BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044796
(186 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 72.4 bits (176), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 71/145 (48%), Gaps = 18/145 (12%)
Query: 3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEV 62
L ++ K G F EGKY++ALLQY+ + E ++E+ +
Sbjct: 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEY-------------ESSFSNEEAQK 190
Query: 63 APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
A A LR H N +C LKL F +I+ C KALEL+ K L RR EAH +
Sbjct: 191 AQA-----LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVND 245
Query: 123 FEEAIADMKKILEFDPSNNQAKRTI 147
FE A AD +K+L+ P+N AK +
Sbjct: 246 FELARADFQKVLQLYPNNKAAKTQL 270
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/145 (35%), Positives = 71/145 (48%), Gaps = 18/145 (12%)
Query: 3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEV 62
L ++ K G F EGKY++ALLQY+ + E ++E+ +
Sbjct: 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEY-------------ESSFSNEEAQK 190
Query: 63 APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH 122
A A LR H N +C LKL F +I+ C KALEL+ K L RR EAH +
Sbjct: 191 AQA-----LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND 245
Query: 123 FEEAIADMKKILEFDPSNNQAKRTI 147
FE A AD +K+L+ P+N AK +
Sbjct: 246 FELARADFQKVLQLYPNNKAAKTQL 270
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 17/137 (12%)
Query: 13 GNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAELR 72
GN F +E A+ +Y LR EG A+ E A ++ +
Sbjct: 230 GNTFFKSQNWEMAIKKYTKVLRYV---------------EGSRAA--AEDADGAKLQPVA 272
Query: 73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
C N G C LK+ ++ ++ C +ALE++P+ KAL RRA+ + L+ +++A+AD+KK
Sbjct: 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKK 332
Query: 133 ILEFDPSNNQAKRTILR 149
E P + + +L+
Sbjct: 333 AQEIAPEDKAIQAELLK 349
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 44/70 (62%)
Query: 78 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
N G + K G ++++I+ KALEL+P KA RR A+ K +++AI D +K LE D
Sbjct: 48 NLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELD 107
Query: 138 PSNNQAKRTI 147
P+N +AK+ +
Sbjct: 108 PNNAKAKQNL 117
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 75 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKIL 134
N G + K G ++++I+ KALEL+P A A+ K +++AI +K L
Sbjct: 11 AWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKAL 70
Query: 135 EFDPSNNQA 143
E DP+N +A
Sbjct: 71 ELDPNNAKA 79
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 23/154 (14%)
Query: 3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEV 62
+ A+ K++GN LF E K EEA+ QYE+A+ Q + +++
Sbjct: 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMF-----------QLYGKYQDM 224
Query: 63 APAPEMAELRSICHSNRGICFLKLGKFEESIKECTKAL---ELNPTYMKALIRRAEAHEK 119
A A +++ CH N C +KL +++E+I C L E NP KAL RR +A +
Sbjct: 225 ALA-----VKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP---KALFRRGKAKAE 276
Query: 120 LEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153
L + A D +K ++ P +++A R LR L E
Sbjct: 277 LGQMDSARDDFRKAQKYAP-DDKAIRRELRALAE 309
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 30/129 (23%)
Query: 12 EGNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAEL 71
EGN+LF G Y AL Y AL G A+ + +
Sbjct: 34 EGNELFKCGDYGGALAAYTQAL-------------------GLDATPQDQ---------- 64
Query: 72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMK 131
++ H NR C LKL ++++ E +KA+E + +KAL RR++A EKL ++A+ D++
Sbjct: 65 -AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQ 123
Query: 132 KILEFDPSN 140
+ + +P N
Sbjct: 124 RCVSLEPKN 132
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 33/143 (23%)
Query: 13 GNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAELR 72
GN + +G Y+EA+ Y+ AL P AE
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELD-----------------------------PNNAE-- 44
Query: 73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
N G + K G ++E+I+ KALEL+P +A A+ K ++EAI +K
Sbjct: 45 --AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102
Query: 133 ILEFDPSNNQAKRTILRKLKEMG 155
LE DP+N +AK+ + ++ G
Sbjct: 103 ALELDPNNAEAKQNLGNAKQKQG 125
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%)
Query: 78 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
N G + K G ++E+I+ KALEL+P +A A+ K ++EAI +K LE D
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 138 PSNNQAKRTILRKLKEMGN 156
P+N +A + + G+
Sbjct: 74 PNNAEAWYNLGNAYYKQGD 92
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%)
Query: 78 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
N +C+LKL ++ ++++ C KAL L+ K L RR EA + FE A D +K+LE +
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381
Query: 138 PSNNQAKRTIL 148
P N A+ I
Sbjct: 382 PQNKAARLQIF 392
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 78 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
N +C+LKL ++ ++++ C KAL L+ K L RR EA + FE A D +K+LE +
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381
Query: 138 PSNNQAKRTI 147
P N A+ I
Sbjct: 382 PQNKAARLQI 391
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%)
Query: 78 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
N G + K G ++E+I+ KALEL+P +A A+ K ++EAI +K LE D
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 138 PSNNQAKRTILRKLKEMG 155
P+N +AK+ + ++ G
Sbjct: 74 PNNAEAKQNLGNAKQKQG 91
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADM 130
+ +SN C++ G E+ I+ TKALE+ P + KAL+RRA A+E L +F +A+ D+
Sbjct: 56 VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 112
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 30/133 (22%)
Query: 7 NEAKL------EGNKLFAE-----GKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQS 55
NE KL E FAE G ++ A+ QY++A R +
Sbjct: 364 NETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL------------------EE 405
Query: 56 ASEKKEVAPAPEMAELRSIC-HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRA 114
EK V P + + + S++ L KF +IK TKA EL+P +A I A
Sbjct: 406 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 465
Query: 115 EAHEKLEHFEEAI 127
+ ++E +EAI
Sbjct: 466 QLKLQMEKIDEAI 478
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 90 EESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN 140
+E K KA++LNP Y R + + L+ ++ A D +K +P N
Sbjct: 289 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 339
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%)
Query: 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADM 130
+ +SN C++ G E+ I+ TKALE+ P + KAL+RRA A+E L +F +A+ D+
Sbjct: 60 VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDL 116
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 55/133 (41%), Gaps = 30/133 (22%)
Query: 7 NEAKL------EGNKLFAE-----GKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQS 55
NE KL E FAE G ++ A+ QY++A R +
Sbjct: 368 NETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRL------------------EE 409
Query: 56 ASEKKEVAPAPEMAELRSIC-HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRA 114
EK V P + + + S++ L KF +IK TKA EL+P +A I A
Sbjct: 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469
Query: 115 EAHEKLEHFEEAI 127
+ ++E +EAI
Sbjct: 470 QLKLQMEKIDEAI 482
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 90 EESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN 140
+E K KA++LNP Y R + + L+ ++ A D +K +P N
Sbjct: 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN 343
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 53.5 bits (127), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 33/132 (25%)
Query: 12 EGNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAEL 71
+GN+ F +G Y +A+ Y A++ P+ A+L
Sbjct: 22 KGNECFQKGDYPQAMKHYTEAIKRN-----------------------------PKDAKL 52
Query: 72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMK 131
+SNR C+ KL +F+ ++K+C + ++L PT++K R+A A E ++ + +A+ +
Sbjct: 53 ----YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQ 108
Query: 132 KILEFDPSNNQA 143
K L+ D S +A
Sbjct: 109 KALDLDSSCKEA 120
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 53.1 bits (126), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADM 130
+ +SN C++ +G ++ ++ TKALEL P Y K L+RRA A+E L F +A+ D+
Sbjct: 40 VFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDL 96
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 51.6 bits (122), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%)
Query: 65 APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
A E+ ++ NR + KLG + ++++C +A+ ++P Y KA R A L
Sbjct: 38 AIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHV 97
Query: 125 EAIADMKKILEFDPSNNQAKRTI 147
EA+A KK LE DP N K +
Sbjct: 98 EAVAYYKKALELDPDNETYKSNL 120
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 34/60 (56%)
Query: 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA 143
+K+ FE ++ KA+ELNP RA A+ KL ++ A+ D ++ + DP+ ++A
Sbjct: 23 MKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKA 82
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 62/147 (42%), Gaps = 36/147 (24%)
Query: 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPA 65
A E K +GN+ F +G Y A+ Y A++
Sbjct: 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD----------------------------- 43
Query: 66 PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125
PE A I +SNR C KL +F+ ++ +C + L+ ++K IR+A + + +
Sbjct: 44 PENA----ILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSK 99
Query: 126 AIADMKKILEFDPSNNQAK---RTILR 149
A + L+ DPSN +A+ R LR
Sbjct: 100 AQRAYEDALQVDPSNEEAREGVRNCLR 126
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 50.1 bits (118), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 56/127 (44%), Gaps = 1/127 (0%)
Query: 13 GNKLFAEGKYEEALLQYEVALRXXXXXXXXXXX-XXXXXKEGQSASEKKEVAPAPEMAEL 71
GN + +G Y+EA+ Y+ AL K+G + A E+
Sbjct: 8 GNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 67
Query: 72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMK 131
+ N G + K G ++E+I+ KALEL+P +A A+ K ++EAI +
Sbjct: 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127
Query: 132 KILEFDP 138
K LE DP
Sbjct: 128 KALELDP 134
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 78 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
N G + K G ++E+I+ KALEL+P +A A+ K ++EAI +K LE D
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 138 PSNNQAKRTILRKLKEMGN 156
P + +A + + G+
Sbjct: 66 PRSAEAWYNLGNAYYKQGD 84
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 33/135 (24%)
Query: 13 GNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAELR 72
GN + +G Y+EA+ Y+ AL P AE
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELY-----------------------------PNNAE-- 44
Query: 73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
N G + K G ++E+I+ KALEL P +A A+ K ++EAI +K
Sbjct: 45 --AWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 102
Query: 133 ILEFDPSNNQAKRTI 147
LE P+N +AK+ +
Sbjct: 103 ALELYPNNAEAKQNL 117
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%)
Query: 78 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
N G + K G ++E+I+ KALEL P +A A+ K ++EAI +K LE
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELY 73
Query: 138 PSNNQAKRTILRKLKEMGN 156
P+N +A + + G+
Sbjct: 74 PNNAEAWYNLGNAYYKQGD 92
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 33/127 (25%)
Query: 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPA 65
A E K +GN+LF KY EA Y G++ + VA
Sbjct: 9 AQELKEQGNRLFVGRKYPEAAACY-----------------------GRAITRNPLVA-- 43
Query: 66 PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125
+ ++NR +C+LK+ + E+++ +C +ALEL+ +KA + ++E ++E
Sbjct: 44 --------VYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDE 95
Query: 126 AIADMKK 132
AIA++++
Sbjct: 96 AIANLQR 102
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 88 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
K+ E+ +A+ NP RA + K++ E+A+AD ++ LE D
Sbjct: 24 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD 73
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 33/127 (25%)
Query: 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPA 65
A E K +GN+LF KY EA Y G++ + VA
Sbjct: 4 AQELKEQGNRLFVGRKYPEAAACY-----------------------GRAITRNPLVA-- 38
Query: 66 PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125
+ ++NR +C+LK+ + E+++ +C +ALEL+ +KA + ++E ++E
Sbjct: 39 --------VYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDE 90
Query: 126 AIADMKK 132
AIA++++
Sbjct: 91 AIANLQR 97
Score = 27.7 bits (60), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 88 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
K+ E+ +A+ NP RA + K++ E+A+AD ++ LE D
Sbjct: 19 KYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD 68
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%)
Query: 65 APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
A E+ +I + NR + +L+ + ++ + T+A+EL+ Y+K RRA ++ L F
Sbjct: 47 AIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIELDKKYIKGYYRRAASNMALGKFR 106
Query: 125 EAIADMKKILEFDPSNNQAK 144
A+ D + +++ P + AK
Sbjct: 107 AALRDYETVVKVKPHDKDAK 126
Score = 30.8 bits (68), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ 142
+ K +E +IK ++A+ELNP+ R+ A+ + E + A+ D + +E D
Sbjct: 31 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALNDATRAIELD----- 85
Query: 143 AKRTILRKLKEMG-NSILGRFGMSTDNFKAV 172
K+ I + N LG+F + +++ V
Sbjct: 86 -KKYIKGYYRRAASNMALGKFRAALRDYETV 115
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%)
Query: 78 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
N G + K G ++E+I+ KALEL+P +A A+ K ++EAI +K LE D
Sbjct: 8 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 67
Query: 138 P 138
P
Sbjct: 68 P 68
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 76 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
+SNR KL F E+I +C KA+E +P +++A IR+A A ++ + A+
Sbjct: 41 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 92
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS 139
+ + ++K T+ ++ P + RA A KL F EAIAD K +E DP+
Sbjct: 14 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%)
Query: 65 APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
A E+ +I + NR + +L+ + ++ + T+A+EL+ Y+K RRA ++ L F
Sbjct: 39 AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 98
Query: 125 EAIADMKKILEFDPSNNQAK 144
A+ D + +++ P + AK
Sbjct: 99 AALRDYETVVKVKPHDKDAK 118
Score = 31.2 bits (69), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ 142
+ K +E +IK ++A+ELNP+ R+ A+ + E + A+ D + +E D
Sbjct: 23 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD----- 77
Query: 143 AKRTILRKLKEMG-NSILGRFGMSTDNFKAV 172
K+ I + N LG+F + +++ V
Sbjct: 78 -KKYIKGYYRRAASNMALGKFRAALRDYETV 107
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 6/85 (7%)
Query: 65 APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
APE A +SNR KL F E+I +C KA+E +P +++A IR+A A ++ +
Sbjct: 169 APEDAR----GYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYA 224
Query: 125 EAIA--DMKKILEFDPSNNQAKRTI 147
A+ D + + + +N + R I
Sbjct: 225 SALETLDAARTKDAEVNNGSSAREI 249
Score = 31.2 bits (69), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%)
Query: 80 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS 139
G + + ++K T+ ++ P + RA A KL F EAIAD K +E DP+
Sbjct: 146 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 44/80 (55%)
Query: 65 APEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124
A E+ +I + NR + +L+ + ++ + T+A+EL+ Y+K RRA ++ L F
Sbjct: 32 AIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91
Query: 125 EAIADMKKILEFDPSNNQAK 144
A+ D + +++ P + AK
Sbjct: 92 AALRDYETVVKVKPHDKDAK 111
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 30/55 (54%)
Query: 83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
+ K +E +IK ++A+ELNP+ R+ A+ + E + A+ D + +E D
Sbjct: 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD 70
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 66 PEMAE--LRS---ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
P +AE +RS ICH CF K K E+I+ C++ L++ P + AL RAEA+
Sbjct: 288 PSIAEYTVRSKERICH-----CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE 342
Query: 121 EHFEEAIADMKKILEFDPSNNQAK 144
E ++EAI D + E + ++ Q +
Sbjct: 343 EMYDEAIQDYETAQEHNENDQQIR 366
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%)
Query: 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKI 133
I + R FL +GK + ++ + TK ++L + A ++R K +EA D KK+
Sbjct: 61 IAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 120
Query: 134 LEFDPSNNQAK 144
L+ +PS N+ K
Sbjct: 121 LKSNPSENEEK 131
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 4/98 (4%)
Query: 59 KKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHE 118
++ +A AP+ ++ ++ G+ ++++ K++ ++ K E NP R A +
Sbjct: 66 ERSIADAPDNIKVATVL----GLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALD 121
Query: 119 KLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN 156
L F+EAI K L P+ + R I ++MG+
Sbjct: 122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGS 159
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%)
Query: 80 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137
G+ LG+F+E+I AL L P K A ++E++ EEA+ KK E D
Sbjct: 117 GVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGSHEEALPHFKKANELD 174
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 66 PEMAE--LRS---ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
P +AE +RS ICH CF K K E+I+ C++ L+ P + AL RAEA+
Sbjct: 288 PSIAEYTVRSKERICH-----CFSKDEKPVEAIRVCSEVLQXEPDNVNALKDRAEAYLIE 342
Query: 121 EHFEEAIADMKKILEFDPSNNQAK 144
E ++EAI D + E + ++ Q +
Sbjct: 343 EXYDEAIQDYETAQEHNENDQQIR 366
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%)
Query: 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKI 133
I + R FL GK + ++ + TK ++L + A ++R K +EA D KK+
Sbjct: 61 IAYYRRATVFLAXGKSKAALPDLTKVIQLKXDFTAARLQRGHLLLKQGKLDEAEDDFKKV 120
Query: 134 LEFDPSNNQAK 144
L+ +PS N+ K
Sbjct: 121 LKSNPSENEEK 131
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 12 EGNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAEL 71
EGN+L+ EG +EA +Y A+ + KE +PE +L
Sbjct: 20 EGNRLYREGHVKEAAAKYYDAIACLKNL------------------QMKEQPGSPEWIQL 61
Query: 72 RSICHS---NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 128
N C L + ++ E + C+ L +KA +R +AH + + +EA A
Sbjct: 62 DQQITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQA 121
Query: 129 DMKKILEFDPS 139
D K+LE DP+
Sbjct: 122 DFAKVLELDPA 132
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 46/97 (47%), Gaps = 4/97 (4%)
Query: 59 KKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHE 118
++ +A AP+ ++ ++ G+ ++++ K++ ++ K E NP R A +
Sbjct: 66 ERSLADAPDNVKVATVL----GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALD 121
Query: 119 KLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG 155
L F+EAI K L P+ + R I ++MG
Sbjct: 122 NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKI 133
+ +SNR + K G ++++ ++ K ++L P + K R+A A E L FEEA ++
Sbjct: 39 VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEG 98
Query: 134 LEFDPSNNQAKRTI 147
L+ + +N Q K +
Sbjct: 99 LKHEANNPQLKEGL 112
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 60 KEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK 119
+ +A AP+ ++ ++ G+ ++++ K++ ++ K E NP R A +
Sbjct: 67 RSLADAPDNVKVATVL----GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN 122
Query: 120 LEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG 155
L F+EAI K L P+ + R I ++MG
Sbjct: 123 LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 56/131 (42%), Gaps = 21/131 (16%)
Query: 12 EGNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAEL 71
EGN+L+ EG +EA +Y A+ + KE +PE +L
Sbjct: 14 EGNRLYREGHVKEAAAKYYDAIACLKNL------------------QMKEQPGSPEWIQL 55
Query: 72 RSICHS---NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 128
N C L + ++ E + C+ L +KA +R +AH + + +EA A
Sbjct: 56 DQQITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQA 115
Query: 129 DMKKILEFDPS 139
D K+LE DP+
Sbjct: 116 DFAKVLELDPA 126
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 66 PEMAE--LRS---ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL 120
P +AE +RS ICH CF K K E+I+ C++ L+ P + AL RAEA+
Sbjct: 265 PSVAEYTVRSKERICH-----CFSKDEKPVEAIRICSEVLQXEPDNVNALKDRAEAYLIE 319
Query: 121 EHFEEAIADMKKILEFDPSNNQAK 144
E ++EAI D + E + ++ Q +
Sbjct: 320 EXYDEAIQDYEAAQEHNENDQQIR 343
Score = 34.7 bits (78), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKI 133
I + R FL GK + ++ + TK + L + A ++R K +EA D KK+
Sbjct: 38 IAYYRRATVFLAXGKSKAALPDLTKVIALKXDFTAARLQRGHLLLKQGKLDEAEDDFKKV 97
Query: 134 LEFDPSNNQAK 144
L+ +PS + K
Sbjct: 98 LKSNPSEQEEK 108
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 40.0 bits (92), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 60 KEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK 119
+ +A AP+ ++ ++ G+ ++++ K++ ++ K E NP R A +
Sbjct: 67 RSLADAPDNVKVATVL----GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKN 122
Query: 120 LEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG 155
L F+EAI K L P+ + R I ++MG
Sbjct: 123 LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 24/143 (16%)
Query: 13 GNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAEL- 71
GN+LF + Y+EA+ Y AL K G+ PE EL
Sbjct: 18 GNELFVQKDYKEAIDAYRDAL-------TRLDTLILREKPGE-----------PEWVELD 59
Query: 72 -RSI-CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAD 129
++I ++N C+L +G E+ + ++ L+ T KAL RRA+A +EA D
Sbjct: 60 RKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEED 119
Query: 130 MKKILEFDPSNNQAKRTILRKLK 152
+K +L P+ A + R++K
Sbjct: 120 LKLLLRNHPA---AASVVAREMK 139
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 32.3 bits (72), Expect = 0.14, Method: Composition-based stats.
Identities = 26/120 (21%), Positives = 49/120 (40%), Gaps = 33/120 (27%)
Query: 19 EGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPAPEMAELRSICHSN 78
+GK +EAL+ Y+ A+R +P A+ +SN
Sbjct: 56 QGKLQEALMHYKEAIRI-----------------------------SPTFAD----AYSN 82
Query: 79 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDP 138
G ++ + +++ T+A+++NP + A A H+ + EAIA + L+ P
Sbjct: 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142
Score = 32.3 bits (72), Expect = 0.16, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 59 KKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHE 118
+K + PE A HSN + GK +E++ +A+ ++PT+ A +
Sbjct: 33 RKALEVFPEFAA----AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK 88
Query: 119 KLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN 156
+++ + A+ + ++ +P+ A + K+ GN
Sbjct: 89 EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGN 126
Score = 32.3 bits (72), Expect = 0.16, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRT 146
G EE+++ KALE+ P + A A ++ +EA+ K+ + P+ A
Sbjct: 23 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 82
Query: 147 ILRKLKEM 154
+ LKEM
Sbjct: 83 MGNTLKEM 90
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 32.3 bits (72), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 66/151 (43%), Gaps = 20/151 (13%)
Query: 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRXXXXXXXXXXXXXXXXKEGQSASEKKEVAPA 65
A + K EGN+ F + + EA+++Y+ AL + Q +KK+
Sbjct: 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW---------DDQILLDKKK---- 84
Query: 66 PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125
+ C+ N C+ K + ++I +K L+++ +KAL + A+ EE
Sbjct: 85 ----NIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEE 140
Query: 126 AIADMKKILEFDPSNNQAKRTI---LRKLKE 153
A ++ K +P+N + + + KLKE
Sbjct: 141 AKENLYKAASLNPNNLDIRNSYELCVNKLKE 171
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132
++ SN G F G+ +I KA+ L+P ++ A I ++ F+ A+A +
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228
Query: 133 ILEFDPSN 140
L P++
Sbjct: 229 ALSLSPNH 236
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 4/90 (4%)
Query: 66 PEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125
P +AE +SN G + + G+ +E+I+ AL L P ++ I A A E
Sbjct: 64 PLLAE----AYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEG 119
Query: 126 AIADMKKILEFDPSNNQAKRTILRKLKEMG 155
A+ L+++P + + LK +G
Sbjct: 120 AVQAYVSALQYNPDLYCVRSDLGNLLKALG 149
Score = 29.6 bits (65), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRT 146
G EE+++ KALE+ P + A A ++ +EA+ K+ + P+ A
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN 378
Query: 147 ILRKLKEM 154
+ LKEM
Sbjct: 379 MGNTLKEM 386
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 31.2 bits (69), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMK-K 132
+ +SN+ + +KLG++ ++I+ C + L T I R++ +LE + A+ ++
Sbjct: 39 VGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI-RSKLQYRLELAQGAVGSVQIP 97
Query: 133 ILEFD 137
++E D
Sbjct: 98 VVEVD 102
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 30.8 bits (68), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 80 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127
G+ G + ESI KA++L+P K + + +A LE +EEA+
Sbjct: 13 GVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
>pdb|1IYG|A Chain A, Solution Structure Of Rsgi Ruh-001, A Fis1p-Like And Cgi-
135 Homologous Domain From A Mouse Cdna
Length = 133
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%), Gaps = 3/47 (6%)
Query: 114 AEAHEKLEHFEEAIADMKKILEFDPSNNQAK---RTILRKLKEMGNS 157
A + +L+ +E+A+ ++ +L+ +P NNQAK R I + +K+ G S
Sbjct: 85 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKSGPS 131
>pdb|1PC2|A Chain A, Solution Structure Of Human Mitochondria Fission Protein
Fis1
Length = 152
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 6/59 (10%)
Query: 114 AEAHEKLEHFEEAIADMKKILEFDPSNNQAK---RTILRKLKE---MGNSILGRFGMST 166
A + +L+ +E+A+ ++ +L+ +P NNQAK R I + +K+ +G +I+G +
Sbjct: 78 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKKDGLVGMAIVGGMALGV 136
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine
Decarboxylase
Length = 475
Score = 28.1 bits (61), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKIL 134
+ ++ E+I+E E+ P Y+K LI A A EK E +++ + D+++++
Sbjct: 17 IAEYLENIRERRVLPEVKPGYLKPLIPDA-APEKPEKWQDVMQDIERVI 64
>pdb|1K20|A Chain A, Inorganic Pyrophosphatase (Family Ii) From Streptococcus
Gordonii At 1.5 A Resolution
pdb|1K20|B Chain B, Inorganic Pyrophosphatase (Family Ii) From Streptococcus
Gordonii At 1.5 A Resolution
Length = 310
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 14/81 (17%)
Query: 63 APAPEMAELRSICHSNRGICFLKLG------KFEESIKECTKALELNPTYMK-ALIRRAE 115
A APE+AEL + G+ LK G EE I K ELN ++ A + +
Sbjct: 165 AIAPELAELAGVNLEEYGLAMLKAGTNLASKSAEELIDIDAKTFELNGNNVRVAQVNTVD 224
Query: 116 AHEKLEH-------FEEAIAD 129
E LE E+AIAD
Sbjct: 225 IAEVLERQAEIEAAIEKAIAD 245
>pdb|1NZN|A Chain A, Cytosolic Domain Of The Human Mitchondrial Fission Protein
Fis1 Adopts A Tpr Fold
Length = 126
Score = 26.9 bits (58), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 114 AEAHEKLEHFEEAIADMKKILEFDPSNNQAK 144
A + +L+ +E+A+ ++ +L+ +P NNQAK
Sbjct: 81 AVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 90 EESIKECTKALELNPTYMK-------ALIRRAEAHEKLEHFEEAIADMKK 132
EE++ +ALEL P Y++ + I E +EHF EA+ +K
Sbjct: 205 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 254
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 26.6 bits (57), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 90 EESIKECTKALELNPTYMK-------ALIRRAEAHEKLEHFEEAIADMKK 132
EE++ +ALEL P Y++ + I E +EHF EA+ +K
Sbjct: 228 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 277
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 26.6 bits (57), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 90 EESIKECTKALELNPTYMK-------ALIRRAEAHEKLEHFEEAIADMKK 132
EE++ +ALEL P Y++ + I E +EHF EA+ +K
Sbjct: 219 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 268
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 26.6 bits (57), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 7/50 (14%)
Query: 90 EESIKECTKALELNPTYMK-------ALIRRAEAHEKLEHFEEAIADMKK 132
EE++ +ALEL P Y++ + I E +EHF EA+ +K
Sbjct: 228 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 277
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 26.6 bits (57), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Query: 52 EGQSASEKKEVAPAPEM-------AELRSICHSNRGICFLKLGKFEESIKECTKALELNP 104
EG +A +KE + A ++ A I SNR + G+ E++ ++ A ++P
Sbjct: 17 EGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP 76
Query: 105 TYMKALIR 112
Y KA R
Sbjct: 77 KYSKAWSR 84
>pdb|1WPP|A Chain A, Structure Of Streptococcus Gordonii Inorganic
Pyrophosphatase
pdb|1WPP|B Chain B, Structure Of Streptococcus Gordonii Inorganic
Pyrophosphatase
Length = 311
Score = 26.6 bits (57), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 14/79 (17%)
Query: 65 APEMAELRSICHSNRGICFLKLG------KFEESIKECTKALELNPTYMK-ALIRRAEAH 117
APE+AEL + G+ LK G EE I K ELN ++ A + +
Sbjct: 168 APELAELAGVNLEEYGLAMLKAGTNLASKSAEELIDIDAKTFELNGNNVRVAQVNTVDIA 227
Query: 118 EKLEH-------FEEAIAD 129
E LE E+AIAD
Sbjct: 228 EVLERQAEIEAAIEKAIAD 246
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,671,661
Number of Sequences: 62578
Number of extensions: 156544
Number of successful extensions: 528
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 365
Number of HSP's gapped (non-prelim): 136
length of query: 186
length of database: 14,973,337
effective HSP length: 93
effective length of query: 93
effective length of database: 9,153,583
effective search space: 851283219
effective search space used: 851283219
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)