BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044795
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 117 bits (294), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 134/287 (46%), Gaps = 53/287 (18%)
Query: 37 IGQACQHDGFFQVKNHGIPETIINNMLSISRAFFKLLESERLKSY-------------SD 83
I AC++ GFF++ NHGIP + + + ++ +K +R K +D
Sbjct: 24 IKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEGVQAEVTD 83
Query: 84 DPSKS----KRLSISFNINTEKEVVAEYCTSVRG------------------------DY 115
+S K L IS NI+ ++ EY R Y
Sbjct: 84 XDWESTFFLKHLPIS-NISEVPDLDEEYREVXRDFAKRLEKLAEELLDLLCENLGLEKGY 142
Query: 116 IDKAL-GKHGQHMAL---NYCPPCPQPELTYGLPGHTDPNLITVLLQDD-VPGLQVLRNG 170
+ A G G + NY PPCP+P+L GL HTD I +L QDD V GLQ+L++G
Sbjct: 143 LKNAFYGSKGPNFGTKVSNY-PPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDG 201
Query: 171 KWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGISIPTFYCPSPDAVIAP 230
+W+ V P ++ +VN+ DQ++V++N YKSV H + D S+ +FY P DAVI P
Sbjct: 202 QWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYP 261
Query: 231 AKDLID---ERHLAFYTNFTYAEYYQKFWNRGLAAEGCLDLFKASTA 274
A L++ E + Y F + +Y + + GL + F+A A
Sbjct: 262 APALVEKEAEENKQVYPKFVFDDYXKLY--AGLKFQAKEPRFEAXKA 306
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 121/273 (44%), Gaps = 53/273 (19%)
Query: 34 LTEIGQACQHDGFFQVKNHGIPETIINNMLSISRAFFKLLESERLKSYSDD--------- 84
+ E+ +A G + NHGIP ++ + FF L E+ K +D
Sbjct: 66 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 125
Query: 85 ----------------------PSKSKRLSISFNINTEK-EVVAEYCTSVR--------- 112
P + + LSI ++ E +EY +R
Sbjct: 126 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 185
Query: 113 --------GDYIDKALGKHGQ---HMALNYCPPCPQPELTYGLPGHTDPNLITVLLQDDV 161
D ++K +G + M +NY P CPQPEL G+ HTD + +T +L + V
Sbjct: 186 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMV 245
Query: 162 PGLQVLRNGKWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGISIPTFYC 221
PGLQ+ GKW+ +P++ +++I D +++LSN YKS+LH LVN +K IS F
Sbjct: 246 PGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCE 305
Query: 222 PSPDA-VIAPAKDLIDERHLAFYTNFTYAEYYQ 253
P D V+ P +++ A + T+A++ +
Sbjct: 306 PPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE 338
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 105 bits (263), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 121/273 (44%), Gaps = 53/273 (19%)
Query: 34 LTEIGQACQHDGFFQVKNHGIPETIINNMLSISRAFFKLLESERLKSYSDD--------- 84
+ E+ +A G + NHGIP ++ + FF L E+ K +D
Sbjct: 67 IEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 85 ----------------------PSKSKRLSISFNINTEK-EVVAEYCTSVR--------- 112
P + + LSI ++ E +EY +R
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 113 --------GDYIDKALGKHGQ---HMALNYCPPCPQPELTYGLPGHTDPNLITVLLQDDV 161
D ++K +G + M +NY P CPQPEL G+ HTD + +T +L + V
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMV 246
Query: 162 PGLQVLRNGKWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGISIPTFYC 221
PGLQ+ GKW+ +P++ +++I D +++LSN YKS+LH LVN +K IS F
Sbjct: 247 PGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCE 306
Query: 222 PSPDA-VIAPAKDLIDERHLAFYTNFTYAEYYQ 253
P D V+ P +++ A + T+A++ +
Sbjct: 307 PPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIE 339
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 117/273 (42%), Gaps = 53/273 (19%)
Query: 34 LTEIGQACQHDGFFQVKNHGIPETIINNMLSISRAFFKLLESERLKSYSDD--------- 84
+ E+ +A G + NHGIP + + FF L E+ K +D
Sbjct: 67 IEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQGYG 126
Query: 85 ----------------------PSKSKRLSISFNINTEK-EVVAEYCTSVR--------- 112
P + + LSI ++ E +EY +R
Sbjct: 127 SKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKA 186
Query: 113 --------GDYIDKALGKHGQ---HMALNYCPPCPQPELTYGLPGHTDPNLITVLLQDDV 161
D ++K +G + +NY P CPQPEL G+ HTD + +T +L + V
Sbjct: 187 LSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILHNXV 246
Query: 162 PGLQVLRNGKWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGISIPTFYC 221
PGLQ+ GKW+ +P++ + +I D +++LSN YKS+LH LVN +K IS F
Sbjct: 247 PGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCE 306
Query: 222 PSPDA-VIAPAKDLIDERHLAFYTNFTYAEYYQ 253
P D V+ P + + A + T+A++ +
Sbjct: 307 PPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIE 339
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 3/122 (2%)
Query: 102 EVVAEYCTSVRGDYIDKALGKHGQHMALNYCPPCPQPELTYGLPGHTDPNLITVLLQDDV 161
E +A Y R D+ + + L + PP P+ H D N IT+LL +
Sbjct: 147 EAIATYLKLER-DFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEE 205
Query: 162 PGLQVL-RNGKWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWALVNCDKEGISIPTFY 220
GL+VL R+G+WLP++P P ++NI D ++ L+N++ S +H +VN E +P +
Sbjct: 206 GGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVH-RVVNPPPERRGVPRYS 264
Query: 221 CP 222
P
Sbjct: 265 TP 266
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 82/203 (40%), Gaps = 23/203 (11%)
Query: 43 HDGFFQVKNHGIPETIINNMLSISRAFFKLLESERLKSYSDDPSKSKRLSISFNINTEKE 102
HDGFF I ET + + + ++ + R+ D ++ L+ NT
Sbjct: 66 HDGFFPA---SISETAKGHTVKDIKEYYHVYPWGRIP----DSLRANILAYYEKANTLAS 118
Query: 103 VVAEYCTSVRGDYIDKALG---------KHGQHMALNYCPPCPQPELTYGL--PGHTDPN 151
+ E+ + D I H + + + PP E + H D N
Sbjct: 119 ELLEWIETYSPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDIN 178
Query: 152 LITVLLQDDVPGLQV-LRNGKWLPVSPIPNTFIVNISDQMQVLSNDLYKSVLHWAL---- 206
LITVL + PGLQV ++G WL V I+NI D +Q S+ + S H +
Sbjct: 179 LITVLPTANEPGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHRVINPEG 238
Query: 207 VNCDKEGISIPTFYCPSPDAVIA 229
+ K IS+P F P P V++
Sbjct: 239 TDKTKSRISLPLFLHPHPSVVLS 261
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 131 YCPPCPQPELTYGLPG-------HTDPNLITVLLQDDVPGLQVLRNGKWLPVSPIPNTFI 183
Y P P+ + G H D +LITVL Q +V LQV + + ++
Sbjct: 191 YLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEADDTGYL 250
Query: 184 VNISDQMQVLSNDLYKSVLH---WALVNCDKEGISIPTFYCPSPDAVIAP 230
+N M L+N+ YK+ +H W VN +++ S+P F D+VI P
Sbjct: 251 INCGSYMAHLTNNYYKAPIHRVKW--VNAERQ--SLPFFVNLGYDSVIDP 296
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 14/110 (12%)
Query: 131 YCPPCPQPELTYGLPG-------HTDPNLITVLLQDDVPGLQVLRNGKWLPVSPIPNTFI 183
Y P P+ + G H D +LITVL Q +V LQV + + ++
Sbjct: 191 YLDPYPEAAIKTAADGTKLSFEWHEDVSLITVLYQSNVQNLQVETAAGYQDIEADDTGYL 250
Query: 184 VNISDQMQVLSNDLYKSVLH---WALVNCDKEGISIPTFYCPSPDAVIAP 230
+N M L+N+ YK+ +H W VN +++ S+P F D+VI P
Sbjct: 251 INCGSYMAHLTNNYYKAPIHRVKW--VNAERQ--SLPFFVNLGYDSVIDP 296
>pdb|1PUB|A Chain A, Gm2-Activator Protein Crystal Structure
Length = 162
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 93 ISFNINTEKEVVAEYCTSVRGDYIDKALGKH---GQHMALNYCPPCPQPELTYGLPGH 147
+ ++ EKEV + DYI +H M + PCP+P TYGLP H
Sbjct: 49 LKVDLVLEKEVAGLWIKIPCTDYIGSCTFEHFCDVLDMLIPTGEPCPEPLRTYGLPCH 106
>pdb|1G13|A Chain A, Human Gm2 Activator Structure
pdb|1G13|B Chain B, Human Gm2 Activator Structure
pdb|1G13|C Chain C, Human Gm2 Activator Structure
Length = 162
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 93 ISFNINTEKEVVAEYCTSVRGDYIDKALGKHGQHMALNYCP---PCPQPELTYGLPGH 147
+ ++ EKEV + DYI +H + P PCP+P TYGLP H
Sbjct: 49 LKVDLVLEKEVAGLWIKIPCTDYIGSCTFEHFCDVLDXLIPTGEPCPEPLRTYGLPCH 106
>pdb|2AG9|A Chain A, Crystal Structure Of The Y137s Mutant Of Gm2-Activator
Protein
pdb|2AG9|B Chain B, Crystal Structure Of The Y137s Mutant Of Gm2-Activator
Protein
Length = 164
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 93 ISFNINTEKEVVAEYCTSVRGDYIDKALGKH---GQHMALNYCPPCPQPELTYGLPGH 147
+ ++ EKEV + DYI +H M + PCP+P TYGLP H
Sbjct: 51 LKVDLVLEKEVAGLWIKIPCTDYIGSCTFEHFCDVLDMLIPTGEPCPEPLRTYGLPCH 108
>pdb|1PU5|A Chain A, Gm2-activator Protein Crystal Structure
pdb|1PU5|B Chain B, Gm2-activator Protein Crystal Structure
pdb|1PU5|C Chain C, Gm2-activator Protein Crystal Structure
pdb|1TJJ|A Chain A, Human Gm2 Activator Protein Paf Complex
pdb|1TJJ|B Chain B, Human Gm2 Activator Protein Paf Complex
pdb|1TJJ|C Chain C, Human Gm2 Activator Protein Paf Complex
pdb|2AF9|A Chain A, Crystal Structure Analysis Of Gm2-Activator Protein
Complexed With Phosphatidylcholine
pdb|2AG2|A Chain A, Crystal Structure Analysis Of Gm2-Activator Protein
Complexed With Phosphatidylcholine
pdb|2AG2|B Chain B, Crystal Structure Analysis Of Gm2-Activator Protein
Complexed With Phosphatidylcholine
pdb|2AG2|C Chain C, Crystal Structure Analysis Of Gm2-Activator Protein
Complexed With Phosphatidylcholine
pdb|2AG4|A Chain A, Crystal Structure Analysis Of Gm2-Activator Protein
Complexed With Phosphatidylcholine
pdb|2AG4|B Chain B, Crystal Structure Analysis Of Gm2-Activator Protein
Complexed With Phosphatidylcholine
Length = 164
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 3/58 (5%)
Query: 93 ISFNINTEKEVVAEYCTSVRGDYIDKALGKH---GQHMALNYCPPCPQPELTYGLPGH 147
+ ++ EKEV + DYI +H M + PCP+P TYGLP H
Sbjct: 51 LKVDLVLEKEVAGLWIKIPCTDYIGSCTFEHFCDVLDMLIPTGEPCPEPLRTYGLPCH 108
>pdb|2ERW|A Chain A, Crystal Structure Of Infestin 4, A Factor Xiia Inhibitor
Length = 56
Score = 28.5 bits (62), Expect = 3.7, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Query: 130 NYCPPCPQPELTYGLPGHTDPNLITVLLQDDVPGLQVLRNGK 171
NY P C TYG +P ++ Q VPGL+++ G+
Sbjct: 11 NYVPVCGSDGKTYG-----NPCMLNCAAQTKVPGLKLVHEGR 47
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 165 QVLRNGKWLPVSPIPN 180
+VL+NG+WL SPIP
Sbjct: 224 EVLKNGEWLXASPIPK 239
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,353,216
Number of Sequences: 62578
Number of extensions: 353643
Number of successful extensions: 911
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 885
Number of HSP's gapped (non-prelim): 29
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)