BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044794
(297 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UAS|A Chain A, Crystal Structure Of Rice Alpha-Galactosidase
Length = 362
Score = 303 bits (777), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 164/305 (53%), Positives = 193/305 (63%), Gaps = 33/305 (10%)
Query: 20 HGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQ 79
GN TFPSGIKALADYVHAKGL+LGIYSDAG +TCSN MPGSL HE QD TFA
Sbjct: 62 QGNFVPNRQTFPSGIKALADYVHAKGLKLGIYSDAGSQTCSNKMPGSLDHEEQDVKTFAS 121
Query: 80 WGIDYLKYDNCFHDGSKPQERYTKMSYALLKAGRPILYSI--WGTK--IQRNGLVRNAWR 135
WG+DYLKYDNC G ERYT+MS A+ G+ I +S+ WG + G + N+WR
Sbjct: 122 WGVDYLKYDNCNDAGRSVMERYTRMSNAMKTYGKNIFFSLCEWGKENPATWAGRMGNSWR 181
Query: 136 TTGDIRDKWESITSIADQNNVWGRFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMK 195
TTGDI D W S+TS AD+N+ W +AGPG WNDPDMLEVGNGGMS EYRSHFSIW L K
Sbjct: 182 TTGDIADNWGSMTSRADENDQWAAYAGPGGWNDPDMLEVGNGGMSEAEYRSHFSIWALAK 241
Query: 196 VSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRSKGALEF---PVT----- 247
+PLLIG D+RS S +T IL N EVI VNQD LGV +K++S LE P++
Sbjct: 242 -APLLIGCDVRSMSQQTKNILSNSEVIAVNQDSLGVQGKKVQSDNGLEVWAGPLSNNRKA 300
Query: 248 ----------------WREIGIPLPAPVIVRDLWRYEHSFVSMNKRYGLIAYVDPHACKM 291
W IG+ V RDLW + SF + + + A V PH CKM
Sbjct: 301 VVLWNRQSYQATITAHWSNIGLAGSVAVTARDLWAHS-SFAAQGQ---ISASVAPHDCKM 356
Query: 292 YILTP 296
Y+LTP
Sbjct: 357 YVLTP 361
>pdb|1KTB|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
pdb|1KTC|A Chain A, The Structure Of Alpha-N-Acetylgalactosaminidase
Length = 405
Score = 191 bits (485), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 140/237 (59%), Gaps = 15/237 (6%)
Query: 19 GHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFA 78
G L FP GIKALADYVHA+GL+LGIY D G TC +L QD TFA
Sbjct: 71 AEGRLVPDPERFPRGIKALADYVHARGLKLGIYGDLGRLTCGGYPGTTLDRVEQDAQTFA 130
Query: 79 QWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAGRPILYSI-W-----GTKIQRN----G 128
+WG+D LK D C+ G + + Y +M+ AL GRPI+YS W G + N G
Sbjct: 131 EWGVDMLKLDGCYSSGKEQAQGYPQMARALNATGRPIVYSCSWPAYQGGLPPKVNYTLLG 190
Query: 129 LVRNAWRTTGDIRDKWESITSIAD----QNNVWGRFAGPGRWNDPDMLEVGNGGMSLEEY 184
+ N WR DI+D W+S+ SI D +V FAGPG WNDPDML +GN G+S E+
Sbjct: 191 EICNLWRNYDDIQDSWDSVLSIVDWFFTNQDVLQPFAGPGHWNDPDMLIIGNFGLSYEQS 250
Query: 185 RSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRSKGA 241
RS ++W +M +PLL+ D+R+ S KIL N+ +I +NQDPLG+ R+I +G+
Sbjct: 251 RSQMALWTIM-AAPLLMSTDLRTISPSAKKILQNRLMIQINQDPLGIQGRRIIKEGS 306
>pdb|3A5V|A Chain A, Crystal Structure Of Alpha-Galactosidase I From
Mortierella Vinacea
Length = 397
Score = 174 bits (442), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 153/303 (50%), Gaps = 61/303 (20%)
Query: 23 LRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGI 82
L A + FP GIK L D +H GL+ GIYS AG TC + SLG+E D T+A+WGI
Sbjct: 65 LLADPTKFPRGIKPLVDDIHNLGLKAGIYSSAGTLTCGGHI-ASLGYEDIDAKTWAKWGI 123
Query: 83 DYLKYDNCFHDGSK-----PQERYTKMSYALLKAGRPILYSI--WGTKIQRN--GLVRNA 133
DYLKYDNC++ G +RY M AL K GRP+LYS+ WG N + N+
Sbjct: 124 DYLKYDNCYNQGQSGTPKLSYDRYKAMGNALNKTGRPMLYSLCNWGEDGPWNFASTISNS 183
Query: 134 WRTTGDIRDKWE--------------------SITSIADQNNVWGRFAGPGRWNDPDMLE 173
WR +GD+ D + S+ +I ++ + A G WND DMLE
Sbjct: 184 WRISGDVYDNFNRPDPACPCTTYDCVLAGFRCSVMNIINKAVAVSQKARSGGWNDLDMLE 243
Query: 174 VGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPR 233
VGNGGM+ EEYR H++IW +K SPL++G D+ + + T +I+ NKEVI VNQD P
Sbjct: 244 VGNGGMNQEEYRVHYTIWAALK-SPLILGNDVTNITNTTKEIIMNKEVIAVNQDSSFSPA 302
Query: 234 RKIRSKG------------------------ALEFPVTWREI------GIPLPAPVIVRD 263
+I KG A + TW +I + + VRD
Sbjct: 303 NRIWVKGDQQLFSGNLANNTQVVILLNAGDSAAKMTATWDDIWVYNLPNVDSSRSIEVRD 362
Query: 264 LWR 266
LW+
Sbjct: 363 LWK 365
>pdb|3H53|A Chain A, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
pdb|3H53|B Chain B, Crystal Structure Of Human Alpha-N-Acetylgalactosaminidase
pdb|3H54|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H54|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase,Complex With Galnac
pdb|3H55|A Chain A, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3H55|B Chain B, Crystal Structure Of Human
Alpha-N-Acetylgalactosaminidase, Complex With Galactose
pdb|3IGU|A Chain A, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|3IGU|B Chain B, Crystal Structure Of Human
Alpha-n-acetylgalactosaminidase, Covalent Intermediate
pdb|4DO4|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO4|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO5|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|A Chain A, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
pdb|4DO6|B Chain B, Pharmacological Chaperones For Human
Alpha-N-Acetylgalactosaminidase
Length = 400
Score = 174 bits (441), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 100/239 (41%), Positives = 139/239 (58%), Gaps = 21/239 (8%)
Query: 21 GNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQW 80
G L FP GI LADYVH+ GL+LGIY+D G TC +L +QD TFA+W
Sbjct: 72 GRLMPDPKRFPHGIPFLADYVHSLGLKLGIYADMGNFTCMGYPGTTLDKVVQDAQTFAEW 131
Query: 81 GIDYLKYDNCFHDGSKPQER---YTKMSYALLKAGRPILYSI-WGT-------KIQRNGL 129
+D LK D CF S P+ER Y KM+ AL GRPI +S W ++Q + L
Sbjct: 132 KVDMLKLDGCF---STPEERAQGYPKMAAALNATGRPIAFSCSWPAYEGGLPPRVQYSLL 188
Query: 130 --VRNAWRTTGDIRDKWESITSI----ADQNNVWGRFAGPGRWNDPDMLEVGNGGMSLEE 183
+ N WR DI+D W S+ SI + ++ AGPG WNDPDML +GN G+SLE+
Sbjct: 189 ADICNLWRNYDDIQDSWWSVLSILNWFVEHQDILQPVAGPGHWNDPDMLLIGNFGLSLEQ 248
Query: 184 YRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRSKGAL 242
R+ ++W ++ +PLL+ D+R+ S + + IL N +I +NQDPLG+ R+I + +L
Sbjct: 249 SRAQMALWTVL-AAPLLMSTDLRTISAQNMDILQNPLMIKINQDPLGIQGRRIHKEKSL 306
>pdb|1R46|A Chain A, Structure Of Human Alpha-galactosidase
pdb|1R46|B Chain B, Structure Of Human Alpha-galactosidase
pdb|1R47|A Chain A, Structure Of Human Alpha-Galactosidase
pdb|1R47|B Chain B, Structure Of Human Alpha-Galactosidase
pdb|3GXN|A Chain A, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXN|B Chain B, Crystal Structure Of Apo Alpha-Galactosidase A At Ph 4.5
pdb|3GXP|A Chain A, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXP|B Chain B, Crystal Structure Of Acid-alpha-galactosidase A Complexed
With Galactose At Ph 4.5
pdb|3GXT|A Chain A, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3GXT|B Chain B, Crystal Structure Of Alpha-Galactosidase A At Ph 4.5
Complexed With 1- Deoxygalactonijirimycin
pdb|3HG2|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG2|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 1. Empty
Active Site
pdb|3HG4|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG4|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 3. Covalent
Intermediate
pdb|3HG5|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3HG5|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 4. Product
Bound
pdb|3S5Y|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Y|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3S5Z|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 398
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 135/242 (55%), Gaps = 24/242 (9%)
Query: 20 HGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQ 79
G L+A FP GI+ LA+YVH+KGL+LGIY+D G +TC+ PGS G+ D TFA
Sbjct: 72 EGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGNKTCAG-FPGSFGYYDIDAQTFAD 130
Query: 80 WGIDYLKYDNCFHDG-SKPQERYTKMSYALLKAGRPILYS------IWGTKIQRNGLVR- 131
WG+D LK+D C+ D + Y MS AL + GR I+YS +W + +R
Sbjct: 131 WGVDLLKFDGCYCDSLENLADGYKHMSLALNRTGRSIVYSCEWPLYMWPFQKPNYTEIRQ 190
Query: 132 --NAWRTTGDIRDKWESITSIADQNNVWGRF--------AGPGRWNDPDMLEVGNGGMSL 181
N WR DI D W+SI SI D W F AGPG WNDPDML +GN G+S
Sbjct: 191 YCNHWRNFADIDDSWKSIKSILD----WTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSW 246
Query: 182 EEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRSKGA 241
+ + ++W +M +PL + D+R S + +L +K+VI +NQDPLG ++R
Sbjct: 247 NQQVTQMALWAIM-AAPLFMSNDLRHISPQAKALLQDKDVIAINQDPLGKQGYQLRQGDN 305
Query: 242 LE 243
E
Sbjct: 306 FE 307
>pdb|3LX9|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LX9|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXA|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXB|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|A Chain A, Interconversion Of Human Lysosomal Enzyme Specificities
pdb|3LXC|B Chain B, Interconversion Of Human Lysosomal Enzyme Specificities
Length = 404
Score = 171 bits (434), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 135/242 (55%), Gaps = 24/242 (9%)
Query: 20 HGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQ 79
G L+A FP GI+ LA+YVH+KGL+LGIY+D G +TC+ PGS G+ D TFA
Sbjct: 72 EGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGNKTCAG-FPGSFGYYDIDAQTFAD 130
Query: 80 WGIDYLKYDNCFHDG-SKPQERYTKMSYALLKAGRPILYS------IWGTKIQRNGLVR- 131
WG+D LK+D C+ D + Y MS AL + GR I+YS +W + +R
Sbjct: 131 WGVDLLKFDGCYCDSLENLADGYKHMSLALNRTGRSIVYSCSWPAYMWPFQKPNYTEIRQ 190
Query: 132 --NAWRTTGDIRDKWESITSIADQNNVWGRF--------AGPGRWNDPDMLEVGNGGMSL 181
N WR DI D W+SI SI D W F AGPG WNDPDML +GN G+S
Sbjct: 191 YCNHWRNFADIDDSWKSIKSILD----WTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSW 246
Query: 182 EEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRSKGA 241
+ + ++W +M +PL + D+R S + +L +K+VI +NQDPLG ++R
Sbjct: 247 NQQVTQMALWAIM-AAPLFMSNDLRHISPQAKALLQDKDVIAINQDPLGKQGYQLRQGDN 305
Query: 242 LE 243
E
Sbjct: 306 FE 307
>pdb|3HG3|A Chain A, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3HG3|B Chain B, Human Alpha-Galactosidase Catalytic Mechanism 2. Substrate
Bound
pdb|3TV8|A Chain A, Pharmacological Chaperoning In Human Alpha-Galactosidase
pdb|3TV8|B Chain B, Pharmacological Chaperoning In Human Alpha-Galactosidase
Length = 404
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 98/242 (40%), Positives = 134/242 (55%), Gaps = 24/242 (9%)
Query: 20 HGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQ 79
G L+A FP GI+ LA+YVH+KGL+LGIY+D G +TC+ PGS G+ D TFA
Sbjct: 72 EGRLQADPQRFPHGIRQLANYVHSKGLKLGIYADVGNKTCAG-FPGSFGYYDIDAQTFAD 130
Query: 80 WGIDYLKYDNCFHDG-SKPQERYTKMSYALLKAGRPILYS------IWGTKIQRNGLVR- 131
WG+D LK+ C+ D + Y MS AL + GR I+YS +W + +R
Sbjct: 131 WGVDLLKFAGCYCDSLENLADGYKHMSLALNRTGRSIVYSCEWPLYMWPFQKPNYTEIRQ 190
Query: 132 --NAWRTTGDIRDKWESITSIADQNNVWGRF--------AGPGRWNDPDMLEVGNGGMSL 181
N WR DI D W+SI SI D W F AGPG WNDPDML +GN G+S
Sbjct: 191 YCNHWRNFADIDDSWKSIKSILD----WTSFNQERIVDVAGPGGWNDPDMLVIGNFGLSW 246
Query: 182 EEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRSKGA 241
+ + ++W +M +PL + D+R S + +L +K+VI +NQDPLG ++R
Sbjct: 247 NQQVTQMALWAIM-AAPLFMSNDLRHISPQAKALLQDKDVIAINQDPLGKQGYQLRQGDN 305
Query: 242 LE 243
E
Sbjct: 306 FE 307
>pdb|3LRK|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae
pdb|3LRL|A Chain A, Structure Of Alfa-Galactosidase (Mel1) From Saccharomyces
Cerevisiae With Melibiose
Length = 479
Score = 146 bits (369), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/247 (36%), Positives = 133/247 (53%), Gaps = 33/247 (13%)
Query: 21 GNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQW 80
G L A FP+G+ +AD++H G+YS AG TC+ PGSLG E +D FA
Sbjct: 83 GFLVADEQKFPNGMGHVADHLHNNSFLFGMYSSAGEYTCAG-YPGSLGREEEDAQFFANN 141
Query: 81 GIDYLKYDNCFHDGS--KPQ---ERYTKMSYALLKAGRPILYSI--WGTKIQR--NGLVR 131
+DYLKYDNC++ G P+ RY MS AL K GRP+ YS+ WG + +
Sbjct: 142 RVDYLKYDNCYNKGQFGTPEISYHRYKAMSDALNKTGRPVFYSLCNWGQDLTFYWGSGIA 201
Query: 132 NAWRTTGDIR--------------DKWE--------SITSIADQNNVWGRFAGPGRWNDP 169
N+WR +GD+ D+++ SI +I ++ G+ AG G WND
Sbjct: 202 NSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGVGGWNDL 261
Query: 170 DMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPL 229
D LEVG G ++ +E ++HFS+W ++K SPL+IG ++ + + I VI +NQD
Sbjct: 262 DNLEVGVGNLTDDEEKAHFSMWAMVK-SPLIIGANVNNLKASSYSIYSQASVIAINQDSN 320
Query: 230 GVPRRKI 236
G+P ++
Sbjct: 321 GIPATRV 327
>pdb|3LRM|A Chain A, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|B Chain B, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|C Chain C, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
pdb|3LRM|D Chain D, Structure Of Alfa-Galactosidase From Saccharomyces
Cerevisiae With Raffinose
Length = 479
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/247 (36%), Positives = 132/247 (53%), Gaps = 33/247 (13%)
Query: 21 GNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQW 80
G L A FP+G+ +AD++H G+YS AG TC+ PGSLG E +D FA
Sbjct: 83 GFLVADEQKFPNGMGHVADHLHNNSFLFGMYSSAGEYTCAG-YPGSLGREEEDAQFFANN 141
Query: 81 GIDYLKYDNCFHDGS--KPQ---ERYTKMSYALLKAGRPILYSI--WGTKIQR--NGLVR 131
+DYLKY NC++ G P+ RY MS AL K GRP+ YS+ WG + +
Sbjct: 142 RVDYLKYANCYNKGQFGTPEISYHRYKAMSDALNKTGRPVFYSLCNWGQDLTFYWGSGIA 201
Query: 132 NAWRTTGDIR--------------DKWE--------SITSIADQNNVWGRFAGPGRWNDP 169
N+WR +GD+ D+++ SI +I ++ G+ AG G WND
Sbjct: 202 NSWRMSGDVTAEFTRPDSRCPCDGDEYDCKYAGFHCSIMNILNKAAPMGQNAGVGGWNDL 261
Query: 170 DMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPL 229
D LEVG G ++ +E ++HFS+W ++K SPL+IG ++ + + I VI +NQD
Sbjct: 262 DNLEVGVGNLTDDEEKAHFSMWAMVK-SPLIIGANVNNLKASSYSIYSQASVIAINQDSN 320
Query: 230 GVPRRKI 236
G+P ++
Sbjct: 321 GIPATRV 327
>pdb|1SZN|A Chain A, The Structure Of Alpha-Galactosidase
pdb|1T0O|A Chain A, The Structure Of Alpha-Galactosidase From Trichoderma
Reesei Complexed With Beta-D-Galactose
Length = 417
Score = 140 bits (352), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/259 (36%), Positives = 121/259 (46%), Gaps = 59/259 (22%)
Query: 21 GNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQW 80
G++ + FP GI LA VHA GL+LGIYS AG TC+ P SLG+E D FA W
Sbjct: 66 GHIAPNATRFPDGIDGLAKKVHALGLKLGIYSTAGTATCAG-YPASLGYEDVDAADFADW 124
Query: 81 GIDYLKYDNC-----FHD----------------------------------GSKPQERY 101
G+DYLKYDNC + D SK ER+
Sbjct: 125 GVDYLKYDNCNVPSDWQDEYVACNPDFVKTGPNGTCTTALDPTLAPPGYDWSTSKSAERF 184
Query: 102 TKMSYALLKAGRPILYS--IWGTK--IQRNGLVRNAWRTTGDIRDKWESITSIADQN--- 154
M AL K I+ S IWG +WR + DI W S+T I + N
Sbjct: 185 GAMRNALAKQSHEIVLSMCIWGQADVFSWGNSTGISWRMSDDISPNWGSVTRILNLNSFK 244
Query: 155 ----NVWGRFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASG 210
+ WG ND DMLEVGNG ++ E R+HF++W MK SPLLIG D+ S
Sbjct: 245 LNSVDFWGH-------NDADMLEVGNGNLTAAETRTHFALWAAMK-SPLLIGTDLAQLSQ 296
Query: 211 ETLKILGNKEVIVVNQDPL 229
+ +L NK ++ NQD +
Sbjct: 297 NNINLLKNKHLLAFNQDSV 315
>pdb|3A21|A Chain A, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A21|B Chain B, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A22|A Chain A, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A22|B Chain B, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A23|A Chain A, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
pdb|3A23|B Chain B, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
Length = 614
Score = 127 bits (319), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 98/299 (32%), Positives = 140/299 (46%), Gaps = 53/299 (17%)
Query: 21 GNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMP---------GSLGHEL 71
GN+ T+ +P G+ A+ Y+H+KGL+ GIY+DAG C P GS GH
Sbjct: 66 GNITVDTAEWPGGMSAITAYIHSKGLKAGIYTDAGKDGCGYYYPTGRPAAPGSGSEGHYD 125
Query: 72 QDEGTFAQWGIDYLKYDNCFHD--GSKPQERYTKMSYALLKA----GRPILYSI--WGTK 123
QD F+ WG D++K D C D G Y +S A+ +A GRP+ SI WG +
Sbjct: 126 QDMLQFSTWGFDFVKVDWCGGDAEGLDAATTYKSISDAVGRAAATTGRPLTLSICNWGYQ 185
Query: 124 IQRNGLVRNA--WRTTGDI-----RDKWESITSIADQNNVWGRFAGPGRWNDPDMLEVGN 176
N A WRT+ DI + S+ S DQ + G +NDPDML VG
Sbjct: 186 NPWNWAAGQAPLWRTSTDIIYYGNQPSMTSLLSNFDQ-TLHPTAQHTGYYNDPDMLMVGM 244
Query: 177 GGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKI 236
G + + R+H ++W + +PLL G D+ + + ET IL N EVI V+QD G+ K+
Sbjct: 245 DGFTAAQNRTHMNLWAISG-APLLAGNDLTTMTSETAGILKNPEVIAVDQDSRGLQGVKV 303
Query: 237 --------------------------RSKGALEFPVTWREIGIPLPAPVIVRDLWRYEH 269
R+ A + V W ++G+ A VRDLW ++
Sbjct: 304 AEDTTGLQAYGKVLSGTGNRAVVLLNRTSAAHDITVRWSDLGL-TNASATVRDLWARQN 361
>pdb|3CC1|A Chain A, Crystal Structure Of A Putative
Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
Halodurans C-125 At 2.00 A Resolution
pdb|3CC1|B Chain B, Crystal Structure Of A Putative
Alpha-N-Acetylgalactosaminidase (Bh1870) From Bacillus
Halodurans C-125 At 2.00 A Resolution
Length = 433
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 106/272 (38%), Gaps = 71/272 (26%)
Query: 20 HGNLRAKTSTFPS-----GIKALADYVHAKGLRLGIYSDAGF------------------ 56
+G L T+ FPS G K L+D +H GL+ GI+ G
Sbjct: 77 YGRLLPATNRFPSAKNGAGFKPLSDAIHDLGLKFGIHIXRGIPRQAVYENSPVLGSTKTA 136
Query: 57 RTCSNTMP------GSLGHELQDEGT----------FAQWGIDYLKYDNC----FHDGSK 96
R ++T G + EG +AQWG+D++K D+ +D
Sbjct: 137 REIAHTNSICPWNTDXYGVDPTKEGAQSYYNSLFELYAQWGVDFVKVDDIAASRLYDTH- 195
Query: 97 PQERYTKMSYALLKAGRPILYSI--------WGTKIQRNGLVRNAWRTTGDIRDKWESIT 148
E + A+ GRP + S+ + + N N WR T D D W +
Sbjct: 196 -LEEIKXIQRAIQACGRPXVLSLSPGPAPIKYAHHFKTNA---NXWRITDDFWDDWSLLY 251
Query: 149 SIADQNNVWGRFAGPGRWNDPDMLEVGNGGM--------------SLEEYRSHFSIWPLM 194
++ VW + G G W D L +G+ G+ + +E + ++W +
Sbjct: 252 QXFERCEVWEKHIGTGHWPDCGXLPLGHIGIRSVDGPGGDRWTRFTKDEQLTXXNLWAIC 311
Query: 195 KVSPLLIGYDIRSASGETLKILGNKEVIVVNQ 226
SPL G ++R TL +L N+ ++ +NQ
Sbjct: 312 H-SPLXFGGELRDNDEWTLSLLTNEGILSINQ 342
>pdb|2XN2|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Galactose
Length = 732
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 21 GNLRAKTSTFPSGIKALADYVHAKGLRLGIY 51
G+ + FP+G+ ADYVH +GL+ G++
Sbjct: 385 GDWKVYKKKFPNGLGHFADYVHEQGLKFGLW 415
>pdb|2XN0|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN0|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN1|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|C Chain C, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|D Chain D, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
Length = 732
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 21 GNLRAKTSTFPSGIKALADYVHAKGLRLGIY 51
G+ + FP+G+ ADYVH +GL+ G++
Sbjct: 385 GDWKVYKKKFPNGLGHFADYVHEQGLKFGLW 415
>pdb|3F1E|X Chain X, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One
70s Ribosome. The Entire Crystal Structure Contains Two
70s Ribosomes As Described In Remark 400.
pdb|3F1G|X Chain X, Crystal Structure Of A Translation Termination Complex
Formed With Release Factor Rf2. This File Contains The
30s Subunit, Rf2, Two Trna, And Mrna Molecules Of The
Second 70s Ribosome. The Entire Crystal Structure
Contains Two 70s Ribosomes As Described In Remark 400
Length = 378
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 131 RNAWRTTGDIRDKWESITSIADQNNVWGRFAGPGRWNDPD 170
RNAW+ +G I D + T + + R P WNDP+
Sbjct: 20 RNAWKASGGIFDIPQKETRLKELER---RLEDPSLWNDPE 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,145,461
Number of Sequences: 62578
Number of extensions: 457243
Number of successful extensions: 1113
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1045
Number of HSP's gapped (non-prelim): 23
length of query: 297
length of database: 14,973,337
effective HSP length: 98
effective length of query: 199
effective length of database: 8,840,693
effective search space: 1759297907
effective search space used: 1759297907
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)