Query 044792
Match_columns 219
No_of_seqs 137 out of 1543
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 11:38:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044792.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044792hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p57_A Myocyte-specific enhanc 100.0 2.5E-37 8.5E-42 219.5 1.1 78 10-87 1-78 (90)
2 1egw_A MADS box transcription 100.0 2.1E-37 7.3E-42 214.7 -0.5 74 10-83 1-74 (77)
3 1hbx_A SRF, serum response fac 100.0 5.5E-37 1.9E-41 218.6 -0.3 76 4-79 5-80 (92)
4 1mnm_A Protein (MCM1 transcrip 100.0 1.2E-36 4E-41 219.6 0.4 75 5-79 12-86 (100)
5 1k6o_B SRF, serum response fac 100.0 2.4E-36 8.1E-41 219.4 -0.1 73 5-77 5-77 (103)
6 1p9i_A Cortexillin I/GCN4 hybr 61.5 14 0.00047 19.5 3.5 27 147-173 2-28 (31)
7 1j1d_C Troponin I, TNI; THIN f 56.9 56 0.0019 24.1 9.7 31 140-170 54-84 (133)
8 1j1e_C Troponin I, TNI; THIN f 48.5 93 0.0032 24.1 8.7 29 140-168 54-82 (180)
9 1z56_A Ligase interacting fact 43.4 45 0.0015 27.1 5.6 30 17-46 117-146 (246)
10 2ke4_A CDC42-interacting prote 39.4 93 0.0032 21.5 7.6 64 95-163 15-78 (98)
11 1g6u_A Domain swapped dimer; d 33.7 70 0.0024 18.4 5.2 24 142-165 15-38 (48)
12 3tso_C RAB11 family-interactin 30.7 1.1E+02 0.0037 20.2 4.9 31 140-170 10-40 (75)
13 2zvv_Y Cyclin-dependent kinase 28.3 16 0.00054 18.8 0.4 13 22-34 14-26 (26)
14 2phn_A F420-0:gamma-glutamyl l 26.3 8.5 0.00029 31.7 -1.3 29 41-69 137-165 (254)
15 3twe_A Alpha4H; unknown functi 25.4 75 0.0026 16.1 3.7 18 98-115 4-21 (27)
16 3fx7_A Putative uncharacterize 24.3 1.6E+02 0.0054 20.3 5.1 58 143-206 5-62 (94)
17 1ytz_T Troponin T; muscle, THI 23.5 2E+02 0.0067 20.2 7.9 31 140-170 38-68 (107)
18 1j1d_B Troponin T, TNT; THIN f 23.3 90 0.0031 22.0 3.8 31 140-170 38-68 (106)
19 3nrf_A APAG protein; structura 23.2 12 0.00041 26.6 -0.9 42 19-65 21-62 (106)
20 1m2d_A [2Fe-2S] ferredoxin; th 23.1 23 0.0008 24.7 0.7 32 47-79 59-91 (110)
21 2l5g_B Putative uncharacterize 22.8 1E+02 0.0036 17.9 3.3 30 143-172 1-30 (42)
22 2yv5_A YJEQ protein; hydrolase 21.5 51 0.0017 27.2 2.6 45 24-79 60-104 (302)
23 2bw2_A Bypass of forespore C; 21.0 18 0.00061 27.0 -0.3 44 37-81 59-104 (140)
24 3ghg_A Fibrinogen alpha chain; 20.6 4.8E+02 0.016 23.7 8.8 32 126-160 158-189 (562)
No 1
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=2.5e-37 Score=219.51 Aligned_cols=78 Identities=38% Similarity=0.623 Sum_probs=74.2
Q ss_pred CcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCCCchhhhhhhccCCCCccc
Q 044792 10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLTGAGAESSL 87 (219)
Q Consensus 10 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl~Ry~~~~~~~~~~ 87 (219)
||+||+|++|+|+++|+|||+|||.||||||+||||||||+||+|||||+|++|+|++|+++.||+||...+++....
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~~ 78 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESR 78 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCEE
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999877665544
No 2
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=2.1e-37 Score=214.73 Aligned_cols=74 Identities=39% Similarity=0.654 Sum_probs=69.9
Q ss_pred CcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCCCchhhhhhhccCCC
Q 044792 10 GLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLTGAGA 83 (219)
Q Consensus 10 gR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl~Ry~~~~~~ 83 (219)
||+||+|++|+|+++|+|||+|||.||||||+||||||||+||+|||||+|++|+|++|+++.||+||...+++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~~~ 74 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC---
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhccCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999886543
No 3
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=5.5e-37 Score=218.59 Aligned_cols=76 Identities=30% Similarity=0.474 Sum_probs=72.4
Q ss_pred CcccCCCcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCCCchhhhhhhc
Q 044792 4 SKQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLT 79 (219)
Q Consensus 4 ~~~~~mgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl~Ry~~ 79 (219)
.+|++|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||+|||||+|++|+|++|+++.||++|..
T Consensus 5 ~~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G 80 (92)
T 1hbx_A 5 PGKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG 80 (92)
T ss_dssp -CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred cCCCCCCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence 4689999999999999999999999999999999999999999999999999999999999999999999997743
No 4
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=1.2e-36 Score=219.60 Aligned_cols=75 Identities=39% Similarity=0.584 Sum_probs=70.5
Q ss_pred cccCCCcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCCCchhhhhhhc
Q 044792 5 KQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLT 79 (219)
Q Consensus 5 ~~~~mgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl~Ry~~ 79 (219)
++++|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|++..|+++|..
T Consensus 12 ~~~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G 86 (100)
T 1mnm_A 12 NGQQKERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG 86 (100)
T ss_dssp ---CCCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred CCCCCCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999954
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=2.4e-36 Score=219.37 Aligned_cols=73 Identities=32% Similarity=0.502 Sum_probs=71.2
Q ss_pred cccCCCcccceeeEecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCCCchhhhhh
Q 044792 5 KQKNKGLQKIEIKRVERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRF 77 (219)
Q Consensus 5 ~~~~mgR~Ki~i~~I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl~Ry 77 (219)
+|++|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+++.||+++
T Consensus 5 ~k~~mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 5 GKKTRGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp CCSSCCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CCCCCCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999974
No 6
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=61.48 E-value=14 Score=19.51 Aligned_cols=27 Identities=44% Similarity=0.559 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044792 147 DELELYLKSLEKLKTSVKSKVDELAAA 173 (219)
Q Consensus 147 eeL~~L~~~Le~~l~~V~~R~~~Ll~e 173 (219)
++|..|..+|+.--+.++.++++|+..
T Consensus 2 dqlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888888763
No 7
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=56.87 E-value=56 Score=24.05 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=25.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044792 140 SIDDMERDELELYLKSLEKLKTSVKSKVDEL 170 (219)
Q Consensus 140 ~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L 170 (219)
++++||.++|+++-..|...+..+.+-...+
T Consensus 54 ~id~ls~~~L~e~~keLh~~I~~LEeEKYDl 84 (133)
T 1j1d_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYDI 84 (133)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 7899999999999999988888876655444
No 8
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=48.48 E-value=93 Score=24.09 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=23.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 044792 140 SIDDMERDELELYLKSLEKLKTSVKSKVD 168 (219)
Q Consensus 140 ~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~ 168 (219)
++++|+.++|+++-..|...+..+.+-..
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEeEKY 82 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDEERY 82 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999988887777655433
No 9
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=43.35 E-value=45 Score=27.05 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=0.0
Q ss_pred eEecCCCCcceecccccchhhhhhhhhhhh
Q 044792 17 KRVERKSARQVTFSKRKKGLFNKASELCVL 46 (219)
Q Consensus 17 ~~I~n~~~R~vTf~KRr~GL~KKa~ELs~L 46 (219)
..|+....-++|+.||-.||..|..+|+.-
T Consensus 117 ~~iev~~~~~itmrkri~~Itqrlg~ltL~ 146 (246)
T 1z56_A 117 CRMQDDEVWKVVMELESSAIIRKIAELTLH 146 (246)
T ss_dssp ------------------------------
T ss_pred cCceeCCEEEEEEeehhhHHHhhheeEEee
Confidence 445567777999999999999998888654
No 10
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=39.42 E-value=93 Score=21.50 Aligned_cols=64 Identities=22% Similarity=0.232 Sum_probs=40.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcccCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 044792 95 EKLERLKQEYVELLNRLKEEEKKRDEIAKKRGNDRANGVFWWDQYSIDDMERDELELYLKSLEKLKTSV 163 (219)
Q Consensus 95 ~~~~~l~~~~~~l~~qlek~ekk~~e~l~~~~~~~~~~~~~w~~~~l~~Ls~eeL~~L~~~Le~~l~~V 163 (219)
-....|.+.+.+++.++++ +..-.+.+.+|....... +-++ +...+ ..+|.+....|+.+...+
T Consensus 15 qRkkkL~~Ki~el~~ei~k-e~~~regl~Km~~vY~~n-P~~G--D~~s~-~~~L~e~~~kid~L~~el 78 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQK-EVDQREALKKMKDVYEKT-PQMG--DPASL-EPQIAETLSNIERLKLEV 78 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHTHHHHHHHHHHHC-GGGC--CGGGS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcC-CccC--CHHHH-HHHHHHHHHHHHHHHHHH
Confidence 4556788899999999999 655566677776654221 1222 23333 667777777766665554
No 11
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=33.73 E-value=70 Score=18.40 Aligned_cols=24 Identities=17% Similarity=0.328 Sum_probs=16.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 044792 142 DDMERDELELYLKSLEKLKTSVKS 165 (219)
Q Consensus 142 ~~Ls~eeL~~L~~~Le~~l~~V~~ 165 (219)
++++++||..|+..|..+-+++..
T Consensus 15 egfspeelaaleselqalekklaa 38 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAA 38 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 467899998888776655554433
No 12
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=30.66 E-value=1.1e+02 Score=20.18 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=22.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044792 140 SIDDMERDELELYLKSLEKLKTSVKSKVDEL 170 (219)
Q Consensus 140 ~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L 170 (219)
....++-+||.++.-.++.-+..-..++.+|
T Consensus 10 ~y~~ltreELi~l~lk~~~~l~~k~~~v~eL 40 (75)
T 3tso_C 10 GYRSLTYEEVLQELVKHKELLRRKDTHIREL 40 (75)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999988888777776666666555
No 13
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=28.35 E-value=16 Score=18.77 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=9.6
Q ss_pred CCCcceecccccc
Q 044792 22 KSARQVTFSKRKK 34 (219)
Q Consensus 22 ~~~R~vTf~KRr~ 34 (219)
.+.|++-|.||+.
T Consensus 14 hsKRRlvf~~rkp 26 (26)
T 2zvv_Y 14 HSKRRLIFSXXXX 26 (26)
T ss_pred hhhceEEEEeccC
Confidence 3578888888863
No 14
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=26.26 E-value=8.5 Score=31.72 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=23.4
Q ss_pred hhhhhhcccceeeeeeCCCCcccccCCCC
Q 044792 41 SELCVLCGAEVAIVIMSPHKRAFTFGHPN 69 (219)
Q Consensus 41 ~ELs~LCgaevavIvfsp~gk~~~f~~ps 69 (219)
.+|.-.+|++|+|||+.+.|++|-.|.|.
T Consensus 137 ~~l~~~~G~~v~ViI~Dt~gr~~r~g~~~ 165 (254)
T 2phn_A 137 RRILELTGKRVGVIITDTNGRCFRRGVVG 165 (254)
T ss_dssp HHHHHHHSCCCEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHHCCCEEEEEEcCCCchhhccCcc
Confidence 34557889999999999999887766654
No 15
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=25.42 E-value=75 Score=16.12 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044792 98 ERLKQEYVELLNRLKEEE 115 (219)
Q Consensus 98 ~~l~~~~~~l~~qlek~e 115 (219)
.++..+++.+++.+.++.
T Consensus 4 delykeledlqerlrklr 21 (27)
T 3twe_A 4 DELYKELEDLQERLRKLR 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456777888888777743
No 16
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=24.32 E-value=1.6e+02 Score=20.27 Aligned_cols=58 Identities=17% Similarity=0.304 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccccCCCCCCCchhhhHHHHHHhh
Q 044792 143 DMERDELELYLKSLEKLKTSVKSKVDELAAASVASNNFVNQFNIDNNIPIDFGSEFDDLCCLLE 206 (219)
Q Consensus 143 ~Ls~eeL~~L~~~Le~~l~~V~~R~~~Ll~e~~~~~~~~~~~~~~~~~~~~f~~e~~~l~~~~~ 206 (219)
-.+++||..|...|+.....+++....|...=.... . -...+-..|.++-..|.+.|.
T Consensus 5 ~~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~----s--WqDqkr~kFee~fe~l~s~l~ 62 (94)
T 3fx7_A 5 QMDTEEVREFVGHLERFKELLREEVNSLSNHFHNLE----S--WRDARRDKFSEVLDNLKSTFN 62 (94)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----S--CCSHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----h--HhhHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999998876544311 0 111222456666666665554
No 17
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=23.45 E-value=2e+02 Score=20.21 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=25.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044792 140 SIDDMERDELELYLKSLEKLKTSVKSKVDEL 170 (219)
Q Consensus 140 ~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L 170 (219)
++++|+.++|.++-..|...+..+.+-...|
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~lEeEKYDl 68 (107)
T 1ytz_T 38 NIDHLNEDKLRDKAKELWDWLYQLQTEKYDF 68 (107)
T ss_dssp CCSSSCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 7899999999999999988888876654444
No 18
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=23.33 E-value=90 Score=21.96 Aligned_cols=31 Identities=23% Similarity=0.271 Sum_probs=25.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044792 140 SIDDMERDELELYLKSLEKLKTSVKSKVDEL 170 (219)
Q Consensus 140 ~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L 170 (219)
++++||.++|.++-..|...+..+.+-.-.|
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDl 68 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDL 68 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 7899999999999999988888876654444
No 19
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=23.22 E-value=12 Score=26.57 Aligned_cols=42 Identities=21% Similarity=0.185 Sum_probs=32.3
Q ss_pred ecCCCCcceecccccchhhhhhhhhhhhcccceeeeeeCCCCccccc
Q 044792 19 VERKSARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTF 65 (219)
Q Consensus 19 I~n~~~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f 65 (219)
|.++.....||.=.-..|.++.-+|+.+ |++.|+|.|+-|-.
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~-----C~~a~~~~gkef~l 62 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNS-----CLVAQSAAGQSFRL 62 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTC-----EEEEEETTSCEEEE
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchh-----hheeeCcCCCEEEe
Confidence 3455556677777888888999999966 68999999986543
No 20
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=23.08 E-value=23 Score=24.68 Aligned_cols=32 Identities=16% Similarity=0.326 Sum_probs=20.9
Q ss_pred cccceeeeeeCCCCcccccCCCC-Cchhhhhhhc
Q 044792 47 CGAEVAIVIMSPHKRAFTFGHPN-PDDVLDRFLT 79 (219)
Q Consensus 47 CgaevavIvfsp~gk~~~f~~ps-v~~Vl~Ry~~ 79 (219)
|+-.-.|+|+ |+|..|...+|. +..||+.+..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 4444445666 888766666664 7788988654
No 21
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=22.79 E-value=1e+02 Score=17.88 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044792 143 DMERDELELYLKSLEKLKTSVKSKVDELAA 172 (219)
Q Consensus 143 ~Ls~eeL~~L~~~Le~~l~~V~~R~~~Ll~ 172 (219)
+++-+||.+=...++.=+.+++.++.++..
T Consensus 1 ~~tk~~l~qkI~kVdrEI~Kte~kI~~lqk 30 (42)
T 2l5g_B 1 GLSKEELIQNMDRVDREITMVEQQISKLKK 30 (42)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888888888887777654
No 22
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=21.48 E-value=51 Score=27.15 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=31.1
Q ss_pred CcceecccccchhhhhhhhhhhhcccceeeeeeCCCCcccccCCCCCchhhhhhhc
Q 044792 24 ARQVTFSKRKKGLFNKASELCVLCGAEVAIVIMSPHKRAFTFGHPNPDDVLDRFLT 79 (219)
Q Consensus 24 ~R~vTf~KRr~GL~KKa~ELs~LCgaevavIvfsp~gk~~~f~~psv~~Vl~Ry~~ 79 (219)
..-.....|+..|.. +..-+|+++++||+.+.+.++| ..+++|+.
T Consensus 60 g~I~~i~er~~~l~r-----~~~~naD~vliV~d~~~p~~s~------~~l~~~l~ 104 (302)
T 2yv5_A 60 FAIEEVEERKNLLIR-----PKVANVDRVIIVETLKMPEFNN------YLLDNMLV 104 (302)
T ss_dssp EEEEEECCCSCEEET-----TEEESCCEEEEEECSTTTTCCH------HHHHHHHH
T ss_pred EEEEeeCChHHHHhH-----HHHHhcCEEEEEEECCCCCCCH------HHHHHHHH
Confidence 334445666666666 3688999999999987665444 35677764
No 23
>2bw2_A Bypass of forespore C; sporulation, signaling protein, BOFC, sigmak checkpoint; NMR {Bacillus subtilis}
Probab=21.03 E-value=18 Score=27.03 Aligned_cols=44 Identities=20% Similarity=0.320 Sum_probs=34.1
Q ss_pred hhhhhhhhhhcccceeeeeeCCCCccccc-CCCCCc-hhhhhhhccC
Q 044792 37 FNKASELCVLCGAEVAIVIMSPHKRAFTF-GHPNPD-DVLDRFLTGA 81 (219)
Q Consensus 37 ~KKa~ELs~LCgaevavIvfsp~gk~~~f-~~psv~-~Vl~Ry~~~~ 81 (219)
-|++.+||-+|-...-+=| +.+|.+..| |.|.-. .||..|-..+
T Consensus 59 ~k~VdDisP~~K~ngY~Gi-~~dG~LslF~G~P~~~~kvI~sffqId 104 (140)
T 2bw2_A 59 RKQMDDISPLSKVNGYIGV-SDNGVISTFHGRPEPASEPIQSFFQID 104 (140)
T ss_dssp EEECSSCCTGGGTCCCEEE-ETTTEEEEBSSSCSTTSCBSCCCCCCC
T ss_pred EEEccccChHHhcCceEEE-ecCCeEEEEeCCCccCcceeeeeeccC
Confidence 3557899999987766544 477998888 889877 9999996644
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.56 E-value=4.8e+02 Score=23.66 Aligned_cols=32 Identities=13% Similarity=-0.002 Sum_probs=16.1
Q ss_pred HhhhcCCCcccCCCCCCCCCHHHHHHHHHHHHHHH
Q 044792 126 GNDRANGVFWWDQYSIDDMERDELELYLKSLEKLK 160 (219)
Q Consensus 126 ~~~~~~~~~~w~~~~l~~Ls~eeL~~L~~~Le~~l 160 (219)
++.|.+-|.-. --..++.+....+..+|+.+.
T Consensus 158 irsCKgsCsr~---~~~~vd~~sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 158 IRSCRGSCSRA---LAREVDLKDYEDQQKQLEQVI 189 (562)
T ss_dssp HHHGGGTBSCC---CCCCCCHHHHHHHHHHHHHHH
T ss_pred HHhccccccch---heeecchHHHHHHHHHHHHHh
Confidence 34555655211 112455666666666665543
Done!