Query 044794
Match_columns 297
No_of_seqs 132 out of 1208
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:49:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044794.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044794hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02808 alpha-galactosidase 100.0 3.8E-95 8E-100 693.7 28.9 290 3-296 68-385 (386)
2 PLN02229 alpha-galactosidase 100.0 6.1E-95 1.3E-99 697.0 29.5 291 3-297 99-420 (427)
3 PLN02692 alpha-galactosidase 100.0 6.5E-95 1.4E-99 694.2 29.1 292 3-297 92-411 (412)
4 KOG2366 Alpha-D-galactosidase 100.0 1.3E-82 2.7E-87 592.1 17.5 273 20-297 96-412 (414)
5 PLN03231 putative alpha-galact 100.0 4.5E-76 9.8E-81 556.9 19.4 228 3-231 36-352 (357)
6 PLN02899 alpha-galactosidase 100.0 2.4E-72 5.2E-77 553.9 24.7 229 3-233 66-384 (633)
7 PF02065 Melibiase: Melibiase; 99.9 2E-21 4.3E-26 187.8 13.0 210 3-224 72-331 (394)
8 COG3345 GalA Alpha-galactosida 99.2 5.4E-11 1.2E-15 117.0 7.0 93 4-96 324-458 (687)
9 PLN02219 probable galactinol-- 99.1 1.8E-08 3.9E-13 103.1 22.5 202 4-215 233-521 (775)
10 cd06593 GH31_xylosidase_YicI Y 99.0 1.3E-08 2.8E-13 95.7 17.2 183 4-202 41-279 (308)
11 cd06592 GH31_glucosidase_KIAA1 99.0 1.6E-08 3.6E-13 95.0 15.0 183 3-202 46-287 (303)
12 PLN02711 Probable galactinol-- 98.9 5.7E-07 1.2E-11 92.3 22.4 180 27-214 300-548 (777)
13 PLN02355 probable galactinol-- 98.9 8.4E-07 1.8E-11 91.1 23.6 202 4-214 237-528 (758)
14 PF05691 Raffinose_syn: Raffin 98.8 4.1E-08 8.8E-13 101.0 14.1 190 28-225 284-544 (747)
15 PLN02684 Probable galactinol-- 98.8 1.6E-07 3.5E-12 96.1 16.0 204 4-216 236-521 (750)
16 cd06589 GH31 The enzymes of gl 98.7 8.8E-07 1.9E-11 81.7 15.6 172 4-203 41-243 (265)
17 PF01055 Glyco_hydro_31: Glyco 98.6 4.9E-07 1.1E-11 88.8 13.3 183 4-203 60-309 (441)
18 cd06598 GH31_transferase_CtsZ 98.6 1.5E-06 3.2E-11 82.3 15.3 187 4-204 41-290 (317)
19 cd06604 GH31_glucosidase_II_Ma 98.4 1E-05 2.2E-10 77.2 15.7 180 4-202 41-292 (339)
20 cd06595 GH31_xylosidase_XylS-l 98.4 6.3E-06 1.4E-10 77.1 12.9 138 4-152 42-223 (292)
21 cd06599 GH31_glycosidase_Aec37 98.4 1.6E-05 3.5E-10 75.3 15.6 142 4-153 46-250 (317)
22 cd06600 GH31_MGAM-like This fa 98.2 5.4E-05 1.2E-09 71.7 16.4 180 4-202 41-270 (317)
23 cd06591 GH31_xylosidase_XylS X 98.2 6.8E-05 1.5E-09 71.0 15.9 140 4-153 41-243 (319)
24 cd06601 GH31_lyase_GLase GLase 98.1 4.5E-05 9.7E-10 72.8 13.2 83 4-91 41-133 (332)
25 PRK10658 putative alpha-glucos 98.1 8.4E-05 1.8E-09 77.1 14.7 140 4-153 300-495 (665)
26 cd06594 GH31_glucosidase_YihQ 98.0 0.00025 5.4E-09 67.2 16.3 183 5-203 41-295 (317)
27 cd06602 GH31_MGAM_SI_GAA This 98.0 0.0002 4.2E-09 68.6 15.5 136 5-152 42-230 (339)
28 cd06603 GH31_GANC_GANAB_alpha 97.8 0.00099 2.1E-08 63.6 16.0 180 4-202 41-292 (339)
29 cd06597 GH31_transferase_CtsY 97.7 0.001 2.2E-08 63.8 15.2 118 28-153 82-263 (340)
30 COG1501 Alpha-glucosidases, fa 97.7 0.00044 9.6E-09 72.7 13.2 137 4-152 297-492 (772)
31 PRK10426 alpha-glucosidase; Pr 97.5 0.0026 5.7E-08 65.8 15.8 138 6-152 240-443 (635)
32 PLN02763 hydrolase, hydrolyzin 97.5 0.0018 3.9E-08 69.5 13.7 136 5-152 219-427 (978)
33 PLN02982 galactinol-raffinose 97.0 0.015 3.2E-07 60.8 13.8 141 66-214 467-632 (865)
34 PF10566 Glyco_hydro_97: Glyco 96.6 0.0085 1.8E-07 55.7 7.8 108 3-119 46-155 (273)
35 cd06596 GH31_CPE1046 CPE1046 i 96.5 0.032 6.9E-07 51.5 11.0 155 18-202 59-224 (261)
36 PF01120 Alpha_L_fucos: Alpha- 91.3 2.4 5.3E-05 40.6 11.1 85 34-119 140-243 (346)
37 KOG2366 Alpha-D-galactosidase 91.0 0.078 1.7E-06 51.2 0.4 141 77-237 37-191 (414)
38 smart00812 Alpha_L_fucos Alpha 81.8 6.9 0.00015 38.2 8.3 87 34-121 130-236 (384)
39 PLN02229 alpha-galactosidase 78.0 1.4 3E-05 43.6 2.1 85 3-118 50-148 (427)
40 PF01791 DeoC: DeoC/LacD famil 76.6 12 0.00026 33.6 7.7 83 34-119 114-200 (236)
41 PLN02692 alpha-galactosidase 75.7 2.5 5.3E-05 41.7 3.1 80 5-115 45-137 (412)
42 cd08577 PI-PLCc_GDPD_SF_unchar 73.5 8 0.00017 35.0 5.6 41 34-88 187-227 (228)
43 PF07302 AroM: AroM protein; 72.9 8.6 0.00019 34.8 5.6 47 65-119 162-209 (221)
44 PF03102 NeuB: NeuB family; I 72.0 11 0.00023 34.5 6.1 64 33-119 57-120 (241)
45 KOG1065 Maltase glucoamylase a 70.2 6.6 0.00014 41.7 4.8 72 17-89 337-446 (805)
46 PLN02808 alpha-galactosidase 69.0 4.4 9.5E-05 39.7 3.1 79 6-115 22-113 (386)
47 TIGR03569 NeuB_NnaB N-acetylne 67.4 12 0.00026 35.9 5.6 67 30-119 73-140 (329)
48 PLN02899 alpha-galactosidase 60.8 7.1 0.00015 40.4 2.9 36 257-295 596-631 (633)
49 TIGR03128 RuMP_HxlA 3-hexulose 60.7 51 0.0011 28.5 8.1 45 34-91 91-136 (206)
50 PRK12858 tagatose 1,6-diphosph 60.5 88 0.0019 30.1 10.2 49 69-117 185-246 (340)
51 PF02806 Alpha-amylase_C: Alph 57.0 43 0.00092 25.2 6.1 43 250-296 40-95 (95)
52 cd08555 PI-PLCc_GDPD_SF Cataly 55.7 30 0.00066 29.5 5.6 42 34-89 138-179 (179)
53 TIGR03586 PseI pseudaminic aci 55.4 30 0.00065 33.1 6.0 63 34-119 79-141 (327)
54 KOG3111 D-ribulose-5-phosphate 53.2 17 0.00037 32.4 3.6 56 33-88 100-171 (224)
55 PRK06852 aldolase; Validated 52.9 1.3E+02 0.0028 28.6 9.7 81 34-119 156-237 (304)
56 cd08564 GDPD_GsGDE_like Glycer 51.8 30 0.00065 31.5 5.3 45 35-90 213-257 (265)
57 PRK08227 autoinducer 2 aldolas 51.3 88 0.0019 29.1 8.2 71 34-119 129-199 (264)
58 COG1830 FbaB DhnA-type fructos 50.2 1.4E+02 0.0029 27.9 9.1 77 34-119 132-209 (265)
59 cd08607 GDPD_GDE5 Glycerophosp 49.4 40 0.00086 31.1 5.7 43 35-90 248-290 (290)
60 PF05913 DUF871: Bacterial pro 47.5 11 0.00023 36.6 1.7 51 33-93 48-101 (357)
61 cd01948 EAL EAL domain. This d 46.9 37 0.0008 29.4 4.9 44 34-91 134-177 (240)
62 cd08601 GDPD_SaGlpQ_like Glyce 46.4 48 0.001 29.9 5.7 41 35-90 208-248 (256)
63 cd08605 GDPD_GDE5_like_1_plant 46.2 36 0.00079 31.3 4.9 42 35-89 240-281 (282)
64 PF11790 Glyco_hydro_cc: Glyco 46.0 1.3E+02 0.0029 27.0 8.5 79 35-119 93-172 (239)
65 PRK13397 3-deoxy-7-phosphohept 44.5 56 0.0012 30.1 5.7 63 33-119 67-129 (250)
66 TIGR02104 pulA_typeI pullulana 44.2 1.2E+02 0.0025 31.4 8.7 87 33-122 230-352 (605)
67 TIGR03326 rubisco_III ribulose 42.9 59 0.0013 32.2 6.0 51 69-119 161-217 (412)
68 cd08148 RuBisCO_large Ribulose 42.3 50 0.0011 32.2 5.3 51 69-119 144-200 (366)
69 cd08205 RuBisCO_IV_RLP Ribulos 42.1 59 0.0013 31.6 5.8 50 70-119 148-203 (367)
70 cd08575 GDPD_GDE4_like Glycero 42.0 48 0.001 30.3 5.0 41 35-90 221-261 (264)
71 TIGR01361 DAHP_synth_Bsub phos 41.1 62 0.0013 29.8 5.6 63 33-119 77-139 (260)
72 COG0678 AHP1 Peroxiredoxin [Po 40.6 59 0.0013 27.9 4.8 51 33-87 25-78 (165)
73 cd08583 PI-PLCc_GDPD_SF_unchar 39.8 67 0.0015 28.6 5.5 42 35-91 195-236 (237)
74 cd06522 GH25_AtlA-like AtlA is 39.3 2E+02 0.0043 24.8 8.3 91 20-119 35-131 (192)
75 PF00016 RuBisCO_large: Ribulo 39.2 82 0.0018 30.0 6.1 51 69-119 31-87 (309)
76 cd08567 GDPD_SpGDE_like Glycer 39.0 56 0.0012 29.3 4.9 40 35-89 221-260 (263)
77 cd08207 RLP_NonPhot Ribulose b 39.0 60 0.0013 32.1 5.4 50 70-119 161-216 (406)
78 PRK09250 fructose-bisphosphate 38.7 2.5E+02 0.0055 27.2 9.4 57 34-92 181-241 (348)
79 cd08210 RLP_RrRLP Ribulose bis 38.6 79 0.0017 30.7 6.1 50 70-119 143-198 (364)
80 TIGR01691 enolase-ppase 2,3-di 38.5 35 0.00076 30.6 3.4 25 29-54 96-120 (220)
81 cd08579 GDPD_memb_like Glycero 38.2 65 0.0014 28.3 5.1 40 35-89 180-219 (220)
82 cd08209 RLP_DK-MTP-1-P-enolase 37.9 65 0.0014 31.7 5.4 51 69-119 141-197 (391)
83 cd08556 GDPD Glycerophosphodie 37.8 79 0.0017 26.4 5.4 40 35-89 150-189 (189)
84 cd08206 RuBisCO_large_I_II_III 37.7 66 0.0014 31.9 5.5 50 70-119 150-205 (414)
85 TIGR03332 salvage_mtnW 2,3-dik 37.5 64 0.0014 31.9 5.3 49 71-119 158-212 (407)
86 PF00563 EAL: EAL domain; Int 37.4 65 0.0014 27.8 5.0 69 36-118 138-209 (236)
87 PRK09454 ugpQ cytoplasmic glyc 36.9 72 0.0016 28.8 5.3 41 35-90 199-239 (249)
88 smart00052 EAL Putative diguan 36.6 75 0.0016 27.5 5.2 70 34-117 135-208 (241)
89 cd08213 RuBisCO_large_III Ribu 36.5 72 0.0016 31.6 5.5 52 68-119 147-204 (412)
90 PF10438 Cyc-maltodext_C: Cycl 35.7 74 0.0016 23.9 4.3 48 241-294 31-78 (78)
91 PRK06769 hypothetical protein; 34.9 56 0.0012 27.8 4.0 24 30-54 30-53 (173)
92 cd03465 URO-D_like The URO-D _ 34.9 1.5E+02 0.0033 27.5 7.3 61 31-117 208-268 (330)
93 cd08573 GDPD_GDE1 Glycerophosp 34.4 75 0.0016 28.9 5.0 39 35-89 218-257 (258)
94 cd08612 GDPD_GDE4 Glycerophosp 34.2 79 0.0017 29.5 5.2 40 35-89 251-290 (300)
95 cd06416 GH25_Lys1-like Lys-1 i 33.9 2.2E+02 0.0047 24.6 7.7 82 34-119 41-131 (196)
96 COG2200 Rtn c-di-GMP phosphodi 33.7 52 0.0011 29.9 3.8 46 34-93 138-183 (256)
97 cd08563 GDPD_TtGDE_like Glycer 33.4 83 0.0018 27.8 5.0 40 35-89 190-229 (230)
98 PRK13398 3-deoxy-7-phosphohept 33.0 1E+02 0.0022 28.6 5.6 18 102-119 124-141 (266)
99 cd08562 GDPD_EcUgpQ_like Glyce 32.2 93 0.002 27.2 5.1 40 35-89 189-228 (229)
100 PRK09549 mtnW 2,3-diketo-5-met 32.1 1E+02 0.0022 30.5 5.7 51 69-119 151-207 (407)
101 PRK13561 putative diguanylate 31.7 63 0.0014 33.2 4.5 49 33-92 535-583 (651)
102 cd08582 GDPD_like_2 Glyceropho 30.6 1E+02 0.0022 27.3 5.1 40 35-89 191-230 (233)
103 cd08581 GDPD_like_1 Glyceropho 30.3 87 0.0019 27.9 4.6 39 36-89 190-228 (229)
104 PRK09722 allulose-6-phosphate 30.2 1.2E+02 0.0027 27.4 5.5 36 22-57 85-120 (229)
105 PF01136 Peptidase_U32: Peptid 29.5 73 0.0016 28.2 4.0 38 73-110 161-198 (233)
106 PRK08942 D,D-heptose 1,7-bisph 29.5 87 0.0019 26.5 4.3 21 33-53 33-53 (181)
107 PRK08673 3-deoxy-7-phosphohept 29.4 1.3E+02 0.0029 28.9 5.9 63 33-119 145-207 (335)
108 PRK01076 L-rhamnose isomerase; 29.1 1.5E+02 0.0034 29.3 6.3 48 29-78 110-158 (419)
109 cd08604 GDPD_SHV3_repeat_2 Gly 29.1 1.6E+02 0.0035 27.5 6.4 53 35-90 240-294 (300)
110 cd06416 GH25_Lys1-like Lys-1 i 29.0 51 0.0011 28.6 2.8 22 34-55 112-133 (196)
111 cd08574 GDPD_GDE_2_3_6 Glycero 28.9 1E+02 0.0022 28.0 4.8 39 35-88 213-251 (252)
112 cd08572 GDPD_GDE5_like Glycero 28.8 1.2E+02 0.0027 28.1 5.5 42 35-89 251-292 (293)
113 PF08533 Glyco_hydro_42C: Beta 28.7 42 0.00091 23.3 1.8 26 260-293 32-57 (58)
114 PRK13209 L-xylulose 5-phosphat 28.6 2E+02 0.0044 26.0 6.9 65 43-116 5-74 (283)
115 cd08208 RLP_Photo Ribulose bis 28.5 1.1E+02 0.0023 30.5 5.2 51 69-119 177-233 (424)
116 cd08561 GDPD_cytoplasmic_ScUgp 28.2 1.1E+02 0.0025 27.3 5.1 40 35-89 202-241 (249)
117 TIGR01684 viral_ppase viral ph 28.1 77 0.0017 30.1 3.9 36 20-55 134-172 (301)
118 cd02871 GH18_chitinase_D-like 28.0 3.3E+02 0.0072 25.4 8.3 86 32-119 60-153 (312)
119 PF08924 DUF1906: Domain of un 27.9 47 0.001 27.5 2.3 18 34-51 118-135 (136)
120 KOG3340 Alpha-L-fucosidase [Ca 27.7 44 0.00096 32.3 2.3 23 34-56 152-174 (454)
121 cd02875 GH18_chitobiase Chitob 27.4 2.8E+02 0.006 26.6 7.8 82 35-119 67-156 (358)
122 COG0036 Rpe Pentose-5-phosphat 27.3 1.1E+02 0.0023 27.8 4.6 36 21-57 86-121 (220)
123 PRK04208 rbcL ribulose bisopho 27.2 1.4E+02 0.0031 30.1 5.9 51 69-119 177-233 (468)
124 cd08559 GDPD_periplasmic_GlpQ_ 27.1 1.1E+02 0.0024 28.4 4.9 49 35-89 246-295 (296)
125 cd08609 GDPD_GDE3 Glycerophosp 26.8 1.1E+02 0.0025 28.9 4.9 41 35-90 235-275 (315)
126 PRK12595 bifunctional 3-deoxy- 25.8 1.6E+02 0.0034 28.6 5.8 63 33-119 170-232 (360)
127 cd06414 GH25_LytC-like The Lyt 25.6 60 0.0013 28.1 2.6 22 34-55 115-136 (191)
128 cd08212 RuBisCO_large_I Ribulo 25.4 1.4E+02 0.003 30.0 5.4 51 69-119 162-218 (450)
129 COG0407 HemE Uroporphyrinogen- 25.3 88 0.0019 30.3 3.9 69 5-91 205-273 (352)
130 cd08580 GDPD_Rv2277c_like Glyc 25.3 1.5E+02 0.0032 27.4 5.3 40 35-89 219-259 (263)
131 cd08610 GDPD_GDE6 Glycerophosp 25.1 1.3E+02 0.0029 28.5 5.1 42 35-91 235-276 (316)
132 PRK08745 ribulose-phosphate 3- 25.1 1.5E+02 0.0032 26.8 5.1 24 34-57 99-122 (223)
133 cd08606 GDPD_YPL110cp_fungi Gl 24.8 1.4E+02 0.0031 27.3 5.2 43 35-90 235-277 (286)
134 PF06134 RhaA: L-rhamnose isom 24.5 1.6E+02 0.0035 29.0 5.4 72 31-120 111-184 (417)
135 COG0546 Gph Predicted phosphat 24.4 1.9E+02 0.0042 25.3 5.8 26 28-54 89-114 (220)
136 cd08602 GDPD_ScGlpQ1_like Glyc 24.4 1.8E+02 0.0038 27.4 5.7 53 34-89 255-308 (309)
137 COG3669 Alpha-L-fucosidase [Ca 24.0 68 0.0015 31.7 2.8 22 34-55 103-124 (430)
138 cd00599 GH25_muramidase Endo-N 23.9 56 0.0012 27.8 2.1 23 33-55 105-128 (186)
139 TIGR01668 YqeG_hyp_ppase HAD s 23.9 1.1E+02 0.0025 25.7 4.0 35 20-54 33-68 (170)
140 KOG2914 Predicted haloacid-hal 23.9 86 0.0019 28.3 3.3 30 25-55 89-118 (222)
141 cd00502 DHQase_I Type I 3-dehy 23.0 3.3E+02 0.0071 24.0 7.0 78 34-119 43-120 (225)
142 PF00834 Ribul_P_3_epim: Ribul 22.9 1E+02 0.0023 27.2 3.7 24 34-57 94-117 (201)
143 COG0296 GlgB 1,4-alpha-glucan 22.8 39 0.00084 35.3 1.0 72 20-92 201-307 (628)
144 cd06525 GH25_Lyc-like Lyc mura 22.7 69 0.0015 27.5 2.4 23 33-55 104-127 (184)
145 CHL00040 rbcL ribulose-1,5-bis 22.3 1.7E+02 0.0037 29.6 5.4 51 69-119 184-240 (475)
146 PRK10558 alpha-dehydro-beta-de 20.9 5.6E+02 0.012 23.4 8.2 70 26-114 2-71 (256)
147 KOG2672 Lipoate synthase [Coen 20.9 1.6E+02 0.0035 28.0 4.5 23 70-92 144-166 (360)
148 cd08608 GDPD_GDE2 Glycerophosp 20.7 2E+02 0.0042 27.9 5.3 41 35-90 213-253 (351)
149 PF00763 THF_DHG_CYH: Tetrahyd 20.5 1.4E+02 0.0031 23.8 3.7 52 34-90 16-67 (117)
150 KOG2386 mRNA capping enzyme, g 20.1 3.2E+02 0.0069 27.0 6.6 76 7-93 6-98 (393)
No 1
>PLN02808 alpha-galactosidase
Probab=100.00 E-value=3.8e-95 Score=693.70 Aligned_cols=290 Identities=62% Similarity=1.052 Sum_probs=276.2
Q ss_pred ccceeecCCCCCCCCCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCc
Q 044794 3 YTQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGI 82 (297)
Q Consensus 3 ~~~~~ld~G~~~~~~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGv 82 (297)
|.+|+|||||+...+..+|+|+||++|||+|||+|+||||+||||||||+++|+.||.+++|||++||++|+++||+|||
T Consensus 68 y~yv~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~GlkfGiy~~~G~~tC~~~~pGs~~~e~~DA~~fA~WGv 147 (386)
T PLN02808 68 YKYINLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKLGIYSDAGTLTCSKTMPGSLGHEEQDAKTFASWGI 147 (386)
T ss_pred CEEEEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCceEEEecCCccccCCCCCcchHHHHHHHHHHHHhCC
Confidence 77899999999877888999999999999999999999999999999999999999988779999999999999999999
Q ss_pred cEEEeeCCCCCCCChHHHHHHHHHHHHHcCCCeEEec--CCcc--hhhhcccccEEEecCCCCCChhhHHHHHHhccccc
Q 044794 83 DYLKYDNCFHDGSKPQERYTKMSYALLKAGRPILYSI--WGTK--IQRNGLVRNAWRTTGDIRDKWESITSIADQNNVWG 158 (297)
Q Consensus 83 DylK~D~c~~~~~~~~~~y~~m~~al~~~gr~i~~s~--wg~~--~~~~~~~~n~wRis~Di~~~W~~i~~~~~~~~~~~ 158 (297)
||||||+|+.++.+.+++|.+|++||+++||||+||+ ||.. +.|.+++||+||++.||++.|.++.++++.+..++
T Consensus 148 DylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpi~~slc~wg~~~p~~w~~~~~n~WR~s~Di~d~W~~v~~~~~~~~~~~ 227 (386)
T PLN02808 148 DYLKYDNCENTGTSPQERYPKMSKALLNSGRPIFFSLCEWGQEDPATWAGDIGNSWRTTGDIQDNWDSMTSRADQNDRWA 227 (386)
T ss_pred CEEeecCcCCCCccHHHHHHHHHHHHHHhCCCeEEEecCCCCCCHHHHHHhhcCcccccCCcccchhhHHHHHHhhhhhH
Confidence 9999999998777788999999999999999999996 9975 78999999999999999999999999999999999
Q ss_pred cccCCCcCCCCCccccCCCCCCHHHHHHHHHHhhhcccCceEeccCCCCCCHhHHhccCChhHHHhccCCCCCCcEEEee
Q 044794 159 RFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRS 238 (297)
Q Consensus 159 ~~~~pg~wnD~DmL~vG~~~lT~~E~rt~~slWa~~~~sPLlig~Dl~~~~~~~~~lL~N~eliainQd~lG~~~~~v~~ 238 (297)
.+++||+|||||||+||+++||.+|+|||||||||++ ||||||+||++|++++++||+||||||||||++|+|+++|..
T Consensus 228 ~~agPG~wnDpDML~vGn~glt~~E~rthfsLWam~~-SPLiiG~DL~~~~~~~l~iLtNkevIAINQD~lG~~~~~v~~ 306 (386)
T PLN02808 228 SYARPGGWNDPDMLEVGNGGMTTEEYRSHFSIWALAK-APLLIGCDIRSMDNETFELLSNKEVIAVNQDKLGVQGKKVKK 306 (386)
T ss_pred hhcCCCCCCCCCeeeECCCCCCHHHHHHHHHHHHHHh-CcceecCCcCcCCHHHHHHhcCHHHHhhcCCccccCcEEEEe
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999987
Q ss_pred CCCEEE------------------------EEEecccCCCCCCceEEEeccccCCceeeeeeceeEEEEECCCcEEEEEE
Q 044794 239 KGALEF------------------------PVTWREIGIPLPAPVIVRDLWRYEHSFVSMNKRYGLIAYVDPHACKMYIL 294 (297)
Q Consensus 239 ~~~~~V------------------------~i~~~~lGl~~~~~~~v~DlW~~~~~~~g~~~~~~~~~~l~~h~~~~~rl 294 (297)
+++.+| +++|++|||.....++||||| +|+++| .++++++++|+||+|+||||
T Consensus 307 ~~~~~vW~k~L~~g~~aVal~N~~~~~~~~~~~~~~lgl~~~~~~~vrDlW--s~~~~g-~~~~~~~~~v~pHg~~~~rl 383 (386)
T PLN02808 307 DGDLEVWAGPLSKKRVAVVLWNRGSSRATITARWSDIGLNSSAVVNARDLW--AHSTQS-SVKGQLSALVESHACKMYVL 383 (386)
T ss_pred cCCeEEEEEECCCCCEEEEEEECCCCCEEEEEEHHHhCCCCCCceEEEECC--CCCccC-cccceEEEEECCceEEEEEE
Confidence 665443 888999999876789999999 999998 88899999999999999999
Q ss_pred Ee
Q 044794 295 TP 296 (297)
Q Consensus 295 ~~ 296 (297)
+|
T Consensus 384 t~ 385 (386)
T PLN02808 384 TP 385 (386)
T ss_pred eC
Confidence 97
No 2
>PLN02229 alpha-galactosidase
Probab=100.00 E-value=6.1e-95 Score=697.01 Aligned_cols=291 Identities=56% Similarity=0.980 Sum_probs=274.0
Q ss_pred ccceeecCCCCCCCCCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCc
Q 044794 3 YTQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGI 82 (297)
Q Consensus 3 ~~~~~ld~G~~~~~~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGv 82 (297)
|.+|.|||||+...+..+|+++|||+|||+|||+|+||+|+||||||||+++|+.||+++ |||++||++|+++||+|||
T Consensus 99 y~yv~iDDgW~~~~rd~~G~l~~d~~rFP~G~k~ladyiH~~GlKfGIy~d~G~~TC~~~-pGS~g~e~~DA~~fA~WGV 177 (427)
T PLN02229 99 YIHVNIDDCWSNLKRDSKGQLVPDPKTFPSGIKLLADYVHSKGLKLGIYSDAGVFTCQVR-PGSLFHEVDDADIFASWGV 177 (427)
T ss_pred CEEEEEcCCcCCCCcCCCCCEEEChhhcCCcHHHHHHHHHHCCCceEEeccCCCcccCCC-CCCccHHHHHHHHHHHcCC
Confidence 678999999997777789999999999999999999999999999999999999999998 9999999999999999999
Q ss_pred cEEEeeCCCCCCCChHHHHHHHHHHHHHcCCCeEEec--CCcc--hhhhcccccEEEecCCCCCChhhHHHHHHhccccc
Q 044794 83 DYLKYDNCFHDGSKPQERYTKMSYALLKAGRPILYSI--WGTK--IQRNGLVRNAWRTTGDIRDKWESITSIADQNNVWG 158 (297)
Q Consensus 83 DylK~D~c~~~~~~~~~~y~~m~~al~~~gr~i~~s~--wg~~--~~~~~~~~n~wRis~Di~~~W~~i~~~~~~~~~~~ 158 (297)
||||||+|+..+...+++|..|++||+++||||+||+ ||.. +.|..++||+||+++||++.|+++.++++.+..|+
T Consensus 178 DylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC~WG~~~p~~w~~~~~n~WR~s~DI~d~W~sv~~i~~~~~~~~ 257 (427)
T PLN02229 178 DYLKYDNCYNLGIKPIERYPPMRDALNATGRSIFYSLCEWGVDDPALWAGKVGNSWRTTDDINDTWASMTTIADLNNKWA 257 (427)
T ss_pred CEEEecCCCCCCcchhHHHHHHHHHHHhhCCCcEEEecCCCCCCHHHHHHhhcCeeeccCCcccccccHHHHHHHHHHHH
Confidence 9999999998777789999999999999999999996 9986 77989999999999999999999999999999999
Q ss_pred cccCCCcCCCCCccccCCCCCCHHHHHHHHHHhhhcccCceEeccCCCCCCHhHHhccCChhHHHhccCCCCCCcEEEee
Q 044794 159 RFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRS 238 (297)
Q Consensus 159 ~~~~pg~wnD~DmL~vG~~~lT~~E~rt~~slWa~~~~sPLlig~Dl~~~~~~~~~lL~N~eliainQd~lG~~~~~v~~ 238 (297)
++++||||||||||+||+++||.+|+|||||||||++ ||||||+||+++++++++|||||||||||||++|+|+++|..
T Consensus 258 ~~agPG~wnDpDML~vGn~glT~~E~rthfsLWai~~-SPLiiG~DL~~m~~~tl~ILtNkEVIAINQD~lG~qg~~v~~ 336 (427)
T PLN02229 258 AYAGPGGWNDPDMLEVGNGGMTYEEYRGHFSIWALMK-APLLIGCDVRNMTAETMEILSNKEVIAVNQDPLGVQGRKIQA 336 (427)
T ss_pred hhcCCCCCCCCCeeeeCCCCCCHHHHHHHHHHHHHHh-CceeecCCcccCCHHHHHHhcCHHHHhhcccccccCcEEEEe
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999986
Q ss_pred CC---CEE------------------------EEEEecccCCCCCCceEEEeccccCCceeeeeeceeEEEEECCCcEEE
Q 044794 239 KG---ALE------------------------FPVTWREIGIPLPAPVIVRDLWRYEHSFVSMNKRYGLIAYVDPHACKM 291 (297)
Q Consensus 239 ~~---~~~------------------------V~i~~~~lGl~~~~~~~v~DlW~~~~~~~g~~~~~~~~~~l~~h~~~~ 291 (297)
.+ +.+ |+++|++|||..+..++||||| +|+++|..++++|+++|+||+|++
T Consensus 337 ~~~~~~~~vW~~~L~~g~~aValfN~~~~~~~v~v~~~~lGl~~~~~~~VrDLW--~~~dlg~~~~~~~~~~v~~Hg~~l 414 (427)
T PLN02229 337 NGKNGCQQVWAGPLSGDRLVVALWNRCSEPATITASWDVIGLESSISVSVRDLW--KHKDLSENVVGSFGAQVDAHDCHM 414 (427)
T ss_pred cCCCCceEEEEEECCCCCEEEEEEeCCCCCEEEEEEHHHcCCCCCCceEEEECC--CCCccCccccceEEEEECCCeEEE
Confidence 42 122 3888999999876679999999 999997456789999999999999
Q ss_pred EEEEeC
Q 044794 292 YILTPI 297 (297)
Q Consensus 292 ~rl~~~ 297 (297)
|||+|.
T Consensus 415 ~rl~~~ 420 (427)
T PLN02229 415 YIFTPQ 420 (427)
T ss_pred EEEecc
Confidence 999973
No 3
>PLN02692 alpha-galactosidase
Probab=100.00 E-value=6.5e-95 Score=694.16 Aligned_cols=292 Identities=60% Similarity=1.015 Sum_probs=275.5
Q ss_pred ccceeecCCCCCCCCCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCc
Q 044794 3 YTQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGI 82 (297)
Q Consensus 3 ~~~~~ld~G~~~~~~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGv 82 (297)
|.+|+|||||+...+..+|+++|||+|||+|||+|+||||+||||||||+++|+.||.++.|||++||++|+++||+|||
T Consensus 92 y~yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKfGIy~d~G~~tC~~~~pGS~g~e~~DA~~fA~WGv 171 (412)
T PLN02692 92 YTYVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKLGIYSDAGYFTCSKTMPGSLGHEEQDAKTFASWGI 171 (412)
T ss_pred cEEEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCceEEEecCCccccCCCCCCchHHHHHHHHHHHhcCC
Confidence 67899999999887888999999999999999999999999999999999999999987679999999999999999999
Q ss_pred cEEEeeCCCCCCCChHHHHHHHHHHHHHcCCCeEEec--CCcc--hhhhcccccEEEecCCCCCChhhHHHHHHhccccc
Q 044794 83 DYLKYDNCFHDGSKPQERYTKMSYALLKAGRPILYSI--WGTK--IQRNGLVRNAWRTTGDIRDKWESITSIADQNNVWG 158 (297)
Q Consensus 83 DylK~D~c~~~~~~~~~~y~~m~~al~~~gr~i~~s~--wg~~--~~~~~~~~n~wRis~Di~~~W~~i~~~~~~~~~~~ 158 (297)
||||||+|+.++....++|.+|++||+++||||+||+ ||.. +.|.+++||+||++.||++.|.++.++++.+..++
T Consensus 172 DylK~D~C~~~~~~~~~~y~~m~~AL~~tGRpI~~SlC~wg~~~p~~w~~~~~n~WR~s~DI~d~W~sv~~~~~~~~~~~ 251 (412)
T PLN02692 172 DYLKYDNCNNDGSKPTVRYPVMTRALMKAGRPIFFSLCEWGDMHPALWGSKVGNSWRTTNDISDTWDSMISRADMNEVYA 251 (412)
T ss_pred CEEeccccCCCCcchhHHHHHHHHHHHHhCCCeEEEecCCCcCChhhhhhhcCCccccccccccchHhHHHHHHHHHHHh
Confidence 9999999998777778999999999999999999997 8876 77989999999999999999999999999999999
Q ss_pred cccCCCcCCCCCccccCCCCCCHHHHHHHHHHhhhcccCceEeccCCCCCCHhHHhccCChhHHHhccCCCCCCcEEEee
Q 044794 159 RFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRS 238 (297)
Q Consensus 159 ~~~~pg~wnD~DmL~vG~~~lT~~E~rt~~slWa~~~~sPLlig~Dl~~~~~~~~~lL~N~eliainQd~lG~~~~~v~~ 238 (297)
.+++||+|||||||+||+++||.+|+|||||||||++ ||||||+||+++++++++||+||||||||||++|+|+++|..
T Consensus 252 ~~agPG~wnDpDML~VGn~glT~~E~rThfsLWai~~-SPLiiG~DL~~~~~~~l~iLtN~evIAiNQD~lG~q~~~v~~ 330 (412)
T PLN02692 252 ELARPGGWNDPDMLEVGNGGMTKDEYIVHFSIWAISK-APLLLGCDVRNMTKETMDIVANKEVIAVNQDPLGVQAKKVRM 330 (412)
T ss_pred hccCCCCCCCCCeEeECCCCCCHHHHHHHHHHHHHHh-CcceecCCcccCCHHHHHHhcCHHHhhhccCccccCcEEEEe
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999987
Q ss_pred CCCEEE------------------------EEEecccCCCCCCceEEEeccccCCceeeeeeceeEEEEECCCcEEEEEE
Q 044794 239 KGALEF------------------------PVTWREIGIPLPAPVIVRDLWRYEHSFVSMNKRYGLIAYVDPHACKMYIL 294 (297)
Q Consensus 239 ~~~~~V------------------------~i~~~~lGl~~~~~~~v~DlW~~~~~~~g~~~~~~~~~~l~~h~~~~~rl 294 (297)
.++.+| +++|++||+..+..++||||| +|+++|..++++|+++|+||+|++|||
T Consensus 331 ~~~~~vW~k~l~~g~~aVal~N~~~~~~~i~~~~~~lgl~~~~~~~vrDLW--~~~~~g~~~~~~~~~~v~~Hg~~l~rl 408 (412)
T PLN02692 331 EGDLEIWAGPLSGYRVALLLLNRGPWRNSITANWDDIGIPANSIVEARDLW--EHKTLKQHFVGNLTATVDSHACKMYIL 408 (412)
T ss_pred cCCeEEEEEECCCCCEEEEEEECCCCCEEEEEeHHHhCCCCCCceEEEECC--CCCccCccccceEEEEECCceEEEEEE
Confidence 655443 778889999876679999999 999998456789999999999999999
Q ss_pred EeC
Q 044794 295 TPI 297 (297)
Q Consensus 295 ~~~ 297 (297)
+|.
T Consensus 409 ~~~ 411 (412)
T PLN02692 409 KPI 411 (412)
T ss_pred ecC
Confidence 974
No 4
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.3e-82 Score=592.07 Aligned_cols=273 Identities=51% Similarity=0.890 Sum_probs=255.2
Q ss_pred CCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCCCCCCChHH
Q 044794 20 HGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQE 99 (297)
Q Consensus 20 ~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~~~~~~ 99 (297)
+|||+|||+|||+||++|+||+|++|||||||++.|..||.++ |||++||+.||++||+|||||+|+|.|+.......+
T Consensus 96 ~grLva~~~rFP~Gi~~ladyvHs~GLKlGiYsD~G~~TC~g~-PGS~~~e~~DA~tFA~WgvDylKlD~C~~~~~~~~~ 174 (414)
T KOG2366|consen 96 DGRLVADPSRFPSGIKALADYVHSKGLKLGIYSDAGNFTCAGY-PGSLGHEESDAKTFADWGVDYLKLDGCFNNLITMPE 174 (414)
T ss_pred ccccccChhhcccchhhhhhchhhcCCceeeeeccCchhhccC-CcccchhhhhhhhhHhhCCcEEeccccccccccccc
Confidence 8999999999999999999999999999999999999999888 999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHHcCCCeEEe-c-CCcc--hhh-------hcccccEEEecCCCCCChhhHHHHHH----hccccccccCCC
Q 044794 100 RYTKMSYALLKAGRPILYS-I-WGTK--IQR-------NGLVRNAWRTTGDIRDKWESITSIAD----QNNVWGRFAGPG 164 (297)
Q Consensus 100 ~y~~m~~al~~~gr~i~~s-~-wg~~--~~~-------~~~~~n~wRis~Di~~~W~~i~~~~~----~~~~~~~~~~pg 164 (297)
+|..|++||+++||||+|| | |+.. +.| .+++||+||+..||.++|.+|.+|++ ++..+++++|||
T Consensus 175 ~Yp~ms~aLN~tGrpi~ySlC~W~~~~~~~~~~pny~~i~~~~N~WR~~dDI~dtW~Sv~~I~d~~~~nqd~~~~~agPg 254 (414)
T KOG2366|consen 175 GYPIMSRALNNTGRPIFYSLCSWPAYHPGLPHHPNYKNISTICNSWRTTDDIQDTWKSVDSIIDYICWNQDRIAPLAGPG 254 (414)
T ss_pred cchhHHHHHhccCCceEEEeccCcccccCccCCCcchhhhhhhccccchhhhhhHHHHHHHHHHHHhhhhhhhccccCCC
Confidence 9999999999999999999 5 9886 445 57899999999999999999999999 788999999999
Q ss_pred cCCCCCccccCCCCCCHHHHHHHHHHhhhcccCceEeccCCCCCCHhHHhccCChhHHHhccCCCCCCcEEEeeCCC-EE
Q 044794 165 RWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVPRRKIRSKGA-LE 243 (297)
Q Consensus 165 ~wnD~DmL~vG~~~lT~~E~rt~~slWa~~~~sPLlig~Dl~~~~~~~~~lL~N~eliainQd~lG~~~~~v~~~~~-~~ 243 (297)
+|||||||++||.|||.+|+++||++||+++ +||++|+|++.++++.++||+|||+|||||||+|+|+++++.+++ +|
T Consensus 255 ~WNDpDmL~iGN~G~s~e~y~~qf~lWai~k-APLlms~Dlr~is~~~~~il~nk~~IaiNQDplgiqGr~i~~e~~~ie 333 (414)
T KOG2366|consen 255 GWNDPDMLEIGNGGMSYEEYKGQFALWAILK-APLLMSNDLRLISKQTKEILQNKEVIAINQDPLGIQGRKIVLEGDSIE 333 (414)
T ss_pred CCCChhHhhcCCCCccHHHHHHHHHHHHHhh-chhhhccchhhcCHHHHHHhcChhheeccCCccchhheeeeecCCceE
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999994433 55
Q ss_pred E--------------------------E-EEecccCCCCCCceEEEeccccCC-ceeeeeeceeEEEEECCCcEEEEEEE
Q 044794 244 F--------------------------P-VTWREIGIPLPAPVIVRDLWRYEH-SFVSMNKRYGLIAYVDPHACKMYILT 295 (297)
Q Consensus 244 V--------------------------~-i~~~~lGl~~~~~~~v~DlW~~~~-~~~g~~~~~~~~~~l~~h~~~~~rl~ 295 (297)
| + +.|.++|+..+..++++||| ++ .+++ ..+++++++|+|||+++|+++
T Consensus 334 vw~~pls~~~~Ava~lNr~~~~~~~~It~~~l~~~g~~~~~~~~~~dLw--~~~~~~~-~~~~~i~~~V~phG~~l~~l~ 410 (414)
T KOG2366|consen 334 VWSGPLSGKSVAVAFLNRRKTGIPARITAASLRELGLTNPASYTAHDLW--SGVLGFL-PTKDSISAQVNPHGVVLFVLH 410 (414)
T ss_pred EEeeccCCceEEEEEecccCCCCCccccHHHHhhcCCCCCceeEeeehh--hcccccc-ccCCeEEEEECCCCcEEEEEE
Confidence 4 4 66889999878899999999 88 4444 667899999999999999998
Q ss_pred eC
Q 044794 296 PI 297 (297)
Q Consensus 296 ~~ 297 (297)
+.
T Consensus 411 ~~ 412 (414)
T KOG2366|consen 411 PS 412 (414)
T ss_pred ec
Confidence 73
No 5
>PLN03231 putative alpha-galactosidase; Provisional
Probab=100.00 E-value=4.5e-76 Score=556.95 Aligned_cols=228 Identities=31% Similarity=0.490 Sum_probs=202.7
Q ss_pred ccceeecCCCCCCC----------------CCCCCCeeecCCCCCC-----ChHHHHHHHHHCCCeeeEEecCCCccCC-
Q 044794 3 YTQFLLANGLARTP----------------PMGHGNLRAKTSTFPS-----GIKALADYVHAKGLRLGIYSDAGFRTCS- 60 (297)
Q Consensus 3 ~~~~~ld~G~~~~~----------------~~g~G~l~~d~~rFP~-----Glk~lad~ih~~Glk~GiY~~~g~~~C~- 60 (297)
|.++.||++|+... ...+|+|+|||+|||+ |||+||||||+||||||||+++|+.||+
T Consensus 36 Y~Yv~iDd~W~~~~~~g~~~~~~~~~~~~~~d~~G~l~pd~~rFPs~~~~~G~k~lADyvHs~GLKfGIY~~~G~~tca~ 115 (357)
T PLN03231 36 YEYVVIDYLWYRKLKHGWFKTSAKSPGYDLIDKWGRPLPDPKRWPSTTGGKGFAPIAAKVHALGLKLGIHVMRGISTTAV 115 (357)
T ss_pred CEEEEECCcccccccccccccccccccccccCCCCCcccCcccCCCCccccCcHHHHHHHHhCCcceEEEecCCccchhc
Confidence 67899999998531 3568999999999999 9999999999999999999999999997
Q ss_pred -------CC---------------------------------CCCcchhHHhHHHHHHhhCccEEEeeCCCCCCCChHHH
Q 044794 61 -------NT---------------------------------MPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQER 100 (297)
Q Consensus 61 -------~~---------------------------------~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~~~~~~~ 100 (297)
++ +||+++|+++++++||+|||||||||+|+.......++
T Consensus 116 ~~~~pi~G~~Gs~g~~~~a~Dia~~~~~c~~~~~~~~~v~~~~~gaq~y~~~~a~~fA~WGVDylK~D~c~~~~~~~~~~ 195 (357)
T PLN03231 116 KKKTPILGAFKSNGHAWNAKDIALMDQACPWMQQCFVGVNTSSEGGKLFIQSLYDQYASWGIDFIKHDCVFGAENPQLDE 195 (357)
T ss_pred ccCCccCCCCcccccccchhhhccccccccccccccccccccchhHHHHHHHHHHHHHHhCCCEEeecccCCCCcccHHH
Confidence 33 24455677899999999999999999998766667789
Q ss_pred HHHHHHHHHHcCCCeEEec-CCcc--hhh---hcccccEEEecCCCCCChhhHHHHHHhccccc--------cccCCCcC
Q 044794 101 YTKMSYALLKAGRPILYSI-WGTK--IQR---NGLVRNAWRTTGDIRDKWESITSIADQNNVWG--------RFAGPGRW 166 (297)
Q Consensus 101 y~~m~~al~~~gr~i~~s~-wg~~--~~~---~~~~~n~wRis~Di~~~W~~i~~~~~~~~~~~--------~~~~pg~w 166 (297)
|.+|++||+++||||+||| +|.. +.| .+++||||||++||+++|+++.++++.+..++ .+++||+|
T Consensus 196 y~~m~~AL~~tGRpIv~Slc~g~~~~~~~~~~i~~~an~WR~s~DI~d~W~~v~~~~~~~~~~~~~~~~~~~~~agpG~W 275 (357)
T PLN03231 196 ILTVSKAIRNSGRPMIYSLSPGDGATPGLAARVAQLVNMYRVTGDDWDDWKYLVKHFDVARDFAAAGLIAIPSVVGGKSW 275 (357)
T ss_pred HHHHHHHHHHhCCCeEEEecCCCCCCchhhhhhhhhcCcccccCCcccchhhHHHHHHHHHHHhhhcccccccCCCCCCC
Confidence 9999999999999999999 6543 444 45779999999999999999999998765443 36799999
Q ss_pred CCCCccccC-------------CCCCCHHHHHHHHHHhhhcccCceEeccCCCCCCHhHHhccCChhHHHhccCCCCC
Q 044794 167 NDPDMLEVG-------------NGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGV 231 (297)
Q Consensus 167 nD~DmL~vG-------------~~~lT~~E~rt~~slWa~~~~sPLlig~Dl~~~~~~~~~lL~N~eliainQd~lG~ 231 (297)
||||||+|| +.+||.+|+|||||||||++ ||||+|+||++|++++++|||||||||||||++|.
T Consensus 276 nD~DML~vG~~g~~~~~~g~~~~~glT~~E~rthfslWam~~-SPLiiG~DL~~~~~~tl~iLtN~evIAINQD~lG~ 352 (357)
T PLN03231 276 VDLDMLPFGRLTDPAAAYGPYRNSRLSLEEKKTQMTLWAVAK-SPLMFGGDLRRLDNETLSLLTNPTVLEVNSHSTGN 352 (357)
T ss_pred CCccchhcCCCCCCcccccccccCCCCHHHHHHHHHHHHHHh-CchhhcCCcccCCHHHHHHhcChHHheecCCcccc
Confidence 999999999 35799999999999999999 99999999999999999999999999999999995
No 6
>PLN02899 alpha-galactosidase
Probab=100.00 E-value=2.4e-72 Score=553.86 Aligned_cols=229 Identities=27% Similarity=0.430 Sum_probs=197.8
Q ss_pred ccceeecCCCCCCC-------------CCCCCCeeecCCCCCC-----ChHHHHHHHHHCCCeeeEEecCCCccCC----
Q 044794 3 YTQFLLANGLARTP-------------PMGHGNLRAKTSTFPS-----GIKALADYVHAKGLRLGIYSDAGFRTCS---- 60 (297)
Q Consensus 3 ~~~~~ld~G~~~~~-------------~~g~G~l~~d~~rFP~-----Glk~lad~ih~~Glk~GiY~~~g~~~C~---- 60 (297)
|.++.|||||+... .+.+|+|+|||+|||+ |||+||||||+||||||||+++|+.+|+
T Consensus 66 Y~YVnIDDcW~~~~~~g~~~~s~g~~~~D~~GrLvPDp~RFPSs~~g~GmK~LADYVHskGLKFGIY~~~Gi~tcA~~~~ 145 (633)
T PLN02899 66 YEYVVVDYLWYRKKVEGAYVDSLGFDVIDEWGRPIPDPGRWPSSRGGKGFTEVAEKVHAMGLKFGIHVMRGISTQAVNAN 145 (633)
T ss_pred CeEEEEccccccccccccccccccccccCCCCCCccCcccCCCCccCCCcHHHHHHHHhCCcceEEEecCCCcccccccC
Confidence 77899999998642 3568999999999998 9999999999999999999999976653
Q ss_pred --------------------------------C----------CCCCcchhHHhHHHHHHhhCccEEEeeCCCCCCCChH
Q 044794 61 --------------------------------N----------TMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQ 98 (297)
Q Consensus 61 --------------------------------~----------~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~~~~~ 98 (297)
+ .++|.++|+++++++||+|||||||+|+|+.+. ...
T Consensus 146 ~PI~gs~~g~~y~~s~~~~~a~DIa~~~~tC~w~~~g~~~vDa~~~~g~a~~~Sla~tfAsWGVDyLKyD~c~~~~-~~~ 224 (633)
T PLN02899 146 TPILDAVKGGAYEESGRQWRAKDIALKERACAWMSHGFMSVNTKLGAGKAFLRSLYDQYAEWGVDFVKHDCVFGDD-FDL 224 (633)
T ss_pred CccccccccccccccccccchhhccccccccccCCCCcccccccccchhhhhHHHHHHHHHhCCCEEEEcCCCCCC-CCh
Confidence 1 124557788888999999999999999998643 345
Q ss_pred HHHHHHHHHHHHcCCCeEEec-CCcc--hhhh---cccccEEEecCCCCCChhhHHHHHHhcccccccc-------CCCc
Q 044794 99 ERYTKMSYALLKAGRPILYSI-WGTK--IQRN---GLVRNAWRTTGDIRDKWESITSIADQNNVWGRFA-------GPGR 165 (297)
Q Consensus 99 ~~y~~m~~al~~~gr~i~~s~-wg~~--~~~~---~~~~n~wRis~Di~~~W~~i~~~~~~~~~~~~~~-------~pg~ 165 (297)
++|.+|++||+++||||+||+ +|.. +.|+ .+++|||||++||++.|.+|..+++.+..|+.++ +||+
T Consensus 225 ~ey~~ms~AL~aTGRPIvySLspG~~~~p~wa~~v~~~aNmWRitgDI~D~W~sV~~~~d~~~~~~~~~~~g~~G~~gg~ 304 (633)
T PLN02899 225 EEITYVSEVLKELDRPIVYSLSPGTSATPTMAKEVSGLVNMYRITGDDWDTWGDVAAHFDVSRDFAAAGLIGAKGLRGRS 304 (633)
T ss_pred HHHHHHHHHHHHhCCCeEEEecCCcccchhhhhhhhccCccceecCCcccchHHHHHHHHHHHHHhhccccccCCCCCCC
Confidence 789999999999999999999 6654 4554 5679999999999999999999998766665432 3468
Q ss_pred CCCCCccccCC-------------CCCCHHHHHHHHHHhhhcccCceEeccCCCCCCHhHHhccCChhHHHhccCCCCCC
Q 044794 166 WNDPDMLEVGN-------------GGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVIVVNQDPLGVP 232 (297)
Q Consensus 166 wnD~DmL~vG~-------------~~lT~~E~rt~~slWa~~~~sPLlig~Dl~~~~~~~~~lL~N~eliainQd~lG~~ 232 (297)
|||||||+||. .+||.+|+|||||||||++ ||||+|+||++|++++++|||||||||||||+++.+
T Consensus 305 WNDpDML~VG~lg~~~~n~G~~r~~~LT~dE~rThfSLWAm~a-SPLiiG~DLr~md~~tl~ILTNkeVIAINQds~~n~ 383 (633)
T PLN02899 305 WPDLDMLPLGWLTDPGSNVGPHRACNLTLDEQKTQMTLWAMAK-SPLMYGGDLRKLDQATYSLITNPTLLEINSHSSNNM 383 (633)
T ss_pred CCCcceecccCCCccccccCccccCCCCHHHHHHHHHHHHHHh-CchhhcCCcccCCHHHHHHhcCHHHeEEccCccCCe
Confidence 99999999993 2599999999999999999 999999999999999999999999999999988754
Q ss_pred c
Q 044794 233 R 233 (297)
Q Consensus 233 ~ 233 (297)
.
T Consensus 384 ~ 384 (633)
T PLN02899 384 E 384 (633)
T ss_pred e
Confidence 3
No 7
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=99.86 E-value=2e-21 Score=187.82 Aligned_cols=210 Identities=21% Similarity=0.320 Sum_probs=126.2
Q ss_pred ccceeecCCCCCCCC---CCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCC-----ccCC--------------
Q 044794 3 YTQFLLANGLARTPP---MGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGF-----RTCS-------------- 60 (297)
Q Consensus 3 ~~~~~ld~G~~~~~~---~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~-----~~C~-------------- 60 (297)
+..|+|||||+..+. .+.|.+++|++|||+||++|+++||++|||||||..|.. ..+.
T Consensus 72 ~e~fviDDGW~~~r~~d~~~~GdW~~~~~kFP~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~ 151 (394)
T PF02065_consen 72 YEYFVIDDGWFGGRDDDNAGLGDWEPDPKKFPNGLKPLADYIHSLGMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPP 151 (394)
T ss_dssp -SEEEE-SSSBCTESTTTSTTSBECBBTTTSTTHHHHHHHHHHHTT-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-
T ss_pred CEEEEEcCccccccCCCcccCCceeEChhhhCCcHHHHHHHHHHCCCeEEEEeccccccchhHHHHhCccceeecCCCCC
Confidence 467999999997643 346999999999999999999999999999999998862 1111
Q ss_pred ---C-------CCCCcchhHHhHH-HHHHhhCccEEEeeCCCCCC----C---ChHHHHH----HHHHHHHHcCCCeEEe
Q 044794 61 ---N-------TMPGSLGHELQDE-GTFAQWGIDYLKYDNCFHDG----S---KPQERYT----KMSYALLKAGRPILYS 118 (297)
Q Consensus 61 ---~-------~~pGs~~~~~~d~-~~fa~WGvDylK~D~c~~~~----~---~~~~~y~----~m~~al~~~gr~i~~s 118 (297)
. ++|++++|....+ +.+++|||||||+|++..-. . +...+|. ++.++|.+...++++.
T Consensus 152 ~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~P~v~iE 231 (394)
T PF02065_consen 152 TLGRNQYVLDLSNPEVRDYLFEVIDRLLREWGIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARFPDVLIE 231 (394)
T ss_dssp ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHTTTSEEE
T ss_pred cCcccceEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence 0 3588889966644 56899999999999986521 1 1233444 4788888888888874
Q ss_pred -c-CCcc---hhhhcccccEEEecCCCCCChhhHHHHHHhccccccccCCCcC-CCCCccccCCCCCCHHHHHHHHHHhh
Q 044794 119 -I-WGTK---IQRNGLVRNAWRTTGDIRDKWESITSIADQNNVWGRFAGPGRW-NDPDMLEVGNGGMSLEEYRSHFSIWP 192 (297)
Q Consensus 119 -~-wg~~---~~~~~~~~n~wRis~Di~~~W~~i~~~~~~~~~~~~~~~pg~w-nD~DmL~vG~~~lT~~E~rt~~slWa 192 (297)
| +|-. +... .+.+.--+|++ .+.++++.-+......+... --|.| -+...-..|. .+.-+.|.++++|
T Consensus 232 ~CssGG~R~D~g~l-~~~~~~w~SD~-tda~~R~~iq~g~s~~~p~~-~~~~hv~~~p~~~~~r--~~~l~~r~~~a~~- 305 (394)
T PF02065_consen 232 NCSSGGGRFDPGML-YYTPQSWTSDN-TDALERLRIQYGTSLFYPPE-YMGAHVSASPNHQTGR--TTPLEFRAHVAMF- 305 (394)
T ss_dssp E-BTTBTTTSHHHH-CCSSEEESBST--SHHHHHHHHHHHCTTSSGG-GEEEEEEHSS-TTTHH--HGGHHHHHHHHTC-
T ss_pred eccCCCCccccchh-eeccccccCCc-cchHHHhhhhcccccccCHH-HhCCeEEeccccccCC--cccceechhhhhc-
Confidence 4 7732 2222 34444445544 44444433222221111111 01111 1111111121 3455666666544
Q ss_pred hcccCceEeccCCCCCCHhHHhccCChhHHHh
Q 044794 193 LMKVSPLLIGYDIRSASGETLKILGNKEVIVV 224 (297)
Q Consensus 193 ~~~~sPLlig~Dl~~~~~~~~~lL~N~eliai 224 (297)
+ .+.++-||++++++.++.++ +.||+
T Consensus 306 --g--~~g~e~dl~~ls~~e~~~~~--~~ia~ 331 (394)
T PF02065_consen 306 --G--RLGLELDLTKLSEEELAAVK--EQIAF 331 (394)
T ss_dssp --S--EEEEESTGCGS-HHHHHHHH--HHHHH
T ss_pred --C--CceeccCcccCCHHHHHHHH--HHHHH
Confidence 5 78899999999998777774 44444
No 8
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=99.15 E-value=5.4e-11 Score=117.01 Aligned_cols=93 Identities=17% Similarity=0.231 Sum_probs=74.5
Q ss_pred cceeecCCCCCCCCC---CCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCcc----------------------
Q 044794 4 TQFLLANGLARTPPM---GHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRT---------------------- 58 (297)
Q Consensus 4 ~~~~ld~G~~~~~~~---g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~---------------------- 58 (297)
-.|+|||||++++-+ --|.|..+.+|||+|+..|++.||+.||+||||..|..-.
T Consensus 324 E~FvlDDGwfg~rndd~~slGDWlv~seKfPsgiE~li~~I~e~Gl~fGIWlePemvs~dSdlfrqHPDWvvk~~G~p~~ 403 (687)
T COG3345 324 ELFVLDDGWFGGRNDDLKSLGDWLVNSEKFPSGIEELIEAIAENGLIFGIWLEPEMVSEDSDLFRQHPDWVVKVNGYPLM 403 (687)
T ss_pred EEEEEccccccccCcchhhhhceecchhhccccHHHHHHHHHHcCCccceeecchhcccchHHHhhCCCeEEecCCcccc
Confidence 369999999976532 2588999999999999999999999999999999997311
Q ss_pred ----------CCC------CCCCcchhHHhHHHHHH-hhCccEEEeeCCCCCCCC
Q 044794 59 ----------CSN------TMPGSLGHELQDEGTFA-QWGIDYLKYDNCFHDGSK 96 (297)
Q Consensus 59 ----------C~~------~~pGs~~~~~~d~~~fa-~WGvDylK~D~c~~~~~~ 96 (297)
|.. .++-++-+...++..++ +||..+.|+|+.+++...
T Consensus 404 ~~Rnqyvl~~s~p~vv~~l~~~l~qll~~~~v~ylkwdmnr~l~klg~~~~~~l~ 458 (687)
T COG3345 404 AGRNQYVLWLSNPIVVLDLSEDLVQLLLFHLVSYLKWDMNRELFKLGFLFWGALP 458 (687)
T ss_pred ccccchhhhccChHHHHHhhhHHHHHHHhhhHHHHHHHhCcceeecCCCCCcccc
Confidence 110 24556777778888888 999999999999887543
No 9
>PLN02219 probable galactinol--sucrose galactosyltransferase 2
Probab=99.10 E-value=1.8e-08 Score=103.11 Aligned_cols=202 Identities=12% Similarity=0.070 Sum_probs=128.9
Q ss_pred cceeecCCCCCCCCCC----------------CCCeeecCC--------CCCCChHHHHHHHHH-CCCe-eeEEecCC--
Q 044794 4 TQFLLANGLARTPPMG----------------HGNLRAKTS--------TFPSGIKALADYVHA-KGLR-LGIYSDAG-- 55 (297)
Q Consensus 4 ~~~~ld~G~~~~~~~g----------------~G~l~~d~~--------rFP~Glk~lad~ih~-~Glk-~GiY~~~g-- 55 (297)
.-+.||||||..-..+ .-++.+|++ .||.|||.+++.|++ .|+| .|+|.+..
T Consensus 233 ~~viIDDGwQsi~~~~~~~~~~~~~g~qf~~rL~~f~en~KF~~~~~~~~fp~Glk~~V~~iK~~~~vk~V~VWHAL~GY 312 (775)
T PLN02219 233 KFLIIDDGWQQIENKEKDENCVVQEGAQFATRLTGIKENAKFQKNDQKNEQVSGLKHVVDDAKQRHNVKQVYVWHALAGY 312 (775)
T ss_pred eEEEEccCccccccccccccccccccchhhhhhccccccccccccccccCCCCcHHHHHHHHHhccCCcEEEEeeeccce
Confidence 4578999999864321 224445543 589999999999985 6887 88887641
Q ss_pred -------C---c--cCC-----------C------------------CCCCcchhHHhHHHHHHhhCccEEEeeCCCC--
Q 044794 56 -------F---R--TCS-----------N------------------TMPGSLGHELQDEGTFAQWGIDYLKYDNCFH-- 92 (297)
Q Consensus 56 -------~---~--~C~-----------~------------------~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~-- 92 (297)
. . .+. + ....++.+|+.....+++-|||+||+|.-..
T Consensus 313 WGGv~P~~~~~~~Y~~~~~~p~~spg~~~~~pd~a~d~l~~~G~glV~P~~~~~FYd~~hsyLas~GVDgVKVDvQ~~Le 392 (775)
T PLN02219 313 WGGVKPAAAGMEHYDSALAYPVQSPGVLGNQPDIVMDSLSVHGLGLVNPKKVFNFYNELHAYLASCGVDGVKVDVQNIIE 392 (775)
T ss_pred ecCcCCCCcccccccccccccccCCCccccCcchhhhhhhhCCccccCHHHHHHHHHHHHHHHHHcCCCEEEEchhhhHH
Confidence 0 0 000 0 0112467788888899999999999998652
Q ss_pred ---CCC-ChHHHHHHHHHHHHHc------CCCeEEecCCcc--hhhhcccccEEEecCCCCCChhhHH--HHHHh--ccc
Q 044794 93 ---DGS-KPQERYTKMSYALLKA------GRPILYSIWGTK--IQRNGLVRNAWRTTGDIRDKWESIT--SIADQ--NNV 156 (297)
Q Consensus 93 ---~~~-~~~~~y~~m~~al~~~------gr~i~~s~wg~~--~~~~~~~~n~wRis~Di~~~W~~i~--~~~~~--~~~ 156 (297)
.+. ...+.-++..+||+++ ++.++ +|.... -.|-.......|.|.|-++.+.... .++.. +..
T Consensus 393 ~L~~~~ggrv~la~~y~~ALe~S~~r~F~~ng~I-~CMsh~~d~i~~~k~sav~R~SDDF~P~dP~sh~~Hi~~nAyNSL 471 (775)
T PLN02219 393 TLGAGHGGRVSLTRSYQQALEASIARNFTDNGCI-SCMCHNTDGLYSAKQTAVVRASDDFYPRDPASHTIHISSVAYNTL 471 (775)
T ss_pred HhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeE-EecccCchhhhcccccceeecccccccCCCccCcchhhhhhhhhH
Confidence 111 1123334556666644 44444 442222 3344567889999999887665421 12211 111
Q ss_pred cccccCCCcCCCCCccccCCCCCCHHHHHHHHHHhhhcccCceEeccCCCCCCHhHHhc
Q 044794 157 WGRFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKI 215 (297)
Q Consensus 157 ~~~~~~pg~wnD~DmL~vG~~~lT~~E~rt~~slWa~~~~sPLlig~Dl~~~~~~~~~l 215 (297)
| .+.--|||=||..-.++ -.+.|.+.-|+.+ .|+.|+|-+-+-+-+.+.=
T Consensus 472 l---lg~~v~PDWDMFqS~Hp-----~A~~HAaaRAiSG-GPIYvSD~PG~Hdf~LLk~ 521 (775)
T PLN02219 472 F---LGEFMQPDWDMFHSLHP-----AAEYHGAARAVGG-CAIYVSDKPGNHNFDLLRK 521 (775)
T ss_pred H---hccccccCchhceecCc-----cHHHHHHHHhhcC-CcEEEecCCCCccHHHHHH
Confidence 2 23336999999986553 3489999999999 9999999887665554443
No 10
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=99.03 E-value=1.3e-08 Score=95.66 Aligned_cols=183 Identities=17% Similarity=0.272 Sum_probs=116.5
Q ss_pred cceeecCCCCCCCCCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCccCC-----------------------
Q 044794 4 TQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCS----------------------- 60 (297)
Q Consensus 4 ~~~~ld~G~~~~~~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C~----------------------- 60 (297)
..+.||+||... .+.+.+..|++|||+ ++.|++.||++|+|++++..|+.....
T Consensus 41 d~~~lD~~w~~~--~~~~~f~~d~~~FPd-~~~~i~~l~~~G~~~~~~~~P~i~~~~~~~~e~~~~g~~v~~~~g~~~~~ 117 (308)
T cd06593 41 DVIHLDCFWMKE--FQWCDFEFDPDRFPD-PEGMLSRLKEKGFKVCLWINPYIAQKSPLFKEAAEKGYLVKKPDGSVWQW 117 (308)
T ss_pred eEEEEecccccC--CcceeeEECcccCCC-HHHHHHHHHHCCCeEEEEecCCCCCCchhHHHHHHCCeEEECCCCCeeee
Confidence 458899999853 223489999999998 999999999999999999998742100
Q ss_pred -----------CCCCCcchhHHhHHHHHHhhCccEEEeeCCCC--------CCCC---hHHHH-----HHHHHHHHHc--
Q 044794 61 -----------NTMPGSLGHELQDEGTFAQWGIDYLKYDNCFH--------DGSK---PQERY-----TKMSYALLKA-- 111 (297)
Q Consensus 61 -----------~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~--------~~~~---~~~~y-----~~m~~al~~~-- 111 (297)
-++|.+..|.....+.+.++|||++|.|++.. .+.. ....| ..+.+++++.
T Consensus 118 ~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gid~~~~D~~e~~p~~~~~~~g~~~~~~hn~y~~~~~~~~~~~~~~~~~ 197 (308)
T cd06593 118 DLWQPGMGIIDFTNPDACKWYKDKLKPLLDMGVDCFKTDFGERIPTDVVYYDGSDGEKMHNYYALLYNKAVYEATKEVKG 197 (308)
T ss_pred cccCCCcccccCCCHHHHHHHHHHHHHHHHhCCcEEecCCCCCCCccccccCCCCcceeeeHHHHHHHHHHHHHHHHhcC
Confidence 03577788888888889999999999999863 1111 11122 2334555433
Q ss_pred -CCCeEEec--C-CcchhhhcccccEEEecCCCCCChhhHHHHHHhccccccccCCCcCCCCCccccCCCCCCHHHHHHH
Q 044794 112 -GRPILYSI--W-GTKIQRNGLVRNAWRTTGDIRDKWESITSIADQNNVWGRFAGPGRWNDPDMLEVGNGGMSLEEYRSH 187 (297)
Q Consensus 112 -gr~i~~s~--w-g~~~~~~~~~~n~wRis~Di~~~W~~i~~~~~~~~~~~~~~~pg~wnD~DmL~vG~~~lT~~E~rt~ 187 (297)
.||++++= + |. ..++-.| ++|...+|+.+...+...... ...|-..| =+|+ -|-.+....|-.++
T Consensus 198 ~~r~~~~~Rs~~~Gs-----qry~~~w--~GD~~s~w~~L~~~i~~~l~~-~l~G~~~~-g~Di--gGf~~~~~~EL~~R 266 (308)
T cd06593 198 EGEAVVWARSAWAGS-----QKYPVHW--GGDCESTFEGMAESLRGGLSL-GLSGFGFW-SHDI--GGFEGTPPPDLYKR 266 (308)
T ss_pred CCCeEEEEcCCcccc-----ccCCCEE--CCCcccCHHHHHHHHHHHHhc-cccCCcee-cCcc--CCcCCCCCHHHHHH
Confidence 36888875 2 22 2455567 999999999988777643322 12222122 1232 11112234565555
Q ss_pred HHHhhhcccCceEec
Q 044794 188 FSIWPLMKVSPLLIG 202 (297)
Q Consensus 188 ~slWa~~~~sPLlig 202 (297)
-.-++++. |++-.
T Consensus 267 W~q~gaf~--P~~r~ 279 (308)
T cd06593 267 WAQFGLLS--SHSRL 279 (308)
T ss_pred HHHhCcCC--ccccc
Confidence 54444444 76655
No 11
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=98.96 E-value=1.6e-08 Score=94.99 Aligned_cols=183 Identities=17% Similarity=0.235 Sum_probs=114.6
Q ss_pred ccceeecCCCCCCCCCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCc------------------cCC----
Q 044794 3 YTQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFR------------------TCS---- 60 (297)
Q Consensus 3 ~~~~~ld~G~~~~~~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~------------------~C~---- 60 (297)
+..+.||+||+.. .|.++.|++|||+ ++.++++||++|+|++++..|... .++
T Consensus 46 ~d~i~iD~~w~~~----~g~f~~d~~~FPd-p~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~~vk~~~g~~~~ 120 (303)
T cd06592 46 NGQIEIDDNWETC----YGDFDFDPTKFPD-PKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGYLVSEPSGDIPA 120 (303)
T ss_pred CCeEEeCCCcccc----CCccccChhhCCC-HHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCeEEECCCCCCCc
Confidence 3578999999753 6889999999998 999999999999999999999631 011
Q ss_pred ------C-------CCCCcchhHHhHHHHHH-hhCccEEEeeCCCCCC----------CChHHHHH-HHHHHHHHcCCCe
Q 044794 61 ------N-------TMPGSLGHELQDEGTFA-QWGIDYLKYDNCFHDG----------SKPQERYT-KMSYALLKAGRPI 115 (297)
Q Consensus 61 ------~-------~~pGs~~~~~~d~~~fa-~WGvDylK~D~c~~~~----------~~~~~~y~-~m~~al~~~gr~i 115 (297)
+ ++|.++.+....++.+. ++|||++|+|++.+.. ......|. .+.++..+.+ ++
T Consensus 121 ~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~p~~~~~~~~~~~~n~y~~~~~~~~~~~~-~~ 199 (303)
T cd06592 121 LTRWWNGTAAVLDFTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEASYLPQDYVTEDPLLNPDEYTRLYAEMVAEFG-DL 199 (303)
T ss_pred ccceecCCcceEeCCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCcccCCcccccCCcccCHHHHHHHHHHHHHhhc-cc
Confidence 0 36778888877777765 9999999999987521 11123343 4556655554 66
Q ss_pred EEec--CCcchhhhccc-ccEEEecCCCCCChhhH---HHHHHhccccccccCCCcCCCCCcc---ccCC---CCCCHHH
Q 044794 116 LYSI--WGTKIQRNGLV-RNAWRTTGDIRDKWESI---TSIADQNNVWGRFAGPGRWNDPDML---EVGN---GGMSLEE 183 (297)
Q Consensus 116 ~~s~--wg~~~~~~~~~-~n~wRis~Di~~~W~~i---~~~~~~~~~~~~~~~pg~wnD~DmL---~vG~---~~lT~~E 183 (297)
+++= |.. .++ +-.| ++|...+|+.. ..++...... ..+|-..| =+|++ ..+. ......|
T Consensus 200 ~~~Rsg~~g-----~~~~~~~w--~GD~~s~W~~~~gl~~~i~~~L~~-~lsG~~~w-~~D~iGGf~~~~~~~~~~~~~E 270 (303)
T cd06592 200 IEVRAGWRS-----QGLPLFVR--MMDKDSSWGGDNGLKSLIPTALTM-GLLGYPFV-LPDMIGGNAYGGNSDDELPDKE 270 (303)
T ss_pred eEEEeeeec-----CCCCeeEE--cCCCCCCCCCCcCHHHHHHHHHHh-hccCCccc-CCCccCCccccccccCCCCCHH
Confidence 6643 221 222 2334 78998999876 5555421111 11222222 23322 0000 0123567
Q ss_pred HHHHHHHhhhcccCceEec
Q 044794 184 YRSHFSIWPLMKVSPLLIG 202 (297)
Q Consensus 184 ~rt~~slWa~~~~sPLlig 202 (297)
-..+-.-++++. |+|=-
T Consensus 271 L~~RW~q~g~f~--P~~R~ 287 (303)
T cd06592 271 LYIRWLQLSAFL--PVMQF 287 (303)
T ss_pred HHHHHHHHHHhC--hhhhc
Confidence 776666666666 77643
No 12
>PLN02711 Probable galactinol--sucrose galactosyltransferase
Probab=98.85 E-value=5.7e-07 Score=92.32 Aligned_cols=180 Identities=14% Similarity=0.047 Sum_probs=108.8
Q ss_pred CCCCCCChHHHHHHHHHC--CCe-eeEEecCC---------C------------------ccCCC-------------CC
Q 044794 27 TSTFPSGIKALADYVHAK--GLR-LGIYSDAG---------F------------------RTCSN-------------TM 63 (297)
Q Consensus 27 ~~rFP~Glk~lad~ih~~--Glk-~GiY~~~g---------~------------------~~C~~-------------~~ 63 (297)
+..||.|||.+++.|+++ |+| .|+|.+.. . .++.. -+
T Consensus 300 ~~~~p~Glk~~v~~iK~~~~~vk~VyVWHAL~GYWGGv~P~~~~~~~~~~~~p~~spg~~~~~~d~~~d~~~~~g~glv~ 379 (777)
T PLN02711 300 KSLSNKGMGAFIRDLKEEFKTVDYVYVWHALCGYWGGLRPNVPGLPESKVVAPKLSPGLKMTMEDLAVDKIVNNGVGLVP 379 (777)
T ss_pred cCCCCCcHHHHHHHHHhhCCCCCEEEEeeeccCcccCcCCCCCCCccceeeccccCcccccccccccccccccCcccccC
Confidence 445788999999999995 787 88887641 0 00000 01
Q ss_pred C-CcchhHHhHHHHHHhhCccEEEeeCCCC----C-CC-ChHHHHHHHHHHHHHc------CCCeEEecCCcchh-h--h
Q 044794 64 P-GSLGHELQDEGTFAQWGIDYLKYDNCFH----D-GS-KPQERYTKMSYALLKA------GRPILYSIWGTKIQ-R--N 127 (297)
Q Consensus 64 p-Gs~~~~~~d~~~fa~WGvDylK~D~c~~----~-~~-~~~~~y~~m~~al~~~------gr~i~~s~wg~~~~-~--~ 127 (297)
| .++.+++.....+++-|||+||+|.... . +. ...+..++..+||+++ ++-++ +|...... + .
T Consensus 380 Pe~~~~FY~~~hs~Las~GVDgVKVDvQ~~Le~l~~~~Ggrv~la~ay~~ALe~S~~r~F~~ng~I-~CMs~~~d~~~~~ 458 (777)
T PLN02711 380 PELAYQMYEGLHSHLQSVGIDGVKVDVIHLLEMLCEEYGGRVELAKAYYKALTASVRKHFNGNGVI-ASMEHCNDFMFLG 458 (777)
T ss_pred HHHHHHHHHHHHHHHHHcCCCeEEEchhhhHhhhcccCCcHHHHHHHHHHHHHHHHHHhCCCCCeE-eecccCchhhhcc
Confidence 1 2467788888899999999999997543 1 11 1223334555666543 34444 44222211 1 2
Q ss_pred cccccEEEecCCCCCC----------hhhHHHHHHhccccccccCCCcCCCCCccccCCCCCCHHHHHHHHHHhhhcccC
Q 044794 128 GLVRNAWRTTGDIRDK----------WESITSIADQNNVWGRFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVS 197 (297)
Q Consensus 128 ~~~~n~wRis~Di~~~----------W~~i~~~~~~~~~~~~~~~pg~wnD~DmL~vG~~~lT~~E~rt~~slWa~~~~s 197 (297)
.+....-|.|.|-++. |-.-..++..+.. +-+.+.--|||=||..--++ -.+.|.+.-|+.+ .
T Consensus 459 tk~~av~R~SDDF~p~dP~sh~~g~~W~~~~Hi~~~AyN-SLllg~~v~PDWDMF~S~Hp-----~A~~HAaaRAisG-G 531 (777)
T PLN02711 459 TEAISLGRVGDDFWCTDPSGDPNGTFWLQGCHMVHCAYN-SLWMGNFIHPDWDMFQSTHP-----CAEFHAASRAISG-G 531 (777)
T ss_pred CcccceeeecccccCCCCccccccccccccceeeeehhh-hhhhcccccCCchhhhccCc-----hHHHHHHHHhhcC-C
Confidence 3456789999997642 4111111111000 11123346899999986553 5689999999999 9
Q ss_pred ceEeccCCCCCCHhHHh
Q 044794 198 PLLIGYDIRSASGETLK 214 (297)
Q Consensus 198 PLlig~Dl~~~~~~~~~ 214 (297)
|+.|+|-.-+-+-+.+.
T Consensus 532 PIYVSD~pG~Hdf~LLk 548 (777)
T PLN02711 532 PIYVSDSVGKHNFPLLK 548 (777)
T ss_pred CEEEecCCCCccHHHHH
Confidence 99999988765544333
No 13
>PLN02355 probable galactinol--sucrose galactosyltransferase 1
Probab=98.85 E-value=8.4e-07 Score=91.14 Aligned_cols=202 Identities=14% Similarity=0.086 Sum_probs=127.0
Q ss_pred cceeecCCCCCCCCC--C--------------CCCeeecCCCCC-------------CChHHHHHHHHH-CCCe-eeEEe
Q 044794 4 TQFLLANGLARTPPM--G--------------HGNLRAKTSTFP-------------SGIKALADYVHA-KGLR-LGIYS 52 (297)
Q Consensus 4 ~~~~ld~G~~~~~~~--g--------------~G~l~~d~~rFP-------------~Glk~lad~ih~-~Glk-~GiY~ 52 (297)
.-+.||||||..... + .-++.+|+ ||| .|||.+++.|++ .|+| .|+|.
T Consensus 237 ~~viIDDGwQs~~~d~~~~~~~~~~~~q~~~rL~~f~~n~-KF~~~~~~~~~~~~~~~Glk~~V~~iK~~~~vk~V~VWH 315 (758)
T PLN02355 237 KFVIIDDGWQSVGMDPTGIECLADNSANFANRLTHIKENH-KFQKNGKEGHRVDDPALGLGHIVTEIKEKHSLKYVYVWH 315 (758)
T ss_pred cEEEEeccccccccccccccccccccchhhhhhccccccc-cccccccccccccCCCCcHHHHHHHHHhhcCCcEEEEee
Confidence 457899999984211 1 12345565 677 499999999986 6887 88887
Q ss_pred cCC---------Cc----------cCCCC-----------------------CC-CcchhHHhHHHHHHhhCccEEEeeC
Q 044794 53 DAG---------FR----------TCSNT-----------------------MP-GSLGHELQDEGTFAQWGIDYLKYDN 89 (297)
Q Consensus 53 ~~g---------~~----------~C~~~-----------------------~p-Gs~~~~~~d~~~fa~WGvDylK~D~ 89 (297)
+.. .. .+... +| .++.+++.....+++-|||+||+|.
T Consensus 316 AL~GYWGGv~P~~~~~~~Y~~~~~~p~~spGv~~~~~~~a~d~i~~~G~glv~Pe~~~~FY~~~hsyL~s~GVDgVKVD~ 395 (758)
T PLN02355 316 AITGYWGGVKPGVAGMEHYESKMSYPVSSPGVQSNEPCDALESITTNGLGLVNPEKVFSFYNELHSYLASAGIDGVKVDV 395 (758)
T ss_pred eecceecCcCCCCcccccccccccccccCCcccccCcchhhhhcccCceeccCHHHHHHHHHHHHHHHHHcCCCeEEEch
Confidence 641 00 00000 11 1467788888899999999999998
Q ss_pred CCC-----CCC-ChHHHHHHHHHHHHHc------CCCeEEecCCcc--hhhhcccccEEEecCCCCCChhhHH--HHHHh
Q 044794 90 CFH-----DGS-KPQERYTKMSYALLKA------GRPILYSIWGTK--IQRNGLVRNAWRTTGDIRDKWESIT--SIADQ 153 (297)
Q Consensus 90 c~~-----~~~-~~~~~y~~m~~al~~~------gr~i~~s~wg~~--~~~~~~~~n~wRis~Di~~~W~~i~--~~~~~ 153 (297)
-.. .+. ...+.-++..+||+++ ++-++-|+ +.. -.|-.......|.|.|-.+.+.... .++..
T Consensus 396 Q~~le~l~~g~ggrv~la~~y~~ALe~S~~r~F~~ngvI~CM-s~~~d~i~~~k~sav~R~SDDF~P~dP~sh~~Hi~~~ 474 (758)
T PLN02355 396 QNILETLGAGHGGRVKLARKYHQALEASIARNFPDNGIISCM-SHNTDGLYSAKRTAVIRASDDFWPRDPASHTIHIASV 474 (758)
T ss_pred hhhHHHhhcCCCcHHHHHHHHHHHHHHHHHHhCCCCceEEec-ccCchhhcccccceeeeeccccccCCCccCchhhhhh
Confidence 643 111 1223333455666543 44544333 222 3334567899999999988765421 22221
Q ss_pred ccccccccCCCcCCCCCccccCCCCCCHHHHHHHHHHhhhcccCceEeccCCCCCCHhHHh
Q 044794 154 NNVWGRFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLK 214 (297)
Q Consensus 154 ~~~~~~~~~pg~wnD~DmL~vG~~~lT~~E~rt~~slWa~~~~sPLlig~Dl~~~~~~~~~ 214 (297)
+.. +-+.+.--|||=||..-.++ -.+.|.+.-|+.+ .|+.|+|-+-+-+-+.+.
T Consensus 475 AyN-SLllg~~v~PDWDMF~S~hp-----~A~~HAaaRAisG-GPIYvSD~PG~hdf~LLk 528 (758)
T PLN02355 475 AYN-TIFLGEFMQPDWDMFHSLHP-----MAEYHAAARAVGG-CAIYVSDKPGQHDFNLLK 528 (758)
T ss_pred hhh-hhhhccccccCcccceecCc-----cHHHHHHHHhccC-CcEEEecCCCCccHHHHH
Confidence 111 11133356999999986553 3679999999999 999999988765555443
No 14
>PF05691 Raffinose_syn: Raffinose synthase or seed imbibition protein Sip1; InterPro: IPR008811 This family consists of several raffinose synthase proteins, also known as seed imbibition (Sip1) proteins. Raffinose (O-alpha- D-galactopyranosyl- (1-->6)- O-alpha- D-glucopyranosyl-(1-->2)- O-beta- D-fructofuranoside) is a widespread oligosaccharide in plant seeds and other tissues. Raffinose synthase (2.4.1.82 from EC) is the key enzyme that channels sucrose into the raffinose oligosaccharide pathway [].
Probab=98.85 E-value=4.1e-08 Score=101.01 Aligned_cols=190 Identities=17% Similarity=0.196 Sum_probs=118.3
Q ss_pred CCCCCChHHHHHHHHHC--CCe-eeEEecCC-----Cc---------c---CC------CC-----------------CC
Q 044794 28 STFPSGIKALADYVHAK--GLR-LGIYSDAG-----FR---------T---CS------NT-----------------MP 64 (297)
Q Consensus 28 ~rFP~Glk~lad~ih~~--Glk-~GiY~~~g-----~~---------~---C~------~~-----------------~p 64 (297)
+.||+||+.+++.|+++ |+| .|+|.+.- .. . +. .. +|
T Consensus 284 ~~~~~GL~~~V~~ik~~~~~Ik~V~VWHAL~GYWgGi~P~~~~~~~~k~~~~~~spg~~~~~~d~~~d~~~~~g~glv~p 363 (747)
T PF05691_consen 284 EAFPSGLKHFVSDIKEKFPGIKYVYVWHALCGYWGGISPDGMLAYNYKLVYPKLSPGLQGNMPDLAVDSIVKGGLGLVDP 363 (747)
T ss_pred cCCcccHHHHHHHHHhhCCCCCEEEEeehhcceecCcCCCCccccccceeecccCCcccccCccccccccccCcccccCH
Confidence 46999999999999999 898 88888651 00 0 00 00 11
Q ss_pred -CcchhHHhHHHHHHhhCccEEEeeCCCC-----CCC-ChHHHHHHHHHHHHHc------CCCeEEecCCcc--hhhh-c
Q 044794 65 -GSLGHELQDEGTFAQWGIDYLKYDNCFH-----DGS-KPQERYTKMSYALLKA------GRPILYSIWGTK--IQRN-G 128 (297)
Q Consensus 65 -Gs~~~~~~d~~~fa~WGvDylK~D~c~~-----~~~-~~~~~y~~m~~al~~~------gr~i~~s~wg~~--~~~~-~ 128 (297)
.++.+|+.....+++-|||+||+|.-.. .+. ...+.-+++.+||+++ |..++-|+ ... ..|. .
T Consensus 364 ~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~l~~l~~~~ggrv~la~ay~~AL~~S~~r~F~~~~vI~CM-sh~~~~l~~~~ 442 (747)
T PF05691_consen 364 EDAFRFYDDFHSYLASAGVDGVKVDVQAILETLGEGYGGRVELARAYQDALEASVARHFSGNGVINCM-SHNPDNLYHST 442 (747)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEchhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeEEec-CCCccchhccc
Confidence 2456788888899999999999998643 111 1122233444555433 45555444 222 2233 3
Q ss_pred ccccEEEecCCCCCChhh----------HHHHHHhccccccccCCCcCCCCCccccCCCCCCHHHHHHHHHHhhhcccCc
Q 044794 129 LVRNAWRTTGDIRDKWES----------ITSIADQNNVWGRFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSP 198 (297)
Q Consensus 129 ~~~n~wRis~Di~~~W~~----------i~~~~~~~~~~~~~~~pg~wnD~DmL~vG~~~lT~~E~rt~~slWa~~~~sP 198 (297)
......|+|.|-.+.+.. ...++..+.. +-+.+.--|+|-||..--++ -.+.|.+.-||.+ +|
T Consensus 443 ~~~av~R~SDDF~P~~p~s~p~g~~w~h~~Hi~~nAyN-sL~~g~~~~PDwDMF~S~h~-----~A~~HAaaRaiSG-GP 515 (747)
T PF05691_consen 443 KQSAVVRNSDDFFPRDPASDPNGVFWLHTWHIAHNAYN-SLLLGQFVWPDWDMFQSSHP-----AAEFHAAARAISG-GP 515 (747)
T ss_pred ccccceeccccccCCCCCCCccccchhhHHHHHHHHHH-HHHHHhhcCCCcccccccCc-----cHHHHHHHHhhcC-CC
Confidence 456789999998875442 2233332111 11123347899999986543 4678999999999 99
Q ss_pred eEeccCCCCCCHhHHh--ccCChhHHHhc
Q 044794 199 LLIGYDIRSASGETLK--ILGNKEVIVVN 225 (297)
Q Consensus 199 Llig~Dl~~~~~~~~~--lL~N~eliain 225 (297)
+.|+|-+-+-+-+.+. +|.+-.||...
T Consensus 516 VYiSD~pG~hd~~LLk~LvlpDG~ilR~~ 544 (747)
T PF05691_consen 516 VYISDKPGKHDFDLLKKLVLPDGSILRAD 544 (747)
T ss_pred EEEeeCCCCCCHHHHHHhhCCCCceeccc
Confidence 9999998776655433 33444455443
No 15
>PLN02684 Probable galactinol--sucrose galactosyltransferase
Probab=98.79 E-value=1.6e-07 Score=96.11 Aligned_cols=204 Identities=17% Similarity=0.116 Sum_probs=127.9
Q ss_pred cceeecCCCCCCCCCC---------------CCCeeecCCCCCC------ChHHHHHHHH-HCCCe-eeEEecCC-----
Q 044794 4 TQFLLANGLARTPPMG---------------HGNLRAKTSTFPS------GIKALADYVH-AKGLR-LGIYSDAG----- 55 (297)
Q Consensus 4 ~~~~ld~G~~~~~~~g---------------~G~l~~d~~rFP~------Glk~lad~ih-~~Glk-~GiY~~~g----- 55 (297)
.-+.||||||..-..+ .-++.++ .|||. |||.+++.|+ +.|+| .|+|.+..
T Consensus 236 ~~vIIDDGwQs~~~d~~~~~~~~~~~q~~~rL~~f~en-~KF~~~~~p~~Glk~~V~~iK~~~~vk~V~VWHAL~GYWGG 314 (750)
T PLN02684 236 KFVIIDDGWQSVGGDPTVEAGDEKKEQPLLRLTGIKEN-EKFKKKDDPNVGIKNIVNIAKEKHGLKYVYVWHAITGYWGG 314 (750)
T ss_pred eEEEEecccccccccccccccccccchhhhhhccCccc-cccccccCCCccHHHHHHHHHhhcCCcEEEEEeeecccccc
Confidence 4578999999864322 1123454 67874 9999999997 66888 88887641
Q ss_pred ----C---c--c-----CC------CC-----------------CCC-cchhHHhHHHHHHhhCccEEEeeCCCC----C
Q 044794 56 ----F---R--T-----CS------NT-----------------MPG-SLGHELQDEGTFAQWGIDYLKYDNCFH----D 93 (297)
Q Consensus 56 ----~---~--~-----C~------~~-----------------~pG-s~~~~~~d~~~fa~WGvDylK~D~c~~----~ 93 (297)
. . . |. .. +|. ++.+++.....+++-|||+||+|.-.. .
T Consensus 315 v~P~~~~~~~Y~s~~~~p~~s~gv~~~~p~~~~d~l~~~g~glv~P~~~~~FYd~~hsyL~s~GVDgVKVD~Q~~le~l~ 394 (750)
T PLN02684 315 VRPGVKEMEEYGSVMKYPNVSKGVVENDPTWKTDVMTLQGLGLVNPKKVYKFYNELHSYLADAGIDGVKVDVQCILETLG 394 (750)
T ss_pred cCCCCcchhhccccccccccCccccccCccccccccccCcccccCHHHHHHHHHHHHHHHHHcCCCeEEEChhhhHHHhh
Confidence 0 0 0 00 00 111 467788888999999999999998652 1
Q ss_pred -CCC-hHHHHHHHHHHHHHc------CCCeEEecCCcc--hhhhcccccEEEecCCCCCChhhH--HHHHHhcccccccc
Q 044794 94 -GSK-PQERYTKMSYALLKA------GRPILYSIWGTK--IQRNGLVRNAWRTTGDIRDKWESI--TSIADQNNVWGRFA 161 (297)
Q Consensus 94 -~~~-~~~~y~~m~~al~~~------gr~i~~s~wg~~--~~~~~~~~n~wRis~Di~~~W~~i--~~~~~~~~~~~~~~ 161 (297)
+.. ..+.-++..+||+++ ++-++ +|.... -.|........|.|.|-++.+..- ..++..+.. +-+.
T Consensus 395 ~~~ggrv~l~~ay~~ALe~S~~r~F~~ngvI-~CMs~~~d~i~~sk~sav~R~SDDF~p~dP~sh~~Hi~~~AyN-SLll 472 (750)
T PLN02684 395 AGLGGRVELTRQYHQALDASVARNFPDNGCI-ACMSHNTDALYCSKQTAVVRASDDFYPRDPVSHTIHIAAVAYN-SVFL 472 (750)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHhCCCCCeE-EecccCchhhhcccccceeeeccccccCCCccchhhhhhhhhh-hhhh
Confidence 111 123334555676644 23334 442322 234456789999999988866542 122221111 1112
Q ss_pred CCCcCCCCCccccCCCCCCHHHHHHHHHHhhhcccCceEeccCCCCCCHhHHhcc
Q 044794 162 GPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKIL 216 (297)
Q Consensus 162 ~pg~wnD~DmL~vG~~~lT~~E~rt~~slWa~~~~sPLlig~Dl~~~~~~~~~lL 216 (297)
+.--|||=||..-.++ -.+.|.+.-|+.+ .|+.|+|-+-+-+-+.+.=|
T Consensus 473 g~~v~PDWDMFqS~hp-----~A~~HAaaRAisG-GPIYvSD~PG~Hdf~LLk~L 521 (750)
T PLN02684 473 GEFMQPDWDMFHSLHP-----AAEYHASARAISG-GPLYVSDAPGKHNFELLKKL 521 (750)
T ss_pred ccccccCcccceecCc-----cHHHHHHHHhhcC-CceEEecCCCCccHHHHHhh
Confidence 3346999999986654 3489999999999 99999998876655544433
No 16
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=98.67 E-value=8.8e-07 Score=81.67 Aligned_cols=172 Identities=20% Similarity=0.216 Sum_probs=108.3
Q ss_pred cceeecCCCCCCCCCCCCCe--eecCCCCCCChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHH-Hhh
Q 044794 4 TQFLLANGLARTPPMGHGNL--RAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTF-AQW 80 (297)
Q Consensus 4 ~~~~ld~G~~~~~~~g~G~l--~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~f-a~W 80 (297)
..+.||++|... .+.. +.|+++||+ .+.++++||++|+|+.++..|+. ..+....++.+ .+.
T Consensus 41 d~~~lD~~~~~~----~~~f~~~~d~~~Fpd-p~~~i~~l~~~g~~~~~~~~P~v----------~~w~~~~~~~~~~~~ 105 (265)
T cd06589 41 DGFVLDDDYTDG----YGDFTFDWDAGKFPN-PKSMIDELHDNGVKLVLWIDPYI----------REWWAEVVKKLLVSL 105 (265)
T ss_pred cEEEECcccccC----CceeeeecChhhCCC-HHHHHHHHHHCCCEEEEEeChhH----------HHHHHHHHHHhhccC
Confidence 468899999864 5667 999999999 99999999999999999998865 55665655554 899
Q ss_pred CccEEEeeCCCCCCC-------------C---hHHHHH-----HHHHHHHHc---CCCeEEec---CCcchhhhcccccE
Q 044794 81 GIDYLKYDNCFHDGS-------------K---PQERYT-----KMSYALLKA---GRPILYSI---WGTKIQRNGLVRNA 133 (297)
Q Consensus 81 GvDylK~D~c~~~~~-------------~---~~~~y~-----~m~~al~~~---gr~i~~s~---wg~~~~~~~~~~n~ 133 (297)
|||++|+|.+..... . ....|. .+.+++++. .||++++- .|. ..+ .
T Consensus 106 Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~hn~y~~~~~~~~~~~~~~~~~~~r~~~~sRs~~~Gs-----qry--~ 178 (265)
T cd06589 106 GVDGFWTDMGEPSPGDGNIFTGGVVGRVKHEEMHNAYPLLYAEATYEALRKNSKNKRPFILSRSGYAGS-----QRY--A 178 (265)
T ss_pred CCCEEeccCCCCCcCCCccccCCcCCCccHHHHcchhHHHHHHHHHHHHHHhcCCCCeEEEEcCCcccc-----cCc--C
Confidence 999999999865211 0 011222 234555433 47888875 121 233 3
Q ss_pred EEecCCCCCChhhHHHHHHhccccccccCCCcCCCCCccccCCCC-CCHHHHHHHHHHhhhcccCceEecc
Q 044794 134 WRTTGDIRDKWESITSIADQNNVWGRFAGPGRWNDPDMLEVGNGG-MSLEEYRSHFSIWPLMKVSPLLIGY 203 (297)
Q Consensus 134 wRis~Di~~~W~~i~~~~~~~~~~~~~~~pg~wnD~DmL~vG~~~-lT~~E~rt~~slWa~~~~sPLlig~ 203 (297)
.=-++|...+|+.+...+....... ..|-..| =+|+- |-.+ -..+|-.++=.-++++. |++=..
T Consensus 179 ~~W~GD~~stW~~l~~~i~~~l~~~-l~G~~~~-g~Dig--Gf~~~~~~~EL~~RW~Q~g~F~--P~~R~H 243 (265)
T cd06589 179 GMWSGDNTSTWGYLRSQIPAGLTMS-MSGIPFV-GSDIG--GFTGGDPSAELYVRWFQFGAFT--PIMRFH 243 (265)
T ss_pred ceeCCcccCCHHHHHHHHHHHHhhh-ccCCccc-CCCcC--CCCCCCCCHHHHHHHHHHhcCC--cceecC
Confidence 3358899999999877765433221 1221111 23321 1111 24556666555555555 666443
No 17
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=98.62 E-value=4.9e-07 Score=88.81 Aligned_cols=183 Identities=19% Similarity=0.246 Sum_probs=111.1
Q ss_pred cceeecCCCCCCCCCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCccCCC----------------------
Q 044794 4 TQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSN---------------------- 61 (297)
Q Consensus 4 ~~~~ld~G~~~~~~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C~~---------------------- 61 (297)
..+.+|++|+.. .+.+..|+++||+ ++.+++.||++|+|+++|..|+..++..
T Consensus 60 d~~~iD~~~~~~----~~~f~~d~~~FPd-~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~~~~~v~~~~g~~ 134 (441)
T PF01055_consen 60 DVIWIDDDYQDG----YGDFTWDPERFPD-PKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKEKGYLVKNPDGSP 134 (441)
T ss_dssp EEEEE-GGGSBT----TBTT-B-TTTTTT-HHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHHTT-BEBCTTSSB
T ss_pred cceecccccccc----ccccccccccccc-hHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhhcCceeecccCCc
Confidence 457899999764 6789999999997 9999999999999999999997433221
Q ss_pred ---------------CCCCcchhHHhHHHHHHhh-CccEEEeeCCCCCC----------------CC---hHHHHH----
Q 044794 62 ---------------TMPGSLGHELQDEGTFAQW-GIDYLKYDNCFHDG----------------SK---PQERYT---- 102 (297)
Q Consensus 62 ---------------~~pGs~~~~~~d~~~fa~W-GvDylK~D~c~~~~----------------~~---~~~~y~---- 102 (297)
++|.+..+.....+.+.+. |||++|.|++.... .. ....|.
T Consensus 135 ~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~~~~~~~~~~~~~hn~y~~~~~ 214 (441)
T PF01055_consen 135 YIGRVWPGKGGFIDFTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPSSFDSNNTLPEDAVHHDGYSGYEMHNLYGLLYA 214 (441)
T ss_dssp -EEEETTEEEEEB-TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTBSSTTTBSBCTTEECTTECEHHHHGGGHHHHHH
T ss_pred ccccccCCcccccCCCChhHHHHHHHHHHHHHhccCCceEEeecCCcccccccccCcccceecCCCCchheeccccccch
Confidence 2455677777777777777 99999999965432 00 122233
Q ss_pred -HHHHHHHH---cCCCeEEecCCcchhhh--cccccEEEecCCCCCChhhHHHHHHhccccccccCCCcCCCCCccccCC
Q 044794 103 -KMSYALLK---AGRPILYSIWGTKIQRN--GLVRNAWRTTGDIRDKWESITSIADQNNVWGRFAGPGRWNDPDMLEVGN 176 (297)
Q Consensus 103 -~m~~al~~---~gr~i~~s~wg~~~~~~--~~~~n~wRis~Di~~~W~~i~~~~~~~~~~~~~~~pg~wnD~DmL~vG~ 176 (297)
...+++.+ ..||++++= ..|. ..++..| ++|+..+|+++...+......+ .+|-..| =+||- |.
T Consensus 215 ~~~~~~~~~~~~~~r~~~~sR----s~~~G~qr~~~~w--~GD~~s~w~~L~~~i~~~l~~~-~~G~~~~-g~Dig--G~ 284 (441)
T PF01055_consen 215 KATYEALREIDPNKRPFIFSR----SGWAGSQRYGGHW--SGDNSSSWDGLRSSIPAMLNMG-LSGYPFW-GSDIG--GF 284 (441)
T ss_dssp HHHHHHHHHHSTTSC-EEEES----SEETTGGGTCEEE--ECSSBSSHHHHHHHHHHHHHHH-CTT-SSE-EEEET---S
T ss_pred hhhhhhhhhccCCCCcceeec----ccCCCCCccceee--cccccccHHHHHHHHHHHHHHh-hhhccee-cCccc--cc
Confidence 23455544 467888876 1111 2456564 8899999999887765433221 1221111 12211 11
Q ss_pred CCCCHHHHHHHHHHhhhcccCceEecc
Q 044794 177 GGMSLEEYRSHFSIWPLMKVSPLLIGY 203 (297)
Q Consensus 177 ~~lT~~E~rt~~slWa~~~~sPLlig~ 203 (297)
.+...+|--++-.-++++. |++-..
T Consensus 285 ~~~~~~eL~~RW~q~~~f~--p~~r~h 309 (441)
T PF01055_consen 285 SGDPDEELYIRWYQFGAFS--PLFRNH 309 (441)
T ss_dssp BSTSSHHHHHHHHHHHTTS--SSEEEE
T ss_pred CCCCCHHHHHHHHHhhcCC--cceeec
Confidence 1124557666666666665 676654
No 18
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=98.60 E-value=1.5e-06 Score=82.33 Aligned_cols=187 Identities=14% Similarity=0.126 Sum_probs=118.4
Q ss_pred cceeecCCCCCCC--CCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCccCC---------------------
Q 044794 4 TQFLLANGLARTP--PMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCS--------------------- 60 (297)
Q Consensus 4 ~~~~ld~G~~~~~--~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C~--------------------- 60 (297)
..+.||.+|.... ....|.++.|++|||+ .+.|++.||++|+|+-++..|+..+..
T Consensus 41 d~i~lD~~w~~~~~~~~~~~~f~wd~~~FPd-p~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~l~~~~~~~~~ 119 (317)
T cd06598 41 DAAILDLYWFGKDIDKGHMGNLDWDRKAFPD-PAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKAGALLKKDQGGVP 119 (317)
T ss_pred eEEEEechhhcCcccCCceeeeEeccccCCC-HHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhCCCEEEECCCCCE
Confidence 4578999997643 2236789999999998 999999999999999999999742110
Q ss_pred --------------CCCCCcchhHHhHHHHHHhhCccEEEeeCCCCC-----C----CC---hHHHHH-----HHHHHHH
Q 044794 61 --------------NTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHD-----G----SK---PQERYT-----KMSYALL 109 (297)
Q Consensus 61 --------------~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~-----~----~~---~~~~y~-----~m~~al~ 109 (297)
.++|.++.+..+..+.+.+.|||.+|.|+|.+. . .. ....|. +..+++.
T Consensus 120 ~~~~~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~g~~~~~hN~y~~~~~~~~~e~~~ 199 (317)
T cd06598 120 TLFDFWFGNTGLIDWFDPAAQAWFHDNYKKLIDQGVTGWWGDLGEPEVHPPDMCHHKGKAAEVHNIYGHLWAKSIYEGYQ 199 (317)
T ss_pred eeeeccCCCccccCCCCHHHHHHHHHHHHHhhhCCccEEEecCCCccccCCccccCCCcHhHHhhHHHHHHHHHHHHHHH
Confidence 036778888888888889999999999999642 1 01 122232 2233444
Q ss_pred H---cCCCeEEec---CCcchhhhcccccEEEecCCCCCChhhHHHHHHhccccccccCCCcCCCCCccccCCC-C--CC
Q 044794 110 K---AGRPILYSI---WGTKIQRNGLVRNAWRTTGDIRDKWESITSIADQNNVWGRFAGPGRWNDPDMLEVGNG-G--MS 180 (297)
Q Consensus 110 ~---~gr~i~~s~---wg~~~~~~~~~~n~wRis~Di~~~W~~i~~~~~~~~~~~~~~~pg~wnD~DmL~vG~~-~--lT 180 (297)
+ ..||++++= .|.+ .++.+ -=++|...+|+.+...+....... .+|-..| =+| ||.. + .+
T Consensus 200 ~~~~~~r~~~~~Rs~~~Gsq-----ry~~~-~WsGD~~s~W~~L~~~i~~~l~~~-l~G~~~~-g~D---IGGf~~~~~~ 268 (317)
T cd06598 200 QNYPNERPFILMRAGFAGSQ-----RYGVI-PWSGDVGRTWDGLKSQPNAALQMS-MSGIDYY-HSD---IGGFAGGDEL 268 (317)
T ss_pred HhcCCCCeEEEEecCcCccc-----cCcCC-ccCCCCcCCHHHHHHHHHHHHhhh-ccCCccc-CCC---cCCcCCCCCC
Confidence 3 247888764 2322 23221 125899999999887776433221 1221111 122 2311 1 24
Q ss_pred HHHHHHHHHHhhhcccCceEeccC
Q 044794 181 LEEYRSHFSIWPLMKVSPLLIGYD 204 (297)
Q Consensus 181 ~~E~rt~~slWa~~~~sPLlig~D 204 (297)
++|-.++-.=++++. |++=...
T Consensus 269 ~~EL~~RW~q~g~f~--P~~R~H~ 290 (317)
T cd06598 269 DPELYTRWFQYGAFD--PPFRPHA 290 (317)
T ss_pred CHHHHHHHHHhccCC--cccccCC
Confidence 567777766666654 8877543
No 19
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=98.40 E-value=1e-05 Score=77.19 Aligned_cols=180 Identities=20% Similarity=0.196 Sum_probs=112.5
Q ss_pred cceeecCCCCCCCCCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCccCCC----------------------
Q 044794 4 TQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSN---------------------- 61 (297)
Q Consensus 4 ~~~~ld~G~~~~~~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C~~---------------------- 61 (297)
..+.||.+|.. +.+.+..|+++||+ .+.|.+.+|++|+|+-++..|....+..
T Consensus 41 d~i~lD~~~~~----~~~~f~~d~~~fPd-p~~m~~~l~~~g~~~~~~~~P~v~~~~~~~~~~e~~~~g~~v~~~~g~~~ 115 (339)
T cd06604 41 DAIYLDIDYMD----GYRVFTWDKERFPD-PKELIKELHEQGFKVVTIIDPGVKVDPGYDVYEEGLENDYFVKDPDGELY 115 (339)
T ss_pred ceEEECchhhC----CCCceeeccccCCC-HHHHHHHHHHCCCEEEEEEeCceeCCCCChHHHHHHHCCeEEECCCCCEE
Confidence 45789999975 46789999999998 9999999999999999999987432210
Q ss_pred --------------CCCCcchhHHhHHHHHHhhCccEEEeeCCCCCCC---------------------Ch---HHHHH-
Q 044794 62 --------------TMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGS---------------------KP---QERYT- 102 (297)
Q Consensus 62 --------------~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~~---------------------~~---~~~y~- 102 (297)
++|.+..+..+..+.+.+.|||++|+|++.+... +. ...|.
T Consensus 116 ~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~p~~~~~~~~~~~~~~~~~hn~y~~ 195 (339)
T cd06604 116 IGRVWPGLSAFPDFTNPKVREWWGSLYKKFVDLGVDGIWNDMNEPAVFNTPGKTTMPRDAVHRLDGGGGTHEEVHNVYGL 195 (339)
T ss_pred EEEecCCCccccCCCChHHHHHHHHHHHHHhhCCCceEeecCCCccccCCcccccCCccceeeCCCCCCcHhHhcchhhH
Confidence 3566677877778888899999999998753100 10 11222
Q ss_pred ----HHHHHHHHc---CCCeEEec---CCcchhhhcccccEEEecCCCCCChhhHHHHHHhccccccccCCCcCCCCCcc
Q 044794 103 ----KMSYALLKA---GRPILYSI---WGTKIQRNGLVRNAWRTTGDIRDKWESITSIADQNNVWGRFAGPGRWNDPDML 172 (297)
Q Consensus 103 ----~m~~al~~~---gr~i~~s~---wg~~~~~~~~~~n~wRis~Di~~~W~~i~~~~~~~~~~~~~~~pg~wnD~DmL 172 (297)
+..+++.+. .||++++= .|.+ .++-. -++|...+|+.+...+...... ...|-..| =+|
T Consensus 196 ~~~~a~~~~~~~~~~~~r~~~~sRs~~~G~q-----ry~~~--W~GD~~ssW~~L~~~i~~~l~~-~l~G~~~~-g~D-- 264 (339)
T cd06604 196 LMARATYEGLKKARPNERPFILTRAGYAGIQ-----RYAAV--WTGDNRSSWEHLRLSIPMLLNL-GLSGVPFV-GAD-- 264 (339)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEeccccccc-----ccccc--cCCcccCCHHHHHHHHHHHHHH-HhcCCccc-ccc--
Confidence 223444433 47888765 2222 23322 4789999999887766543221 12222222 122
Q ss_pred ccCC-CCCCHHHHHHHHHHhhhcccCceEec
Q 044794 173 EVGN-GGMSLEEYRSHFSIWPLMKVSPLLIG 202 (297)
Q Consensus 173 ~vG~-~~lT~~E~rt~~slWa~~~~sPLlig 202 (297)
||. .+-..+|-.++-.=++++. |++-.
T Consensus 265 -IGGf~~~~~~EL~~RW~Q~g~f~--P~~R~ 292 (339)
T cd06604 265 -IGGFGGDPSPELLVRWMQLGAFF--PFFRN 292 (339)
T ss_pred -cCCCCCCCCHHHHHHHHHHHhcc--chhhc
Confidence 111 0123456666555555555 77644
No 20
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=98.36 E-value=6.3e-06 Score=77.14 Aligned_cols=138 Identities=17% Similarity=0.239 Sum_probs=95.4
Q ss_pred cceeecCCCCCCC-----CCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCcc--C--------C--------
Q 044794 4 TQFLLANGLARTP-----PMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRT--C--------S-------- 60 (297)
Q Consensus 4 ~~~~ld~G~~~~~-----~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~--C--------~-------- 60 (297)
..+.||.+|.... ..+.+.++.|+++||+ .+.|+++||++|+|+-++..|.... + .
T Consensus 42 D~i~lD~dw~~~~~~~~~~~~~~~ft~d~~~FPd-p~~mi~~Lh~~G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~ 120 (292)
T cd06595 42 DVLVIDMDWHVTDIPSKYGSGWTGYSWNRKLFPD-PEKLLQDLHDRGLKVTLNLHPADGIRAHEDQYPEMAKALGVDPAT 120 (292)
T ss_pred cEEEEecccccccccccccCCcceeEEChhcCCC-HHHHHHHHHHCCCEEEEEeCCCcccCCCcHHHHHHHHhcCCCccc
Confidence 3577899997642 2457889999999998 9999999999999999999997311 0 0
Q ss_pred -------CCCCCcchh-HHhHHHHHHhhCccEEEeeCCCCC-----CCCh-----HHHHHHHHHHHHHcCCCeEEec---
Q 044794 61 -------NTMPGSLGH-ELQDEGTFAQWGIDYLKYDNCFHD-----GSKP-----QERYTKMSYALLKAGRPILYSI--- 119 (297)
Q Consensus 61 -------~~~pGs~~~-~~~d~~~fa~WGvDylK~D~c~~~-----~~~~-----~~~y~~m~~al~~~gr~i~~s~--- 119 (297)
.++|....+ .+...+.+.+.|||.++.|++-.. +... ...|..+++ ...||++++=
T Consensus 121 ~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~D~~E~~~~~~~~~~~~~~~~~~~y~~~~~---~~~r~f~lsRs~~ 197 (292)
T cd06595 121 EGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWLDWQQGNRTRTPGLDPLWWLNHVHYLDSAR---NGRRPLIFSRWAG 197 (292)
T ss_pred CCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEecCCCCcccccCCcchHHHHHHHHHHHhhc---cCCCcEEEEeecc
Confidence 034655553 455566788999999999987532 1111 112222221 3478988864
Q ss_pred CCcchhhhcccccEEEecCCCCCChhhHHHHHH
Q 044794 120 WGTKIQRNGLVRNAWRTTGDIRDKWESITSIAD 152 (297)
Q Consensus 120 wg~~~~~~~~~~n~wRis~Di~~~W~~i~~~~~ 152 (297)
.|. ..|+-.| ++|+..+|+.+...+.
T Consensus 198 ~G~-----qry~~~W--sGD~~s~W~~l~~~i~ 223 (292)
T cd06595 198 LGS-----HRYPIGF--SGDTIISWASLAFQPY 223 (292)
T ss_pred cCC-----CcCCCcc--CCCcccCHHHHHHHHH
Confidence 222 3566678 8999999998876543
No 21
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=98.35 E-value=1.6e-05 Score=75.26 Aligned_cols=142 Identities=20% Similarity=0.205 Sum_probs=95.0
Q ss_pred cceeecCCCCCCCCCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCccC------------------C-----
Q 044794 4 TQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTC------------------S----- 60 (297)
Q Consensus 4 ~~~~ld~G~~~~~~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C------------------~----- 60 (297)
..+-||.||..........+..|+++||+ .+.|++.||++|+|+-++..|....+ +
T Consensus 46 d~i~ld~~~~~~~~~~~~~f~~d~~~FPd-p~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~ 124 (317)
T cd06599 46 DSFHLSSGYTSIEGGKRYVFNWNKDRFPD-PAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSI 124 (317)
T ss_pred eEEEEeccccccCCCceeeeecCcccCCC-HHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcce
Confidence 35678999975422113458899999998 99999999999999999999974211 0
Q ss_pred -----C-------CCCCcchhHHhHH-HHHHhhCccEEEeeCCCCC-----------CC--C---hHHHHH-----HHHH
Q 044794 61 -----N-------TMPGSLGHELQDE-GTFAQWGIDYLKYDNCFHD-----------GS--K---PQERYT-----KMSY 106 (297)
Q Consensus 61 -----~-------~~pGs~~~~~~d~-~~fa~WGvDylK~D~c~~~-----------~~--~---~~~~y~-----~m~~ 106 (297)
+ ++|.+..+..... +.+.+.|||.+|.|+|-+. +. . ....|. +..+
T Consensus 125 ~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~~~~~~~~~~~~g~~~~~~~~~n~y~~l~~~a~~~ 204 (317)
T cd06599 125 GQFWGGVGSFVDFTNPEGREWWKEGVKEALLDLGIDSTWNDNNEYEIWDDDAVCDGFGKPGTIGELRPVQPNLMARASHE 204 (317)
T ss_pred ecccCCCeEeecCCChHHHHHHHHHHHHHHhcCCCcEEEecCCCCccCCCcceecCCCCccchhhcccchHHHHHHHHHH
Confidence 0 3677788877766 6688999999999998542 00 0 011221 2334
Q ss_pred HHHHc---CCCeEEec---CCcchhhhcccccEEEecCCCCCChhhHHHHHHh
Q 044794 107 ALLKA---GRPILYSI---WGTKIQRNGLVRNAWRTTGDIRDKWESITSIADQ 153 (297)
Q Consensus 107 al~~~---gr~i~~s~---wg~~~~~~~~~~n~wRis~Di~~~W~~i~~~~~~ 153 (297)
++.+. .||++++= .|. ..++-. -++|+..+|+.+..++..
T Consensus 205 ~~~~~~~~~r~f~ltRs~~~G~-----qry~~~--WsGD~~s~W~~L~~~i~~ 250 (317)
T cd06599 205 AQAEHYPNRRPYIVSRSGFAGI-----QRYAQT--WSGDNRTSWKTLRYNIAM 250 (317)
T ss_pred HHHHhCCCCCcEEEEcCCcccc-----cCCcCe--eCCCcccCHHHHHHHHHH
Confidence 55433 46887764 121 234333 478999999988777654
No 22
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=98.24 E-value=5.4e-05 Score=71.73 Aligned_cols=180 Identities=17% Similarity=0.122 Sum_probs=113.7
Q ss_pred cceeecCCCCCCCCCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCccCC-----------------------
Q 044794 4 TQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCS----------------------- 60 (297)
Q Consensus 4 ~~~~ld~G~~~~~~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C~----------------------- 60 (297)
..+.||.+|.. +.+.+..|+++||+ .+.|++.||++|+|+=++..|+..+..
T Consensus 41 d~i~lD~~~~~----~~~~f~~d~~~FPd-p~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~ 115 (317)
T cd06600 41 DVVFLDIHYMD----SYRLFTWDPYRFPE-PKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELF 115 (317)
T ss_pred ceEEEChhhhC----CCCceeechhcCCC-HHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeE
Confidence 45788999975 46789999999998 999999999999999999998743110
Q ss_pred ------C-------CCCCcchhHHhHHHHHH-hhCccEEEeeCCCCCCC-ChHHHHH-----HHHHHHHH---cCCCeEE
Q 044794 61 ------N-------TMPGSLGHELQDEGTFA-QWGIDYLKYDNCFHDGS-KPQERYT-----KMSYALLK---AGRPILY 117 (297)
Q Consensus 61 ------~-------~~pGs~~~~~~d~~~fa-~WGvDylK~D~c~~~~~-~~~~~y~-----~m~~al~~---~gr~i~~ 117 (297)
+ ++|.+..+.....+.+. +.|||.+|.|++-+... +....|. +..+++++ ..||+++
T Consensus 116 ~~~~w~G~~~~~Dftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep~~~~~~hn~y~~~~~~a~~~~~~~~~~~~r~~~~ 195 (317)
T cd06600 116 VGKMWPGTTVYPDFTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEPSDFEKVHNLYGLYEAMATAEGFRTSHPRNRIFIL 195 (317)
T ss_pred EEeecCCCccccCCCChHHHHHHHHHHHHHhhcCCCceEEeeCCCCccHHHhcchhhHHHHHHHHHHHHHhcCCCCceEE
Confidence 0 35677777777776664 99999999999875321 1112232 22344443 3578888
Q ss_pred ec---CCcchhhhcccccEEEecCCCCCChhhHHHHHHhccccccccCCCcCCCCCccccCC-CCCCHHHHHHHHHHhhh
Q 044794 118 SI---WGTKIQRNGLVRNAWRTTGDIRDKWESITSIADQNNVWGRFAGPGRWNDPDMLEVGN-GGMSLEEYRSHFSIWPL 193 (297)
Q Consensus 118 s~---wg~~~~~~~~~~n~wRis~Di~~~W~~i~~~~~~~~~~~~~~~pg~wnD~DmL~vG~-~~lT~~E~rt~~slWa~ 193 (297)
+= .|. ..++- =-++|...+|+.+...+....... ..|-..| =+|+ |. .+-+.+|-..+-.-+++
T Consensus 196 sRs~~~G~-----qry~~--~W~GD~~s~W~~L~~~i~~~l~~g-l~G~p~~-g~Di---GGf~~~~~~EL~~RW~Q~ga 263 (317)
T cd06600 196 TRSGFAGS-----QKYAA--IWTGDNTASWDDLKLSIPLVLGLS-ISGIPFV-GCDI---GGFQGDNSMELLVRWYQLGA 263 (317)
T ss_pred Eecccccc-----CCccc--eECCcccccHHHHHHHHHHHHHHH-hcCCCcc-Cccc---CCCCCCCCHHHHHHHHHHhh
Confidence 75 222 12332 358899999998777665432221 1222222 2231 21 11245677766555556
Q ss_pred cccCceEec
Q 044794 194 MKVSPLLIG 202 (297)
Q Consensus 194 ~~~sPLlig 202 (297)
+. |++-.
T Consensus 264 f~--P~~R~ 270 (317)
T cd06600 264 FF--PFYRS 270 (317)
T ss_pred cC--ceeec
Confidence 55 88864
No 23
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=98.19 E-value=6.8e-05 Score=71.05 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=92.7
Q ss_pred cceeecCCCCCCCCCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCccCC-----------------------
Q 044794 4 TQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCS----------------------- 60 (297)
Q Consensus 4 ~~~~ld~G~~~~~~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C~----------------------- 60 (297)
..+.||..|.... +.+.+..|++|||+ .+.++++||++|+|+-++..|+...+.
T Consensus 41 d~i~lD~~~~~~~--~~~~f~~d~~~FPd-p~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~ 117 (319)
T cd06591 41 DVIVQDWFYWPKQ--GWGEWKFDPERFPD-PKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTM 117 (319)
T ss_pred cEEEEechhhcCC--CceeEEEChhhCCC-HHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeee
Confidence 4577888776432 23589999999998 999999999999999999999743210
Q ss_pred ---C-------CCCCcchhHHhH-HHHHHhhCccEEEeeCCCCCCC--------------C---hHHHHH-----HHHHH
Q 044794 61 ---N-------TMPGSLGHELQD-EGTFAQWGIDYLKYDNCFHDGS--------------K---PQERYT-----KMSYA 107 (297)
Q Consensus 61 ---~-------~~pGs~~~~~~d-~~~fa~WGvDylK~D~c~~~~~--------------~---~~~~y~-----~m~~a 107 (297)
+ ++|.++.+.... .+.+.+.|||.+|.|++-+... + ....|. +..++
T Consensus 118 ~w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~~~~~~~~~~~~~~~~~hN~y~~~~~~~~~e~ 197 (319)
T cd06591 118 QFGGNTRFYDATNPEAREYYWKQLKKNYYDKGVDAWWLDAAEPEYSVYDFGLDNYRYHLGPGLEVGNAYPLMHAKGIYEG 197 (319)
T ss_pred eCCCCccccCCCCHHHHHHHHHHHHHHhhcCCCcEEEecCCCCCccCCcccccCcccCCCCchhhhhhhHHHHHHHHHHH
Confidence 0 356667765443 4557899999999999864210 0 112232 22344
Q ss_pred HHHc---CCCeEEec---CCcchhhhccccc-EEEecCCCCCChhhHHHHHHh
Q 044794 108 LLKA---GRPILYSI---WGTKIQRNGLVRN-AWRTTGDIRDKWESITSIADQ 153 (297)
Q Consensus 108 l~~~---gr~i~~s~---wg~~~~~~~~~~n-~wRis~Di~~~W~~i~~~~~~ 153 (297)
+++. .||++++= .|. ..|+. .| ++|...+|+.+...+..
T Consensus 198 ~~~~~~~~r~f~~sRs~~~Gs-----qry~~~~W--~GD~~s~w~~L~~~i~~ 243 (319)
T cd06591 198 QRAAGDEKRVVILTRSAWAGS-----QRYGALVW--SGDIDSSWETLRRQIAA 243 (319)
T ss_pred HHHhCCCCCceEEEecccccc-----ccccCcee--CCCccccHHHHHHHHHH
Confidence 4443 48888865 122 13432 23 48999999987776654
No 24
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=98.12 E-value=4.5e-05 Score=72.83 Aligned_cols=83 Identities=14% Similarity=0.126 Sum_probs=68.3
Q ss_pred cceeecCCCCCCCCCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCcc----CC------CCCCCcchhHHhH
Q 044794 4 TQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRT----CS------NTMPGSLGHELQD 73 (297)
Q Consensus 4 ~~~~ld~G~~~~~~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~----C~------~~~pGs~~~~~~d 73 (297)
..+.||.+|.. +.+.++.|+++||+ .+.|++.||++|+|..+...|+... +. .++|.+..|....
T Consensus 41 D~i~lDidy~~----~~~~Ft~d~~~FPd-p~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~ 115 (332)
T cd06601 41 DGLHVDVDFQD----NYRTFTTNGGGFPN-PKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQ 115 (332)
T ss_pred ceEEEcCchhc----CCCceeecCCCCCC-HHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHH
Confidence 45789999975 47899999999999 9999999999999999999997542 11 1467778887777
Q ss_pred HHHHHhhCccEEEeeCCC
Q 044794 74 EGTFAQWGIDYLKYDNCF 91 (297)
Q Consensus 74 ~~~fa~WGvDylK~D~c~ 91 (297)
.+.|.+-|||+++.|..-
T Consensus 116 ~~~l~~~Gv~~~W~DmnE 133 (332)
T cd06601 116 YKYLFDIGLEFVWQDMTT 133 (332)
T ss_pred HHHHHhCCCceeecCCCC
Confidence 788888999999999753
No 25
>PRK10658 putative alpha-glucosidase; Provisional
Probab=98.06 E-value=8.4e-05 Score=77.05 Aligned_cols=140 Identities=20% Similarity=0.257 Sum_probs=97.5
Q ss_pred cceeecCCCCCCCCCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCcc--------------C----------
Q 044794 4 TQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRT--------------C---------- 59 (297)
Q Consensus 4 ~~~~ld~G~~~~~~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~--------------C---------- 59 (297)
..+.+|.+|.... ..+.++.|+++||+ .+.|++.||++|+|+-++..|+... |
T Consensus 300 d~i~lD~~w~~~~--~~~~f~wd~~~FPd-p~~mi~~L~~~G~k~~~~i~P~i~~~s~~f~e~~~~gy~vk~~~G~~~~~ 376 (665)
T PRK10658 300 HVFHFDCFWMKEF--QWCDFEWDPRTFPD-PEGMLKRLKAKGLKICVWINPYIAQKSPLFKEGKEKGYLLKRPDGSVWQW 376 (665)
T ss_pred eEEEEchhhhcCC--ceeeeEEChhhCCC-HHHHHHHHHHCCCEEEEeccCCcCCCchHHHHHHHCCeEEECCCCCEeee
Confidence 3578899997542 24589999999998 9999999999999999999997421 0
Q ss_pred -------C---CCCCCcchhHHhHHHHHHhhCccEEEeeCCCC--------CCCCh---HHHHH-----HHHHHHHH-c-
Q 044794 60 -------S---NTMPGSLGHELQDEGTFAQWGIDYLKYDNCFH--------DGSKP---QERYT-----KMSYALLK-A- 111 (297)
Q Consensus 60 -------~---~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~--------~~~~~---~~~y~-----~m~~al~~-~- 111 (297)
. -++|.+..+.....+.+.+.|||.+|.|+... ++..+ ...|. +..+++++ .
T Consensus 377 ~~W~g~~~~~Dftnp~ar~W~~~~~~~l~d~Gvdgfw~D~gE~~p~d~~~~~G~~~~~~hN~Y~~l~~ka~~e~l~~~~~ 456 (665)
T PRK10658 377 DKWQPGMAIVDFTNPDACKWYADKLKGLLDMGVDCFKTDFGERIPTDVVWFDGSDPQKMHNYYTYLYNKTVFDVLKETRG 456 (665)
T ss_pred eecCCCceeecCCCHHHHHHHHHHHHHHHhcCCcEEEecCCceeeccceecCCCcHHHhcchhHHHHHHHHHHHHHHhcC
Confidence 0 04677888888888889999999999998632 22221 11222 23345554 2
Q ss_pred -CCCeEEec---CCcchhhhcccccEEEecCCCCCChhhHHHHHHh
Q 044794 112 -GRPILYSI---WGTKIQRNGLVRNAWRTTGDIRDKWESITSIADQ 153 (297)
Q Consensus 112 -gr~i~~s~---wg~~~~~~~~~~n~wRis~Di~~~W~~i~~~~~~ 153 (297)
.|+++++= .|.+ .++-. =++|+..+|+++...+..
T Consensus 457 ~~r~~i~tRs~~aGsQ-----ry~~~--WsGD~~stw~~l~~si~~ 495 (665)
T PRK10658 457 EGEAVLFARSATVGGQ-----QFPVH--WGGDCYSNYESMAESLRG 495 (665)
T ss_pred CCceEEEEecccCCCC-----CCCCE--ECCCCCCCHHHHHHHHHH
Confidence 46888764 2322 34433 379999999998776653
No 26
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=98.03 E-value=0.00025 Score=67.23 Aligned_cols=183 Identities=18% Similarity=0.258 Sum_probs=110.8
Q ss_pred ceeecCCCCCCCCCCCC-----CeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCcc-CC------------------
Q 044794 5 QFLLANGLARTPPMGHG-----NLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRT-CS------------------ 60 (297)
Q Consensus 5 ~~~ld~G~~~~~~~g~G-----~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~-C~------------------ 60 (297)
.+.|| .|........| .++.|+++||+ .+.|+++||++|+|.=++..|+..+ +.
T Consensus 41 ~i~ld-dw~~~~~~~~g~~~~~~f~~d~~~FPd-p~~mi~~Lh~~G~~~~~~i~P~v~~~~~~~y~~~~~~g~~vk~~~g 118 (317)
T cd06594 41 GLWLQ-DWTGRRETSFGDRLWWNWEWDPERYPG-LDELIEELKARGIRVLTYINPYLADDGPLYYEEAKDAGYLVKDADG 118 (317)
T ss_pred EEEEc-cccCcccccccceeeeeeEEChhhCCC-HHHHHHHHHHCCCEEEEEecCceecCCchhHHHHHHCCeEEECCCC
Confidence 35677 68543211123 47999999998 9999999999999999999997321 00
Q ss_pred ----------------CCCCCcchhHHhHHHHH-HhhCccEEEeeCCCC--------CCCC---hHHHHHH-H----HHH
Q 044794 61 ----------------NTMPGSLGHELQDEGTF-AQWGIDYLKYDNCFH--------DGSK---PQERYTK-M----SYA 107 (297)
Q Consensus 61 ----------------~~~pGs~~~~~~d~~~f-a~WGvDylK~D~c~~--------~~~~---~~~~y~~-m----~~a 107 (297)
-++|.+..+....++.+ .+.|||.+|.|+.-. .+.+ ....|.. | .++
T Consensus 119 ~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~~g~~~~~~hN~y~~~~~~~~~~~ 198 (317)
T cd06594 119 SPYLVDFGEFDCGVLDLTNPAARDWFKQVIKEMLLDLGLSGWMADFGEYLPFDAVLHSGEDAATMHNRYPELWAKLNREA 198 (317)
T ss_pred CeeeeccCCCCceeeecCCHHHHHHHHHHHHHHhhhcCCcEEEecCCCCCCCcceecCCCCHHHHhhHHHHHHHHHHHHH
Confidence 03577778876666654 889999999998643 1111 1223332 2 334
Q ss_pred HHHc---CCCeEEec---CCcchhhhcccccE-EEecCCCCCChh---hHHHHHHhccccccccCCCcCCCCCccccCC-
Q 044794 108 LLKA---GRPILYSI---WGTKIQRNGLVRNA-WRTTGDIRDKWE---SITSIADQNNVWGRFAGPGRWNDPDMLEVGN- 176 (297)
Q Consensus 108 l~~~---gr~i~~s~---wg~~~~~~~~~~n~-wRis~Di~~~W~---~i~~~~~~~~~~~~~~~pg~wnD~DmL~vG~- 176 (297)
+.+. +||++++= .|. ..++.+ | ++|+..+|+ .+...+...... ..+|-..| -+| ||.
T Consensus 199 ~~~~~~~~r~fvltRs~~~Gs-----qry~~~~W--sGD~~s~W~~~~~L~~~i~~~L~~-~lsG~~~~-g~D---IGGF 266 (317)
T cd06594 199 VEEAGKTGDILFFMRSGFTGS-----QKYSTLFW--AGDQMVSWDAHDGLKSVVPGALSS-GLSGYALH-HSD---IGGY 266 (317)
T ss_pred HHHhccCCCeEEEEccccccc-----cccccccc--CCCCCCCCcCcccHHHHHHHHhhc-cccCCCcc-cCc---cCCC
Confidence 4433 57888764 222 245553 5 699999998 466555432221 11221122 122 121
Q ss_pred ----CCCCHHHHHHHHHHhhhcccCceEecc
Q 044794 177 ----GGMSLEEYRSHFSIWPLMKVSPLLIGY 203 (297)
Q Consensus 177 ----~~lT~~E~rt~~slWa~~~~sPLlig~ 203 (297)
.+.+.+|--++-.-++++. |++=..
T Consensus 267 ~~~~~~~~~~EL~~RW~Q~gaF~--P~~R~H 295 (317)
T cd06594 267 TSLNGYVRTEELLLRWAEMAAFT--PVMRTH 295 (317)
T ss_pred cCCCCCCCCHHHHHHHHHHhccc--cceecC
Confidence 1246778877777777665 787654
No 27
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=98.02 E-value=0.0002 Score=68.57 Aligned_cols=136 Identities=17% Similarity=0.121 Sum_probs=91.9
Q ss_pred ceeecCCCCCCCCCCCCCeeecCCCCCCCh--HHHHHHHHHCCCeeeEEecCCCccC---CC------------------
Q 044794 5 QFLLANGLARTPPMGHGNLRAKTSTFPSGI--KALADYVHAKGLRLGIYSDAGFRTC---SN------------------ 61 (297)
Q Consensus 5 ~~~ld~G~~~~~~~g~G~l~~d~~rFP~Gl--k~lad~ih~~Glk~GiY~~~g~~~C---~~------------------ 61 (297)
.+.||.+|... .+.+..|+++||+ . +.|++.||++|+|+=++..|+...- ..
T Consensus 42 ~i~lD~~~~~~----~~~f~~d~~~FPd-p~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~ 116 (339)
T cd06602 42 VQWNDIDYMDR----RRDFTLDPVRFPG-LKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDD 116 (339)
T ss_pred eEEECcccccC----ccceecccccCCC-ccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCC
Confidence 46789999754 6899999999998 6 9999999999999999999974320 00
Q ss_pred ------------------CCCCcchhHHhHHHH-HHhhCccEEEeeCCCCCCC-ChHHHHH-----HHHHHHHH-c-CCC
Q 044794 62 ------------------TMPGSLGHELQDEGT-FAQWGIDYLKYDNCFHDGS-KPQERYT-----KMSYALLK-A-GRP 114 (297)
Q Consensus 62 ------------------~~pGs~~~~~~d~~~-fa~WGvDylK~D~c~~~~~-~~~~~y~-----~m~~al~~-~-gr~ 114 (297)
++|.+..+.....+. +.+.|||.+|.|++-+... .....|. +..+++++ . .|+
T Consensus 117 g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep~~~~~~hN~y~~~~~~~~~~~~~~~~~~r~ 196 (339)
T cd06602 117 GSPYIGKVWPGYTVFPDFLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEPSNFYDVHNLYGLSEAIATYKALQSIPGKRP 196 (339)
T ss_pred CCEEEEEeCCCCCcCcCCCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCCchHhhhcchhhHHHHHHHHHHHHhcCCCCC
Confidence 235556666666665 5669999999999865321 1112222 22334443 3 368
Q ss_pred eEEec---CCcchhhhcccccEEEecCCCCCChhhHHHHHH
Q 044794 115 ILYSI---WGTKIQRNGLVRNAWRTTGDIRDKWESITSIAD 152 (297)
Q Consensus 115 i~~s~---wg~~~~~~~~~~n~wRis~Di~~~W~~i~~~~~ 152 (297)
++++= .|.+ .++-. -++|+..+|+.+..++.
T Consensus 197 ~~~sRs~~~G~q-----ry~~~--w~GD~~s~W~~L~~~i~ 230 (339)
T cd06602 197 FVISRSTFPGSG-----RYAGH--WLGDNASTWEDLRYSII 230 (339)
T ss_pred EEEEecCccccc-----cccee--ECCCccCCHHHHHHHHH
Confidence 88764 2222 23322 57899999998776654
No 28
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=97.80 E-value=0.00099 Score=63.63 Aligned_cols=180 Identities=18% Similarity=0.098 Sum_probs=110.3
Q ss_pred cceeecCCCCCCCCCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCcc-C-----------------------
Q 044794 4 TQFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRT-C----------------------- 59 (297)
Q Consensus 4 ~~~~ld~G~~~~~~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~-C----------------------- 59 (297)
..+.||.+|.. +.+.+..|+++||+ .+.|++.||++|+|+=++..|+... +
T Consensus 41 d~i~lD~~~~~----~~~~f~~d~~~FPd-p~~mi~~L~~~G~k~~~~~~P~v~~~~~~~~y~e~~~~g~~vk~~~g~~~ 115 (339)
T cd06603 41 DVIWLDIEHTD----GKRYFTWDKKKFPD-PEKMQEKLASKGRKLVTIVDPHIKRDDGYYVYKEAKDKGYLVKNSDGGDF 115 (339)
T ss_pred eEEEEChHHhC----CCCceEeCcccCCC-HHHHHHHHHHCCCEEEEEecCceecCCCCHHHHHHHHCCeEEECCCCCEE
Confidence 35678888864 46789999999998 9999999999999999999987421 0
Q ss_pred ---------C---CCCCCcchhHHhHHHHHH---hhCccEEEeeCCCCCC-----------------CCh---HHHHH--
Q 044794 60 ---------S---NTMPGSLGHELQDEGTFA---QWGIDYLKYDNCFHDG-----------------SKP---QERYT-- 102 (297)
Q Consensus 60 ---------~---~~~pGs~~~~~~d~~~fa---~WGvDylK~D~c~~~~-----------------~~~---~~~y~-- 102 (297)
. -++|.+..+.....+.+. +-|+++++.|.+.+.. ... ...|.
T Consensus 116 ~~~~w~g~~~~~Dftnp~a~~ww~~~~~~~~~~~~~g~~g~w~D~~Ep~~f~~~~~~~p~d~~~~~~~~~~~~hN~y~~~ 195 (339)
T cd06603 116 EGWCWPGSSSWPDFLNPEVRDWWASLFSYDKYKGSTENLYIWNDMNEPSVFNGPELTMPKDAIHYGGIEHREVHNIYGLY 195 (339)
T ss_pred EEEECCCCcCCccCCChhHHHHHHHHHHHHhhcccCCCceEEeccCCccccCCCCCcCCCcceecCCCcHHHHhhHhHHH
Confidence 0 035777778777666643 4699999999874310 011 12232
Q ss_pred ---HHHHHHHHc----CCCeEEec---CCcchhhhcccccEEEecCCCCCChhhHHHHHHhccccccccCCCcCCCCCcc
Q 044794 103 ---KMSYALLKA----GRPILYSI---WGTKIQRNGLVRNAWRTTGDIRDKWESITSIADQNNVWGRFAGPGRWNDPDML 172 (297)
Q Consensus 103 ---~m~~al~~~----gr~i~~s~---wg~~~~~~~~~~n~wRis~Di~~~W~~i~~~~~~~~~~~~~~~pg~wnD~DmL 172 (297)
+..+++.+. .||++++= .|. ..++-. -++|+..+|+.+..++...... ...|-..| =+|
T Consensus 196 ~~~a~~e~~~~~~~~~~r~~~~sRs~~~G~-----qry~~~--W~GD~~s~W~~L~~~i~~~L~~-~l~G~~~~-g~D-- 264 (339)
T cd06603 196 MHMATFDGLLKRSEGNKRPFVLTRSFFAGS-----QRYAAI--WTGDNTATWEHLKISIPMLLSL-NICGIPFC-GAD-- 264 (339)
T ss_pred HHHHHHHHHHHhhccCCceEEEEecccccc-----cceeee--eCCCccCCHHHHHHHHHHHHHH-hhcCcccc-CCc--
Confidence 223445432 47877765 222 234432 4789999999887766542221 11221122 122
Q ss_pred ccCC-CCCCHHHHHHHHHHhhhcccCceEec
Q 044794 173 EVGN-GGMSLEEYRSHFSIWPLMKVSPLLIG 202 (297)
Q Consensus 173 ~vG~-~~lT~~E~rt~~slWa~~~~sPLlig 202 (297)
||. .+-++.|-..+-.=++++. |++-.
T Consensus 265 -iGGf~~~~~~EL~~RW~Q~gaf~--P~~R~ 292 (339)
T cd06603 265 -VGGFFGNPDEELLVRWYQAGAFY--PFFRA 292 (339)
T ss_pred -cCCcCCCCCHHHHHHHHHHhhcC--ceeec
Confidence 121 1123456666666666665 88765
No 29
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.75 E-value=0.001 Score=63.78 Aligned_cols=118 Identities=19% Similarity=0.285 Sum_probs=77.6
Q ss_pred CCCCCChHHHHHHHHHCCCeeeEEecCCCccC-C----------------------------------C-------CCCC
Q 044794 28 STFPSGIKALADYVHAKGLRLGIYSDAGFRTC-S----------------------------------N-------TMPG 65 (297)
Q Consensus 28 ~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C-~----------------------------------~-------~~pG 65 (297)
+|||+ .+.|+++||++|+|.-+|..|....+ . + ++|.
T Consensus 82 ~~FPd-p~~mi~~Lh~~G~kv~l~v~P~i~~~~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~ 160 (340)
T cd06597 82 GRWPN-PKGMIDELHEQGVKVLLWQIPIIKLRPHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPE 160 (340)
T ss_pred ccCCC-HHHHHHHHHHCCCEEEEEecCccccccccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHH
Confidence 68887 99999999999999999988864321 0 0 2455
Q ss_pred cchhHHhHHHHHH-hhCccEEEeeCCCCC---------CCCh---HHHH-----HHHHHHHHHcC-CCeEEec--C-Ccc
Q 044794 66 SLGHELQDEGTFA-QWGIDYLKYDNCFHD---------GSKP---QERY-----TKMSYALLKAG-RPILYSI--W-GTK 123 (297)
Q Consensus 66 s~~~~~~d~~~fa-~WGvDylK~D~c~~~---------~~~~---~~~y-----~~m~~al~~~g-r~i~~s~--w-g~~ 123 (297)
+..+.....+.+. +.|||.+|.|+.-.. +... ...| +++.+++++.+ |+++++= | |.
T Consensus 161 a~~Ww~~~~~~~~~~~Gidg~w~D~~E~~~~~~~~~~~g~~~~~~hN~y~~~~~~~~~e~~~~~~~r~filtRs~~~Gs- 239 (340)
T cd06597 161 AAQWWMEKRRYLVDELGIDGFKTDGGEHVWGRDLHFRDGRRGDEMRNTYPNHYVRAYNDFLRRAKKDGVTFSRAGYTGA- 239 (340)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEecCCCccCCCCceecCCCcHHHhhcccHHHHHHHHHHHHHhccCCcEEEEecccCcc-
Confidence 6677767677665 799999999976421 1111 1112 23344555544 7887764 2 22
Q ss_pred hhhhcccccEEEecCCCCCChhhHHHHHHh
Q 044794 124 IQRNGLVRNAWRTTGDIRDKWESITSIADQ 153 (297)
Q Consensus 124 ~~~~~~~~n~wRis~Di~~~W~~i~~~~~~ 153 (297)
..++=.| ++|...+|+.+...+..
T Consensus 240 ----qry~~~W--sGD~~s~W~~L~~~i~~ 263 (340)
T cd06597 240 ----QAHGIFW--AGDENSTFGAFRWSVFA 263 (340)
T ss_pred ----CCCccee--cCCCCCCHHHHHHHHHH
Confidence 2344345 89999999988776654
No 30
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=97.72 E-value=0.00044 Score=72.73 Aligned_cols=137 Identities=20% Similarity=0.294 Sum_probs=98.3
Q ss_pred cceeecCC-CCCCCCCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCcc------------------------
Q 044794 4 TQFLLANG-LARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRT------------------------ 58 (297)
Q Consensus 4 ~~~~ld~G-~~~~~~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~------------------------ 58 (297)
..|.||-. |.+ ..+.++.|+.+||+ -|.|.+++|++|+|+=++..|...+
T Consensus 297 d~~~lD~~~~~~----~~~~F~wd~~~FP~-pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~ 371 (772)
T COG1501 297 DVFVLDIDFWMD----NWGDFTWDPDRFPD-PKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQ 371 (772)
T ss_pred eEEEEeehhhhc----cccceEECcccCCC-HHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEee
Confidence 35778887 765 36789999999999 9999999999999999999996321
Q ss_pred -CCC---------CCCCcchhHHh-HHHHHHhhCccEEEeeCCCCCC---------CC---hHHHH-----HHHHHHHHH
Q 044794 59 -CSN---------TMPGSLGHELQ-DEGTFAQWGIDYLKYDNCFHDG---------SK---PQERY-----TKMSYALLK 110 (297)
Q Consensus 59 -C~~---------~~pGs~~~~~~-d~~~fa~WGvDylK~D~c~~~~---------~~---~~~~y-----~~m~~al~~ 110 (297)
|.+ ++|.++.|... ..+.+.+.|||-++.|++-+.- .. ....| .+..+|+++
T Consensus 372 ~~~w~~~~a~~DFtnp~~r~Ww~~~~~~~l~d~Gv~g~W~D~nEp~~~~~~~~~~g~~~~~~~N~yp~~~~~a~~~~~~~ 451 (772)
T COG1501 372 ADFWPGNSAFPDFTNPDAREWWASDKKKNLLDLGVDGFWNDMNEPEPFDGDGFGNGIDHEEMHNLYPLLYAKAVYEALKE 451 (772)
T ss_pred ecccCCcccccCCCCHHHHHHHHHHHHhHHHhcCccEEEccCCCCccccccccccccCHHHHhcchhHHHHHHHHHHHHh
Confidence 111 46888888885 4466899999999999986521 11 11122 234566665
Q ss_pred c---CCCeEEec---CCcchhhhcccccEEEecCCCCCChhhHHHHHH
Q 044794 111 A---GRPILYSI---WGTKIQRNGLVRNAWRTTGDIRDKWESITSIAD 152 (297)
Q Consensus 111 ~---gr~i~~s~---wg~~~~~~~~~~n~wRis~Di~~~W~~i~~~~~ 152 (297)
. .||++||= -|.+ .++-+| ++|+..+|+++...+-
T Consensus 452 ~~~~~r~~~lsRsg~aG~Q-----~~~~~W--sGD~~s~wd~l~~si~ 492 (772)
T COG1501 452 LGGNERPFILSRSGYAGSQ-----RYAAHW--SGDNRSSWDSLRESIP 492 (772)
T ss_pred hcCCCceEEEEecccccce-----ecccee--CCccccchHHHHhhHH
Confidence 5 58888875 2332 233444 7999999998877654
No 31
>PRK10426 alpha-glucosidase; Provisional
Probab=97.54 E-value=0.0026 Score=65.75 Aligned_cols=138 Identities=14% Similarity=0.199 Sum_probs=90.8
Q ss_pred eeecCCCCCCCCCCCC-----CeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCcc----------------------
Q 044794 6 FLLANGLARTPPMGHG-----NLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRT---------------------- 58 (297)
Q Consensus 6 ~~ld~G~~~~~~~g~G-----~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~---------------------- 58 (297)
+-|| .|+.......| .++.|+++||+ .+.|++.||++|+|+=+|.+|+...
T Consensus 240 i~ld-dw~~~~~~~~g~~~~~~~~~d~~~FPd-p~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~e~~~~gy~vk~~~g~~ 317 (635)
T PRK10426 240 IWAQ-DWSGIRMTSFGKRLMWNWKWDSERYPQ-LDSRIKQLNEEGIQFLGYINPYLASDGDLCEEAAEKGYLAKDADGGD 317 (635)
T ss_pred EEEe-cccccccccccccccccceEChhhCCC-HHHHHHHHHHCCCEEEEEEcCccCCCCHHHHHHHHCCcEEECCCCCE
Confidence 4566 58754333233 46889999998 9999999999999999999997321
Q ss_pred ---------CC---CCCCCcchhHHhHH-HHHHhhCccEEEeeCCCC--------CCCCh---HHHHH-----HHHHHHH
Q 044794 59 ---------CS---NTMPGSLGHELQDE-GTFAQWGIDYLKYDNCFH--------DGSKP---QERYT-----KMSYALL 109 (297)
Q Consensus 59 ---------C~---~~~pGs~~~~~~d~-~~fa~WGvDylK~D~c~~--------~~~~~---~~~y~-----~m~~al~ 109 (297)
|. -++|.+..+....+ +.+.+.|||.+|.|+.-. .+... ...|. +..++++
T Consensus 318 ~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~~~~~~~Gvdg~w~D~~E~~p~d~~~~~g~~~~~~hN~Y~~l~~~~~~e~~~ 397 (635)
T PRK10426 318 YLVEFGEFYAGVVDLTNPEAYEWFKEVIKKNMIGLGCSGWMADFGEYLPTDAYLHNGVSAEIMHNAWPALWAKCNYEALE 397 (635)
T ss_pred EEeEecCCCceeecCCCHHHHHHHHHHHHHHHhhcCCCEEeeeCCCCCCCcceeeCCCCHHHhccHHHHHHHHHHHHHHH
Confidence 11 03577888886665 468899999999998642 11221 22233 2234444
Q ss_pred Hc---CCCeEEec---CCcchhhhccccc-EEEecCCCCCChh---hHHHHHH
Q 044794 110 KA---GRPILYSI---WGTKIQRNGLVRN-AWRTTGDIRDKWE---SITSIAD 152 (297)
Q Consensus 110 ~~---gr~i~~s~---wg~~~~~~~~~~n-~wRis~Di~~~W~---~i~~~~~ 152 (297)
+. +||++++= -|. ..++. .| ++|...+|+ .+...+.
T Consensus 398 ~~~~~~r~f~ltRsg~aGs-----Qry~~~~W--sGD~~ssW~~~d~L~~~I~ 443 (635)
T PRK10426 398 ETGKLGEILFFMRAGYTGS-----QKYSTLFW--AGDQNVDWSLDDGLASVVP 443 (635)
T ss_pred HhcCCCCcEEEEccccCCc-----CCcccccc--CCCCCCcCcChhHHHHHHH
Confidence 43 58888865 122 24554 46 799999996 4555443
No 32
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=97.47 E-value=0.0018 Score=69.46 Aligned_cols=136 Identities=20% Similarity=0.203 Sum_probs=92.7
Q ss_pred ceeecCCCCCCCCCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCccCC------------------------
Q 044794 5 QFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCS------------------------ 60 (297)
Q Consensus 5 ~~~ld~G~~~~~~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C~------------------------ 60 (297)
.+.+|.+|.. |...++.|+++||+ .+.|++.||++|+|.=.+.+|+.....
T Consensus 219 vIwlDidYm~----g~~~FTwD~~rFPd-P~~mv~~Lh~~G~kvv~iidPgI~~d~gY~~y~eg~~~~~fvk~~~G~~y~ 293 (978)
T PLN02763 219 VVWMDIDYMD----GFRCFTFDKERFPD-PKGLADDLHSIGFKAIWMLDPGIKAEEGYFVYDSGCENDVWIQTADGKPFV 293 (978)
T ss_pred EEEEehhhhc----CCCceeECcccCCC-HHHHHHHHHHCCCEEEEEEcCCCccCCCCHHHHhHhhcCeeEECCCCCeeE
Confidence 4678888864 46679999999998 999999999999999777788753210
Q ss_pred ------------CCCCCcchhHHhHHHHHHhhCccEEEeeCCCCCC----------------------C-C---hHHHHH
Q 044794 61 ------------NTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDG----------------------S-K---PQERYT 102 (297)
Q Consensus 61 ------------~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~----------------------~-~---~~~~y~ 102 (297)
.++|.+..|.....+.|.+.|||.++.|++-+.. . . ....|.
T Consensus 294 G~vWpG~~~fpDFTnP~ar~WW~~~~k~l~d~GVDG~W~DmnEPa~f~~~~~t~P~~~~h~g~~~~gG~~~h~~~HNlYg 373 (978)
T PLN02763 294 GEVWPGPCVFPDFTNKKTRSWWANLVKDFVSNGVDGIWNDMNEPAVFKTVTKTMPETNIHRGDEELGGVQNHSHYHNVYG 373 (978)
T ss_pred eeecCCCccccCCCCHHHHHHHHHHHHHHhcCCCcEEEccCCCCccccCCcCCCCccccccCCcccCCccCHHHHhhhhH
Confidence 0256677788778888889999999999865311 0 0 011222
Q ss_pred H-HH----HHHHH---cCCCeEEec---CCcchhhhcccccEEEecCCCCCChhhHHHHHH
Q 044794 103 K-MS----YALLK---AGRPILYSI---WGTKIQRNGLVRNAWRTTGDIRDKWESITSIAD 152 (297)
Q Consensus 103 ~-m~----~al~~---~gr~i~~s~---wg~~~~~~~~~~n~wRis~Di~~~W~~i~~~~~ 152 (297)
. |. +++.+ ..||++++= .|.+ .|+-. -++|...+|+.+...+.
T Consensus 374 ll~akatyEgl~~~~~~kRPFilTRSgfaGsQ-----RYaa~--WtGDn~SsWe~L~~sI~ 427 (978)
T PLN02763 374 MLMARSTYEGMLLANKNKRPFVLTRAGFIGSQ-----RYAAT--WTGDNLSNWEHLHMSIP 427 (978)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEccccCcCC-----CCceE--ECCCccCCHHHHHHHHH
Confidence 1 22 33432 258988865 2322 34433 48999999998766554
No 33
>PLN02982 galactinol-raffinose galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl compounds
Probab=96.99 E-value=0.015 Score=60.75 Aligned_cols=141 Identities=13% Similarity=-0.015 Sum_probs=84.5
Q ss_pred cchhHHhHHHHHHhhCccEEEeeCCCC----C-CC-ChHHHHHHHHHHHHHc------CCCeEEecCCcc--hhh-hccc
Q 044794 66 SLGHELQDEGTFAQWGIDYLKYDNCFH----D-GS-KPQERYTKMSYALLKA------GRPILYSIWGTK--IQR-NGLV 130 (297)
Q Consensus 66 s~~~~~~d~~~fa~WGvDylK~D~c~~----~-~~-~~~~~y~~m~~al~~~------gr~i~~s~wg~~--~~~-~~~~ 130 (297)
.+.+|+.....+++-|||+||+|.-.. . +. ...+..++..+||.++ ++-++ +|.+.. ..| ....
T Consensus 467 ~~~FYd~~hsyLas~GVDgVKVDvQ~~Le~L~~~~ggRv~La~ay~~al~~Sv~r~F~~ng~I-~CM~~~~~~~~~~tk~ 545 (865)
T PLN02982 467 AGDFYDSMHSYLASVGITGVKVDVIHTLEYVCEEYGGRVELAKAYYDGLSESLAKNFNGTGII-ASMQQCNDFFFLGTKQ 545 (865)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEchhhhHHHhhccCCcHHHHHHHHHHHHHHHHHHhCCCCCeE-eecccCchhhhccCCc
Confidence 467788888999999999999997652 1 11 1122233444454433 33344 442322 122 2345
Q ss_pred ccEEEecCCCCC------ChhhH----HHHHHhccccccccCCCcCCCCCccccCCCCCCHHHHHHHHHHhhhcccCceE
Q 044794 131 RNAWRTTGDIRD------KWESI----TSIADQNNVWGRFAGPGRWNDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSPLL 200 (297)
Q Consensus 131 ~n~wRis~Di~~------~W~~i----~~~~~~~~~~~~~~~pg~wnD~DmL~vG~~~lT~~E~rt~~slWa~~~~sPLl 200 (297)
.-+-|+|.|-++ .|... ..++..+.. +-+.+.--|+|=||..-.+ .-.+.|.+.-||.+ .|+.
T Consensus 546 sav~R~SDDF~p~dP~shp~g~~wlq~~Hi~~~AyN-SLl~G~~v~PDWDMFqS~H-----~~A~fHAaaRAIsG-GPIY 618 (865)
T PLN02982 546 ISMGRVGDDFWFQDPNGDPMGVYWLQGVHMIHCAYN-SMWMGQIIQPDWDMFQSDH-----LCAEFHAGSRAICG-GPVY 618 (865)
T ss_pred ceeeeccccccCCCCCcCccccccccceeeeehhhh-hHhhccccccCchhccccC-----chHHHHHHHHhhcC-CCEE
Confidence 567799999764 24221 112211110 1123445799999997643 35689999999999 9999
Q ss_pred eccCCCCCCHhHHh
Q 044794 201 IGYDIRSASGETLK 214 (297)
Q Consensus 201 ig~Dl~~~~~~~~~ 214 (297)
++|-+-+-+-+.+.
T Consensus 619 vSD~pG~Hdf~lLk 632 (865)
T PLN02982 619 VSDSVGGHDFDLLK 632 (865)
T ss_pred EeeCCCCccHHHHH
Confidence 99988765544433
No 34
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=96.57 E-value=0.0085 Score=55.74 Aligned_cols=108 Identities=16% Similarity=0.161 Sum_probs=59.8
Q ss_pred ccceeecCCCCCCCCCC-CCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhC
Q 044794 3 YTQFLLANGLARTPPMG-HGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWG 81 (297)
Q Consensus 3 ~~~~~ld~G~~~~~~~g-~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WG 81 (297)
..++.+|.||...-... ..-..+.+. .-|+.|++|-++||.+.=||...-. .+....-....+..++.+++||
T Consensus 46 ~eYvlvD~GW~~~~~~~~~d~~~~~~~---~dl~elv~Ya~~KgVgi~lw~~~~~---~~~~~~~~~~~~~~f~~~~~~G 119 (273)
T PF10566_consen 46 IEYVLVDAGWYGWEKDDDFDFTKPIPD---FDLPELVDYAKEKGVGIWLWYHSET---GGNVANLEKQLDEAFKLYAKWG 119 (273)
T ss_dssp -SEEEEBTTCCGS--TTT--TT-B-TT-----HHHHHHHHHHTT-EEEEEEECCH---TTBHHHHHCCHHHHHHHHHHCT
T ss_pred CCEEEeccccccccccccccccccCCc---cCHHHHHHHHHHcCCCEEEEEeCCc---chhhHhHHHHHHHHHHHHHHcC
Confidence 35678999997411111 112222222 2499999999999999888876421 1100001112477788999999
Q ss_pred ccEEEeeCCCCCCCChHHHHHHHHHHHHH-cCCCeEEec
Q 044794 82 IDYLKYDNCFHDGSKPQERYTKMSYALLK-AGRPILYSI 119 (297)
Q Consensus 82 vDylK~D~c~~~~~~~~~~y~~m~~al~~-~gr~i~~s~ 119 (297)
|.=||+||...++ +....-..+.+++ +.+.++...
T Consensus 120 v~GvKidF~~~d~---Q~~v~~y~~i~~~AA~~~Lmvnf 155 (273)
T PF10566_consen 120 VKGVKIDFMDRDD---QEMVNWYEDILEDAAEYKLMVNF 155 (273)
T ss_dssp EEEEEEE--SSTS---HHHHHHHHHHHHHHHHTT-EEEE
T ss_pred CCEEeeCcCCCCC---HHHHHHHHHHHHHHHHcCcEEEe
Confidence 9999999998754 3333334444443 335666555
No 35
>cd06596 GH31_CPE1046 CPE1046 is an uncharacterized Clostridium perfringens protein with a glycosyl hydrolase family 31 (GH31) domain. The domain architecture of CPE1046 and its orthologs includes a C-terminal fibronectin type 3 (FN3) domain and a coagulation factor 5/8 type C domain in addition to the GH31 domain. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.51 E-value=0.032 Score=51.49 Aligned_cols=155 Identities=21% Similarity=0.358 Sum_probs=92.9
Q ss_pred CCCCCeeecCCCCCC---ChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCCCCC
Q 044794 18 MGHGNLRAKTSTFPS---GIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDG 94 (297)
Q Consensus 18 ~g~G~l~~d~~rFP~---Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~ 94 (297)
|.-|+++||-. .-. -|+.++||++++|++.|+|+..+- +...+....=|+.++|+|--+-+.
T Consensus 59 ~plgw~lpndg-yg~~y~~l~~~~~~~~~~g~~~glwt~~~l--------------~~~~~ev~~~g~~~~k~Dv~w~g~ 123 (261)
T cd06596 59 MPLGWMLPNDG-YGCGYENLKEVVDYLHANGVETGLWTQSGL--------------RDIAKEVGAAGVRARKTDVAWVGA 123 (261)
T ss_pred CCceeeccCCC-CcchHHHHHHHHHHHHHcCCccccccccch--------------hhhhhhhccCCceEEeccchhhcc
Confidence 33677777742 322 389999999999999999965321 344455667799999999865532
Q ss_pred CC--hHHHHHHHHHHHHH--cCCCeEEec--C-CcchhhhcccccEEEecCCCCCChhhHHHHHHhccccccccCCCcC-
Q 044794 95 SK--PQERYTKMSYALLK--AGRPILYSI--W-GTKIQRNGLVRNAWRTTGDIRDKWESITSIADQNNVWGRFAGPGRW- 166 (297)
Q Consensus 95 ~~--~~~~y~~m~~al~~--~gr~i~~s~--w-g~~~~~~~~~~n~wRis~Di~~~W~~i~~~~~~~~~~~~~~~pg~w- 166 (297)
.+ .....++..+++.+ ..||++++- | |.+ .++-. -++|+..+|+.+...|...... ..+|-..|
T Consensus 124 gy~~~l~~~ka~yeg~~~~~~~RpfiltRsg~aGsQ-----Ry~~~--WsGD~~stWe~Lr~sI~~~L~~-gLsG~p~~G 195 (261)
T cd06596 124 GYSFALNGVKAAADGIESNSNARPFIVTVDGWAGTQ-----RYAGI--WTGDQSGSWEYIRFHIPTYIGS-GLSGQPNTT 195 (261)
T ss_pred chhHHHHHHHHHHHHHHhCCCCCCEEEEecCccccC-----CCCCc--cCCCCcCcHHHHHHHHHHHHHH-HhcCCCcCc
Confidence 22 11222233344443 348999987 2 222 33333 3899999999987666532221 12222222
Q ss_pred CCCCccccCCCCCCHHHHHHHHHHhhhcccCceEec
Q 044794 167 NDPDMLEVGNGGMSLEEYRSHFSIWPLMKVSPLLIG 202 (297)
Q Consensus 167 nD~DmL~vG~~~lT~~E~rt~~slWa~~~~sPLlig 202 (297)
.|.+=. .| + ..|.-++-.-|.++. |++..
T Consensus 196 ~DIGGF-~g--~--~~EL~vRW~Q~gaF~--P~~R~ 224 (261)
T cd06596 196 SDVDGI-FG--G--SPETYTRDLQWKAFT--PVLMT 224 (261)
T ss_pred cccCcC-CC--C--CHHHHHHHHHHHHhh--hhhhh
Confidence 232211 12 2 467888877778777 88854
No 36
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=91.34 E-value=2.4 Score=40.61 Aligned_cols=85 Identities=16% Similarity=0.164 Sum_probs=48.9
Q ss_pred hHHHHHHHHHCCCeeeEEecCCCccCCCCCCCc--------------chhH-----HhHHHHHHhhCccEEEeeCCCCCC
Q 044794 34 IKALADYVHAKGLRLGIYSDAGFRTCSNTMPGS--------------LGHE-----LQDEGTFAQWGIDYLKYDNCFHDG 94 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs--------------~~~~-----~~d~~~fa~WGvDylK~D~c~~~~ 94 (297)
++.|++.|+..|||||+|.++....-..+.... ..|+ .+.-+.+....+|.|=.|......
T Consensus 140 v~El~~A~rk~Glk~G~Y~S~~dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~~ 219 (346)
T PF01120_consen 140 VGELADACRKYGLKFGLYYSPWDWHHPDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPDP 219 (346)
T ss_dssp HHHHHHHHHHTT-EEEEEEESSSCCCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSCC
T ss_pred HHHHHHHHHHcCCeEEEEecchHhcCcccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCcc
Confidence 799999999999999999999743222111110 1122 223333455677777777765431
Q ss_pred CChHHHHHHHHHHHHHcCCCeEEec
Q 044794 95 SKPQERYTKMSYALLKAGRPILYSI 119 (297)
Q Consensus 95 ~~~~~~y~~m~~al~~~gr~i~~s~ 119 (297)
.....+..+.+.+.+.+..++..-
T Consensus 220 -~~~~~~~~~~~~i~~~qp~~ii~~ 243 (346)
T PF01120_consen 220 -DEDWDSAELYNWIRKLQPDVIINN 243 (346)
T ss_dssp -CTHHHHHHHHHHHHHHSTTSEEEC
T ss_pred -ccccCHHHHHHHHHHhCCeEEEec
Confidence 222334555666666666655544
No 37
>KOG2366 consensus Alpha-D-galactosidase (melibiase) [Carbohydrate transport and metabolism]
Probab=90.95 E-value=0.078 Score=51.17 Aligned_cols=141 Identities=18% Similarity=0.114 Sum_probs=98.2
Q ss_pred HHhhCccEEEeeCCCCC-CCChHHHHHHHHHHHHHcCCCeEEecCCcchhhhcccccEEEecCCCCCChhhHHHHHHh--
Q 044794 77 FAQWGIDYLKYDNCFHD-GSKPQERYTKMSYALLKAGRPILYSIWGTKIQRNGLVRNAWRTTGDIRDKWESITSIADQ-- 153 (297)
Q Consensus 77 fa~WGvDylK~D~c~~~-~~~~~~~y~~m~~al~~~gr~i~~s~wg~~~~~~~~~~n~wRis~Di~~~W~~i~~~~~~-- 153 (297)
+.+|++.+.++|+...+ .--.+..|..|.+++.+.|- +..++-||..| |.|..+.+-.+.
T Consensus 37 w~sW~~f~cniDCv~~pd~cIsE~l~~~~ad~mvseG~---------------~~vGY~yi~iD--DCW~e~~Rd~~grL 99 (414)
T KOG2366|consen 37 WNSWERFRCNIDCVFGPDFCISEQLFKEMADAMVSEGL---------------ADVGYEYINID--DCWSEVTRDSDGRL 99 (414)
T ss_pred cccccceeeecccccCCccchhHHHHHHHHHHHHHhHH---------------HhcCcEEEech--hhhhhhccCCcccc
Confidence 78999999999987653 22356788899999876542 23344566666 677766543322
Q ss_pred ccccccc-cCC---CcCCCCCccccCCC---C----CCHHHHHHHHHHhhhcccCceEeccCCCCCCHhHHhccCChhHH
Q 044794 154 NNVWGRF-AGP---GRWNDPDMLEVGNG---G----MSLEEYRSHFSIWPLMKVSPLLIGYDIRSASGETLKILGNKEVI 222 (297)
Q Consensus 154 ~~~~~~~-~~p---g~wnD~DmL~vG~~---~----lT~~E~rt~~slWa~~~~sPLlig~Dl~~~~~~~~~lL~N~eli 222 (297)
...-..+ +|- -.|.+-++|-+|-. | ++..+ +.+..|..+. ++..-|-|+.+++.-.-.++++++..
T Consensus 100 va~~~rFP~Gi~~ladyvHs~GLKlGiYsD~G~~TC~g~PG--S~~~e~~DA~-tFA~WgvDylKlD~C~~~~~~~~~~Y 176 (414)
T KOG2366|consen 100 VADPSRFPSGIKALADYVHSKGLKLGIYSDAGNFTCAGYPG--SLGHEESDAK-TFADWGVDYLKLDGCFNNLITMPEGY 176 (414)
T ss_pred ccChhhcccchhhhhhchhhcCCceeeeeccCchhhccCCc--ccchhhhhhh-hhHhhCCcEEeccccccccccccccc
Confidence 0011111 111 14788888887731 1 23344 7888999999 99999999999999888999999999
Q ss_pred HhccCCCCCCcEEEe
Q 044794 223 VVNQDPLGVPRRKIR 237 (297)
Q Consensus 223 ainQd~lG~~~~~v~ 237 (297)
.++-+.|-..++++.
T Consensus 177 p~ms~aLN~tGrpi~ 191 (414)
T KOG2366|consen 177 PIMSRALNNTGRPIF 191 (414)
T ss_pred hhHHHHHhccCCceE
Confidence 998888877778775
No 38
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=81.80 E-value=6.9 Score=38.23 Aligned_cols=87 Identities=20% Similarity=0.233 Sum_probs=51.1
Q ss_pred hHHHHHHHHHCCCeeeEEecCCCcc---CC---------CCCCCcchhH----HhHHHHHHhhCccEEEeeCCCCCCCCh
Q 044794 34 IKALADYVHAKGLRLGIYSDAGFRT---CS---------NTMPGSLGHE----LQDEGTFAQWGIDYLKYDNCFHDGSKP 97 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g~~~---C~---------~~~pGs~~~~----~~d~~~fa~WGvDylK~D~c~~~~~~~ 97 (297)
++.|++.+++.|||||+|.++-... +. ...|....|. .+..+.+...|-|.|=.|........
T Consensus 130 v~el~~A~rk~Glk~G~Y~S~~DW~~p~y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~~~~- 208 (384)
T smart00812 130 VGELADAVRKRGLKFGLYHSLFDWFNPLYAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEAPDD- 208 (384)
T ss_pred HHHHHHHHHHcCCeEEEEcCHHHhCCCccccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCCccc-
Confidence 8999999999999999999973211 10 0113334454 44455566788888888876542211
Q ss_pred HHHHHHHHHHHHHcCCCe---EEec-CC
Q 044794 98 QERYTKMSYALLKAGRPI---LYSI-WG 121 (297)
Q Consensus 98 ~~~y~~m~~al~~~gr~i---~~s~-wg 121 (297)
.-....+.+-+.+....+ +++- |+
T Consensus 209 ~~~~~~l~~~~~~~qP~~~~vvvn~R~~ 236 (384)
T smart00812 209 YWRSKEFLAWLYNLSPVKDTVVVNDRWG 236 (384)
T ss_pred hhcHHHHHHHHHHhCCCCceEEEEcccc
Confidence 112233444444444443 6655 64
No 39
>PLN02229 alpha-galactosidase
Probab=77.97 E-value=1.4 Score=43.64 Aligned_cols=85 Identities=27% Similarity=0.445 Sum_probs=48.3
Q ss_pred ccceeecCCCCCCCCCCCCCeeecCCCCC-CChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhC
Q 044794 3 YTQFLLANGLARTPPMGHGNLRAKTSTFP-SGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWG 81 (297)
Q Consensus 3 ~~~~~ld~G~~~~~~~g~G~l~~d~~rFP-~Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WG 81 (297)
+...++|||++++||||...+..-...+- .-++..|+.+.+.| +++-|
T Consensus 50 ~~~~~~~ngla~tPpmGWnSWn~~~~~i~E~~i~~~ad~~v~~G-------------------------------l~~~G 98 (427)
T PLN02229 50 YGRLQLNNGLARTPQMGWNSWNFFACNINETVIKETADALVSTG-------------------------------LADLG 98 (427)
T ss_pred hhhhhccCCccCCCCceEEchhhhCcccCHHHHHHHHHHHHHhH-------------------------------HHhCC
Confidence 35567899999999998443321111111 12455555544444 35678
Q ss_pred ccEEEeeCCCCCC-C-------ChHHHHH----HHHHHHHHcCCCe-EEe
Q 044794 82 IDYLKYDNCFHDG-S-------KPQERYT----KMSYALLKAGRPI-LYS 118 (297)
Q Consensus 82 vDylK~D~c~~~~-~-------~~~~~y~----~m~~al~~~gr~i-~~s 118 (297)
++||-+|.|+... . ...++|. .+.+.+-+.|-++ +|+
T Consensus 99 y~yv~iDDgW~~~~rd~~G~l~~d~~rFP~G~k~ladyiH~~GlKfGIy~ 148 (427)
T PLN02229 99 YIHVNIDDCWSNLKRDSKGQLVPDPKTFPSGIKLLADYVHSKGLKLGIYS 148 (427)
T ss_pred CEEEEEcCCcCCCCcCCCCCEEEChhhcCCcHHHHHHHHHHCCCceEEec
Confidence 9999999998632 1 1244554 4455555666554 344
No 40
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=76.64 E-value=12 Score=33.61 Aligned_cols=83 Identities=18% Similarity=0.094 Sum_probs=52.8
Q ss_pred hHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCCCCCCChHHHHHHHHHHHHHcCC
Q 044794 34 IKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAGR 113 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~~~~~~~y~~m~~al~~~gr 113 (297)
++.+++.+|..|||+=|-..+-...... ...-.....-++...+-|.||||.-.-.. .....+....|++++.++..
T Consensus 114 i~~v~~~~~~~gl~vIlE~~l~~~~~~~--~~~~~~I~~a~ria~e~GaD~vKt~tg~~-~~~t~~~~~~~~~~~~~~~~ 190 (236)
T PF01791_consen 114 IAAVVEECHKYGLKVILEPYLRGEEVAD--EKKPDLIARAARIAAELGADFVKTSTGKP-VGATPEDVELMRKAVEAAPV 190 (236)
T ss_dssp HHHHHHHHHTSEEEEEEEECECHHHBSS--TTHHHHHHHHHHHHHHTT-SEEEEE-SSS-SCSHHHHHHHHHHHHHTHSS
T ss_pred HHHHHHHHhcCCcEEEEEEecCchhhcc--cccHHHHHHHHHHHHHhCCCEEEecCCcc-ccccHHHHHHHHHHHHhcCC
Confidence 6777888888888864442221111111 11122345556778899999999998855 44555667789999998888
Q ss_pred C----eEEec
Q 044794 114 P----ILYSI 119 (297)
Q Consensus 114 ~----i~~s~ 119 (297)
| |..|=
T Consensus 191 p~~~~Vk~sG 200 (236)
T PF01791_consen 191 PGKVGVKASG 200 (236)
T ss_dssp TTTSEEEEES
T ss_pred CcceEEEEeC
Confidence 8 88874
No 41
>PLN02692 alpha-galactosidase
Probab=75.75 E-value=2.5 Score=41.73 Aligned_cols=80 Identities=28% Similarity=0.475 Sum_probs=47.6
Q ss_pred ceeecCCCCCCCCCCCCCeeecCCCCC-CChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCcc
Q 044794 5 QFLLANGLARTPPMGHGNLRAKTSTFP-SGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGID 83 (297)
Q Consensus 5 ~~~ld~G~~~~~~~g~G~l~~d~~rFP-~Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvD 83 (297)
...++||++++||||...+-.-...+- .=++..|+.+.+.||| +-|++
T Consensus 45 ~~~~~ngla~tPpmGWnSW~~~~~~i~E~~i~~~ad~~~~~gl~-------------------------------~~Gy~ 93 (412)
T PLN02692 45 RNLLANGLGITPPMGWNSWNHFSCKIDEKMIKETADALVSTGLS-------------------------------KLGYT 93 (412)
T ss_pred hhcccCcCcCCCcceEEchhhhCcccCHHHHHHHHHHHHhccch-------------------------------hcCcE
Confidence 456789999999998443332111111 1256666666666655 56889
Q ss_pred EEEeeCCCCCCC--------ChHHHHH----HHHHHHHHcCCCe
Q 044794 84 YLKYDNCFHDGS--------KPQERYT----KMSYALLKAGRPI 115 (297)
Q Consensus 84 ylK~D~c~~~~~--------~~~~~y~----~m~~al~~~gr~i 115 (297)
||-+|.|+.... ...++|. .+.+.+.+-|-++
T Consensus 94 yv~iDDgW~~~~rd~~G~~~~d~~kFP~G~k~ladyiH~~GLKf 137 (412)
T PLN02692 94 YVNIDDCWAEIARDEKGNLVPKKSTFPSGIKALADYVHSKGLKL 137 (412)
T ss_pred EEEEcCCcCCCCCCCCCCeeeChhhcCCcHHHHHHHHHHCCCce
Confidence 999999986321 1234444 4555555556543
No 42
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=73.52 E-value=8 Score=35.02 Aligned_cols=41 Identities=24% Similarity=0.441 Sum_probs=34.8
Q ss_pred hHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEee
Q 044794 34 IKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYD 88 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D 88 (297)
|+.+++.+|++|+++-+|+.+. .+.+++.+.++|||+|-.|
T Consensus 187 l~~~v~~a~~~Gl~vr~Wtv~~--------------~~~~~~~l~~~GVd~I~TD 227 (228)
T cd08577 187 LKSIIDKAHARGKKVRFWGTPD--------------RPNVWKTLMELGVDLLNTD 227 (228)
T ss_pred HHHHHHHHHHCCCEEEEEccCC--------------hHHHHHHHHHhCCCEEecC
Confidence 7888899999999999998653 2567888999999999766
No 43
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=72.91 E-value=8.6 Score=34.81 Aligned_cols=47 Identities=21% Similarity=0.229 Sum_probs=36.6
Q ss_pred CcchhHHhHHHHHHhhCccEEEeeCCCCCCCChHHHHHHHHHHHH-HcCCCeEEec
Q 044794 65 GSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALL-KAGRPILYSI 119 (297)
Q Consensus 65 Gs~~~~~~d~~~fa~WGvDylK~D~c~~~~~~~~~~y~~m~~al~-~~gr~i~~s~ 119 (297)
|+..-...-++.++++|.|+|=+|+.++. .+|++.++ .+|.|+++|-
T Consensus 162 ~~~~~l~~Aa~~L~~~gadlIvLDCmGYt--------~~~r~~~~~~~g~PVlLsr 209 (221)
T PF07302_consen 162 GDEEELAAAARELAEQGADLIVLDCMGYT--------QEMRDIVQRALGKPVLLSR 209 (221)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEECCCCC--------HHHHHHHHHHhCCCEEeHH
Confidence 44445555678899999999999999753 56777776 5899999874
No 44
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=71.96 E-value=11 Score=34.55 Aligned_cols=64 Identities=17% Similarity=0.284 Sum_probs=38.9
Q ss_pred ChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCCCCCCChHHHHHHHHHHHHHcC
Q 044794 33 GIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAG 112 (297)
Q Consensus 33 Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~~~~~~~y~~m~~al~~~g 112 (297)
-.+.|.+|++++|+.| .++| |....++.+.+.|++++|+=-+.-. ...+-+++.++|
T Consensus 57 ~~~~L~~~~~~~gi~f--~stp--------------fd~~s~d~l~~~~~~~~KIaS~dl~-------n~~lL~~~A~tg 113 (241)
T PF03102_consen 57 QHKELFEYCKELGIDF--FSTP--------------FDEESVDFLEELGVPAYKIASGDLT-------NLPLLEYIAKTG 113 (241)
T ss_dssp HHHHHHHHHHHTT-EE--EEEE---------------SHHHHHHHHHHT-SEEEE-GGGTT--------HHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCEE--EECC--------------CCHHHHHHHHHcCCCEEEecccccc-------CHHHHHHHHHhC
Confidence 4799999999999987 2222 3345666678889999998654321 233455566677
Q ss_pred CCeEEec
Q 044794 113 RPILYSI 119 (297)
Q Consensus 113 r~i~~s~ 119 (297)
.||++|.
T Consensus 114 kPvIlST 120 (241)
T PF03102_consen 114 KPVILST 120 (241)
T ss_dssp S-EEEE-
T ss_pred CcEEEEC
Confidence 7777776
No 45
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=70.24 E-value=6.6 Score=41.71 Aligned_cols=72 Identities=24% Similarity=0.291 Sum_probs=54.5
Q ss_pred CCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCcc-CC-C---------------------------------
Q 044794 17 PMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRT-CS-N--------------------------------- 61 (297)
Q Consensus 17 ~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~-C~-~--------------------------------- 61 (297)
..+.+..+.|+++||. |+.+++.||+.|+|.=+..+|+..+ |. +
T Consensus 337 Md~ykDFTvd~~~fp~-~~~fv~~Lh~~G~kyvliidP~is~~~~y~~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fp 415 (805)
T KOG1065|consen 337 MDGYKDFTVDKVWFPD-LKDFVDDLHARGFKYVLIIDPFISTNSSYGPYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFP 415 (805)
T ss_pred hhcccceeeccccCcc-hHHHHHHHHhCCCeEEEEeCCccccCccchhhhhhhhhceeeecccCchhhhcccCCCccccc
Confidence 3458999999999999 9999999999999999999997532 21 0
Q ss_pred --CCCCcchhHHhHHHHHH-hhCccEEEeeC
Q 044794 62 --TMPGSLGHELQDEGTFA-QWGIDYLKYDN 89 (297)
Q Consensus 62 --~~pGs~~~~~~d~~~fa-~WGvDylK~D~ 89 (297)
+.|.+..+-..-++.|. +-+||.+++|.
T Consensus 416 Dftnp~~~~Ww~~~~~~fh~~vp~dg~wiDm 446 (805)
T KOG1065|consen 416 DFTNPAVVEWWLDELKRFHDEVPFDGFWIDM 446 (805)
T ss_pred ccCCchHHHHHHHHHHhhcccCCccceEEEC
Confidence 12334445444555665 68999999996
No 46
>PLN02808 alpha-galactosidase
Probab=68.99 E-value=4.4 Score=39.70 Aligned_cols=79 Identities=27% Similarity=0.422 Sum_probs=46.8
Q ss_pred eeecCCCCCCCCCCCCCeeecCCCCCC-ChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccE
Q 044794 6 FLLANGLARTPPMGHGNLRAKTSTFPS-GIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDY 84 (297)
Q Consensus 6 ~~ld~G~~~~~~~g~G~l~~d~~rFP~-Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDy 84 (297)
.+++||++++||||..-+..-...+-. =++..|+.+.+.|| ++-|++|
T Consensus 22 ~~~~ngla~tPpmGWnsW~~~~~~i~e~~i~~~a~~mv~~Gl-------------------------------~~~Gy~y 70 (386)
T PLN02808 22 NLLDNGLGLTPQMGWNSWNHFQCNINETLIKQTADAMVSSGL-------------------------------AALGYKY 70 (386)
T ss_pred hcccCcccCCCcceEEchHHHCCCCCHHHHHHHHHHHHHcch-------------------------------HHhCCEE
Confidence 356899999999984333221111111 25666666666665 5678999
Q ss_pred EEeeCCCCCC-C-------ChHHHHH----HHHHHHHHcCCCe
Q 044794 85 LKYDNCFHDG-S-------KPQERYT----KMSYALLKAGRPI 115 (297)
Q Consensus 85 lK~D~c~~~~-~-------~~~~~y~----~m~~al~~~gr~i 115 (297)
|-+|.|+... . ...++|. .+.+.|-+-|-++
T Consensus 71 v~iDd~W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~Glkf 113 (386)
T PLN02808 71 INLDDCWAELKRDSQGNLVPKASTFPSGIKALADYVHSKGLKL 113 (386)
T ss_pred EEEcCCcCCCCcCCCCCEeeChhhcCccHHHHHHHHHHCCCce
Confidence 9999998642 1 1234554 4455555556543
No 47
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=67.38 E-value=12 Score=35.90 Aligned_cols=67 Identities=16% Similarity=0.369 Sum_probs=49.2
Q ss_pred CC-CChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCCCCCCChHHHHHHHHHHH
Q 044794 30 FP-SGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYAL 108 (297)
Q Consensus 30 FP-~Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~~~~~~~y~~m~~al 108 (297)
|| .+++.|.+|++++|+.| -++| +....++.+.+.|++++|+=-+... . ..+-+++
T Consensus 73 l~~e~~~~L~~~~~~~Gi~~--~stp--------------fd~~svd~l~~~~v~~~KIaS~~~~------n-~pLL~~~ 129 (329)
T TIGR03569 73 LSEEDHRELKEYCESKGIEF--LSTP--------------FDLESADFLEDLGVPRFKIPSGEIT------N-APLLKKI 129 (329)
T ss_pred CCHHHHHHHHHHHHHhCCcE--EEEe--------------CCHHHHHHHHhcCCCEEEECccccc------C-HHHHHHH
Confidence 44 47999999999999986 1222 4456677888999999999655432 1 2355667
Q ss_pred HHcCCCeEEec
Q 044794 109 LKAGRPILYSI 119 (297)
Q Consensus 109 ~~~gr~i~~s~ 119 (297)
.++|+||++|.
T Consensus 130 A~~gkPvilSt 140 (329)
T TIGR03569 130 ARFGKPVILST 140 (329)
T ss_pred HhcCCcEEEEC
Confidence 78899999998
No 48
>PLN02899 alpha-galactosidase
Probab=60.80 E-value=7.1 Score=40.42 Aligned_cols=36 Identities=17% Similarity=0.419 Sum_probs=33.4
Q ss_pred CceEEEeccccCCceeeeeeceeEEEEECCCcEEEEEEE
Q 044794 257 APVIVRDLWRYEHSFVSMNKRYGLIAYVDPHACKMYILT 295 (297)
Q Consensus 257 ~~~~v~DlW~~~~~~~g~~~~~~~~~~l~~h~~~~~rl~ 295 (297)
..++.+||| +++++| ..+++++..|+.|||+||.|+
T Consensus 596 ~~c~~~e~w--~~~~~~-~~~~~~~~~v~~hg~~~~~~~ 631 (633)
T PLN02899 596 SSCTGHEVW--SGKDFG-VIKDSISATVEIHGCALFVLH 631 (633)
T ss_pred cccceEEec--cCCCcc-cccccEEEEeecCceEEEEEe
Confidence 368899999 999999 899999999999999999986
No 49
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=60.72 E-value=51 Score=28.54 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=32.7
Q ss_pred hHHHHHHHHHCCCeeeEEe-cCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCC
Q 044794 34 IKALADYVHAKGLRLGIYS-DAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCF 91 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~-~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~ 91 (297)
++.+.++++++|+++|+-. + |.+ ....++...+.|+||||+..-+
T Consensus 91 ~~~~i~~~~~~g~~~~~~~~~----------~~t---~~~~~~~~~~~g~d~v~~~pg~ 136 (206)
T TIGR03128 91 IKGAVKAAKKHGKEVQVDLIN----------VKD---KVKRAKELKELGADYIGVHTGL 136 (206)
T ss_pred HHHHHHHHHHcCCEEEEEecC----------CCC---hHHHHHHHHHcCCCEEEEcCCc
Confidence 6899999999999999842 2 221 2345556677899999996543
No 50
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=60.52 E-value=88 Score=30.13 Aligned_cols=49 Identities=16% Similarity=0.325 Sum_probs=33.2
Q ss_pred hHHhHHHHHH--hhCccEEEeeCCCCC----C-------CChHHHHHHHHHHHHHcCCCeEE
Q 044794 69 HELQDEGTFA--QWGIDYLKYDNCFHD----G-------SKPQERYTKMSYALLKAGRPILY 117 (297)
Q Consensus 69 ~~~~d~~~fa--~WGvDylK~D~c~~~----~-------~~~~~~y~~m~~al~~~gr~i~~ 117 (297)
....-++.|. +.|+|.||+...... + .+..+.-..|.+....++.|+++
T Consensus 185 ~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~P~vv 246 (340)
T PRK12858 185 KVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDLPFIF 246 (340)
T ss_pred HHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCCCEEE
Confidence 3445577788 499999999998542 1 12233345577777778999776
No 51
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=57.04 E-value=43 Score=25.20 Aligned_cols=43 Identities=12% Similarity=0.152 Sum_probs=29.3
Q ss_pred ccCCCCCCceEEEeccccCCce--eee-----------eeceeEEEEECCCcEEEEEEEe
Q 044794 250 EIGIPLPAPVIVRDLWRYEHSF--VSM-----------NKRYGLIAYVDPHACKMYILTP 296 (297)
Q Consensus 250 ~lGl~~~~~~~v~DlW~~~~~~--~g~-----------~~~~~~~~~l~~h~~~~~rl~~ 296 (297)
.+|++. ..+-+++. ...+ .|. ...+.++++|||.++++|+++.
T Consensus 40 ~~~~p~--~g~y~~vl--nsd~~~~~g~~~~~~~~v~~~~~g~~~~~lp~~s~~vl~~~~ 95 (95)
T PF02806_consen 40 RIGVPE--AGRYKEVL--NSDDEEYGGSGKGNSGEVTVDSNGRITVTLPPYSALVLKLKA 95 (95)
T ss_dssp EECSSS--SEEEEETT--TTTCEEEEESSCSETSEEEEETTSEEEEEESTTEEEEEEEEC
T ss_pred EeCCCC--cceeeEEe--CCCccEECCcccccCceEEEeeCCEEEEEECCCEEEEEEEcC
Confidence 567763 45677887 4432 220 1256789999999999999863
No 52
>cd08555 PI-PLCc_GDPD_SF Catalytic domain of phosphoinositide-specific phospholipase C-like phosphodiesterases superfamily. The PI-PLC-like phosphodiesterases superfamily represents the catalytic domains of bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11), glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria, as well as their uncharacterized homologs found in organisms ranging from bacteria and archaea to metazoans, plants, and fungi. PI-PLCs are ubiquitous enzymes hydrolyzing the membrane lipid phosphoinositides to yield two important second messengers, inositol phosphates and diacylglycerol (DAG). GP-GDEs play essential roles in glycerol metabolism and catalyze the hydrolysis of glycerophosph
Probab=55.71 E-value=30 Score=29.50 Aligned_cols=42 Identities=21% Similarity=0.155 Sum_probs=34.6
Q ss_pred hHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeC
Q 044794 34 IKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDN 89 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~ 89 (297)
-+.+++.+|+.|++.-+|+-.- ...+++.+.++|||.|=-|+
T Consensus 138 ~~~~v~~~~~~g~~v~~wtvn~--------------~~~~~~~l~~~Gvd~i~TD~ 179 (179)
T cd08555 138 DTELIASANKLGLLSRIWTVND--------------NNEIINKFLNLGVDGLITDF 179 (179)
T ss_pred CHHHHHHHHHCCCEEEEEeeCC--------------hHHHHHHHHHcCCCEEeCCC
Confidence 4789999999999999997531 36788899999999987664
No 53
>TIGR03586 PseI pseudaminic acid synthase.
Probab=55.42 E-value=30 Score=33.14 Aligned_cols=63 Identities=17% Similarity=0.220 Sum_probs=45.0
Q ss_pred hHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCCCCCCChHHHHHHHHHHHHHcCC
Q 044794 34 IKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAGR 113 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~~~~~~~y~~m~~al~~~gr 113 (297)
.+.|.+|++++|+.| -++| +....++.+.+.|++++|+=-+... . ..+-+++.++|+
T Consensus 79 ~~~L~~~~~~~Gi~~--~stp--------------fd~~svd~l~~~~v~~~KI~S~~~~------n-~~LL~~va~~gk 135 (327)
T TIGR03586 79 HKELFERAKELGLTI--FSSP--------------FDETAVDFLESLDVPAYKIASFEIT------D-LPLIRYVAKTGK 135 (327)
T ss_pred HHHHHHHHHHhCCcE--EEcc--------------CCHHHHHHHHHcCCCEEEECCcccc------C-HHHHHHHHhcCC
Confidence 478999999999986 1111 3334567788999999999665432 1 235566778899
Q ss_pred CeEEec
Q 044794 114 PILYSI 119 (297)
Q Consensus 114 ~i~~s~ 119 (297)
||++|.
T Consensus 136 Pvilst 141 (327)
T TIGR03586 136 PIIMST 141 (327)
T ss_pred cEEEEC
Confidence 999998
No 54
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=53.16 E-value=17 Score=32.43 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=36.8
Q ss_pred ChHHHHHHHHHCCCeeeEEecCCCccCC--------------CCCC--CcchhHHhHHHHHHhhCccEEEee
Q 044794 33 GIKALADYVHAKGLRLGIYSDAGFRTCS--------------NTMP--GSLGHELQDEGTFAQWGIDYLKYD 88 (297)
Q Consensus 33 Glk~lad~ih~~Glk~GiY~~~g~~~C~--------------~~~p--Gs~~~~~~d~~~fa~WGvDylK~D 88 (297)
....++++||++|+|+|+=.-||+..-. .-.| |-|.+.+.........-=.|-++|
T Consensus 100 ~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ 171 (224)
T KOG3111|consen 100 KPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLD 171 (224)
T ss_pred CHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCce
Confidence 4788999999999999999999974210 0123 567777776655443333343443
No 55
>PRK06852 aldolase; Validated
Probab=52.94 E-value=1.3e+02 Score=28.63 Aligned_cols=81 Identities=17% Similarity=0.169 Sum_probs=48.0
Q ss_pred hHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCCCCCCChHHHHHHHHHHHHHcC-
Q 044794 34 IKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAG- 112 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~~~~~~~y~~m~~al~~~g- 112 (297)
+..+++.+|+.||-.=++..|--..-. .+........-++.=++.|-|+||..++...+.... ..|+++...+|
T Consensus 156 l~~v~~ea~~~GlPll~~~yprG~~i~--~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~---e~f~~vv~~~g~ 230 (304)
T PRK06852 156 AAQIIYEAHKHGLIAVLWIYPRGKAVK--DEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPA---ELFKEAVLAAGR 230 (304)
T ss_pred HHHHHHHHHHhCCcEEEEeeccCcccC--CCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCH---HHHHHHHHhCCC
Confidence 566667788888876555544211111 111223455556667899999999999953221112 34556777784
Q ss_pred CCeEEec
Q 044794 113 RPILYSI 119 (297)
Q Consensus 113 r~i~~s~ 119 (297)
.|++++=
T Consensus 231 vpVviaG 237 (304)
T PRK06852 231 TKVVCAG 237 (304)
T ss_pred CcEEEeC
Confidence 5777774
No 56
>cd08564 GDPD_GsGDE_like Glycerophosphodiester phosphodiesterase domain of putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative Galdieria sulphuraria glycerophosphodiester phosphodiesterase (GsGDE, EC 3.1.4.46) and its uncharacterized eukaryotic homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=51.82 E-value=30 Score=31.52 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=34.4
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNC 90 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c 90 (297)
+.+++.+|++|+++.+|+ +++. + -....++.+.++|||.|=-|+.
T Consensus 213 ~~~v~~~~~~Gl~v~~wT-~~~~-~---------n~~~~~~~l~~~GvdgiiTD~p 257 (265)
T cd08564 213 EEFVKKAHENGLKVMTYF-DEPV-N---------DNEEDYKVYLELGVDCICPNDP 257 (265)
T ss_pred HHHHHHHHHcCCEEEEec-CCCC-C---------CCHHHHHHHHHcCCCEEEcCCH
Confidence 578899999999999997 3211 1 1246788899999999888764
No 57
>PRK08227 autoinducer 2 aldolase; Validated
Probab=51.26 E-value=88 Score=29.06 Aligned_cols=71 Identities=14% Similarity=-0.016 Sum_probs=48.1
Q ss_pred hHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCCCCCCChHHHHHHHHHHHHHcCC
Q 044794 34 IKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAGR 113 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~~~~~~~y~~m~~al~~~gr 113 (297)
+..+++.+|+.||-.=++...|... .....+...-++.=++.|-|+||..++. ..|++++..+..
T Consensus 129 l~~v~~ea~~~G~Plla~~prG~~~-----~~~~~~ia~aaRiaaELGADiVK~~y~~----------~~f~~vv~a~~v 193 (264)
T PRK08227 129 IIQLVDAGLRYGMPVMAVTAVGKDM-----VRDARYFSLATRIAAEMGAQIIKTYYVE----------EGFERITAGCPV 193 (264)
T ss_pred HHHHHHHHHHhCCcEEEEecCCCCc-----CchHHHHHHHHHHHHHHcCCEEecCCCH----------HHHHHHHHcCCC
Confidence 6777788999999644433333321 1122256666777789999999999982 456677777778
Q ss_pred CeEEec
Q 044794 114 PILYSI 119 (297)
Q Consensus 114 ~i~~s~ 119 (297)
|++.+=
T Consensus 194 PVviaG 199 (264)
T PRK08227 194 PIVIAG 199 (264)
T ss_pred cEEEeC
Confidence 888663
No 58
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=50.15 E-value=1.4e+02 Score=27.90 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=46.4
Q ss_pred hHHHHHHHHHCCCeeeEEecCCCccC-CCCCCCcchhHHhHHHHHHhhCccEEEeeCCCCCCCChHHHHHHHHHHHHHcC
Q 044794 34 IKALADYVHAKGLRLGIYSDAGFRTC-SNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAG 112 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g~~~C-~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~~~~~~~y~~m~~al~~~g 112 (297)
+..+++.+|..||-+=+|..|-...- ..+ .........-++.=++.|-|+||.++-... ..|+++++.++
T Consensus 132 ~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~-~~d~~~v~~aaRlaaelGADIiK~~ytg~~--------e~F~~vv~~~~ 202 (265)
T COG1830 132 ISQVVEDAHELGMPLVAWAYPRGPAIKDEY-HRDADLVGYAARLAAELGADIIKTKYTGDP--------ESFRRVVAACG 202 (265)
T ss_pred HHHHHHHHHHcCCceEEEEeccCCcccccc-cccHHHHHHHHHHHHHhcCCeEeecCCCCh--------HHHHHHHHhCC
Confidence 45556667777776655555421111 000 122223333344557999999999987643 45668888888
Q ss_pred CCeEEec
Q 044794 113 RPILYSI 119 (297)
Q Consensus 113 r~i~~s~ 119 (297)
-|++.+=
T Consensus 203 vpVviaG 209 (265)
T COG1830 203 VPVVIAG 209 (265)
T ss_pred CCEEEeC
Confidence 8888774
No 59
>cd08607 GDPD_GDE5 Glycerophosphodiester phosphodiesterase domain of putative mammalian glycerophosphodiester phosphodiesterase GDE5 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in putative mammalian GDE5 and similar proteins. Mammalian GDE5 is widely expressed in mammalian tissues, with highest expression in the spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. In addition to C-terminal GDPD domain, all members in this subfamily have a starch binding domain (CBM20) in the N-terminus, which suggests these proteins may play a distinct role in glycerol metabolism.
Probab=49.37 E-value=40 Score=31.06 Aligned_cols=43 Identities=19% Similarity=0.316 Sum_probs=33.5
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNC 90 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c 90 (297)
+.+++.+|++|++...|+-+- -...+++.+.++|||.|--|.+
T Consensus 248 ~~~v~~~~~~Gl~v~~wTv~~-------------n~~~~~~~l~~~GVdgIiTD~~ 290 (290)
T cd08607 248 PSQIELAKSLGLVVFCWGDDL-------------NDPENRKKLKELGVDGLIYDRI 290 (290)
T ss_pred hHHHHHHHHcCCEEEEECCCC-------------CCHHHHHHHHHcCCCEEEecCC
Confidence 578899999999999987410 1135778899999999988864
No 60
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=47.46 E-value=11 Score=36.57 Aligned_cols=51 Identities=25% Similarity=0.329 Sum_probs=34.3
Q ss_pred ChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhH---HhHHHHHHhhCccEEEeeCCCCC
Q 044794 33 GIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHE---LQDEGTFAQWGIDYLKYDNCFHD 93 (297)
Q Consensus 33 Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~---~~d~~~fa~WGvDylK~D~c~~~ 93 (297)
-++.|.+++|+.||+.=+=.+ |.+..+. ..|++.|++||++.|.+|+-...
T Consensus 48 ~~~~l~~~a~~~~~~v~~Dis----------p~~l~~lg~~~~dl~~~~~lGi~~lRlD~Gf~~ 101 (357)
T PF05913_consen 48 RLKELLKLAKELGMEVIADIS----------PKVLKKLGISYDDLSFFKELGIDGLRLDYGFSG 101 (357)
T ss_dssp HHHHHHHHHHHCT-EEEEEE-----------CCHHHTTT-BTTBTHHHHHHT-SEEEESSS-SC
T ss_pred HHHHHHHHHHHCCCEEEEECC----------HHHHHHcCCCHHHHHHHHHcCCCEEEECCCCCH
Confidence 488899999999988533333 4444333 23578899999999999997653
No 61
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=46.91 E-value=37 Score=29.43 Aligned_cols=44 Identities=27% Similarity=0.415 Sum_probs=31.8
Q ss_pred hHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCC
Q 044794 34 IKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCF 91 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~ 91 (297)
++.+...+++.|.+++| + . -| .....++.+.++.+||||+|.-.
T Consensus 134 ~~~~~~~l~~~G~~l~l--d--------~-~g---~~~~~~~~l~~~~~d~iKld~~~ 177 (240)
T cd01948 134 ALATLRRLRALGVRIAL--D--------D-FG---TGYSSLSYLKRLPVDYLKIDRSF 177 (240)
T ss_pred HHHHHHHHHHCCCeEEE--e--------C-CC---CcHhhHHHHHhCCCCEEEECHHH
Confidence 78888889999999876 1 0 11 22344567889999999999754
No 62
>cd08601 GDPD_SaGlpQ_like Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=46.41 E-value=48 Score=29.86 Aligned_cols=41 Identities=24% Similarity=0.362 Sum_probs=33.4
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNC 90 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c 90 (297)
+.+++.+|++|++...|+-- ....++.+.++|||.|=.|+-
T Consensus 208 ~~~v~~~~~~g~~v~~wTvn---------------~~~~~~~l~~~Gvd~IiTD~p 248 (256)
T cd08601 208 PWMVHLIHKKGLLVHPYTVN---------------EKADMIRLINWGVDGMFTNYP 248 (256)
T ss_pred HHHHHHHHHCCCEEEEEecC---------------CHHHHHHHHhcCCCEEEeCCH
Confidence 57899999999999999731 146677888999999988863
No 63
>cd08605 GDPD_GDE5_like_1_plant Glycerophosphodiester phosphodiesterase domain of uncharacterized plant glycerophosphodiester phosphodiesterase-like proteins similar to mammalian GDE5. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized plant glycerophosphodiester phosphodiesterase (GP-PDE)-like proteins. Members in this family show very high sequence homology to mammalian glycerophosphodiester phosphodiesterase GDE5 and are distantly related to plant GP-PDEs.
Probab=46.22 E-value=36 Score=31.25 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=33.0
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDN 89 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~ 89 (297)
+.+++.+|+.|++..+|+.. +. ...+++.+.+||||.|=.|+
T Consensus 240 ~~~v~~~~~~Gl~v~vWTv~----~n---------~~~~~~~l~~~GVdgIiTD~ 281 (282)
T cd08605 240 PTAVSLVKASGLELGTYGKL----NN---------DAEAVERQADLGVDGVIVDH 281 (282)
T ss_pred cHHHHHHHHcCcEEEEeCCC----CC---------CHHHHHHHHHcCCCEEEeCC
Confidence 57899999999999999731 11 13578899999999998876
No 64
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=45.98 E-value=1.3e+02 Score=26.99 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=50.1
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHH-hhCccEEEeeCCCCCCCChHHHHHHHHHHHHHcCC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFA-QWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAGR 113 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa-~WGvDylK~D~c~~~~~~~~~~y~~m~~al~~~gr 113 (297)
+.+..-+++.|+|+| .|....|....++...|.+..++... .+-||||-+-+-.. ........+.++-++.|+
T Consensus 93 ~~~~~~~~~~~~~l~---sPa~~~~~~~~~~g~~Wl~~F~~~~~~~~~~D~iavH~Y~~---~~~~~~~~i~~~~~~~~k 166 (239)
T PF11790_consen 93 KQYMNPLRSPGVKLG---SPAVAFTNGGTPGGLDWLSQFLSACARGCRVDFIAVHWYGG---DADDFKDYIDDLHNRYGK 166 (239)
T ss_pred HHHHhHhhcCCcEEE---CCeecccCCCCCCccHHHHHHHHhcccCCCccEEEEecCCc---CHHHHHHHHHHHHHHhCC
Confidence 344444556788887 44443343213667889998888887 78899888866521 222333344555567899
Q ss_pred CeEEec
Q 044794 114 PILYSI 119 (297)
Q Consensus 114 ~i~~s~ 119 (297)
||.+.-
T Consensus 167 PIWITE 172 (239)
T PF11790_consen 167 PIWITE 172 (239)
T ss_pred CEEEEe
Confidence 998765
No 65
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=44.55 E-value=56 Score=30.15 Aligned_cols=63 Identities=17% Similarity=0.114 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCCCCCCChHHHHHHHHHHHHHcC
Q 044794 33 GIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAG 112 (297)
Q Consensus 33 Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~~~~~~~y~~m~~al~~~g 112 (297)
|++.|.++.++.|+.+ -+.-|....++.+++ .+|++|+=-.... -..+.+++.++|
T Consensus 67 gl~~L~~~~~~~Gl~~----------------~Tev~d~~~v~~~~e-~vdilqIgs~~~~-------n~~LL~~va~tg 122 (250)
T PRK13397 67 GIRYLHEVCQEFGLLS----------------VSEIMSERQLEEAYD-YLDVIQVGARNMQ-------NFEFLKTLSHID 122 (250)
T ss_pred HHHHHHHHHHHcCCCE----------------EEeeCCHHHHHHHHh-cCCEEEECccccc-------CHHHHHHHHccC
Confidence 5666777777777653 112255566777777 6999988543221 145678888899
Q ss_pred CCeEEec
Q 044794 113 RPILYSI 119 (297)
Q Consensus 113 r~i~~s~ 119 (297)
+||+++-
T Consensus 123 kPVilk~ 129 (250)
T PRK13397 123 KPILFKR 129 (250)
T ss_pred CeEEEeC
Confidence 9999997
No 66
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=44.23 E-value=1.2e+02 Score=31.44 Aligned_cols=87 Identities=18% Similarity=0.232 Sum_probs=52.9
Q ss_pred ChHHHHHHHHHCCCeeeE---Ee--c-----CCC-------------------ccCCC----CCCCcchhHHhHHHHHH-
Q 044794 33 GIKALADYVHAKGLRLGI---YS--D-----AGF-------------------RTCSN----TMPGSLGHELQDEGTFA- 78 (297)
Q Consensus 33 Glk~lad~ih~~Glk~Gi---Y~--~-----~g~-------------------~~C~~----~~pGs~~~~~~d~~~fa- 78 (297)
.+|.|++.+|++||+.=+ |. . ++. ..|+. .+|.++.|.-.-++.+.
T Consensus 230 efk~lV~~~H~~Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~ 309 (605)
T TIGR02104 230 ELKQMIQALHENGIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVK 309 (605)
T ss_pred HHHHHHHHHHHCCCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHH
Confidence 499999999999998421 10 0 000 01111 13455567666677765
Q ss_pred hhCccEEEeeCCCCCCCChHHHHHHHHHHHHHcCCC-eEEec-CCc
Q 044794 79 QWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAGRP-ILYSI-WGT 122 (297)
Q Consensus 79 ~WGvDylK~D~c~~~~~~~~~~y~~m~~al~~~gr~-i~~s~-wg~ 122 (297)
+.|||=+.+|....- ..+-...+++++++.... +++.- |..
T Consensus 310 e~~iDGfR~D~~~~~---~~~~~~~~~~~~~~~~p~~~ligE~w~~ 352 (605)
T TIGR02104 310 EYNIDGFRFDLMGIH---DIETMNEIRKALNKIDPNILLYGEGWDL 352 (605)
T ss_pred HcCCCEEEEechhcC---CHHHHHHHHHHHHhhCCCeEEEEccCCC
Confidence 599999999976432 234456777888766655 34454 653
No 67
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=42.87 E-value=59 Score=32.18 Aligned_cols=51 Identities=20% Similarity=0.183 Sum_probs=36.3
Q ss_pred hHHhHHHHHHhhCccEEEeeCCCCCC--CChHHHHHHHHHHH----HHcCCCeEEec
Q 044794 69 HELQDEGTFAQWGIDYLKYDNCFHDG--SKPQERYTKMSYAL----LKAGRPILYSI 119 (297)
Q Consensus 69 ~~~~d~~~fa~WGvDylK~D~c~~~~--~~~~~~y~~m~~al----~~~gr~i~~s~ 119 (297)
-....+..++.=|+||||=|..-.+. ....+|..+..+|+ ++||+..+|+.
T Consensus 161 ~~a~~~~~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~ 217 (412)
T TIGR03326 161 EHAKVAYELWSGGVDLLKDDENLTSQPFNRFEERVEKLYKVRDKVEAETGERKEYLA 217 (412)
T ss_pred HHHHHHHHHHhcCCceeecCCCCCCCCCccHHHHHHHHHHHHHHHHHHhCCcceEEE
Confidence 44556777899999999999765543 23456666555555 67999888876
No 68
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=42.31 E-value=50 Score=32.16 Aligned_cols=51 Identities=25% Similarity=0.342 Sum_probs=36.0
Q ss_pred hHHhHHHHHHhhCccEEEeeCCCCCC--CChHHHHHHHHHHH----HHcCCCeEEec
Q 044794 69 HELQDEGTFAQWGIDYLKYDNCFHDG--SKPQERYTKMSYAL----LKAGRPILYSI 119 (297)
Q Consensus 69 ~~~~d~~~fa~WGvDylK~D~c~~~~--~~~~~~y~~m~~al----~~~gr~i~~s~ 119 (297)
.....+..++.=|+||||=|..-.+. ....+|..+..+|+ ++||+..+|+.
T Consensus 144 ~~a~~~y~~~~GG~D~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~ 200 (366)
T cd08148 144 YTAEAAYAAALGGLDLIKDDETLTDQPFCPLRDRITEVAAALDRVQEETGEKKLYAV 200 (366)
T ss_pred HHHHHHHHHHhCCCCccccccccCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEE
Confidence 44556777888999999999765433 23466766555555 57999888876
No 69
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=42.10 E-value=59 Score=31.57 Aligned_cols=50 Identities=28% Similarity=0.269 Sum_probs=36.1
Q ss_pred HHhHHHHHHhhCccEEEeeCCCCCC--CChHHHHHHHHHHHH----HcCCCeEEec
Q 044794 70 ELQDEGTFAQWGIDYLKYDNCFHDG--SKPQERYTKMSYALL----KAGRPILYSI 119 (297)
Q Consensus 70 ~~~d~~~fa~WGvDylK~D~c~~~~--~~~~~~y~~m~~al~----~~gr~i~~s~ 119 (297)
....+..+++=|||+||.|....+. ....+|.....+|++ +||+..+|..
T Consensus 148 la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~ 203 (367)
T cd08205 148 LAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAP 203 (367)
T ss_pred HHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEE
Confidence 4456777888999999999876543 356788887777774 5678655544
No 70
>cd08575 GDPD_GDE4_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function is not elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests mammalian GDE4 may play some distinct role from other members of mammalian GDEs family. Also included in this subfamily are uncharacterized mammalian glycerophosphodiester phosphodiesterase domain-containing protein 3 (GDPD3) and similar proteins which display very high sequence homology to mammalian GDE4.
Probab=42.05 E-value=48 Score=30.29 Aligned_cols=41 Identities=17% Similarity=0.198 Sum_probs=33.6
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNC 90 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c 90 (297)
+.+++.+|+.|++..+|+- . ...+++.+.+||||.|=-|+-
T Consensus 221 ~~~v~~~~~~G~~v~vWTV------N---------d~~~~~~l~~~GVdgIiTD~P 261 (264)
T cd08575 221 PNLFDHLRKRGIQVYLWVL------N---------DEEDFEEAFDLGADGVMTDSP 261 (264)
T ss_pred HHHHHHHHhcCCcEEEEEE------C---------CHHHHHHHHhcCCCEEEeCCc
Confidence 6789999999999999973 1 135788999999999987763
No 71
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=41.08 E-value=62 Score=29.81 Aligned_cols=63 Identities=21% Similarity=0.246 Sum_probs=40.9
Q ss_pred ChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCCCCCCChHHHHHHHHHHHHHcC
Q 044794 33 GIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAG 112 (297)
Q Consensus 33 Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~~~~~~~y~~m~~al~~~g 112 (297)
|++.|.+++++.|+.+-- --|....++.+++. +|++|+=-... +-..+.+++.++|
T Consensus 77 gl~~l~~~~~~~Gl~~~t----------------~~~d~~~~~~l~~~-~d~lkI~s~~~-------~n~~LL~~~a~~g 132 (260)
T TIGR01361 77 GLKLLRRAADEHGLPVVT----------------EVMDPRDVEIVAEY-ADILQIGARNM-------QNFELLKEVGKQG 132 (260)
T ss_pred HHHHHHHHHHHhCCCEEE----------------eeCChhhHHHHHhh-CCEEEECcccc-------cCHHHHHHHhcCC
Confidence 677777777777776411 11334455555666 78888754321 1234778888999
Q ss_pred CCeEEec
Q 044794 113 RPILYSI 119 (297)
Q Consensus 113 r~i~~s~ 119 (297)
+||+++-
T Consensus 133 kPVilk~ 139 (260)
T TIGR01361 133 KPVLLKR 139 (260)
T ss_pred CcEEEeC
Confidence 9999997
No 72
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=40.55 E-value=59 Score=27.91 Aligned_cols=51 Identities=27% Similarity=0.393 Sum_probs=37.6
Q ss_pred ChHHHHHHHHHCCCeeeEEecCC--CccCCCCC-CCcchhHHhHHHHHHhhCccEEEe
Q 044794 33 GIKALADYVHAKGLRLGIYSDAG--FRTCSNTM-PGSLGHELQDEGTFAQWGIDYLKY 87 (297)
Q Consensus 33 Glk~lad~ih~~Glk~GiY~~~g--~~~C~~~~-pGs~~~~~~d~~~fa~WGvDylK~ 87 (297)
|-+......-.+|-|.=|..-|| +.||..+| || | ...+..|.+-|||-|-+
T Consensus 25 ~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPg---Y-~~~~d~f~~kGVD~I~c 78 (165)
T COG0678 25 GWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPG---Y-LELADEFKAKGVDEIYC 78 (165)
T ss_pred CcccccHHHhcCCCEEEEEeCCCccCCCcccccCcc---H-HHHHHHHHHcCCceEEE
Confidence 44555555566899999999997 68998765 66 3 35677788999997754
No 73
>cd08583 PI-PLCc_GDPD_SF_unchar1 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=39.84 E-value=67 Score=28.59 Aligned_cols=42 Identities=17% Similarity=0.302 Sum_probs=34.1
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCF 91 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~ 91 (297)
+.+++.+|..|+++.+|+- . ...+++.+.+||||.|=-|+..
T Consensus 195 ~~~v~~~~~~Gl~v~vwTV------n---------~~~~~~~l~~~GVdgiiTD~~~ 236 (237)
T cd08583 195 DKLIEKLNKAGIYVYVYTI------N---------DLKDAQEYKKLGVYGIYTDFLT 236 (237)
T ss_pred HHHHHHHHHCCCEEEEEeC------C---------CHHHHHHHHHcCCCEEEeCCCC
Confidence 6888999999999998862 1 1467899999999999888753
No 74
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=39.26 E-value=2e+02 Score=24.85 Aligned_cols=91 Identities=13% Similarity=0.139 Sum_probs=48.6
Q ss_pred CCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCcc---EEEeeCCCCCC-C
Q 044794 20 HGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGID---YLKYDNCFHDG-S 95 (297)
Q Consensus 20 ~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvD---ylK~D~c~~~~-~ 95 (297)
.|.-..||. ++.=.+..++.||++|.|.-.-..++ +.++.--+..++..+.-|+. ++-+|.=.... .
T Consensus 35 eG~~~~D~~-----~~~n~~~A~~aGl~vG~Yhf~~~~~~----~~a~~eA~~f~~~~~~~~~~~~~~~~lD~E~~~~~~ 105 (192)
T cd06522 35 EGTTYRNPY-----AASQIANAKAAGLKVSAYHYAHYTSA----ADAQAEARYFANTAKSLGLSKNTVMVADMEDSSSSG 105 (192)
T ss_pred CCCCccChH-----HHHHHHHHHHCCCeeEEEEEEecCCh----HHHHHHHHHHHHHHHHcCCCCCCceEEEeecCCCcc
Confidence 444445553 45556678899999999996421111 12221122233444545543 34566432221 1
Q ss_pred ChHHHHHHHHHHHHHcC--CCeEEec
Q 044794 96 KPQERYTKMSYALLKAG--RPILYSI 119 (297)
Q Consensus 96 ~~~~~y~~m~~al~~~g--r~i~~s~ 119 (297)
.......++.+.+++.| +||+|+-
T Consensus 106 ~~~~~~~~F~~~v~~~g~~~~~iY~~ 131 (192)
T cd06522 106 NATANVNAFWQTMKAAGYKNTDVYTS 131 (192)
T ss_pred hHHHHHHHHHHHHHHcCCCCcEEEcc
Confidence 22333456777777766 6899985
No 75
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=39.21 E-value=82 Score=29.98 Aligned_cols=51 Identities=24% Similarity=0.273 Sum_probs=32.4
Q ss_pred hHHhHHHHHHhhCccEEEeeCCCCCC--CChHHHHHHHHHHH----HHcCCCeEEec
Q 044794 69 HELQDEGTFAQWGIDYLKYDNCFHDG--SKPQERYTKMSYAL----LKAGRPILYSI 119 (297)
Q Consensus 69 ~~~~d~~~fa~WGvDylK~D~c~~~~--~~~~~~y~~m~~al----~~~gr~i~~s~ 119 (297)
.....+..++.=|+||||=|..-.+. ....+|.....+|+ ++||++-+|..
T Consensus 31 ~~a~~~y~~a~GG~D~IKDDE~l~~q~f~p~~eRv~~~~~a~~~a~~eTG~~~ly~~ 87 (309)
T PF00016_consen 31 ELAELAYEFALGGVDFIKDDENLANQPFCPFEERVPACMEAVDRAEEETGEKKLYAA 87 (309)
T ss_dssp HHHHHHHHHHHTTSSEEEE-TT-SSBTTBEHHHHHHHHHHHHHHHHHHHSS--EEEE
T ss_pred chhhHHHhhhhcccceecccccccCcccccHhHhHHhhhhhhhccccccceecceec
Confidence 34455667788899999999864432 23467777655555 58999877766
No 76
>cd08567 GDPD_SpGDE_like Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) and similar proteins. The prototype of this CD is a putative GP-GDE from Silicibacter pomeroyi (SpGDE). It shows high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=39.04 E-value=56 Score=29.29 Aligned_cols=40 Identities=28% Similarity=0.387 Sum_probs=32.1
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDN 89 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~ 89 (297)
+.+++.+|++|++..+|+-. ....++.+.++|||.|=.|+
T Consensus 221 ~~~i~~~~~~G~~v~vwtvn---------------~~~~~~~~~~~Gvdgi~TD~ 260 (263)
T cd08567 221 KELVDEAHALGLKVVPWTVN---------------DPEDMARLIDLGVDGIITDY 260 (263)
T ss_pred HHHHHHHHHCCCEEEEecCC---------------CHHHHHHHHHcCCCEEEcCC
Confidence 57899999999999988731 12567788999999998775
No 77
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=39.01 E-value=60 Score=32.09 Aligned_cols=50 Identities=24% Similarity=0.370 Sum_probs=33.8
Q ss_pred HHhHHHHHHhhCccEEEeeCCCCCC--CChHHHHHH----HHHHHHHcCCCeEEec
Q 044794 70 ELQDEGTFAQWGIDYLKYDNCFHDG--SKPQERYTK----MSYALLKAGRPILYSI 119 (297)
Q Consensus 70 ~~~d~~~fa~WGvDylK~D~c~~~~--~~~~~~y~~----m~~al~~~gr~i~~s~ 119 (297)
....+..++.=|+||||=|..-.+. ....+|..+ +.+|-++||+..+|+.
T Consensus 161 ~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~ 216 (406)
T cd08207 161 TAALVRQLAAAGIDFIKDDELLANPPYSPLDERVRAVMRVINDHAQRTGRKVMYAF 216 (406)
T ss_pred HHHHHHHHHhCCCCcccccccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEE
Confidence 3445666777899999999765432 233555554 4555568999888876
No 78
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=38.66 E-value=2.5e+02 Score=27.19 Aligned_cols=57 Identities=19% Similarity=0.088 Sum_probs=37.6
Q ss_pred hHHHHHHHHHCCCeeeEEecCCCccCCCCCCCc----chhHHhHHHHHHhhCccEEEeeCCCC
Q 044794 34 IKALADYVHAKGLRLGIYSDAGFRTCSNTMPGS----LGHELQDEGTFAQWGIDYLKYDNCFH 92 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs----~~~~~~d~~~fa~WGvDylK~D~c~~ 92 (297)
+..+++.+|+.||-.=+|..|--..-. .++. -.....-++.=++.|-|+||..++..
T Consensus 181 l~~i~~ea~~~GlPlv~~~YpRG~~i~--~~~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~ 241 (348)
T PRK09250 181 ISEAFEEAHELGLATVLWSYLRNSAFK--KDGDYHTAADLTGQANHLAATIGADIIKQKLPTN 241 (348)
T ss_pred HHHHHHHHHHhCCCEEEEecccCcccC--CcccccccHHHHHHHHHHHHHHcCCEEEecCCCC
Confidence 677778899999987776655211111 1221 23455556667899999999999964
No 79
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=38.57 E-value=79 Score=30.71 Aligned_cols=50 Identities=28% Similarity=0.280 Sum_probs=34.7
Q ss_pred HHhHHHHHHhhCccEEEeeCCCCCC--CChHHHHHHHHHHHH----HcCCCeEEec
Q 044794 70 ELQDEGTFAQWGIDYLKYDNCFHDG--SKPQERYTKMSYALL----KAGRPILYSI 119 (297)
Q Consensus 70 ~~~d~~~fa~WGvDylK~D~c~~~~--~~~~~~y~~m~~al~----~~gr~i~~s~ 119 (297)
....+..++.=|||+||-|..-.+. ....+|.....+|++ +||+...|..
T Consensus 143 ~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~ 198 (364)
T cd08210 143 LAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAP 198 (364)
T ss_pred HHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEE
Confidence 4455667778899999999854432 345778777776664 5678766655
No 80
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=38.47 E-value=35 Score=30.57 Aligned_cols=25 Identities=28% Similarity=0.527 Sum_probs=22.0
Q ss_pred CCCCChHHHHHHHHHCCCeeeEEecC
Q 044794 29 TFPSGIKALADYVHAKGLRLGIYSDA 54 (297)
Q Consensus 29 rFP~Glk~lad~ih~~Glk~GiY~~~ 54 (297)
.|| |+.++.+++|++|++.+||++-
T Consensus 96 lyp-gv~e~L~~Lk~~G~~l~I~Sn~ 120 (220)
T TIGR01691 96 LYP-DVPPALEAWLQLGLRLAVYSSG 120 (220)
T ss_pred cCc-CHHHHHHHHHHCCCEEEEEeCC
Confidence 466 5999999999999999999974
No 81
>cd08579 GDPD_memb_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial glycerophosphodiester phosphodiesterases. In addition to a C-terminal GDPD domain, most members in this family have an N-terminus that functions as a membrane anchor.
Probab=38.18 E-value=65 Score=28.26 Aligned_cols=40 Identities=18% Similarity=0.325 Sum_probs=31.7
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDN 89 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~ 89 (297)
+.+++.+|++|+++.+|+- . ....++.+.+||||.|=-|+
T Consensus 180 ~~~v~~~~~~G~~v~~wtv------n---------~~~~~~~~~~~Gvd~i~TD~ 219 (220)
T cd08579 180 KEFIRQAHQNGKKVYVWTV------N---------DPDDMQRYLAMGVDGIITDY 219 (220)
T ss_pred HHHHHHHHHCCCEEEEEcC------C---------CHHHHHHHHHcCCCEEeCCC
Confidence 5789999999999999962 1 12456888899999987664
No 82
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=37.88 E-value=65 Score=31.66 Aligned_cols=51 Identities=25% Similarity=0.326 Sum_probs=36.1
Q ss_pred hHHhHHHHHHhhCccEEEeeCCCCCC--CChHHHHHHHHHHH----HHcCCCeEEec
Q 044794 69 HELQDEGTFAQWGIDYLKYDNCFHDG--SKPQERYTKMSYAL----LKAGRPILYSI 119 (297)
Q Consensus 69 ~~~~d~~~fa~WGvDylK~D~c~~~~--~~~~~~y~~m~~al----~~~gr~i~~s~ 119 (297)
-....+..++.=|+||||=|..-.+. ....+|..+..+|+ ++||+..+|..
T Consensus 141 ~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~ 197 (391)
T cd08209 141 DLAEQLREQALGGVDLIKDDEILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAV 197 (391)
T ss_pred HHHHHHHHHHhCCCCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEE
Confidence 44555777888899999999764432 23567777666655 57899888776
No 83
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=37.78 E-value=79 Score=26.39 Aligned_cols=40 Identities=23% Similarity=0.395 Sum_probs=32.4
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDN 89 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~ 89 (297)
+.+++.+|+.|+++.+|+-. ....++.+.++|||.|=-|+
T Consensus 150 ~~~i~~~~~~g~~v~~wtvn---------------~~~~~~~~~~~GVdgI~TD~ 189 (189)
T cd08556 150 PELVRAAHAAGLKVYVWTVN---------------DPEDARRLLALGVDGIITDD 189 (189)
T ss_pred HHHHHHHHHcCCEEEEEcCC---------------CHHHHHHHHHCCCCEEecCC
Confidence 78899999999999998742 15677888999999886663
No 84
>cd08206 RuBisCO_large_I_II_III Ribulose bisphosphate carboxylase large chain, Form I,II,III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubico-like proteins (RLP), are missing critical active site residues.
Probab=37.75 E-value=66 Score=31.88 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=35.0
Q ss_pred HHhHHHHHHhhCccEEEeeCCCCCCC--ChHHHHHHHHHHH----HHcCCCeEEec
Q 044794 70 ELQDEGTFAQWGIDYLKYDNCFHDGS--KPQERYTKMSYAL----LKAGRPILYSI 119 (297)
Q Consensus 70 ~~~d~~~fa~WGvDylK~D~c~~~~~--~~~~~y~~m~~al----~~~gr~i~~s~ 119 (297)
....+..++.=|+||||=|..-.+.. ...+|..+..+|+ ++||+..+|+.
T Consensus 150 ~a~~~y~~~~GGiD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~ 205 (414)
T cd08206 150 YARVVYEALRGGLDFVKDDENQNSQPFMRFEDRILFVAEAMDKAEAETGEAKGHYL 205 (414)
T ss_pred HHHHHHHHHhcCCcccccCccCCCCCCCcHHHHHHHHHHHHHHHHHhhCCcceEEe
Confidence 34456667788999999999654432 3466666655555 57999888876
No 85
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=37.53 E-value=64 Score=31.91 Aligned_cols=49 Identities=22% Similarity=0.288 Sum_probs=34.7
Q ss_pred HhHHHHHHhhCccEEEeeCCCCCC--CChHHHHHHHHHHH----HHcCCCeEEec
Q 044794 71 LQDEGTFAQWGIDYLKYDNCFHDG--SKPQERYTKMSYAL----LKAGRPILYSI 119 (297)
Q Consensus 71 ~~d~~~fa~WGvDylK~D~c~~~~--~~~~~~y~~m~~al----~~~gr~i~~s~ 119 (297)
...+..++.=|+||||=|..-.+. ....+|..+..+|+ ++||+..+|..
T Consensus 158 A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~ 212 (407)
T TIGR03332 158 KEQLRQQALGGVDLVKDDEILFETGLAPFEKRITEGKEVLQEVYEQTGHKTLYAV 212 (407)
T ss_pred HHHHHHHhccCcccccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcceEee
Confidence 335667788899999999865543 23467776655555 57899888876
No 86
>PF00563 EAL: EAL domain; InterPro: IPR001633 This domain is found in diverse bacterial signalling proteins. It is called EAL after its conserved residues. The EAL domain is a good candidate for a diguanylate phosphodiesterase function []. The domain contains many conserved acidic residues that could participate in metal binding and might form the phosphodiesterase active site. It often but not always occurs along with IPR000014 from INTERPRO and IPR000160 from INTERPRO domains that are also found in many signalling proteins.; PDB: 3PJU_A 3PJX_A 3PJW_A 3PJT_B 3KZP_B 3U2E_B 3S83_A 2R6O_B 3N3T_B 3GG1_A ....
Probab=37.36 E-value=65 Score=27.76 Aligned_cols=69 Identities=14% Similarity=0.148 Sum_probs=39.6
Q ss_pred HHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCCCCCCC---hHHHHHHHHHHHHHcC
Q 044794 36 ALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSK---PQERYTKMSYALLKAG 112 (297)
Q Consensus 36 ~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~~~---~~~~y~~m~~al~~~g 112 (297)
.....+++.|.+++|--- | ......+.+..+.+||||+|.-...... .......+....++.|
T Consensus 138 ~~l~~l~~~G~~i~ld~~-----------g---~~~~~~~~l~~l~~~~ikld~~~~~~~~~~~~~~~l~~l~~~~~~~~ 203 (236)
T PF00563_consen 138 ENLRRLRSLGFRIALDDF-----------G---SGSSSLEYLASLPPDYIKLDGSLVRDLSDEEAQSLLQSLINLAKSLG 203 (236)
T ss_dssp HHHHHHHHCT-EEEEEEE-----------T---STCGCHHHHHHHCGSEEEEEHHGHTTTTSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCceeEeeec-----------c---CCcchhhhhhhcccccceeecccccccchhhHHHHHHHHHHHhhccc
Confidence 555669999999887321 1 1123455689999999999985432222 1222333444445667
Q ss_pred CCeEEe
Q 044794 113 RPILYS 118 (297)
Q Consensus 113 r~i~~s 118 (297)
-+++..
T Consensus 204 ~~via~ 209 (236)
T PF00563_consen 204 IKVIAE 209 (236)
T ss_dssp -EEEEE
T ss_pred ccccee
Confidence 666654
No 87
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=36.85 E-value=72 Score=28.75 Aligned_cols=41 Identities=24% Similarity=0.478 Sum_probs=33.4
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNC 90 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c 90 (297)
+.+++.+|++|++...|+- . ....++.+.++|||.|=.|.-
T Consensus 199 ~~~v~~~~~~g~~v~~WTv------n---------~~~~~~~l~~~GVdgIiTD~p 239 (249)
T PRK09454 199 EARVAALKAAGLRILVYTV------N---------DPARARELLRWGVDCICTDRI 239 (249)
T ss_pred HHHHHHHHHCCCEEEEEeC------C---------CHHHHHHHHHcCCCEEEeCCh
Confidence 6799999999999999972 1 134678899999999988864
No 88
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=36.62 E-value=75 Score=27.48 Aligned_cols=70 Identities=16% Similarity=0.179 Sum_probs=39.3
Q ss_pred hHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCCCCCCC----hHHHHHHHHHHHH
Q 044794 34 IKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSK----PQERYTKMSYALL 109 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~~~----~~~~y~~m~~al~ 109 (297)
+....+.+++.|.++.|=- -| .....+..+....+||||+|........ .......+.....
T Consensus 135 ~~~~i~~l~~~G~~ialdd-----------fg---~~~~~~~~l~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~ 200 (241)
T smart00052 135 AVATLQRLRELGVRIALDD-----------FG---TGYSSLSYLKRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQ 200 (241)
T ss_pred HHHHHHHHHHCCCEEEEeC-----------CC---CcHHHHHHHHhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHH
Confidence 4466777788887764411 11 1223456778899999999975432221 1222333444444
Q ss_pred HcCCCeEE
Q 044794 110 KAGRPILY 117 (297)
Q Consensus 110 ~~gr~i~~ 117 (297)
..|-+++.
T Consensus 201 ~~~~~via 208 (241)
T smart00052 201 KLGLQVVA 208 (241)
T ss_pred HCCCeEEE
Confidence 55656554
No 89
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=36.51 E-value=72 Score=31.59 Aligned_cols=52 Identities=17% Similarity=0.117 Sum_probs=36.5
Q ss_pred hhHHhHHHHHHhhCccEEEeeCCCCCC--CChHHHHHHHHHHH----HHcCCCeEEec
Q 044794 68 GHELQDEGTFAQWGIDYLKYDNCFHDG--SKPQERYTKMSYAL----LKAGRPILYSI 119 (297)
Q Consensus 68 ~~~~~d~~~fa~WGvDylK~D~c~~~~--~~~~~~y~~m~~al----~~~gr~i~~s~ 119 (297)
..+...+..++.=|+||||=|-.-.+. ....+|.....+|+ ++||+..+|++
T Consensus 147 ~~~a~~~y~~~~GGvD~iKDDE~l~~q~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~ 204 (412)
T cd08213 147 EEHAEVAYEALVGGVDLVKDDENLTSQPFNRFEERAKESLKARDKAEAETGERKAYLA 204 (412)
T ss_pred HHHHHHHHHHHhcCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEE
Confidence 344555777888999999999765543 23466766555554 57899888876
No 90
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=35.66 E-value=74 Score=23.91 Aligned_cols=48 Identities=10% Similarity=0.050 Sum_probs=28.6
Q ss_pred CEEEEEEecccCCCCCCceEEEeccccCCceeeeeeceeEEEEECCCcEEEEEE
Q 044794 241 ALEFPVTWREIGIPLPAPVIVRDLWRYEHSFVSMNKRYGLIAYVDPHACKMYIL 294 (297)
Q Consensus 241 ~~~V~i~~~~lGl~~~~~~~v~DlW~~~~~~~g~~~~~~~~~~l~~h~~~~~rl 294 (297)
+.+++++++...--....-+.+|+- +|+.+. .+. +++|+|.++.|+.|
T Consensus 31 ~~~~~ldl~ry~E~l~~~~~~~dil--tg~~i~--l~~--~l~l~~~~~~ILel 78 (78)
T PF10438_consen 31 DKEQTLDLKRYAEVLGGFTSAKDIL--TGKTID--LSK--NLTLPPKSVLILEL 78 (78)
T ss_dssp SS-EEEEGGGGHHHHTT--EEEETT--T--EEE---SS--EEEE-TTEEEEEEE
T ss_pred CCCeEEcHHHHHHhhCCCcceEECC--CCCEEe--cCC--cEEECCCceEEEEC
Confidence 3456888876531111346899999 999764 333 67899999999875
No 91
>PRK06769 hypothetical protein; Validated
Probab=34.95 E-value=56 Score=27.76 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.3
Q ss_pred CCCChHHHHHHHHHCCCeeeEEecC
Q 044794 30 FPSGIKALADYVHAKGLRLGIYSDA 54 (297)
Q Consensus 30 FP~Glk~lad~ih~~Glk~GiY~~~ 54 (297)
|| |++.+.++||++|.+++|=++.
T Consensus 30 ~p-gv~e~L~~Lk~~G~~l~I~Tn~ 53 (173)
T PRK06769 30 FP-FTKASLQKLKANHIKIFSFTNQ 53 (173)
T ss_pred CC-CHHHHHHHHHHCCCEEEEEECC
Confidence 45 6999999999999999999864
No 92
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=34.85 E-value=1.5e+02 Score=27.47 Aligned_cols=61 Identities=23% Similarity=0.237 Sum_probs=43.9
Q ss_pred CCChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCCCCCCChHHHHHHHHHHHHH
Q 044794 31 PSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLK 110 (297)
Q Consensus 31 P~Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~~~~~~~y~~m~~al~~ 110 (297)
|. ++.+.+.+|+.|.+.+++. |+... ...+.+.+.|+|-+-+|.+. .+.++.+.
T Consensus 208 p~-~k~i~~~i~~~g~~~~lH~------cG~~~--------~~~~~l~~~~~d~~~~d~~~-----------dl~~~~~~ 261 (330)
T cd03465 208 PY-LKKVFDAIKALGGPVIHHN------CGDTA--------PILELMADLGADVFSIDVTV-----------DLAEAKKK 261 (330)
T ss_pred HH-HHHHHHHHHHcCCceEEEE------CCCch--------hHHHHHHHhCCCeEeecccC-----------CHHHHHHH
Confidence 54 8999999999999888886 54331 56788899999999888874 23345555
Q ss_pred cCCCeEE
Q 044794 111 AGRPILY 117 (297)
Q Consensus 111 ~gr~i~~ 117 (297)
.|+.+.+
T Consensus 262 ~g~~~~i 268 (330)
T cd03465 262 VGDKACL 268 (330)
T ss_pred hCCceEE
Confidence 6655443
No 93
>cd08573 GDPD_GDE1 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE1 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE1 (also known as MIR16, membrane interacting protein of RGS16) and their metazoan homologs. GDE1 is widely expressed in mammalian tissues, including the heart, brain, liver, and kidney. It shows sequence homology to bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. GDE1 has been characterized as GPI-GDE (EC 3.1.4.44) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate glycerol phosphate and inositol. It functions as an integral membrane-bound glycoprotein interacting with regulator of G protein signaling protein RGS16, and is modulated by G
Probab=34.42 E-value=75 Score=28.94 Aligned_cols=39 Identities=21% Similarity=0.338 Sum_probs=30.4
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHh-hCccEEEeeC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQ-WGIDYLKYDN 89 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~-WGvDylK~D~ 89 (297)
+.+++.+|+.|++..+|+-- ....++.+.+ |||| |=-|.
T Consensus 218 ~~~v~~~~~~G~~v~vWTVn---------------~~~~~~~l~~~~GVd-iiTD~ 257 (258)
T cd08573 218 SAYVRYWRARGIRVIAWTVN---------------TPTEKQYFAKTLNVP-YITDS 257 (258)
T ss_pred HHHHHHHHHCCCEEEEEecC---------------CHHHHHHHHHHhCCC-eecCC
Confidence 57899999999999998731 1356888999 9999 65554
No 94
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=34.23 E-value=79 Score=29.46 Aligned_cols=40 Identities=13% Similarity=0.113 Sum_probs=32.8
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDN 89 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~ 89 (297)
+.+++.+|+.|++..+|+- . ...+++.+.+||||.|=-|+
T Consensus 251 ~~~v~~~~~~G~~v~vWTV------N---------d~~~~~~l~~~GVdgIiTD~ 290 (300)
T cd08612 251 PSLFRHLQKRGIQVYGWVL------N---------DEEEFERAFELGADGVMTDY 290 (300)
T ss_pred HHHHHHHHHCCCEEEEeec------C---------CHHHHHHHHhcCCCEEEeCC
Confidence 6889999999999999972 1 13678899999999987775
No 95
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=33.87 E-value=2.2e+02 Score=24.56 Aligned_cols=82 Identities=16% Similarity=0.083 Sum_probs=45.1
Q ss_pred hHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCcc--EEEeeCCCC----CC--CChHHHHHHHH
Q 044794 34 IKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGID--YLKYDNCFH----DG--SKPQERYTKMS 105 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvD--ylK~D~c~~----~~--~~~~~~y~~m~ 105 (297)
+..-.+.+++.||+.|+|.-+-..+|. .+ ..-.+..++.++..+.+ +|=+|.=.. .. ....+....+.
T Consensus 41 f~~n~~~A~~aGl~~G~Yhf~~~~~~~---~~-~~Qa~~f~~~~~~~~~~~~~i~lDiE~~~~~~~~~~~~~~~~~~~f~ 116 (196)
T cd06416 41 SVTNIKNARAAGLSTDVYFFPCINCCG---SA-AGQVQTFLQYLKANGIKYGTVWIDIEQNPCQWSSDVASNCQFLQELV 116 (196)
T ss_pred HHHHHHHHHHcCCccceEEEecCCCCC---CH-HHHHHHHHHHHHhCCCceeEEEEEEecCCCCCcCCHHHHHHHHHHHH
Confidence 566677899999999999875221111 11 12233445566666665 333553211 11 11223345666
Q ss_pred HHHHHcCC-CeEEec
Q 044794 106 YALLKAGR-PILYSI 119 (297)
Q Consensus 106 ~al~~~gr-~i~~s~ 119 (297)
..+++.|+ +|+|+-
T Consensus 117 ~~~~~~G~~~~iYt~ 131 (196)
T cd06416 117 SAAKALGLKVGIYSS 131 (196)
T ss_pred HHHHHhCCeEEEEcC
Confidence 77777786 577764
No 96
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=33.67 E-value=52 Score=29.94 Aligned_cols=46 Identities=24% Similarity=0.284 Sum_probs=31.7
Q ss_pred hHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCCCC
Q 044794 34 IKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHD 93 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~ 93 (297)
++.+...+|++|.|+.| +- -|+- .+....+++.-||+||+|-..-.
T Consensus 138 ~~~~l~~L~~~G~~ial--DD---------FGtG---~ssl~~L~~l~~d~iKID~~fi~ 183 (256)
T COG2200 138 ALALLRQLRELGVRIAL--DD---------FGTG---YSSLSYLKRLPPDILKIDRSFVR 183 (256)
T ss_pred HHHHHHHHHHCCCeEEE--EC---------CCCC---HHHHHHHhhCCCCeEEECHHHHh
Confidence 67788899999977544 21 1111 14456678899999999986553
No 97
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=33.38 E-value=83 Score=27.76 Aligned_cols=40 Identities=13% Similarity=0.328 Sum_probs=31.8
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDN 89 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~ 89 (297)
+.+++.+|+.|++..+|+- . ....++.+..+|||.|=.|+
T Consensus 190 ~~~i~~~~~~g~~v~~Wtv------n---------~~~~~~~~~~~GVdgi~TD~ 229 (230)
T cd08563 190 EEVVEELKKRGIPVRLWTV------N---------EEEDMKRLKDLGVDGIITNY 229 (230)
T ss_pred HHHHHHHHHCCCEEEEEec------C---------CHHHHHHHHHCCCCEEeCCC
Confidence 6789999999999999872 1 12667888899999987764
No 98
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=33.05 E-value=1e+02 Score=28.59 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=14.3
Q ss_pred HHHHHHHHHcCCCeEEec
Q 044794 102 TKMSYALLKAGRPILYSI 119 (297)
Q Consensus 102 ~~m~~al~~~gr~i~~s~ 119 (297)
..+.+++.++|+||+++-
T Consensus 124 ~~LL~~~a~~gkPV~lk~ 141 (266)
T PRK13398 124 FELLKEVGKTKKPILLKR 141 (266)
T ss_pred HHHHHHHhcCCCcEEEeC
Confidence 346677788999999997
No 99
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=32.22 E-value=93 Score=27.21 Aligned_cols=40 Identities=18% Similarity=0.392 Sum_probs=32.0
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDN 89 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~ 89 (297)
+.+++.+|++|++...|+-- . ...++.+.++|||.|=.|+
T Consensus 189 ~~~v~~~~~~g~~v~~wTvn-------~--------~~~~~~~~~~gVdgiiTD~ 228 (229)
T cd08562 189 EEQVKALKDAGYKLLVYTVN-------D--------PARAAELLEWGVDAIFTDR 228 (229)
T ss_pred HHHHHHHHHCCCEEEEEeCC-------C--------HHHHHHHHHCCCCEEEcCC
Confidence 57999999999999999631 1 2567888999999987774
No 100
>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed
Probab=32.11 E-value=1e+02 Score=30.52 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=34.9
Q ss_pred hHHhHHHHHHhhCccEEEeeCCCCCC--CChHHHHHHHHHHH----HHcCCCeEEec
Q 044794 69 HELQDEGTFAQWGIDYLKYDNCFHDG--SKPQERYTKMSYAL----LKAGRPILYSI 119 (297)
Q Consensus 69 ~~~~d~~~fa~WGvDylK~D~c~~~~--~~~~~~y~~m~~al----~~~gr~i~~s~ 119 (297)
-+...+..++.=|+||||=|..-.+. ....+|..+..+|+ ++||+..+|++
T Consensus 151 ~~a~~~y~~~~GGvD~IKDDE~l~~q~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~ 207 (407)
T PRK09549 151 YLKEQLRDQALGGVDLVKDDEILFENALTPFEKRIVAGKEVLQEVYETTGHKTLYAV 207 (407)
T ss_pred HHHHHHHHHHhcCCcceecCcCCCCCCCcCHHHHHHHHHHHHHHHHHhhCCcceEEE
Confidence 34445666777899999999764432 23466766555555 57899888876
No 101
>PRK13561 putative diguanylate cyclase; Provisional
Probab=31.70 E-value=63 Score=33.20 Aligned_cols=49 Identities=22% Similarity=0.224 Sum_probs=32.2
Q ss_pred ChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCCC
Q 044794 33 GIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFH 92 (297)
Q Consensus 33 Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~ 92 (297)
....+.+.+++.|.+++|=- -|+...--.....+++..+||||+|-..-
T Consensus 535 ~~~~~~~~l~~~G~~i~ldd-----------fG~g~ssl~~L~~l~~l~~d~lKiD~s~i 583 (651)
T PRK13561 535 AAVAILRPLRNAGVRVALDD-----------FGMGYAGLRQLQHMKSLPIDVLKIDKMFV 583 (651)
T ss_pred HHHHHHHHHHHCCCEEEEEC-----------CCCCcccHHHHhhcCCCCCcEEEECHHHH
Confidence 46778889999999988721 22211111233445678999999997544
No 102
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=30.57 E-value=1e+02 Score=27.29 Aligned_cols=40 Identities=18% Similarity=0.422 Sum_probs=32.2
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDN 89 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~ 89 (297)
..+++.+|++|++.-+|+-. . ...++.+.++|||.|=-|+
T Consensus 191 ~~~v~~~~~~G~~v~~wTvn------~---------~~~~~~l~~~GVdgi~TD~ 230 (233)
T cd08582 191 PAFIKALRDAGLKLNVWTVD------D---------AEDAKRLIELGVDSITTNR 230 (233)
T ss_pred HHHHHHHHHCCCEEEEEeCC------C---------HHHHHHHHHCCCCEEEcCC
Confidence 68899999999999998731 1 2567888899999998775
No 103
>cd08581 GDPD_like_1 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=30.33 E-value=87 Score=27.94 Aligned_cols=39 Identities=21% Similarity=0.214 Sum_probs=30.2
Q ss_pred HHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeC
Q 044794 36 ALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDN 89 (297)
Q Consensus 36 ~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~ 89 (297)
+.+..+|+.|++..+|+-- ....++.+.+||||.|=-|+
T Consensus 190 ~~v~~~~~~G~~v~vWTVn---------------~~~~~~~l~~~GVdgiiTD~ 228 (229)
T cd08581 190 PDTGDLWAGTWKWVIYEVN---------------EPAEALALAARGVALIETDN 228 (229)
T ss_pred hhhHHHHhCCceEEEEEcC---------------CHHHHHHHHHhCCcEEEcCC
Confidence 3467799999999999831 13578899999999986653
No 104
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=30.21 E-value=1.2e+02 Score=27.44 Aligned_cols=36 Identities=14% Similarity=0.216 Sum_probs=26.5
Q ss_pred CeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCc
Q 044794 22 NLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFR 57 (297)
Q Consensus 22 ~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~ 57 (297)
.++...+.-+.-+..+.++||+.|+|+||=..|.+.
T Consensus 85 ~it~H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~ 120 (229)
T PRK09722 85 FITLHPETINGQAFRLIDEIRRAGMKVGLVLNPETP 120 (229)
T ss_pred EEEECccCCcchHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 444444432223778999999999999999999874
No 105
>PF01136 Peptidase_U32: Peptidase family U32 This is family U32 in the peptidase classification. ; InterPro: IPR001539 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belonging to MEROPS peptidase family U32 (clan U-). The type example is collagenase (gene prtC) from Porphyromonas gingivalis (Bacteroides gingivalis) [], which is an enzyme that degrades type I collagen and that seems to require a metal cofactor. The product of PrtC is evolutionary related to a number of uncharacterised proteins with a well conserved region containing two cysteines.; GO: 0008233 peptidase activity, 0006508 proteolysis
Probab=29.52 E-value=73 Score=28.17 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=27.2
Q ss_pred HHHHHHhhCccEEEeeCCCCCCCChHHHHHHHHHHHHH
Q 044794 73 DEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLK 110 (297)
Q Consensus 73 d~~~fa~WGvDylK~D~c~~~~~~~~~~y~~m~~al~~ 110 (297)
.+..+.+-||+++|+|+...+.....+.....++||+.
T Consensus 161 ~l~~L~~~Gv~~~rI~~r~~~~~~~~~iv~~Y~~~l~~ 198 (233)
T PF01136_consen 161 ELPELKDAGVDSFRIDGRTESPEYIEEIVKAYREALDN 198 (233)
T ss_pred HHHHHHHcCCCEEEEcCccCCHHHHHHHHHHHHHHHHH
Confidence 35667788999999999987643444555666777764
No 106
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=29.45 E-value=87 Score=26.48 Aligned_cols=21 Identities=14% Similarity=0.237 Sum_probs=19.3
Q ss_pred ChHHHHHHHHHCCCeeeEEec
Q 044794 33 GIKALADYVHAKGLRLGIYSD 53 (297)
Q Consensus 33 Glk~lad~ih~~Glk~GiY~~ 53 (297)
|+..+.++|+++|++.+|-++
T Consensus 33 gv~e~L~~Lk~~g~~l~I~Tn 53 (181)
T PRK08942 33 GSIEAIARLKQAGYRVVVATN 53 (181)
T ss_pred CHHHHHHHHHHCCCEEEEEeC
Confidence 689999999999999999775
No 107
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=29.36 E-value=1.3e+02 Score=28.88 Aligned_cols=63 Identities=21% Similarity=0.262 Sum_probs=40.1
Q ss_pred ChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCCCCCCChHHHHHHHHHHHHHcC
Q 044794 33 GIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAG 112 (297)
Q Consensus 33 Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~~~~~~~y~~m~~al~~~g 112 (297)
|++-|.+++++.||.+- +.-+....++.+++. +|++|+=--... -..+.+++.++|
T Consensus 145 gL~~L~~~~~~~Gl~v~----------------tev~d~~~~~~l~~~-vd~lqIgAr~~~-------N~~LL~~va~~~ 200 (335)
T PRK08673 145 GLKLLAEAREETGLPIV----------------TEVMDPRDVELVAEY-VDILQIGARNMQ-------NFDLLKEVGKTN 200 (335)
T ss_pred HHHHHHHHHHHcCCcEE----------------EeeCCHHHHHHHHHh-CCeEEECccccc-------CHHHHHHHHcCC
Confidence 56666677776666531 122444566667777 888887543221 134667777899
Q ss_pred CCeEEec
Q 044794 113 RPILYSI 119 (297)
Q Consensus 113 r~i~~s~ 119 (297)
+|++++-
T Consensus 201 kPViLk~ 207 (335)
T PRK08673 201 KPVLLKR 207 (335)
T ss_pred CcEEEeC
Confidence 9999987
No 108
>PRK01076 L-rhamnose isomerase; Provisional
Probab=29.07 E-value=1.5e+02 Score=29.27 Aligned_cols=48 Identities=19% Similarity=0.238 Sum_probs=34.2
Q ss_pred CCCCChHHHHHHHHHCCCeeeEEecCCCccCCCCCCC-cchhHHhHHHHHH
Q 044794 29 TFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPG-SLGHELQDEGTFA 78 (297)
Q Consensus 29 rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pG-s~~~~~~d~~~fa 78 (297)
--|.-+++++++.+++||++++-.+-+.+ ..+.-| |..|.+.-++.|+
T Consensus 110 ~~p~~f~~w~~~Ak~~GlglDfNpn~Fsh--~~~k~G~SLs~pD~~iR~fw 158 (419)
T PRK01076 110 IEPEHFKNWVEWAKENGLGLDFNPTCFSH--PLSADGFTLSHPDPEIRQFW 158 (419)
T ss_pred cCcccHHHHHHHHHHcCCCcCcCcccCCC--ccccCCCcccCCCHHHHHHH
Confidence 35677999999999999999954444433 223346 7778777777765
No 109
>cd08604 GDPD_SHV3_repeat_2 Glycerophosphodiester phosphodiesterase domain repeat 2 of glycerophosphodiester phosphodiesterase-like protein SHV3 and SHV3-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) repeat 2 present in glycerophosphodiester phosphodiesterase (GP-GDE)-like protein SHV3 and SHV3-like proteins (SVLs), which may play important an role in cell wall organization. The prototype of this family is a glycosylphosphatidylinositol (GPI) anchored protein SHV3 encoded by shaven3 (shv3) gene from Arabidopsis thaliana. Members in this family show sequence homology to bacterial GP-GDEs (EC 3.1.4.46) that catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Both, SHV3 and SVLs, have two tandemly repeated GDPD domains whose biochemical functions remain unclear. The residues essential for interactions with the substrates and calcium ions in bacterial GP
Probab=29.07 E-value=1.6e+02 Score=27.49 Aligned_cols=53 Identities=6% Similarity=-0.055 Sum_probs=35.5
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcch--hHHhHHHHHHhhCccEEEeeCC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLG--HELQDEGTFAQWGIDYLKYDNC 90 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~--~~~~d~~~fa~WGvDylK~D~c 90 (297)
+.+++.+|+.||+.-+|+---... .-+..|. .++..++.+.+||||.|=-|+-
T Consensus 240 ~~~v~~a~~~Gl~v~vwTvn~~~~---~~~~~~~~~~~~~~~~~~~~~GVdgIiTD~P 294 (300)
T cd08604 240 TNVVEKLQSANLTVYVEVLRNEFV---SLAFDFFADPTVEINSYVQGAGVDGFITEFP 294 (300)
T ss_pred hHHHHHHHHCCCEEEEEEecCCcc---ccchhccCCHHHHHHHHHHHcCCCEEEecCc
Confidence 379999999999999998532110 0022222 2345567788999999988863
No 110
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=28.99 E-value=51 Score=28.56 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.5
Q ss_pred hHHHHHHHHHCCCeeeEEecCC
Q 044794 34 IKALADYVHAKGLRLGIYSDAG 55 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g 55 (297)
++.+++.+++.|.++|||++..
T Consensus 112 ~~~f~~~~~~~G~~~~iYt~~~ 133 (196)
T cd06416 112 LQELVSAAKALGLKVGIYSSQY 133 (196)
T ss_pred HHHHHHHHHHhCCeEEEEcCcc
Confidence 6788888998999999999874
No 111
>cd08574 GDPD_GDE_2_3_6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2, GDE3, GDE6-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase domain-containing protein subtype 5 (GDE2), subtype 2 (GDE3), subtype 1 (GDE6), and their eukaryotic homologs. Mammalian GDE2, GDE3, and GDE6 show very high sequence similarity to each other and have been classified into the same family. Although they are all transmembrane proteins, based on different pattern of tissue distribution, these enzymes might display diverse cellular functions. Mammalian GDE2 is primarily expressed in mature neurons. It selectively hydrolyzes glycerophosphocholine (GPC) and mainly functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differentiation in the spinal cord. Mammalian GDE3 is specifically expressed in bo
Probab=28.91 E-value=1e+02 Score=27.98 Aligned_cols=39 Identities=8% Similarity=-0.024 Sum_probs=30.8
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEee
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYD 88 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D 88 (297)
+.+++.+|+.|++..+|+-- ....++.+.+||||.|=-|
T Consensus 213 ~~~v~~~~~~g~~v~~WTVn---------------~~~~~~~l~~~GVdgIiTD 251 (252)
T cd08574 213 AQEIREYSKANISVNLYVVN---------------EPWLYSLLWCSGVQSVTTN 251 (252)
T ss_pred HHHHHHHHHCCCEEEEEccC---------------CHHHHHHHHHcCCCEEecC
Confidence 57899999999999988731 1356888999999988554
No 112
>cd08572 GDPD_GDE5_like Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian glycerophosphodiester phosphodiesterase GDE5-like proteins. GDE5 is widely expressed in mammalian tissues, with highest expression in spinal chord. Although its biological function remains unclear, mammalian GDE5 shows higher sequence homology to fungal and plant glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46) than to other bacterial and mammalian GP-GDEs. It may also hydrolyze glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=28.83 E-value=1.2e+02 Score=28.14 Aligned_cols=42 Identities=29% Similarity=0.412 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDN 89 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~ 89 (297)
+.+++.+|+.|++.-.|+-.. -...+++.+.++|||-|--|.
T Consensus 251 ~~~v~~~~~~Gl~v~~wTv~~-------------n~~~~~~~l~~~GVdgIiTD~ 292 (293)
T cd08572 251 PSLISLVKALGLVLFTYGDDN-------------NDPENVKKQKELGVDGVIYDR 292 (293)
T ss_pred cHHHHHHHHcCcEEEEECCCC-------------CCHHHHHHHHHcCCCEEEecC
Confidence 578888999999988887511 114578899999999998885
No 113
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=28.67 E-value=42 Score=23.27 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=15.1
Q ss_pred EEEeccccCCceeeeeeceeEEEEECCCcEEEEE
Q 044794 260 IVRDLWRYEHSFVSMNKRYGLIAYVDPHACKMYI 293 (297)
Q Consensus 260 ~v~DlW~~~~~~~g~~~~~~~~~~l~~h~~~~~r 293 (297)
..+||. +++.. .+. ++|+|++++|++
T Consensus 32 ~~~dll--~g~~~----~~~--~~L~p~~v~Vl~ 57 (58)
T PF08533_consen 32 SYTDLL--TGETV----SGG--LTLPPYGVRVLK 57 (58)
T ss_dssp T-EEEE--S-------------SEE-TTEEEEEE
T ss_pred Cceecc--cCcce----eeE--EEECCCEEEEEE
Confidence 468999 87643 233 889999999987
No 114
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=28.60 E-value=2e+02 Score=25.95 Aligned_cols=65 Identities=23% Similarity=0.319 Sum_probs=43.8
Q ss_pred HCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCCCCC-----CChHHHHHHHHHHHHHcCCCeE
Q 044794 43 AKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDG-----SKPQERYTKMSYALLKAGRPIL 116 (297)
Q Consensus 43 ~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~-----~~~~~~y~~m~~al~~~gr~i~ 116 (297)
||-++||||--. .++.+.. +..++..++-|||+|-+....... ....+....++++++++|-.+.
T Consensus 5 ~~~~~~~~~~~~--------~~~~~~~-~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 5 SKQIPLGIYEKA--------LPAGECW-LEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVN 74 (283)
T ss_pred cccccceeeccc--------CCCCCCH-HHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCcee
Confidence 678899999753 1333333 356778899999999997533211 1134567788899999988753
No 115
>cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=28.45 E-value=1.1e+02 Score=30.53 Aligned_cols=51 Identities=22% Similarity=0.128 Sum_probs=35.0
Q ss_pred hHHhHHHHHHhhCccEEEeeCCCCCC--CChHHHHHHHHHHH----HHcCCCeEEec
Q 044794 69 HELQDEGTFAQWGIDYLKYDNCFHDG--SKPQERYTKMSYAL----LKAGRPILYSI 119 (297)
Q Consensus 69 ~~~~d~~~fa~WGvDylK~D~c~~~~--~~~~~~y~~m~~al----~~~gr~i~~s~ 119 (297)
-+...+..++.=|+||||=|-.-.+. ....+|.....+|+ ++||+..+|++
T Consensus 177 ~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~eRv~~~~~ai~~a~~eTG~~~~ya~ 233 (424)
T cd08208 177 EFAELGYQSWLGGLDIAKDDEMLADVDWCPLEERAALLGKARRRAEAETGVPKIYLA 233 (424)
T ss_pred HHHHHHHHHHcCCcccccccccccCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEE
Confidence 34455667888899999999754432 23467777555554 57899877776
No 116
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=28.23 E-value=1.1e+02 Score=27.26 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=33.3
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDN 89 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~ 89 (297)
+.+++++|+.|++..+|+- . . ..+++.+.+||||.|=.|+
T Consensus 202 ~~~v~~~~~~G~~v~vWTV------N-~--------~~~~~~l~~~gVdgIiTD~ 241 (249)
T cd08561 202 PRFVRAAHAAGLEVHVWTV------N-D--------PAEMRRLLDLGVDGIITDR 241 (249)
T ss_pred HHHHHHHHHCCCEEEEEec------C-C--------HHHHHHHHhcCCCEEEcCC
Confidence 6899999999999999983 1 1 3678889999999998775
No 117
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=28.11 E-value=77 Score=30.08 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=30.0
Q ss_pred CCCeeecCCCC---CCChHHHHHHHHHCCCeeeEEecCC
Q 044794 20 HGNLRAKTSTF---PSGIKALADYVHAKGLRLGIYSDAG 55 (297)
Q Consensus 20 ~G~l~~d~~rF---P~Glk~lad~ih~~Glk~GiY~~~g 55 (297)
+|.|+.++..= ..|+..+.++++++|.++||.++.+
T Consensus 134 DgTLi~~~~~v~irdPgV~EaL~~LkekGikLaIaTS~~ 172 (301)
T TIGR01684 134 DSTLITDEEPVRIRDPRIYDSLTELKKRGCILVLWSYGD 172 (301)
T ss_pred CCCCcCCCCccccCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 78888887642 2579999999999999999999754
No 118
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=27.95 E-value=3.3e+02 Score=25.42 Aligned_cols=86 Identities=16% Similarity=0.064 Sum_probs=52.6
Q ss_pred CChHHHHHHHHHCCCeeeEEecCCCccC---CCCCCCcchhHHhHHHHHHhhCccEEEeeCCCCCCC----ChHHHHHHH
Q 044794 32 SGIKALADYVHAKGLRLGIYSDAGFRTC---SNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGS----KPQERYTKM 104 (297)
Q Consensus 32 ~Glk~lad~ih~~Glk~GiY~~~g~~~C---~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~~----~~~~~y~~m 104 (297)
..++.-+.++|++|+|.=|=. |-..- .........+.+...+.+.++|+|=|=+|+=+.... ...+.+..+
T Consensus 60 ~~~~~~i~~~q~~G~KVllSi--GG~~~~~~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~ 137 (312)
T cd02871 60 AEFKADIKALQAKGKKVLISI--GGANGHVDLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATPVITNLISA 137 (312)
T ss_pred HHHHHHHHHHHHCCCEEEEEE--eCCCCccccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHHHHHHHHHH
Confidence 457888889999999853322 21110 001112234556667778899999999999765322 234556655
Q ss_pred HHHHH-HcCCCeEEec
Q 044794 105 SYALL-KAGRPILYSI 119 (297)
Q Consensus 105 ~~al~-~~gr~i~~s~ 119 (297)
-+.|+ +.++.+++++
T Consensus 138 lk~lr~~~~~~~~lT~ 153 (312)
T cd02871 138 LKQLKDHYGPNFILTM 153 (312)
T ss_pred HHHHHHHcCCCeEEEE
Confidence 55554 3466778887
No 119
>PF08924 DUF1906: Domain of unknown function (DUF1906); InterPro: IPR015020 This entry represents a family of uncharacterised hypothetical bacterial proteins. ; PDB: 1SFS_A.
Probab=27.89 E-value=47 Score=27.48 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=16.1
Q ss_pred hHHHHHHHHHCCCeeeEE
Q 044794 34 IKALADYVHAKGLRLGIY 51 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY 51 (297)
++.+.+.||+.|.+.|||
T Consensus 118 ~~g~~~~l~~~gY~~GvY 135 (136)
T PF08924_consen 118 FRGWNSALGASGYRPGVY 135 (136)
T ss_dssp HHHHHHHHGGGT-EEEEE
T ss_pred HHHHHHHHhhCCCcceee
Confidence 788999999999999999
No 120
>KOG3340 consensus Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=27.70 E-value=44 Score=32.25 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=21.3
Q ss_pred hHHHHHHHHHCCCeeeEEecCCC
Q 044794 34 IKALADYVHAKGLRLGIYSDAGF 56 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g~ 56 (297)
.+.|++.++..+++||+|.+++.
T Consensus 152 V~EL~~A~rk~dirfGLY~SlfE 174 (454)
T KOG3340|consen 152 VGELASAIRKRDIRFGLYYSLFE 174 (454)
T ss_pred HHHHHHHHHhcCcceeEeecHHH
Confidence 68999999999999999999874
No 121
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=27.37 E-value=2.8e+02 Score=26.64 Aligned_cols=82 Identities=20% Similarity=0.049 Sum_probs=51.3
Q ss_pred HHHHHHHHHCCCeeeEEecCC-CccCCCCCCCcc-hhHHhHHHHHHhhCccEEEeeCCCCCC--CChHHHHHHH----HH
Q 044794 35 KALADYVHAKGLRLGIYSDAG-FRTCSNTMPGSL-GHELQDEGTFAQWGIDYLKYDNCFHDG--SKPQERYTKM----SY 106 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g-~~~C~~~~pGs~-~~~~~d~~~fa~WGvDylK~D~c~~~~--~~~~~~y~~m----~~ 106 (297)
+.+..+.|++|+|. +...+ ...-... |... .+.++.++...+.|+|=|-+||=++.. ....+.|..+ ++
T Consensus 67 ~~~~~~A~~~~v~v--~~~~~~~~~~l~~-~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~~~~d~~~~t~llkelr~ 143 (358)
T cd02875 67 DELLCYAHSKGVRL--VLKGDVPLEQISN-PTYRTQWIQQKVELAKSQFMDGINIDIEQPITKGSPEYYALTELVKETTK 143 (358)
T ss_pred HHHHHHHHHcCCEE--EEECccCHHHcCC-HHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCCCcchHHHHHHHHHHHHH
Confidence 57888999999995 33321 1100011 3333 367778888899999999999987643 2345566554 55
Q ss_pred HHHHcCCCeEEec
Q 044794 107 ALLKAGRPILYSI 119 (297)
Q Consensus 107 al~~~gr~i~~s~ 119 (297)
+|.+.++...+++
T Consensus 144 ~l~~~~~~~~Lsv 156 (358)
T cd02875 144 AFKKENPGYQISF 156 (358)
T ss_pred HHhhcCCCcEEEE
Confidence 5555555555555
No 122
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=27.30 E-value=1.1e+02 Score=27.76 Aligned_cols=36 Identities=8% Similarity=0.160 Sum_probs=29.9
Q ss_pred CCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCc
Q 044794 21 GNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFR 57 (297)
Q Consensus 21 G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~ 57 (297)
.+++-..+.-|+ +..+.++|++.|.|+||=..|+|.
T Consensus 86 d~It~H~E~~~~-~~r~i~~Ik~~G~kaGv~lnP~Tp 121 (220)
T COG0036 86 DIITFHAEATEH-IHRTIQLIKELGVKAGLVLNPATP 121 (220)
T ss_pred CEEEEEeccCcC-HHHHHHHHHHcCCeEEEEECCCCC
Confidence 356666665666 999999999999999999999874
No 123
>PRK04208 rbcL ribulose bisophosphate carboxylase; Reviewed
Probab=27.20 E-value=1.4e+02 Score=30.05 Aligned_cols=51 Identities=14% Similarity=0.061 Sum_probs=34.3
Q ss_pred hHHhHHHHHHhhCccEEEeeCCCCCCC--ChHHHHHHHHH----HHHHcCCCeEEec
Q 044794 69 HELQDEGTFAQWGIDYLKYDNCFHDGS--KPQERYTKMSY----ALLKAGRPILYSI 119 (297)
Q Consensus 69 ~~~~d~~~fa~WGvDylK~D~c~~~~~--~~~~~y~~m~~----al~~~gr~i~~s~ 119 (297)
-....+..++.=|+||||-|..-.+.. ...+|..+..+ |-++||+..+|++
T Consensus 177 ~~a~~~y~~~~GGvD~IKDDE~l~~q~f~p~~~Rv~~~~~a~~~a~~eTG~~k~y~~ 233 (468)
T PRK04208 177 NYGRVVYEALRGGLDFTKDDENLNSQPFNRWRDRFLFVMEAIDKAEAETGERKGHYL 233 (468)
T ss_pred HHHHHHHHHHhcCCceeeCCCCCCCCCCccHHHHHHHHHHHHHHHHHhhCCcceEEE
Confidence 344456667778999999998655432 34566665444 4467999877776
No 124
>cd08559 GDPD_periplasmic_GlpQ_like Periplasmic glycerophosphodiester phosphodiesterase domain (GlpQ) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in bacterial and eukaryotic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ. GP-GDEs are involved in glycerol metabolism and catalyze the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. In E. coli, there are two major G3P uptake systems: Glp and Ugp, which contain genes coding for two different GP-GDEs. GlpQ gene from the glp operon codes for a periplasmic phosphodiesterase GlpQ. GlpQ is a dimeric enzyme that hydrolyzes periplasmic glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG), glycerophosphoinositol (GPI),
Probab=27.15 E-value=1.1e+02 Score=28.42 Aligned_cols=49 Identities=20% Similarity=0.068 Sum_probs=34.3
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhh-CccEEEeeC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQW-GIDYLKYDN 89 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~W-GvDylK~D~ 89 (297)
+.+++.+|+.|++...|+--- .|. .-.-....+++.+.+| |||.|=-|+
T Consensus 246 ~~~v~~a~~~Gl~v~~WTvn~--~~~----~~~~~~~~~~~~l~~~~GVdgIiTD~ 295 (296)
T cd08559 246 TDLVKDAHKAGLLVHPYTFRN--ENL----FLAPDFKQDMDALYNAAGVDGVFTDF 295 (296)
T ss_pred hHHHHHHHHcCCEEEEEEecC--ccc----ccccccccCHHHHHHHhCCCEEEcCC
Confidence 689999999999999997431 111 1111235677888899 999886664
No 125
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=26.77 E-value=1.1e+02 Score=28.94 Aligned_cols=41 Identities=7% Similarity=0.053 Sum_probs=34.0
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNC 90 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c 90 (297)
+.+++.+|+.|++..+|+-- ...+++.+.+||||.|=-|+.
T Consensus 235 ~~~v~~~~~~G~~v~vWTVN---------------d~~~~~~l~~~GVDgIiTD~P 275 (315)
T cd08609 235 ALEIKELRKDNVSVNLWVVN---------------EPWLFSLLWCSGVSSVTTNAC 275 (315)
T ss_pred HHHHHHHHHCCCEEEEECCC---------------CHHHHHHHHhcCCCEEEcCCH
Confidence 67899999999999888731 246789999999999988874
No 126
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=25.75 E-value=1.6e+02 Score=28.57 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCCCCCCChHHHHHHHHHHHHHcC
Q 044794 33 GIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAG 112 (297)
Q Consensus 33 Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~~~~~~~y~~m~~al~~~g 112 (297)
|++.|.+++++.|+.+ -+--|....++.+.+. +|++|+=-.... -..+.+++.++|
T Consensus 170 ~l~~L~~~~~~~Gl~~----------------~t~v~d~~~~~~l~~~-vd~lkI~s~~~~-------n~~LL~~~a~~g 225 (360)
T PRK12595 170 GLKILKQVADEYGLAV----------------ISEIVNPADVEVALDY-VDVIQIGARNMQ-------NFELLKAAGRVN 225 (360)
T ss_pred HHHHHHHHHHHcCCCE----------------EEeeCCHHHHHHHHHh-CCeEEECccccc-------CHHHHHHHHccC
Confidence 5666666666666653 1112444566667777 888887543221 134667778899
Q ss_pred CCeEEec
Q 044794 113 RPILYSI 119 (297)
Q Consensus 113 r~i~~s~ 119 (297)
+||+++-
T Consensus 226 kPVilk~ 232 (360)
T PRK12595 226 KPVLLKR 232 (360)
T ss_pred CcEEEeC
Confidence 9999997
No 127
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=25.65 E-value=60 Score=28.08 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=19.5
Q ss_pred hHHHHHHHHHCCCeeeEEecCC
Q 044794 34 IKALADYVHAKGLRLGIYSDAG 55 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g 55 (297)
++.+.+.|++.|.|++||+.+.
T Consensus 115 ~~~f~~~v~~~G~~~~iY~~~~ 136 (191)
T cd06414 115 ANAFCETIEAAGYYPGIYANLS 136 (191)
T ss_pred HHHHHHHHHHcCCCeEEEecHH
Confidence 6888999999999999999764
No 128
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=25.44 E-value=1.4e+02 Score=30.01 Aligned_cols=51 Identities=14% Similarity=0.075 Sum_probs=34.4
Q ss_pred hHHhHHHHHHhhCccEEEeeCCCCCC--CChHHHHHHHH----HHHHHcCCCeEEec
Q 044794 69 HELQDEGTFAQWGIDYLKYDNCFHDG--SKPQERYTKMS----YALLKAGRPILYSI 119 (297)
Q Consensus 69 ~~~~d~~~fa~WGvDylK~D~c~~~~--~~~~~~y~~m~----~al~~~gr~i~~s~ 119 (297)
-....+..++.=|+||||=|..-.+. ....+|..... +|-++||+..+|++
T Consensus 162 ~~A~~~~~~~~GGvD~IKDDE~l~~~~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y~~ 218 (450)
T cd08212 162 NYGRVVYECLRGGLDFTKDDENINSQPFMRWRDRFLFVAEAVNKAQAETGEVKGHYL 218 (450)
T ss_pred HHHHHHHHHHccCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeec
Confidence 34456777888999999999754432 23456655544 45567998877776
No 129
>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism]
Probab=25.34 E-value=88 Score=30.33 Aligned_cols=69 Identities=16% Similarity=0.068 Sum_probs=46.2
Q ss_pred ceeecCCCCCCCCCCCCCeeecCCCCCCChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccE
Q 044794 5 QFLLANGLARTPPMGHGNLRAKTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDY 84 (297)
Q Consensus 5 ~~~ld~G~~~~~~~g~G~l~~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDy 84 (297)
.+|+.|+|+..+.+.. .+.=.+|- ++.+.+.+++.+-. .|-.+.|.+. - .....++++|+|.
T Consensus 205 avqifDsW~g~l~~~~----~~~f~~~~-~~~i~~~vk~~~~~-----~pii~f~~ga----~----~~l~~m~~~g~d~ 266 (352)
T COG0407 205 AVQIFDSWAGVLSMID----YDEFVLPY-MKRIVREVKEVKGG-----VPVIHFCKGA----G----HLLEDMAKTGFDV 266 (352)
T ss_pred EEEeeccccccCCccc----HHHHhhhH-HHHHHHHHHHhCCC-----CcEEEECCCc----H----HHHHHHHhcCCcE
Confidence 5789999987654332 22223454 89999999987654 2334457654 1 3456789999999
Q ss_pred EEeeCCC
Q 044794 85 LKYDNCF 91 (297)
Q Consensus 85 lK~D~c~ 91 (297)
+-+|+--
T Consensus 267 l~vdw~v 273 (352)
T COG0407 267 LGVDWRV 273 (352)
T ss_pred Eeecccc
Confidence 9999864
No 130
>cd08580 GDPD_Rv2277c_like Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.
Probab=25.32 E-value=1.5e+02 Score=27.38 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=32.9
Q ss_pred HHHHHHHHHC-CCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeC
Q 044794 35 KALADYVHAK-GLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDN 89 (297)
Q Consensus 35 k~lad~ih~~-Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~ 89 (297)
+.+++.+|++ |++.-.|+- -...+++.+.+||||=|=-|+
T Consensus 219 ~~~V~~~h~~~gl~V~~WTV---------------N~~~~~~~l~~~GVDgIiTD~ 259 (263)
T cd08580 219 PAAVDCFRRNSKVKIVLFGI---------------NTADDYRLAKCLGADAVMVDS 259 (263)
T ss_pred HHHHHHHHhcCCcEEEEEEe---------------CCHHHHHHHHHcCCCEEEeCC
Confidence 7889999999 999999984 123578899999999887665
No 131
>cd08610 GDPD_GDE6 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE6 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE6 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 4 (GDPD4)) and their metazoan homologs. Mammalian GDE6 is a transmembrane protein predominantly expressed in the spermatocytes of testis. Although the specific physiological function of mammalian GDE6 has not been elucidated, its different pattern of tissue distribution suggests it might play a critical role in the completion of meiosis during male germ cell differentiation.
Probab=25.14 E-value=1.3e+02 Score=28.49 Aligned_cols=42 Identities=14% Similarity=-0.043 Sum_probs=34.2
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCF 91 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~ 91 (297)
+.+++.+|+.|++.-+|+-- ...+++.+.+||||.|=-|...
T Consensus 235 ~~~v~~a~~~Gl~V~vWTVN---------------d~~~~~~l~~~GVDgIiTD~P~ 276 (316)
T cd08610 235 SNDIRDYKAANIHTNVYVIN---------------EPWLFSLAWCSGIHSVTTNNIH 276 (316)
T ss_pred HHHHHHHHHCCCEEEEECCC---------------CHHHHHHHHhCCcCEEEeCCHH
Confidence 67889999999999888731 1367888999999999888763
No 132
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=25.06 E-value=1.5e+02 Score=26.78 Aligned_cols=24 Identities=8% Similarity=0.263 Sum_probs=22.2
Q ss_pred hHHHHHHHHHCCCeeeEEecCCCc
Q 044794 34 IKALADYVHAKGLRLGIYSDAGFR 57 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g~~ 57 (297)
+..+.++||+.|+|+||=..|.+.
T Consensus 99 ~~~~l~~Ir~~g~k~GlalnP~T~ 122 (223)
T PRK08745 99 VHRTIQLIKSHGCQAGLVLNPATP 122 (223)
T ss_pred HHHHHHHHHHCCCceeEEeCCCCC
Confidence 788999999999999999999874
No 133
>cd08606 GDPD_YPL110cp_fungi Glycerophosphodiester phosphodiesterase domain of Saccharomyces cerevisiae YPL110cp and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Saccharomyces cerevisiae YPL110cp and other uncharacterized fungal homologs. The product of S. cerevisiae ORF YPL110c (GDE1), YPL110cp (Gde1p), displays homology to bacterial and mammalian glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46), which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. S. cerevisiae YPL110cp has been characterized as a cytoplasmic glycerophosphocholine (GPC)-specific phosphodiesterase that selectively hydrolyzes GPC, not glycerophosphoinositol (GPI), to generate choline and glycerolphosphate. YPL110cp has multi-domain architecture, including not only C-terminal GDPD, but also an SPX N-terminal domain along with several ankyrin repeats, which imp
Probab=24.76 E-value=1.4e+02 Score=27.27 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=32.5
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNC 90 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c 90 (297)
+.+++.+|++|++...|+-. ... ..+++.+.+||||-|=.|.-
T Consensus 235 ~~~v~~~~~~Gl~v~~WTv~-----~n~--------~~~~~~l~~~GVdgIiTD~p 277 (286)
T cd08606 235 PRLIQVVKRSGLVCVSYGVL-----NND--------PENAKTQVKAGVDAVIVDSV 277 (286)
T ss_pred hHHHHHHHHCCcEEEEECCc-----cCC--------HHHHHHHHHcCCCEEEECCH
Confidence 57889999999999888731 111 24678899999999888764
No 134
>PF06134 RhaA: L-rhamnose isomerase (RhaA); InterPro: IPR009308 This family consists of several bacterial L-rhamnose isomerase proteins (5.3.1.14 from EC). This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including Escherichia coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. ; GO: 0008740 L-rhamnose isomerase activity, 0030145 manganese ion binding, 0019299 rhamnose metabolic process; PDB: 1DE5_A 1D8W_D 1DE6_B 3P14_B 3UU0_B.
Probab=24.46 E-value=1.6e+02 Score=29.04 Aligned_cols=72 Identities=18% Similarity=0.336 Sum_probs=39.8
Q ss_pred CCChHHHHHHHHHCCCeeeEEecCCCccCCCCCCC-cchhHHhHHHHHHhhCccEEEeeCCCCCCCChHHHHHHHHHHH-
Q 044794 31 PSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPG-SLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYAL- 108 (297)
Q Consensus 31 P~Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pG-s~~~~~~d~~~fa~WGvDylK~D~c~~~~~~~~~~y~~m~~al- 108 (297)
|.=++.++++.+++|+++++-.+-+.+.-. .-| +..|.+.-++.|. +++| .+.+.+++++
T Consensus 111 p~hF~~Wv~wAke~glgLdfNpt~Fshp~~--~dg~TLs~pD~~IR~fw--------I~H~--------~~cr~I~~~~G 172 (417)
T PF06134_consen 111 PEHFEKWVDWAKENGLGLDFNPTFFSHPKA--KDGLTLSHPDEEIRDFW--------IEHG--------KACRRIAEYFG 172 (417)
T ss_dssp GGGGHHHHHHHHHCT-EEEEE---SSSGGG--TTS-STT-SSHHHHHHH--------HHHH--------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCcccCccccCCccc--cCCCcccCCCHHHHHHH--------HHHH--------HHHHHHHHHHH
Confidence 445899999999999999976655554322 124 5666666666654 2333 3444444444
Q ss_pred HHcCCCeEEecC
Q 044794 109 LKAGRPILYSIW 120 (297)
Q Consensus 109 ~~~gr~i~~s~w 120 (297)
++.|.|-+..+|
T Consensus 173 ~~lg~~cv~niW 184 (417)
T PF06134_consen 173 SELGSPCVMNIW 184 (417)
T ss_dssp HHHTS-EEEEEE
T ss_pred HhhCCCcceeee
Confidence 355666666663
No 135
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=24.39 E-value=1.9e+02 Score=25.25 Aligned_cols=26 Identities=35% Similarity=0.712 Sum_probs=22.8
Q ss_pred CCCCCChHHHHHHHHHCCCeeeEEecC
Q 044794 28 STFPSGIKALADYVHAKGLRLGIYSDA 54 (297)
Q Consensus 28 ~rFP~Glk~lad~ih~~Glk~GiY~~~ 54 (297)
.-|| |++.+-+.+|++|+++||-+..
T Consensus 89 ~~~~-gv~e~L~~L~~~g~~l~i~T~k 114 (220)
T COG0546 89 RLFP-GVKELLAALKSAGYKLGIVTNK 114 (220)
T ss_pred ccCC-CHHHHHHHHHhCCCeEEEEeCC
Confidence 3477 5999999999999999999975
No 136
>cd08602 GDPD_ScGlpQ1_like Glycerophosphodiester phosphodiesterase domain of Streptomycin coelicolor (GlpQ1) and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of putative bacterial and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDE, EC 3.1.4.46) similar to Escherichia coli periplasmic phosphodiesterase GlpQ, as well as plant glycerophosphodiester phosphodiesterases (GP-PDEs), all of which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. The prototypes of this family include putative secreted phosphodiesterase encoded by gene glpQ1 (SCO1565) from the pho regulon in Streptomyces coelicolor genome, and in plants, two distinct Arabidopsis thaliana genes, AT5G08030 and AT1G74210, coding putative GP-PDEs from the cell walls and vacuoles, respectively.
Probab=24.38 E-value=1.8e+02 Score=27.41 Aligned_cols=53 Identities=23% Similarity=0.229 Sum_probs=34.7
Q ss_pred hHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchh-HHhHHHHHHhhCccEEEeeC
Q 044794 34 IKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGH-ELQDEGTFAQWGIDYLKYDN 89 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~-~~~d~~~fa~WGvDylK~D~ 89 (297)
.+.+++.+|+.||+.-.|+-.... .. .+..+.+ ....++.+.+||||.|=-|+
T Consensus 255 ~~~~v~~a~~~gl~v~~wTvn~~~--~~-~~~~~~~~~~~~~~~l~~~GVdgiiTD~ 308 (309)
T cd08602 255 PTDLVEDAHAAGLQVHPYTFRNEN--TF-LPPDFFGDPYAEYRAFLDAGVDGLFTDF 308 (309)
T ss_pred ccHHHHHHHHcCCEEEEEEecCCC--cc-cCcccCCCHHHHHHHHHHhCCCEEeCCC
Confidence 458999999999999999854211 00 1222211 23567778889999886654
No 137
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=23.98 E-value=68 Score=31.66 Aligned_cols=22 Identities=36% Similarity=0.703 Sum_probs=20.0
Q ss_pred hHHHHHHHHHCCCeeeEEecCC
Q 044794 34 IKALADYVHAKGLRLGIYSDAG 55 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g 55 (297)
++.++..+.+.||.||||...+
T Consensus 103 vgela~Avr~qGL~FGvy~s~a 124 (430)
T COG3669 103 VGELAKAVREQGLRFGVYLSGA 124 (430)
T ss_pred HHHHHHHHHHcCCeeeEeeccC
Confidence 6889999999999999999944
No 138
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=23.92 E-value=56 Score=27.81 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.5
Q ss_pred ChHHHHHHHHHCC-CeeeEEecCC
Q 044794 33 GIKALADYVHAKG-LRLGIYSDAG 55 (297)
Q Consensus 33 Glk~lad~ih~~G-lk~GiY~~~g 55 (297)
.++++++.++++| .++|||+.+.
T Consensus 105 ~~~~f~~~~~~~gg~~~~iY~~~~ 128 (186)
T cd00599 105 WLNAFLNEVEALTGKKPIIYTSPS 128 (186)
T ss_pred HHHHHHHHHHHHHCCceEEEEcHH
Confidence 4799999999998 9999999874
No 139
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=23.91 E-value=1.1e+02 Score=25.74 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=26.2
Q ss_pred CCCeeecCC-CCCCChHHHHHHHHHCCCeeeEEecC
Q 044794 20 HGNLRAKTS-TFPSGIKALADYVHAKGLRLGIYSDA 54 (297)
Q Consensus 20 ~G~l~~d~~-rFP~Glk~lad~ih~~Glk~GiY~~~ 54 (297)
+|.+.+... +...|++.+.++++++|++++|-++.
T Consensus 33 Dgtl~~~~~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~ 68 (170)
T TIGR01668 33 DNTLVYPDHNEAYPALRDWIEELKAAGRKLLIVSNN 68 (170)
T ss_pred CCccccCCCCCcChhHHHHHHHHHHcCCEEEEEeCC
Confidence 455555433 34457999999999999999998863
No 140
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=23.86 E-value=86 Score=28.33 Aligned_cols=30 Identities=13% Similarity=0.387 Sum_probs=24.7
Q ss_pred ecCCCCCCChHHHHHHHHHCCCeeeEEecCC
Q 044794 25 AKTSTFPSGIKALADYVHAKGLRLGIYSDAG 55 (297)
Q Consensus 25 ~d~~rFP~Glk~lad~ih~~Glk~GiY~~~g 55 (297)
+.....| |...|+.+||.+|+++++.+...
T Consensus 89 ~~~~~~P-Ga~kLv~~L~~~gip~alat~s~ 118 (222)
T KOG2914|consen 89 MNSILMP-GAEKLVNHLKNNGIPVALATSST 118 (222)
T ss_pred cccccCC-cHHHHHHHHHhCCCCeeEEecCC
Confidence 3444456 89999999999999999999764
No 141
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=22.97 E-value=3.3e+02 Score=24.02 Aligned_cols=78 Identities=14% Similarity=0.016 Sum_probs=45.8
Q ss_pred hHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCCCCCCChHHHHHHHHHHHHHcCC
Q 044794 34 IKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMSYALLKAGR 113 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~~~~~~~y~~m~~al~~~gr 113 (297)
+...+..|+..--.+=|++..-....+.. +++..-+....+...+.|+|||=++... +......+++.+.+.
T Consensus 43 ~~~~~~~lr~~~~~piI~T~R~~~eGG~~-~~~~~~~~~ll~~~~~~~~d~vDiEl~~-------~~~~~~~~~~~~~~~ 114 (225)
T cd00502 43 VAEQLSLLRELTPLPIIFTVRTKSEGGNF-EGSEEEYLELLEEALKLGPDYVDIELDS-------ALLEELINSRKKGNT 114 (225)
T ss_pred HHHHHHHHHHhCCCCEEEEEcccccCCCc-CCCHHHHHHHHHHHHHHCCCEEEEEecc-------hHHHHHHHHHHhCCC
Confidence 45556666643214556665543332222 4554444445677889999999999753 233444444445677
Q ss_pred CeEEec
Q 044794 114 PILYSI 119 (297)
Q Consensus 114 ~i~~s~ 119 (297)
+++.|.
T Consensus 115 kiI~S~ 120 (225)
T cd00502 115 KIIGSY 120 (225)
T ss_pred EEEEEe
Confidence 899888
No 142
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=22.90 E-value=1e+02 Score=27.20 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=20.9
Q ss_pred hHHHHHHHHHCCCeeeEEecCCCc
Q 044794 34 IKALADYVHAKGLRLGIYSDAGFR 57 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g~~ 57 (297)
+..+.+++++.|+|+||=..|++.
T Consensus 94 ~~~~i~~ik~~g~k~GialnP~T~ 117 (201)
T PF00834_consen 94 PKETIKYIKEAGIKAGIALNPETP 117 (201)
T ss_dssp HHHHHHHHHHTTSEEEEEE-TTS-
T ss_pred HHHHHHHHHHhCCCEEEEEECCCC
Confidence 788999999999999999999874
No 143
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=22.76 E-value=39 Score=35.31 Aligned_cols=72 Identities=19% Similarity=0.206 Sum_probs=43.5
Q ss_pred CCCeeecCCCC--CCChHHHHHHHHHCCCeeeEEecCCC-----ccCCC--------------------------C-CCC
Q 044794 20 HGNLRAKTSTF--PSGIKALADYVHAKGLRLGIYSDAGF-----RTCSN--------------------------T-MPG 65 (297)
Q Consensus 20 ~G~l~~d~~rF--P~Glk~lad~ih~~Glk~GiY~~~g~-----~~C~~--------------------------~-~pG 65 (297)
.|..-|. +|| |.+||+|+|.+|++|+-.=|=.-|+. +.|.. + ++.
T Consensus 201 ~g~yAp~-sryGtPedfk~fVD~aH~~GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~E 279 (628)
T COG0296 201 TGYYAPT-SRYGTPEDFKALVDAAHQAGIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNE 279 (628)
T ss_pred ceecccc-ccCCCHHHHHHHHHHHHHcCCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHH
Confidence 4555555 357 67999999999999975322222220 11111 0 233
Q ss_pred cchhHHhHHHH-HHhhCccEEEeeCCCC
Q 044794 66 SLGHELQDEGT-FAQWGIDYLKYDNCFH 92 (297)
Q Consensus 66 s~~~~~~d~~~-fa~WGvDylK~D~c~~ 92 (297)
+..|.-..+.. +.+..||=|.+|....
T Consensus 280 VR~Fll~nal~Wl~~yHiDGlRvDAV~s 307 (628)
T COG0296 280 VRNFLLANALYWLEEYHIDGLRVDAVAS 307 (628)
T ss_pred HHHHHHHHHHHHHHHhCCcceeeehhhh
Confidence 44554444555 4689999999998743
No 144
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=22.66 E-value=69 Score=27.47 Aligned_cols=23 Identities=22% Similarity=0.418 Sum_probs=19.9
Q ss_pred ChHHHHHHHHHC-CCeeeEEecCC
Q 044794 33 GIKALADYVHAK-GLRLGIYSDAG 55 (297)
Q Consensus 33 Glk~lad~ih~~-Glk~GiY~~~g 55 (297)
-++.+.+.|+++ |.+++||+.+.
T Consensus 104 ~~~~f~~~v~~~~G~~~~iY~~~~ 127 (184)
T cd06525 104 YVLRFIEEFEKLSGLKVGIYTYTS 127 (184)
T ss_pred HHHHHHHHHHHHHCCCeEEEecHH
Confidence 367888999999 99999999874
No 145
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=22.26 E-value=1.7e+02 Score=29.57 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=34.4
Q ss_pred hHHhHHHHHHhhCccEEEeeCCCCCC--CChHHHHHHHHHHH----HHcCCCeEEec
Q 044794 69 HELQDEGTFAQWGIDYLKYDNCFHDG--SKPQERYTKMSYAL----LKAGRPILYSI 119 (297)
Q Consensus 69 ~~~~d~~~fa~WGvDylK~D~c~~~~--~~~~~~y~~m~~al----~~~gr~i~~s~ 119 (297)
-....+..++.=|+||||=|..-.+. ....+|..+..+|+ ++||+..+|++
T Consensus 184 ~~A~~~y~~~~GGvD~IKDDE~l~dq~~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~ 240 (475)
T CHL00040 184 NYGRAVYECLRGGLDFTKDDENVNSQPFMRWRDRFLFCAEAIYKAQAETGEIKGHYL 240 (475)
T ss_pred HHHHHHHHHHcCCCcccccCccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceeee
Confidence 34455667788899999999764433 23466666555555 57899777665
No 146
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=20.92 E-value=5.6e+02 Score=23.42 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=43.1
Q ss_pred cCCCCCCChHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCCCCCCCChHHHHHHHH
Q 044794 26 KTSTFPSGIKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNCFHDGSKPQERYTKMS 105 (297)
Q Consensus 26 d~~rFP~Glk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c~~~~~~~~~~y~~m~ 105 (297)
|.+.+|+-| -+.+.+-...+|.|..-.. | ..++.++..|+|||=+|.=+... ..+....+.
T Consensus 2 ~~~~~~n~l---k~~l~~g~~~~g~~~~~~s-------p-------~~~e~~a~~G~D~v~iD~EHg~~--~~~~~~~~i 62 (256)
T PRK10558 2 NNDVFPNKF---KAALAAKQVQIGCWSALAN-------P-------ITTEVLGLAGFDWLVLDGEHAPN--DVSTFIPQL 62 (256)
T ss_pred CCCccCHHH---HHHHHcCCceEEEEEcCCC-------c-------HHHHHHHhcCCCEEEEccccCCC--CHHHHHHHH
Confidence 345677754 4566666677888874311 1 45678899999999999765432 123344555
Q ss_pred HHHHHcCCC
Q 044794 106 YALLKAGRP 114 (297)
Q Consensus 106 ~al~~~gr~ 114 (297)
.|++..|-+
T Consensus 63 ~a~~~~g~~ 71 (256)
T PRK10558 63 MALKGSASA 71 (256)
T ss_pred HHHhhcCCC
Confidence 555555543
No 147
>KOG2672 consensus Lipoate synthase [Coenzyme transport and metabolism]
Probab=20.91 E-value=1.6e+02 Score=27.95 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=18.5
Q ss_pred HHhHHHHHHhhCccEEEeeCCCC
Q 044794 70 ELQDEGTFAQWGIDYLKYDNCFH 92 (297)
Q Consensus 70 ~~~d~~~fa~WGvDylK~D~c~~ 92 (297)
.+.-++..++||+|||-+--..-
T Consensus 144 PeNTAeAIasWgl~YiVlTSVDR 166 (360)
T KOG2672|consen 144 PENTAEAIASWGLDYIVLTSVDR 166 (360)
T ss_pred cccHHHHHHHcCCCeEEEEeccc
Confidence 35678899999999999866654
No 148
>cd08608 GDPD_GDE2 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE2 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 5 (GDPD5)) and their metazoan homologs. Mammalian GDE2 is transmembrane protein primarily expressed in mature neurons. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyze the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE2 selectively hydrolyzes glycerophosphocholine (GPC) and has been characterized as GPC-GDE (EC 3.1.4.2) that contributes to osmotic regulation of cellular GPC. Mammalian GDE2 functions in a complex with an antioxidant scavenger peroxiredoxin1 (Prdx1) to control motor neuron differenti
Probab=20.66 E-value=2e+02 Score=27.86 Aligned_cols=41 Identities=15% Similarity=0.039 Sum_probs=34.1
Q ss_pred HHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCC
Q 044794 35 KALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNC 90 (297)
Q Consensus 35 k~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c 90 (297)
+.+++.+|+.|++.-+|+-- ...+++.+.+||||.|=-|+.
T Consensus 213 ~~~v~~~~~~Gl~V~vWTVN---------------~~~~~~~l~~~GVdgIiTD~P 253 (351)
T cd08608 213 AQEIRDYSASNLSVNLYTVN---------------EPWLYSLLWCSGVPSVTSDAS 253 (351)
T ss_pred HHHHHHHHHCCCEEEEEecC---------------CHHHHHHHHHCCCCEEEECCH
Confidence 67889999999999999741 146788899999999998876
No 149
>PF00763 THF_DHG_CYH: Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; InterPro: IPR020630 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the N-terminal catalytic domain of these enzymes. ; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 2C2X_B 2C2Y_A 1EDZ_A 1EE9_A 4A26_B 3NGL_C 3NGX_A 1B0A_A 1DIA_A 1A4I_B ....
Probab=20.51 E-value=1.4e+02 Score=23.79 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=36.1
Q ss_pred hHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchhHHhHHHHHHhhCccEEEeeCC
Q 044794 34 IKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGHELQDEGTFAQWGIDYLKYDNC 90 (297)
Q Consensus 34 lk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~~~~d~~~fa~WGvDylK~D~c 90 (297)
++.-+..++++|.+++|=.= ..+..|+|..|.+.-.+...+-|++|-.+.+-
T Consensus 16 l~~~i~~l~~~~~~P~Laii-----~vg~d~~S~~Y~~~k~k~~~~~Gi~~~~~~l~ 67 (117)
T PF00763_consen 16 LKEEIEKLKEKGITPKLAII-----LVGDDPASISYVRSKQKAAEKLGIEFELIELP 67 (117)
T ss_dssp HHHHHHHHHHCT---EEEEE-----EES--HHHHHHHHHHHHHHHHHT-EEEEEEE-
T ss_pred HHHHHHHHHhcCCCcEEEEE-----ecCCChhHHHHHHHHHHHHHHcCCceEEEECC
Confidence 56677778888877665442 22344999999999999999999999998874
No 150
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=20.13 E-value=3.2e+02 Score=26.97 Aligned_cols=76 Identities=18% Similarity=0.244 Sum_probs=50.5
Q ss_pred eecCCCCCCCCCC----CCCeeecC--------CCCCCC-----hHHHHHHHHHCCCeeeEEecCCCccCCCCCCCcchh
Q 044794 7 LLANGLARTPPMG----HGNLRAKT--------STFPSG-----IKALADYVHAKGLRLGIYSDAGFRTCSNTMPGSLGH 69 (297)
Q Consensus 7 ~ld~G~~~~~~~g----~G~l~~d~--------~rFP~G-----lk~lad~ih~~Glk~GiY~~~g~~~C~~~~pGs~~~ 69 (297)
-|..+|-.-|+.| .+++.|-. +++|.| -+.+-.+++++|.|.|+.++-- . |.. |
T Consensus 6 ~lp~~w~~~p~~G~~~~~~rfi~~K~pL~~~~~~k~~~~~~~f~~~dl~~~l~~~~~~vgl~iDlt-n-t~r-------y 76 (393)
T KOG2386|consen 6 ELPPRWLDCPPVGAVIDDTRFIPFKTPLNSSYSTKTFPGSQRFQPKDLFELLKEHNYKVGLKIDLT-N-TLR-------Y 76 (393)
T ss_pred cCCcccccCCCCCCccccceEEEEecccCCCCCcCCCCCccccCHHHHHHHHHhcCceEEEEEecc-c-eee-------e
Confidence 4778898888887 35555432 223322 5889999999999999999852 1 222 2
Q ss_pred HHhHHHHHHhhCccEEEeeCCCCC
Q 044794 70 ELQDEGTFAQWGIDYLKYDNCFHD 93 (297)
Q Consensus 70 ~~~d~~~fa~WGvDylK~D~c~~~ 93 (297)
+ +-..+++-|+-|+|+-.-+.+
T Consensus 77 y--~~~~~~~~g~~Y~K~~c~g~~ 98 (393)
T KOG2386|consen 77 Y--DKPELEERGVKYLKRNCPGRG 98 (393)
T ss_pred e--ccccccccceeEEEeccCCcc
Confidence 2 222356778888888776665
Done!