchhhhhhhc
Q 044792 37 FNKASELCVLCGA-EVAIVIM-SPHKR-AFTFGHPN--PDDVLDRFLT 79 (219)
Q Consensus 37 ~KKa~ELs~LCga-evavIvf-sp~gk-~~~f~~ps--v~~Vl~Ry~~ 79 (219)
++++.+|.||.+. ++++-++ |++|+ .|.+|||. .+.+.+.|.+
T Consensus 201 i~~~~~L~vLa~s~~~G~~l~~~~d~r~vfi~GH~EYd~~TL~~EY~R 248 (298)
T PF04204_consen 201 IKKAPGLEVLAESEEAGVFLVASKDGRQVFITGHPEYDADTLAKEYRR 248 (298)
T ss_dssp HCT-TTEEEEEEETTTEEEEEEECCCTEEEE-S-TT--TTHHHHHHHH
T ss_pred HhcCCCcEEEeccCCcceEEEEcCCCCEEEEeCCCccChhHHHHHHHH
Confidence 4678999999864 4555444 45665 78899997 5677777753
No 47
>PRK00098 GTPase RsgA; Reviewed
Probab=21.23 E-value=71 Score=27.63 Aligned_cols=46 Identities=24% Similarity=0.455 Sum_probs=31.6
Q ss_pred ecccccchhhhhhh--hhhhhcccceeeeeeCCCCcccccCCCCCchhhhhhhc
Q 044792 28 TFSKRKKGLFNKAS--ELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLT 79 (219)
Q Consensus 28 Tf~KRr~GL~KKa~--ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl~Ry~~ 79 (219)
.-..|++-|..++. +-.+.-+++++++||+.....+. ...++||+.
T Consensus 58 ~i~~R~~~l~R~~~~~~q~iaaniD~vllV~d~~~p~~~------~~~idr~L~ 105 (298)
T PRK00098 58 EIHERKNLLVRPPIFKSKLIAANVDQAVLVFAAKEPDFS------TDLLDRFLV 105 (298)
T ss_pred EEeCCCceEECCCCccccceeecCCEEEEEEECCCCCCC------HHHHHHHHH
Confidence 46677777776664 66678999999999998653221 245677753
No 48
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=21.19 E-value=4.7e+02 Score=24.23 Aligned_cols=21 Identities=5% Similarity=0.235 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 044792 147 DELELYLKSLEKLKTSVKSKV 167 (219)
Q Consensus 147 eeL~~L~~~Le~~l~~V~~R~ 167 (219)
+|+..|+..++.+.+.+-..+
T Consensus 105 ~ei~~l~~~~~~~~~~i~~~L 125 (431)
T PLN03230 105 AQIAELEERYDQVRRELYSRL 125 (431)
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 567777777777666665443
No 49
>PF12212 PAZ_siRNAbind: Piwi/Argonaute/Zwille siRNA-binding domain; InterPro: IPR021103 This entry represents a siRNA binding repeat found in bacterial and archaeal proteins, which is approximately 50 amino acids in length. There is a conserved LKDIL sequence motif and a single completely conserved residue L that may be functionally important []. ; PDB: 1Z26_A 1Z25_A 1U04_A 3DA5_B.
Probab=20.66 E-value=57 Score=20.43 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=18.2
Q ss_pred hhhhHHHHHHhhhccCCCCcccC
Q 044792 195 GSEFDDLCCLLEGTNEDGILRNL 217 (219)
Q Consensus 195 ~~e~~~l~~~~~~~~~~~~~~~~ 217 (219)
..+.+.+...|....|+|||+++
T Consensus 6 ~kn~kaie~iL~~akEN~iLKDI 28 (47)
T PF12212_consen 6 RKNSKAIEEILKVAKENGILKDI 28 (47)
T ss_dssp TT-HHHHHHHHHHTTTTEEEEET
T ss_pred ccChHHHHHHHHHHHhhcHHHHH
Confidence 34567788899999999999875
No 50
>KOG0183 consensus 20S proteasome, regulatory subunit alpha type PSMA7/PRE6 [Posttranslational modification, protein turnover, chaperones]
Probab=20.20 E-value=54 Score=27.41 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=12.6
Q ss_pred cceeeeeeCCCCcccc
Q 044792 49 AEVAIVIMSPHKRAFT 64 (219)
Q Consensus 49 aevavIvfsp~gk~~~ 64 (219)
-+-|+-||||+|.++.
T Consensus 4 ydraltvFSPDGhL~Q 19 (249)
T KOG0183|consen 4 YDRALTVFSPDGHLFQ 19 (249)
T ss_pred cccceEEECCCCCEEe
Confidence 3568889999998654
Done!