Query 044796
Match_columns 186
No_of_seqs 250 out of 1305
Neff 11.3
Searched_HMMs 46136
Date Fri Mar 29 06:50:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044796.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044796hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 99.9 1.3E-22 2.8E-27 150.5 11.8 165 5-178 319-488 (966)
2 KOG4626 O-linked N-acetylgluco 99.9 1.7E-22 3.7E-27 149.8 11.3 163 5-176 251-418 (966)
3 KOG4234 TPR repeat-containing 99.9 5.2E-21 1.1E-25 124.0 15.0 156 2-185 91-264 (271)
4 TIGR00990 3a0801s09 mitochondr 99.9 1.5E-21 3.2E-26 152.0 14.6 166 5-175 330-496 (615)
5 KOG1126 DNA-binding cell divis 99.9 2.6E-22 5.7E-27 149.2 9.5 164 4-172 419-583 (638)
6 KOG0553 TPR repeat-containing 99.9 4.4E-21 9.5E-26 131.3 14.3 119 2-153 77-195 (304)
7 PRK15359 type III secretion sy 99.9 1.7E-19 3.7E-24 115.4 15.6 116 6-154 24-139 (144)
8 COG3063 PilF Tfp pilus assembl 99.8 1.1E-19 2.4E-24 120.2 11.6 161 3-172 32-199 (250)
9 KOG1155 Anaphase-promoting com 99.8 1.1E-19 2.5E-24 130.7 10.9 163 6-173 330-493 (559)
10 PRK09782 bacteriophage N4 rece 99.8 4.6E-19 9.9E-24 142.3 14.3 171 8-184 544-715 (987)
11 KOG0547 Translocase of outer m 99.8 1.8E-19 3.8E-24 130.5 10.2 169 5-178 325-494 (606)
12 PRK15359 type III secretion sy 99.8 3.2E-19 6.9E-24 114.2 9.4 98 76-178 27-124 (144)
13 TIGR00990 3a0801s09 mitochondr 99.8 1.3E-18 2.7E-23 135.7 13.7 170 5-174 364-536 (615)
14 TIGR02521 type_IV_pilW type IV 99.8 2.9E-18 6.4E-23 117.9 13.9 166 4-174 29-197 (234)
15 KOG1125 TPR repeat-containing 99.8 4.9E-19 1.1E-23 130.3 9.4 167 2-175 315-527 (579)
16 KOG1126 DNA-binding cell divis 99.8 1.3E-18 2.8E-23 129.8 11.1 166 6-176 455-621 (638)
17 PRK11189 lipoprotein NlpI; Pro 99.8 1E-17 2.2E-22 119.6 15.1 131 4-173 62-192 (296)
18 PRK12370 invasion protein regu 99.8 5.6E-18 1.2E-22 130.4 12.9 164 5-173 294-468 (553)
19 PRK10370 formate-dependent nit 99.8 1.2E-17 2.6E-22 112.2 12.6 99 72-175 72-173 (198)
20 PRK15174 Vi polysaccharide exp 99.8 1.3E-17 2.9E-22 130.4 13.5 163 11-178 217-384 (656)
21 PRK12370 invasion protein regu 99.8 2.6E-17 5.7E-22 126.7 14.5 157 8-173 260-433 (553)
22 PLN03088 SGT1, suppressor of 99.8 6.3E-17 1.4E-21 118.0 15.5 117 7-156 3-119 (356)
23 PRK15363 pathogenicity island 99.7 2.1E-16 4.5E-21 100.0 14.3 104 4-140 33-136 (157)
24 TIGR02521 type_IV_pilW type IV 99.7 1.3E-16 2.8E-21 109.7 13.9 163 5-172 64-229 (234)
25 PRK09782 bacteriophage N4 rece 99.7 7.1E-17 1.5E-21 129.9 13.5 156 12-173 582-738 (987)
26 PRK15174 Vi polysaccharide exp 99.7 7.7E-17 1.7E-21 126.1 13.3 95 74-173 247-345 (656)
27 KOG1155 Anaphase-promoting com 99.7 1E-16 2.2E-21 115.7 12.5 164 5-173 363-534 (559)
28 TIGR02552 LcrH_SycD type III s 99.7 8.1E-16 1.8E-20 97.7 15.0 111 5-148 16-126 (135)
29 TIGR02917 PEP_TPR_lipo putativ 99.7 2.7E-16 5.8E-21 126.8 15.8 166 7-177 23-224 (899)
30 KOG0543 FKBP-type peptidyl-pro 99.7 2E-16 4.3E-21 112.8 13.2 135 2-154 204-338 (397)
31 PRK15179 Vi polysaccharide bio 99.7 1.8E-16 3.9E-21 123.4 14.2 133 5-175 85-217 (694)
32 KOG1125 TPR repeat-containing 99.7 5.1E-17 1.1E-21 119.8 10.3 170 10-184 289-502 (579)
33 TIGR03302 OM_YfiO outer membra 99.7 2.1E-16 4.6E-21 109.5 12.6 164 4-173 31-230 (235)
34 TIGR02917 PEP_TPR_lipo putativ 99.7 2E-16 4.3E-21 127.5 13.6 166 5-177 702-868 (899)
35 PRK11447 cellulose synthase su 99.7 4.9E-16 1.1E-20 128.6 15.8 162 6-172 385-555 (1157)
36 PF13429 TPR_15: Tetratricopep 99.7 2.1E-16 4.5E-21 112.3 11.8 130 6-173 146-275 (280)
37 PRK11447 cellulose synthase su 99.7 4.4E-16 9.6E-21 128.8 14.8 164 6-174 495-699 (1157)
38 KOG0553 TPR repeat-containing 99.7 2.7E-16 5.9E-21 108.0 11.2 152 21-178 30-181 (304)
39 TIGR02552 LcrH_SycD type III s 99.7 3.2E-16 6.8E-21 99.6 10.8 99 74-177 18-116 (135)
40 KOG0548 Molecular co-chaperone 99.7 7.7E-16 1.7E-20 112.8 13.8 117 4-153 356-472 (539)
41 PRK11788 tetratricopeptide rep 99.7 4.3E-16 9.4E-21 115.5 12.7 162 7-173 108-276 (389)
42 PRK11189 lipoprotein NlpI; Pro 99.7 7.6E-16 1.7E-20 110.0 13.2 101 72-177 63-163 (296)
43 KOG0547 Translocase of outer m 99.7 1.5E-16 3.2E-21 115.6 7.4 160 5-173 393-564 (606)
44 PLN02789 farnesyltranstransfer 99.7 1.3E-15 2.9E-20 109.0 12.2 161 15-177 46-216 (320)
45 PLN02789 farnesyltranstransfer 99.7 1.7E-15 3.7E-20 108.5 12.7 167 4-175 69-250 (320)
46 PRK10370 formate-dependent nit 99.7 4.5E-15 9.7E-20 99.8 13.8 127 19-145 52-182 (198)
47 PRK15363 pathogenicity island 99.7 1E-15 2.2E-20 96.9 10.0 98 73-175 35-132 (157)
48 KOG1129 TPR repeat-containing 99.7 4.1E-16 9E-21 108.5 8.4 171 6-181 290-464 (478)
49 PRK11788 tetratricopeptide rep 99.7 6.8E-15 1.5E-19 109.1 15.2 163 6-173 35-207 (389)
50 cd05804 StaR_like StaR_like; a 99.7 7.1E-15 1.5E-19 107.8 14.5 165 5-175 42-215 (355)
51 KOG0548 Molecular co-chaperone 99.6 5.6E-15 1.2E-19 108.4 12.6 161 6-178 298-458 (539)
52 TIGR02795 tol_pal_ybgF tol-pal 99.6 3.7E-14 8.1E-19 87.9 13.8 110 6-145 2-114 (119)
53 PF13429 TPR_15: Tetratricopep 99.6 2.8E-16 6E-21 111.7 3.5 169 6-179 44-247 (280)
54 COG5010 TadD Flp pilus assembl 99.6 4E-14 8.6E-19 95.7 13.6 129 7-173 101-229 (257)
55 PF13414 TPR_11: TPR repeat; P 99.6 4.6E-15 1E-19 83.1 7.9 66 73-138 3-69 (69)
56 KOG1173 Anaphase-promoting com 99.6 8.9E-15 1.9E-19 108.0 10.8 165 4-177 310-522 (611)
57 PRK10049 pgaA outer membrane p 99.6 2.4E-14 5.1E-19 114.3 14.1 162 12-178 278-459 (765)
58 KOG1173 Anaphase-promoting com 99.6 2E-15 4.4E-20 111.3 7.4 139 10-149 283-422 (611)
59 PRK02603 photosystem I assembl 99.6 1.3E-13 2.7E-18 91.1 14.6 107 4-140 33-153 (172)
60 COG3063 PilF Tfp pilus assembl 99.6 1.5E-14 3.2E-19 96.1 9.9 95 74-173 70-166 (250)
61 PRK10049 pgaA outer membrane p 99.6 1.2E-13 2.5E-18 110.4 15.1 156 12-173 21-177 (765)
62 CHL00033 ycf3 photosystem I as 99.6 4.8E-13 1E-17 88.0 15.5 108 4-141 33-154 (168)
63 PRK14574 hmsH outer membrane p 99.6 1E-13 2.3E-18 110.0 13.4 168 4-177 32-200 (822)
64 cd00189 TPR Tetratricopeptide 99.6 1.9E-13 4.1E-18 80.8 11.5 99 8-139 2-100 (100)
65 COG5010 TadD Flp pilus assembl 99.6 1.8E-13 4E-18 92.6 12.2 152 19-176 46-199 (257)
66 PF13432 TPR_16: Tetratricopep 99.5 5.4E-14 1.2E-18 77.8 7.9 65 77-141 1-65 (65)
67 KOG2076 RNA polymerase III tra 99.5 3.3E-13 7.2E-18 104.3 14.7 168 6-178 139-312 (895)
68 PF13414 TPR_11: TPR repeat; P 99.5 7.4E-14 1.6E-18 78.2 8.4 67 5-104 2-69 (69)
69 KOG3060 Uncharacterized conser 99.5 3.9E-13 8.5E-18 90.6 13.0 149 8-156 88-240 (289)
70 PLN03088 SGT1, suppressor of 99.5 7.6E-14 1.6E-18 102.0 10.2 98 76-178 5-102 (356)
71 KOG4162 Predicted calmodulin-b 99.5 2.8E-13 6.1E-18 103.3 13.0 130 7-174 651-782 (799)
72 COG4783 Putative Zn-dependent 99.5 4.4E-13 9.5E-18 97.8 13.4 136 5-173 305-452 (484)
73 KOG3060 Uncharacterized conser 99.5 5.6E-13 1.2E-17 89.9 12.9 165 11-177 57-222 (289)
74 KOG2002 TPR-containing nuclear 99.5 3.6E-14 7.7E-19 110.4 8.1 170 6-176 199-410 (1018)
75 KOG0550 Molecular chaperone (D 99.5 6E-14 1.3E-18 100.3 8.6 144 5-149 202-362 (486)
76 KOG4648 Uncharacterized conser 99.5 1.4E-13 3.1E-18 96.7 10.3 113 4-149 95-207 (536)
77 KOG0624 dsRNA-activated protei 99.5 5.3E-13 1.1E-17 93.9 12.3 164 4-172 36-215 (504)
78 PRK15331 chaperone protein Sic 99.5 1.5E-12 3.2E-17 83.0 13.2 108 5-146 36-143 (165)
79 PF12895 Apc3: Anaphase-promot 99.5 1.7E-13 3.7E-18 79.7 8.4 84 18-133 1-84 (84)
80 KOG2003 TPR repeat-containing 99.5 6.6E-14 1.4E-18 101.8 7.6 171 6-181 490-663 (840)
81 KOG0550 Molecular chaperone (D 99.5 6.2E-13 1.3E-17 95.2 12.1 109 3-116 246-363 (486)
82 PF09976 TPR_21: Tetratricopep 99.5 2.8E-12 6.1E-17 82.3 13.8 134 4-173 9-145 (145)
83 cd00189 TPR Tetratricopeptide 99.5 5.2E-13 1.1E-17 78.8 9.7 97 75-176 2-98 (100)
84 KOG2002 TPR-containing nuclear 99.5 5.9E-13 1.3E-17 103.8 11.9 152 6-157 600-766 (1018)
85 PRK10803 tol-pal system protei 99.5 5.1E-12 1.1E-16 88.3 15.2 110 6-145 142-255 (263)
86 KOG1129 TPR repeat-containing 99.5 3E-13 6.5E-18 94.5 8.5 158 10-173 227-385 (478)
87 TIGR02795 tol_pal_ybgF tol-pal 99.5 9.2E-13 2E-17 81.6 9.9 97 74-175 3-105 (119)
88 KOG1128 Uncharacterized conser 99.5 1E-12 2.2E-17 99.8 11.3 166 4-180 422-587 (777)
89 PRK15179 Vi polysaccharide bio 99.5 2.4E-12 5.1E-17 100.7 13.2 101 73-178 86-186 (694)
90 KOG1156 N-terminal acetyltrans 99.5 1.9E-12 4E-17 97.3 11.9 160 6-170 7-167 (700)
91 CHL00033 ycf3 photosystem I as 99.4 1.6E-12 3.6E-17 85.5 10.4 106 72-177 34-151 (168)
92 PRK02603 photosystem I assembl 99.4 1.6E-12 3.4E-17 85.9 10.2 110 71-180 33-154 (172)
93 PF12895 Apc3: Anaphase-promot 99.4 1.5E-13 3.2E-18 80.0 4.7 81 86-172 2-84 (84)
94 COG2956 Predicted N-acetylgluc 99.4 5.8E-12 1.3E-16 87.8 12.9 164 5-173 106-276 (389)
95 TIGR03302 OM_YfiO outer membra 99.4 2.3E-12 4.9E-17 89.4 11.1 134 6-139 70-235 (235)
96 PF13432 TPR_16: Tetratricopep 99.4 1.6E-12 3.4E-17 71.8 8.2 65 10-107 1-65 (65)
97 PRK10153 DNA-binding transcrip 99.4 6.1E-12 1.3E-16 95.7 13.6 137 5-142 338-488 (517)
98 KOG1174 Anaphase-promoting com 99.4 1.4E-12 3.1E-17 93.6 9.3 149 5-153 231-380 (564)
99 KOG2003 TPR repeat-containing 99.4 8.2E-12 1.8E-16 91.1 12.9 153 4-156 556-709 (840)
100 KOG1840 Kinesin light chain [C 99.4 6.2E-12 1.3E-16 94.5 12.6 140 4-173 239-394 (508)
101 COG2956 Predicted N-acetylgluc 99.4 5E-12 1.1E-16 88.2 10.8 102 72-178 140-246 (389)
102 COG4235 Cytochrome c biogenesi 99.4 1.1E-11 2.4E-16 85.9 12.0 99 72-175 155-256 (287)
103 KOG0495 HAT repeat protein [RN 99.4 5.3E-12 1.2E-16 95.3 11.2 167 9-181 587-756 (913)
104 KOG1127 TPR repeat-containing 99.4 2.1E-12 4.5E-17 101.2 9.3 164 5-173 491-657 (1238)
105 PF12688 TPR_5: Tetratrico pep 99.4 2.5E-11 5.5E-16 74.6 12.1 99 7-135 2-103 (120)
106 KOG0624 dsRNA-activated protei 99.4 3.3E-11 7.2E-16 85.0 13.7 179 4-182 104-305 (504)
107 PF13512 TPR_18: Tetratricopep 99.4 5E-11 1.1E-15 74.5 13.1 109 5-143 9-135 (142)
108 PF13525 YfiO: Outer membrane 99.4 4.9E-11 1.1E-15 80.8 14.2 139 5-173 4-168 (203)
109 PF14559 TPR_19: Tetratricopep 99.4 3.1E-12 6.6E-17 71.3 7.0 66 84-149 2-67 (68)
110 PF13371 TPR_9: Tetratricopept 99.4 5.7E-12 1.2E-16 71.3 8.2 69 80-148 2-70 (73)
111 COG1729 Uncharacterized protei 99.4 5.6E-11 1.2E-15 81.6 14.3 110 7-146 142-254 (262)
112 KOG1174 Anaphase-promoting com 99.4 2E-11 4.2E-16 87.9 12.4 166 6-177 300-502 (564)
113 PRK11906 transcriptional regul 99.4 2.3E-11 5E-16 89.2 12.0 155 8-171 257-432 (458)
114 PRK10866 outer membrane biogen 99.3 1.6E-10 3.4E-15 80.3 15.2 139 5-173 31-202 (243)
115 KOG1128 Uncharacterized conser 99.3 4.4E-12 9.6E-17 96.5 7.8 129 7-173 486-614 (777)
116 KOG4555 TPR repeat-containing 99.3 2E-10 4.3E-15 70.2 13.4 122 4-158 41-166 (175)
117 KOG4162 Predicted calmodulin-b 99.3 2.4E-11 5.2E-16 93.0 11.4 105 5-142 683-789 (799)
118 TIGR00540 hemY_coli hemY prote 99.3 3.3E-11 7.2E-16 90.0 11.9 132 5-173 262-397 (409)
119 PRK10747 putative protoheme IX 99.3 7.6E-11 1.6E-15 87.8 13.2 156 11-172 158-387 (398)
120 TIGR00540 hemY_coli hemY prote 99.3 1.3E-10 2.8E-15 86.9 14.4 141 2-142 80-222 (409)
121 PF09295 ChAPs: ChAPs (Chs5p-A 99.3 1.3E-10 2.7E-15 85.4 13.7 115 17-172 180-294 (395)
122 PF12569 NARP1: NMDA receptor- 99.3 2.1E-10 4.6E-15 87.1 15.3 166 3-173 35-289 (517)
123 PRK14720 transcript cleavage f 99.3 5.1E-11 1.1E-15 94.6 11.8 133 4-153 29-162 (906)
124 PRK15331 chaperone protein Sic 99.3 3.2E-11 7E-16 77.0 8.6 97 73-174 37-133 (165)
125 COG4235 Cytochrome c biogenesi 99.3 2.7E-10 5.8E-15 79.2 13.6 108 4-144 154-264 (287)
126 PF09976 TPR_21: Tetratricopep 99.3 2.3E-10 4.9E-15 73.5 12.0 98 6-134 48-145 (145)
127 PRK10803 tol-pal system protei 99.3 6.2E-11 1.3E-15 82.9 10.0 97 73-174 142-245 (263)
128 KOG1840 Kinesin light chain [C 99.3 2.4E-10 5.1E-15 86.2 13.0 140 4-173 281-436 (508)
129 PRK10747 putative protoheme IX 99.2 7.4E-10 1.6E-14 82.5 15.0 133 2-172 80-213 (398)
130 cd05804 StaR_like StaR_like; a 99.2 1.2E-10 2.6E-15 85.5 10.6 166 4-175 4-177 (355)
131 PF14559 TPR_19: Tetratricopep 99.2 6.9E-11 1.5E-15 65.8 7.0 68 16-116 1-68 (68)
132 KOG2076 RNA polymerase III tra 99.2 7.2E-11 1.6E-15 91.8 8.9 107 74-185 140-246 (895)
133 KOG4642 Chaperone-dependent E3 99.2 9.6E-11 2.1E-15 78.6 8.3 100 4-136 8-107 (284)
134 PF12688 TPR_5: Tetratrico pep 99.2 9E-11 2E-15 72.1 7.6 95 74-173 2-102 (120)
135 KOG0551 Hsp90 co-chaperone CNS 99.2 2.7E-10 5.8E-15 79.9 10.6 110 3-141 78-187 (390)
136 KOG0545 Aryl-hydrocarbon recep 99.2 8.6E-10 1.9E-14 74.5 12.5 119 2-143 174-300 (329)
137 PF13424 TPR_12: Tetratricopep 99.2 1.8E-10 4E-15 65.9 7.9 73 4-102 3-75 (78)
138 PF13371 TPR_9: Tetratricopept 99.2 2.5E-10 5.3E-15 64.5 8.1 70 13-115 2-71 (73)
139 PF13424 TPR_12: Tetratricopep 99.2 1.9E-10 4.2E-15 65.8 7.4 67 70-136 2-75 (78)
140 KOG0495 HAT repeat protein [RN 99.2 7.8E-10 1.7E-14 84.0 12.3 175 7-181 652-854 (913)
141 PLN03098 LPA1 LOW PSII ACCUMUL 99.2 2E-10 4.4E-15 84.3 8.4 70 68-137 70-142 (453)
142 KOG0376 Serine-threonine phosp 99.2 9.1E-11 2E-15 85.9 6.6 116 4-152 2-117 (476)
143 COG4785 NlpI Lipoprotein NlpI, 99.2 3.9E-10 8.4E-15 74.9 8.7 107 4-143 63-169 (297)
144 PRK14574 hmsH outer membrane p 99.1 2.1E-09 4.5E-14 86.0 14.0 143 11-156 73-218 (822)
145 KOG0543 FKBP-type peptidyl-pro 99.1 4.6E-10 1E-14 80.8 9.1 102 73-179 208-324 (397)
146 PF06552 TOM20_plant: Plant sp 99.1 1.9E-09 4.1E-14 69.7 10.4 104 21-150 6-123 (186)
147 PF12569 NARP1: NMDA receptor- 99.1 6.5E-09 1.4E-13 79.2 14.2 164 4-176 2-258 (517)
148 COG4783 Putative Zn-dependent 99.1 1E-08 2.2E-13 75.5 13.7 114 7-153 341-454 (484)
149 PLN03098 LPA1 LOW PSII ACCUMUL 99.0 5.5E-10 1.2E-14 82.0 5.9 69 102-175 70-141 (453)
150 KOG1156 N-terminal acetyltrans 99.0 5.5E-09 1.2E-13 79.1 11.0 90 9-102 78-172 (700)
151 PF06552 TOM20_plant: Plant sp 99.0 8.2E-10 1.8E-14 71.4 5.7 96 88-183 6-119 (186)
152 KOG4234 TPR repeat-containing 99.0 2.3E-09 4.9E-14 70.5 7.7 99 74-177 96-199 (271)
153 KOG2376 Signal recognition par 99.0 1.3E-08 2.8E-13 76.5 12.5 157 7-172 13-201 (652)
154 PF14938 SNAP: Soluble NSF att 99.0 3.8E-09 8.3E-14 75.2 9.4 136 5-173 34-182 (282)
155 PF04733 Coatomer_E: Coatomer 99.0 1.5E-08 3.3E-13 72.1 12.0 153 10-172 106-262 (290)
156 KOG3785 Uncharacterized conser 99.0 3.2E-08 7E-13 70.6 13.3 145 10-154 61-232 (557)
157 KOG4648 Uncharacterized conser 99.0 5.2E-10 1.1E-14 79.2 4.4 98 76-178 100-197 (536)
158 PRK11906 transcriptional regul 99.0 3.5E-08 7.7E-13 72.9 13.7 82 87-173 318-399 (458)
159 PF14938 SNAP: Soluble NSF att 99.0 3E-08 6.6E-13 70.6 13.0 141 5-173 74-223 (282)
160 COG1729 Uncharacterized protei 99.0 7E-09 1.5E-13 71.4 9.2 94 76-174 144-243 (262)
161 PRK10866 outer membrane biogen 99.0 9.8E-08 2.1E-12 66.4 14.9 131 6-171 69-237 (243)
162 PF09295 ChAPs: ChAPs (Chs5p-A 99.0 1.3E-08 2.9E-13 74.9 11.1 98 6-136 200-297 (395)
163 PF13525 YfiO: Outer membrane 99.0 8.7E-08 1.9E-12 65.0 14.3 121 5-155 41-192 (203)
164 KOG1127 TPR repeat-containing 98.9 6.1E-09 1.3E-13 82.4 8.9 149 19-176 471-628 (1238)
165 KOG4642 Chaperone-dependent E3 98.9 2.9E-09 6.2E-14 71.7 5.3 95 74-173 11-105 (284)
166 PRK14720 transcript cleavage f 98.9 6E-08 1.3E-12 77.7 13.5 160 7-181 117-312 (906)
167 COG4700 Uncharacterized protei 98.9 1.2E-07 2.6E-12 61.9 12.1 125 6-169 89-216 (251)
168 PF13428 TPR_14: Tetratricopep 98.9 6.3E-09 1.4E-13 52.5 4.9 42 108-149 2-43 (44)
169 PF13512 TPR_18: Tetratricopep 98.9 4.6E-08 1E-12 61.4 9.5 101 73-173 10-126 (142)
170 KOG4340 Uncharacterized conser 98.8 1.7E-08 3.8E-13 70.4 7.5 158 7-171 45-203 (459)
171 PF13428 TPR_14: Tetratricopep 98.8 1.2E-08 2.7E-13 51.4 4.5 42 74-115 2-43 (44)
172 KOG4555 TPR repeat-containing 98.8 5.7E-08 1.2E-12 59.7 7.7 96 74-174 44-143 (175)
173 PRK10153 DNA-binding transcrip 98.8 8E-08 1.7E-12 73.6 10.4 109 59-177 366-484 (517)
174 KOG1308 Hsp70-interacting prot 98.8 4.6E-09 1E-13 74.1 3.2 104 3-139 111-214 (377)
175 COG4105 ComL DNA uptake lipopr 98.8 9.7E-07 2.1E-11 60.6 14.1 107 5-141 33-150 (254)
176 PF13431 TPR_17: Tetratricopep 98.8 9.8E-09 2.1E-13 48.5 2.9 33 95-127 1-33 (34)
177 COG3071 HemY Uncharacterized e 98.7 8E-07 1.7E-11 64.2 13.5 159 8-172 155-387 (400)
178 PLN03077 Protein ECB2; Provisi 98.7 2E-07 4.4E-12 76.1 12.0 168 7-181 555-730 (857)
179 KOG2376 Signal recognition par 98.7 7.2E-07 1.6E-11 67.4 13.2 160 6-173 46-251 (652)
180 PLN03081 pentatricopeptide (PP 98.7 1.4E-07 3E-12 75.4 9.6 159 8-173 393-555 (697)
181 PF00515 TPR_1: Tetratricopept 98.7 5.1E-08 1.1E-12 46.2 4.4 32 108-139 2-33 (34)
182 COG4785 NlpI Lipoprotein NlpI, 98.7 6.8E-08 1.5E-12 64.5 6.1 97 71-172 63-159 (297)
183 KOG2796 Uncharacterized conser 98.7 4.4E-07 9.5E-12 62.4 9.7 135 6-140 177-319 (366)
184 PF07719 TPR_2: Tetratricopept 98.6 1.1E-07 2.3E-12 45.0 4.9 33 108-140 2-34 (34)
185 PF00515 TPR_1: Tetratricopept 98.6 7.6E-08 1.6E-12 45.6 4.3 33 74-106 2-34 (34)
186 PF04733 Coatomer_E: Coatomer 98.6 1.2E-07 2.6E-12 67.6 7.0 161 9-179 69-234 (290)
187 PLN03081 pentatricopeptide (PP 98.6 1.2E-06 2.6E-11 70.1 13.0 161 8-177 191-391 (697)
188 COG3071 HemY Uncharacterized e 98.6 1.1E-06 2.3E-11 63.5 10.3 128 6-136 263-390 (400)
189 PF07719 TPR_2: Tetratricopept 98.6 2.2E-07 4.7E-12 43.9 4.8 34 6-39 1-34 (34)
190 COG4700 Uncharacterized protei 98.6 3.8E-06 8.2E-11 55.1 11.6 97 74-175 90-189 (251)
191 PF03704 BTAD: Bacterial trans 98.6 1.4E-05 3E-10 51.3 14.4 119 5-135 5-124 (146)
192 PLN03218 maturation of RBCL 1; 98.6 1.6E-06 3.4E-11 71.8 12.1 92 75-172 651-745 (1060)
193 PLN03218 maturation of RBCL 1; 98.5 3.2E-06 7E-11 70.0 13.2 93 73-172 684-780 (1060)
194 KOG1130 Predicted G-alpha GTPa 98.5 2.3E-07 4.9E-12 67.6 5.6 135 4-170 193-339 (639)
195 KOG3081 Vesicle coat complex C 98.5 8.9E-06 1.9E-10 56.1 12.7 139 8-153 110-253 (299)
196 PF13431 TPR_17: Tetratricopep 98.5 1.6E-07 3.4E-12 44.4 2.6 34 129-167 1-34 (34)
197 KOG1941 Acetylcholine receptor 98.4 1.7E-06 3.8E-11 62.1 8.5 130 8-137 124-276 (518)
198 COG0457 NrfG FOG: TPR repeat [ 98.4 2E-05 4.4E-10 53.4 13.5 92 76-172 170-262 (291)
199 KOG3785 Uncharacterized conser 98.4 2.6E-06 5.6E-11 61.2 8.6 87 15-133 31-117 (557)
200 PF05843 Suf: Suppressor of fo 98.4 1E-05 2.3E-10 57.6 11.8 115 8-155 3-121 (280)
201 KOG2471 TPR repeat-containing 98.4 2.1E-06 4.6E-11 63.9 7.7 123 6-153 240-381 (696)
202 KOG0376 Serine-threonine phosp 98.4 2.5E-07 5.4E-12 68.3 2.7 98 74-176 5-104 (476)
203 KOG0545 Aryl-hydrocarbon recep 98.4 5.9E-06 1.3E-10 56.4 8.7 99 74-177 179-295 (329)
204 KOG1130 Predicted G-alpha GTPa 98.3 1.7E-05 3.6E-10 58.2 11.2 121 7-154 236-368 (639)
205 COG3118 Thioredoxin domain-con 98.3 4.5E-05 9.8E-10 53.5 13.0 147 8-155 136-286 (304)
206 COG0457 NrfG FOG: TPR repeat [ 98.3 4.5E-05 9.8E-10 51.7 12.6 133 5-175 94-231 (291)
207 KOG1915 Cell cycle control pro 98.3 1.5E-05 3.2E-10 59.4 10.4 143 3-150 401-549 (677)
208 KOG0551 Hsp90 co-chaperone CNS 98.3 8.4E-06 1.8E-10 57.9 8.7 94 72-170 80-177 (390)
209 KOG2610 Uncharacterized conser 98.3 2.2E-05 4.7E-10 56.2 10.5 156 12-172 109-273 (491)
210 PF13181 TPR_8: Tetratricopept 98.3 2.3E-06 5.1E-11 40.3 4.0 31 108-138 2-32 (34)
211 PRK10941 hypothetical protein; 98.3 2.9E-05 6.2E-10 54.7 10.9 77 72-148 180-256 (269)
212 COG2976 Uncharacterized protei 98.2 7.7E-05 1.7E-09 49.3 11.9 69 71-140 124-192 (207)
213 PRK04841 transcriptional regul 98.2 3.9E-05 8.4E-10 63.4 13.2 163 5-172 451-638 (903)
214 PRK04841 transcriptional regul 98.2 6.9E-05 1.5E-09 61.9 14.6 96 73-173 491-600 (903)
215 KOG1586 Protein required for f 98.2 5.3E-05 1.2E-09 51.5 11.3 138 7-173 35-181 (288)
216 PF12968 DUF3856: Domain of Un 98.2 0.00018 3.8E-09 43.7 12.2 108 7-135 10-128 (144)
217 PLN03077 Protein ECB2; Provisi 98.2 3.4E-05 7.4E-10 63.4 12.3 101 72-178 553-658 (857)
218 KOG1585 Protein required for f 98.2 9.4E-05 2E-09 50.7 12.0 107 6-139 31-142 (308)
219 PF13181 TPR_8: Tetratricopept 98.2 4.3E-06 9.4E-11 39.4 4.2 33 6-38 1-33 (34)
220 COG4105 ComL DNA uptake lipopr 98.2 0.00038 8.1E-09 48.2 14.6 131 6-171 71-229 (254)
221 KOG1586 Protein required for f 98.2 0.00017 3.6E-09 49.2 12.4 115 5-147 73-194 (288)
222 KOG1310 WD40 repeat protein [G 98.2 2.1E-05 4.5E-10 59.3 9.0 106 4-142 372-480 (758)
223 KOG1915 Cell cycle control pro 98.1 0.0001 2.2E-09 55.2 11.9 141 7-153 74-219 (677)
224 PF10300 DUF3808: Protein of u 98.1 7.8E-05 1.7E-09 57.0 11.4 116 19-172 246-373 (468)
225 PF03704 BTAD: Bacterial trans 98.1 0.00011 2.3E-09 47.2 10.5 93 75-172 8-122 (146)
226 KOG3081 Vesicle coat complex C 98.1 0.00027 5.9E-09 49.0 12.4 135 10-144 141-279 (299)
227 PF05843 Suf: Suppressor of fo 98.1 4.2E-05 9.2E-10 54.6 8.7 97 74-175 2-99 (280)
228 KOG4507 Uncharacterized conser 98.1 1.4E-05 3E-10 60.9 6.4 106 13-150 614-719 (886)
229 KOG4340 Uncharacterized conser 98.1 2.9E-05 6.3E-10 54.7 7.5 124 10-136 82-207 (459)
230 PF04184 ST7: ST7 protein; In 98.0 0.00017 3.6E-09 54.3 11.4 135 14-148 176-337 (539)
231 PF13174 TPR_6: Tetratricopept 98.0 1.5E-05 3.2E-10 37.1 4.1 31 109-139 2-32 (33)
232 KOG2053 Mitochondrial inherita 98.0 0.00026 5.5E-09 56.6 12.8 95 12-139 15-109 (932)
233 PF14561 TPR_20: Tetratricopep 98.0 0.0001 2.2E-09 43.1 8.2 65 92-156 7-73 (90)
234 PF14853 Fis1_TPR_C: Fis1 C-te 98.0 8.4E-05 1.8E-09 38.7 6.9 40 109-148 3-42 (53)
235 KOG1941 Acetylcholine receptor 98.0 0.00012 2.6E-09 53.0 9.6 164 4-172 4-188 (518)
236 KOG1308 Hsp70-interacting prot 98.0 1.2E-06 2.6E-11 62.3 -0.3 90 78-172 119-208 (377)
237 PF10300 DUF3808: Protein of u 97.9 0.00019 4.2E-09 54.9 10.6 102 7-137 268-377 (468)
238 KOG1070 rRNA processing protei 97.9 0.00027 5.8E-09 59.1 11.5 95 74-173 1565-1661(1710)
239 PF13174 TPR_6: Tetratricopept 97.9 3.2E-05 7E-10 35.9 4.1 32 7-38 1-32 (33)
240 KOG3824 Huntingtin interacting 97.9 6.9E-05 1.5E-09 53.1 7.2 76 74-149 117-192 (472)
241 PF14853 Fis1_TPR_C: Fis1 C-te 97.9 0.0001 2.2E-09 38.4 5.9 43 74-116 2-44 (53)
242 KOG2047 mRNA splicing factor [ 97.8 0.0012 2.6E-08 51.4 13.4 170 7-178 388-582 (835)
243 PF09986 DUF2225: Uncharacteri 97.8 0.0012 2.6E-08 45.2 12.3 77 72-148 117-207 (214)
244 PF02259 FAT: FAT domain; Int 97.8 0.0021 4.6E-08 47.2 13.4 145 4-177 144-340 (352)
245 PF13176 TPR_7: Tetratricopept 97.7 8.7E-05 1.9E-09 35.4 4.0 29 8-36 1-29 (36)
246 PF13176 TPR_7: Tetratricopept 97.7 7E-05 1.5E-09 35.7 3.6 24 110-133 2-25 (36)
247 smart00028 TPR Tetratricopepti 97.7 8E-05 1.7E-09 33.9 3.9 31 109-139 3-33 (34)
248 PF04781 DUF627: Protein of un 97.7 0.0019 4.1E-08 38.9 10.2 95 12-136 2-107 (111)
249 KOG2396 HAT (Half-A-TPR) repea 97.7 0.0011 2.3E-08 50.0 11.1 76 74-149 106-182 (568)
250 KOG3824 Huntingtin interacting 97.7 0.00025 5.3E-09 50.4 7.3 80 4-116 114-193 (472)
251 COG2976 Uncharacterized protei 97.7 0.004 8.7E-08 41.4 12.1 96 74-175 90-188 (207)
252 PF09613 HrpB1_HrpK: Bacterial 97.6 0.0059 1.3E-07 39.4 14.5 108 5-148 9-117 (160)
253 PF09613 HrpB1_HrpK: Bacterial 97.6 0.0024 5.3E-08 41.2 10.4 84 74-157 11-94 (160)
254 KOG2053 Mitochondrial inherita 97.6 0.00039 8.5E-09 55.5 7.9 89 85-178 21-109 (932)
255 smart00028 TPR Tetratricopepti 97.6 0.00013 2.8E-09 33.2 3.4 32 74-105 2-33 (34)
256 KOG2796 Uncharacterized conser 97.5 0.00049 1.1E-08 47.9 6.7 98 71-173 210-313 (366)
257 COG4976 Predicted methyltransf 97.5 0.00029 6.2E-09 47.9 5.1 61 81-141 3-63 (287)
258 KOG4814 Uncharacterized conser 97.5 0.0042 9E-08 48.5 11.6 102 8-136 356-457 (872)
259 KOG2047 mRNA splicing factor [ 97.5 0.0049 1.1E-07 48.2 11.8 165 4-172 423-612 (835)
260 KOG1070 rRNA processing protei 97.5 0.0022 4.9E-08 53.9 10.6 162 6-173 1458-1627(1710)
261 KOG0546 HSP90 co-chaperone CPR 97.5 0.00029 6.3E-09 50.7 5.0 137 3-153 219-355 (372)
262 COG3118 Thioredoxin domain-con 97.4 0.0036 7.7E-08 44.3 10.2 92 76-172 137-262 (304)
263 PRK10941 hypothetical protein; 97.4 0.003 6.5E-08 44.7 9.9 76 8-116 183-258 (269)
264 PF15015 NYD-SP12_N: Spermatog 97.4 0.0038 8.3E-08 46.4 10.6 110 10-134 180-289 (569)
265 KOG2471 TPR repeat-containing 97.4 0.00023 4.9E-09 53.5 4.3 97 7-119 284-381 (696)
266 PF10602 RPN7: 26S proteasome 97.4 0.0087 1.9E-07 39.7 11.3 103 5-137 35-143 (177)
267 COG2912 Uncharacterized conser 97.4 0.0038 8.2E-08 43.8 9.8 77 72-148 180-256 (269)
268 KOG3364 Membrane protein invol 97.3 0.0066 1.4E-07 37.9 9.2 80 74-153 33-117 (149)
269 PF04184 ST7: ST7 protein; In 97.3 0.009 2E-07 45.4 11.6 106 8-144 261-383 (539)
270 PF10579 Rapsyn_N: Rapsyn N-te 97.3 0.006 1.3E-07 34.3 8.2 69 4-102 4-72 (80)
271 PF13281 DUF4071: Domain of un 97.3 0.02 4.2E-07 42.5 12.8 133 5-142 178-340 (374)
272 KOG2610 Uncharacterized conser 97.3 0.007 1.5E-07 43.8 10.2 117 14-134 145-274 (491)
273 KOG1550 Extracellular protein 97.3 0.0073 1.6E-07 47.5 11.4 138 5-148 243-403 (552)
274 KOG3364 Membrane protein invol 97.3 0.01 2.2E-07 37.2 9.3 43 72-114 70-112 (149)
275 PF08631 SPO22: Meiosis protei 97.2 0.02 4.2E-07 41.0 12.5 112 16-153 3-133 (278)
276 PF02259 FAT: FAT domain; Int 97.2 0.019 4.1E-07 42.3 12.2 131 5-139 183-341 (352)
277 KOG3617 WD40 and TPR repeat-co 97.2 0.0099 2.1E-07 48.0 10.8 146 12-172 806-993 (1416)
278 PF10602 RPN7: 26S proteasome 97.2 0.013 2.8E-07 39.0 10.0 101 73-173 36-140 (177)
279 TIGR02561 HrpB1_HrpK type III 97.2 0.015 3.3E-07 37.0 9.7 86 6-124 10-95 (153)
280 PF12968 DUF3856: Domain of Un 97.1 0.018 3.9E-07 35.3 9.5 98 74-172 8-126 (144)
281 PF13281 DUF4071: Domain of un 97.1 0.0087 1.9E-07 44.3 9.7 109 72-180 140-260 (374)
282 PF07079 DUF1347: Protein of u 97.1 0.035 7.5E-07 41.9 12.6 127 5-133 378-521 (549)
283 TIGR02561 HrpB1_HrpK type III 97.1 0.011 2.4E-07 37.6 8.8 84 74-157 11-94 (153)
284 PF14561 TPR_20: Tetratricopep 97.1 0.015 3.3E-07 34.0 8.7 53 72-124 21-75 (90)
285 KOG4814 Uncharacterized conser 97.1 0.007 1.5E-07 47.3 8.9 94 74-172 355-454 (872)
286 PF04781 DUF627: Protein of un 97.0 0.0081 1.8E-07 36.2 7.3 90 79-173 2-105 (111)
287 PF08424 NRDE-2: NRDE-2, neces 97.0 0.028 6.1E-07 41.1 11.4 104 27-151 6-109 (321)
288 KOG1310 WD40 repeat protein [G 96.9 0.0054 1.2E-07 46.9 7.1 90 79-173 380-472 (758)
289 KOG2300 Uncharacterized conser 96.9 0.082 1.8E-06 40.4 13.1 132 5-169 6-150 (629)
290 COG5191 Uncharacterized conser 96.9 0.0022 4.7E-08 45.8 4.8 78 72-149 106-184 (435)
291 PF08631 SPO22: Meiosis protei 96.9 0.087 1.9E-06 37.7 15.5 116 4-138 33-152 (278)
292 PF09986 DUF2225: Uncharacteri 96.9 0.028 6E-07 38.6 10.1 92 4-115 116-208 (214)
293 PF13374 TPR_10: Tetratricopep 96.9 0.0038 8.2E-08 30.4 4.3 29 108-136 3-31 (42)
294 COG4976 Predicted methyltransf 96.8 0.0031 6.7E-08 43.1 4.9 61 14-107 3-63 (287)
295 PF13374 TPR_10: Tetratricopep 96.8 0.0043 9.4E-08 30.1 4.3 33 6-38 2-34 (42)
296 KOG0530 Protein farnesyltransf 96.8 0.067 1.5E-06 37.6 11.0 80 74-153 78-159 (318)
297 PRK13184 pknD serine/threonine 96.8 0.035 7.6E-07 46.1 11.3 103 12-145 481-590 (932)
298 KOG0530 Protein farnesyltransf 96.8 0.012 2.7E-07 41.1 7.4 128 17-144 54-184 (318)
299 KOG1585 Protein required for f 96.7 0.045 9.8E-07 38.0 9.8 78 74-151 151-238 (308)
300 PF07079 DUF1347: Protein of u 96.7 0.18 3.9E-06 38.3 14.0 153 14-172 306-521 (549)
301 COG0790 FOG: TPR repeat, SEL1 96.7 0.12 2.5E-06 37.2 12.5 73 76-153 151-234 (292)
302 PF07720 TPR_3: Tetratricopept 96.7 0.01 2.3E-07 28.1 4.8 32 108-139 2-35 (36)
303 KOG4507 Uncharacterized conser 96.7 0.0034 7.3E-08 48.6 4.6 97 78-179 612-709 (886)
304 KOG2300 Uncharacterized conser 96.6 0.15 3.1E-06 39.1 12.4 103 5-133 45-153 (629)
305 PF04910 Tcf25: Transcriptiona 96.6 0.1 2.2E-06 38.8 11.8 120 5-135 39-167 (360)
306 KOG4151 Myosin assembly protei 96.5 0.036 7.8E-07 44.3 9.5 117 4-149 51-169 (748)
307 PF12862 Apc5: Anaphase-promot 96.5 0.033 7.1E-07 32.8 7.3 65 15-103 7-71 (94)
308 PF10373 EST1_DNA_bind: Est1 D 96.5 0.021 4.5E-07 40.7 7.6 62 92-153 1-62 (278)
309 KOG1550 Extracellular protein 96.4 0.17 3.7E-06 40.0 12.8 127 9-141 291-431 (552)
310 PRK15180 Vi polysaccharide bio 96.4 0.011 2.3E-07 45.0 5.6 127 15-141 298-425 (831)
311 COG3898 Uncharacterized membra 96.4 0.16 3.6E-06 37.8 11.3 27 74-100 189-215 (531)
312 PF15015 NYD-SP12_N: Spermatog 96.3 0.019 4.1E-07 42.8 6.6 88 80-172 183-288 (569)
313 COG0790 FOG: TPR repeat, SEL1 96.3 0.23 5E-06 35.7 12.2 154 14-174 49-219 (292)
314 PF11207 DUF2989: Protein of u 96.2 0.083 1.8E-06 35.6 8.6 70 90-165 123-197 (203)
315 PF12862 Apc5: Anaphase-promot 96.2 0.064 1.4E-06 31.6 7.3 59 82-140 7-74 (94)
316 COG3629 DnrI DNA-binding trans 96.2 0.087 1.9E-06 37.5 9.0 64 73-136 153-216 (280)
317 PF10579 Rapsyn_N: Rapsyn N-te 96.2 0.094 2E-06 29.6 7.9 61 74-134 7-70 (80)
318 PF07721 TPR_4: Tetratricopept 96.2 0.0091 2E-07 26.0 2.7 23 109-131 3-25 (26)
319 COG3914 Spy Predicted O-linked 96.2 0.13 2.8E-06 40.1 10.3 93 79-172 73-168 (620)
320 COG3898 Uncharacterized membra 96.1 0.38 8.3E-06 36.0 12.4 129 5-170 83-212 (531)
321 PF04910 Tcf25: Transcriptiona 96.1 0.19 4.2E-06 37.4 11.0 110 18-148 6-145 (360)
322 KOG0890 Protein kinase of the 96.1 0.2 4.4E-06 45.1 12.2 117 4-155 1668-1803(2382)
323 KOG2396 HAT (Half-A-TPR) repea 96.1 0.047 1E-06 41.7 7.5 84 91-179 89-173 (568)
324 PF10516 SHNi-TPR: SHNi-TPR; 96.1 0.015 3.3E-07 27.9 3.4 29 108-136 2-30 (38)
325 KOG3617 WD40 and TPR repeat-co 96.1 0.097 2.1E-06 42.7 9.5 62 74-135 913-995 (1416)
326 PF07720 TPR_3: Tetratricopept 96.0 0.037 8E-07 26.2 4.6 32 7-38 2-35 (36)
327 PF08424 NRDE-2: NRDE-2, neces 95.8 0.48 1E-05 34.8 12.4 119 22-173 47-181 (321)
328 KOG0529 Protein geranylgeranyl 95.8 0.36 7.7E-06 36.2 10.9 83 72-154 108-196 (421)
329 PF10516 SHNi-TPR: SHNi-TPR; 95.6 0.026 5.5E-07 27.1 3.2 32 6-37 1-32 (38)
330 KOG1914 mRNA cleavage and poly 95.6 0.6 1.3E-05 36.4 11.6 93 75-172 368-461 (656)
331 KOG1839 Uncharacterized protei 95.6 0.069 1.5E-06 45.2 7.3 138 5-173 931-1084(1236)
332 COG4649 Uncharacterized protei 95.5 0.42 9.2E-06 31.7 12.7 31 7-37 59-89 (221)
333 COG2912 Uncharacterized conser 95.4 0.23 4.9E-06 35.2 8.4 71 12-115 187-257 (269)
334 PF07721 TPR_4: Tetratricopept 95.3 0.024 5.3E-07 24.6 2.3 24 74-97 2-25 (26)
335 PF10345 Cohesin_load: Cohesin 95.2 0.92 2E-05 36.5 12.4 115 9-131 304-428 (608)
336 COG3914 Spy Predicted O-linked 95.2 0.84 1.8E-05 35.9 11.4 127 20-150 45-185 (620)
337 COG3629 DnrI DNA-binding trans 95.2 0.24 5.2E-06 35.4 8.1 77 89-172 137-213 (280)
338 PF10345 Cohesin_load: Cohesin 95.1 1.5 3.1E-05 35.4 15.1 140 4-172 57-205 (608)
339 PF11207 DUF2989: Protein of u 95.0 0.11 2.4E-06 35.0 5.9 61 3-93 138-198 (203)
340 PF10373 EST1_DNA_bind: Est1 D 95.0 0.16 3.5E-06 36.1 7.2 62 25-119 1-62 (278)
341 KOG0529 Protein geranylgeranyl 94.9 1.1 2.3E-05 33.8 11.0 66 88-153 90-157 (421)
342 COG3947 Response regulator con 94.9 0.27 5.8E-06 35.3 7.6 46 109-154 281-326 (361)
343 smart00386 HAT HAT (Half-A-TPR 94.9 0.12 2.5E-06 23.2 4.3 29 121-149 1-29 (33)
344 PF14863 Alkyl_sulf_dimr: Alky 94.5 0.43 9.3E-06 30.5 7.3 51 107-157 70-120 (141)
345 PF11817 Foie-gras_1: Foie gra 94.4 0.9 2E-05 32.0 9.6 60 74-133 179-244 (247)
346 KOG1914 mRNA cleavage and poly 94.3 0.32 6.9E-06 37.8 7.3 139 30-173 10-164 (656)
347 smart00386 HAT HAT (Half-A-TPR 94.2 0.18 4E-06 22.5 4.0 30 87-116 1-30 (33)
348 KOG0985 Vesicle coat protein c 94.1 1.3 2.8E-05 37.6 10.7 120 2-134 1100-1247(1666)
349 COG4455 ImpE Protein of avirul 94.0 1.3 2.8E-05 30.6 9.0 61 81-141 9-69 (273)
350 COG4649 Uncharacterized protei 93.8 1.3 2.8E-05 29.5 11.4 142 13-173 46-194 (221)
351 KOG0686 COP9 signalosome, subu 93.6 1 2.2E-05 34.0 8.5 111 7-147 151-277 (466)
352 COG5191 Uncharacterized conser 93.5 0.2 4.3E-06 36.3 4.7 76 6-113 107-182 (435)
353 KOG1258 mRNA processing protei 93.4 3.2 7E-05 32.8 13.2 165 8-173 299-468 (577)
354 PF14863 Alkyl_sulf_dimr: Alky 93.2 0.55 1.2E-05 30.0 6.1 51 74-124 71-121 (141)
355 COG3947 Response regulator con 93.2 0.46 1E-05 34.1 6.2 62 74-135 280-341 (361)
356 TIGR03504 FimV_Cterm FimV C-te 93.2 0.32 6.8E-06 24.2 3.9 25 111-135 3-27 (44)
357 KOG2041 WD40 repeat protein [G 92.9 1.2 2.7E-05 36.0 8.6 81 72-169 795-875 (1189)
358 KOG1839 Uncharacterized protei 92.8 1.1 2.5E-05 38.4 8.7 109 4-137 971-1087(1236)
359 PF04212 MIT: MIT (microtubule 92.7 0.45 9.7E-06 26.1 4.6 33 3-35 2-34 (69)
360 cd02682 MIT_AAA_Arch MIT: doma 92.6 0.43 9.4E-06 26.8 4.4 32 4-35 4-35 (75)
361 PRK15180 Vi polysaccharide bio 92.6 0.19 4E-06 38.6 3.7 51 85-135 301-351 (831)
362 COG2909 MalT ATP-dependent tra 92.5 4.9 0.00011 33.5 11.5 163 6-172 347-523 (894)
363 PF10255 Paf67: RNA polymerase 92.5 3.7 8.1E-05 31.2 10.6 68 10-102 126-193 (404)
364 COG2909 MalT ATP-dependent tra 92.4 5.7 0.00012 33.2 13.9 125 7-155 416-551 (894)
365 PF06957 COPI_C: Coatomer (COP 92.4 4 8.6E-05 31.2 11.2 122 4-142 202-335 (422)
366 PF11817 Foie-gras_1: Foie gra 92.2 2 4.3E-05 30.3 8.4 68 6-100 178-245 (247)
367 PF10255 Paf67: RNA polymerase 92.2 0.47 1E-05 35.8 5.4 60 75-135 124-192 (404)
368 smart00299 CLH Clathrin heavy 92.1 2 4.2E-05 27.1 10.4 118 16-151 17-135 (140)
369 PF04053 Coatomer_WDAD: Coatom 91.9 4.6 9.9E-05 31.3 10.5 46 85-135 330-375 (443)
370 TIGR03504 FimV_Cterm FimV C-te 91.8 0.56 1.2E-05 23.3 3.8 26 77-102 3-28 (44)
371 PF04053 Coatomer_WDAD: Coatom 91.8 2.7 5.8E-05 32.5 9.1 44 74-125 348-391 (443)
372 PF11846 DUF3366: Domain of un 91.7 1.4 2.9E-05 29.7 6.9 52 87-139 125-176 (193)
373 KOG2581 26S proteasome regulat 91.6 4.8 0.0001 30.6 12.9 67 74-140 210-280 (493)
374 KOG1258 mRNA processing protei 91.4 3.3 7.1E-05 32.8 9.2 95 74-173 298-393 (577)
375 cd02682 MIT_AAA_Arch MIT: doma 91.4 1.6 3.4E-05 24.6 6.3 28 74-101 7-34 (75)
376 KOG3807 Predicted membrane pro 91.2 4.8 0.0001 29.8 9.4 38 12-49 190-227 (556)
377 PHA02537 M terminase endonucle 90.8 4.2 9.1E-05 28.4 9.8 104 16-141 93-212 (230)
378 KOG0890 Protein kinase of the 90.7 9.4 0.0002 35.6 12.1 68 68-137 1665-1732(2382)
379 cd02678 MIT_VPS4 MIT: domain c 90.1 1.1 2.3E-05 25.2 4.4 34 3-36 3-36 (75)
380 cd02681 MIT_calpain7_1 MIT: do 89.5 1.3 2.8E-05 25.0 4.4 32 5-36 5-36 (76)
381 COG5107 RNA14 Pre-mRNA 3'-end 89.5 8.3 0.00018 29.9 10.8 148 6-156 302-481 (660)
382 PF07219 HemY_N: HemY protein 89.3 3.4 7.3E-05 25.0 6.6 37 2-38 55-91 (108)
383 cd02684 MIT_2 MIT: domain cont 89.1 1.4 3.1E-05 24.7 4.4 35 2-36 2-36 (75)
384 COG3014 Uncharacterized protei 89.0 7.7 0.00017 28.8 9.2 28 74-101 126-153 (449)
385 KOG3783 Uncharacterized conser 88.9 10 0.00022 30.0 10.0 65 75-139 451-523 (546)
386 PF12753 Nro1: Nuclear pore co 88.9 0.6 1.3E-05 34.9 3.4 56 123-180 334-396 (404)
387 cd02683 MIT_1 MIT: domain cont 88.9 1.4 3E-05 24.9 4.2 33 4-36 4-36 (77)
388 smart00745 MIT Microtubule Int 88.5 1.6 3.6E-05 24.4 4.5 34 3-36 5-38 (77)
389 cd02677 MIT_SNX15 MIT: domain 88.2 1.6 3.4E-05 24.6 4.2 34 3-36 3-36 (75)
390 cd02680 MIT_calpain7_2 MIT: do 88.1 1.5 3.2E-05 24.6 4.0 35 3-37 3-37 (75)
391 KOG3783 Uncharacterized conser 88.0 4.4 9.5E-05 31.8 7.5 62 109-175 451-520 (546)
392 cd02679 MIT_spastin MIT: domai 87.7 1.6 3.5E-05 24.8 4.0 33 4-36 6-38 (79)
393 KOG0292 Vesicle coat complex C 87.3 12 0.00026 31.6 9.8 126 3-145 988-1122(1202)
394 KOG0686 COP9 signalosome, subu 87.2 4.1 8.8E-05 30.9 6.7 100 73-172 150-255 (466)
395 PRK13184 pknD serine/threonine 87.1 2.9 6.3E-05 35.4 6.7 90 79-174 481-580 (932)
396 PF09205 DUF1955: Domain of un 87.0 5.9 0.00013 25.2 7.2 120 12-136 8-149 (161)
397 PF12854 PPR_1: PPR repeat 86.8 2 4.4E-05 19.7 4.0 23 109-131 9-31 (34)
398 cd02656 MIT MIT: domain contai 86.7 2.8 6E-05 23.4 4.7 34 3-36 3-36 (75)
399 PF04212 MIT: MIT (microtubule 85.6 3.2 6.9E-05 22.7 4.5 27 75-101 7-33 (69)
400 COG4941 Predicted RNA polymera 85.6 13 0.00028 27.7 8.4 75 74-148 330-406 (415)
401 KOG2422 Uncharacterized conser 85.5 17 0.00037 29.1 11.5 114 18-152 250-388 (665)
402 PF10952 DUF2753: Protein of u 85.5 6.8 0.00015 24.5 7.6 76 8-101 3-78 (140)
403 KOG2581 26S proteasome regulat 85.3 15 0.00032 28.2 11.2 103 72-177 168-278 (493)
404 cd02677 MIT_SNX15 MIT: domain 85.0 2 4.4E-05 24.1 3.5 15 121-135 20-34 (75)
405 PF01535 PPR: PPR repeat; Int 84.9 2.2 4.9E-05 18.5 3.1 24 77-100 4-27 (31)
406 PRK15490 Vi polysaccharide bio 84.9 6.2 0.00014 31.5 7.1 58 72-131 41-98 (578)
407 KOG0985 Vesicle coat protein c 84.6 26 0.00057 30.5 10.9 60 73-137 1104-1163(1666)
408 PF00244 14-3-3: 14-3-3 protei 84.3 12 0.00026 26.3 9.6 33 7-39 2-34 (236)
409 KOG1463 26S proteasome regulat 84.3 15 0.00032 27.4 10.4 108 6-139 209-319 (411)
410 PF09797 NatB_MDM20: N-acetylt 84.2 16 0.00034 27.5 9.2 48 86-133 196-243 (365)
411 KOG4014 Uncharacterized conser 84.1 11 0.00023 25.6 7.6 158 5-172 33-230 (248)
412 KOG3616 Selective LIM binding 84.1 13 0.00028 31.0 8.5 27 6-32 661-687 (1636)
413 KOG0546 HSP90 co-chaperone CPR 84.0 1.1 2.4E-05 33.0 2.7 52 72-123 308-359 (372)
414 PF02064 MAS20: MAS20 protein 83.6 2.8 6.1E-05 26.0 4.0 31 9-39 66-96 (121)
415 KOG2041 WD40 repeat protein [G 83.6 11 0.00024 31.0 8.0 26 7-32 797-822 (1189)
416 PF10952 DUF2753: Protein of u 83.4 8.7 0.00019 24.0 6.7 67 76-142 4-89 (140)
417 COG4259 Uncharacterized protei 83.3 4.1 8.9E-05 24.3 4.3 38 106-143 71-108 (121)
418 PF07219 HemY_N: HemY protein 83.1 8 0.00017 23.4 6.9 26 77-102 63-88 (108)
419 cd02681 MIT_calpain7_1 MIT: do 82.6 4.3 9.3E-05 22.9 4.1 29 74-102 7-35 (76)
420 PF09670 Cas_Cas02710: CRISPR- 82.4 19 0.00042 27.3 11.7 67 7-102 132-198 (379)
421 KOG3807 Predicted membrane pro 82.2 10 0.00022 28.3 6.8 89 77-172 188-301 (556)
422 COG4455 ImpE Protein of avirul 81.5 16 0.00034 25.6 8.2 62 13-107 8-69 (273)
423 smart00671 SEL1 Sel1-like repe 81.2 3.9 8.5E-05 18.5 3.6 29 7-35 2-34 (36)
424 KOG3616 Selective LIM binding 80.6 19 0.0004 30.1 8.3 136 12-172 712-850 (1636)
425 PF01239 PPTA: Protein prenylt 80.5 4 8.6E-05 18.2 4.2 26 127-152 3-28 (31)
426 PF15469 Sec5: Exocyst complex 80.3 15 0.00032 24.5 7.0 27 121-147 153-179 (182)
427 PF07163 Pex26: Pex26 protein; 80.1 20 0.00043 26.0 11.5 138 11-169 40-181 (309)
428 cd02683 MIT_1 MIT: domain cont 79.9 6.2 0.00013 22.3 4.2 25 76-100 9-33 (77)
429 PF02064 MAS20: MAS20 protein 79.4 8 0.00017 24.0 4.9 31 112-142 68-98 (121)
430 KOG1497 COP9 signalosome, subu 79.2 23 0.00051 26.2 12.4 103 6-134 103-211 (399)
431 KOG1464 COP9 signalosome, subu 79.1 12 0.00027 27.0 6.2 50 86-135 40-93 (440)
432 PF02184 HAT: HAT (Half-A-TPR) 78.3 5.3 0.00011 18.3 3.5 26 122-148 2-27 (32)
433 PF11846 DUF3366: Domain of un 77.9 13 0.00029 24.9 6.2 32 73-104 144-175 (193)
434 COG5091 SGT1 Suppressor of G2 77.5 14 0.0003 26.6 6.1 104 14-140 3-112 (368)
435 PF08238 Sel1: Sel1 repeat; I 77.4 5.9 0.00013 18.3 4.1 13 123-135 24-36 (39)
436 TIGR00756 PPR pentatricopeptid 77.2 5.2 0.00011 17.6 3.6 21 80-100 7-27 (35)
437 KOG1464 COP9 signalosome, subu 76.5 26 0.00057 25.4 7.8 67 74-140 192-264 (440)
438 PRK11619 lytic murein transgly 76.1 43 0.00092 27.6 10.0 126 9-135 244-374 (644)
439 KOG0128 RNA-binding protein SA 75.1 50 0.0011 27.9 10.3 100 73-173 113-217 (881)
440 KOG4563 Cell cycle-regulated h 74.5 15 0.00033 27.5 5.9 34 5-38 40-73 (400)
441 KOG1538 Uncharacterized conser 74.4 6.2 0.00013 32.1 4.1 50 81-133 781-830 (1081)
442 smart00101 14_3_3 14-3-3 homol 73.5 30 0.00064 24.6 11.7 30 8-37 3-33 (244)
443 cd02679 MIT_spastin MIT: domai 73.5 11 0.00023 21.5 4.0 16 88-103 4-19 (79)
444 PF08311 Mad3_BUB1_I: Mad3/BUB 72.8 20 0.00044 22.4 10.0 55 74-134 70-126 (126)
445 KOG2561 Adaptor protein NUB1, 72.5 44 0.00094 26.1 8.6 27 109-135 269-295 (568)
446 COG1747 Uncharacterized N-term 72.0 49 0.0011 26.5 11.6 59 74-134 100-158 (711)
447 PRK15490 Vi polysaccharide bio 71.5 32 0.00069 27.8 7.4 69 83-153 18-86 (578)
448 KOG4563 Cell cycle-regulated h 71.5 14 0.00031 27.7 5.1 59 74-132 42-108 (400)
449 COG5107 RNA14 Pre-mRNA 3'-end 71.5 14 0.00031 28.8 5.3 98 58-160 31-128 (660)
450 smart00745 MIT Microtubule Int 71.3 14 0.00031 20.5 4.3 21 80-100 15-35 (77)
451 KOG2997 F-box protein FBX9 [Ge 71.1 8.5 0.00018 28.3 3.9 42 3-44 16-57 (366)
452 PF10938 YfdX: YfdX protein; 69.8 28 0.00061 22.7 9.2 123 7-135 3-145 (155)
453 KOG1538 Uncharacterized conser 69.4 64 0.0014 26.7 10.4 21 11-31 637-657 (1081)
454 PF13812 PPR_3: Pentatricopept 68.7 9.3 0.0002 16.8 4.1 25 111-135 5-29 (34)
455 PF13041 PPR_2: PPR repeat fam 68.4 13 0.00029 18.4 6.5 28 109-136 5-32 (50)
456 PRK11619 lytic murein transgly 68.4 67 0.0014 26.5 12.2 95 74-174 280-374 (644)
457 TIGR00985 3a0801s04tom mitocho 68.0 12 0.00025 24.2 3.7 32 9-40 93-125 (148)
458 KOG4014 Uncharacterized conser 67.5 36 0.00079 23.2 9.6 74 74-151 69-154 (248)
459 COG1747 Uncharacterized N-term 67.0 65 0.0014 25.8 10.7 65 81-145 213-297 (711)
460 PF10366 Vps39_1: Vacuolar sor 66.8 17 0.00038 22.0 4.2 27 109-135 41-67 (108)
461 PF12753 Nro1: Nuclear pore co 66.5 15 0.00032 27.9 4.5 33 89-123 334-366 (404)
462 TIGR02710 CRISPR-associated pr 65.8 58 0.0013 24.9 12.7 28 11-38 135-162 (380)
463 PF08969 USP8_dimer: USP8 dime 65.6 22 0.00048 21.7 4.6 33 4-36 36-68 (115)
464 KOG0276 Vesicle coat complex C 65.5 39 0.00085 27.5 6.7 61 74-134 667-748 (794)
465 PF12583 TPPII_N: Tripeptidyl 65.2 32 0.0007 21.8 6.0 41 77-117 80-120 (139)
466 PF08311 Mad3_BUB1_I: Mad3/BUB 64.6 18 0.00038 22.6 4.1 29 72-100 98-126 (126)
467 PF13934 ELYS: Nuclear pore co 64.3 30 0.00065 24.1 5.5 54 75-132 80-133 (226)
468 PF13226 DUF4034: Domain of un 64.3 53 0.0011 23.9 10.3 30 124-153 116-145 (277)
469 PF09670 Cas_Cas02710: CRISPR- 64.0 63 0.0014 24.6 10.6 63 74-136 132-198 (379)
470 KOG0128 RNA-binding protein SA 63.3 59 0.0013 27.5 7.5 87 85-173 91-177 (881)
471 KOG0687 26S proteasome regulat 62.4 64 0.0014 24.2 11.1 106 4-136 102-210 (393)
472 KOG2034 Vacuolar sorting prote 62.1 13 0.00028 31.2 3.8 50 81-134 366-416 (911)
473 PF04190 DUF410: Protein of un 61.8 56 0.0012 23.4 13.2 130 6-136 10-170 (260)
474 TIGR02996 rpt_mate_G_obs repea 61.2 19 0.00041 17.7 3.6 32 95-126 4-35 (42)
475 KOG4056 Translocase of outer m 61.1 20 0.00044 22.8 3.7 32 9-40 84-115 (143)
476 PHA02537 M terminase endonucle 60.8 56 0.0012 23.0 6.7 38 69-106 165-211 (230)
477 PF12583 TPPII_N: Tripeptidyl 59.9 42 0.00091 21.3 5.9 44 109-152 78-121 (139)
478 COG2015 Alkyl sulfatase and re 59.8 46 0.001 26.3 6.1 48 110-157 455-502 (655)
479 COG5600 Transcription-associat 59.6 47 0.001 25.2 5.9 62 78-139 182-252 (413)
480 PF15297 CKAP2_C: Cytoskeleton 58.7 76 0.0017 23.9 7.7 34 72-105 139-172 (353)
481 KOG4151 Myosin assembly protei 58.1 11 0.00025 31.0 2.9 93 75-172 55-153 (748)
482 PF03745 DUF309: Domain of unk 57.8 28 0.00061 18.6 6.9 59 10-95 3-61 (62)
483 cd00215 PTS_IIA_lac PTS_IIA, P 57.3 33 0.00071 20.4 4.1 31 5-35 14-44 (97)
484 PF04010 DUF357: Protein of un 57.1 27 0.00059 19.6 3.5 29 3-31 32-60 (75)
485 TIGR00985 3a0801s04tom mitocho 56.7 40 0.00087 21.8 4.6 32 111-142 94-126 (148)
486 PF09797 NatB_MDM20: N-acetylt 56.1 20 0.00043 27.0 3.8 48 120-172 196-243 (365)
487 PF04090 RNA_pol_I_TF: RNA pol 55.8 64 0.0014 22.1 12.6 39 4-42 39-77 (199)
488 PF12739 TRAPPC-Trs85: ER-Golg 55.7 94 0.002 24.0 11.6 31 8-38 210-240 (414)
489 PF02255 PTS_IIA: PTS system, 55.5 39 0.00085 20.0 4.2 31 5-35 13-43 (96)
490 TIGR00823 EIIA-LAC phosphotran 55.4 37 0.00079 20.3 4.1 31 5-35 16-46 (99)
491 KOG4279 Serine/threonine prote 55.0 42 0.00092 28.2 5.4 179 5-183 200-403 (1226)
492 KOG1497 COP9 signalosome, subu 54.8 88 0.0019 23.4 14.0 95 72-168 102-206 (399)
493 COG5536 BET4 Protein prenyltra 54.5 39 0.00086 24.6 4.7 86 60-149 99-192 (328)
494 PF05053 Menin: Menin; InterP 54.4 1.2E+02 0.0025 24.7 11.5 46 105-150 316-367 (618)
495 TIGR03362 VI_chp_7 type VI sec 54.2 86 0.0019 23.1 9.1 48 85-133 111-158 (301)
496 PRK09591 celC cellobiose phosp 53.6 41 0.00088 20.3 4.1 31 5-35 19-49 (104)
497 KOG4056 Translocase of outer m 53.3 54 0.0012 20.9 4.7 32 112-143 86-117 (143)
498 PF00244 14-3-3: 14-3-3 protei 50.8 86 0.0019 22.1 7.0 65 75-139 3-69 (236)
499 KOG2114 Vacuolar assembly/sort 50.6 1.6E+02 0.0035 25.2 9.7 31 5-35 367-397 (933)
500 PF04190 DUF410: Protein of un 50.1 93 0.002 22.3 7.6 92 74-170 11-114 (260)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.3e-22 Score=150.54 Aligned_cols=165 Identities=18% Similarity=0.267 Sum_probs=143.3
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHH----HhhCCCcchhHHHHHHHHHH
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEK----KEVAPAPEMAELRSICHSNR 79 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 79 (186)
-.+++.++|+.+-..|+..+|..+|.+++.+.|.++++..++|.++ ..+..+.+. +++...|. .+.+..++
T Consensus 319 F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~----~aaa~nNL 394 (966)
T KOG4626|consen 319 FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE----FAAAHNNL 394 (966)
T ss_pred chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh----hhhhhhhH
Confidence 3578889999999999999999999999999999999999999887 445554444 44555554 44889999
Q ss_pred HHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhh
Q 044796 80 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSIL 159 (186)
Q Consensus 80 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 159 (186)
|.+|.++|++++|+.+|++++.+.|+..+++.++|.+|..+|+.+.|+.+|.+|+.++|...+++.+|+.++.. .
T Consensus 395 a~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kD-----s 469 (966)
T KOG4626|consen 395 ASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKD-----S 469 (966)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhc-----c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ccccccchhhhhcccCCCC
Q 044796 160 GRFGMSTDNFKAVKDPNTG 178 (186)
Q Consensus 160 ~~~~~A~~~~~~~~~~~~~ 178 (186)
|...+||..|+.++..+|+
T Consensus 470 Gni~~AI~sY~~aLklkPD 488 (966)
T KOG4626|consen 470 GNIPEAIQSYRTALKLKPD 488 (966)
T ss_pred CCcHHHHHHHHHHHccCCC
Confidence 9999999999999644443
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.7e-22 Score=149.85 Aligned_cols=163 Identities=19% Similarity=0.122 Sum_probs=133.8
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhh-hcCchh----HHHhhCCCcchhHHHHHHHHHH
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAK-EGQSAS----EKKEVAPAPEMAELRSICHSNR 79 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 79 (186)
-++++.++|+++-..+.|+.|+.+|.+|+.+.|.+..++-+++.++. ++..+. +.+++...|... .+++++
T Consensus 251 f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~----~Ay~Nl 326 (966)
T KOG4626|consen 251 FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFP----DAYNNL 326 (966)
T ss_pred chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCch----HHHhHH
Confidence 35778888888888888888888888888888888888888888874 444433 445555555444 888889
Q ss_pred HHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhh
Q 044796 80 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSIL 159 (186)
Q Consensus 80 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~ 159 (186)
|.++...|+..+|+.+|++++.+.|+++++.+++|.++..+|.+++|...|+++++..|+...++.+|+.++.. +
T Consensus 327 anALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq-----q 401 (966)
T KOG4626|consen 327 ANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ-----Q 401 (966)
T ss_pred HHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh-----c
Confidence 98888889999999999999999898888888888888888888888888888888888888888888888888 8
Q ss_pred ccccccchhhhhcccCC
Q 044796 160 GRFGMSTDNFKAVKDPN 176 (186)
Q Consensus 160 ~~~~~A~~~~~~~~~~~ 176 (186)
|++++|+.+|+.+++..
T Consensus 402 gnl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALRIK 418 (966)
T ss_pred ccHHHHHHHHHHHHhcC
Confidence 88888888888885443
No 3
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=5.2e-21 Score=123.95 Aligned_cols=156 Identities=56% Similarity=0.852 Sum_probs=142.0
Q ss_pred hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHH
Q 044796 2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGI 81 (186)
Q Consensus 2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 81 (186)
.+..++.+..-|+.++..|+|.+|...|..||.+.|. .+. ..++-+|.++|.
T Consensus 91 ~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~--------------------------~~~--e~rsIly~Nraa 142 (271)
T KOG4234|consen 91 AIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPS--------------------------TST--EERSILYSNRAA 142 (271)
T ss_pred HHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcc--------------------------ccH--HHHHHHHhhhHH
Confidence 3567889999999999999999999999999999998 333 335688999999
Q ss_pred HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH------------
Q 044796 82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR------------ 149 (186)
Q Consensus 82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~------------ 149 (186)
+.++++.++.|+..+.++++++|.+..++.++|.+|.++..|++|+..|.+.++.+|...++.....+
T Consensus 143 a~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkm 222 (271)
T KOG4234|consen 143 ALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKM 222 (271)
T ss_pred HHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998777665544
Q ss_pred ------HHHHHHHHhhccccccchhhhhcccCCCCccccccc
Q 044796 150 ------KLKEMGNSILGRFGMSTDNFKAVKDPNTGAYSISFQ 185 (186)
Q Consensus 150 ------~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 185 (186)
-|..+|+.+++.|..+...|+...+|+.++|+++|+
T Consensus 223 Kee~m~kLKdlGN~iL~pFGlStdnFqmvqd~nTGsySi~fk 264 (271)
T KOG4234|consen 223 KEEMMEKLKDLGNFILSPFGLSTDNFQMVQDPNTGSYSINFK 264 (271)
T ss_pred HHHHHHHHHHhhhhhcccccccccceeeeeCCCCCceeEEec
Confidence 567788889999999999999999999999999986
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.5e-21 Score=152.02 Aligned_cols=166 Identities=16% Similarity=0.191 Sum_probs=147.2
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
.+..+..+|.+++..|++++|+..|++++.++|.+...+..+|.+. ..++.+.+...+.......|.++.+++.+|.++
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~ 409 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH 409 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999877 445555555444333333344569999999999
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG 163 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (186)
...|++++|+.+|++++.++|++..++..+|.++..+|++++|+..|++++...|+++.++..+|.++.. .|+++
T Consensus 410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-----~g~~~ 484 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLD-----QNKFD 484 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-----ccCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ccchhhhhcccC
Q 044796 164 MSTDNFKAVKDP 175 (186)
Q Consensus 164 ~A~~~~~~~~~~ 175 (186)
+|++.|++++..
T Consensus 485 ~A~~~~~~Al~l 496 (615)
T TIGR00990 485 EAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHHHhc
Confidence 999999998643
No 5
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=2.6e-22 Score=149.16 Aligned_cols=164 Identities=19% Similarity=0.176 Sum_probs=142.5
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhh-cCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKE-GQSASEKKEVAPAPEMAELRSICHSNRGIC 82 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 82 (186)
..++.|..+|+|+..+++.+.|+++|++|+.++|...-++..+|..... ...+.+...+.......+.+..+|+.+|.+
T Consensus 419 ~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~v 498 (638)
T KOG1126|consen 419 NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTV 498 (638)
T ss_pred CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhh
Confidence 4678999999999999999999999999999999999999999988733 334444444444444444455999999999
Q ss_pred HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccc
Q 044796 83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRF 162 (186)
Q Consensus 83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 162 (186)
|.++++++.|.-+|++|++++|.+......+|.++.++|+.++|+..|++|+.++|.++-..+..+.++.. ++++
T Consensus 499 y~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~-----~~~~ 573 (638)
T KOG1126|consen 499 YLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS-----LGRY 573 (638)
T ss_pred eeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh-----hcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888 7777
Q ss_pred cccchhhhhc
Q 044796 163 GMSTDNFKAV 172 (186)
Q Consensus 163 ~~A~~~~~~~ 172 (186)
++|...++..
T Consensus 574 ~eal~~LEeL 583 (638)
T KOG1126|consen 574 VEALQELEEL 583 (638)
T ss_pred HHHHHHHHHH
Confidence 7777777655
No 6
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=4.4e-21 Score=131.30 Aligned_cols=119 Identities=34% Similarity=0.525 Sum_probs=112.6
Q ss_pred hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHH
Q 044796 2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGI 81 (186)
Q Consensus 2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 81 (186)
....|+.++..|+.+.+.++|++|+..|.+||.++|. ++..|+++|.
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~---------------------------------nAVyycNRAA 123 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPT---------------------------------NAVYYCNRAA 123 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC---------------------------------cchHHHHHHH
Confidence 3567899999999999999999999999999999999 3389999999
Q ss_pred HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
+|.++|.++.|++.++.++.+||.+..+|.++|.++..+|++++|++.|+++|+++|++...+.+|..+-..
T Consensus 124 Ay~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~ 195 (304)
T KOG0553|consen 124 AYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQK 195 (304)
T ss_pred HHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999866655
No 7
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.85 E-value=1.7e-19 Score=115.41 Aligned_cols=116 Identities=10% Similarity=0.110 Sum_probs=106.9
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK 85 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (186)
+..+..+|..+...|++++|+.+|++++..+|. ++.++..+|.++..
T Consensus 24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---------------------------------~~~a~~~lg~~~~~ 70 (144)
T PRK15359 24 PETVYASGYASWQEGDYSRAVIDFSWLVMAQPW---------------------------------SWRAHIALAGTWMM 70 (144)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------------------------cHHHHHHHHHHHHH
Confidence 445777899999999999999999999999999 34889999999999
Q ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 044796 86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEM 154 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 154 (186)
.|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..|.+++.+.|+++..+..++.+...+
T Consensus 71 ~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 71 LKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998877663
No 8
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.83 E-value=1.1e-19 Score=120.15 Aligned_cols=161 Identities=21% Similarity=0.172 Sum_probs=139.5
Q ss_pred hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCc----hhHHHhhCCCcchhHHHHHHHH
Q 044796 3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQS----ASEKKEVAPAPEMAELRSICHS 77 (186)
Q Consensus 3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 77 (186)
-+.+.+..++|..|+..|++..|..-++++|+.+|++..+|..++.++ ..+.. +.+.+++...|.+. ++++
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G----dVLN 107 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG----DVLN 107 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc----chhh
Confidence 356788999999999999999999999999999999999999999988 44444 44445566666555 9999
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 044796 78 NRGICFLKLGKFEESIKECTKALEL--NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG 155 (186)
Q Consensus 78 ~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 155 (186)
+.|..+..+|++++|...|++|+.. .|..+..+-++|.|..+.|+++.|..+|+++++++|+.+.+...++..+..
T Consensus 108 NYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~-- 185 (250)
T COG3063 108 NYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK-- 185 (250)
T ss_pred hhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh--
Confidence 9999999999999999999999973 334577899999999999999999999999999999999999999988888
Q ss_pred HHhhccccccchhhhhc
Q 044796 156 NSILGRFGMSTDNFKAV 172 (186)
Q Consensus 156 ~~~~~~~~~A~~~~~~~ 172 (186)
.|++..|.-.+++.
T Consensus 186 ---~~~y~~Ar~~~~~~ 199 (250)
T COG3063 186 ---AGDYAPARLYLERY 199 (250)
T ss_pred ---cccchHHHHHHHHH
Confidence 88888887777654
No 9
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.1e-19 Score=130.66 Aligned_cols=163 Identities=17% Similarity=0.150 Sum_probs=142.4
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
++.+.-+|+-|.-.++.++|+.+|++|++++|....+|..+|..+ .......+....+......|.+..+|+.+|++|.
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYE 409 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHH
Confidence 455566788888899999999999999999999999999999998 4455544444444444444444599999999999
Q ss_pred hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccc
Q 044796 85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGM 164 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (186)
.++-..=|+-+|++|++..|+++..|..+|.||.++++.++|+.+|.+++.....+..++..+|+.+.. +++.++
T Consensus 410 im~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~-----l~d~~e 484 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE-----LKDLNE 484 (559)
T ss_pred HhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH-----HHhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 888889
Q ss_pred cchhhhhcc
Q 044796 165 STDNFKAVK 173 (186)
Q Consensus 165 A~~~~~~~~ 173 (186)
|..+|++.+
T Consensus 485 Aa~~yek~v 493 (559)
T KOG1155|consen 485 AAQYYEKYV 493 (559)
T ss_pred HHHHHHHHH
Confidence 999888764
No 10
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.82 E-value=4.6e-19 Score=142.31 Aligned_cols=171 Identities=12% Similarity=0.011 Sum_probs=142.1
Q ss_pred HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796 8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL 86 (186)
Q Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 86 (186)
.++..|..+...|++++|+.+|+++++.+|++......++... ..++.+.+...+.......|. +..+..+|.++.+.
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~l 622 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQR 622 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHC
Confidence 4667788889999999999999999999988876665544332 335555555444333333332 58899999999999
Q ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccc
Q 044796 87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMST 166 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~ 166 (186)
|++++|+..+++++..+|+++.++..+|.++...|++++|+..|+++++++|+++.++.++|.++.. .|++++|+
T Consensus 623 G~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~-----lGd~~eA~ 697 (987)
T PRK09782 623 HNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR-----LDDMAATQ 697 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----CCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 99999999
Q ss_pred hhhhhcccCCCCcccccc
Q 044796 167 DNFKAVKDPNTGAYSISF 184 (186)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~ 184 (186)
..|++++...|+...+.+
T Consensus 698 ~~l~~Al~l~P~~a~i~~ 715 (987)
T PRK09782 698 HYARLVIDDIDNQALITP 715 (987)
T ss_pred HHHHHHHhcCCCCchhhh
Confidence 999999766666655543
No 11
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.8e-19 Score=130.49 Aligned_cols=169 Identities=18% Similarity=0.198 Sum_probs=150.4
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
.++++...|.-++-.|++-.|..-|+++|+++|.+...+..++..+ ...+.....+.+.......|.+++.|+.+|++.
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~ 404 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR 404 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence 4788999999999999999999999999999999999888888877 445555555554444444444559999999999
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG 163 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (186)
+-++++++|+..|++++.++|.+..++..++.+.++++.++++...|+.+++..|+.++++...+.++.. +++|+
T Consensus 405 flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD-----qqqFd 479 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD-----QQQFD 479 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh-----HHhHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred ccchhhhhcccCCCC
Q 044796 164 MSTDNFKAVKDPNTG 178 (186)
Q Consensus 164 ~A~~~~~~~~~~~~~ 178 (186)
.|++.|..++...+.
T Consensus 480 ~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 480 KAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHhhccc
Confidence 999999999755443
No 12
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.81 E-value=3.2e-19 Score=114.16 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=92.2
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 044796 76 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG 155 (186)
Q Consensus 76 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 155 (186)
+..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|+..|++++.++|+++.++.++|.++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-- 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-- 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH--
Confidence 556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccchhhhhcccCCCC
Q 044796 156 NSILGRFGMSTDNFKAVKDPNTG 178 (186)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~~~~~~ 178 (186)
.|++++|+..|.+++...|+
T Consensus 105 ---~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 105 ---MGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred ---cCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999644443
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=1.3e-18 Score=135.74 Aligned_cols=170 Identities=14% Similarity=0.084 Sum_probs=137.7
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
.+..++.+|.++...|++++|+.+|+++++.+|+++.++..+|.+. ..++.+.+...+.......|.....+..+|.++
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999999999887 556666665554444444444558899999999
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH--hhcc
Q 044796 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS--ILGR 161 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~--~~~~ 161 (186)
..+|++++|+..+++++..+|+++.++..+|.++..+|++++|+..|++++.++|.+...+..+...+...+.. ..++
T Consensus 444 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999998655444332221111111 2578
Q ss_pred ccccchhhhhccc
Q 044796 162 FGMSTDNFKAVKD 174 (186)
Q Consensus 162 ~~~A~~~~~~~~~ 174 (186)
+++|+..+++++.
T Consensus 524 ~~eA~~~~~kAl~ 536 (615)
T TIGR00990 524 FIEAENLCEKALI 536 (615)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887753
No 14
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.80 E-value=2.9e-18 Score=117.86 Aligned_cols=166 Identities=16% Similarity=0.144 Sum_probs=139.3
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGIC 82 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 82 (186)
..+..+..+|..++..|++++|+..++++++.+|.+..++..++... ..++.+.+...+.......+.....+..+|.+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 108 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTF 108 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 35788999999999999999999999999999999999999888876 44555554443332222223344788999999
Q ss_pred HhhhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 044796 83 FLKLGKFEESIKECTKALELN--PTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILG 160 (186)
Q Consensus 83 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 160 (186)
+...|++++|+..+++++... |.....+..+|.++...|++++|...+.+++..+|.++.++..++.++.. .|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-----~~ 183 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL-----RG 183 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH-----cC
Confidence 999999999999999999853 45677889999999999999999999999999999999999999988888 89
Q ss_pred cccccchhhhhccc
Q 044796 161 RFGMSTDNFKAVKD 174 (186)
Q Consensus 161 ~~~~A~~~~~~~~~ 174 (186)
++++|...+++++.
T Consensus 184 ~~~~A~~~~~~~~~ 197 (234)
T TIGR02521 184 QYKDARAYLERYQQ 197 (234)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999988754
No 15
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=4.9e-19 Score=130.25 Aligned_cols=167 Identities=16% Similarity=0.153 Sum_probs=140.4
Q ss_pred hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCc-------------------------
Q 044796 2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQS------------------------- 55 (186)
Q Consensus 2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~------------------------- 55 (186)
..+++++|..+|.+....++-..|+..++++++++|++.+++-.++..+ .++-.
T Consensus 315 dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~ 394 (579)
T KOG1125|consen 315 DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGE 394 (579)
T ss_pred ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCc
Confidence 3478899999999999999999999999999999999999988887443 11110
Q ss_pred --------------------hhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHH
Q 044796 56 --------------------ASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAE 115 (186)
Q Consensus 56 --------------------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 115 (186)
+....+....+. ..++++...+|.+|...|+|++|+.+|+.||..+|++...|.++|-
T Consensus 395 ~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~--~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 395 NEDFENTKSFLDSSHLAHIQELFLEAARQLPT--KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGA 472 (579)
T ss_pred cccccCCcCCCCHHHHHHHHHHHHHHHHhCCC--CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhH
Confidence 001111111111 1456889999999999999999999999999999999999999999
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccC
Q 044796 116 AHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDP 175 (186)
Q Consensus 116 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 175 (186)
++..-.+.++|+..|++|+++.|....+++++|.++.. +|.|++|.++|-.+++.
T Consensus 473 tLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN-----lG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN-----LGAYKEAVKHLLEALSM 527 (579)
T ss_pred HhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh-----hhhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999988888 99999999999887643
No 16
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.79 E-value=1.3e-18 Score=129.76 Aligned_cols=166 Identities=19% Similarity=0.199 Sum_probs=146.1
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
+.++-.+|..+....+++.|..+|+.||..+|++-.+|+++|.++ +.++.+.++.-+.......|.+..+.+.+|..+.
T Consensus 455 aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~ 534 (638)
T KOG1126|consen 455 AYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQH 534 (638)
T ss_pred chhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHH
Confidence 456777888999999999999999999999999999999999987 6666665554443333333344499999999999
Q ss_pred hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccc
Q 044796 85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGM 164 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (186)
++|+.++|+..+++|+.++|.++-..+.+|.+++.++++++|+..+++.-++-|+...++..+|+++.. .|..+.
T Consensus 535 ~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~-----~~~~~~ 609 (638)
T KOG1126|consen 535 QLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKR-----LGNTDL 609 (638)
T ss_pred HhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHH-----HccchH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 899999
Q ss_pred cchhhhhcccCC
Q 044796 165 STDNFKAVKDPN 176 (186)
Q Consensus 165 A~~~~~~~~~~~ 176 (186)
|+..|--+.+.+
T Consensus 610 Al~~f~~A~~ld 621 (638)
T KOG1126|consen 610 ALLHFSWALDLD 621 (638)
T ss_pred HHHhhHHHhcCC
Confidence 999998775433
No 17
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.79 E-value=1e-17 Score=119.58 Aligned_cols=131 Identities=20% Similarity=0.149 Sum_probs=111.7
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
..+..++.+|..+...|++++|+..|+++++++|+ .+.+|..+|.++
T Consensus 62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---------------------------------~~~a~~~lg~~~ 108 (296)
T PRK11189 62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPD---------------------------------MADAYNYLGIYL 108 (296)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---------------------------------CHHHHHHHHHHH
Confidence 34678999999999999999999999999999999 338899999999
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG 163 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (186)
...|++++|+..|+++++++|++..++.++|.++...|++++|+..|+++++++|+++.....+. .... .++++
T Consensus 109 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~-l~~~-----~~~~~ 182 (296)
T PRK11189 109 TQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLY-LAES-----KLDPK 182 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHc-----cCCHH
Confidence 99999999999999999999999999999999999999999999999999999999874222111 1122 56788
Q ss_pred ccchhhhhcc
Q 044796 164 MSTDNFKAVK 173 (186)
Q Consensus 164 ~A~~~~~~~~ 173 (186)
+|+..|.+..
T Consensus 183 ~A~~~l~~~~ 192 (296)
T PRK11189 183 QAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHH
Confidence 8888886553
No 18
>PRK12370 invasion protein regulator; Provisional
Probab=99.78 E-value=5.6e-18 Score=130.38 Aligned_cols=164 Identities=12% Similarity=0.022 Sum_probs=136.2
Q ss_pred HHHHHHHhHhHHHH---------cccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHH
Q 044796 5 EANEAKLEGNKLFA---------EGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSI 74 (186)
Q Consensus 5 ~a~~~~~~g~~~~~---------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 74 (186)
.+..+..+|.++.. .+++++|+..++++++++|+++.++..+|.+. ..++.+.+...+.......|.++.
T Consensus 294 ~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~ 373 (553)
T PRK12370 294 SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISAD 373 (553)
T ss_pred cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Confidence 34566777776653 34589999999999999999999999998876 555555555554444444444558
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Q 044796 75 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD-PSNNQAKRTILRKLKE 153 (186)
Q Consensus 75 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 153 (186)
+++.+|.++...|++++|+..++++++++|.++.+++.++.+++..|++++|+..+++++... |+++.++..++.++..
T Consensus 374 a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~ 453 (553)
T PRK12370 374 IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSL 453 (553)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998887777888888999999999999999875 7889899999988888
Q ss_pred HHHHhhccccccchhhhhcc
Q 044796 154 MGNSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 154 ~~~~~~~~~~~A~~~~~~~~ 173 (186)
.|++++|+..+.+..
T Consensus 454 -----~G~~~eA~~~~~~~~ 468 (553)
T PRK12370 454 -----KGKHELARKLTKEIS 468 (553)
T ss_pred -----CCCHHHHHHHHHHhh
Confidence 999999999998764
No 19
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.77 E-value=1.2e-17 Score=112.20 Aligned_cols=99 Identities=13% Similarity=0.102 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHH-HHhcC--HHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAH-EKLEH--FEEAIADMKKILEFDPSNNQAKRTIL 148 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~-~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~ 148 (186)
++..|..+|.++...|++++|+..|++++.++|+++.++..+|.++ ...|+ +++|...++++++.+|+++.++..+|
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA 151 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA 151 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 4489999999999999999999999999999999999999999985 67787 59999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccchhhhhcccC
Q 044796 149 RKLKEMGNSILGRFGMSTDNFKAVKDP 175 (186)
Q Consensus 149 ~~~~~~~~~~~~~~~~A~~~~~~~~~~ 175 (186)
..+.. .|++++|+.+|+++++.
T Consensus 152 ~~~~~-----~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 152 SDAFM-----QADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHH-----cCCHHHHHHHHHHHHhh
Confidence 88888 99999999999998633
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=1.3e-17 Score=130.37 Aligned_cols=163 Identities=16% Similarity=0.134 Sum_probs=128.8
Q ss_pred HhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchh----HHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796 11 LEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSAS----EKKEVAPAPEMAELRSICHSNRGICFLK 85 (186)
Q Consensus 11 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (186)
..|..+...|++++|+..|++++..+|+++.++..+|..+ ..+...+ +...+.......|..+.++..+|.++..
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR 296 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 4467778889999999999999999999998888888776 3333332 2333222222233345888999999999
Q ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccccc
Q 044796 86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMS 165 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A 165 (186)
.|++++|+..+++++..+|+++.++..+|.++...|++++|+..|++++..+|++...+..++.++.. .|++++|
T Consensus 297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~-----~G~~deA 371 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQ-----AGKTSEA 371 (656)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-----CCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999888777777777777 8889999
Q ss_pred chhhhhcccCCCC
Q 044796 166 TDNFKAVKDPNTG 178 (186)
Q Consensus 166 ~~~~~~~~~~~~~ 178 (186)
+..|++++...|.
T Consensus 372 ~~~l~~al~~~P~ 384 (656)
T PRK15174 372 ESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHhChh
Confidence 9999888544333
No 21
>PRK12370 invasion protein regulator; Provisional
Probab=99.76 E-value=2.6e-17 Score=126.67 Aligned_cols=157 Identities=13% Similarity=-0.004 Sum_probs=128.6
Q ss_pred HHHHhHhHHHH---cccHHHHHHHHHHHHhccCCChhhhhccchhhhh----------cCc----hhHHHhhCCCcchhH
Q 044796 8 EAKLEGNKLFA---EGKYEEALLQYEVALRVASVPERAESASAPEAKE----------GQS----ASEKKEVAPAPEMAE 70 (186)
Q Consensus 8 ~~~~~g~~~~~---~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----------~~~----~~~~~~~~~~~~~~~ 70 (186)
.++..|...+. .+.+++|+.+|+++++++|+++.++..++.++.. ++. ..+.+++...|.
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~--- 336 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN--- 336 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC---
Confidence 35556654443 3568899999999999999999998888764311 112 233344555554
Q ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796 71 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK 150 (186)
Q Consensus 71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 150 (186)
++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++++++++|.++.+...++.+
T Consensus 337 -~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~ 415 (553)
T PRK12370 337 -NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWI 415 (553)
T ss_pred -CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 4489999999999999999999999999999999999999999999999999999999999999999998877666655
Q ss_pred HHHHHHHhhccccccchhhhhcc
Q 044796 151 LKEMGNSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 151 ~~~~~~~~~~~~~~A~~~~~~~~ 173 (186)
+.. .|++++|+..+++++
T Consensus 416 ~~~-----~g~~eeA~~~~~~~l 433 (553)
T PRK12370 416 TYY-----HTGIDDAIRLGDELR 433 (553)
T ss_pred HHh-----ccCHHHHHHHHHHHH
Confidence 555 789999999998875
No 22
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.76 E-value=6.3e-17 Score=118.01 Aligned_cols=117 Identities=23% Similarity=0.394 Sum_probs=109.4
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL 86 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 86 (186)
..+...|..++..|+|++|+.+|.+++.++|+ ++.++..+|.++..+
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~---------------------------------~~~a~~~~a~~~~~~ 49 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPN---------------------------------NAELYADRAQANIKL 49 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------------------CHHHHHHHHHHHHHc
Confidence 45778899999999999999999999999999 337889999999999
Q ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 044796 87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN 156 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 156 (186)
|++++|+..+++++.++|+++.+++.+|.++..+|++++|+..|++++.++|+++.+...++.+...+..
T Consensus 50 g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 50 GNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999988777543
No 23
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.75 E-value=2.1e-16 Score=100.04 Aligned_cols=104 Identities=13% Similarity=0.052 Sum_probs=96.0
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
+.-+.++..|..++..|++++|...|+-+...+|. ++..|+++|.++
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~---------------------------------~~~y~~gLG~~~ 79 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW---------------------------------SFDYWFRLGECC 79 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---------------------------------cHHHHHHHHHHH
Confidence 34567889999999999999999999999999999 348999999999
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 044796 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN 140 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 140 (186)
..+|+|++|+..|.+++.++|++|.++.+.|.|+...|+.+.|...|+.++......
T Consensus 80 Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 80 QAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999999999987433
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.74 E-value=1.3e-16 Score=109.68 Aligned_cols=163 Identities=17% Similarity=0.163 Sum_probs=135.4
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcc--hhHHHHHHHHHHHH
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPE--MAELRSICHSNRGI 81 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~ 81 (186)
.+..+..+|..+...|++++|+..|+++++..|.+..++..++... ..++...+...+..... ..+.....+..+|.
T Consensus 64 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (234)
T TIGR02521 64 DYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGL 143 (234)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 3567888999999999999999999999999999999888888776 44555444443322111 11223467888999
Q ss_pred HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcc
Q 044796 82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGR 161 (186)
Q Consensus 82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 161 (186)
++...|++++|+..+++++..+|+++.++..+|.++...|++++|...+++++...|.++..+..++.++.. .|+
T Consensus 144 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 218 (234)
T TIGR02521 144 CALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARA-----LGD 218 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----Hhh
Confidence 999999999999999999999999999999999999999999999999999999999888888888877777 778
Q ss_pred ccccchhhhhc
Q 044796 162 FGMSTDNFKAV 172 (186)
Q Consensus 162 ~~~A~~~~~~~ 172 (186)
.+.|....+..
T Consensus 219 ~~~a~~~~~~~ 229 (234)
T TIGR02521 219 VAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHH
Confidence 88887776654
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.73 E-value=7.1e-17 Score=129.88 Aligned_cols=156 Identities=13% Similarity=0.064 Sum_probs=135.5
Q ss_pred hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHH
Q 044796 12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFE 90 (186)
Q Consensus 12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 90 (186)
++......|++++|+..|+++++.+|+ +.++..+|.+. ..+..+.+...+.......|.++.++.++|.++...|+++
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 344445569999999999999999997 88899888876 5566666666655555555556699999999999999999
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhh
Q 044796 91 ESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFK 170 (186)
Q Consensus 91 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~ 170 (186)
+|+..++++++.+|+++.+++++|.++..+|++++|+..|++++.++|++..+....+.+... ...++.|.+.++
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~-----~~~~~~a~~~~~ 735 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQ-----RFNFRRLHEEVG 735 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHH-----HHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988888 777888888887
Q ss_pred hcc
Q 044796 171 AVK 173 (186)
Q Consensus 171 ~~~ 173 (186)
+..
T Consensus 736 r~~ 738 (987)
T PRK09782 736 RRW 738 (987)
T ss_pred HHh
Confidence 774
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.73 E-value=7.7e-17 Score=126.13 Aligned_cols=95 Identities=19% Similarity=0.334 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhhhccHHH----HHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEE----SIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR 149 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 149 (186)
.++..+|.++...|++++ |+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..++.
T Consensus 247 ~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~ 326 (656)
T PRK15174 247 ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 445556666666666654 5666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhhccccccchhhhhcc
Q 044796 150 KLKEMGNSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 150 ~~~~~~~~~~~~~~~A~~~~~~~~ 173 (186)
++.. .|++++|+..|++++
T Consensus 327 ~l~~-----~G~~~eA~~~l~~al 345 (656)
T PRK15174 327 ALRQ-----VGQYTAASDEFVQLA 345 (656)
T ss_pred HHHH-----CCCHHHHHHHHHHHH
Confidence 6666 666777777776664
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=1e-16 Score=115.68 Aligned_cols=164 Identities=22% Similarity=0.181 Sum_probs=136.7
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhh-hcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAK-EGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
-..+|-.+|..+...++...|+..|++|++++|.+-.+|+++|..+. .+...-+...+.......|.++.+|..+|.||
T Consensus 363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY 442 (559)
T KOG1155|consen 363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECY 442 (559)
T ss_pred hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 35678889999999999999999999999999999999999998873 34443333333333333334459999999999
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-------cCCCChHHHHHHHHHHHHHHH
Q 044796 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE-------FDPSNNQAKRTILRKLKEMGN 156 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~ 156 (186)
.+.++.++|+.+|.+++.....+..++..+|.++..+++..+|..+|.+.++ .+|+...+...|+.-...
T Consensus 443 ~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k--- 519 (559)
T KOG1155|consen 443 EKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKK--- 519 (559)
T ss_pred HHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh---
Confidence 9999999999999999999998999999999999999999999999999998 567777778888887777
Q ss_pred Hhhccccccchhhhhcc
Q 044796 157 SILGRFGMSTDNFKAVK 173 (186)
Q Consensus 157 ~~~~~~~~A~~~~~~~~ 173 (186)
.+++++|..+...+.
T Consensus 520 --~~~~~~As~Ya~~~~ 534 (559)
T KOG1155|consen 520 --MKDFDEASYYATLVL 534 (559)
T ss_pred --hcchHHHHHHHHHHh
Confidence 788888777655543
No 28
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.73 E-value=8.1e-16 Score=97.67 Aligned_cols=111 Identities=20% Similarity=0.247 Sum_probs=94.1
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
.+...+.+|..++..|++++|+..+++++..+|. ++.++..+|.++.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~---------------------------------~~~~~~~la~~~~ 62 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY---------------------------------NSRYWLGLAACCQ 62 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC---------------------------------cHHHHHHHHHHHH
Confidence 4567788888888899999999999998888888 2378888899999
Q ss_pred hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796 85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL 148 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 148 (186)
.+|++++|+..+++++..+|+++..++.+|.++...|++++|+..|+++++++|++........
T Consensus 63 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 126 (135)
T TIGR02552 63 MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKE 126 (135)
T ss_pred HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998877554433
No 29
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.72 E-value=2.7e-16 Score=126.80 Aligned_cols=166 Identities=20% Similarity=0.208 Sum_probs=115.0
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcC-------------------------------
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQ------------------------------- 54 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~------------------------------- 54 (186)
..++..|..++..|++++|+..+++++..+|+++.+++.+|.+. ..++
T Consensus 23 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (899)
T TIGR02917 23 ESLIEAAKSYLQKNKYKAAIIQLKNALQKDPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLL 102 (899)
T ss_pred HHHHHHHHHHHHcCChHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555443 2222
Q ss_pred ---chhHHHhhCCCc-chhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 044796 55 ---SASEKKEVAPAP-EMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADM 130 (186)
Q Consensus 55 ---~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 130 (186)
.+.+...+.... ...+..+..+..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+
T Consensus 103 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 182 (899)
T TIGR02917 103 QGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALI 182 (899)
T ss_pred CCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHH
Confidence 222222222111 2334455778888888888899999999999999888888888888888888888888888888
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796 131 KKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT 177 (186)
Q Consensus 131 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 177 (186)
+++++.+|.+..++..++.++.. .|++++|+..|++++..+|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~A~~~~~~a~~~~p 224 (899)
T TIGR02917 183 DEVLTADPGNVDALLLKGDLLLS-----LGNIELALAAYRKAIALRP 224 (899)
T ss_pred HHHHHhCCCChHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhhCC
Confidence 88888888888888888887777 7888888888887754333
No 30
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=2e-16 Score=112.79 Aligned_cols=135 Identities=35% Similarity=0.588 Sum_probs=113.0
Q ss_pred hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHH
Q 044796 2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGI 81 (186)
Q Consensus 2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 81 (186)
+++.|......|+.+++.|+|..|...|++++..-+..... +.++..... ...-.++.+++.
T Consensus 204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~-----------~~ee~~~~~-------~~k~~~~lNlA~ 265 (397)
T KOG0543|consen 204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSF-----------DEEEQKKAE-------ALKLACHLNLAA 265 (397)
T ss_pred HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccC-----------CHHHHHHHH-------HHHHHHhhHHHH
Confidence 56788899999999999999999999999999865541110 001111111 112378899999
Q ss_pred HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 044796 82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEM 154 (186)
Q Consensus 82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 154 (186)
|+.++++|.+|+.+++++|+++|++..++++.|.++..+|+++.|...|+++++++|+|..+...+..+-...
T Consensus 266 c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 266 CYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998877663
No 31
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.72 E-value=1.8e-16 Score=123.37 Aligned_cols=133 Identities=14% Similarity=0.034 Sum_probs=120.7
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
.++.++.+|.+....|.+++|...++.++++.|++ ..+...++.++.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~---------------------------------~~a~~~~a~~L~ 131 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS---------------------------------SEAFILMLRGVK 131 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc---------------------------------HHHHHHHHHHHH
Confidence 47888999999999999999999999999999993 378888999999
Q ss_pred hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccc
Q 044796 85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGM 164 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (186)
+.+++++|+..+++++..+|+++.+++.+|.++..+|++++|...|++++..+|+++.++..+|.++.. .|+.++
T Consensus 132 ~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~-----~G~~~~ 206 (694)
T PRK15179 132 RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR-----RGALWR 206 (694)
T ss_pred HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-----cCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988 899999
Q ss_pred cchhhhhcccC
Q 044796 165 STDNFKAVKDP 175 (186)
Q Consensus 165 A~~~~~~~~~~ 175 (186)
|...|+++++.
T Consensus 207 A~~~~~~a~~~ 217 (694)
T PRK15179 207 ARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHh
Confidence 99999888643
No 32
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=5.1e-17 Score=119.77 Aligned_cols=170 Identities=13% Similarity=0.116 Sum_probs=139.6
Q ss_pred HHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhcc
Q 044796 10 KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGK 88 (186)
Q Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 88 (186)
+..|..+++.|+..+|+-+|+.++..+|++.++|..+|... ..+++..+..++.......|.+-.++..+|..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 56899999999999999999999999999999999999987 33444444444444444444445899999999988887
Q ss_pred HHHHHHHHHHHHhc-----------------------------------------Cc--ccHHHHHHHHHHHHHhcCHHH
Q 044796 89 FEESIKECTKALEL-----------------------------------------NP--TYMKALIRRAEAHEKLEHFEE 125 (186)
Q Consensus 89 ~~~A~~~~~~al~~-----------------------------------------~p--~~~~~~~~lg~~~~~~g~~~~ 125 (186)
-.+|+.++.+=+.. .| .++++...||.+|...|+|+.
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 77777777765443 33 367888999999999999999
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCCCcccccc
Q 044796 126 AIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTGAYSISF 184 (186)
Q Consensus 126 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 184 (186)
|+++|+.||..+|+|...|..||-.+.. -.+..+|+..|.+++...|+.....|
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN-----~~~s~EAIsAY~rALqLqP~yVR~Ry 502 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLAN-----GNRSEEAISAYNRALQLQPGYVRVRY 502 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcC-----CcccHHHHHHHHHHHhcCCCeeeeeh
Confidence 9999999999999999999999998888 88999999999999877666555444
No 33
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.72 E-value=2.1e-16 Score=109.51 Aligned_cols=164 Identities=18% Similarity=0.151 Sum_probs=131.2
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCCh---hhhhccchhh-hhcCchhHHHhh----CCCcchhHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPE---RAESASAPEA-KEGQSASEKKEV----APAPEMAELRSIC 75 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~~~~ 75 (186)
..++.++.+|..++..|++++|+..|++++..+|.++ .+++.+|.++ ..++.+.+...+ ...|... ....+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~-~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP-DADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC-chHHH
Confidence 3577899999999999999999999999999999876 4667777766 445555554443 3333222 12247
Q ss_pred HHHHHHHHhhh--------ccHHHHHHHHHHHHhcCcccHHHH-----------------HHHHHHHHHhcCHHHHHHHH
Q 044796 76 HSNRGICFLKL--------GKFEESIKECTKALELNPTYMKAL-----------------IRRAEAHEKLEHFEEAIADM 130 (186)
Q Consensus 76 ~~~~a~~~~~~--------~~~~~A~~~~~~al~~~p~~~~~~-----------------~~lg~~~~~~g~~~~A~~~~ 130 (186)
++.+|.++... |++++|+..+++++..+|++..++ ..+|.++...|++.+|+..+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 88889988876 889999999999999999876442 36788899999999999999
Q ss_pred HHHHhcCCCC---hHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796 131 KKILEFDPSN---NQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 131 ~~al~~~p~~---~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~ 173 (186)
++++...|++ +.++..++.++.. .|++++|+.+++...
T Consensus 190 ~~al~~~p~~~~~~~a~~~l~~~~~~-----lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 190 ETVVENYPDTPATEEALARLVEAYLK-----LGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHHHCCCCcchHHHHHHHHHHHHH-----cCCHHHHHHHHHHHH
Confidence 9999997765 5789999988888 999999999887763
No 34
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.71 E-value=2e-16 Score=127.51 Aligned_cols=166 Identities=17% Similarity=0.163 Sum_probs=124.7
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
.+..+..+|.++...|++++|+..|++++...|++ ..+..++... ..++...+...+.......|.+..++..+|.++
T Consensus 702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~ 780 (899)
T TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELY 780 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45667778888888888888888888888888877 4444455444 445555554443333333334457888888888
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG 163 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (186)
...|++++|+..|+++++.+|+++.++..+|.++...|+ .+|+..+++++.+.|+++..+..++.++.. .|+++
T Consensus 781 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~ 854 (899)
T TIGR02917 781 LAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE-----KGEAD 854 (899)
T ss_pred HHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-----cCCHH
Confidence 888888888888888888888888888888888888888 778888888888888888888888877777 78888
Q ss_pred ccchhhhhcccCCC
Q 044796 164 MSTDNFKAVKDPNT 177 (186)
Q Consensus 164 ~A~~~~~~~~~~~~ 177 (186)
+|+..|++++..++
T Consensus 855 ~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 855 RALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHHHHHHhhCC
Confidence 88888888764433
No 35
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.71 E-value=4.9e-16 Score=128.57 Aligned_cols=162 Identities=15% Similarity=0.114 Sum_probs=129.8
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchh---------HHHHHHH
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMA---------ELRSICH 76 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 76 (186)
+..+..+|.++...|++++|+.+|+++++.+|++..++..++.++.....+.+...+...+... ......+
T Consensus 385 ~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~ 464 (1157)
T PRK11447 385 SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRL 464 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHH
Confidence 4567778888888888888888888888888888887777776664444444444433222211 1113456
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 044796 77 SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN 156 (186)
Q Consensus 77 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 156 (186)
..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++.+|+++.+++.++..+..
T Consensus 465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~--- 541 (1157)
T PRK11447 465 AQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSG--- 541 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh---
Confidence 67899999999999999999999999999999999999999999999999999999999999999999998877777
Q ss_pred Hhhccccccchhhhhc
Q 044796 157 SILGRFGMSTDNFKAV 172 (186)
Q Consensus 157 ~~~~~~~~A~~~~~~~ 172 (186)
.++.++|+..++.+
T Consensus 542 --~~~~~~Al~~l~~l 555 (1157)
T PRK11447 542 --SDRDRAALAHLNTL 555 (1157)
T ss_pred --CCCHHHHHHHHHhC
Confidence 78888888887765
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.71 E-value=2.1e-16 Score=112.27 Aligned_cols=130 Identities=18% Similarity=0.165 Sum_probs=94.3
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK 85 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (186)
+..+...|.++.+.|++++|+.+|+++++.+|+ ++.+...++.++..
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~---------------------------------~~~~~~~l~~~li~ 192 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPD---------------------------------DPDARNALAWLLID 192 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT----------------------------------HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------------------------CHHHHHHHHHHHHH
Confidence 455666677777777777777777777777776 44778888999999
Q ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccccc
Q 044796 86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMS 165 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A 165 (186)
.|+++++...++......|+++..+..+|.++..+|++++|+.+|++++..+|+|+.+...++.++.. .|++++|
T Consensus 193 ~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~-----~g~~~~A 267 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQ-----AGRKDEA 267 (280)
T ss_dssp TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccc-----ccccccc
Confidence 99999999999998888899999999999999999999999999999999999999999999999999 9999999
Q ss_pred chhhhhcc
Q 044796 166 TDNFKAVK 173 (186)
Q Consensus 166 ~~~~~~~~ 173 (186)
...+.++.
T Consensus 268 ~~~~~~~~ 275 (280)
T PF13429_consen 268 LRLRRQAL 275 (280)
T ss_dssp --------
T ss_pred cccccccc
Confidence 99887764
No 37
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.70 E-value=4.4e-16 Score=128.81 Aligned_cols=164 Identities=10% Similarity=0.029 Sum_probs=123.1
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhh-hcCchhHHHhhCCCcc-----------------
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAK-EGQSASEKKEVAPAPE----------------- 67 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------------- 67 (186)
+..++.+|.++...|++++|+..|+++++.+|.++.+++.++.... .++...+...+...+.
T Consensus 495 ~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~ 574 (1157)
T PRK11447 495 VWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSD 574 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhh
Confidence 3455666777777777777777777777777776666655543321 1111111111111100
Q ss_pred -----------------------hhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHH
Q 044796 68 -----------------------MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124 (186)
Q Consensus 68 -----------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 124 (186)
..|.++..+..+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|+++
T Consensus 575 ~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 575 QVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 012234677889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhccc
Q 044796 125 EAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKD 174 (186)
Q Consensus 125 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~ 174 (186)
+|+..+++++...|+++.++..++.++.. .|++++|+..|++++.
T Consensus 655 eA~~~l~~ll~~~p~~~~~~~~la~~~~~-----~g~~~eA~~~~~~al~ 699 (1157)
T PRK11447 655 AARAQLAKLPATANDSLNTQRRVALAWAA-----LGDTAAAQRTFNRLIP 699 (1157)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHh-----CCCHHHHHHHHHHHhh
Confidence 99999999999999999999999988888 8999999999998853
No 38
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=2.7e-16 Score=108.02 Aligned_cols=152 Identities=20% Similarity=0.253 Sum_probs=115.9
Q ss_pred cHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHH
Q 044796 21 KYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKAL 100 (186)
Q Consensus 21 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 100 (186)
-.+.|+.|++.++...++..+................ ...-...+......+.-+-.-|.-+++.++|++|+..|.+||
T Consensus 30 sleva~qc~e~~f~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI 108 (304)
T KOG0553|consen 30 SLEVAIQCLEAAFGFRRDDVDRAEGTTLLDSFESAER-HPVEILTPEEDKALAESLKNEGNKLMKNKDYQEAVDKYTEAI 108 (304)
T ss_pred HHHHhHHHHHHHhCcchhhccccccccHHHHHHHhcc-CcccccChHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4567888899888888876554433221110000000 000001111122345667788999999999999999999999
Q ss_pred hcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCCC
Q 044796 101 ELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTG 178 (186)
Q Consensus 101 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 178 (186)
+++|+++..|.+++.+|.++|.++.|++..+.++.+||....+|..||.++.. +|++++|++.|+++++.+|.
T Consensus 109 ~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-----~gk~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 109 ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-----LGKYEEAIEAYKKALELDPD 181 (304)
T ss_pred hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-----cCcHHHHHHHHHhhhccCCC
Confidence 99999999999999999999999999999999999999999999999988888 99999999999999644433
No 39
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.70 E-value=3.2e-16 Score=99.55 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=93.3
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
.....+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+..+++++..+|+++..+..+|.++..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhccccccchhhhhcccCCC
Q 044796 154 MGNSILGRFGMSTDNFKAVKDPNT 177 (186)
Q Consensus 154 ~~~~~~~~~~~A~~~~~~~~~~~~ 177 (186)
.|+++.|+..|++++...+
T Consensus 98 -----~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 98 -----LGEPESALKALDLAIEICG 116 (135)
T ss_pred -----cCCHHHHHHHHHHHHHhcc
Confidence 9999999999998864433
No 40
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=7.7e-16 Score=112.81 Aligned_cols=117 Identities=32% Similarity=0.621 Sum_probs=111.0
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
+.++..+..|+.+++.|+|..|+.+|.++|..+|+ ++..|.++|.||
T Consensus 356 e~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~---------------------------------Da~lYsNRAac~ 402 (539)
T KOG0548|consen 356 EKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE---------------------------------DARLYSNRAACY 402 (539)
T ss_pred hHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc---------------------------------hhHHHHHHHHHH
Confidence 34667788899999999999999999999999999 448999999999
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
.+++++..|+..++++++++|++..+|.+.|.++..+.+|+.|++.|.++++++|++.++...+.+|...
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999988876
No 41
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.70 E-value=4.3e-16 Score=115.47 Aligned_cols=162 Identities=13% Similarity=0.088 Sum_probs=111.9
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhh----CCCcchhH-HHHHHHHHHH
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEV----APAPEMAE-LRSICHSNRG 80 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~a 80 (186)
..+..+|.++...|++++|+..|.++++.+|.+..++..++.+. ..++.+.+...+ ...+.... .....+..+|
T Consensus 108 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la 187 (389)
T PRK11788 108 LALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELA 187 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 45677788888888888888888888888887777777776655 334443333322 22221111 1234556777
Q ss_pred HHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHHhh
Q 044796 81 ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN-NQAKRTILRKLKEMGNSIL 159 (186)
Q Consensus 81 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~ 159 (186)
.++...|++++|+..++++++.+|+...+++.+|.++...|++++|+..|++++..+|.+ ..++..++.++.. .
T Consensus 188 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~-----~ 262 (389)
T PRK11788 188 QQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA-----L 262 (389)
T ss_pred HHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH-----c
Confidence 777788888888888888888888877788888888888888888888888888777765 3455666666666 6
Q ss_pred ccccccchhhhhcc
Q 044796 160 GRFGMSTDNFKAVK 173 (186)
Q Consensus 160 ~~~~~A~~~~~~~~ 173 (186)
|++++|+..+++++
T Consensus 263 g~~~~A~~~l~~~~ 276 (389)
T PRK11788 263 GDEAEGLEFLRRAL 276 (389)
T ss_pred CCHHHHHHHHHHHH
Confidence 67777777776654
No 42
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.69 E-value=7.6e-16 Score=110.00 Aligned_cols=101 Identities=24% Similarity=0.298 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL 151 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 151 (186)
.+..|+.+|.++...|++++|+..|+++++.+|+++.+|..+|.++...|++++|+..|+++++++|++..++.++|.++
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL 142 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccccccchhhhhcccCCC
Q 044796 152 KEMGNSILGRFGMSTDNFKAVKDPNT 177 (186)
Q Consensus 152 ~~~~~~~~~~~~~A~~~~~~~~~~~~ 177 (186)
.. .|++++|+..|++++..+|
T Consensus 143 ~~-----~g~~~eA~~~~~~al~~~P 163 (296)
T PRK11189 143 YY-----GGRYELAQDDLLAFYQDDP 163 (296)
T ss_pred HH-----CCCHHHHHHHHHHHHHhCC
Confidence 88 9999999999999864433
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=1.5e-16 Score=115.60 Aligned_cols=160 Identities=19% Similarity=0.216 Sum_probs=123.2
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHH----HhhCCCcchhHHHHHHHHHH
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEK----KEVAPAPEMAELRSICHSNR 79 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 79 (186)
.++.++.+|...+-.+++++|+.-|++++.++|.+.-++..++... ......... .+....|.. +.++...
T Consensus 393 n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~----~Evy~~f 468 (606)
T KOG0547|consen 393 NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC----PEVYNLF 468 (606)
T ss_pred CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----chHHHHH
Confidence 4567888888888888888888888888888888888888877665 333333332 333344433 3888888
Q ss_pred HHHHhhhccHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 044796 80 GICFLKLGKFEESIKECTKALELNPT------YMKALIRRAEAHE-KLEHFEEAIADMKKILEFDPSNNQAKRTILRKLK 152 (186)
Q Consensus 80 a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 152 (186)
|.++..+++|++|+..|++++++.|. ++..+.+.|.+.. =.+++..|+..+++|+++||.+..++..+|.+..
T Consensus 469 AeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~l 548 (606)
T KOG0547|consen 469 AEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFEL 548 (606)
T ss_pred HHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence 88998999999999999999998888 5556666555432 3478888999999999999999999999998888
Q ss_pred HHHHHhhccccccchhhhhcc
Q 044796 153 EMGNSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 153 ~~~~~~~~~~~~A~~~~~~~~ 173 (186)
+ +|+.++|++.|+++.
T Consensus 549 Q-----~~~i~eAielFEksa 564 (606)
T KOG0547|consen 549 Q-----RGKIDEAIELFEKSA 564 (606)
T ss_pred H-----HhhHHHHHHHHHHHH
Confidence 8 888999999998764
No 44
>PLN02789 farnesyltranstransferase
Probab=99.67 E-value=1.3e-15 Score=109.04 Aligned_cols=161 Identities=16% Similarity=0.043 Sum_probs=128.1
Q ss_pred HHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcC--chhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccH--H
Q 044796 15 KLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQ--SASEKKEVAPAPEMAELRSICHSNRGICFLKLGKF--E 90 (186)
Q Consensus 15 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~ 90 (186)
++...+.+++|+..+.++|.++|++..+|..++.+..... ..++...+.......|.+..+|..++.+....|+. +
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 4556789999999999999999999999999988774432 23444443333333334458999999999888874 7
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccc----cccc
Q 044796 91 ESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRF----GMST 166 (186)
Q Consensus 91 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~----~~A~ 166 (186)
+++.+++++++.+|.+..+|..+|.++..+|++++|+.++.++++.+|.+..+|...+.++..++. .+.+ ++.+
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~--l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPL--LGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccc--cccccccHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999988877533 2323 3556
Q ss_pred hhhhhcc--cCCC
Q 044796 167 DNFKAVK--DPNT 177 (186)
Q Consensus 167 ~~~~~~~--~~~~ 177 (186)
.+..+++ +|++
T Consensus 204 ~y~~~aI~~~P~N 216 (320)
T PLN02789 204 KYTIDAILANPRN 216 (320)
T ss_pred HHHHHHHHhCCCC
Confidence 6666665 5543
No 45
>PLN02789 farnesyltranstransferase
Probab=99.67 E-value=1.7e-15 Score=108.49 Aligned_cols=167 Identities=15% Similarity=0.046 Sum_probs=133.1
Q ss_pred hHHHHHHHhHhHHHHcc-cHHHHHHHHHHHHhccCCChhhhhccchhhhh-cCc--hh----HHHhhCCCcchhHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEG-KYEEALLQYEVALRVASVPERAESASAPEAKE-GQS--AS----EKKEVAPAPEMAELRSIC 75 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~--~~----~~~~~~~~~~~~~~~~~~ 75 (186)
+...+|..+|.++...| ++++++..+.+++..+|++..+|..++.+... +.. .. ..+++...+.+ ..+
T Consensus 69 ~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN----y~A 144 (320)
T PLN02789 69 GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN----YHA 144 (320)
T ss_pred hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc----HHH
Confidence 35678899999999988 68999999999999999999999988866532 221 22 22444455544 499
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh---cCH----HHHHHHHHHHHhcCCCChHHHHHHH
Q 044796 76 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL---EHF----EEAIADMKKILEFDPSNNQAKRTIL 148 (186)
Q Consensus 76 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~l~ 148 (186)
|..++.+....|++++|+.+++++++.+|.+..+|+.+|.++... |.+ ++++.+..+++..+|+|..+|..++
T Consensus 145 W~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~ 224 (320)
T PLN02789 145 WSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLR 224 (320)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHH
Confidence 999999999999999999999999999999999999999998876 333 5788899999999999999999999
Q ss_pred HHHHHHHHHhhccccccchhhhhcccC
Q 044796 149 RKLKEMGNSILGRFGMSTDNFKAVKDP 175 (186)
Q Consensus 149 ~~~~~~~~~~~~~~~~A~~~~~~~~~~ 175 (186)
.++...+.. ++...+|++.+..+++.
T Consensus 225 ~ll~~~~~~-l~~~~~~~~~~~~~~~~ 250 (320)
T PLN02789 225 GLFKDDKEA-LVSDPEVSSVCLEVLSK 250 (320)
T ss_pred HHHhcCCcc-cccchhHHHHHHHhhcc
Confidence 888763322 24455577766665443
No 46
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.67 E-value=4.5e-15 Score=99.82 Aligned_cols=127 Identities=13% Similarity=0.081 Sum_probs=98.5
Q ss_pred cccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH-hhhcc--HHHHHH
Q 044796 19 EGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF-LKLGK--FEESIK 94 (186)
Q Consensus 19 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~--~~~A~~ 94 (186)
.++.++++..+++++..+|++.+.|..+|.++ ..++.+.+..++.......|.++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 55666677777777777777777777776655 445555555444444444444569999999975 67777 599999
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHH
Q 044796 95 ECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKR 145 (186)
Q Consensus 95 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 145 (186)
.++++++.+|+++.++..+|.++...|++++|+..|+++++++|.+..-..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~ 182 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQ 182 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence 999999999999999999999999999999999999999999998765443
No 47
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.67 E-value=1e-15 Score=96.91 Aligned_cols=98 Identities=12% Similarity=0.059 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 044796 73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLK 152 (186)
Q Consensus 73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 152 (186)
-...+.+|..+...|++++|...|+.+..++|.++..|+++|.|+..+|++++|+..|.+++.++|+++.+..+.|.|+.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 37788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccchhhhhcccC
Q 044796 153 EMGNSILGRFGMSTDNFKAVKDP 175 (186)
Q Consensus 153 ~~~~~~~~~~~~A~~~~~~~~~~ 175 (186)
. .|+.+.|++.|+.+++.
T Consensus 115 ~-----lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 115 A-----CDNVCYAIKALKAVVRI 132 (157)
T ss_pred H-----cCCHHHHHHHHHHHHHH
Confidence 9 99999999999988643
No 48
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=4.1e-16 Score=108.54 Aligned_cols=171 Identities=13% Similarity=0.071 Sum_probs=143.7
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
+..+...+.++...+++++|.++|+.+++.+|.+.++..-.+.-+ ..++.+-+........+..-.++..++++|.|++
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ 369 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL 369 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence 455677888899999999999999999999999999888777665 4555566666555555555556799999999999
Q ss_pred hhccHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcc
Q 044796 85 KLGKFEESIKECTKALELNP---TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGR 161 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 161 (186)
..++++-++.+|++++..-. .-.++|+++|.+....||+.-|.++|+-++..+|++.+++.+|+..-.. .|+
T Consensus 370 yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r-----~G~ 444 (478)
T KOG1129|consen 370 YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAAR-----SGD 444 (478)
T ss_pred hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhh-----cCc
Confidence 99999999999999997633 3478999999999999999999999999999999999999999987777 899
Q ss_pred ccccchhhhhcccCCCCccc
Q 044796 162 FGMSTDNFKAVKDPNTGAYS 181 (186)
Q Consensus 162 ~~~A~~~~~~~~~~~~~~~~ 181 (186)
.+.|...+..+.+..|.-+.
T Consensus 445 i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 445 ILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred hHHHHHHHHHhhhhCccccc
Confidence 99999999988655544333
No 49
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.66 E-value=6.8e-15 Score=109.12 Aligned_cols=163 Identities=12% Similarity=0.105 Sum_probs=100.1
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHh----hCCCcchhHHHHHHHHHHH
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKE----VAPAPEMAELRSICHSNRG 80 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a 80 (186)
....+..|..+...|++++|+..|.++++.+|++..++..++... ..++...+... +............++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 345566788888888899999999999998888888888877665 44444333332 2211111112335566777
Q ss_pred HHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH-----HHHHHHHHHHHHH
Q 044796 81 ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ-----AKRTILRKLKEMG 155 (186)
Q Consensus 81 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~~ 155 (186)
.++...|++++|+..|+++++.+|.+..++..++.++...|++++|+..+.++++..|.+.. .+..++.++..
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-- 192 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALA-- 192 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHh--
Confidence 77777777777777777777766666666666666666666666666666666665554322 22233333333
Q ss_pred HHhhccccccchhhhhcc
Q 044796 156 NSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~ 173 (186)
.+++++|+..|++++
T Consensus 193 ---~~~~~~A~~~~~~al 207 (389)
T PRK11788 193 ---RGDLDAARALLKKAL 207 (389)
T ss_pred ---CCCHHHHHHHHHHHH
Confidence 555555555555553
No 50
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.65 E-value=7.1e-15 Score=107.78 Aligned_cols=165 Identities=18% Similarity=0.088 Sum_probs=132.2
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-----hhcCchhHHHhhCCCcchhHHHHHHHHHH
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-----KEGQSASEKKEVAPAPEMAELRSICHSNR 79 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (186)
..+.....|..++..|++++|...++++++.+|++..++.. +... ..+........+.......+........+
T Consensus 42 ~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 120 (355)
T cd05804 42 ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGML 120 (355)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHH
Confidence 45567778999999999999999999999999999876653 2111 22333444444433333444455777889
Q ss_pred HHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHHHH
Q 044796 80 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ----AKRTILRKLKEMG 155 (186)
Q Consensus 80 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~ 155 (186)
|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..+.+++...|.++. .+..++.++..
T Consensus 121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~-- 198 (355)
T cd05804 121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE-- 198 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999875433 35567877777
Q ss_pred HHhhccccccchhhhhcccC
Q 044796 156 NSILGRFGMSTDNFKAVKDP 175 (186)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~~~ 175 (186)
.|++++|+..|++++.+
T Consensus 199 ---~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 199 ---RGDYEAALAIYDTHIAP 215 (355)
T ss_pred ---CCCHHHHHHHHHHHhcc
Confidence 99999999999987644
No 51
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=5.6e-15 Score=108.36 Aligned_cols=161 Identities=22% Similarity=0.268 Sum_probs=126.2
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK 85 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (186)
+..+-.+|..+...++++.|+.+|.+++...-. ++... .....+...+.........|..+..-...|..+++
T Consensus 298 ak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-~~~ls------~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 298 AKALARLGNAYTKREDYEGAIKYYQKALTEHRT-PDLLS------KLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK 370 (539)
T ss_pred HHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-HHHHH------HHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh
Confidence 344555888999999999999999998875444 11111 11111222222222222223334566677999999
Q ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccccc
Q 044796 86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMS 165 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A 165 (186)
.|+|..|+..|.+++..+|+++..|.++|.||..+|.+..|+...+.+++++|+...++..-|.++.. +.+|+.|
T Consensus 371 ~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~-----mk~ydkA 445 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA-----MKEYDKA 445 (539)
T ss_pred ccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-----HHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888 9999999
Q ss_pred chhhhhcccCCCC
Q 044796 166 TDNFKAVKDPNTG 178 (186)
Q Consensus 166 ~~~~~~~~~~~~~ 178 (186)
.+.|..++..+|.
T Consensus 446 leay~eale~dp~ 458 (539)
T KOG0548|consen 446 LEAYQEALELDPS 458 (539)
T ss_pred HHHHHHHHhcCch
Confidence 9999998755443
No 52
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.63 E-value=3.7e-14 Score=87.87 Aligned_cols=110 Identities=17% Similarity=0.243 Sum_probs=98.5
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK 85 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (186)
++.++..|..+...|++++|+..|.+++..+|+++ . .+.+++.+|.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------------------~----~~~~~~~l~~~~~~ 51 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST--------------------------Y----APNAHYWLGEAYYA 51 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc--------------------------c----cHHHHHHHHHHHHh
Confidence 46789999999999999999999999999998832 1 12678899999999
Q ss_pred hccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHH
Q 044796 86 LGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKR 145 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 145 (186)
.|++++|+..+++++..+|++ +.+++.+|.++...|++++|+..+.+++...|++..+..
T Consensus 52 ~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 52 QGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred hccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 999999999999999998875 678999999999999999999999999999999876544
No 53
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.62 E-value=2.8e-16 Score=111.66 Aligned_cols=169 Identities=18% Similarity=0.212 Sum_probs=88.7
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh---------------------------------hh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA---------------------------------KE 52 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~---------------------------------~~ 52 (186)
.+.|..+|......++++.|+..|++++..++..+..+..++.+. ..
T Consensus 44 ~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~ 123 (280)
T PF13429_consen 44 PEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQLLQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRL 123 (280)
T ss_dssp --------------------------------------------------------------------------H-HHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHH
Confidence 445556677777777777777777777777666555544443221 11
Q ss_pred cCchhHHHhhCCCcc--hhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHH
Q 044796 53 GQSASEKKEVAPAPE--MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADM 130 (186)
Q Consensus 53 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 130 (186)
++.......+..... ..+.++..|..+|.++.+.|+.++|+..++++++.+|+++.+...++.++...|+++++...+
T Consensus 124 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l 203 (280)
T PF13429_consen 124 GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREAL 203 (280)
T ss_dssp T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 112222222221111 113456788899999999999999999999999999999999999999999999999988888
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCCCc
Q 044796 131 KKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTGA 179 (186)
Q Consensus 131 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 179 (186)
.......|+++..+..+|.++.. +|++++|..+|+++...+|++
T Consensus 204 ~~~~~~~~~~~~~~~~la~~~~~-----lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 204 KRLLKAAPDDPDLWDALAAAYLQ-----LGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHH-HTSCCHCHHHHHHHHH-----HT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHCcCHHHHHHHHHHHhcc-----ccccccccccccccccccccc
Confidence 88888888888899999988888 899999999999886433333
No 54
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.62 E-value=4e-14 Score=95.73 Aligned_cols=129 Identities=17% Similarity=0.161 Sum_probs=114.0
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL 86 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 86 (186)
+.+...|...+..|+|..|+..++++..+.|+ ++.+|..+|.+|.+.
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~---------------------------------d~~~~~~lgaaldq~ 147 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPT---------------------------------DWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhccCCC---------------------------------ChhhhhHHHHHHHHc
Confidence 34445788888888888888888888888888 448999999999999
Q ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccc
Q 044796 87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMST 166 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~ 166 (186)
|++++|...|.+++++.|.++.+..++|+.+.-.|+++.|...+..+...-+.+..+..+++.+... .|++++|.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~-----~g~~~~A~ 222 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGL-----QGDFREAE 222 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhh-----cCChHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999977777 88888888
Q ss_pred hhhhhcc
Q 044796 167 DNFKAVK 173 (186)
Q Consensus 167 ~~~~~~~ 173 (186)
..-.+.+
T Consensus 223 ~i~~~e~ 229 (257)
T COG5010 223 DIAVQEL 229 (257)
T ss_pred hhccccc
Confidence 7765543
No 55
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.62 E-value=4.6e-15 Score=83.12 Aligned_cols=66 Identities=36% Similarity=0.539 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCC
Q 044796 73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE-HFEEAIADMKKILEFDP 138 (186)
Q Consensus 73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p 138 (186)
+..|..+|.+++..|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4789999999999999999999999999999999999999999999999 79999999999999998
No 56
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=8.9e-15 Score=107.96 Aligned_cols=165 Identities=23% Similarity=0.255 Sum_probs=125.1
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhh-cCc---------------------------
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKE-GQS--------------------------- 55 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~--------------------------- 55 (186)
..+-.|+..|.-|+-.|++.+|.++|.++..++|....+|.+.|..+.. +.-
T Consensus 310 ~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgme 389 (611)
T KOG1173|consen 310 SKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGME 389 (611)
T ss_pred CCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHH
Confidence 3456788889888888999999999999999999999999888865522 111
Q ss_pred -------hhHH----HhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc-------CcccHHHHHHHHHHH
Q 044796 56 -------ASEK----KEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALEL-------NPTYMKALIRRAEAH 117 (186)
Q Consensus 56 -------~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~ 117 (186)
+.+. .++...| .++-....+|.+.+..+.|.+|+.+|+.++.. .+.....+.++|.++
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~P----~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIAP----SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcCC----CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 1111 2233333 33466777888888888888888888887732 122445688899999
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcc--cCCC
Q 044796 118 EKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK--DPNT 177 (186)
Q Consensus 118 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~--~~~~ 177 (186)
.+++.+++|+..|++++.+.|.++.++..+|.++.. +|.++.|+++|.+++ +|++
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~l-----lgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHL-----LGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHH-----hcChHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999977777 899999999998884 5543
No 57
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.61 E-value=2.4e-14 Score=114.26 Aligned_cols=162 Identities=9% Similarity=-0.100 Sum_probs=126.9
Q ss_pred hHhHHHHcccHHHHHHHHHHHHhccCCCh----hhhhccchhh-hhcCchhHHHhhCCCcchhH---------------H
Q 044796 12 EGNKLFAEGKYEEALLQYEVALRVASVPE----RAESASAPEA-KEGQSASEKKEVAPAPEMAE---------------L 71 (186)
Q Consensus 12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---------------~ 71 (186)
+|..++..|++++|+.+|++++..+|.+. .....++... ..+..+.+...+.......| .
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~ 357 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDD 357 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCch
Confidence 58889999999999999999998887762 2233333222 33444444433221111111 1
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL 151 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 151 (186)
...++..+|.++...|++++|+..+++++...|+++.++..+|.++...|++++|+..+++++.++|++..++..++.++
T Consensus 358 ~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~a 437 (765)
T PRK10049 358 WLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTA 437 (765)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 23577889999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHHHHHhhccccccchhhhhcccCCCC
Q 044796 152 KEMGNSILGRFGMSTDNFKAVKDPNTG 178 (186)
Q Consensus 152 ~~~~~~~~~~~~~A~~~~~~~~~~~~~ 178 (186)
.. .+++++|+..++.++...|+
T Consensus 438 l~-----~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 438 LD-----LQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred HH-----hCCHHHHHHHHHHHHHhCCC
Confidence 77 89999999999888643333
No 58
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=2e-15 Score=111.26 Aligned_cols=139 Identities=13% Similarity=0.050 Sum_probs=91.8
Q ss_pred HHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhcc
Q 044796 10 KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGK 88 (186)
Q Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 88 (186)
+.+| +++..|+..+-...-.+.++..|+.+-.|+..|..+ -.+....+.+.+......++.-+.+|...|..+...|.
T Consensus 283 ~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~E 361 (611)
T KOG1173|consen 283 LHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGE 361 (611)
T ss_pred HHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcch
Confidence 4456 888889888888888899999999999999999887 44677777777666555555555777777777776666
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796 89 FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR 149 (186)
Q Consensus 89 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 149 (186)
.++|+.+|..|-+.-|......+-+|.-|...++++-|...|.+|+.+.|.+|-+...+|.
T Consensus 362 hdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgv 422 (611)
T KOG1173|consen 362 HDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGV 422 (611)
T ss_pred HHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhh
Confidence 6666666666555555544444444555555555555555555555555544444444433
No 59
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.60 E-value=1.3e-13 Score=91.13 Aligned_cols=107 Identities=33% Similarity=0.419 Sum_probs=91.5
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
..+..++.+|..+...|++++|+.+|+++++..|+. +. .+.++..+|.++
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------~~----~~~~~~~la~~~ 82 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP--------------------------ND----RSYILYNMGIIY 82 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--------------------------ch----HHHHHHHHHHHH
Confidence 457788999999999999999999999999887762 11 136888999999
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcC--------------HHHHHHHHHHHHhcCCCC
Q 044796 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH--------------FEEAIADMKKILEFDPSN 140 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--------------~~~A~~~~~~al~~~p~~ 140 (186)
...|++++|+..+++++...|+++.++..+|.++...|+ +++|+..+++++..+|++
T Consensus 83 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 83 ASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 999999999999999999999999999999999998887 577888888888888876
No 60
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.60 E-value=1.5e-14 Score=96.12 Aligned_cols=95 Identities=19% Similarity=0.168 Sum_probs=47.9
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF--DPSNNQAKRTILRKL 151 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 151 (186)
.+|..+|.+|...|+.+.|.+.|++|+.++|++.+++.+.|..++.+|++++|...|++|+.. -|.-..++.++|.|-
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca 149 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA 149 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence 555555555555555555555555555555555555555555555555555555555555531 122234445555444
Q ss_pred HHHHHHhhccccccchhhhhcc
Q 044796 152 KEMGNSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 152 ~~~~~~~~~~~~~A~~~~~~~~ 173 (186)
.. .|+++.|..+|++++
T Consensus 150 l~-----~gq~~~A~~~l~raL 166 (250)
T COG3063 150 LK-----AGQFDQAEEYLKRAL 166 (250)
T ss_pred hh-----cCCchhHHHHHHHHH
Confidence 44 555555555555553
No 61
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.58 E-value=1.2e-13 Score=110.37 Aligned_cols=156 Identities=12% Similarity=0.078 Sum_probs=121.1
Q ss_pred hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHH
Q 044796 12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFE 90 (186)
Q Consensus 12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 90 (186)
...+..-.|++++|+..|.++...+|....++..++... ..++...+...+.......|.++.++..+|.++...|+++
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~ 100 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD 100 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 334455667777777777777776677666666666555 3444444444333322233334578889999999999999
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhh
Q 044796 91 ESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFK 170 (186)
Q Consensus 91 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~ 170 (186)
+|+..+++++..+|+++. +..+|.++...|++++|+..++++++++|+++.++..++.++.. .+..+.|+..++
T Consensus 101 eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~-----~~~~e~Al~~l~ 174 (765)
T PRK10049 101 EALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN-----NRLSAPALGAID 174 (765)
T ss_pred HHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----CCChHHHHHHHH
Confidence 999999999999999999 99999999999999999999999999999999999999988877 777777777776
Q ss_pred hcc
Q 044796 171 AVK 173 (186)
Q Consensus 171 ~~~ 173 (186)
++.
T Consensus 175 ~~~ 177 (765)
T PRK10049 175 DAN 177 (765)
T ss_pred hCC
Confidence 553
No 62
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.57 E-value=4.8e-13 Score=88.05 Aligned_cols=108 Identities=29% Similarity=0.288 Sum_probs=78.9
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
..+..++.+|.++...|++++|+..|++++.+.|+. . ..+.++.++|.++
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~--------------------------~----~~~~~~~~lg~~~ 82 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP--------------------------Y----DRSYILYNIGLIH 82 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc--------------------------h----hhHHHHHHHHHHH
Confidence 456777888888888888888888888888776651 1 0225778888888
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-------HhcCHH-------HHHHHHHHHHhcCCCCh
Q 044796 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHE-------KLEHFE-------EAIADMKKILEFDPSNN 141 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-------~~g~~~-------~A~~~~~~al~~~p~~~ 141 (186)
...|++++|+..+++++.++|.....+..+|.++. .+|+++ +|+..|++++..+|.+.
T Consensus 83 ~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 83 TSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 88888888888888888888888877777777777 666655 55556666666776543
No 63
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.56 E-value=1e-13 Score=110.00 Aligned_cols=168 Identities=8% Similarity=-0.028 Sum_probs=127.8
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGIC 82 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 82 (186)
..+...+..+.+.++.|+++.|+..|+++++.+|.++.....+..+. ..+....+...++......+........+|.+
T Consensus 32 ~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~l 111 (822)
T PRK14574 32 AMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARA 111 (822)
T ss_pred cchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 35677889999999999999999999999999999853333333333 44666565555444332222334555566889
Q ss_pred HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccc
Q 044796 83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRF 162 (186)
Q Consensus 83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 162 (186)
+..+|++++|+..|+++++.+|+++.++..++.++...++.++|+..++++...+|.+... ..++.++.. .++.
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~-----~~~~ 185 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA-----TDRN 185 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh-----cchH
Confidence 9999999999999999999999999999999999999999999999999999999985554 333333333 4555
Q ss_pred cccchhhhhcccCCC
Q 044796 163 GMSTDNFKAVKDPNT 177 (186)
Q Consensus 163 ~~A~~~~~~~~~~~~ 177 (186)
.+|++.++++++.+|
T Consensus 186 ~~AL~~~ekll~~~P 200 (822)
T PRK14574 186 YDALQASSEAVRLAP 200 (822)
T ss_pred HHHHHHHHHHHHhCC
Confidence 559999998864433
No 64
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.56 E-value=1.9e-13 Score=80.76 Aligned_cols=99 Identities=37% Similarity=0.504 Sum_probs=82.8
Q ss_pred HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796 8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG 87 (186)
Q Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 87 (186)
.++.+|..++..|++++|+..++++++..|.+ ..++..+|.++...+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~ 48 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN---------------------------------ADAYYNLAAAYYKLG 48 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc---------------------------------HHHHHHHHHHHHHHH
Confidence 46778888888888888888888888888872 256778888888888
Q ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 044796 88 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS 139 (186)
Q Consensus 88 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 139 (186)
++++|+..+++++...|.++.++..+|.++...|+++.|...+.++++.+|.
T Consensus 49 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 49 KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 8888888888888888888888888888888888888888888888887763
No 65
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.55 E-value=1.8e-13 Score=92.56 Aligned_cols=152 Identities=17% Similarity=0.134 Sum_probs=120.4
Q ss_pred cccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 044796 19 EGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECT 97 (186)
Q Consensus 19 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 97 (186)
..+...+...+-+....+|.+..+ ..+.... ..++.+.....+.......+.+......+|......|+|.+|+..+.
T Consensus 46 ~~q~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~r 124 (257)
T COG5010 46 MRQTQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLR 124 (257)
T ss_pred HHhhhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 334455777777788889998888 6555544 33444444443333333333344566669999999999999999999
Q ss_pred HHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc-ccCC
Q 044796 98 KALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV-KDPN 176 (186)
Q Consensus 98 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~ 176 (186)
++...+|++.++|..+|.+|.+.|++++|...|.+++++.|.++.+..+++..+.- .|+++.|...+..+ .+|.
T Consensus 125 kA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-----~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 125 KAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-----RGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-----cCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999966666 99999999998776 3443
No 66
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.55 E-value=5.4e-14 Score=77.79 Aligned_cols=65 Identities=23% Similarity=0.357 Sum_probs=60.5
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 044796 77 SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN 141 (186)
Q Consensus 77 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 141 (186)
+.+|..+...|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35789999999999999999999999999999999999999999999999999999999999975
No 67
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.55 E-value=3.3e-13 Score=104.34 Aligned_cols=168 Identities=14% Similarity=0.131 Sum_probs=129.7
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
...++..|+.++..|++++|...+.++|+.+|.++.++.-+|.++ ..|+.+......-......|.+...|..++....
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 677888999999999999999999999999999999999999988 4456655554433333333334489999999999
Q ss_pred hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHH-----HHHHHHHHHHHHHhh
Q 044796 85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAK-----RTILRKLKEMGNSIL 159 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~-----~~l~~~~~~~~~~~~ 159 (186)
++|++.+|+-+|.+|++.+|.+.+..+..+.++.++|+...|.+.|.+.+.+.|....-+ ...+..+.. .
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~-----~ 293 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT-----H 293 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH-----h
Confidence 999999999999999999999999999999999999999999999999999998322111 111222222 5
Q ss_pred ccccccchhhhhcccCCCC
Q 044796 160 GRFGMSTDNFKAVKDPNTG 178 (186)
Q Consensus 160 ~~~~~A~~~~~~~~~~~~~ 178 (186)
++-+.|++.++.+++...+
T Consensus 294 ~~~e~a~~~le~~~s~~~~ 312 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKD 312 (895)
T ss_pred hHHHHHHHHHHHHHhhccc
Confidence 5557888887777664333
No 68
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.54 E-value=7.4e-14 Score=78.17 Aligned_cols=67 Identities=34% Similarity=0.574 Sum_probs=63.8
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
.+..|..+|.+++..|++++|+.+|+++++++|+ ++.+++++|.++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~---------------------------------~~~~~~~~g~~~~ 48 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN---------------------------------NAEAYYNLGLAYM 48 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT---------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---------------------------------CHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999 4589999999999
Q ss_pred hhc-cHHHHHHHHHHHHhcCc
Q 044796 85 KLG-KFEESIKECTKALELNP 104 (186)
Q Consensus 85 ~~~-~~~~A~~~~~~al~~~p 104 (186)
.+| ++++|+..++++++++|
T Consensus 49 ~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 49 KLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HTTTHHHHHHHHHHHHHHHST
T ss_pred HhCccHHHHHHHHHHHHHcCc
Confidence 999 89999999999999988
No 69
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.54 E-value=3.9e-13 Score=90.61 Aligned_cols=149 Identities=21% Similarity=0.145 Sum_probs=114.2
Q ss_pred HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhc-cchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796 8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESA-SAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL 86 (186)
Q Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 86 (186)
.....|..+-..|.+++|+++|+..++-+|.+..++-. ++.+...+....+.+.+.......+.+..+|..++.+|...
T Consensus 88 V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~ 167 (289)
T KOG3060|consen 88 VGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSE 167 (289)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhH
Confidence 34456777888899999999999999999887766654 33344556665665555444444444558999999999999
Q ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 044796 87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLE---HFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN 156 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 156 (186)
|+|++|.-|+++.+-+.|.++..+.++|.+++.+| ++.-|..+|.++++++|.+..+++.+..+-..+..
T Consensus 168 ~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~ 240 (289)
T KOG3060|consen 168 GDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQ 240 (289)
T ss_pred hHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888998888777 45668889999999999888888887766665554
No 70
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.54 E-value=7.6e-14 Score=101.98 Aligned_cols=98 Identities=23% Similarity=0.295 Sum_probs=91.6
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 044796 76 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG 155 (186)
Q Consensus 76 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 155 (186)
+...|...+..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..+++++.++|+++.++..+|.++..
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-- 82 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-- 82 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH--
Confidence 566789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhccccccchhhhhcccCCCC
Q 044796 156 NSILGRFGMSTDNFKAVKDPNTG 178 (186)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~~~~~~ 178 (186)
+|++++|+..|++++..+++
T Consensus 83 ---lg~~~eA~~~~~~al~l~P~ 102 (356)
T PLN03088 83 ---LEEYQTAKAALEKGASLAPG 102 (356)
T ss_pred ---hCCHHHHHHHHHHHHHhCCC
Confidence 99999999999998644443
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.53 E-value=2.8e-13 Score=103.26 Aligned_cols=130 Identities=22% Similarity=0.204 Sum_probs=120.1
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL 86 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 86 (186)
..|...|..+...+..++|..|+.++-.++|- ....|+..|.++...
T Consensus 651 ~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l---------------------------------~~~~~~~~G~~~~~~ 697 (799)
T KOG4162|consen 651 KLWLLAADLFLLSGNDDEARSCLLEASKIDPL---------------------------------SASVYYLRGLLLEVK 697 (799)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHhcchh---------------------------------hHHHHHHhhHHHHHH
Confidence 45667788888888899999999999888887 448999999999999
Q ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHH--HHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccc
Q 044796 87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA--DMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGM 164 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~--~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (186)
|++.+|.+.|..++.++|+++....-+|.++...|+..-|.. .+..+++++|.++++|+.+|.++.. +|+.+.
T Consensus 698 ~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-----~Gd~~~ 772 (799)
T KOG4162|consen 698 GQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-----LGDSKQ 772 (799)
T ss_pred HhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-----ccchHH
Confidence 999999999999999999999999999999999999988888 9999999999999999999999999 999999
Q ss_pred cchhhhhccc
Q 044796 165 STDNFKAVKD 174 (186)
Q Consensus 165 A~~~~~~~~~ 174 (186)
|.++|..++.
T Consensus 773 Aaecf~aa~q 782 (799)
T KOG4162|consen 773 AAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHh
Confidence 9999998853
No 72
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.53 E-value=4.4e-13 Score=97.77 Aligned_cols=136 Identities=21% Similarity=0.216 Sum_probs=123.8
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
....++..+...+..|++++|...+...+...|+ ++..+...+.++.
T Consensus 305 ~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~---------------------------------N~~~~~~~~~i~~ 351 (484)
T COG4783 305 GLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD---------------------------------NPYYLELAGDILL 351 (484)
T ss_pred chHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC---------------------------------CHHHHHHHHHHHH
Confidence 3456788899999999999999999999999999 3378888999999
Q ss_pred hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH-------
Q 044796 85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS------- 157 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~------- 157 (186)
..++..+|++.+++++..+|+.+..+.++|.++...|++.+|+..+++.+..+|+++..|..|++++..+|+.
T Consensus 352 ~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 352 EANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988865
Q ss_pred -----hhccccccchhhhhcc
Q 044796 158 -----ILGRFGMSTDNFKAVK 173 (186)
Q Consensus 158 -----~~~~~~~A~~~~~~~~ 173 (186)
..|+++.|+..+..+.
T Consensus 432 AE~~~~~G~~~~A~~~l~~A~ 452 (484)
T COG4783 432 AEGYALAGRLEQAIIFLMRAS 452 (484)
T ss_pred HHHHHhCCCHHHHHHHHHHHH
Confidence 4778888888887764
No 73
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.53 E-value=5.6e-13 Score=89.86 Aligned_cols=165 Identities=15% Similarity=0.042 Sum_probs=137.1
Q ss_pred HhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccH
Q 044796 11 LEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKF 89 (186)
Q Consensus 11 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (186)
+........|+.+.|..|+++.-...|....+...-|..+ ..+..+++...+....+.+|.+..++-..-.+...+|+-
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc
Confidence 3455667889999999999999999999888777777666 344555555555444444455556776666777788999
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhh
Q 044796 90 EESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNF 169 (186)
Q Consensus 90 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~ 169 (186)
-+||+.+...++..+.++++|..++.+|...|+|++|.-++++++-+.|.++-.+..++.++..+|. ...+..|.++|
T Consensus 137 l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg--~eN~~~arkyy 214 (289)
T KOG3060|consen 137 LEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG--AENLELARKYY 214 (289)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh--HHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999887 66778889999
Q ss_pred hhcccCCC
Q 044796 170 KAVKDPNT 177 (186)
Q Consensus 170 ~~~~~~~~ 177 (186)
.++++.++
T Consensus 215 ~~alkl~~ 222 (289)
T KOG3060|consen 215 ERALKLNP 222 (289)
T ss_pred HHHHHhCh
Confidence 99876554
No 74
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.53 E-value=3.6e-14 Score=110.38 Aligned_cols=170 Identities=18% Similarity=0.164 Sum_probs=101.8
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhh-cCchhH-------HHhhCCCc-----------
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKE-GQSASE-------KKEVAPAP----------- 66 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~-------~~~~~~~~----------- 66 (186)
++....+|.|+++.|+.+.|+..|.++++++|.+..+..++|..... .+.+.. ..++...+
T Consensus 199 aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn 278 (1018)
T KOG2002|consen 199 ADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLAN 278 (1018)
T ss_pred CCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence 34445668888899999999999999999999888888888855422 111111 11111111
Q ss_pred ----------------------chhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHhcCH
Q 044796 67 ----------------------EMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY-MKALIRRAEAHEKLEHF 123 (186)
Q Consensus 67 ----------------------~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~ 123 (186)
...+..+..++++|.++..+|+|++|..+|.++++.+|++ .-+++.+|..+...|++
T Consensus 279 ~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl 358 (1018)
T KOG2002|consen 279 HFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL 358 (1018)
T ss_pred HHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchH
Confidence 1112233445666666666666666666666666666665 55566666666666666
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCC
Q 044796 124 EEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPN 176 (186)
Q Consensus 124 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 176 (186)
+.|..+|+++++..|++.++...+|.++...+ ......+.|.....+++.+.
T Consensus 359 e~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~-~~~~~~d~a~~~l~K~~~~~ 410 (1018)
T KOG2002|consen 359 EESKFCFEKVLKQLPNNYETMKILGCLYAHSA-KKQEKRDKASNVLGKVLEQT 410 (1018)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh-hhhHHHHHHHHHHHHHHhcc
Confidence 66666666666666666666666665555522 11234455555555554433
No 75
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=6e-14 Score=100.31 Aligned_cols=144 Identities=28% Similarity=0.502 Sum_probs=97.1
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccc------------hhh-hhcC----chhHHHhhCCCcc
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASA------------PEA-KEGQ----SASEKKEVAPAPE 67 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~------------~~~-~~~~----~~~~~~~~~~~~~ 67 (186)
.+++++..|.+++..++.+.|+.+|++++.++|++..+-...- ... ..+. .+.+..++...|.
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~ 281 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS 281 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc
Confidence 4677778888888888888888888888888887655432221 111 1111 1444556677777
Q ss_pred hhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796 68 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI 147 (186)
Q Consensus 68 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 147 (186)
+...++.+|.++|.+....|+..+|+..++.++.++|....++...|.|+..++++++|++.|+++++...+ .+.+..+
T Consensus 282 n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l 360 (486)
T KOG0550|consen 282 NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTL 360 (486)
T ss_pred ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHH
Confidence 666667777777777777777777777777777777777777777777777777777777777777776655 4444444
Q ss_pred HH
Q 044796 148 LR 149 (186)
Q Consensus 148 ~~ 149 (186)
..
T Consensus 361 ~~ 362 (486)
T KOG0550|consen 361 RE 362 (486)
T ss_pred HH
Confidence 43
No 76
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.53 E-value=1.4e-13 Score=96.73 Aligned_cols=113 Identities=35% Similarity=0.579 Sum_probs=104.2
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
+.+..+.+.|+.|+++|.|++|+.||.+++..+|.+ +..+.++|.+|
T Consensus 95 ~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~N---------------------------------pV~~~NRA~AY 141 (536)
T KOG4648|consen 95 KKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHN---------------------------------PVYHINRALAY 141 (536)
T ss_pred HhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCC---------------------------------ccchhhHHHHH
Confidence 455668899999999999999999999999999983 27788999999
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR 149 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 149 (186)
++.+.|..|...|+.|+.++..+..+|.++|.+...+|...+|...++.++.+.|++.+....++.
T Consensus 142 lk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~ 207 (536)
T KOG4648|consen 142 LKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLAR 207 (536)
T ss_pred HHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998887766654
No 77
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.51 E-value=5.3e-13 Score=93.87 Aligned_cols=164 Identities=18% Similarity=0.259 Sum_probs=105.0
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGIC 82 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 82 (186)
..++.++.+|..++..|++..|+..|..|++.+|++-.+.+..+..+ ..+....+...+....+..|+...+...+|.+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~v 115 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVV 115 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchh
Confidence 45677899999999999999999999999999999988888877665 44444333333332223333334777888888
Q ss_pred HhhhccHHHHHHHHHHHHhcCcccH---HH------------HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796 83 FLKLGKFEESIKECTKALELNPTYM---KA------------LIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI 147 (186)
Q Consensus 83 ~~~~~~~~~A~~~~~~al~~~p~~~---~~------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 147 (186)
++++|++++|+..|+.++..+|.+. ++ +......++..|++..|+.+....+++.|=+...+...
T Consensus 116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~R 195 (504)
T KOG0624|consen 116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQAR 195 (504)
T ss_pred hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHH
Confidence 8888888888888888888877431 11 11112223344555555555555555555555555555
Q ss_pred HHHHHHHHHHhhccccccchhhhhc
Q 044796 148 LRKLKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 148 ~~~~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
+.|+.. .|+...||..++.+
T Consensus 196 akc~i~-----~~e~k~AI~Dlk~a 215 (504)
T KOG0624|consen 196 AKCYIA-----EGEPKKAIHDLKQA 215 (504)
T ss_pred HHHHHh-----cCcHHHHHHHHHHH
Confidence 555555 44444444444443
No 78
>PRK15331 chaperone protein SicA; Provisional
Probab=99.51 E-value=1.5e-12 Score=83.05 Aligned_cols=108 Identities=7% Similarity=0.045 Sum_probs=97.8
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
.-+..+..|..++..|++++|...|+-....+|. +++.|..+|.|+.
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~---------------------------------n~~Y~~GLaa~~Q 82 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY---------------------------------NPDYTMGLAAVCQ 82 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC---------------------------------cHHHHHHHHHHHH
Confidence 3467888999999999999999999999999998 3378999999999
Q ss_pred hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHH
Q 044796 85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRT 146 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 146 (186)
.+++|++|+..|..+..+++++|.+.+..|.|+..+|+.+.|..+|..++. .|.+......
T Consensus 83 ~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~ 143 (165)
T PRK15331 83 LKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAK 143 (165)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHH
Confidence 999999999999999999999999999999999999999999999999998 5776655443
No 79
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.51 E-value=1.7e-13 Score=79.71 Aligned_cols=84 Identities=33% Similarity=0.504 Sum_probs=70.0
Q ss_pred HcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 044796 18 AEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECT 97 (186)
Q Consensus 18 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 97 (186)
..|+++.|+..|+++++..|.+ + +...++.+|.+++..|+|++|+..++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~--------------------------~-----~~~~~~~la~~~~~~~~y~~A~~~~~ 49 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTN--------------------------P-----NSAYLYNLAQCYFQQGKYEEAIELLQ 49 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGT--------------------------H-----HHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCC--------------------------h-----hHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3688999999999999998862 1 22577779999999999999999999
Q ss_pred HHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796 98 KALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKI 133 (186)
Q Consensus 98 ~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (186)
+ .+.+|.++..++.+|.|+..+|++++|+..|+++
T Consensus 50 ~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 50 K-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp C-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred H-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 9 8888888888888999999999999999998875
No 80
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.51 E-value=6.6e-14 Score=101.79 Aligned_cols=171 Identities=15% Similarity=0.066 Sum_probs=140.6
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
+.++.+.|++.+..|++++|.+.|++++.-+....++++..|... ..+..+++...+-..-....-+..+++.++.+|.
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye 569 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE 569 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 556778889999999999999999999999999999999999877 4555566655543322222334588899999999
Q ss_pred hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccc
Q 044796 85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGM 164 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (186)
.+.+..+|++++-++..+-|++|.++..+|.+|-+.|+..+|.+++-......|-+.++..+|+..+.. ..-.+.
T Consensus 570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyid-----tqf~ek 644 (840)
T KOG2003|consen 570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYID-----TQFSEK 644 (840)
T ss_pred HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHh-----hHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999888877 677788
Q ss_pred cchhhhhc--ccCCCCccc
Q 044796 165 STDNFKAV--KDPNTGAYS 181 (186)
Q Consensus 165 A~~~~~~~--~~~~~~~~~ 181 (186)
|+.+|+++ +.|+-..|+
T Consensus 645 ai~y~ekaaliqp~~~kwq 663 (840)
T KOG2003|consen 645 AINYFEKAALIQPNQSKWQ 663 (840)
T ss_pred HHHHHHHHHhcCccHHHHH
Confidence 88899877 466544333
No 81
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=6.2e-13 Score=95.25 Aligned_cols=109 Identities=22% Similarity=0.309 Sum_probs=80.5
Q ss_pred hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhh----ccchhh-hhcCchhH----HHhhCCCcchhHHHH
Q 044796 3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAES----ASAPEA-KEGQSASE----KKEVAPAPEMAELRS 73 (186)
Q Consensus 3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~----~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~ 73 (186)
.+..+.+...|+..++.|++.+|.++|..+|.++|++..... +++... ..+...++ ..++...+.. .
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy----i 321 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY----I 321 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH----H
Confidence 356678899999999999999999999999999999765433 333333 33333333 3444444444 4
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA 116 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 116 (186)
.++..+|.|+..+++|++|++.++++++...+ ......+..+
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A 363 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREA 363 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHH
Confidence 89999999999999999999999999998665 4444444433
No 82
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.50 E-value=2.8e-12 Score=82.34 Aligned_cols=134 Identities=13% Similarity=0.123 Sum_probs=112.5
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
+.+...+......+..+++..+...+++.++.+|+.+ ....+...+|.++
T Consensus 9 ~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~------------------------------ya~~A~l~lA~~~ 58 (145)
T PF09976_consen 9 EQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP------------------------------YAALAALQLAKAA 58 (145)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------------------------------HHHHHHHHHHHHH
Confidence 4566677777777889999999999999999988832 1237788899999
Q ss_pred hhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 044796 84 LKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILG 160 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 160 (186)
...|++++|+..|+.++...|+. +.+.+++|.++...|++++|+..+.. +.-.+-.+.++..+|.++.. .|
T Consensus 59 ~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~-----~g 132 (145)
T PF09976_consen 59 YEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLA-----QG 132 (145)
T ss_pred HHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHH-----CC
Confidence 99999999999999999987654 56888999999999999999999966 34455567788888988888 99
Q ss_pred cccccchhhhhcc
Q 044796 161 RFGMSTDNFKAVK 173 (186)
Q Consensus 161 ~~~~A~~~~~~~~ 173 (186)
++++|+..|++++
T Consensus 133 ~~~~A~~~y~~Al 145 (145)
T PF09976_consen 133 DYDEARAAYQKAL 145 (145)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999998764
No 83
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.49 E-value=5.2e-13 Score=78.82 Aligned_cols=97 Identities=31% Similarity=0.469 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 044796 75 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEM 154 (186)
Q Consensus 75 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 154 (186)
+++.+|.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..+.+++...|.++.++..++.++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~- 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK- 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHhhccccccchhhhhcccCC
Q 044796 155 GNSILGRFGMSTDNFKAVKDPN 176 (186)
Q Consensus 155 ~~~~~~~~~~A~~~~~~~~~~~ 176 (186)
.++++.|...+..++...
T Consensus 81 ----~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 81 ----LGKYEEALEAYEKALELD 98 (100)
T ss_pred ----HHhHHHHHHHHHHHHccC
Confidence 888889999998876543
No 84
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.49 E-value=5.9e-13 Score=103.79 Aligned_cols=152 Identities=20% Similarity=0.181 Sum_probs=127.7
Q ss_pred HHHHHHhHhHHHH------------cccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHH
Q 044796 6 ANEAKLEGNKLFA------------EGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELR 72 (186)
Q Consensus 6 a~~~~~~g~~~~~------------~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 72 (186)
+..+..+|+.++. .+.+++|+.+|.++|+.+|.|..+-.++|.++ ..+....+...+....+.....
T Consensus 600 ~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~ 679 (1018)
T KOG2002|consen 600 AYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDF 679 (1018)
T ss_pred hhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhC
Confidence 4566778887653 45689999999999999999999999999887 4455555555444333333334
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796 73 SICHSNRGICFLKLGKFEESIKECTKALELN--PTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK 150 (186)
Q Consensus 73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 150 (186)
+.+|.++|.||..+|+|..|++.|+.+++.. .+++.++..||.+++..|.+.+|...+.+++.+.|.++.+.++++.+
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 4899999999999999999999999999863 35688999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 044796 151 LKEMGNS 157 (186)
Q Consensus 151 ~~~~~~~ 157 (186)
+..++..
T Consensus 760 ~kkla~s 766 (1018)
T KOG2002|consen 760 LKKLAES 766 (1018)
T ss_pred HHHHHHH
Confidence 9998876
No 85
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.48 E-value=5.1e-12 Score=88.25 Aligned_cols=110 Identities=13% Similarity=0.125 Sum_probs=96.2
Q ss_pred HHHHHHhHhHH-HHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 6 ANEAKLEGNKL-FAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 6 a~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
....+..|..+ +..|+|++|+..|++.++..|+. + ..+.+++.+|.+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s--------------------------~----~a~~A~y~LG~~y~ 191 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS--------------------------T----YQPNANYWLGQLNY 191 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC--------------------------c----chHHHHHHHHHHHH
Confidence 35677888876 56799999999999999999993 2 12378999999999
Q ss_pred hhccHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHH
Q 044796 85 KLGKFEESIKECTKALELNPT---YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKR 145 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 145 (186)
..|++++|+..|++++...|+ .+.+++.+|.++..+|++++|...|+++++..|++..+..
T Consensus 192 ~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 192 NKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 999999999999999988777 4789999999999999999999999999999999876543
No 86
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=3e-13 Score=94.51 Aligned_cols=158 Identities=11% Similarity=0.010 Sum_probs=119.4
Q ss_pred HHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhcc
Q 044796 10 KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGK 88 (186)
Q Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 88 (186)
.++|.|++..|.+.+|.+.++.+++..|- ++.+..++..+ ..++...+...+....+..|.+.......|.++..+++
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 36899999999999999999999998776 55566666665 33445555555544444444555888889999999999
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchh
Q 044796 89 FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDN 168 (186)
Q Consensus 89 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~ 168 (186)
+++|++.|+.+++.+|.+.++...+|.-|+.-++++-|+.+|++.+++.-.+++...++|.|... .++++.+..+
T Consensus 306 ~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~y-----aqQ~D~~L~s 380 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLY-----AQQIDLVLPS 380 (478)
T ss_pred HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHh-----hcchhhhHHH
Confidence 99999999999999998877777777777777777777777777777777777777777766555 6677777777
Q ss_pred hhhcc
Q 044796 169 FKAVK 173 (186)
Q Consensus 169 ~~~~~ 173 (186)
|++++
T Consensus 381 f~RAl 385 (478)
T KOG1129|consen 381 FQRAL 385 (478)
T ss_pred HHHHH
Confidence 76664
No 87
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.47 E-value=9.2e-13 Score=81.58 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN---NQAKRTI 147 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 147 (186)
..++.+|..+...|++++|+..|++++..+|++ +.+++.+|.++...|++++|+..|++++..+|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 678999999999999999999999999999876 5789999999999999999999999999999885 6789999
Q ss_pred HHHHHHHHHHhhccccccchhhhhcccC
Q 044796 148 LRKLKEMGNSILGRFGMSTDNFKAVKDP 175 (186)
Q Consensus 148 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 175 (186)
+.++.. .+++++|+..+..++..
T Consensus 83 ~~~~~~-----~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQE-----LGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHH-----hCChHHHHHHHHHHHHH
Confidence 999888 99999999999988643
No 88
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.46 E-value=1e-12 Score=99.83 Aligned_cols=166 Identities=14% Similarity=0.085 Sum_probs=127.7
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
++.+.|-....||...|+-.+|.....+-++ .|.++..|..+|..... ..-..++.+..... ++.+...+|...
T Consensus 422 Erlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d--~s~yEkawElsn~~---sarA~r~~~~~~ 495 (777)
T KOG1128|consen 422 ERLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHD--PSLYEKAWELSNYI---SARAQRSLALLI 495 (777)
T ss_pred HhHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccC--hHHHHHHHHHhhhh---hHHHHHhhcccc
Confidence 4566778888899999999999999888888 67777788888765532 22222332222111 235566677777
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG 163 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (186)
...++|+++..+++..++++|-....|+.+|.+..++++++.|..+|.+++.++|++.++|++++.++.. .++-.
T Consensus 496 ~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-----~~~k~ 570 (777)
T KOG1128|consen 496 LSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-----LKKKK 570 (777)
T ss_pred ccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-----HhhhH
Confidence 7788999999999999999999999999999999999999999999999999999999999999988888 77777
Q ss_pred ccchhhhhcccCCCCcc
Q 044796 164 MSTDNFKAVKDPNTGAY 180 (186)
Q Consensus 164 ~A~~~~~~~~~~~~~~~ 180 (186)
+|...++.++.-+...+
T Consensus 571 ra~~~l~EAlKcn~~~w 587 (777)
T KOG1128|consen 571 RAFRKLKEALKCNYQHW 587 (777)
T ss_pred HHHHHHHHHhhcCCCCC
Confidence 77777777764443333
No 89
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.45 E-value=2.4e-12 Score=100.74 Aligned_cols=101 Identities=10% Similarity=0.078 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 044796 73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLK 152 (186)
Q Consensus 73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 152 (186)
+.++..+|.+....|.+++|...++.+++..|++..++..++.++.+++++++|+..+++++..+|+++.++..+|.++.
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~ 165 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccchhhhhcccCCCC
Q 044796 153 EMGNSILGRFGMSTDNFKAVKDPNTG 178 (186)
Q Consensus 153 ~~~~~~~~~~~~A~~~~~~~~~~~~~ 178 (186)
. +|++++|++.|++++.++++
T Consensus 166 ~-----~g~~~~A~~~y~~~~~~~p~ 186 (694)
T PRK15179 166 E-----IGQSEQADACFERLSRQHPE 186 (694)
T ss_pred H-----hcchHHHHHHHHHHHhcCCC
Confidence 9 99999999999999866554
No 90
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.45 E-value=1.9e-12 Score=97.30 Aligned_cols=160 Identities=14% Similarity=0.162 Sum_probs=141.6
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
-..+|..+.-.+..++|...++..+.+++.+|++++.....|... ..+...++...+.....+++.+.-+|..+|.++.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 456888899999999999999999999999999999999999877 5566677776666555566666699999999999
Q ss_pred hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccc
Q 044796 85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGM 164 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (186)
..++|++|+.+|..|+.++|++..+|..++.+..++++++.......+.+++.|..-..|..++.+... .|.+..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L-----~g~y~~ 161 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHL-----LGEYKM 161 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHH-----HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999977777 666666
Q ss_pred cchhhh
Q 044796 165 STDNFK 170 (186)
Q Consensus 165 A~~~~~ 170 (186)
|....+
T Consensus 162 A~~il~ 167 (700)
T KOG1156|consen 162 ALEILE 167 (700)
T ss_pred HHHHHH
Confidence 666554
No 91
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.45 E-value=1.6e-12 Score=85.52 Aligned_cols=106 Identities=15% Similarity=0.118 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL 148 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 148 (186)
....+..+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|++++|+..+++++.++|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 45788999999999999999999999999887653 458999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH--hhcccc-------ccchhhhhcccCCC
Q 044796 149 RKLKEMGNS--ILGRFG-------MSTDNFKAVKDPNT 177 (186)
Q Consensus 149 ~~~~~~~~~--~~~~~~-------~A~~~~~~~~~~~~ 177 (186)
.++..+|.. ..|+++ +|+..|++++..+|
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p 151 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAP 151 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999966643 255544 66666666654444
No 92
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.45 E-value=1.6e-12 Score=85.92 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796 71 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI 147 (186)
Q Consensus 71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 147 (186)
..+..++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+.+++...|.+...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 355789999999999999999999999999887653 56899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH---------hhccccccchhhhhcccCCCCcc
Q 044796 148 LRKLKEMGNS---------ILGRFGMSTDNFKAVKDPNTGAY 180 (186)
Q Consensus 148 ~~~~~~~~~~---------~~~~~~~A~~~~~~~~~~~~~~~ 180 (186)
+.++..+|.. ....++.|.+.+++++..+|+.+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 9999886652 12335667777777665554443
No 93
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.44 E-value=1.5e-13 Score=79.97 Aligned_cols=81 Identities=32% Similarity=0.457 Sum_probs=72.9
Q ss_pred hccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796 86 LGKFEESIKECTKALELNPT--YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG 163 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (186)
.|++++|+..++++++.+|. +...++.+|.|++..|++++|+..+++ .+.+|.++..+..+|.++.. +|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-----l~~y~ 75 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-----LGKYE 75 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-----TT-HH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-----hCCHH
Confidence 68999999999999999995 567788899999999999999999999 88999999999999999999 99999
Q ss_pred ccchhhhhc
Q 044796 164 MSTDNFKAV 172 (186)
Q Consensus 164 ~A~~~~~~~ 172 (186)
+|++.|+++
T Consensus 76 eAi~~l~~~ 84 (84)
T PF12895_consen 76 EAIKALEKA 84 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999998764
No 94
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.44 E-value=5.8e-12 Score=87.84 Aligned_cols=164 Identities=12% Similarity=0.097 Sum_probs=112.6
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCc-----hhHHHhhCCCcchhH-HHHHHHHH
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQS-----ASEKKEVAPAPEMAE-LRSICHSN 78 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~ 78 (186)
+.-++.++|..|...|-++.|...|....+...--+.+...+..++..... +.+.+.....++... ..+..|+.
T Consensus 106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCE 185 (389)
T COG2956 106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCE 185 (389)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHH
Confidence 344566666666666666666666666555433334444444444422211 222223333332222 23578888
Q ss_pred HHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHHHHH
Q 044796 79 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN-NQAKRTILRKLKEMGNS 157 (186)
Q Consensus 79 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~ 157 (186)
+|..+....+++.|+..+.+|++.+|++..+-..+|.+....|+|+.|++.++.+++.||+. +++...|..+|..
T Consensus 186 LAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~---- 261 (389)
T COG2956 186 LAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ---- 261 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH----
Confidence 99988888999999999999999999999999999999999999999999999999999885 6778888888888
Q ss_pred hhccccccchhhhhcc
Q 044796 158 ILGRFGMSTDNFKAVK 173 (186)
Q Consensus 158 ~~~~~~~A~~~~~~~~ 173 (186)
+|+.++....+..+.
T Consensus 262 -lg~~~~~~~fL~~~~ 276 (389)
T COG2956 262 -LGKPAEGLNFLRRAM 276 (389)
T ss_pred -hCCHHHHHHHHHHHH
Confidence 666666666665553
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.44 E-value=2.3e-12 Score=89.37 Aligned_cols=134 Identities=16% Similarity=0.084 Sum_probs=101.4
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChh---hhhccchhhhh---------cCchhHH----HhhCCCcchh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPER---AESASAPEAKE---------GQSASEK----KEVAPAPEMA 69 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~~~---------~~~~~~~----~~~~~~~~~~ 69 (186)
..+++.+|.+++..|++++|+..|+++++.+|+++. +++.+|.+... ++...+. ..+...|...
T Consensus 70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 149 (235)
T TIGR03302 70 EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE 149 (235)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh
Confidence 357899999999999999999999999999998887 56666665532 2222222 2233333322
Q ss_pred HHH-------------HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796 70 ELR-------------SICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKI 133 (186)
Q Consensus 70 ~~~-------------~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (186)
... ......+|..+...|++.+|+..+++++...|+. +.+++.+|.++..+|++++|..+++..
T Consensus 150 ~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 150 YAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 110 0122467889999999999999999999997654 689999999999999999999998888
Q ss_pred HhcCCC
Q 044796 134 LEFDPS 139 (186)
Q Consensus 134 l~~~p~ 139 (186)
....|+
T Consensus 230 ~~~~~~ 235 (235)
T TIGR03302 230 GANYPD 235 (235)
T ss_pred HhhCCC
Confidence 766653
No 96
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.44 E-value=1.6e-12 Score=71.84 Aligned_cols=65 Identities=25% Similarity=0.417 Sum_probs=59.3
Q ss_pred HHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccH
Q 044796 10 KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKF 89 (186)
Q Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (186)
+.+|..++..|++++|+.+|+++++.+|+ ++.++..+|.++..+|++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~---------------------------------~~~a~~~lg~~~~~~g~~ 47 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPD---------------------------------NPEAWYLLGRILYQQGRY 47 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTT---------------------------------HHHHHHHHHHHHHHTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCC---------------------------------CHHHHHHHHHHHHHcCCH
Confidence 46799999999999999999999999999 458999999999999999
Q ss_pred HHHHHHHHHHHhcCcccH
Q 044796 90 EESIKECTKALELNPTYM 107 (186)
Q Consensus 90 ~~A~~~~~~al~~~p~~~ 107 (186)
++|+..|+++++.+|++|
T Consensus 48 ~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 48 DEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHHHHHHHCcCCC
Confidence 999999999999999875
No 97
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.43 E-value=6.1e-12 Score=95.72 Aligned_cols=137 Identities=15% Similarity=0.063 Sum_probs=105.8
Q ss_pred HHHHHHHhHhHHHHcc---cHHHHHHHHHHHHhccCCChhhhhccchhhhh----c-----CchhHHHhhCCCcc--hhH
Q 044796 5 EANEAKLEGNKLFAEG---KYEEALLQYEVALRVASVPERAESASAPEAKE----G-----QSASEKKEVAPAPE--MAE 70 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~--~~~ 70 (186)
.+-.++..|..++..+ ....|+.+|+++++++|++..++..++..... . ....+......... ..+
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~ 417 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELN 417 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCc
Confidence 4566788888887654 48899999999999999999988887664411 1 01112222221111 122
Q ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH
Q 044796 71 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ 142 (186)
Q Consensus 71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 142 (186)
..+.++..+|..+...|++++|...+++++.++| +..+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 3457788889999899999999999999999999 4789999999999999999999999999999999885
No 98
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.4e-12 Score=93.61 Aligned_cols=149 Identities=15% Similarity=0.134 Sum_probs=126.2
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
....+-.+|.+++..|++.+|+..|+++..++|....+.-..|.+. ..++.+.........-.........|+.-|...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l 310 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL 310 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh
Confidence 3456778999999999999999999999999999998888877766 445544444333222222233457888899999
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
+..++++.|+.+.++++..+|.+..++...|.++..+|+.++|+-.|+.|..+.|..-+++..+-.+|..
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA 380 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999888877
No 99
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=8.2e-12 Score=91.10 Aligned_cols=153 Identities=14% Similarity=0.019 Sum_probs=127.7
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGIC 82 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 82 (186)
..++.+++++++|....+..+|++.|-++..+-|.+|.++..++.++ .+++...+....-..-...|-+....-++|..
T Consensus 556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ay 635 (840)
T KOG2003|consen 556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAY 635 (840)
T ss_pred hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999888 55555544443222222222333777789999
Q ss_pred HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 044796 83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN 156 (186)
Q Consensus 83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 156 (186)
|....-+++|+.+|+++--+.|+...+....+.|+.+.|+|+.|++.|+......|.+.+++..|.++.-.+|.
T Consensus 636 yidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 636 YIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999998888776655553
No 100
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.41 E-value=6.2e-12 Score=94.55 Aligned_cols=140 Identities=22% Similarity=0.272 Sum_probs=114.7
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
..+..+..+|..+...+++.+|+..|++++++.-.. ....++..+.++.++|..|
T Consensus 239 ~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~-------------------------~G~~h~~va~~l~nLa~ly 293 (508)
T KOG1840|consen 239 VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV-------------------------FGEDHPAVAATLNNLAVLY 293 (508)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh-------------------------cCCCCHHHHHHHHHHHHHH
Confidence 344556679999999999999999999999875431 2233344568999999999
Q ss_pred hhhccHHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCChHHHHHH
Q 044796 84 LKLGKFEESIKECTKALELN--------PTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD--------PSNNQAKRTI 147 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l 147 (186)
...|+|++|..++++|+++. |.-+..+..++.++...+++++|..++.+++++- |.-+.++.++
T Consensus 294 ~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl 373 (508)
T KOG1840|consen 294 YKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANL 373 (508)
T ss_pred hccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 99999999999999999873 3345678889999999999999999999998863 2335667777
Q ss_pred HHHHHHHHHHhhccccccchhhhhcc
Q 044796 148 LRKLKEMGNSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 148 ~~~~~~~~~~~~~~~~~A~~~~~~~~ 173 (186)
|.++.. +|+|++|.+.|+.++
T Consensus 374 ~~l~~~-----~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 374 AELYLK-----MGKYKEAEELYKKAI 394 (508)
T ss_pred HHHHHH-----hcchhHHHHHHHHHH
Confidence 777777 999999999999885
No 101
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=5e-12 Score=88.17 Aligned_cols=102 Identities=14% Similarity=0.089 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHH
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY-----MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRT 146 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 146 (186)
...+...+..+|....+|++||...++..++.+.. ...+..++..+....+.+.|...+.++++.+|++..+-..
T Consensus 140 a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~ 219 (389)
T COG2956 140 AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASII 219 (389)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhh
Confidence 34677888889999999999999999999988765 5678899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhccccccchhhhhcccCCCC
Q 044796 147 ILRKLKEMGNSILGRFGMSTDNFKAVKDPNTG 178 (186)
Q Consensus 147 l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 178 (186)
+|++... .|+|+.|++.++.++..+++
T Consensus 220 lG~v~~~-----~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 220 LGRVELA-----KGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred hhHHHHh-----ccchHHHHHHHHHHHHhChH
Confidence 9999999 99999999999998765543
No 102
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.1e-11 Score=85.94 Aligned_cols=99 Identities=20% Similarity=0.216 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH---FEEAIADMKKILEFDPSNNQAKRTIL 148 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~l~ 148 (186)
++.-|..+|.+|+..|++..|...|.+++++.|++++.+..+|.++....+ ..++...|++++.++|++..+...|+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA 234 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA 234 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 338999999999999999999999999999999999999999999776553 56899999999999999999999999
Q ss_pred HHHHHHHHHhhccccccchhhhhcccC
Q 044796 149 RKLKEMGNSILGRFGMSTDNFKAVKDP 175 (186)
Q Consensus 149 ~~~~~~~~~~~~~~~~A~~~~~~~~~~ 175 (186)
..+.. .|+|.+|+..|++.++.
T Consensus 235 ~~afe-----~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 235 FAAFE-----QGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHH-----cccHHHHHHHHHHHHhc
Confidence 87777 99999999999988643
No 103
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.40 E-value=5.3e-12 Score=95.33 Aligned_cols=167 Identities=14% Similarity=0.073 Sum_probs=137.7
Q ss_pred HHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcC-chhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796 9 AKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQ-SASEKKEVAPAPEMAELRSICHSNRGICFLKLG 87 (186)
Q Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 87 (186)
|...+...+..|+...|...+.++++.+|...+.|.+-..+....+ .+.+...+..... ......+|+.-+.....++
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~-~sgTeRv~mKs~~~er~ld 665 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS-ISGTERVWMKSANLERYLD 665 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc-cCCcchhhHHHhHHHHHhh
Confidence 4445567788999999999999999999999999988776664433 3444443322211 1124488999999999999
Q ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccch
Q 044796 88 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTD 167 (186)
Q Consensus 88 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~ 167 (186)
+.++|+..++++++..|+.+..|..+|.++.++++.+.|...|...++..|+++..|..++.+-.. .|....|..
T Consensus 666 ~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk-----~~~~~rAR~ 740 (913)
T KOG0495|consen 666 NVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK-----DGQLVRARS 740 (913)
T ss_pred hHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH-----hcchhhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999987777 778888889
Q ss_pred hhhhc--ccCCCCccc
Q 044796 168 NFKAV--KDPNTGAYS 181 (186)
Q Consensus 168 ~~~~~--~~~~~~~~~ 181 (186)
.++++ .+|++..+.
T Consensus 741 ildrarlkNPk~~~lw 756 (913)
T KOG0495|consen 741 ILDRARLKNPKNALLW 756 (913)
T ss_pred HHHHHHhcCCCcchhH
Confidence 99877 477665543
No 104
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.40 E-value=2.1e-12 Score=101.19 Aligned_cols=164 Identities=16% Similarity=0.145 Sum_probs=134.7
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhh-CCCcchhH--HHHHHHHHHHH
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEV-APAPEMAE--LRSICHSNRGI 81 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~a~ 81 (186)
-+-.+-.+|..|..--+...|.+||.+|.+++|.+..++.+.+..+.+....+....+ ....+..+ .....|..+|.
T Consensus 491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 4566778899998888999999999999999999999999888777554443322221 11111111 13366777999
Q ss_pred HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcc
Q 044796 82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGR 161 (186)
Q Consensus 82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 161 (186)
.|...+++.+|+..|+.++..+|.+...|..+|.+|...|++..|++.|.++..++|.+.-..+..+..... .|+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd-----~Gk 645 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD-----NGK 645 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH-----hhh
Confidence 999999999999999999999999999999999999999999999999999999999999999988877777 888
Q ss_pred ccccchhhhhcc
Q 044796 162 FGMSTDNFKAVK 173 (186)
Q Consensus 162 ~~~A~~~~~~~~ 173 (186)
|.+|...+..++
T Consensus 646 Ykeald~l~~ii 657 (1238)
T KOG1127|consen 646 YKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHHH
Confidence 888888776653
No 105
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.39 E-value=2.5e-11 Score=74.57 Aligned_cols=99 Identities=21% Similarity=0.110 Sum_probs=88.2
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL 86 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 86 (186)
+.+++.|..+-..|+.++|+.+|++++....+. + ....+++.+|.++...
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~--------------------------~----~~~~a~i~lastlr~L 51 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSG--------------------------A----DRRRALIQLASTLRNL 51 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc--------------------------h----HHHHHHHHHHHHHHHc
Confidence 578999999999999999999999999976652 1 1337899999999999
Q ss_pred ccHHHHHHHHHHHHhcCcc---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796 87 GKFEESIKECTKALELNPT---YMKALIRRAEAHEKLEHFEEAIADMKKILE 135 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (186)
|++++|+..+++++...|+ +..+...++.++...|++++|+..+..++.
T Consensus 52 G~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 52 GRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred CCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999888 778888899999999999999999988875
No 106
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.38 E-value=3.3e-11 Score=85.00 Aligned_cols=179 Identities=13% Similarity=0.176 Sum_probs=131.1
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChh---hhhccchhh-------------hhcCchhHHHhhCCCcc
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPER---AESASAPEA-------------KEGQSASEKKEVAPAPE 67 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 67 (186)
+-..+..++|.+++++|.+++|..-|+..|+.+|++.. +...++.+. ..++...+...+.....
T Consensus 104 DF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE 183 (504)
T KOG0624|consen 104 DFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE 183 (504)
T ss_pred cHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh
Confidence 34556778899999999999999999999999986543 333232211 12344445555555555
Q ss_pred hhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796 68 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI 147 (186)
Q Consensus 68 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 147 (186)
..+.++..+..++.||...|+...||..++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|+...++-..
T Consensus 184 i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~Y 263 (504)
T KOG0624|consen 184 IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFY 263 (504)
T ss_pred cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHH
Confidence 55667789999999999999999999999999999999999999999999999999999999999999999977654333
Q ss_pred HH---HHHHHHH---H-hhccccccchhhhhcccCCCCcccc
Q 044796 148 LR---KLKEMGN---S-ILGRFGMSTDNFKAVKDPNTGAYSI 182 (186)
Q Consensus 148 ~~---~~~~~~~---~-~~~~~~~A~~~~~~~~~~~~~~~~~ 182 (186)
-. +...+-. . -.+++.++++..++.+..+|....+
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i 305 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI 305 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce
Confidence 22 2211111 1 2667888888888876544443333
No 107
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=99.38 E-value=5e-11 Score=74.51 Aligned_cols=109 Identities=22% Similarity=0.285 Sum_probs=96.8
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
.+..++..|...++.|+|.+|++.|+.+....|..+ - ...+...+|.+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~--------------------------y----a~qAqL~l~yayy 58 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE--------------------------Y----AEQAQLDLAYAYY 58 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc--------------------------c----cHHHHHHHHHHHH
Confidence 367899999999999999999999999999999822 1 2388899999999
Q ss_pred hhccHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHhcC---------------HHHHHHHHHHHHhcCCCChHH
Q 044796 85 KLGKFEESIKECTKALELNPTYM---KALIRRAEAHEKLEH---------------FEEAIADMKKILEFDPSNNQA 143 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~ 143 (186)
+.+++++|+..+++-++++|+++ .+++..|.+++.+.. ..+|+..|++.++..|++.-+
T Consensus 59 ~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 59 KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 99999999999999999999885 589999999999887 889999999999999987654
No 108
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.38 E-value=4.9e-11 Score=80.81 Aligned_cols=139 Identities=19% Similarity=0.244 Sum_probs=104.1
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
.++.++..|...+..|+|.+|+..|++++...|. .+. .+.+.+.+|.++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~--------------------------s~~----a~~A~l~la~a~y 53 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN--------------------------SPY----APQAQLMLAYAYY 53 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT--------------------------STT----HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--------------------------ChH----HHHHHHHHHHHHH
Confidence 5788999999999999999999999999999998 332 2388999999999
Q ss_pred hhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHhcCCCChHH---HHHH
Q 044796 85 KLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLE-----------HFEEAIADMKKILEFDPSNNQA---KRTI 147 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~---~~~l 147 (186)
..|++++|+..+++.++..|++ +.+++.+|.+++.+. ...+|+..|+..+...|+++-+ ...+
T Consensus 54 ~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l 133 (203)
T PF13525_consen 54 KQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRL 133 (203)
T ss_dssp HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHH
Confidence 9999999999999999999876 568999999977654 3458999999999999998533 3333
Q ss_pred HHHHHHHH-------HH--hhccccccchhhhhcc
Q 044796 148 LRKLKEMG-------NS--ILGRFGMSTDNFKAVK 173 (186)
Q Consensus 148 ~~~~~~~~-------~~--~~~~~~~A~~~~~~~~ 173 (186)
..+-..++ .. ..|.+..|+..++.++
T Consensus 134 ~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~ 168 (203)
T PF13525_consen 134 AELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVI 168 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33333322 22 2667777887777765
No 109
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.38 E-value=3.1e-12 Score=71.33 Aligned_cols=66 Identities=29% Similarity=0.422 Sum_probs=61.2
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR 149 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 149 (186)
+..|++++|+..|++++..+|+++.+++.+|.++...|++++|...+++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 568999999999999999999999999999999999999999999999999999999888777664
No 110
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.38 E-value=5.7e-12 Score=71.27 Aligned_cols=69 Identities=28% Similarity=0.479 Sum_probs=64.6
Q ss_pred HHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796 80 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL 148 (186)
Q Consensus 80 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 148 (186)
..++...++|++|+.++++++..+|+++.++..+|.++..+|++++|+..|+++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 568899999999999999999999999999999999999999999999999999999999988766544
No 111
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.38 E-value=5.6e-11 Score=81.56 Aligned_cols=110 Identities=16% Similarity=0.234 Sum_probs=99.7
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL 86 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 86 (186)
+..++.|..++..|+|..|...|..-++..|.. + ..+.+++++|.+++.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s--------------------------~----~~~nA~yWLGe~~y~q 191 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNS--------------------------T----YTPNAYYWLGESLYAQ 191 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--------------------------c----ccchhHHHHHHHHHhc
Confidence 448899999999999999999999999999992 2 2348999999999999
Q ss_pred ccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHH
Q 044796 87 GKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRT 146 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 146 (186)
|+|+.|...|..+++-.|++ |++++.+|.+...+|+.++|...|+++++.-|+...+...
T Consensus 192 g~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 192 GDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred ccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999999999999987765 7899999999999999999999999999999998877554
No 112
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2e-11 Score=87.92 Aligned_cols=166 Identities=17% Similarity=0.097 Sum_probs=107.1
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
+..|+--|...+..+++..|+.+-+++|+.+|.+..++..-|... ..+..+.+.-++.......|.+-++|..+-.+|.
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL 379 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL 379 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence 344555555566666666666666666666666666666555444 2233333333332222222223333333333333
Q ss_pred hhcc------------------------------------HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHH
Q 044796 85 KLGK------------------------------------FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 128 (186)
Q Consensus 85 ~~~~------------------------------------~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 128 (186)
..|+ -++|...++++++++|....+...++.++...|.+++++.
T Consensus 380 A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~ 459 (564)
T KOG1174|consen 380 AQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIK 459 (564)
T ss_pred hhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHH
Confidence 3222 2567777778888888888888889999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796 129 DMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT 177 (186)
Q Consensus 129 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 177 (186)
.+++++...|++. .+..+|+++.. ...+.+|.++|..++..+|
T Consensus 460 LLe~~L~~~~D~~-LH~~Lgd~~~A-----~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 460 LLEKHLIIFPDVN-LHNHLGDIMRA-----QNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHHHhhccccH-HHHHHHHHHHH-----hhhHHHHHHHHHHHHhcCc
Confidence 9999998888755 67788888888 8888999999988864433
No 113
>PRK11906 transcriptional regulator; Provisional
Probab=99.35 E-value=2.3e-11 Score=89.20 Aligned_cols=155 Identities=13% Similarity=-0.005 Sum_probs=100.0
Q ss_pred HHHHhHhHHHHcc---cHHHHHHHHHHHH---hccCCChhhhhccchhhhhc------C-c-------hhHHHhhCCCcc
Q 044796 8 EAKLEGNKLFAEG---KYEEALLQYEVAL---RVASVPERAESASAPEAKEG------Q-S-------ASEKKEVAPAPE 67 (186)
Q Consensus 8 ~~~~~g~~~~~~~---~~~~A~~~~~~al---~~~p~~~~~~~~~~~~~~~~------~-~-------~~~~~~~~~~~~ 67 (186)
.++..|...+..+ ..+.|+.+|.+++ .++|....++..++.+.... + . ..+..+++..+.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4466776665544 4678899999999 99999888887777554221 0 1 222233444443
Q ss_pred hhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796 68 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI 147 (186)
Q Consensus 68 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 147 (186)
++.+...+|.+....++++.|+..|++|+.++|+.+.+|+..|.+....|+.++|...++++++++|.-..+-...
T Consensus 337 ----Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~ 412 (458)
T PRK11906 337 ----DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIK 412 (458)
T ss_pred ----CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHH
Confidence 3477777777777777777777777777777777777777777777777777777777777777777644332211
Q ss_pred HHHHHHHH-HHhhccccccchhhhh
Q 044796 148 LRKLKEMG-NSILGRFGMSTDNFKA 171 (186)
Q Consensus 148 ~~~~~~~~-~~~~~~~~~A~~~~~~ 171 (186)
- +- .......+.|+..|-+
T Consensus 413 ~-----~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 413 E-----CVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred H-----HHHHHcCCchhhhHHHHhh
Confidence 1 11 1124556666666543
No 114
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.34 E-value=1.6e-10 Score=80.25 Aligned_cols=139 Identities=14% Similarity=0.165 Sum_probs=108.2
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
.++.++..|...+..|+|++|+..|++++...|..+ ....+...+|.++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~------------------------------~a~~a~l~la~ayy 80 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP------------------------------YSQQVQLDLIYAYY 80 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------------------------------HHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999832 12367789999999
Q ss_pred hhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhc---------------C---HHHHHHHHHHHHhcCCCCh--
Q 044796 85 KLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLE---------------H---FEEAIADMKKILEFDPSNN-- 141 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~-- 141 (186)
+.+++++|+..+++.++.+|++ +.+++.+|.+...++ | ..+|+..|++.++..|++.
T Consensus 81 ~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya 160 (243)
T PRK10866 81 KNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT 160 (243)
T ss_pred hcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH
Confidence 9999999999999999998877 568999999875554 1 2578899999999999874
Q ss_pred -HHHHHHHHHHHHHHH-------H--hhccccccchhhhhcc
Q 044796 142 -QAKRTILRKLKEMGN-------S--ILGRFGMSTDNFKAVK 173 (186)
Q Consensus 142 -~~~~~l~~~~~~~~~-------~--~~~~~~~A~~~~~~~~ 173 (186)
++...+..+...++. . ..|.+..|+.-++.++
T Consensus 161 ~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~ 202 (243)
T PRK10866 161 TDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQML 202 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 344444333333322 1 2667777777777665
No 115
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.34 E-value=4.4e-12 Score=96.49 Aligned_cols=129 Identities=16% Similarity=0.184 Sum_probs=113.2
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL 86 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 86 (186)
.+....|...+..++|+++.++++.+++++|- ....|+.+|.+..+.
T Consensus 486 rA~r~~~~~~~~~~~fs~~~~hle~sl~~npl---------------------------------q~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 486 RAQRSLALLILSNKDFSEADKHLERSLEINPL---------------------------------QLGTWFGLGCAALQL 532 (777)
T ss_pred HHHHhhccccccchhHHHHHHHHHHHhhcCcc---------------------------------chhHHHhccHHHHHH
Confidence 34444555556667777777777777777777 348999999999999
Q ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccc
Q 044796 87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMST 166 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~ 166 (186)
++++.|..+|.+++..+|++..+|.+++.++...|+..+|...+.++++.+-.++.+|.+.-.+... .|.+++|+
T Consensus 533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd-----vge~eda~ 607 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD-----VGEFEDAI 607 (777)
T ss_pred hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh-----cccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999988888 89999999
Q ss_pred hhhhhcc
Q 044796 167 DNFKAVK 173 (186)
Q Consensus 167 ~~~~~~~ 173 (186)
+.+.+.+
T Consensus 608 ~A~~rll 614 (777)
T KOG1128|consen 608 KAYHRLL 614 (777)
T ss_pred HHHHHHH
Confidence 9998774
No 116
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=99.34 E-value=2e-10 Score=70.20 Aligned_cols=122 Identities=23% Similarity=0.258 Sum_probs=100.4
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
+.+..+-..|..+...|+.+.|++.|.++|.+.|. ++.+|.++++.+
T Consensus 41 e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~---------------------------------raSayNNRAQa~ 87 (175)
T KOG4555|consen 41 KASRELELKAIALAEAGDLDGALELFGQALCLAPE---------------------------------RASAYNNRAQAL 87 (175)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhccc---------------------------------chHhhccHHHHH
Confidence 45566777888899999999999999999999999 448999999999
Q ss_pred hhhccHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Q 044796 84 LKLGKFEESIKECTKALELNPTY----MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSI 158 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~ 158 (186)
.-+|+.++|+..+++++++..+. ..++...|.+|..+|+-+.|...|+.+-++......-..-.-.-|..+++.+
T Consensus 88 RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~M 166 (175)
T KOG4555|consen 88 RLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQM 166 (175)
T ss_pred HHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHH
Confidence 99999999999999999985433 4678999999999999999999999999887654433333333445556554
No 117
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.33 E-value=2.4e-11 Score=93.01 Aligned_cols=105 Identities=26% Similarity=0.218 Sum_probs=96.0
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
.+..++..|.++...|.+.+|...|..++.++|+++ .....+|.++.
T Consensus 683 ~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv---------------------------------~s~~Ala~~ll 729 (799)
T KOG4162|consen 683 SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV---------------------------------PSMTALAELLL 729 (799)
T ss_pred hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc---------------------------------HHHHHHHHHHH
Confidence 456789999999999999999999999999999933 67778899999
Q ss_pred hhccHHHHHH--HHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH
Q 044796 85 KLGKFEESIK--ECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ 142 (186)
Q Consensus 85 ~~~~~~~A~~--~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 142 (186)
..|+-.-|.. ....+++++|.++++|+.+|.++..+|+.++|.++|..++++++.+|-
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9998777766 999999999999999999999999999999999999999999998874
No 118
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.33 E-value=3.3e-11 Score=90.04 Aligned_cols=132 Identities=12% Similarity=-0.114 Sum_probs=105.0
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
.+..+...|..+...|++++|...++++++..|++... ...........
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~-------------------------------~~~~l~~~~~l 310 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI-------------------------------SLPLCLPIPRL 310 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc-------------------------------hhHHHHHhhhc
Confidence 45677778888888888888888888888888883211 00122333334
Q ss_pred hhccHHHHHHHHHHHHhcCcccH--HHHHHHHHHHHHhcCHHHHHHHHH--HHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 044796 85 KLGKFEESIKECTKALELNPTYM--KALIRRAEAHEKLEHFEEAIADMK--KILEFDPSNNQAKRTILRKLKEMGNSILG 160 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 160 (186)
..++.+.++..++++++.+|+++ ..+..+|.++++.|++++|.++|+ .+++.+|+... ...++.++.. .|
T Consensus 311 ~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~-----~g 384 (409)
T TIGR00540 311 KPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQ-----AG 384 (409)
T ss_pred CCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHH-----cC
Confidence 45778889999999999999999 888899999999999999999999 67888887655 5589999999 89
Q ss_pred cccccchhhhhcc
Q 044796 161 RFGMSTDNFKAVK 173 (186)
Q Consensus 161 ~~~~A~~~~~~~~ 173 (186)
+.++|.++|++++
T Consensus 385 ~~~~A~~~~~~~l 397 (409)
T TIGR00540 385 DKAEAAAMRQDSL 397 (409)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998874
No 119
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.32 E-value=7.6e-11 Score=87.81 Aligned_cols=156 Identities=10% Similarity=-0.009 Sum_probs=90.6
Q ss_pred HhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCc----------------------------------
Q 044796 11 LEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQS---------------------------------- 55 (186)
Q Consensus 11 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~---------------------------------- 55 (186)
..+..+...|++++|...+++..+.+|+++.+...++..+ ..++.
T Consensus 158 ~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 158 TRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 3477888888888888888888888888887766655333 11111
Q ss_pred --------hhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc-------------------------
Q 044796 56 --------ASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALEL------------------------- 102 (186)
Q Consensus 56 --------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------------------------- 102 (186)
+.....+...|...+.++.+...+|..+...|+.++|...++++++.
T Consensus 238 ~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 238 QAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHH
Confidence 11111222333334445566667777777777777777777776663
Q ss_pred ------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796 103 ------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 103 ------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
+|+++..+..+|.++...|++++|.++|+++++..|++.. +..++.++.. .|+.++|..+|++.
T Consensus 318 e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~-----~g~~~~A~~~~~~~ 387 (398)
T PRK10747 318 RQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDR-----LHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHH-----cCCHHHHHHHHHHH
Confidence 3444444555555555555555555555555555555332 3345555555 55555555555544
No 120
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.31 E-value=1.3e-10 Score=86.91 Aligned_cols=141 Identities=18% Similarity=0.151 Sum_probs=93.7
Q ss_pred hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHH-HHHHHHH
Q 044796 2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELR-SICHSNR 79 (186)
Q Consensus 2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 79 (186)
+.+++......|...+..|+|+.|.+.+.++.+..|+....+...+... ..++.+.+...+.......|.. ..+....
T Consensus 80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~ 159 (409)
T TIGR00540 80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR 159 (409)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH
Confidence 3456778888999999999999999999999999888555544444443 3344444444333221111111 1233344
Q ss_pred HHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH
Q 044796 80 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ 142 (186)
Q Consensus 80 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 142 (186)
+.++...|++++|...+++.++..|+++.++..++.++...|++++|...+.+..+..+.++.
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~ 222 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDE 222 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 677777777777777777777777777777777777777777777777777777766544443
No 121
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.31 E-value=1.3e-10 Score=85.37 Aligned_cols=115 Identities=21% Similarity=0.181 Sum_probs=102.8
Q ss_pred HHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHH
Q 044796 17 FAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKEC 96 (186)
Q Consensus 17 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 96 (186)
...++++.|+..+++..+.+|+ ....++.++...++..+|++.+
T Consensus 180 ~~t~~~~~ai~lle~L~~~~pe------------------------------------v~~~LA~v~l~~~~E~~AI~ll 223 (395)
T PF09295_consen 180 SLTQRYDEAIELLEKLRERDPE------------------------------------VAVLLARVYLLMNEEVEAIRLL 223 (395)
T ss_pred hhcccHHHHHHHHHHHHhcCCc------------------------------------HHHHHHHHHHhcCcHHHHHHHH
Confidence 3467899999999998888877 3345788888889999999999
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796 97 TKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 97 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
++++..+|.+...+...+..+...++++.|+...++++.+.|++...|..|+.+|.. .|+++.|+-.+..+
T Consensus 224 ~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~-----~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 224 NEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQ-----LGDFENALLALNSC 294 (395)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh-----cCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999 99999988777655
No 122
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.31 E-value=2.1e-10 Score=87.12 Aligned_cols=166 Identities=15% Similarity=0.124 Sum_probs=129.1
Q ss_pred hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh----hhc-------------------------
Q 044796 3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA----KEG------------------------- 53 (186)
Q Consensus 3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~----~~~------------------------- 53 (186)
++....+-.+|.++...|++++|...|...|+.+|++...+..+..+. ...
T Consensus 35 ~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~ 114 (517)
T PF12569_consen 35 LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPR 114 (517)
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchh
Confidence 455667778999999999999999999999999999986655443222 000
Q ss_pred ---------------------------Cc-----------------------hhHHHhhCCC----------cchhHHHH
Q 044796 54 ---------------------------QS-----------------------ASEKKEVAPA----------PEMAELRS 73 (186)
Q Consensus 54 ---------------------------~~-----------------------~~~~~~~~~~----------~~~~~~~~ 73 (186)
.. ......+... ........
T Consensus 115 rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~l 194 (517)
T PF12569_consen 115 RLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLL 194 (517)
T ss_pred HhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHH
Confidence 00 0001111110 01111124
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
++++.+|+.|...|++++|+.++++++...|+.++.+...|.++.+.|++.+|...++.+..+|+.|--+....+..+.+
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR 274 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR 274 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence 67788999999999999999999999999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHhhccccccchhhhhcc
Q 044796 154 MGNSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 154 ~~~~~~~~~~~A~~~~~~~~ 173 (186)
.|++++|.+.+..-.
T Consensus 275 -----a~~~e~A~~~~~~Ft 289 (517)
T PF12569_consen 275 -----AGRIEEAEKTASLFT 289 (517)
T ss_pred -----CCCHHHHHHHHHhhc
Confidence 888888888876553
No 123
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.29 E-value=5.1e-11 Score=94.64 Aligned_cols=133 Identities=17% Similarity=0.028 Sum_probs=78.5
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCc-hhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQS-ASEKKEVAPAPEMAELRSICHSNRGIC 82 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~ 82 (186)
...+++..+...+...+++++|+...+.+++.+|+....++.+|.+....+. .++ ....++..
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~----------------~lv~~l~~ 92 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDS----------------NLLNLIDS 92 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhh----------------hhhhhhhh
Confidence 3467888999999999999999999999999999999999999987633222 111 11123333
Q ss_pred HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
.....++ .++.++-..+...+.+..+++.+|.||.++|+.++|...|+++++++|+++.+..++|..+..
T Consensus 93 ~~~~~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 93 FSQNLKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE 162 (906)
T ss_pred cccccch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 3333333 333333333333444444444445555455555555555555555555444444444444444
No 124
>PRK15331 chaperone protein SicA; Provisional
Probab=99.29 E-value=3.2e-11 Score=77.01 Aligned_cols=97 Identities=8% Similarity=-0.043 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 044796 73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLK 152 (186)
Q Consensus 73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 152 (186)
-...+..|.-++..|++++|...|.-....+|.++..|..+|.|+..+++|++|+..|..+..+++++|...+..|.|+.
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l 116 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence 36778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccchhhhhccc
Q 044796 153 EMGNSILGRFGMSTDNFKAVKD 174 (186)
Q Consensus 153 ~~~~~~~~~~~~A~~~~~~~~~ 174 (186)
. +|+...|+.+|+.+++
T Consensus 117 ~-----l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 L-----MRKAAKARQCFELVNE 133 (165)
T ss_pred H-----hCCHHHHHHHHHHHHh
Confidence 9 8899999999988764
No 125
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=2.7e-10 Score=79.20 Aligned_cols=108 Identities=24% Similarity=0.260 Sum_probs=91.9
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
..++-|..+|.+++..|++..|...|.+++++.|+++ ..+..+|.++
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~---------------------------------~~~~g~aeaL 200 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP---------------------------------EILLGLAEAL 200 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH---------------------------------HHHHHHHHHH
Confidence 4567899999999999999999999999999999944 5555555555
Q ss_pred hhhc---cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHH
Q 044796 84 LKLG---KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAK 144 (186)
Q Consensus 84 ~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 144 (186)
.... ...++...+++++..+|+++.+.+.+|..++..|+|.+|...|+..++..|.+..-.
T Consensus 201 ~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr 264 (287)
T COG4235 201 YYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRR 264 (287)
T ss_pred HHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence 4332 457999999999999999999999999999999999999999999999999876543
No 126
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.27 E-value=2.3e-10 Score=73.49 Aligned_cols=98 Identities=22% Similarity=0.253 Sum_probs=84.3
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK 85 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (186)
..+.+.+|..++..|++++|+..|+.++...|+. ...+.+...+|.++..
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~------------------------------~l~~~a~l~LA~~~~~ 97 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALANAPDP------------------------------ELKPLARLRLARILLQ 97 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCH------------------------------HHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999987661 1234678889999999
Q ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 044796 86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKIL 134 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (186)
.|++++|+..++. +...+..+.++..+|.++...|++++|...|++++
T Consensus 98 ~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 98 QGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred cCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999976 44455667889999999999999999999999875
No 127
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.27 E-value=6.2e-11 Score=82.90 Aligned_cols=97 Identities=10% Similarity=0.080 Sum_probs=86.1
Q ss_pred HHHHHHHHHHH-hhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---ChHHHH
Q 044796 73 SICHSNRGICF-LKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPS---NNQAKR 145 (186)
Q Consensus 73 ~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~ 145 (186)
...++..|..+ +..|+|++|+..|+..++..|+. +.+++++|.+++..|++++|+..|.+++...|+ .++++.
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 36777787776 56799999999999999999988 689999999999999999999999999998887 467788
Q ss_pred HHHHHHHHHHHHhhccccccchhhhhccc
Q 044796 146 TILRKLKEMGNSILGRFGMSTDNFKAVKD 174 (186)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~A~~~~~~~~~ 174 (186)
.+|.++.. +|+++.|+..|+.++.
T Consensus 222 klg~~~~~-----~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 222 KVGVIMQD-----KGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHH-----cCCHHHHHHHHHHHHH
Confidence 88888887 8999999999998863
No 128
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.25 E-value=2.4e-10 Score=86.19 Aligned_cols=140 Identities=20% Similarity=0.165 Sum_probs=111.7
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
..+..+.++|..|...|+|++|..++++|+++.... ....++..+..+.+++.++
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~-------------------------~~~~~~~v~~~l~~~~~~~ 335 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKL-------------------------LGASHPEVAAQLSELAAIL 335 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHh-------------------------hccChHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999886551 1122333457888999999
Q ss_pred hhhccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCChHHHHHH
Q 044796 84 LKLGKFEESIKECTKALEL--------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD--------PSNNQAKRTI 147 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l 147 (186)
..++++++|+.++++++++ +|.-+..+.++|.+++.+|++++|.+.|++++++. +........+
T Consensus 336 ~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 336 QSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 9999999999999999986 23446789999999999999999999999999875 2334456666
Q ss_pred HHHHHHHHHHhhccccccchhhhhcc
Q 044796 148 LRKLKEMGNSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 148 ~~~~~~~~~~~~~~~~~A~~~~~~~~ 173 (186)
+..+.+ .+.+.+|...|..++
T Consensus 416 a~~~~~-----~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 416 AEAYEE-----LKKYEEAEQLFEEAK 436 (508)
T ss_pred HHHHHH-----hcccchHHHHHHHHH
Confidence 666666 778888888887663
No 129
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.24 E-value=7.4e-10 Score=82.55 Aligned_cols=133 Identities=15% Similarity=0.083 Sum_probs=82.2
Q ss_pred hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHH
Q 044796 2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGI 81 (186)
Q Consensus 2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 81 (186)
+.+++...+..|...+..|+|++|.+...++-+..+. +. -.+...+.
T Consensus 80 r~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~--------------------------------l~~llaA~ 126 (398)
T PRK10747 80 KRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PV--------------------------------VNYLLAAE 126 (398)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hH--------------------------------HHHHHHHH
Confidence 3457788889999999999999999777765554222 22 22222344
Q ss_pred HHhhhccHHHHHHHHHHHHhcCcccHHH-HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhc
Q 044796 82 CFLKLGKFEESIKECTKALELNPTYMKA-LIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILG 160 (186)
Q Consensus 82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~ 160 (186)
.....|+++.|..++.++.+.+|++..+ ....+.++...|++++|+..+++..+.+|+++.+...++.++.. .|
T Consensus 127 aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~-----~g 201 (398)
T PRK10747 127 AAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR-----TG 201 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-----HH
Confidence 4466666666666666666666655322 22335666666666666666666666666666666666666665 55
Q ss_pred cccccchhhhhc
Q 044796 161 RFGMSTDNFKAV 172 (186)
Q Consensus 161 ~~~~A~~~~~~~ 172 (186)
++++|++.+...
T Consensus 202 dw~~a~~~l~~l 213 (398)
T PRK10747 202 AWSSLLDILPSM 213 (398)
T ss_pred hHHHHHHHHHHH
Confidence 555555544433
No 130
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.24 E-value=1.2e-10 Score=85.52 Aligned_cols=166 Identities=16% Similarity=0.107 Sum_probs=118.9
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhh---hhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERA---ESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNR 79 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (186)
+.+..+..+|..+...|+++.+...+.++....|.+.+. ....+... ..++.+.+...+.......|.+..++..
T Consensus 4 ~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~- 82 (355)
T cd05804 4 DFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL- 82 (355)
T ss_pred ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-
Confidence 456788999999999999999999999999988876543 33333333 3344444443332222222223344443
Q ss_pred HHHHhhhc----cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 044796 80 GICFLKLG----KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG 155 (186)
Q Consensus 80 a~~~~~~~----~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 155 (186)
+..+...| ....+...+......+|....++..+|.++...|++++|+..++++++++|+++.++..++.++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-- 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-- 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH--
Confidence 44444444 344444444444456777778888899999999999999999999999999999999999999999
Q ss_pred HHhhccccccchhhhhcccC
Q 044796 156 NSILGRFGMSTDNFKAVKDP 175 (186)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~~~ 175 (186)
.|++++|+..+++++..
T Consensus 161 ---~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 161 ---QGRFKEGIAFMESWRDT 177 (355)
T ss_pred ---cCCHHHHHHHHHhhhhc
Confidence 99999999999988643
No 131
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.23 E-value=6.9e-11 Score=65.80 Aligned_cols=68 Identities=24% Similarity=0.324 Sum_probs=60.5
Q ss_pred HHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHH
Q 044796 16 LFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKE 95 (186)
Q Consensus 16 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 95 (186)
++..|++++|+..|++++..+|++ ..++..+|.++...|++++|...
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~---------------------------------~~~~~~la~~~~~~g~~~~A~~~ 47 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDN---------------------------------PEARLLLAQCYLKQGQYDEAEEL 47 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTS---------------------------------HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCC---------------------------------HHHHHHHHHHHHHcCCHHHHHHH
Confidence 367899999999999999999993 38889999999999999999999
Q ss_pred HHHHHhcCcccHHHHHHHHHH
Q 044796 96 CTKALELNPTYMKALIRRAEA 116 (186)
Q Consensus 96 ~~~al~~~p~~~~~~~~lg~~ 116 (186)
+++++..+|+++.++..++.+
T Consensus 48 l~~~~~~~~~~~~~~~l~a~i 68 (68)
T PF14559_consen 48 LERLLKQDPDNPEYQQLLAQI 68 (68)
T ss_dssp HHCCHGGGTTHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHhcC
Confidence 999999999998888777653
No 132
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.22 E-value=7.2e-11 Score=91.78 Aligned_cols=107 Identities=12% Similarity=0.157 Sum_probs=87.2
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
......|+..+..|++++|...+.++++.+|.++.+|+.+|.+|..+|+.++++..+-.|-.++|.+.+.|..++.....
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~ 219 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ 219 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence 45556677777788888888888888888888888888888888888888888888888888888888888888887777
Q ss_pred HHHHhhccccccchhhhhcccCCCCccccccc
Q 044796 154 MGNSILGRFGMSTDNFKAVKDPNTGAYSISFQ 185 (186)
Q Consensus 154 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 185 (186)
+|.+++|+-+|.+++..+|..+.+.++
T Consensus 220 -----~~~i~qA~~cy~rAI~~~p~n~~~~~e 246 (895)
T KOG2076|consen 220 -----LGNINQARYCYSRAIQANPSNWELIYE 246 (895)
T ss_pred -----cccHHHHHHHHHHHHhcCCcchHHHHH
Confidence 788888888888887777666665543
No 133
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=9.6e-11 Score=78.61 Aligned_cols=100 Identities=27% Similarity=0.465 Sum_probs=93.5
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
..+..+...|+.++...+|..|+.+|.++|.++|. .+..|.+.+.|+
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~---------------------------------~~~Y~tnralch 54 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPT---------------------------------VASYYTNRALCH 54 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhcCCC---------------------------------cchhhhhHHHHH
Confidence 35678889999999999999999999999999999 237889999999
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF 136 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (186)
+++++|+.+...+.++++++|+...+++.+|.++.....|++|+..+.++..+
T Consensus 55 lk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 55 LKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSL 107 (284)
T ss_pred HHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999665
No 134
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.22 E-value=9e-11 Score=72.14 Aligned_cols=95 Identities=24% Similarity=0.214 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---ChHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPS---NNQAKRTI 147 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l 147 (186)
.+.+.+|.++...|+.++|+..|++++...... ..++..+|.++..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 578899999999999999999999999975443 678999999999999999999999999999898 77888888
Q ss_pred HHHHHHHHHHhhccccccchhhhhcc
Q 044796 148 LRKLKEMGNSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 148 ~~~~~~~~~~~~~~~~~A~~~~~~~~ 173 (186)
+.++.. .|+.++|+..+-.++
T Consensus 82 Al~L~~-----~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 82 ALALYN-----LGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHH-----CCCHHHHHHHHHHHH
Confidence 877777 899999998876554
No 135
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.7e-10 Score=79.91 Aligned_cols=110 Identities=32% Similarity=0.512 Sum_probs=98.5
Q ss_pred hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796 3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC 82 (186)
Q Consensus 3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 82 (186)
-+.|+.+..-|+.+++.++|..|+.+|.++|+..-.+++ .++.+|.++|.+
T Consensus 78 ~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d-----------------------------lnavLY~NRAAa 128 (390)
T KOG0551|consen 78 HEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD-----------------------------LNAVLYTNRAAA 128 (390)
T ss_pred HHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc-----------------------------HHHHHHhhHHHH
Confidence 357899999999999999999999999999998766432 255889999999
Q ss_pred HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 044796 83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN 141 (186)
Q Consensus 83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 141 (186)
....|+|..|+..+.+++.++|++..++++-|.|++.+.++.+|+.+.+..+.++.+..
T Consensus 129 ~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 129 QLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999999999999888887765443
No 136
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=8.6e-10 Score=74.52 Aligned_cols=119 Identities=31% Similarity=0.448 Sum_probs=99.6
Q ss_pred hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhc--------cCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHH
Q 044796 2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRV--------ASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRS 73 (186)
Q Consensus 2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (186)
+++....+.+.|+.++..|+|.+|...|..|+.. .|..++.. .......
T Consensus 174 Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~-----------------------eLdk~~t 230 (329)
T KOG0545|consen 174 KMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWL-----------------------ELDKMIT 230 (329)
T ss_pred hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHH-----------------------HHHHhhh
Confidence 4566778999999999999999999999998754 23322211 1111223
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA 143 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 143 (186)
..+.+.++|+...|+|-+++..+...+..+|++..+++..|.+....=+..+|...|.++++++|.-..+
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 6788999999999999999999999999999999999999999999999999999999999999986554
No 137
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.20 E-value=1.8e-10 Score=65.88 Aligned_cols=73 Identities=29% Similarity=0.409 Sum_probs=61.9
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
..+..+..+|.++...|++++|+.+|++++++... .+...+..+.++.++|.++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--------------------------~~~~~~~~a~~~~~lg~~~ 56 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQ--------------------------LGDDHPDTANTLNNLGECY 56 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--------------------------TTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------------------HCCCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999987433 2333444568999999999
Q ss_pred hhhccHHHHHHHHHHHHhc
Q 044796 84 LKLGKFEESIKECTKALEL 102 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~ 102 (186)
..+|++++|+.++++++++
T Consensus 57 ~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 57 YRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHTTHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999976
No 138
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.19 E-value=2.5e-10 Score=64.48 Aligned_cols=70 Identities=31% Similarity=0.445 Sum_probs=63.1
Q ss_pred HhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHH
Q 044796 13 GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEES 92 (186)
Q Consensus 13 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 92 (186)
...++..++|++|+.++++++.++|+ ++..+..+|.++..+|++++|
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~---------------------------------~~~~~~~~a~~~~~~g~~~~A 48 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPD---------------------------------DPELWLQRARCLFQLGRYEEA 48 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcc---------------------------------cchhhHHHHHHHHHhccHHHH
Confidence 56789999999999999999999999 338899999999999999999
Q ss_pred HHHHHHHHhcCcccHHHHHHHHH
Q 044796 93 IKECTKALELNPTYMKALIRRAE 115 (186)
Q Consensus 93 ~~~~~~al~~~p~~~~~~~~lg~ 115 (186)
+..++++++..|+++.+...++.
T Consensus 49 ~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 49 LEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHh
Confidence 99999999999999887665543
No 139
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.18 E-value=1.9e-10 Score=65.81 Aligned_cols=67 Identities=24% Similarity=0.378 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc----C---cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796 70 ELRSICHSNRGICFLKLGKFEESIKECTKALEL----N---PTYMKALIRRAEAHEKLEHFEEAIADMKKILEF 136 (186)
Q Consensus 70 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~---p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (186)
|..+.++.++|.++..+|++++|+.+|++++.+ . |....++.++|.++..+|++++|+.++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345689999999999999999999999999976 1 223668999999999999999999999999875
No 140
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.18 E-value=7.8e-10 Score=83.98 Aligned_cols=175 Identities=14% Similarity=-0.021 Sum_probs=141.3
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK 85 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (186)
..|..-+......++.++|+..++++++.+|+....|..+|.+. ..++.+.+..++..-....|.....|..++.+-.+
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 34555556667789999999999999999999999999999988 55666777777665555666666999999999999
Q ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH----------------
Q 044796 86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR---------------- 149 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~---------------- 149 (186)
.|+.-.|...++++.-.||++...|...-..-.+.|..+.|.....+|++-.|+++..|..-..
T Consensus 732 ~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALk 811 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALK 811 (913)
T ss_pred hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998887665543221
Q ss_pred -------HHHHHHHH--hhccccccchhhhhcc--cCCCCccc
Q 044796 150 -------KLKEMGNS--ILGRFGMSTDNFKAVK--DPNTGAYS 181 (186)
Q Consensus 150 -------~~~~~~~~--~~~~~~~A~~~~~~~~--~~~~~~~~ 181 (186)
++...+.. ...+++.|.+.|.+++ +|+.+...
T Consensus 812 kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~w 854 (913)
T KOG0495|consen 812 KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAW 854 (913)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHH
Confidence 33333333 2788999999999885 66665544
No 141
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.16 E-value=2e-10 Score=84.26 Aligned_cols=70 Identities=21% Similarity=0.228 Sum_probs=64.9
Q ss_pred hhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796 68 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKA---LIRRAEAHEKLEHFEEAIADMKKILEFD 137 (186)
Q Consensus 68 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (186)
..|..+..++++|.++..+|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++++.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 345567999999999999999999999999999999999865 9999999999999999999999999973
No 142
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.16 E-value=9.1e-11 Score=85.89 Aligned_cols=116 Identities=31% Similarity=0.492 Sum_probs=106.3
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
..++.+...|...+..+.|+.|+..|.++|+++|+. +..+.+++.++
T Consensus 2 ~~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnc---------------------------------a~~~anRa~a~ 48 (476)
T KOG0376|consen 2 SSAEELKNEANEALKDKVFDVAVDLYSKAIELDPNC---------------------------------AIYFANRALAH 48 (476)
T ss_pred chhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcc---------------------------------eeeechhhhhh
Confidence 357778889999999999999999999999999992 26777888999
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 044796 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLK 152 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 152 (186)
.+.++|..|+..+.++++.+|....+|++.|.+...++.+.+|+..|+....+.|+++.+...+..|-.
T Consensus 49 lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 49 LKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred eeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999887775443
No 143
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.15 E-value=3.9e-10 Score=74.93 Aligned_cols=107 Identities=21% Similarity=0.203 Sum_probs=100.3
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
++|..++++|..|=..|-+.-|.--|.+++.+.|+ . +.++..+|..+
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~--------------------------m-------~~vfNyLG~Yl 109 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPD--------------------------M-------PEVFNYLGIYL 109 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCC--------------------------c-------HHHHHHHHHHH
Confidence 56888999999999999999999999999999999 3 38889999999
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH
Q 044796 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA 143 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 143 (186)
...|+|+.|...|+..++++|.+..++.++|..++.-|++.-|.+.+.+-.+-+|++|--
T Consensus 110 ~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR 169 (297)
T COG4785 110 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFR 169 (297)
T ss_pred HhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHH
Confidence 999999999999999999999999999999999999999999999999999999998854
No 144
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.14 E-value=2.1e-09 Score=86.05 Aligned_cols=143 Identities=13% Similarity=0.024 Sum_probs=105.9
Q ss_pred HhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhcc--chhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796 11 LEGNKLFAEGKYEEALLQYEVALRVASVPERAESAS--APEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG 87 (186)
Q Consensus 11 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 87 (186)
.+..++...|+.++|+.++++++ +|.+......+ +..+ ..++...+...+.......|.++.++..++..+...+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~ 150 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAG 150 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC
Confidence 55566667788888888888888 44444444433 4455 3355555554444444444444578888899999999
Q ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 044796 88 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN 156 (186)
Q Consensus 88 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 156 (186)
+.++|+..+++++..+|.+... ..++.++...++..+|+..++++++.+|++.++...+..++...|.
T Consensus 151 q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~ 218 (822)
T PRK14574 151 RGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRI 218 (822)
T ss_pred CHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999986554 5567777677888789999999999999999999999988888443
No 145
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=4.6e-10 Score=80.77 Aligned_cols=102 Identities=25% Similarity=0.368 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc----c-----------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796 73 SICHSNRGICFLKLGKFEESIKECTKALELNP----T-----------YMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137 (186)
Q Consensus 73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p----~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (186)
+...-..|..+++.|+|..|...|++++..=+ . -..++.+++.|+.++++|.+|+....++|+++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 35567789999999999999999999887522 1 13478999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCCCc
Q 044796 138 PSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTGA 179 (186)
Q Consensus 138 p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 179 (186)
|+|..+++..|+++.. +++|+.|+..|++++...|.+
T Consensus 288 ~~N~KALyRrG~A~l~-----~~e~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLA-----LGEYDLARDDFQKALKLEPSN 324 (397)
T ss_pred CCchhHHHHHHHHHHh-----hccHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999 999999999999996444443
No 146
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.12 E-value=1.9e-09 Score=69.70 Aligned_cols=104 Identities=20% Similarity=0.185 Sum_probs=75.7
Q ss_pred cHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh---hhccHHHHHHHHH
Q 044796 21 KYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL---KLGKFEESIKECT 97 (186)
Q Consensus 21 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~~A~~~~~ 97 (186)
-|+.|.+.++.....+|.+.+.+..-| .++..++.... ...-+++|+.-|+
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG--------------------------~ALLELAqfk~g~es~~miedAisK~e 59 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWG--------------------------GALLELAQFKQGPESKKMIEDAISKFE 59 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHH--------------------------HHHHHHHHHS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHH--------------------------HHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 378899999999999999766554443 33333433321 2235789999999
Q ss_pred HHHhcCcccHHHHHHHHHHHHHhcC-----------HHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796 98 KALELNPTYMKALIRRAEAHEKLEH-----------FEEAIADMKKILEFDPSNNQAKRTILRK 150 (186)
Q Consensus 98 ~al~~~p~~~~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~~~l~~~ 150 (186)
+|+.++|+...+++.+|.++..++. |++|..+|++|...+|++...+..|..+
T Consensus 60 eAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 60 EALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999999999999999999988874 7889999999999999998777766643
No 147
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.09 E-value=6.5e-09 Score=79.18 Aligned_cols=164 Identities=18% Similarity=0.140 Sum_probs=119.5
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHh----hCCCcchhHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKE----VAPAPEMAELRSICHSN 78 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 78 (186)
++++.+.-...++...|++++|+.++.+....-++...+.-..|.++ ..+..+++... +..+|.+. ..+..
T Consensus 2 E~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~----~Yy~~ 77 (517)
T PF12569_consen 2 EHSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNY----DYYRG 77 (517)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH----HHHHH
Confidence 56788888999999999999999999999988888888888888776 55555555444 45566554 44444
Q ss_pred HHHHHhh-----hccHHHHHHHHHHHHhcCcc------------------------------------------------
Q 044796 79 RGICFLK-----LGKFEESIKECTKALELNPT------------------------------------------------ 105 (186)
Q Consensus 79 ~a~~~~~-----~~~~~~A~~~~~~al~~~p~------------------------------------------------ 105 (186)
+..+... ..+.+.-...|+......|.
T Consensus 78 L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~ 157 (517)
T PF12569_consen 78 LEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPE 157 (517)
T ss_pred HHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChh
Confidence 4433311 11222333333332222211
Q ss_pred ---------------------------------c--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796 106 ---------------------------------Y--MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK 150 (186)
Q Consensus 106 ---------------------------------~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 150 (186)
. ..+++.+|..+...|++++|+.+++++|+..|+.++.+...|++
T Consensus 158 K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Kari 237 (517)
T PF12569_consen 158 KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 0 13567889999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccccchhhhhcccCC
Q 044796 151 LKEMGNSILGRFGMSTDNFKAVKDPN 176 (186)
Q Consensus 151 ~~~~~~~~~~~~~~A~~~~~~~~~~~ 176 (186)
+.. .|++.+|.+..+.+...+
T Consensus 238 lKh-----~G~~~~Aa~~~~~Ar~LD 258 (517)
T PF12569_consen 238 LKH-----AGDLKEAAEAMDEARELD 258 (517)
T ss_pred HHH-----CCCHHHHHHHHHHHHhCC
Confidence 999 999999999998875443
No 148
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.07 E-value=1e-08 Score=75.46 Aligned_cols=114 Identities=22% Similarity=0.176 Sum_probs=100.8
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL 86 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 86 (186)
-.+-..+.+++..++..+|.+.+++++.++|. .+..+.++|.++++.
T Consensus 341 ~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~---------------------------------~~~l~~~~a~all~~ 387 (484)
T COG4783 341 YYLELAGDILLEANKAKEAIERLKKALALDPN---------------------------------SPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC---------------------------------ccHHHHHHHHHHHhc
Confidence 34556788999999999999999999999999 238899999999999
Q ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
|++.+|+..++..+..+|+++..|..+|.+|..+|+..+|...+.....+...-..+...+..+...
T Consensus 388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998888766666655544443
No 149
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.03 E-value=5.5e-10 Score=82.02 Aligned_cols=69 Identities=10% Similarity=0.044 Sum_probs=64.6
Q ss_pred cCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH---HHHHHHHHHHHHHHhhccccccchhhhhcccC
Q 044796 102 LNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA---KRTILRKLKEMGNSILGRFGMSTDNFKAVKDP 175 (186)
Q Consensus 102 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 175 (186)
.+|+++.+++++|.+++.+|+|++|+..|+++++++|++.++ |++++.++.. +|++++|+.++++++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-----LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-----REEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHh
Confidence 588999999999999999999999999999999999999865 9999999998 99999999999998764
No 150
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.02 E-value=5.5e-09 Score=79.15 Aligned_cols=90 Identities=12% Similarity=0.065 Sum_probs=64.5
Q ss_pred HHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHH----hhCCCcchhHHHHHHHHHHHHHH
Q 044796 9 AKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKK----EVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
|--+|..+...++|++|++||+.|+...|+|.+.+.-++.+. +.++.+.... .+...|... ..|...|..+
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~r----a~w~~~Avs~ 153 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQR----ASWIGFAVAQ 153 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhH----HHHHHHHHHH
Confidence 455777788888888889999888888888888888887765 4455544333 334444333 7788888888
Q ss_pred hhhccHHHHHHHHHHHHhc
Q 044796 84 LKLGKFEESIKECTKALEL 102 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~ 102 (186)
.-.|++..|....+...+.
T Consensus 154 ~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 154 HLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888888887776665544
No 151
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.02 E-value=8.2e-10 Score=71.35 Aligned_cols=96 Identities=25% Similarity=0.332 Sum_probs=75.6
Q ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 044796 88 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF----------EEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS 157 (186)
Q Consensus 88 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 157 (186)
-|+.|.+.++.....+|.+++.+++-|.++..+.++ ++|+.-|++|+.++|+...++..+|.++..+|-.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 378899999999999999999999999998887654 5688889999999999999999999999998864
Q ss_pred ------hhccccccchhhhhcc--cCCCCccccc
Q 044796 158 ------ILGRFGMSTDNFKAVK--DPNTGAYSIS 183 (186)
Q Consensus 158 ------~~~~~~~A~~~~~~~~--~~~~~~~~~~ 183 (186)
...-|+.|..+|+++. +|++..|...
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ks 119 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKS 119 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 2345889999999884 7777666543
No 152
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=2.3e-09 Score=70.48 Aligned_cols=99 Identities=23% Similarity=0.361 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYM-----KALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL 148 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 148 (186)
.-+-.-|.-++..|+|++|...|..||.+-|..+ ..+.+.|.++.+++..+.|+....++++++|.+..+....+
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 5566778999999999999999999999988653 47888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccccchhhhhcccCCC
Q 044796 149 RKLKEMGNSILGRFGMSTDNFKAVKDPNT 177 (186)
Q Consensus 149 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 177 (186)
.++.. +.+|++|++.|++++..+|
T Consensus 176 eayek-----~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 176 EAYEK-----MEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHHh-----hhhHHHHHHHHHHHHHhCc
Confidence 99988 8999999999999864443
No 153
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.01 E-value=1.3e-08 Score=76.47 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=120.6
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK 85 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (186)
+.++.--+.+...|+|++|.+...+.+...|++.++.+--.... ..+..+++.+.+...+...... ...+..|.|+++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHH
Confidence 45666667788899999999999999999999998877655444 5566677776666555322111 223789999999
Q ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-------------------------
Q 044796 86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN------------------------- 140 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------------------------- 140 (186)
++..++|+..++ ..++.+.......|.+++++|+|++|++.|+..++.+.++
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~ 168 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVP 168 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhcc
Confidence 999999999998 5677778889999999999999999999999997654332
Q ss_pred ------hHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796 141 ------NQAKRTILRKLKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 141 ------~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
.+..++.+.++.. .|+|.+|++.++.+
T Consensus 169 ~v~e~syel~yN~Ac~~i~-----~gky~qA~elL~kA 201 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIE-----NGKYNQAIELLEKA 201 (652)
T ss_pred CCCcchHHHHHHHHHHHHh-----cccHHHHHHHHHHH
Confidence 2334455545555 88899999998877
No 154
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.01 E-value=3.8e-09 Score=75.21 Aligned_cols=136 Identities=21% Similarity=0.178 Sum_probs=96.8
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
.++.+...|+.+...|+|++|..+|.++....-... .....+..+...+.++.
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~---------------------------~~~~Aa~~~~~Aa~~~k 86 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG---------------------------DKFEAAKAYEEAANCYK 86 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT----------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC---------------------------CHHHHHHHHHHHHHHHH
Confidence 356666777888889999999999999877654311 11113467777777776
Q ss_pred hhccHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHH
Q 044796 85 KLGKFEESIKECTKALELNP------TYMKALIRRAEAHEKL-EHFEEAIADMKKILEFDPSNN------QAKRTILRKL 151 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~ 151 (186)
+. ++++|+.++++++.+.- .-...+..+|.++... |++++|+..|++|+++..... .+...++.++
T Consensus 87 ~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 87 KG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred hh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 55 99999999999998732 2256888999999999 999999999999998744332 2334444444
Q ss_pred HHHHHHhhccccccchhhhhcc
Q 044796 152 KEMGNSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 152 ~~~~~~~~~~~~~A~~~~~~~~ 173 (186)
.. .++|++|++.|+++.
T Consensus 166 ~~-----l~~y~~A~~~~e~~~ 182 (282)
T PF14938_consen 166 AR-----LGRYEEAIEIYEEVA 182 (282)
T ss_dssp HH-----TT-HHHHHHHHHHHH
T ss_pred HH-----hCCHHHHHHHHHHHH
Confidence 44 899999999998774
No 155
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.99 E-value=1.5e-08 Score=72.09 Aligned_cols=153 Identities=21% Similarity=0.210 Sum_probs=84.9
Q ss_pred HHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc-
Q 044796 10 KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG- 87 (186)
Q Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~- 87 (186)
...|.++...|++++|++.+.+. .+.+.......++ ..+..+.+.+.+........+..-.....+++.+..|
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCc
Confidence 44455666666666666666543 2233332222222 3333333333332222222222222333333444444
Q ss_pred -cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc-cc
Q 044796 88 -KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG-MS 165 (186)
Q Consensus 88 -~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~-~A 165 (186)
++.+|...|+......|..+..+..++.|+..+|++++|...+.+++..+|+++.+..++..+... .|+.. .+
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~-----~gk~~~~~ 255 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLH-----LGKPTEAA 255 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHH-----TT-TCHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----hCCChhHH
Confidence 578888888887777677788888888888888888888888888888888888888888766666 55553 23
Q ss_pred chhhhhc
Q 044796 166 TDNFKAV 172 (186)
Q Consensus 166 ~~~~~~~ 172 (186)
.+++.+.
T Consensus 256 ~~~l~qL 262 (290)
T PF04733_consen 256 ERYLSQL 262 (290)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 3344444
No 156
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.99 E-value=3.2e-08 Score=70.62 Aligned_cols=145 Identities=21% Similarity=0.168 Sum_probs=111.8
Q ss_pred HHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchh-------------------
Q 044796 10 KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMA------------------- 69 (186)
Q Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------------- 69 (186)
.=+|.|+++.|+|++|...|.-+...+.-+.+.+..++.+. ..+...++.......+...
T Consensus 61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~ 140 (557)
T KOG3785|consen 61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI 140 (557)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence 34699999999999999999999987777778888888665 3344333332222222111
Q ss_pred -------HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH
Q 044796 70 -------ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ 142 (186)
Q Consensus 70 -------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 142 (186)
.+...-...+|.++...-.|++||..|++.+.-+|........++.||+++.-|+-+.+.+.-.++..|+++.
T Consensus 141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdSti 220 (557)
T KOG3785|consen 141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTI 220 (557)
T ss_pred HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHH
Confidence 1112334556777777779999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 044796 143 AKRTILRKLKEM 154 (186)
Q Consensus 143 ~~~~l~~~~~~~ 154 (186)
+....+..+.++
T Consensus 221 A~NLkacn~fRl 232 (557)
T KOG3785|consen 221 AKNLKACNLFRL 232 (557)
T ss_pred HHHHHHHHHhhh
Confidence 988877655543
No 157
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.99 E-value=5.2e-10 Score=79.17 Aligned_cols=98 Identities=23% Similarity=0.262 Sum_probs=88.6
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 044796 76 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG 155 (186)
Q Consensus 76 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 155 (186)
.-..|..|+++|.|++||.||.+++..+|.++..+.+++.+|+++..|..|...+..++.++.....++...+.+-..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~-- 177 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES-- 177 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH--
Confidence 467899999999999999999999999999999999999999999999999999999999999988898888877777
Q ss_pred HHhhccccccchhhhhcccCCCC
Q 044796 156 NSILGRFGMSTDNFKAVKDPNTG 178 (186)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~~~~~~ 178 (186)
+|...+|.+.++.++..+|.
T Consensus 178 ---Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 178 ---LGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred ---HhhHHHHHHhHHHHHhhCcc
Confidence 88888999999988644443
No 158
>PRK11906 transcriptional regulator; Provisional
Probab=98.98 E-value=3.5e-08 Score=72.85 Aligned_cols=82 Identities=2% Similarity=-0.221 Sum_probs=49.3
Q ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccc
Q 044796 87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMST 166 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~ 166 (186)
....+|....++|++++|.++.++..+|.++...|+++.|...|++|+.++|+.+.+++..|.++.. .|+.++|+
T Consensus 318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-----~G~~~~a~ 392 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-----NEKIEEAR 392 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-----cCCHHHHH
Confidence 3445556666666666666666666666666666666666666666666666666666666644444 56666666
Q ss_pred hhhhhcc
Q 044796 167 DNFKAVK 173 (186)
Q Consensus 167 ~~~~~~~ 173 (186)
+.+++++
T Consensus 393 ~~i~~al 399 (458)
T PRK11906 393 ICIDKSL 399 (458)
T ss_pred HHHHHHh
Confidence 6665554
No 159
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.98 E-value=3e-08 Score=70.64 Aligned_cols=141 Identities=18% Similarity=0.193 Sum_probs=91.2
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
.+..+...|.++.+. ++++|+.+|++++.+.-... ....-+.++..+|.++.
T Consensus 74 Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G---------------------------~~~~aA~~~~~lA~~ye 125 (282)
T PF14938_consen 74 AAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG---------------------------RFSQAAKCLKELAEIYE 125 (282)
T ss_dssp HHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT----------------------------HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC---------------------------cHHHHHHHHHHHHHHHH
Confidence 345555555555444 77788888888777643311 11123478899999999
Q ss_pred hh-ccHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH--HHH
Q 044796 85 KL-GKFEESIKECTKALELNPT------YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLK--EMG 155 (186)
Q Consensus 85 ~~-~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~--~~~ 155 (186)
.. |++++|+.+|++|+..... ....+..+|.++..+|+|++|+..|+++....-+++.........+. -++
T Consensus 126 ~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~ 205 (282)
T PF14938_consen 126 EQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILC 205 (282)
T ss_dssp CTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 99 9999999999999987322 24577889999999999999999999998865443322222221111 122
Q ss_pred HHhhccccccchhhhhcc
Q 044796 156 NSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~ 173 (186)
....|+...|.+.++...
T Consensus 206 ~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 206 HLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHTT-HHHHHHHHHHHG
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 223677777777777664
No 160
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.97 E-value=7e-09 Score=71.40 Aligned_cols=94 Identities=16% Similarity=0.162 Sum_probs=85.6
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHH
Q 044796 76 HSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN---NQAKRTILR 149 (186)
Q Consensus 76 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~ 149 (186)
.+..|.-+...|+|..|...|..-++..|+. +.++++||.+++.+|++++|...|..+.+-.|++ +++...+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7889999999999999999999999999976 6899999999999999999999999999988876 577888998
Q ss_pred HHHHHHHHhhccccccchhhhhccc
Q 044796 150 KLKEMGNSILGRFGMSTDNFKAVKD 174 (186)
Q Consensus 150 ~~~~~~~~~~~~~~~A~~~~~~~~~ 174 (186)
++.. +++.++|...|..++.
T Consensus 224 ~~~~-----l~~~d~A~atl~qv~k 243 (262)
T COG1729 224 SLGR-----LGNTDEACATLQQVIK 243 (262)
T ss_pred HHHH-----hcCHHHHHHHHHHHHH
Confidence 8888 8999999999988763
No 161
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.97 E-value=9.8e-08 Score=66.39 Aligned_cols=131 Identities=11% Similarity=0.075 Sum_probs=101.1
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK 85 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (186)
..+.+.+|.++++.+++++|+..+++.++.+|+++ ... .+++.+|.++..
T Consensus 69 ~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~--------------------------~~~----~a~Y~~g~~~~~ 118 (243)
T PRK10866 69 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP--------------------------NID----YVLYMRGLTNMA 118 (243)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC--------------------------chH----HHHHHHHHhhhh
Confidence 34578899999999999999999999999999943 332 777777776533
Q ss_pred hc------------------cHHHHHHHHHHHHhcCcccHH-----------------HHHHHHHHHHHhcCHHHHHHHH
Q 044796 86 LG------------------KFEESIKECTKALELNPTYMK-----------------ALIRRAEAHEKLEHFEEAIADM 130 (186)
Q Consensus 86 ~~------------------~~~~A~~~~~~al~~~p~~~~-----------------~~~~lg~~~~~~g~~~~A~~~~ 130 (186)
.+ ...+|+..+++.++..|+... --+..|..|.+.|.+..|+.-+
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~ 198 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRV 198 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHH
Confidence 32 245788999999999997631 1234577799999999999999
Q ss_pred HHHHhcCCCCh---HHHHHHHHHHHHHHHHhhccccccchhhhh
Q 044796 131 KKILEFDPSNN---QAKRTILRKLKEMGNSILGRFGMSTDNFKA 171 (186)
Q Consensus 131 ~~al~~~p~~~---~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~ 171 (186)
+.+++.-|+.+ ++...+..++.. +|..++|......
T Consensus 199 ~~v~~~Yp~t~~~~eal~~l~~ay~~-----lg~~~~a~~~~~~ 237 (243)
T PRK10866 199 EQMLRDYPDTQATRDALPLMENAYRQ-----LQLNAQADKVAKI 237 (243)
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHH-----cCChHHHHHHHHH
Confidence 99999988764 566677777777 7777777665543
No 162
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.97 E-value=1.3e-08 Score=74.86 Aligned_cols=98 Identities=21% Similarity=0.201 Sum_probs=88.2
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK 85 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (186)
++....++.+++..++-.+|+..+.+++...|.+ +..+...+..+..
T Consensus 200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d---------------------------------~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 200 PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQD---------------------------------SELLNLQAEFLLS 246 (395)
T ss_pred CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC---------------------------------HHHHHHHHHHHHh
Confidence 4556678889999999999999999999999982 3788889999999
Q ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796 86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF 136 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (186)
.++++.|+...+++++..|++...|+.++.+|..+|+++.|+..++.+=..
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 999999999999999999999999999999999999999999888755433
No 163
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.96 E-value=8.7e-08 Score=64.99 Aligned_cols=121 Identities=17% Similarity=0.238 Sum_probs=91.9
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
..++.+.+|.+++..|++++|+..|++.++..|+++ ... .+++.+|.++.
T Consensus 41 a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~--------------------------~~~----~A~Y~~g~~~~ 90 (203)
T PF13525_consen 41 APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP--------------------------KAD----YALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T--------------------------THH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc--------------------------chh----hHHHHHHHHHH
Confidence 457789999999999999999999999999999943 222 66777777655
Q ss_pred hh-----------ccHHHHHHHHHHHHhcCcccH-----------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796 85 KL-----------GKFEESIKECTKALELNPTYM-----------------KALIRRAEAHEKLEHFEEAIADMKKILEF 136 (186)
Q Consensus 85 ~~-----------~~~~~A~~~~~~al~~~p~~~-----------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (186)
.+ +...+|+..|+..+...|+.+ .--+..|..|.+.|.+..|+..++.+++.
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 43 345699999999999999863 12345688899999999999999999999
Q ss_pred CCCChH---HHHHHHHHHHHHH
Q 044796 137 DPSNNQ---AKRTILRKLKEMG 155 (186)
Q Consensus 137 ~p~~~~---~~~~l~~~~~~~~ 155 (186)
-|+.+. ++..+..++..+|
T Consensus 171 yp~t~~~~~al~~l~~~y~~l~ 192 (203)
T PF13525_consen 171 YPDTPAAEEALARLAEAYYKLG 192 (203)
T ss_dssp STTSHHHHHHHHHHHHHHHHTT
T ss_pred CCCCchHHHHHHHHHHHHHHhC
Confidence 999864 4566666666633
No 164
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.94 E-value=6.1e-09 Score=82.40 Aligned_cols=149 Identities=15% Similarity=0.177 Sum_probs=125.2
Q ss_pred cccHHHHHHHHHHHHhccCCChhhhhccchhhhhc-Cc----hhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHH
Q 044796 19 EGKYEEALLQYEVALRVASVPERAESASAPEAKEG-QS----ASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESI 93 (186)
Q Consensus 19 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 93 (186)
.++...|...|-++++++|....++..+|.++..- +- ....+++...+. ...++-..+.++....+++.|.
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat----daeaaaa~adtyae~~~we~a~ 546 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT----DAEAAAASADTYAEESTWEEAF 546 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch----hhhhHHHHHHHhhccccHHHHH
Confidence 44588999999999999999999999999887432 22 334445555554 4488889999999999999999
Q ss_pred HHHHHHHhcCccc--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhh
Q 044796 94 KECTKALELNPTY--MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKA 171 (186)
Q Consensus 94 ~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~ 171 (186)
..+-.+-+..|-. ...|..+|..+...+++.+|+..|+.+++.+|.+...|..+|.+|.. .|++..|++.|.+
T Consensus 547 ~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~-----sGry~~AlKvF~k 621 (1238)
T KOG1127|consen 547 EICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE-----SGRYSHALKVFTK 621 (1238)
T ss_pred HHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh-----cCceehHHHhhhh
Confidence 9988877777744 45677799999999999999999999999999999999999999999 9999999999988
Q ss_pred cc--cCC
Q 044796 172 VK--DPN 176 (186)
Q Consensus 172 ~~--~~~ 176 (186)
+. +|.
T Consensus 622 As~LrP~ 628 (1238)
T KOG1127|consen 622 ASLLRPL 628 (1238)
T ss_pred hHhcCcH
Confidence 84 553
No 165
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.9e-09 Score=71.66 Aligned_cols=95 Identities=20% Similarity=0.269 Sum_probs=88.0
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
.-.-..|..++....|..|+.+|.+++.++|..+..+.+.+.|++++.+++.+....+++++++|+...+++.+|.++..
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~ 90 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ 90 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence 34456788888889999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHhhccccccchhhhhcc
Q 044796 154 MGNSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 154 ~~~~~~~~~~~A~~~~~~~~ 173 (186)
...|++||..+.++.
T Consensus 91 -----s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 91 -----SKGYDEAIKVLQRAY 105 (284)
T ss_pred -----hccccHHHHHHHHHH
Confidence 999999999998883
No 166
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.91 E-value=6e-08 Score=77.69 Aligned_cols=160 Identities=18% Similarity=0.173 Sum_probs=120.6
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHH-HHHhh
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRG-ICFLK 85 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~ 85 (186)
.+++.+|.||-+.|++++|...|+++++.+|+++.+...+|-.+...+.+.+ ..++..+ ..+..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~dL~KA---------------~~m~~KAV~~~i~ 181 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEEDKEKA---------------ITYLKKAIYRFIK 181 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhhHHHH---------------HHHHHHHHHHHHh
Confidence 5889999999999999999999999999999999999888876643322221 2222222 44667
Q ss_pred hccHHHHHHHHHHHHhcCcccHHHHH--------HHH------------HHHHHhcCHHHHHHHHHHHHhcCCCChHHHH
Q 044796 86 LGKFEESIKECTKALELNPTYMKALI--------RRA------------EAHEKLEHFEEAIADMKKILEFDPSNNQAKR 145 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~~~~~~~--------~lg------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 145 (186)
.++|.++...+.+.+..+|++.+.+. .+| .+|...+++++++..++.+++++|+|..+..
T Consensus 182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~ 261 (906)
T PRK14720 182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKARE 261 (906)
T ss_pred hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHH
Confidence 78999999999999999998765422 224 6788888999999999999999999999999
Q ss_pred HHHHHHHHHHHH---------------hhccccccchhhhhcccCCCCccc
Q 044796 146 TILRKLKEMGNS---------------ILGRFGMSTDNFKAVKDPNTGAYS 181 (186)
Q Consensus 146 ~l~~~~~~~~~~---------------~~~~~~~A~~~~~~~~~~~~~~~~ 181 (186)
.++.++...-.. .-..+..|+..|++-+..++++|-
T Consensus 262 ~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G~yv 312 (906)
T PRK14720 262 ELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTGNFV 312 (906)
T ss_pred HHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCCCEE
Confidence 999988632110 012346677777776655555553
No 167
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.89 E-value=1.2e-07 Score=61.85 Aligned_cols=125 Identities=17% Similarity=0.216 Sum_probs=102.6
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhc-cCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRV-ASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
....+.+|+.+...|++.+|..+|++++.- ..+ ++.++..+++..+
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~---------------------------------d~a~lLglA~Aqf 135 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAH---------------------------------DAAMLLGLAQAQF 135 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCC---------------------------------CHHHHHHHHHHHH
Confidence 345678899999999999999999998863 333 2377888999999
Q ss_pred hhccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccc
Q 044796 85 KLGKFEESIKECTKALELNPT--YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRF 162 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 162 (186)
..+++..|...+++..+.+|. .|..+..+|.++..+|.+.+|...|+.++...|+ +.+....+..+.. +|+.
T Consensus 136 a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~-----qgr~ 209 (251)
T COG4700 136 AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAK-----QGRL 209 (251)
T ss_pred hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHH-----hcch
Confidence 999999999999999998875 4778888999999999999999999999999887 6677778888888 5555
Q ss_pred cccchhh
Q 044796 163 GMSTDNF 169 (186)
Q Consensus 163 ~~A~~~~ 169 (186)
+++...+
T Consensus 210 ~ea~aq~ 216 (251)
T COG4700 210 REANAQY 216 (251)
T ss_pred hHHHHHH
Confidence 5554443
No 168
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.88 E-value=6.3e-09 Score=52.49 Aligned_cols=42 Identities=26% Similarity=0.366 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796 108 KALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR 149 (186)
Q Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 149 (186)
.++..+|.++..+|++++|++.|+++++.+|+++.+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 456666666777777777777777777777776666666553
No 169
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.87 E-value=4.6e-08 Score=61.36 Aligned_cols=101 Identities=20% Similarity=0.123 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH---HHHH
Q 044796 73 SICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ---AKRT 146 (186)
Q Consensus 73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~ 146 (186)
+..++..|...++.|+|++|+..|+.+....|.. ..+.+.+|.+++..|++++|+..+++.++++|.++. +++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4788999999999999999999999999988764 678999999999999999999999999999999864 4666
Q ss_pred HHHHHHHHHHH----------hhccccccchhhhhcc
Q 044796 147 ILRKLKEMGNS----------ILGRFGMSTDNFKAVK 173 (186)
Q Consensus 147 l~~~~~~~~~~----------~~~~~~~A~~~~~~~~ 173 (186)
.|.+....... -.+....|...|+..+
T Consensus 90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv 126 (142)
T PF13512_consen 90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLV 126 (142)
T ss_pred HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHH
Confidence 66555543320 0222456666676665
No 170
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=1.7e-08 Score=70.41 Aligned_cols=158 Identities=11% Similarity=-0.001 Sum_probs=88.9
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchh-hhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPE-AKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK 85 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (186)
..+..+|.||+...+|..|.+||++.-.+.|.........+.. +...-..++...+............+....+.+...
T Consensus 45 AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYs 124 (459)
T KOG4340|consen 45 AGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYS 124 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Confidence 3467789999999999999999999999999876544433322 233333344433333333333333444444444445
Q ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccccc
Q 044796 86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMS 165 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A 165 (186)
.+++..+....++.-. .+......+.|.+.++.|+++.|++-|+.+++...-++..-++++.+... .+++..|
T Consensus 125 e~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~-----~~qyasA 197 (459)
T KOG4340|consen 125 EGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS-----SRQYASA 197 (459)
T ss_pred cccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh-----hhhHHHH
Confidence 5555544333332211 13344555566666666666666666666666666555555555544444 5555555
Q ss_pred chhhhh
Q 044796 166 TDNFKA 171 (186)
Q Consensus 166 ~~~~~~ 171 (186)
.++-..
T Consensus 198 Lk~iSE 203 (459)
T KOG4340|consen 198 LKHISE 203 (459)
T ss_pred HHHHHH
Confidence 555433
No 171
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.81 E-value=1.2e-08 Score=51.41 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAE 115 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~ 115 (186)
.++..+|..+...|++++|+..|+++++.+|+++.+|..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 678999999999999999999999999999999999999885
No 172
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.79 E-value=5.7e-08 Score=59.65 Aligned_cols=96 Identities=24% Similarity=0.228 Sum_probs=80.8
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh----HHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN----QAKRTILR 149 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~ 149 (186)
..+-..|......|+.+.|++.|.+++.+-|..+.+|.+.+.++..+|+.++|++.+++++++...-. .++...|.
T Consensus 44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL 123 (175)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence 45566788888999999999999999999999999999999999999999999999999999976543 23455555
Q ss_pred HHHHHHHHhhccccccchhhhhccc
Q 044796 150 KLKEMGNSILGRFGMSTDNFKAVKD 174 (186)
Q Consensus 150 ~~~~~~~~~~~~~~~A~~~~~~~~~ 174 (186)
++.. +|+-+.|...|+.+-.
T Consensus 124 lyRl-----~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 124 LYRL-----LGNDDAARADFEAAAQ 143 (175)
T ss_pred HHHH-----hCchHHHHHhHHHHHH
Confidence 5555 8888888888877643
No 173
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.79 E-value=8e-08 Score=73.61 Aligned_cols=109 Identities=8% Similarity=0.075 Sum_probs=85.6
Q ss_pred HHhhCCCcchhHHHHHHHHHHHHHHhhh--------ccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhcCHHHHHH
Q 044796 59 KKEVAPAPEMAELRSICHSNRGICFLKL--------GKFEESIKECTKALEL--NPTYMKALIRRAEAHEKLEHFEEAIA 128 (186)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~--------~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 128 (186)
.+++...|... .++..++.++... .+...+.....+++.. +|.++.++.-+|......|++++|..
T Consensus 366 e~Ai~ldP~~a----~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~ 441 (517)
T PRK10153 366 EEILKSEPDFT----YAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQ 441 (517)
T ss_pred HHHHHhCCCcH----HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 45555566554 6666666665443 2345667777776664 77788899999999999999999999
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796 129 DMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT 177 (186)
Q Consensus 129 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 177 (186)
.+++++.++| +..++..+|.++.. .|++++|++.|+++...+|
T Consensus 442 ~l~rAl~L~p-s~~a~~~lG~~~~~-----~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 442 AINKAIDLEM-SWLNYVLLGKVYEL-----KGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHhcCC
Confidence 9999999999 47899999998888 9999999999999954433
No 174
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.78 E-value=4.6e-09 Score=74.13 Aligned_cols=104 Identities=27% Similarity=0.452 Sum_probs=95.1
Q ss_pred hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796 3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC 82 (186)
Q Consensus 3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 82 (186)
.+.+......+...+..|++++|+++|..+|.++|. .+.++..++.+
T Consensus 111 ~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~---------------------------------~a~l~~kr~sv 157 (377)
T KOG1308|consen 111 MDQANDKKVQASEALNDGEFDTAIELFTSAIELNPP---------------------------------LAILYAKRASV 157 (377)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhcccccccccCCc---------------------------------hhhhcccccce
Confidence 456667777888899999999999999999999999 44788899999
Q ss_pred HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 044796 83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS 139 (186)
Q Consensus 83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 139 (186)
+.++++...|+..|..+++++|+....+-..|.+...+|++++|...+..+.+++-+
T Consensus 158 ~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 158 FLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD 214 (377)
T ss_pred eeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999999999999999999999999988643
No 175
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.78 E-value=9.7e-07 Score=60.56 Aligned_cols=107 Identities=20% Similarity=0.218 Sum_probs=90.8
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
-+..|++.|...++.|+|++|++.|+.+....|-. +- ...+...++.++.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s--------------------------~~----~~qa~l~l~yA~Y 82 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFS--------------------------PY----SEQAQLDLAYAYY 82 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--------------------------cc----cHHHHHHHHHHHH
Confidence 46789999999999999999999999999999983 22 2388899999999
Q ss_pred hhccHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHhc--------CHHHHHHHHHHHHhcCCCCh
Q 044796 85 KLGKFEESIKECTKALELNPTYM---KALIRRAEAHEKLE--------HFEEAIADMKKILEFDPSNN 141 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g--------~~~~A~~~~~~al~~~p~~~ 141 (186)
+.+++++|+...++-+...|+++ .+++..|.+++..= -..+|+..|+..+..-|++.
T Consensus 83 k~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 83 KNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred hcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 99999999999999999988775 47888888865433 23578999999999999863
No 176
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.75 E-value=9.8e-09 Score=48.55 Aligned_cols=33 Identities=36% Similarity=0.364 Sum_probs=28.1
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHH
Q 044796 95 ECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 127 (186)
Q Consensus 95 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~ 127 (186)
+|+++++++|+++.+|+++|.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 367888888888888888888888888888875
No 177
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.75 E-value=8e-07 Score=64.16 Aligned_cols=159 Identities=14% Similarity=0.083 Sum_probs=113.4
Q ss_pred HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhh------------------------------------
Q 044796 8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAK------------------------------------ 51 (186)
Q Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~------------------------------------ 51 (186)
....++......|+++.|.....++++..|.++.+......++.
T Consensus 155 v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~g 234 (400)
T COG3071 155 VELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEG 234 (400)
T ss_pred HHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHH
Confidence 35566778888899999999999999999998876543321110
Q ss_pred -------hcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc----------------------
Q 044796 52 -------EGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALEL---------------------- 102 (186)
Q Consensus 52 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------------------- 102 (186)
.++.+.....++..|....-++......+.-+...|+.++|......+++.
T Consensus 235 lL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~ 314 (400)
T COG3071 235 LLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLI 314 (400)
T ss_pred HHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHH
Confidence 001112122333334333334566677777788888888887777776654
Q ss_pred ---------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796 103 ---------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 103 ---------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
.|++|..+..+|..+.+.+.+.+|..+|+.+++..|+ ...+..++.++.. +|+...|...++.+
T Consensus 315 k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~-----~g~~~~A~~~r~e~ 387 (400)
T COG3071 315 KAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQ-----LGEPEEAEQVRREA 387 (400)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHH-----cCChHHHHHHHHHH
Confidence 4667888999999999999999999999999998887 4568888988888 77777777777655
No 178
>PLN03077 Protein ECB2; Provisional
Probab=98.74 E-value=2e-07 Score=76.14 Aligned_cols=168 Identities=14% Similarity=0.034 Sum_probs=123.8
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHh--ccCCChhhhhccchhhhhcCchhHHHhhCCCcchh--HHHHHHHHHHHHH
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALR--VASVPERAESASAPEAKEGQSASEKKEVAPAPEMA--ELRSICHSNRGIC 82 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~ 82 (186)
..|..+...+...|+.++|+..|++..+ ..|+.......+..+...+..++....+....... ..+...|..+...
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 3477778888999999999999998876 45665554444444445555555444433222111 1133688889999
Q ss_pred HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccc
Q 044796 83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRF 162 (186)
Q Consensus 83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 162 (186)
+.+.|++++|...+++. ...|+ +..|..+-.++...|+.+.+....++.++++|++...+..++.++.. .|++
T Consensus 635 l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~-----~g~~ 707 (857)
T PLN03077 635 LGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYAD-----AGKW 707 (857)
T ss_pred HHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH-----CCCh
Confidence 99999999999999875 45665 55666665567788999999999999999999999999999999988 9999
Q ss_pred cccchhhhhc----ccCCCCccc
Q 044796 163 GMSTDNFKAV----KDPNTGAYS 181 (186)
Q Consensus 163 ~~A~~~~~~~----~~~~~~~~~ 181 (186)
++|.+..+.. +.++++.-+
T Consensus 708 ~~a~~vr~~M~~~g~~k~~g~s~ 730 (857)
T PLN03077 708 DEVARVRKTMRENGLTVDPGCSW 730 (857)
T ss_pred HHHHHHHHHHHHcCCCCCCCccE
Confidence 9999988655 345555433
No 179
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=7.2e-07 Score=67.41 Aligned_cols=160 Identities=14% Similarity=0.121 Sum_probs=98.1
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK 85 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (186)
..++...-.++++.++|++|+...+.-......+...+.-.-+.+..+..+.+...+..... ....+.-..|+++++
T Consensus 46 ~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~~~~~---~~~~ll~L~AQvlYr 122 (652)
T KOG2376|consen 46 EDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLKGLDR---LDDKLLELRAQVLYR 122 (652)
T ss_pred HhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHhcccc---cchHHHHHHHHHHHH
Confidence 34555555666666777776633332221111111111111122344555555555442211 123577888999999
Q ss_pred hccHHHHHHHHHHHHhcCcc-------------------------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 044796 86 LGKFEESIKECTKALELNPT-------------------------------YMKALIRRAEAHEKLEHFEEAIADMKKIL 134 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~-------------------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (186)
+|+|++|+..|+..++.+.+ ..+.+++.+.++...|+|.+|++.+++++
T Consensus 123 l~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 123 LERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred HhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999998654322 34578899999999999999999999994
Q ss_pred hc--------CCCChH-------HHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796 135 EF--------DPSNNQ-------AKRTILRKLKEMGNSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 135 ~~--------~p~~~~-------~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~ 173 (186)
.+ +.+..+ +...++.++.. +|+..+|...|...+
T Consensus 203 ~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~-----~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 203 RICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL-----QGQTAEASSIYVDII 251 (652)
T ss_pred HHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH-----hcchHHHHHHHHHHH
Confidence 43 122122 33444444444 999999999887765
No 180
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.70 E-value=1.4e-07 Score=75.38 Aligned_cols=159 Identities=13% Similarity=0.044 Sum_probs=114.8
Q ss_pred HHHHhHhHHHHcccHHHHHHHHHHHHhc--cCCChhhhhccchhhhhcCchhHHHhhCCCcchhH--HHHHHHHHHHHHH
Q 044796 8 EAKLEGNKLFAEGKYEEALLQYEVALRV--ASVPERAESASAPEAKEGQSASEKKEVAPAPEMAE--LRSICHSNRGICF 83 (186)
Q Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~ 83 (186)
.|..+...+.+.|+.++|+..|++..+. .|+.......+..+...+..+.+...+.......+ .+...|..+...+
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 4566777788888888888888887663 44433333333333344544444443322211111 1235678888999
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG 163 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (186)
.+.|++++|...+++. ...| +...|..+..++...|+++.|...+++.+++.|++...+..+..++.. .|+++
T Consensus 473 ~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~-----~G~~~ 545 (697)
T PLN03081 473 GREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNS-----SGRQA 545 (697)
T ss_pred HhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHh-----CCCHH
Confidence 9999999999988764 3345 355688888888999999999999999999999999999999998888 99999
Q ss_pred ccchhhhhcc
Q 044796 164 MSTDNFKAVK 173 (186)
Q Consensus 164 ~A~~~~~~~~ 173 (186)
+|.+.++...
T Consensus 546 ~A~~v~~~m~ 555 (697)
T PLN03081 546 EAAKVVETLK 555 (697)
T ss_pred HHHHHHHHHH
Confidence 9999997663
No 181
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.69 E-value=5.1e-08 Score=46.21 Aligned_cols=32 Identities=31% Similarity=0.460 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 044796 108 KALIRRAEAHEKLEHFEEAIADMKKILEFDPS 139 (186)
Q Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 139 (186)
.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555555555555555555555554
No 182
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.68 E-value=6.8e-08 Score=64.50 Aligned_cols=97 Identities=22% Similarity=0.268 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796 71 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK 150 (186)
Q Consensus 71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 150 (186)
.++..++.+|..|-..|-+.-|...|.+++.+.|+-+.++..+|.-+...|+|+.|.+.|...++++|.+.-++.+.|..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999998888865
Q ss_pred HHHHHHHhhccccccchhhhhc
Q 044796 151 LKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 151 ~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
+.- -|++..|.+.+.+-
T Consensus 143 ~YY-----~gR~~LAq~d~~~f 159 (297)
T COG4785 143 LYY-----GGRYKLAQDDLLAF 159 (297)
T ss_pred eee-----cCchHhhHHHHHHH
Confidence 555 78888887776544
No 183
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.66 E-value=4.4e-07 Score=62.44 Aligned_cols=135 Identities=15% Similarity=0.154 Sum_probs=107.7
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhcc-CCChhhhhccchhh-hhcCchhHHHhhCCC----cc--hhHHHHHHHH
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVA-SVPERAESASAPEA-KEGQSASEKKEVAPA----PE--MAELRSICHS 77 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~--~~~~~~~~~~ 77 (186)
....+.+..++...|.|.-++..+.+.++.+ |..+.....+|.+. +.++.+.+....... .. ..........
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 3445667788889999999999999999998 55777777788765 556665554433211 10 1111235667
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 044796 78 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN 140 (186)
Q Consensus 78 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 140 (186)
+.+.++...+++..|...+.+.+..+|.++.+..+.|.|+..+|+..+|++..+.+++..|..
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 788899999999999999999999999999999999999999999999999999999999974
No 184
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.65 E-value=1.1e-07 Score=45.00 Aligned_cols=33 Identities=39% Similarity=0.521 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 044796 108 KALIRRAEAHEKLEHFEEAIADMKKILEFDPSN 140 (186)
Q Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 140 (186)
.+++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456666666666666666666666666666654
No 185
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.65 E-value=7.6e-08 Score=45.59 Aligned_cols=33 Identities=33% Similarity=0.592 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTY 106 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 106 (186)
.+|+.+|.++..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 689999999999999999999999999999974
No 186
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.65 E-value=1.2e-07 Score=67.62 Aligned_cols=161 Identities=12% Similarity=0.067 Sum_probs=110.5
Q ss_pred HHHhHhHHHHcccHHHHHHHHHHHHhccCC--Chhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796 9 AKLEGNKLFAEGKYEEALLQYEVALRVASV--PERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK 85 (186)
Q Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (186)
...++..+...++-+.++..++..+..... ++......|.+. ..++.+++.+.+.... +..+......++..
T Consensus 69 v~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~-----~lE~~al~Vqi~L~ 143 (290)
T PF04733_consen 69 VRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGG-----SLELLALAVQILLK 143 (290)
T ss_dssp HHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTT-----CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccC-----cccHHHHHHHHHHH
Confidence 344444444445667777777665543322 222222333333 4455566666555442 33666677889999
Q ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796 86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE--HFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG 163 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (186)
+++++.|.+.++..-+++++..-.....|++....| .+.+|.-.|+...+..|.++.....++.+... +|+++
T Consensus 144 ~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-----~~~~~ 218 (290)
T PF04733_consen 144 MNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-----LGHYE 218 (290)
T ss_dssp TT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-----CT-HH
T ss_pred cCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-----hCCHH
Confidence 999999999999999998888777777777777767 58999999999988888899999999988877 99999
Q ss_pred ccchhhhhcccCCCCc
Q 044796 164 MSTDNFKAVKDPNTGA 179 (186)
Q Consensus 164 ~A~~~~~~~~~~~~~~ 179 (186)
+|.+.++.+++.++..
T Consensus 219 eAe~~L~~al~~~~~~ 234 (290)
T PF04733_consen 219 EAEELLEEALEKDPND 234 (290)
T ss_dssp HHHHHHHHHCCC-CCH
T ss_pred HHHHHHHHHHHhccCC
Confidence 9999999887555443
No 187
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.63 E-value=1.2e-06 Score=70.11 Aligned_cols=161 Identities=15% Similarity=0.094 Sum_probs=95.2
Q ss_pred HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChh-hh-----------------------------------hccchhh-
Q 044796 8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPER-AE-----------------------------------SASAPEA- 50 (186)
Q Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~-----------------------------------~~~~~~~- 50 (186)
.|..+...+.+.|++++|+..|++.++..+.... .+ ..+...+
T Consensus 191 t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~ 270 (697)
T PLN03081 191 SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS 270 (697)
T ss_pred eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHH
Confidence 3666777888899999999999998765432211 11 0011111
Q ss_pred hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhcCHHHHHH
Q 044796 51 KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALEL--NPTYMKALIRRAEAHEKLEHFEEAIA 128 (186)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 128 (186)
+.+..+.+...+...+. .+...|..+...|.+.|++++|+..|++..+. .| +...+..+..++...|++++|.+
T Consensus 271 k~g~~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~ 346 (697)
T PLN03081 271 KCGDIEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQ 346 (697)
T ss_pred HCCCHHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccchHHHHH
Confidence 22333444444433322 13467777778888888888888888776653 33 33455566666666666666666
Q ss_pred HHHHHHhcC-CCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796 129 DMKKILEFD-PSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT 177 (186)
Q Consensus 129 ~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 177 (186)
.+..+++.. +.+..++..+...+.+ .|++++|.+.|+....++.
T Consensus 347 i~~~m~~~g~~~d~~~~~~Li~~y~k-----~G~~~~A~~vf~~m~~~d~ 391 (697)
T PLN03081 347 AHAGLIRTGFPLDIVANTALVDLYSK-----WGRMEDARNVFDRMPRKNL 391 (697)
T ss_pred HHHHHHHhCCCCCeeehHHHHHHHHH-----CCCHHHHHHHHHhCCCCCe
Confidence 666666654 3344455555555555 5666666666665554443
No 188
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.58 E-value=1.1e-06 Score=63.50 Aligned_cols=128 Identities=20% Similarity=0.140 Sum_probs=98.9
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK 85 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (186)
++.....+..+...|+.++|.+...++++..-+.. ...+......++.....+..+......|.++..+..+|..+++
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k 340 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALK 340 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 56667788889999999999999999999766644 3333333344444444444333333333445999999999999
Q ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796 86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF 136 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (186)
.+.|.+|-.+++.++...|. ...+..+|.++..+|+...|.+.++.++.+
T Consensus 341 ~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 341 NKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999998874 567888999999999999999999999854
No 189
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.58 E-value=2.2e-07 Score=43.94 Aligned_cols=34 Identities=29% Similarity=0.388 Sum_probs=31.0
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCC
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVP 39 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 39 (186)
|+.++.+|.+++..|++++|+.+|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 5789999999999999999999999999999984
No 190
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.57 E-value=3.8e-06 Score=55.07 Aligned_cols=97 Identities=16% Similarity=0.322 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALE-LNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS--NNQAKRTILRK 150 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~ 150 (186)
.-.+.+|......|++.+|...|++++. +..+++..+..++.+.+..+++..|...+++..+.+|. .+.....++++
T Consensus 90 qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 90 QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 4557789999999999999999999995 67788999999999999999999999999999999986 56778888888
Q ss_pred HHHHHHHhhccccccchhhhhcccC
Q 044796 151 LKEMGNSILGRFGMSTDNFKAVKDP 175 (186)
Q Consensus 151 ~~~~~~~~~~~~~~A~~~~~~~~~~ 175 (186)
+.. .|++.+|...|+.+++-
T Consensus 170 laa-----~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 170 LAA-----QGKYADAESAFEVAISY 189 (251)
T ss_pred HHh-----cCCchhHHHHHHHHHHh
Confidence 888 99999999999888643
No 191
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.56 E-value=1.4e-05 Score=51.27 Aligned_cols=119 Identities=19% Similarity=0.110 Sum_probs=82.9
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhcc-chhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESAS-APEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
.-+.+...|......++...++..+.+++.+...+.-.-... ..... . ..........+...++..+
T Consensus 5 ~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~---------~---r~~l~~~~~~~~~~l~~~~ 72 (146)
T PF03704_consen 5 RFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEP---------E---RERLRELYLDALERLAEAL 72 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHH---------H---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHH---------H---HHHHHHHHHHHHHHHHHHH
Confidence 345566667777888999999999999999875532111110 00000 0 0001111236677788888
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE 135 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (186)
...|++++|+..+++++..+|.+..++..+-.++...|+..+|+..|+++..
T Consensus 73 ~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 73 LEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998854
No 192
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.56 E-value=1.6e-06 Score=71.80 Aligned_cols=92 Identities=10% Similarity=0.059 Sum_probs=41.2
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Q 044796 75 CHSNRGICFLKLGKFEESIKECTKALELN-PTYMKALIRRAEAHEKLEHFEEAIADMKKILEF--DPSNNQAKRTILRKL 151 (186)
Q Consensus 75 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~ 151 (186)
.|..+...+.+.|++++|...++...+.. +.+...+..+..+|.+.|++++|...|++..+. .| +..+|..+...+
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy 729 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITAL 729 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Confidence 33344444444444444444444444332 112334444444555555555555555544332 22 233444444444
Q ss_pred HHHHHHhhccccccchhhhhc
Q 044796 152 KEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 152 ~~~~~~~~~~~~~A~~~~~~~ 172 (186)
.. .|++++|.+.|+..
T Consensus 730 ~k-----~G~~eeAlelf~eM 745 (1060)
T PLN03218 730 CE-----GNQLPKALEVLSEM 745 (1060)
T ss_pred HH-----CCCHHHHHHHHHHH
Confidence 44 55555555555433
No 193
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.53 E-value=3.2e-06 Score=69.98 Aligned_cols=93 Identities=8% Similarity=0.070 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCChHHHHHHH
Q 044796 73 SICHSNRGICFLKLGKFEESIKECTKALEL--NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF--DPSNNQAKRTIL 148 (186)
Q Consensus 73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 148 (186)
...|..+...|.+.|++++|+..|++.... .| +...|..+...|.+.|++++|++.|.+.... .|+ ..++..+.
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL 761 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILL 761 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Confidence 345666666666667777777776665442 33 3445666666666677777777777666543 233 33444444
Q ss_pred HHHHHHHHHhhccccccchhhhhc
Q 044796 149 RKLKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 149 ~~~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
..+.. .|+++.|...+..+
T Consensus 762 ~a~~k-----~G~le~A~~l~~~M 780 (1060)
T PLN03218 762 VASER-----KDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHH-----CCCHHHHHHHHHHH
Confidence 44444 66666666666555
No 194
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.52 E-value=2.3e-07 Score=67.63 Aligned_cols=135 Identities=19% Similarity=0.224 Sum_probs=83.2
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
.+..++-++|+.|+-.|+|++|+..-+.-+.+.....+- .....++.++|.++
T Consensus 193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDr---------------------------AaeRRA~sNlgN~h 245 (639)
T KOG1130|consen 193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDR---------------------------AAERRAHSNLGNCH 245 (639)
T ss_pred hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhH---------------------------HHHHHhhcccchhh
Confidence 344566678888889999999998877777664432110 00126677777777
Q ss_pred hhhccHHHHHHHHHHHHhcC----c--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHH
Q 044796 84 LKLGKFEESIKECTKALELN----P--TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS------NNQAKRTILRKL 151 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~----p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~ 151 (186)
.-+|+|+.|+++|++.+.+. . .....-|.+|..|.-+.+++.|+.++.+=+.+..+ ...+.+.||.++
T Consensus 246 iflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~ 325 (639)
T KOG1130|consen 246 IFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAF 325 (639)
T ss_pred hhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 77777777777777766432 1 22445667777777777777777777776655322 223344445444
Q ss_pred HHHHHHhhccccccchhhh
Q 044796 152 KEMGNSILGRFGMSTDNFK 170 (186)
Q Consensus 152 ~~~~~~~~~~~~~A~~~~~ 170 (186)
.. +|..+.|..+.+
T Consensus 326 ~a-----lg~h~kAl~fae 339 (639)
T KOG1130|consen 326 NA-----LGEHRKALYFAE 339 (639)
T ss_pred Hh-----hhhHHHHHHHHH
Confidence 44 444445544443
No 195
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=8.9e-06 Score=56.11 Aligned_cols=139 Identities=16% Similarity=0.176 Sum_probs=95.7
Q ss_pred HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh-
Q 044796 8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK- 85 (186)
Q Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~- 85 (186)
.+..-|.++.+.|++++|++.......+. +...-..+. +....+.+.+.++...+.+ ....+..+|..+.+
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~~lE-----~~Al~VqI~lk~~r~d~A~~~lk~mq~id--ed~tLtQLA~awv~l 182 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGENLE-----AAALNVQILLKMHRFDLAEKELKKMQQID--EDATLTQLAQAWVKL 182 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccchHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHccc--hHHHHHHHHHHHHHH
Confidence 34455688899999999999987743332 222222222 3333334444433222222 11233334444433
Q ss_pred ---hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 86 ---LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 86 ---~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
.+++.+|.-+|+..-+..|..+......+.|+..+|++++|...++.++..++++++++.++..+-..
T Consensus 183 a~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~ 253 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALH 253 (299)
T ss_pred hccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 34688999999999987777888999999999999999999999999999999999999998876666
No 196
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.47 E-value=1.6e-07 Score=44.38 Aligned_cols=34 Identities=21% Similarity=0.329 Sum_probs=30.5
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccch
Q 044796 129 DMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTD 167 (186)
Q Consensus 129 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~ 167 (186)
+|+++++++|+++.+|+++|.++.. .|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~-----~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLN-----QGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHH-----CcCHHhhcC
Confidence 4789999999999999999999999 888888763
No 197
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.45 E-value=1.7e-06 Score=62.12 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=84.2
Q ss_pred HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhh------ccchhh-hhcCchhHH----------HhhCCCcchhH
Q 044796 8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAES------ASAPEA-KEGQSASEK----------KEVAPAPEMAE 70 (186)
Q Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~------~~~~~~-~~~~~~~~~----------~~~~~~~~~~~ 70 (186)
....+|+.+...+.|+++++.|+.|++....+.++.. .+|..+ ...+.+.+. ..+........
T Consensus 124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k 203 (518)
T KOG1941|consen 124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK 203 (518)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence 4556788888899999999999999988766555443 333333 222221111 11222223334
Q ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796 71 LRSICHSNRGICFLKLGKFEESIKECTKALEL------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137 (186)
Q Consensus 71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (186)
+...+++.++..+..+|+.-.|.++++++.++ .|.......-+|.+|...|+.+.|..-|++|...-
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 45566777778888888888888888777765 23345566667788888888888887777777543
No 198
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.43 E-value=2e-05 Score=53.44 Aligned_cols=92 Identities=33% Similarity=0.446 Sum_probs=44.3
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 044796 76 HSNRGICFLKLGKFEESIKECTKALELNPT-YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEM 154 (186)
Q Consensus 76 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 154 (186)
+...+..+...++++.|+..+.+++...+. ....+..++.++...+++..|...+..++...|.....+..++..+..
T Consensus 170 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~- 248 (291)
T COG0457 170 LLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLE- 248 (291)
T ss_pred HHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHH-
Confidence 333333344445555555555555555555 355555555555555555555555555555555533333333333322
Q ss_pred HHHhhccccccchhhhhc
Q 044796 155 GNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 155 ~~~~~~~~~~A~~~~~~~ 172 (186)
.+.++.+...+.++
T Consensus 249 ----~~~~~~~~~~~~~~ 262 (291)
T COG0457 249 ----LGRYEEALEALEKA 262 (291)
T ss_pred ----cCCHHHHHHHHHHH
Confidence 33444444444443
No 199
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=2.6e-06 Score=61.20 Aligned_cols=87 Identities=17% Similarity=0.212 Sum_probs=69.0
Q ss_pred HHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHH
Q 044796 15 KLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIK 94 (186)
Q Consensus 15 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 94 (186)
.++...+|..|+..++-.+..+... ....-.++|.|++.+|+|++|+.
T Consensus 31 dfls~rDytGAislLefk~~~~~EE--------------------------------E~~~~lWia~C~fhLgdY~~Al~ 78 (557)
T KOG3785|consen 31 DFLSNRDYTGAISLLEFKLNLDREE--------------------------------EDSLQLWIAHCYFHLGDYEEALN 78 (557)
T ss_pred HHHhcccchhHHHHHHHhhccchhh--------------------------------hHHHHHHHHHHHHhhccHHHHHH
Confidence 4456677888887777665443331 12566778999999999999999
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796 95 ECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKI 133 (186)
Q Consensus 95 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (186)
.|+.+.+.+.-+.+.+.+++.|.+.+|.|.+|...-.++
T Consensus 79 ~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 79 VYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC
Confidence 999999877777889999999999999999998866655
No 200
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.41 E-value=1e-05 Score=57.62 Aligned_cols=115 Identities=10% Similarity=-0.034 Sum_probs=89.3
Q ss_pred HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh-h
Q 044796 8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK-L 86 (186)
Q Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~-~ 86 (186)
.|........+.+..+.|...|.+|++..+- ...+|...|.+.+. .
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~---------------------------------~~~vy~~~A~~E~~~~ 49 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRC---------------------------------TYHVYVAYALMEYYCN 49 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS----------------------------------THHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCC---------------------------------CHHHHHHHHHHHHHhC
Confidence 4666677777888899999999999854333 12678888888666 4
Q ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHHH
Q 044796 87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN---QAKRTILRKLKEMG 155 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~ 155 (186)
++.+.|...|+.+++..|.+...|......+...|+.+.|...|++++..-|... .+|......-...|
T Consensus 50 ~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G 121 (280)
T PF05843_consen 50 KDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG 121 (280)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC
Confidence 5556699999999999999999999999999999999999999999998877755 56666666666644
No 201
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=2.1e-06 Score=63.90 Aligned_cols=123 Identities=17% Similarity=0.094 Sum_probs=91.0
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHH-HhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVA-LRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~a-l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
+..++..+...+..|++.+|.+.+... +...|... .-|+. ..-..|.++|.+++
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~-----------------------~T~q~--~~cif~NNlGcIh~ 294 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGT-----------------------ITPQL--SSCIFNNNLGCIHY 294 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCcc-----------------------ccchh--hhheeecCcceEee
Confidence 455666677777777777777765432 11111100 00000 01256789999999
Q ss_pred hhccHHHHHHHHHHHHhc---------Cc---------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHH
Q 044796 85 KLGKFEESIKECTKALEL---------NP---------TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRT 146 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~---------~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 146 (186)
++|.|.-+..+|.+|++. .| ...+++|+.|..+...|++-.|.++|.++......+|..|..
T Consensus 295 ~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLR 374 (696)
T KOG2471|consen 295 QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLR 374 (696)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHH
Confidence 999999999999999961 11 135789999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 044796 147 ILRKLKE 153 (186)
Q Consensus 147 l~~~~~~ 153 (186)
++.+.+.
T Consensus 375 lAEcCim 381 (696)
T KOG2471|consen 375 LAECCIM 381 (696)
T ss_pred HHHHHHH
Confidence 9998765
No 202
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.36 E-value=2.5e-07 Score=68.32 Aligned_cols=98 Identities=31% Similarity=0.340 Sum_probs=86.7
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
...-..+.-.+..++|+.|+..|.++++++|+++..+-+++.++...+++..|+..+.++++++|....+++..|.+...
T Consensus 5 ~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 5 EELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA 84 (476)
T ss_pred hhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh
Confidence 34455677888899999999999999999999999999999999999999999999999999999999999999987777
Q ss_pred HHHHhhccccccchhhhhcc--cCC
Q 044796 154 MGNSILGRFGMSTDNFKAVK--DPN 176 (186)
Q Consensus 154 ~~~~~~~~~~~A~~~~~~~~--~~~ 176 (186)
.+++.+|...|+... .|+
T Consensus 85 -----l~~~~~A~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 85 -----LGEFKKALLDLEKVKKLAPN 104 (476)
T ss_pred -----HHHHHHHHHHHHHhhhcCcC
Confidence 888888888887663 454
No 203
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=5.9e-06 Score=56.43 Aligned_cols=99 Identities=17% Similarity=0.221 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhc--------CcccH----------HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALEL--------NPTYM----------KALIRRAEAHEKLEHFEEAIADMKKILE 135 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~----------~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (186)
.++...|+-+++.|+|.+|...|..|+.. .|..+ ..+.+++.|+...|+|-++++.....+.
T Consensus 179 ~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~ 258 (329)
T KOG0545|consen 179 PVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILR 258 (329)
T ss_pred HHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHh
Confidence 67788999999999999999999998854 44443 4678999999999999999999999999
Q ss_pred cCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhcccCCC
Q 044796 136 FDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNT 177 (186)
Q Consensus 136 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 177 (186)
.+|.+..+++..+.+... .=...+|...|..++..+|
T Consensus 259 ~~~~nvKA~frRakAhaa-----~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 259 HHPGNVKAYFRRAKAHAA-----VWNEAEAKADLQKVLELDP 295 (329)
T ss_pred cCCchHHHHHHHHHHHHh-----hcCHHHHHHHHHHHHhcCh
Confidence 999999999999987776 5566678888887764443
No 204
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.33 E-value=1.7e-05 Score=58.24 Aligned_cols=121 Identities=16% Similarity=0.158 Sum_probs=92.1
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL 86 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 86 (186)
.++.++|++++-.|+|+.|+++|++.+.+.-. .......+...+.+|.+|.-.
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAie---------------------------lg~r~vEAQscYSLgNtytll 288 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE---------------------------LGNRTVEAQSCYSLGNTYTLL 288 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHH---------------------------hcchhHHHHHHHHhhhHHHHH
Confidence 46778999999999999999999998776433 011122347888999999999
Q ss_pred ccHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCC--ChHHHHHHHHHHHHH
Q 044796 87 GKFEESIKECTKALELNP------TYMKALIRRAEAHEKLEHFEEAIADMKKILEF----DPS--NNQAKRTILRKLKEM 154 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~l~~~~~~~ 154 (186)
.++++||.++.+-+.+.. ....+.+.+|.++-.+|..++|+.+.+..+++ +.. ...+..++......+
T Consensus 289 ~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~l 368 (639)
T KOG1130|consen 289 KEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILEL 368 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHh
Confidence 999999999999887633 24678899999999999999999888877664 222 234556666655553
No 205
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=4.5e-05 Score=53.55 Aligned_cols=147 Identities=20% Similarity=0.229 Sum_probs=110.3
Q ss_pred HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHH-HHHHHHHhh
Q 044796 8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICH-SNRGICFLK 85 (186)
Q Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~ 85 (186)
.-+..+......|++.+|...|..++...|.+.++...++.++ ..++.+.+...+...|.........- ...-..+.+
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 3455677888999999999999999999999999999999887 66777777777777666553332221 111122223
Q ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHH
Q 044796 86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS--NNQAKRTILRKLKEMG 155 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~ 155 (186)
.....+ +..+++.+..+|++..+-+.+|..+...|+.++|++.+-..++.+.. +..+...+-.++..+|
T Consensus 216 aa~~~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 216 AAATPE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HhcCCC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 322222 23456677789999999999999999999999999999999988654 5778888888777755
No 206
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.30 E-value=4.5e-05 Score=51.71 Aligned_cols=133 Identities=29% Similarity=0.402 Sum_probs=97.6
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHH-HH
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGI-CF 83 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~ 83 (186)
....+...|......+++..++..+..++...+... ......+. ++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~ 140 (291)
T COG0457 94 LAEALLNLGLLLEALGKYEEALELLEKALALDPDPD---------------------------------LAEALLALGAL 140 (291)
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc---------------------------------hHHHHHHHHHH
Confidence 345677778888888888888888888888777731 22333333 77
Q ss_pred hhhccHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHHHHHhh
Q 044796 84 LKLGKFEESIKECTKALELNP---TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS-NNQAKRTILRKLKEMGNSIL 159 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~ 159 (186)
...|+++.|+..+.+++..+| .........+..+...++++.|+..+.+++...|. ....+..++..+.. .
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 215 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-----L 215 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-----c
Confidence 888888888888888888766 35566666666677888888888888888888888 67778888877777 6
Q ss_pred ccccccchhhhhcccC
Q 044796 160 GRFGMSTDNFKAVKDP 175 (186)
Q Consensus 160 ~~~~~A~~~~~~~~~~ 175 (186)
+.++.|+..+..++..
T Consensus 216 ~~~~~a~~~~~~~~~~ 231 (291)
T COG0457 216 GKYEEALEYYEKALEL 231 (291)
T ss_pred ccHHHHHHHHHHHHhh
Confidence 6677777777666433
No 207
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.30 E-value=1.5e-05 Score=59.41 Aligned_cols=143 Identities=13% Similarity=-0.016 Sum_probs=86.2
Q ss_pred hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchh----HHHhhCCCcchhHHHHHHHHH
Q 044796 3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSAS----EKKEVAPAPEMAELRSICHSN 78 (186)
Q Consensus 3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 78 (186)
..-+..|...|.-.+++.+...|.+.+..||...|.+--.....-........+. +.+.+...|.+. .+|..
T Consensus 401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c----~~W~k 476 (677)
T KOG1915|consen 401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENC----YAWSK 476 (677)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhh----HHHHH
Confidence 3455666666666677777777777777777777765433222222223333322 333344444443 77777
Q ss_pred HHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHH--HHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796 79 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA--HEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK 150 (186)
Q Consensus 79 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 150 (186)
.|..-..+|+.+.|...|+-|+.....+..-+...+.+ -...|.++.|...|++.++..+... +|...+..
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisFA~f 549 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISFAKF 549 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhHHHH
Confidence 77777777777777777777777655444433333333 4466777777777777777777655 66666543
No 208
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=8.4e-06 Score=57.93 Aligned_cols=94 Identities=19% Similarity=0.254 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY----MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI 147 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 147 (186)
.+.-+-.-|+-|++.++|..|+.+|.++|.....+ ...|.++|-|...+|+|..|+....+++.++|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 45667788999999999999999999999876544 45788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccccccchhhh
Q 044796 148 LRKLKEMGNSILGRFGMSTDNFK 170 (186)
Q Consensus 148 ~~~~~~~~~~~~~~~~~A~~~~~ 170 (186)
+.|+.. ++++.+|..+.+
T Consensus 160 Akc~~e-----Le~~~~a~nw~e 177 (390)
T KOG0551|consen 160 AKCLLE-----LERFAEAVNWCE 177 (390)
T ss_pred hHHHHH-----HHHHHHHHHHHh
Confidence 999988 666555555443
No 209
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=2.2e-05 Score=56.15 Aligned_cols=156 Identities=15% Similarity=0.060 Sum_probs=98.9
Q ss_pred hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCc----hhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796 12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQS----ASEKKEVAPAPEMAELRSICHSNRGICFLKL 86 (186)
Q Consensus 12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 86 (186)
.+-..+..|++-+|...+++.++-.|.+.-++-..-... ..+.. ....+.+.......|-.+-..-.++-.+...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~ 188 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC 188 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence 445567788999999999999999998765544332222 22222 2222222221112222223344456667778
Q ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHHHHHhhccc
Q 044796 87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN----QAKRTILRKLKEMGNSILGRF 162 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~~~~ 162 (186)
|-|++|....++++++||.+.-+.+.++-++.-.|++.++.+...+--....... .-|...+.++.. -+.|
T Consensus 189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE-----~aey 263 (491)
T KOG2610|consen 189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE-----GAEY 263 (491)
T ss_pred ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc-----ccch
Confidence 8889999999999999998888888888888888999888887766543322110 012223333334 6788
Q ss_pred cccchhhhhc
Q 044796 163 GMSTDNFKAV 172 (186)
Q Consensus 163 ~~A~~~~~~~ 172 (186)
+.|.+.|.+-
T Consensus 264 e~aleIyD~e 273 (491)
T KOG2610|consen 264 EKALEIYDRE 273 (491)
T ss_pred hHHHHHHHHH
Confidence 8888888765
No 210
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.26 E-value=2.3e-06 Score=40.30 Aligned_cols=31 Identities=32% Similarity=0.514 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 044796 108 KALIRRAEAHEKLEHFEEAIADMKKILEFDP 138 (186)
Q Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 138 (186)
.+|+.+|.++..+|++++|+.+|+++++++|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3455666666666666666666666666665
No 211
>PRK10941 hypothetical protein; Provisional
Probab=98.26 E-value=2.9e-05 Score=54.73 Aligned_cols=77 Identities=12% Similarity=0.121 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL 148 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 148 (186)
......++-.++...++++.|+.+.+..+.+.|+++.-+..+|.++.++|.+..|...++..++..|+++.+..-..
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ 256 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRA 256 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 45777888899999999999999999999999999999999999999999999999999999999999998755443
No 212
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.25 E-value=7.7e-05 Score=49.31 Aligned_cols=69 Identities=20% Similarity=0.078 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 044796 71 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN 140 (186)
Q Consensus 71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 140 (186)
..+-+-..+|.+..++|.+++|+..++..... .-.+..-...|.++...|+.++|...|.+++..+++.
T Consensus 124 lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 124 LKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 34466677888888888888888777664432 1123345567888888888888888888888877443
No 213
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.25 E-value=3.9e-05 Score=63.37 Aligned_cols=163 Identities=17% Similarity=0.068 Sum_probs=109.2
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChh-----hhhccchhh-hhcCchhHHHhh----CCCcc--hhHHH
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPER-----AESASAPEA-KEGQSASEKKEV----APAPE--MAELR 72 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~~~~~~-~~~~~~~~~~~~----~~~~~--~~~~~ 72 (186)
.+.....+|..+...|++++|...+++++...|.... +...++... ..++...+...+ ..... .....
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~ 530 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYA 530 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHH
Confidence 4555666899999999999999999999986655332 223344333 334444333222 11111 11112
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----
Q 044796 73 SICHSNRGICFLKLGKFEESIKECTKALELNPT--------YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN---- 140 (186)
Q Consensus 73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---- 140 (186)
...+..+|.++...|++++|...+++++..... ....+..+|.++...|++++|...+.+++......
T Consensus 531 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~ 610 (903)
T PRK04841 531 LWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ 610 (903)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH
Confidence 356778899999999999999999999876221 22345678899999999999999999998864321
Q ss_pred -hHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796 141 -NQAKRTILRKLKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 141 -~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
..++..++.+... .|+++.|...+..+
T Consensus 611 ~~~~~~~la~~~~~-----~G~~~~A~~~l~~a 638 (903)
T PRK04841 611 QLQCLAMLAKISLA-----RGDLDNARRYLNRL 638 (903)
T ss_pred HHHHHHHHHHHHHH-----cCCHHHHHHHHHHH
Confidence 2233344544444 78888888877766
No 214
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.24 E-value=6.9e-05 Score=61.92 Aligned_cols=96 Identities=11% Similarity=0.079 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-------
Q 044796 73 SICHSNRGICFLKLGKFEESIKECTKALELNPT------YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS------- 139 (186)
Q Consensus 73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------- 139 (186)
..+...+|.++...|++++|...+.+++..... ...++..+|.++...|++++|...+++++.+...
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~ 570 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLP 570 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 356678899999999999999999999975332 1346678899999999999999999999886322
Q ss_pred -ChHHHHHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796 140 -NNQAKRTILRKLKEMGNSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 140 -~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~ 173 (186)
....+..++.++.. .|++++|...+..++
T Consensus 571 ~~~~~~~~la~~~~~-----~G~~~~A~~~~~~al 600 (903)
T PRK04841 571 MHEFLLRIRAQLLWE-----WARLDEAEQCARKGL 600 (903)
T ss_pred HHHHHHHHHHHHHHH-----hcCHHHHHHHHHHhH
Confidence 12233445555555 889999988887764
No 215
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=5.3e-05 Score=51.49 Aligned_cols=138 Identities=19% Similarity=0.162 Sum_probs=88.4
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL 86 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 86 (186)
+.+..-|+.+...++|..|-..|-++-+..-. .. ...+.+..|...+.||.+
T Consensus 35 dl~~~Aan~yklaK~w~~AG~aflkaA~~h~k--------------------------~~-skhDaat~YveA~~cykk- 86 (288)
T KOG1586|consen 35 ELYERAANMYKLAKNWSAAGDAFLKAADLHLK--------------------------AG-SKHDAATTYVEAANCYKK- 86 (288)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh--------------------------cC-CchhHHHHHHHHHHHhhc-
Confidence 33444445555666666666666666554332 11 111123666666777655
Q ss_pred ccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH--
Q 044796 87 GKFEESIKECTKALELNPTY------MKALIRRAEAHEKL-EHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS-- 157 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~-- 157 (186)
.+.++|+.++++++++..+- ...+..+|.+|..- .++++|+.+|+++-+.-.... ....--.|+...+..
T Consensus 87 ~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ee-s~ssANKC~lKvA~yaa 165 (288)
T KOG1586|consen 87 VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEE-SVSSANKCLLKVAQYAA 165 (288)
T ss_pred cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchh-hhhhHHHHHHHHHHHHH
Confidence 59999999999999986543 33455788888765 899999999999987654321 111112333334433
Q ss_pred hhccccccchhhhhcc
Q 044796 158 ILGRFGMSTDNFKAVK 173 (186)
Q Consensus 158 ~~~~~~~A~~~~~~~~ 173 (186)
.+++|..|++.|+++.
T Consensus 166 ~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVA 181 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4899999999998763
No 216
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.23 E-value=0.00018 Score=43.69 Aligned_cols=108 Identities=24% Similarity=0.356 Sum_probs=77.0
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL 86 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 86 (186)
......|...+..|-|++|...+.++++....-|.- ..-+....++-++..++..+..+
T Consensus 10 Y~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~e---------------------EaFDh~GFDA~chA~Ls~A~~~L 68 (144)
T PF12968_consen 10 YMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAE---------------------EAFDHDGFDAFCHAGLSGALAGL 68 (144)
T ss_dssp HHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TT---------------------S---HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChH---------------------hhcccccHHHHHHHHHHHHHHhh
Confidence 334445567778899999999999999876552210 01223344567788899999999
Q ss_pred ccHHHHHHHHHHHHhc-------Cccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796 87 GKFEESIKECTKALEL-------NPTY----MKALIRRAEAHEKLEHFEEAIADMKKILE 135 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~-------~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (186)
|+|++++...+++|.. +.+. ..+.+..|.++..+|+.++|+..|+.+-+
T Consensus 69 gry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 69 GRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp T-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 9999999888888854 3333 45667889999999999999999998865
No 217
>PLN03077 Protein ECB2; Provisional
Probab=98.22 E-value=3.4e-05 Score=63.40 Aligned_cols=101 Identities=12% Similarity=0.134 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChHHHHHH
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKALE--LNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS--NNQAKRTI 147 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 147 (186)
+...|..+...|...|+.++|+..|++..+ ..|+.. .+..+-.++.+.|..++|...|+...+..+- +...+..+
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~l 631 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHH
Confidence 346788888888889999999999998776 356544 3444445677888899999998888744322 24567777
Q ss_pred HHHHHHHHHHhhccccccchhhhhc-ccCCCC
Q 044796 148 LRKLKEMGNSILGRFGMSTDNFKAV-KDPNTG 178 (186)
Q Consensus 148 ~~~~~~~~~~~~~~~~~A~~~~~~~-~~~~~~ 178 (186)
...+.+ .|++++|.+.++.. +.|+..
T Consensus 632 v~~l~r-----~G~~~eA~~~~~~m~~~pd~~ 658 (857)
T PLN03077 632 VDLLGR-----AGKLTEAYNFINKMPITPDPA 658 (857)
T ss_pred HHHHHh-----CCCHHHHHHHHHHCCCCCCHH
Confidence 777777 88888888888765 455543
No 218
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=9.4e-05 Score=50.68 Aligned_cols=107 Identities=16% Similarity=0.052 Sum_probs=68.7
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK 85 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (186)
+..+..-+.++...++|++|..++.++.+-...+...+.+ +..+-..|.....
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA---------------------------AKayEqaamLake 83 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA---------------------------AKAYEQAAMLAKE 83 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH---------------------------HHHHHHHHHHHHH
Confidence 4556667788888999999999999999776665443332 1444455556666
Q ss_pred hccHHHHHHHHHHHHhcC-----cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 044796 86 LGKFEESIKECTKALELN-----PTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS 139 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~-----p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 139 (186)
+..+.++...++++.... |+-...-...+-=....-++++|+..|.+++.+-..
T Consensus 84 ~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~ 142 (308)
T KOG1585|consen 84 LSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEE 142 (308)
T ss_pred HHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence 677777777777777652 332222233333344556777777777777665433
No 219
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.20 E-value=4.3e-06 Score=39.35 Aligned_cols=33 Identities=33% Similarity=0.288 Sum_probs=30.6
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCC
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASV 38 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 38 (186)
++.++.+|.++...|++++|+.+|+++++++|+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 468999999999999999999999999999995
No 220
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.18 E-value=0.00038 Score=48.16 Aligned_cols=131 Identities=14% Similarity=0.130 Sum_probs=92.9
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK 85 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (186)
-.+...++..+++.+++++|+...++-+.+.|.+++ .. -+++.+|.+++.
T Consensus 71 ~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n--------------------------~d----Y~~YlkgLs~~~ 120 (254)
T COG4105 71 EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN--------------------------AD----YAYYLKGLSYFF 120 (254)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC--------------------------hh----HHHHHHHHHHhc
Confidence 356788999999999999999999999999999544 22 555556655543
Q ss_pred --------hccHHHHHHHHHHHHhcCcccH---------------HH--HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 044796 86 --------LGKFEESIKECTKALELNPTYM---------------KA--LIRRAEAHEKLEHFEEAIADMKKILEFDPSN 140 (186)
Q Consensus 86 --------~~~~~~A~~~~~~al~~~p~~~---------------~~--~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 140 (186)
..-..+|+..|+..+...|+.. .+ -...|..|.+.|.+-.|..-++.+++.-|+.
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t 200 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT 200 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence 2334678888888888888752 11 2234677888889999999999999887776
Q ss_pred hHH---HHHHHHHHHHHHHHhhccccccchhhhh
Q 044796 141 NQA---KRTILRKLKEMGNSILGRFGMSTDNFKA 171 (186)
Q Consensus 141 ~~~---~~~l~~~~~~~~~~~~~~~~~A~~~~~~ 171 (186)
..+ +..+..++.. +|-.++|...-+.
T Consensus 201 ~~~~eaL~~l~eaY~~-----lgl~~~a~~~~~v 229 (254)
T COG4105 201 SAVREALARLEEAYYA-----LGLTDEAKKTAKV 229 (254)
T ss_pred cchHHHHHHHHHHHHH-----hCChHHHHHHHHH
Confidence 544 4455555555 5555555554443
No 221
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=0.00017 Score=49.19 Aligned_cols=115 Identities=21% Similarity=0.163 Sum_probs=82.9
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
.+..+...++++ +..++.+|+.++++++++..+-... ..-+..+..+|.+|.
T Consensus 73 aat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf---------------------------~~aAk~~~~iaEiyE 124 (288)
T KOG1586|consen 73 AATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRF---------------------------TMAAKHHIEIAEIYE 124 (288)
T ss_pred HHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHH---------------------------HHHHhhhhhHHHHHh
Confidence 445555555555 4558888888888888887762111 112256678888887
Q ss_pred hh-ccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796 85 KL-GKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI 147 (186)
Q Consensus 85 ~~-~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 147 (186)
.. .++++||.+|+.+-+..... ...+...+..-..+++|.+|++.|++.....-+++...+..
T Consensus 125 sdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~ 194 (288)
T KOG1586|consen 125 SDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSA 194 (288)
T ss_pred hhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHH
Confidence 65 89999999999998764332 34667777778899999999999999998877776554443
No 222
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.17 E-value=2.1e-05 Score=59.33 Aligned_cols=106 Identities=25% Similarity=0.306 Sum_probs=89.9
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
+..+..+..|+..+..+.+..|+..|.+++...|+. ...+.+++.++
T Consensus 372 e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~---------------------------------~~~l~nraa~l 418 (758)
T KOG1310|consen 372 ENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDA---------------------------------IYLLENRAAAL 418 (758)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccch---------------------------------hHHHHhHHHHH
Confidence 456677888888888899999999999999998882 25666677776
Q ss_pred hhh---ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH
Q 044796 84 LKL---GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ 142 (186)
Q Consensus 84 ~~~---~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 142 (186)
++. |+.-.|+..+..+++++|....+|+.++.++..++++.+|+.+...+....|.+..
T Consensus 419 mkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 419 MKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhh
Confidence 663 46678999999999999999999999999999999999999999999888886553
No 223
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.14 E-value=0.0001 Score=55.16 Aligned_cols=141 Identities=13% Similarity=-0.009 Sum_probs=95.5
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchh----HHHhhCCCcchhHHHHHHHHHHHH
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSAS----EKKEVAPAPEMAELRSICHSNRGI 81 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~ 81 (186)
..|...|.--..+++++.|...|++||..+..+...|...+..- ....... ...++...|..+ ..|+..-.
T Consensus 74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd----qlWyKY~y 149 (677)
T KOG1915|consen 74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD----QLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH----HHHHHHHH
Confidence 34566666667889999999999999999999888888776543 3222222 333444455444 77777777
Q ss_pred HHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 82 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 82 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
+--.+|+...|.+.|++=+...|+ ..+|...-..-.+....+.|...|++.+-.+|+ ...|...+..-..
T Consensus 150 mEE~LgNi~gaRqiferW~~w~P~-eqaW~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k 219 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEWEPD-EQAWLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEK 219 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHh
Confidence 777788888888888888888774 445555555555666677777777777777765 3345555544333
No 224
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.11 E-value=7.8e-05 Score=56.99 Aligned_cols=116 Identities=21% Similarity=0.136 Sum_probs=88.4
Q ss_pred cccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Q 044796 19 EGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTK 98 (186)
Q Consensus 19 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 98 (186)
....+.|.+.+....+..|+ .+-..+..|.++...|+.++|+..+++
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~---------------------------------s~lfl~~~gR~~~~~g~~~~Ai~~~~~ 292 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPN---------------------------------SALFLFFEGRLERLKGNLEEAIESFER 292 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCC---------------------------------cHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 44667777888888888787 336777899999999999999999999
Q ss_pred HHhcCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH-HHHHHHHHHHHHHHhhccc-------cccc
Q 044796 99 ALELNPTY----MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA-KRTILRKLKEMGNSILGRF-------GMST 166 (186)
Q Consensus 99 al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~~~~~~~~~-------~~A~ 166 (186)
++...... .-.++.+|.++..++++++|..+|.+..+.+.-+... .+..|.++.. .++. ++|.
T Consensus 293 a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~-----l~~~~~~~~~~~~a~ 367 (468)
T PF10300_consen 293 AIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM-----LGREEEAKEHKKEAE 367 (468)
T ss_pred hccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh-----hccchhhhhhHHHHH
Confidence 88643332 3468899999999999999999999999976654443 3444556666 4444 7777
Q ss_pred hhhhhc
Q 044796 167 DNFKAV 172 (186)
Q Consensus 167 ~~~~~~ 172 (186)
+.|.++
T Consensus 368 ~l~~~v 373 (468)
T PF10300_consen 368 ELFRKV 373 (468)
T ss_pred HHHHHH
Confidence 777766
No 225
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.10 E-value=0.00011 Score=47.17 Aligned_cols=93 Identities=28% Similarity=0.362 Sum_probs=70.8
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCcc----------------------cHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 044796 75 CHSNRGICFLKLGKFEESIKECTKALELNPT----------------------YMKALIRRAEAHEKLEHFEEAIADMKK 132 (186)
Q Consensus 75 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~----------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (186)
.....|......++.+.++..+.+++.+... ...+...++..+...|++++|+..+.+
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3344455666677888899999998877321 134566778889999999999999999
Q ss_pred HHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796 133 ILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 133 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
++..+|.+-.++..+..++.. .|+...|++.|.+.
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~-----~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAA-----QGRRAEALRVYERY 122 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHH-----TT-HHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHH-----CcCHHHHHHHHHHH
Confidence 999999999999999999999 78888888888655
No 226
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.08 E-value=0.00027 Score=49.02 Aligned_cols=135 Identities=14% Similarity=0.134 Sum_probs=93.5
Q ss_pred HHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHh---hCCCcchhHHHHHHHHHHHHHHhhh
Q 044796 10 KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKE---VAPAPEMAELRSICHSNRGICFLKL 86 (186)
Q Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~a~~~~~~ 86 (186)
-.--.++.+..+++-|....++..+.+.+..-...+-+.+...........+ +.....-.+..+.....++.|++.+
T Consensus 141 Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~ 220 (299)
T KOG3081|consen 141 ALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQL 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHh
Confidence 3345678888999999999999888876643222222222211111112211 1111111223458889999999999
Q ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHH-HHHHHHHHHhcCCCChHHH
Q 044796 87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE-AIADMKKILEFDPSNNQAK 144 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~-A~~~~~~al~~~p~~~~~~ 144 (186)
|+|++|...++.++..++++|+.+.++-.+-..+|...+ -.+.+.+....+|+.+.+.
T Consensus 221 ~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred cCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHHH
Confidence 999999999999999999999999999999888887655 4567777778888887654
No 227
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.07 E-value=4.2e-05 Score=54.56 Aligned_cols=97 Identities=12% Similarity=-0.021 Sum_probs=80.3
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK-LEHFEEAIADMKKILEFDPSNNQAKRTILRKLK 152 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 152 (186)
-+|..+.....+.+..+.|...|.+|++..+....+|...|.+-+. .++.+.|...|+.+++..|.+...|......+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4677777888888889999999999997767778899999999666 567777999999999999999999999999998
Q ss_pred HHHHHhhccccccchhhhhcccC
Q 044796 153 EMGNSILGRFGMSTDNFKAVKDP 175 (186)
Q Consensus 153 ~~~~~~~~~~~~A~~~~~~~~~~ 175 (186)
. .++.+.|...|++++..
T Consensus 82 ~-----~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 82 K-----LNDINNARALFERAISS 99 (280)
T ss_dssp H-----TT-HHHHHHHHHHHCCT
T ss_pred H-----hCcHHHHHHHHHHHHHh
Confidence 8 78888889999988643
No 228
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.06 E-value=1.4e-05 Score=60.95 Aligned_cols=106 Identities=16% Similarity=0.166 Sum_probs=88.3
Q ss_pred HhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHH
Q 044796 13 GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEES 92 (186)
Q Consensus 13 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 92 (186)
|.-+...|+...|+.|+..|+...|... .....++|++..+-|-.-.|
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~--------------------------------~v~~v~la~~~~~~~~~~da 661 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQ--------------------------------DVPLVNLANLLIHYGLHLDA 661 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhh--------------------------------cccHHHHHHHHHHhhhhccH
Confidence 4444567788888888888888777621 14567788888888888899
Q ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796 93 IKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK 150 (186)
Q Consensus 93 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 150 (186)
-..+.+++.++...|-.++-+|.++..+.+.+.|++.|++|++++|+++.+...+-.+
T Consensus 662 ~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 662 TKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 9999999999988899999999999999999999999999999999999887766543
No 229
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=2.9e-05 Score=54.75 Aligned_cols=124 Identities=19% Similarity=0.221 Sum_probs=88.4
Q ss_pred HHhHhHHHHcccHHHHHHHHHHHHhccCCCh-h-hhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796 10 KLEGNKLFAEGKYEEALLQYEVALRVASVPE-R-AESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG 87 (186)
Q Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 87 (186)
+--+..+++.+.+.+|+......... |.-. . .....+..+..++.......++..|... .+....+.|-+.++.|
T Consensus 82 lY~AQSLY~A~i~ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en--~Ad~~in~gCllykeg 158 (459)
T KOG4340|consen 82 LYQAQSLYKACIYADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN--EADGQINLGCLLYKEG 158 (459)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC--ccchhccchheeeccc
Confidence 33456667777777777776554432 2111 1 1112223335566666666665555322 3477889999999999
Q ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796 88 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF 136 (186)
Q Consensus 88 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (186)
+++.|++-|+.+++...-+|..-++++.++++.|++..|+++....++.
T Consensus 159 qyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 159 QYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 9999999999999999889999999999999999999999987777654
No 230
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=98.03 E-value=0.00017 Score=54.25 Aligned_cols=135 Identities=17% Similarity=0.152 Sum_probs=92.2
Q ss_pred hHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhh---cCc-------hhHHHhhCCCc---c-----------hh
Q 044796 14 NKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKE---GQS-------ASEKKEVAPAP---E-----------MA 69 (186)
Q Consensus 14 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~---~-----------~~ 69 (186)
....+..+++.-++.-.+||+++|+.++++..++..... ... +.....+.... . ..
T Consensus 176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt 255 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDT 255 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcccc
Confidence 444788899999999999999999999999998864311 111 11111111110 0 00
Q ss_pred HHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCChHHHHH
Q 044796 70 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPT--YMKALIRRAEAHEKLEHFEEAIADMKKILEF-DPSNNQAKRT 146 (186)
Q Consensus 70 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~ 146 (186)
.....+...+|.|..+.|+.++|++.++..++.+|. +..++.++-.++..++.|.++...+.+.=++ -|+.....+.
T Consensus 256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YT 335 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYT 335 (539)
T ss_pred chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHH
Confidence 011345567888999999999999999999887764 4668888999999999999998888887433 2455555444
Q ss_pred HH
Q 044796 147 IL 148 (186)
Q Consensus 147 l~ 148 (186)
-+
T Consensus 336 aA 337 (539)
T PF04184_consen 336 AA 337 (539)
T ss_pred HH
Confidence 43
No 231
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=98.03 E-value=1.5e-05 Score=37.12 Aligned_cols=31 Identities=32% Similarity=0.464 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 044796 109 ALIRRAEAHEKLEHFEEAIADMKKILEFDPS 139 (186)
Q Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 139 (186)
+++.+|.++...|++++|+..|++++...|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566666666666666666666666666665
No 232
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.02 E-value=0.00026 Score=56.56 Aligned_cols=95 Identities=18% Similarity=0.175 Sum_probs=60.6
Q ss_pred hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHH
Q 044796 12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEE 91 (186)
Q Consensus 12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 91 (186)
--......++|.+|.....+.++..|+-+ .+....|..+.++|+.++
T Consensus 15 pi~d~ld~~qfkkal~~~~kllkk~Pn~~---------------------------------~a~vLkaLsl~r~gk~~e 61 (932)
T KOG2053|consen 15 PIYDLLDSSQFKKALAKLGKLLKKHPNAL---------------------------------YAKVLKALSLFRLGKGDE 61 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHCCCcH---------------------------------HHHHHHHHHHHHhcCchh
Confidence 34456788999999999999999999944 344445555555555555
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 044796 92 SIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS 139 (186)
Q Consensus 92 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 139 (186)
|..+++..-...+++...+--+-.||..+|+.++|...|++++..+|+
T Consensus 62 a~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 62 ALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 555555444445555555555555555555555555555555555555
No 233
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=98.01 E-value=0.0001 Score=43.07 Aligned_cols=65 Identities=23% Similarity=0.331 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHHHH
Q 044796 92 SIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN--NQAKRTILRKLKEMGN 156 (186)
Q Consensus 92 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~ 156 (186)
.+..+++.+..+|+++.+.+.+|..+...|++++|++.+..+++.+|+. ..+...+-.++..+|.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 4667889999999999999999999999999999999999999998875 7788888888888665
No 234
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=98.00 E-value=8.4e-05 Score=38.65 Aligned_cols=40 Identities=33% Similarity=0.354 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796 109 ALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL 148 (186)
Q Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 148 (186)
.++.+|..++++|+|+.|..+.+.+++++|+|.++.....
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 4566777777777777777777777777777776655444
No 235
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.99 E-value=0.00012 Score=53.02 Aligned_cols=164 Identities=18% Similarity=0.153 Sum_probs=117.3
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhh----cCchhHHH------hhCCCcchhHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKE----GQSASEKK------EVAPAPEMAELRS 73 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~----~~~~~~~~------~~~~~~~~~~~~~ 73 (186)
+++......|..+++..++++|+..+.+.+..-.+...-+..+|..... +..+.+.. ......+.....-
T Consensus 4 ~q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ 83 (518)
T KOG1941|consen 4 DQTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLL 83 (518)
T ss_pred chhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999998766655555555543311 11111111 1111122222234
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccH-----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH------
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYM-----KALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ------ 142 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------ 142 (186)
.++.+++..+....+|.+++.+.+..+......+ .++..+|.++..++.++++++.|+.|+.+..++.+
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 7888999999999999999999999998754433 57777999999999999999999999998665543
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796 143 AKRTILRKLKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 143 ~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
+...++..+.. +.+++.|.-+..++
T Consensus 164 vcv~Lgslf~~-----l~D~~Kal~f~~kA 188 (518)
T KOG1941|consen 164 VCVSLGSLFAQ-----LKDYEKALFFPCKA 188 (518)
T ss_pred hhhhHHHHHHH-----HHhhhHHhhhhHhH
Confidence 45556666555 88888888777665
No 236
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.98 E-value=1.2e-06 Score=62.27 Aligned_cols=90 Identities=23% Similarity=0.292 Sum_probs=77.2
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 044796 78 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS 157 (186)
Q Consensus 78 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 157 (186)
..+.-.+..|.+++|+..|..+++++|.....+..++.++..++....|++.+..+++++|+...-+-..+.+...
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl---- 194 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL---- 194 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHH----
Confidence 3455566789999999999999999999999999999999999999999999999999999998888777755555
Q ss_pred hhccccccchhhhhc
Q 044796 158 ILGRFGMSTDNFKAV 172 (186)
Q Consensus 158 ~~~~~~~A~~~~~~~ 172 (186)
+|.+++|...+..+
T Consensus 195 -lg~~e~aa~dl~~a 208 (377)
T KOG1308|consen 195 -LGNWEEAAHDLALA 208 (377)
T ss_pred -hhchHHHHHHHHHH
Confidence 66666666666555
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.93 E-value=0.00019 Score=54.88 Aligned_cols=102 Identities=20% Similarity=0.145 Sum_probs=80.7
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL 86 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 86 (186)
--++..|..+...|+.++|+..|++++....+.+ ....-+++.+|.++..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~-----------------------------Ql~~l~~~El~w~~~~~ 318 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWK-----------------------------QLHHLCYFELAWCHMFQ 318 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH-----------------------------hHHHHHHHHHHHHHHHH
Confidence 3467789999999999999999999985444411 12236789999999999
Q ss_pred ccHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHhcCH-------HHHHHHHHHHHhcC
Q 044796 87 GKFEESIKECTKALELNPTY-MKALIRRAEAHEKLEHF-------EEAIADMKKILEFD 137 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~-------~~A~~~~~~al~~~ 137 (186)
.+|++|..++.+.++.+.-. .-..|..|.|+...|+. ++|...|.++-.+-
T Consensus 319 ~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 319 HDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred chHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 99999999999999976543 33455668999999999 88888888886543
No 238
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.91 E-value=0.00027 Score=59.07 Aligned_cols=95 Identities=15% Similarity=0.078 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPT--YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL 151 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 151 (186)
..|..+|..++...+-+.|...+.+|++.-|. +.+.....|.+-++.|+.+.+...|+-.+.-.|.-.+.|.-+...-
T Consensus 1565 ~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~e 1644 (1710)
T KOG1070|consen 1565 KVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDME 1644 (1710)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHH
Confidence 77888888888888888888888888888776 6777777788888888888888888888888888888887777655
Q ss_pred HHHHHHhhccccccchhhhhcc
Q 044796 152 KEMGNSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 152 ~~~~~~~~~~~~~A~~~~~~~~ 173 (186)
.. .++.+.....|++++
T Consensus 1645 ik-----~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1645 IK-----HGDIKYVRDLFERVI 1661 (1710)
T ss_pred Hc-----cCCHHHHHHHHHHHH
Confidence 55 556666666666664
No 239
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.91 E-value=3.2e-05 Score=35.92 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=30.2
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCC
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASV 38 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 38 (186)
++++.+|.++...|++++|+..|+++++..|+
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 46899999999999999999999999999997
No 240
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.91 E-value=6.9e-05 Score=53.08 Aligned_cols=76 Identities=28% Similarity=0.217 Sum_probs=67.7
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR 149 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 149 (186)
..-...|.-..+.|+.++|...|+.|+.+.|++++++..+|.......+.-+|-.+|-+|+.++|.+.+++.+.++
T Consensus 117 ~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 117 ILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 3334455556678999999999999999999999999999999999999999999999999999999999887765
No 241
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.89 E-value=0.0001 Score=38.37 Aligned_cols=43 Identities=26% Similarity=0.384 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA 116 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 116 (186)
+.++.+|..+.+.|+|++|..+++.+++++|++..+......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 5678899999999999999999999999999999887665544
No 242
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.85 E-value=0.0012 Score=51.37 Aligned_cols=170 Identities=17% Similarity=0.083 Sum_probs=91.7
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCC----hhhhhccchhh-hhcCchhHHHhhC---CCcchhH--------
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVP----ERAESASAPEA-KEGQSASEKKEVA---PAPEMAE-------- 70 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~-------- 70 (186)
..|...|..|...|+.+.|...|+++....-.. ..+|...|..- ...+.+.+.+.+. ..|....
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 446667777777777777777777777654332 23444444221 2222222222211 1121100
Q ss_pred -------HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCh
Q 044796 71 -------LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD--PSNN 141 (186)
Q Consensus 71 -------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~ 141 (186)
.+..+|...+......|-++.....|++.+.+.--.|.+..+.|..+.....++++.+.|++.+.+. |.-.
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVY 547 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHH
Confidence 1234556666666666666666666666666665566666667776666666777777777766654 3334
Q ss_pred HHHHHHHHHHHHHHHHhhccccccchhhhhcccCCCC
Q 044796 142 QAKRTILRKLKEMGNSILGRFGMSTDNFKAVKDPNTG 178 (186)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 178 (186)
++|...-..... ...-.+.+.|...|+++++..|+
T Consensus 548 diW~tYLtkfi~--rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 548 DIWNTYLTKFIK--RYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHhcCCH
Confidence 444433322211 11123556666677777665543
No 243
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.84 E-value=0.0012 Score=45.15 Aligned_cols=77 Identities=12% Similarity=0.129 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhhhccH-------HHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 044796 72 RSICHSNRGICFLKLGKF-------EESIKECTKALELNP------TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDP 138 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~-------~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 138 (186)
.+..+..+|.+|..+|+. ..|+..|.++++... +...+.+.+|.+..++|++++|.++|.+++....
T Consensus 117 ~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 117 KAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 457788888999888874 456666666665432 2357889999999999999999999999998654
Q ss_pred CCh-HHHHHHH
Q 044796 139 SNN-QAKRTIL 148 (186)
Q Consensus 139 ~~~-~~~~~l~ 148 (186)
.+. .....++
T Consensus 197 ~s~~~~l~~~A 207 (214)
T PF09986_consen 197 ASKEPKLKDMA 207 (214)
T ss_pred CCCcHHHHHHH
Confidence 433 2344444
No 244
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.75 E-value=0.0021 Score=47.25 Aligned_cols=145 Identities=15% Similarity=0.085 Sum_probs=107.8
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
+.+..+...+....+.|.++.|...+.++...++..... .+.+....+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------------------------~~~v~~e~akll 194 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------------------------LPRVFLEYAKLL 194 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------------------------CcchHHHHHHHH
Confidence 456788999999999999999999999999877541110 226677788888
Q ss_pred hhhccHHHHHHHHHHHHhc---Cc-------------------------------ccHHHHHHHHHHHHHh------cCH
Q 044796 84 LKLGKFEESIKECTKALEL---NP-------------------------------TYMKALIRRAEAHEKL------EHF 123 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~---~p-------------------------------~~~~~~~~lg~~~~~~------g~~ 123 (186)
...|+..+|+..++..+.. .+ ....++..+|...... +..
T Consensus 195 w~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~ 274 (352)
T PF02259_consen 195 WAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESS 274 (352)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccH
Confidence 8889989998888887771 00 1135677778777777 889
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhh------------ccccccchhhhhcccCCC
Q 044796 124 EEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSIL------------GRFGMSTDNFKAVKDPNT 177 (186)
Q Consensus 124 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~------------~~~~~A~~~~~~~~~~~~ 177 (186)
++++..|..+++++|+...+|..+|.....+-.... .-...|+..|-+++..++
T Consensus 275 ~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~ 340 (352)
T PF02259_consen 275 DEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGS 340 (352)
T ss_pred HHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999987766544321 112356777766654433
No 245
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.74 E-value=8.7e-05 Score=35.37 Aligned_cols=29 Identities=34% Similarity=0.429 Sum_probs=24.5
Q ss_pred HHHHhHhHHHHcccHHHHHHHHHHHHhcc
Q 044796 8 EAKLEGNKLFAEGKYEEALLQYEVALRVA 36 (186)
Q Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 36 (186)
++..+|.++...|+|++|+++|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 47889999999999999999999966544
No 246
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.74 E-value=7e-05 Score=35.72 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHH
Q 044796 110 LIRRAEAHEKLEHFEEAIADMKKI 133 (186)
Q Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~a 133 (186)
+..+|.++..+|++++|+.+|+++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344555555555555555555553
No 247
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.73 E-value=8e-05 Score=33.88 Aligned_cols=31 Identities=39% Similarity=0.532 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 044796 109 ALIRRAEAHEKLEHFEEAIADMKKILEFDPS 139 (186)
Q Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 139 (186)
++..+|.++...|++++|...|.++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555566666666666666666666655553
No 248
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.72 E-value=0.0019 Score=38.88 Aligned_cols=95 Identities=23% Similarity=0.293 Sum_probs=68.9
Q ss_pred hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh-----
Q 044796 12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL----- 86 (186)
Q Consensus 12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----- 86 (186)
++..++..|+.-+|++..+..+...+.+...| ......|.++..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~------------------------------~lh~~QG~if~~lA~~te 51 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW------------------------------LLHRLQGTIFYKLAKKTE 51 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchH------------------------------HHHHHHhHHHHHHHHhcc
Confidence 46788999999999999999999998855433 2222233333221
Q ss_pred ------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796 87 ------GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF 136 (186)
Q Consensus 87 ------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (186)
--.-.+++++.++..+.|..+..++.+|.-+-....|++++.-.++++.+
T Consensus 52 n~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 52 NPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred CchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 12346788888999998888888888887777777788888877777765
No 249
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.72 E-value=0.0011 Score=50.04 Aligned_cols=76 Identities=18% Similarity=0.102 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH-FEEAIADMKKILEFDPSNNQAKRTILR 149 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~l~~ 149 (186)
..|........+.+.+.+--..|.+++..+|+++..|...|.-.+..+. .+.|...|.++++.+|+++..|...-+
T Consensus 106 ~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfr 182 (568)
T KOG2396|consen 106 KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFR 182 (568)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 7777777777777779999999999999999999999999988887776 999999999999999999998876654
No 250
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.70 E-value=0.00025 Score=50.41 Aligned_cols=80 Identities=26% Similarity=0.232 Sum_probs=65.6
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
+.|..-...|......|+.++|...|+-|+.+.|.++ .++...|...
T Consensus 114 kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p---------------------------------~~L~e~G~f~ 160 (472)
T KOG3824|consen 114 KEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNP---------------------------------QILIEMGQFR 160 (472)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCH---------------------------------HHHHHHhHHH
Confidence 4555666777788899999999999999999999944 6777777777
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 044796 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEA 116 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 116 (186)
...++.-+|-++|-+|+.++|.+.+++.+.+..
T Consensus 161 E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 161 EMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 777788888999999999999988888776543
No 251
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.68 E-value=0.004 Score=41.44 Aligned_cols=96 Identities=10% Similarity=0.042 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK 150 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 150 (186)
..-..+|..+...+++++|+..++.++....+. +.+-.++|.+...+|.+++|+..+.....-.= .+..-...|.+
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDi 168 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhH
Confidence 445567888899999999999999999643322 44677899999999999999998876543110 12334556777
Q ss_pred HHHHHHHhhccccccchhhhhcccC
Q 044796 151 LKEMGNSILGRFGMSTDNFKAVKDP 175 (186)
Q Consensus 151 ~~~~~~~~~~~~~~A~~~~~~~~~~ 175 (186)
+.. .|+-++|+..|++++..
T Consensus 169 ll~-----kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 169 LLA-----KGDKQEARAAYEKALES 188 (207)
T ss_pred HHH-----cCchHHHHHHHHHHHHc
Confidence 777 89999999999998644
No 252
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.64 E-value=0.0059 Score=39.45 Aligned_cols=108 Identities=12% Similarity=0.030 Sum_probs=84.3
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
....+..........++.+++...+...-.+.|. .+ ..-..-|..+.
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~--------------------------~~-------e~~~~~~~l~i 55 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE--------------------------FP-------ELDLFDGWLHI 55 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC--------------------------ch-------HHHHHHHHHHH
Confidence 4566778888888899999999999998889999 22 66677889999
Q ss_pred hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHH-HHhcCCCChHHHHHHH
Q 044796 85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK-ILEFDPSNNQAKRTIL 148 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l~ 148 (186)
..|+|.+|+..++.+....|..+.+--.++.|++.+|+.+ .+.+-. +++.. .++.+.....
T Consensus 56 ~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~--Wr~~A~evle~~-~d~~a~~Lv~ 117 (160)
T PF09613_consen 56 VRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS--WRRYADEVLESG-ADPDARALVR 117 (160)
T ss_pred HhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH--HHHHHHHHHhcC-CChHHHHHHH
Confidence 9999999999999999999999988899999999999875 333333 44433 3555544333
No 253
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.63 E-value=0.0024 Score=41.19 Aligned_cols=84 Identities=15% Similarity=0.099 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
..+.....+-...++.+++...+...--+.|..+.+-..-|.++...|++.+|+..|+.+....|..+-+.-.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 56667777778888999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHH
Q 044796 154 MGNS 157 (186)
Q Consensus 154 ~~~~ 157 (186)
+++.
T Consensus 91 ~~D~ 94 (160)
T PF09613_consen 91 LGDP 94 (160)
T ss_pred cCCh
Confidence 6554
No 254
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.61 E-value=0.00039 Score=55.55 Aligned_cols=89 Identities=12% Similarity=0.240 Sum_probs=80.8
Q ss_pred hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccc
Q 044796 85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGM 164 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (186)
..++|.+|+..+.+.++..|+.+.+....|.++.++|+.++|..+++..-...+++......+..++.. ++++++
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-----~~~~d~ 95 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD-----LGKLDE 95 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH-----HhhhhH
Confidence 457899999999999999999999999999999999999999988888888888899999999999999 999999
Q ss_pred cchhhhhcccCCCC
Q 044796 165 STDNFKAVKDPNTG 178 (186)
Q Consensus 165 A~~~~~~~~~~~~~ 178 (186)
|...|+++....|+
T Consensus 96 ~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 96 AVHLYERANQKYPS 109 (932)
T ss_pred HHHHHHHHHhhCCc
Confidence 99999999644443
No 255
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.59 E-value=0.00013 Score=33.15 Aligned_cols=32 Identities=41% Similarity=0.667 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcc
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPT 105 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 105 (186)
.++..+|.++..++++++|+.+++++++.+|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 57889999999999999999999999998885
No 256
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.53 E-value=0.00049 Score=47.90 Aligned_cols=98 Identities=20% Similarity=0.207 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhc----Cc--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHH
Q 044796 71 LRSICHSNRGICFLKLGKFEESIKECTKALEL----NP--TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAK 144 (186)
Q Consensus 71 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 144 (186)
..+.....+|.+.++.|+.+.|..+|+++-+. +. ....++.+.+.++...+++.+|...|.+.+..||.++.+.
T Consensus 210 ~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~ 289 (366)
T KOG2796|consen 210 QEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVAN 289 (366)
T ss_pred ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhh
Confidence 34577888999999999999999999955433 21 2345677788888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796 145 RTILRKLKEMGNSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~~~A~~~~~~~~ 173 (186)
++.+.|+.- .|+...|++..+.++
T Consensus 290 NnKALcllY-----lg~l~DAiK~~e~~~ 313 (366)
T KOG2796|consen 290 NNKALCLLY-----LGKLKDALKQLEAMV 313 (366)
T ss_pred chHHHHHHH-----HHHHHHHHHHHHHHh
Confidence 999977777 888888888888775
No 257
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.50 E-value=0.00029 Score=47.94 Aligned_cols=61 Identities=30% Similarity=0.468 Sum_probs=56.2
Q ss_pred HHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 044796 81 ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN 141 (186)
Q Consensus 81 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 141 (186)
......++.+.|.+.+.+++...|.+...|+++|....+.|+++.|...|++.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3455678999999999999999999999999999999999999999999999999999874
No 258
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.0042 Score=48.48 Aligned_cols=102 Identities=18% Similarity=0.193 Sum_probs=85.6
Q ss_pred HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796 8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG 87 (186)
Q Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 87 (186)
.+++.|-.+++.++|..+++.|...+..-|.+.. .. .-+.....++.||..+.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~--------------------------~~-~FaK~qR~l~~CYL~L~ 408 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNY--------------------------SD-RFAKIQRALQVCYLKLE 408 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhh--------------------------hh-HHHHHHHHHHHHHhhHH
Confidence 4667788889999999999999999998887332 11 12477888999999999
Q ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796 88 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF 136 (186)
Q Consensus 88 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (186)
+.+.|++.+++|-+.+|.++-.-...-.+....|..++|+.+.......
T Consensus 409 QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 409 QLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence 9999999999999999999888888888888889999999988877654
No 259
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.46 E-value=0.0049 Score=48.17 Aligned_cols=165 Identities=15% Similarity=0.049 Sum_probs=102.5
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChh-h------------------hhccchhh-hhcCchhHHHhhC
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPER-A------------------ESASAPEA-KEGQSASEKKEVA 63 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~------------------~~~~~~~~-~~~~~~~~~~~~~ 63 (186)
+.+..|..-|..-....+++.|.++.++|... |..+. . |..++.+. ..+..+.......
T Consensus 423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 423 DLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 34678888888888999999999999999875 33322 1 11111111 1122222222222
Q ss_pred CCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc--ccHHHHHH---HHHHHHHhcCHHHHHHHHHHHHhcCC
Q 044796 64 PAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNP--TYMKALIR---RAEAHEKLEHFEEAIADMKKILEFDP 138 (186)
Q Consensus 64 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~---lg~~~~~~g~~~~A~~~~~~al~~~p 138 (186)
......-..|.+-.+.|..+..-.-|+++.+.|++.+.+.+ .-.+.|.. ....-+.--..+.|...|++|++..|
T Consensus 502 riidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 502 RIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP 581 (835)
T ss_pred HHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 22222223457788888888888889999999999998854 33444443 33444455578999999999999888
Q ss_pred CChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796 139 SNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 139 ~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
. ..-..+-..+..+-.. -|--..|+..|+++
T Consensus 582 p--~~aKtiyLlYA~lEEe-~GLar~amsiyera 612 (835)
T KOG2047|consen 582 P--EHAKTIYLLYAKLEEE-HGLARHAMSIYERA 612 (835)
T ss_pred H--HHHHHHHHHHHHHHHH-hhHHHHHHHHHHHH
Confidence 3 3222222233333333 36667788888876
No 260
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.45 E-value=0.0022 Score=53.94 Aligned_cols=162 Identities=17% Similarity=-0.032 Sum_probs=116.8
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHh-ccCCCh----hhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHH
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALR-VASVPE----RAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNR 79 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (186)
+-.|.+.---++..++.++|.+..++||. +++... ..|.++-.+. .-+..+...+.++...++.. ....+..+
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd-~~~V~~~L 1536 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCD-AYTVHLKL 1536 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcc-hHHHHHHH
Confidence 34455555566788999999999999986 444433 3444443333 22334444444443333221 12567778
Q ss_pred HHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHHHHH
Q 044796 80 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS--NNQAKRTILRKLKEMGNS 157 (186)
Q Consensus 80 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~ 157 (186)
..+|...+++++|.+.++.-++...+....|..+|..+++..+-+.|...+.+|++.-|. ..+.....++....
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk---- 1612 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK---- 1612 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh----
Confidence 889999999999999999999988888999999999999999999999999999999998 44555555555555
Q ss_pred hhccccccchhhhhcc
Q 044796 158 ILGRFGMSTDNFKAVK 173 (186)
Q Consensus 158 ~~~~~~~A~~~~~~~~ 173 (186)
.|+-+.+...|+-.+
T Consensus 1613 -~GDaeRGRtlfEgll 1627 (1710)
T KOG1070|consen 1613 -YGDAERGRTLFEGLL 1627 (1710)
T ss_pred -cCCchhhHHHHHHHH
Confidence 777777777887554
No 261
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00029 Score=50.70 Aligned_cols=137 Identities=28% Similarity=0.338 Sum_probs=103.4
Q ss_pred hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796 3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC 82 (186)
Q Consensus 3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 82 (186)
++..+...+.|+..++.+++..|..-|.+++..-...+. ........ ..+...........+++.+
T Consensus 219 ~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~-------~~~~e~~~-------~~~~~~~~r~~~~~n~~~~ 284 (372)
T KOG0546|consen 219 LEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSR-------DREKEQEN-------RIPPLRELRFSIRRNLAAV 284 (372)
T ss_pred hhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhccccc-------cccccccc-------ccccccccccccccchHHh
Confidence 455667778899999999999999999998875332000 00000000 0122222234566778899
Q ss_pred HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
-++.+.+..|+.....++..++....+++.++..+..+.++++|++.+..+....|++..+...+..+-..
T Consensus 285 ~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 285 GLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred cccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999887776654433
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.0036 Score=44.33 Aligned_cols=92 Identities=21% Similarity=0.218 Sum_probs=66.7
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHH-------------------------
Q 044796 76 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADM------------------------- 130 (186)
Q Consensus 76 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~------------------------- 130 (186)
-...+.-....|++.+|...+..++...|.+..+...++.|+...|+.+.|...+
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA 216 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence 3445556666777777777777777777777777777777777777776555433
Q ss_pred ---------HHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796 131 ---------KKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 131 ---------~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
.+.+..+|++.++.+.++..+.. .|+.+.|.+.+-..
T Consensus 217 a~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~-----~g~~e~Ale~Ll~~ 262 (304)
T COG3118 217 AATPEIQDLQRRLAADPDDVEAALALADQLHL-----VGRNEAALEHLLAL 262 (304)
T ss_pred hcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHH-----cCCHHHHHHHHHHH
Confidence 33334579999999999988888 88888888877544
No 263
>PRK10941 hypothetical protein; Provisional
Probab=97.44 E-value=0.003 Score=44.72 Aligned_cols=76 Identities=18% Similarity=0.135 Sum_probs=65.3
Q ss_pred HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796 8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG 87 (186)
Q Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 87 (186)
.+.++=.++.+.++++.|+.+.+..+.+.|++ +.-+..+|.+|.++|
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d---------------------------------p~e~RDRGll~~qL~ 229 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPED---------------------------------PYEIRDRGLIYAQLD 229 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC---------------------------------HHHHHHHHHHHHHcC
Confidence 44556678899999999999999999999993 367788999999999
Q ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 044796 88 KFEESIKECTKALELNPTYMKALIRRAEA 116 (186)
Q Consensus 88 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 116 (186)
.+..|...++..++..|+++.+-.....+
T Consensus 230 c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 230 CEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred CcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 99999999999999999998876554443
No 264
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.44 E-value=0.0038 Score=46.36 Aligned_cols=110 Identities=20% Similarity=0.355 Sum_probs=81.1
Q ss_pred HHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccH
Q 044796 10 KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKF 89 (186)
Q Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (186)
..-|...+++++|..|..-|..+|++..+-...- .-. .....+.....+.+--.+..||+.+++.
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~----k~~-----------~~~~~di~~vaSfIetklv~CYL~~rkp 244 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALS----KPF-----------KASAEDISSVASFIETKLVTCYLRMRKP 244 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhcc----CCC-----------CCChhhHHHHHHHHHHHHHHhhhhcCCC
Confidence 3445677888999999999999988765521100 000 0001112222345566789999999999
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 044796 90 EESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKIL 134 (186)
Q Consensus 90 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (186)
+.|+....+.+..+|.++.-+.+.|.|+..+.+|.+|-+.+--+.
T Consensus 245 dlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 245 DLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred chHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988766554
No 265
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.42 E-value=0.00023 Score=53.52 Aligned_cols=97 Identities=18% Similarity=0.109 Sum_probs=71.3
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHh-ccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALR-VASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK 85 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (186)
-.+.++|-++++.|.|.-+..+|.+|++ ...+ ...| ... .-...+... .+-.+.++.|..+..
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~q-----L~~g--~~~----~~~~tls~n-----ks~eilYNcG~~~Lh 347 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQ-----LRNG--LKP----AKTFTLSQN-----KSMEILYNCGLLYLH 347 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHH-----Hhcc--CCC----Ccceehhcc-----cchhhHHhhhHHHHh
Confidence 3467899999999999999999999997 2111 0001 000 000000001 133788999999999
Q ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q 044796 86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEK 119 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 119 (186)
.|+.-.|.++|.+++...-.+|..|.+++.|+..
T Consensus 348 ~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 348 SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999998764
No 266
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.41 E-value=0.0087 Score=39.75 Aligned_cols=103 Identities=18% Similarity=0.042 Sum_probs=66.4
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
.-..+..+|.-+.+.|+.+.|+++|.++........ ...+++..+-.+..
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~------------------------------~~id~~l~~irv~i 84 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG------------------------------HKIDMCLNVIRVAI 84 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH------------------------------HHHHHHHHHHHHHH
Confidence 345677788888888888888888888666543311 12366666777777
Q ss_pred hhccHHHHHHHHHHHHhcCc--ccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796 85 KLGKFEESIKECTKALELNP--TYM----KALIRRAEAHEKLEHFEEAIADMKKILEFD 137 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p--~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (186)
..+++..+..+..++-..-. .+. ......|..+...++|..|...|-.+..-.
T Consensus 85 ~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 85 FFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 77788777777777665422 122 123334666777788888887777765433
No 267
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=97.40 E-value=0.0038 Score=43.76 Aligned_cols=77 Identities=19% Similarity=0.211 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL 148 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 148 (186)
......++=..+...++++.|..+.++.+..+|.++.-+...|.+|.++|.+..|+..+...++..|+++.+-....
T Consensus 180 l~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~ 256 (269)
T COG2912 180 LSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA 256 (269)
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence 34566667778888999999999999999999999999999999999999999999999999999999987755444
No 268
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.33 E-value=0.0066 Score=37.95 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhh---ccHHHHHHHHHHHHh-cCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796 74 ICHSNRGICFLKL---GKFEESIKECTKALE-LNPTY-MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL 148 (186)
Q Consensus 74 ~~~~~~a~~~~~~---~~~~~A~~~~~~al~-~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 148 (186)
...+++|.+.... .+..+.+.+++..++ ..|.. -+..+.++..++++++|+.++.+.+..++..|+|.++....-
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~ 112 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKE 112 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 4555666666543 345677888888886 44432 456777888888888888888888888888888888766555
Q ss_pred HHHHH
Q 044796 149 RKLKE 153 (186)
Q Consensus 149 ~~~~~ 153 (186)
.+...
T Consensus 113 ~ied~ 117 (149)
T KOG3364|consen 113 TIEDK 117 (149)
T ss_pred HHHHH
Confidence 44433
No 269
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.32 E-value=0.009 Score=45.38 Aligned_cols=106 Identities=13% Similarity=0.093 Sum_probs=77.9
Q ss_pred HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796 8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG 87 (186)
Q Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 87 (186)
.-..+|.|..+.|+.++|++.++..++.+|... ...+..++..++..++
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~-------------------------------~l~IrenLie~LLelq 309 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD-------------------------------NLNIRENLIEALLELQ 309 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc-------------------------------hhhHHHHHHHHHHhcC
Confidence 446789999999999999999999999888611 2267888899999999
Q ss_pred cHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHH-hcC---------------HHHHHHHHHHHHhcCCCChHHH
Q 044796 88 KFEESIKECTKALEL-NPTYMKALIRRAEAHEK-LEH---------------FEEAIADMKKILEFDPSNNQAK 144 (186)
Q Consensus 88 ~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~ 144 (186)
.|.++...+.+-=.+ -|....+.|..+.+..+ .++ -..|++.+.+|++.+|..+...
T Consensus 310 ~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 310 AYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred CHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 999998877775332 24556666665554322 222 1347889999999999877543
No 270
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=97.32 E-value=0.006 Score=34.28 Aligned_cols=69 Identities=22% Similarity=0.281 Sum_probs=55.7
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
..+....+.|.-++...+.++|+..+.++++..++.++ ...++-.+..+|
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~------------------------------rf~~lG~l~qA~ 53 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRED------------------------------RFRVLGYLIQAH 53 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHH------------------------------HHHHHHHHHHHH
Confidence 45777889999999999999999999999998888332 335666677889
Q ss_pred hhhccHHHHHHHHHHHHhc
Q 044796 84 LKLGKFEESIKECTKALEL 102 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~ 102 (186)
...|+|.+.+.+.-.=+.+
T Consensus 54 ~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 54 MEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999998877665543
No 271
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.28 E-value=0.02 Score=42.48 Aligned_cols=133 Identities=17% Similarity=0.062 Sum_probs=71.8
Q ss_pred HHHHHHHhHhHHHH---cccHHHHHHHHHH-HHhccCCChhhhhccchhhhhc-------Cc-------hhHHHhhCCCc
Q 044796 5 EANEAKLEGNKLFA---EGKYEEALLQYEV-ALRVASVPERAESASAPEAKEG-------QS-------ASEKKEVAPAP 66 (186)
Q Consensus 5 ~a~~~~~~g~~~~~---~~~~~~A~~~~~~-al~~~p~~~~~~~~~~~~~~~~-------~~-------~~~~~~~~~~~ 66 (186)
.....+..|..+.+ .|+.++|+..+.. .....+.+++.+..+|.+++.. +. ..+.+.+...+
T Consensus 178 ~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~ 257 (374)
T PF13281_consen 178 QHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP 257 (374)
T ss_pred chHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence 34556678888888 9999999999999 4556667777777777665321 11 22223333333
Q ss_pred chhHHHHHHHHHHHHHHhhhcc-HHHHHHH------HHHHH-hc----CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 044796 67 EMAELRSICHSNRGICFLKLGK-FEESIKE------CTKAL-EL----NPTYMKALIRRAEAHEKLEHFEEAIADMKKIL 134 (186)
Q Consensus 67 ~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~------~~~al-~~----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (186)
.. ..-.+.+.+....|. ++...+. +...+ +. .-.+-..+-.++.+....|++++|...+++++
T Consensus 258 ~~-----Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~ 332 (374)
T PF13281_consen 258 DY-----YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAF 332 (374)
T ss_pred cc-----cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 21 122333444444443 1111111 11111 11 11122233345566667788888888888888
Q ss_pred hcCCCChH
Q 044796 135 EFDPSNNQ 142 (186)
Q Consensus 135 ~~~p~~~~ 142 (186)
.+.|....
T Consensus 333 ~l~~~~W~ 340 (374)
T PF13281_consen 333 KLKPPAWE 340 (374)
T ss_pred hcCCcchh
Confidence 77766443
No 272
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.28 E-value=0.007 Score=43.85 Aligned_cols=117 Identities=9% Similarity=-0.019 Sum_probs=66.2
Q ss_pred hHHHHcccHHHHHHHHHHHHhc-cCCChhhhhccch---hh-----hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 14 NKLFAEGKYEEALLQYEVALRV-ASVPERAESASAP---EA-----KEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 14 ~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~---~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
..++..|+...-...+++++-. +|+.|-.-+.-|. .. ....++.+.+++..++... ++....+.++.
T Consensus 145 ~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~----Wa~Ha~aHVle 220 (491)
T KOG2610|consen 145 DAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDC----WASHAKAHVLE 220 (491)
T ss_pred hHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcch----HHHHHHHHHHH
Confidence 3455666666677777776665 5554322222221 11 1122344445555554333 56666677777
Q ss_pred hhccHHHHHHHHHHHHhcCcc-c---HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 044796 85 KLGKFEESIKECTKALELNPT-Y---MKALIRRAEAHEKLEHFEEAIADMKKIL 134 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~-~---~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (186)
..|++.++.++..+.-..-.. . .--|..-+.++..-+.|+.|+..|.+-+
T Consensus 221 m~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 221 MNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 778888887777664432111 1 1224456777887888888888887655
No 273
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.28 E-value=0.0073 Score=47.46 Aligned_cols=138 Identities=17% Similarity=0.044 Sum_probs=73.2
Q ss_pred HHHHHHHhHhHHHHc-----ccHHHHHHHHHHHHhc-----cCCChhhhhccchhhhhcC------chhHHHhhCCCcch
Q 044796 5 EANEAKLEGNKLFAE-----GKYEEALLQYEVALRV-----ASVPERAESASAPEAKEGQ------SASEKKEVAPAPEM 68 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~-----~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~ 68 (186)
.+.+...+|.+++.. ++.+.|+.+|+.+... .-.++.+.+.+|.++..+. ...+...+......
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 455667778777754 5899999999988771 0113344555555443221 11111111111110
Q ss_pred hHHHHHHHHHHHHHHhhhc---cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh----cCHHHHHHHHHHHHhcCCCCh
Q 044796 69 AELRSICHSNRGICFLKLG---KFEESIKECTKALELNPTYMKALIRRAEAHEKL----EHFEEAIADMKKILEFDPSNN 141 (186)
Q Consensus 69 ~~~~~~~~~~~a~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~p~~~ 141 (186)
..+.+.+.+|.++..-. +...|..+|..|... .++.+.+++|.|+..- .+...|..++.++.+.+ ++
T Consensus 323 --g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~ 396 (552)
T KOG1550|consen 323 --GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NP 396 (552)
T ss_pred --CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--Ch
Confidence 12355666666665543 455666666666653 3555666666665432 25566666666666655 34
Q ss_pred HHHHHHH
Q 044796 142 QAKRTIL 148 (186)
Q Consensus 142 ~~~~~l~ 148 (186)
.+...++
T Consensus 397 ~A~~~~~ 403 (552)
T KOG1550|consen 397 SAAYLLG 403 (552)
T ss_pred hhHHHHH
Confidence 4444444
No 274
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.25 E-value=0.01 Score=37.16 Aligned_cols=43 Identities=21% Similarity=0.327 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHH
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRA 114 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 114 (186)
+-.+.+.+|..+.+.++|++++.+++..++..|++.++.-..-
T Consensus 70 rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk~ 112 (149)
T KOG3364|consen 70 RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELKE 112 (149)
T ss_pred chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 4578888999999999999999999999999999988765443
No 275
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.25 E-value=0.02 Score=41.02 Aligned_cols=112 Identities=21% Similarity=0.225 Sum_probs=77.7
Q ss_pred HHHcccHHHHHHHHHHHHhcc-CCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc-cHHHHH
Q 044796 16 LFAEGKYEEALLQYEVALRVA-SVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG-KFEESI 93 (186)
Q Consensus 16 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~A~ 93 (186)
....|+++.|..++.++-... .. .|......+..+++.|......+ +++.|+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~--------------------------~~~~~~~La~~~yn~G~~l~~~~~~~~~a~ 56 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSL--------------------------DPDMAEELARVCYNIGKSLLSKKDKYEEAV 56 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcC--------------------------CcHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 467899999999999987766 33 33344445688889999998988 999999
Q ss_pred HHHHHHHhc----Ccc----------cHHHHHHHHHHHHHhcCHH---HHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 94 KECTKALEL----NPT----------YMKALIRRAEAHEKLEHFE---EAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 94 ~~~~~al~~----~p~----------~~~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
.+++++.++ .+. ...++..++.++...+.++ +|....+.+-.-.|+.+......-.++..
T Consensus 57 ~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~ 133 (278)
T PF08631_consen 57 KWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLK 133 (278)
T ss_pred HHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhc
Confidence 999998887 211 1346677788888877665 35555555656667766666444444433
No 276
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.17 E-value=0.019 Score=42.28 Aligned_cols=131 Identities=23% Similarity=0.153 Sum_probs=85.6
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCC-Chh----hhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHH
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASV-PER----AESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNR 79 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (186)
.+...+..+..+...|+..+|+..++..+..... ... .....+... ..................+.++..+
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~l~~ 258 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE----SLEVISSTNLDKESKELKAKAFLLL 258 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc----ccccccccchhhhhHHHHHHHHHHH
Confidence 3566777888999999999999999999883222 111 000000000 0000000000112223345788888
Q ss_pred HHHHhhh------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCH-----------------HHHHHHHHHHHhc
Q 044796 80 GICFLKL------GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF-----------------EEAIADMKKILEF 136 (186)
Q Consensus 80 a~~~~~~------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~-----------------~~A~~~~~~al~~ 136 (186)
|...... +..++++..|..+++.+|....+|+..|..+...-+. ..|+..|-+++..
T Consensus 259 a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~ 338 (352)
T PF02259_consen 259 AKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSL 338 (352)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhh
Confidence 8888888 8899999999999999999999999999876654322 2377778888877
Q ss_pred CCC
Q 044796 137 DPS 139 (186)
Q Consensus 137 ~p~ 139 (186)
.+.
T Consensus 339 ~~~ 341 (352)
T PF02259_consen 339 GSK 341 (352)
T ss_pred CCC
Confidence 776
No 277
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.16 E-value=0.0099 Score=48.03 Aligned_cols=146 Identities=14% Similarity=0.092 Sum_probs=90.9
Q ss_pred hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHH
Q 044796 12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFE 90 (186)
Q Consensus 12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 90 (186)
.|......|..++|...|.+.-..+-- ...+ ..+...++...-+.....+ ....|++.|..+...++.+
T Consensus 806 vAvLAieLgMlEeA~~lYr~ckR~DLl--------NKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~ 875 (1416)
T KOG3617|consen 806 VAVLAIELGMLEEALILYRQCKRYDLL--------NKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIE 875 (1416)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHH--------HHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHH
Confidence 345566778888888888776543211 1111 1111111111111111111 2267788888888888888
Q ss_pred HHHHHHHHH----------HhcCcc----------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------------
Q 044796 91 ESIKECTKA----------LELNPT----------YMKALIRRAEAHEKLEHFEEAIADMKKILEF-------------- 136 (186)
Q Consensus 91 ~A~~~~~~a----------l~~~p~----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------------- 136 (186)
.|+++|+++ +..+|. ++..|.+-|.-+...|+.+.|+.+|..|-..
T Consensus 876 ~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~ 955 (1416)
T KOG3617|consen 876 AALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTD 955 (1416)
T ss_pred HHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCch
Confidence 888888874 222343 3556777788888999999999988887543
Q ss_pred -------CCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796 137 -------DPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 137 -------~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
...+..+.+.+++-|.. .|++.+|+..|.++
T Consensus 956 kAa~iA~esgd~AAcYhlaR~YEn-----~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 956 KAARIAEESGDKAACYHLARMYEN-----DGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHHHhhh-----hHHHHHHHHHHHHH
Confidence 23456677888888888 77788888887655
No 278
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.16 E-value=0.013 Score=38.98 Aligned_cols=101 Identities=12% Similarity=0.160 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-ChHHHHHHH
Q 044796 73 SICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPS-NNQAKRTIL 148 (186)
Q Consensus 73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 148 (186)
...+..+|..|.+.|+.++|+++|.++....... ...++.+-.+....|++.....+..++-.+-.. ..+...+.-
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3788999999999999999999999988754322 456677777888899999999999999776433 222333334
Q ss_pred HHHHHHHHHhhccccccchhhhhcc
Q 044796 149 RKLKEMGNSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 149 ~~~~~~~~~~~~~~~~A~~~~~~~~ 173 (186)
.++..+.....++|..|...|-.+.
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccC
Confidence 4565566666889998888886653
No 279
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.15 E-value=0.015 Score=37.02 Aligned_cols=86 Identities=8% Similarity=-0.111 Sum_probs=67.0
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK 85 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (186)
...+..........++++++...+...-.+.|+. + ..-..-|.++..
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~--------------------------~-------e~d~~dg~l~i~ 56 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNL--------------------------K-------ELDMFDGWLLIA 56 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc--------------------------c-------ccchhHHHHHHH
Confidence 3445556666667888888888888877788882 2 455667788888
Q ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHH
Q 044796 86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 124 (186)
.|+|.+|+..++...+-.+..+.+--.++.|+.-+||.+
T Consensus 57 rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 57 RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH
Confidence 899999999999988877777888888899999888874
No 280
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.15 E-value=0.018 Score=35.25 Aligned_cols=98 Identities=18% Similarity=0.222 Sum_probs=62.6
Q ss_pred HHHHHHH--HHHhhhccHHHHHHHHHHHHhcCcc------------cHHHHHHHHHHHHHhcCHHHHHHHHHHHH-----
Q 044796 74 ICHSNRG--ICFLKLGKFEESIKECTKALELNPT------------YMKALIRRAEAHEKLEHFEEAIADMKKIL----- 134 (186)
Q Consensus 74 ~~~~~~a--~~~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al----- 134 (186)
.+|..++ .-.+..|-|++|...+.++.....+ +.-++..++-++..+|+|++++..-.+++
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 4454444 4455678899999999999986432 24467778889999999998776555555
Q ss_pred --hcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796 135 --EFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 135 --~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
+++.+....|.... +-..++-.-.|+.++|+..|+++
T Consensus 88 RGEL~qdeGklWIaaV-fsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAV-FSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp H--TTSTHHHHHHHHH-HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred ccccccccchhHHHHH-HHHHHHHHhcCChHHHHHHHHHH
Confidence 56666665554221 11122223389999999999876
No 281
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.13 E-value=0.0087 Score=44.26 Aligned_cols=109 Identities=10% Similarity=0.021 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHH---hcCHHHHHHHHHH-HHhcCCCChHH
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKALEL----NPTYMKALIRRAEAHEK---LEHFEEAIADMKK-ILEFDPSNNQA 143 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~ 143 (186)
.+....++=..|....+|+.-+...+..-.. -++.+.+-..+|.++.+ .|+.++|+..+.. .....+.++++
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4466677778899999999888888877666 44567788889999999 9999999999999 55667778999
Q ss_pred HHHHHHHHHHHHHHh----hccccccchhhhhcccCCCCcc
Q 044796 144 KRTILRKLKEMGNSI----LGRFGMSTDNFKAVKDPNTGAY 180 (186)
Q Consensus 144 ~~~l~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~ 180 (186)
+-.+|+++..+-... ....+.|+..|.++-..+++.|
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y 260 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY 260 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence 999999988765431 3457889999988844434433
No 282
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.12 E-value=0.035 Score=41.92 Aligned_cols=127 Identities=13% Similarity=0.059 Sum_probs=87.5
Q ss_pred HHHHHHHhHhHHHHccc-HHHHHHHHHHHHhccCCChhhhhccchh--------h------hhcCchhHHHhhCCCcchh
Q 044796 5 EANEAKLEGNKLFAEGK-YEEALLQYEVALRVASVPERAESASAPE--------A------KEGQSASEKKEVAPAPEMA 69 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~~~~~--------~------~~~~~~~~~~~~~~~~~~~ 69 (186)
-+.-+..-|..++..|. -++|+..++.++...|.+.......-.. . ..-..+.....+...|-..
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i 457 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITI 457 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccc
Confidence 34556677778888887 8899999999999988876432211100 0 1111233333333322211
Q ss_pred HHHHHHHHHH--HHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796 70 ELRSICHSNR--GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKI 133 (186)
Q Consensus 70 ~~~~~~~~~~--a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (186)
. ....-..+ |...+..|+|.++..+..-..++.| .+.++..+|.|+....+|++|..++...
T Consensus 458 ~-e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 458 S-EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred c-HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 1 22333334 4566789999999999999999999 8999999999999999999999988764
No 283
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.12 E-value=0.011 Score=37.64 Aligned_cols=84 Identities=11% Similarity=-0.011 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
.............++.+++...+...--+.|+.+.+-..-|.++...|++.+|++.|+...+-.+..+-..-.++.|+..
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a 90 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNA 90 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh
Confidence 34445555555688999999999888889999999999999999999999999999999999988888888888988888
Q ss_pred HHHH
Q 044796 154 MGNS 157 (186)
Q Consensus 154 ~~~~ 157 (186)
+|+.
T Consensus 91 l~Dp 94 (153)
T TIGR02561 91 KGDA 94 (153)
T ss_pred cCCh
Confidence 6553
No 284
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.08 E-value=0.015 Score=33.98 Aligned_cols=53 Identities=17% Similarity=0.145 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc--HHHHHHHHHHHHHhcCHH
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY--MKALIRRAEAHEKLEHFE 124 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~~~~~g~~~ 124 (186)
+..+.+.+|..+...|++++|+..+-.+++.++++ ..+.-.+-.++..+|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 33788999999999999999999999999998876 445455555555555543
No 285
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.06 E-value=0.007 Score=47.30 Aligned_cols=94 Identities=15% Similarity=0.081 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTI 147 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 147 (186)
..+.+.|.-+++..+|..+++.|...+..-|.+ ......++.||..+.+.+.|++++..|-+.+|.++.....+
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~ 434 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM 434 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 455667888889999999999999999876654 56788899999999999999999999999999999887777
Q ss_pred HHHHHHHHHHhhccccccchhhhhc
Q 044796 148 LRKLKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 148 ~~~~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
..+... .+.-++|..+..+.
T Consensus 435 ~~~~~~-----E~~Se~AL~~~~~~ 454 (872)
T KOG4814|consen 435 LQSFLA-----EDKSEEALTCLQKI 454 (872)
T ss_pred HHHHHH-----hcchHHHHHHHHHH
Confidence 665555 55555555554433
No 286
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.04 E-value=0.0081 Score=36.22 Aligned_cols=90 Identities=8% Similarity=0.083 Sum_probs=64.1
Q ss_pred HHHHHhhhccHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHhcC-----------HHHHHHHHHHHHhcCCCChHHH
Q 044796 79 RGICFLKLGKFEESIKECTKALELNPTYM---KALIRRAEAHEKLEH-----------FEEAIADMKKILEFDPSNNQAK 144 (186)
Q Consensus 79 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~lg~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 144 (186)
+|.-++..|++-+|+...+..+...+++. ..+..-|.++..+.. .-.++++|.++..+.|..+...
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46778899999999999999999887765 455566888776653 2458999999999999986666
Q ss_pred HHHHHHHHHHHHHhhccccccchhhhhcc
Q 044796 145 RTILRKLKEMGNSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~~~A~~~~~~~~ 173 (186)
+.+|.-+-. ...|+++..--++++
T Consensus 82 ~~la~~l~s-----~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 82 FELASQLGS-----VKYYKKAVKKAKRGL 105 (111)
T ss_pred HHHHHHhhh-----HHHHHHHHHHHHHHh
Confidence 666643222 334444444444443
No 287
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.00 E-value=0.028 Score=41.12 Aligned_cols=104 Identities=16% Similarity=0.034 Sum_probs=75.7
Q ss_pred HHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCccc
Q 044796 27 LQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY 106 (186)
Q Consensus 27 ~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~ 106 (186)
.-|++.++.+|.+.+.|..+......... ... .. .-....-.+.-+..+++|++.+|++
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~---------~~~------~~------~~~~~a~~E~klsilerAL~~np~~ 64 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFR---------LQS------SS------KAERRALAERKLSILERALKHNPDS 64 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcc---------ccc------cc------hhhHHHHHHHHHHHHHHHHHhCCCC
Confidence 45788889999988888776543311000 000 00 1111223567789999999999999
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796 107 MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL 151 (186)
Q Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 151 (186)
...+..+=.+.....+.++..+-+++++..+|+++..|..+-...
T Consensus 65 ~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~ 109 (321)
T PF08424_consen 65 ERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFR 109 (321)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 998888888888888999999999999999999999988776544
No 288
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.91 E-value=0.0054 Score=46.91 Aligned_cols=90 Identities=24% Similarity=0.209 Sum_probs=74.7
Q ss_pred HHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Q 044796 79 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL---EHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMG 155 (186)
Q Consensus 79 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 155 (186)
-|.--+..+.+..|+..|.+++...|+....+.+++.++.+. |+.-.|+.....+++++|....+|+.|++++..
T Consensus 380 egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e-- 457 (758)
T KOG1310|consen 380 EGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE-- 457 (758)
T ss_pred hccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH--
Confidence 333334455678999999999999999999999999888775 477789999999999999999999999999999
Q ss_pred HHhhccccccchhhhhcc
Q 044796 156 NSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 156 ~~~~~~~~~A~~~~~~~~ 173 (186)
++++.+|+.+...++
T Consensus 458 ---l~r~~eal~~~~alq 472 (758)
T KOG1310|consen 458 ---LTRYLEALSCHWALQ 472 (758)
T ss_pred ---HhhHHHhhhhHHHHh
Confidence 777777777765543
No 289
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.082 Score=40.37 Aligned_cols=132 Identities=17% Similarity=0.138 Sum_probs=83.8
Q ss_pred HHHHHHHhHhHHHHcc--cHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796 5 EANEAKLEGNKLFAEG--KYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC 82 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 82 (186)
-+..+..+|..+...| +...+++|++..+...|... ..+.....+|.+
T Consensus 6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~------------------------------veart~LqLg~l 55 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFL------------------------------VEARTHLQLGAL 55 (629)
T ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHH------------------------------HHHHHHHHHHHH
Confidence 3577888899999999 89999999999988877721 122444445533
Q ss_pred -HhhhccHHHHHHHHHHHHhcC---ccc----HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 83 -FLKLGKFEESIKECTKALELN---PTY----MKALIRRAEAHEKLE-HFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 83 -~~~~~~~~~A~~~~~~al~~~---p~~----~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
+...++++.|..+++++..+- |+. .++...++.++.... .+..|...+++++++....|- |. .+.+..
T Consensus 56 L~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~-ws--ckllfQ 132 (629)
T KOG2300|consen 56 LLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPY-WS--CKLLFQ 132 (629)
T ss_pred HHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCch-hh--HHHHHH
Confidence 344667777777777777552 222 335556677777666 667777777777777766652 21 122222
Q ss_pred HHHH--hhccccccchhh
Q 044796 154 MGNS--ILGRFGMSTDNF 169 (186)
Q Consensus 154 ~~~~--~~~~~~~A~~~~ 169 (186)
+.+. +.+++..|++.+
T Consensus 133 Laql~~idkD~~sA~elL 150 (629)
T KOG2300|consen 133 LAQLHIIDKDFPSALELL 150 (629)
T ss_pred HHHHHhhhccchhHHHHH
Confidence 3332 366666666664
No 290
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=96.91 E-value=0.0022 Score=45.79 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHH-HHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIR-RAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR 149 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 149 (186)
++..|...+..-.+.|-+.+--..|.++++.+|.+.+.|.. .+.-+...++++.+...|.++++.+|.+|..|...-+
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr 184 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR 184 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence 34788888887788889999999999999999999999887 4556888999999999999999999999999876554
No 291
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.90 E-value=0.087 Score=37.73 Aligned_cols=116 Identities=17% Similarity=0.121 Sum_probs=82.3
Q ss_pred hHHHHHHHhHhHHHHcc-cHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEG-KYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC 82 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 82 (186)
..++.+++.|...+..+ +++.|+..++++.++-+.... .....+........++..++.+
T Consensus 33 ~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-------------------~~~~~~~~~elr~~iL~~La~~ 93 (278)
T PF08631_consen 33 ELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-------------------MDKLSPDGSELRLSILRLLANA 93 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-------------------ccccCCcHHHHHHHHHHHHHHH
Confidence 45788999999999999 999999999999988422100 0011344444566788888999
Q ss_pred HhhhccHH---HHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 044796 83 FLKLGKFE---ESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDP 138 (186)
Q Consensus 83 ~~~~~~~~---~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 138 (186)
+...+.++ +|....+.+-...|+.+..+...=.++.+.++.+.+.+.+.+++..-+
T Consensus 94 ~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 94 YLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 98877654 555556566666787777775555555558888888888888887544
No 292
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.90 E-value=0.028 Score=38.56 Aligned_cols=92 Identities=13% Similarity=-0.031 Sum_probs=59.2
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
..|..+..+|..+...|+.+.....+++|+......-. ....|........+.+.+|.+.
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~--------------------~e~~~~~~~~~~~l~YLigeL~ 175 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYE--------------------NEDFPIEGMDEATLLYLIGELN 175 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH--------------------hCcCCCCCchHHHHHHHHHHHH
Confidence 56788888999999888866666666665554332000 0001111122347888999999
Q ss_pred hhhccHHHHHHHHHHHHhcCcccH-HHHHHHHH
Q 044796 84 LKLGKFEESIKECTKALELNPTYM-KALIRRAE 115 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~ 115 (186)
.+.|++++|+.+|.+++....... ..+..+|.
T Consensus 176 rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 176 RRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Confidence 999999999999999997533222 34444443
No 293
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.85 E-value=0.0038 Score=30.38 Aligned_cols=29 Identities=31% Similarity=0.346 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796 108 KALIRRAEAHEKLEHFEEAIADMKKILEF 136 (186)
Q Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (186)
.++.++|.++..+|++++|+.++++++.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35667777777777777777777777654
No 294
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.84 E-value=0.0031 Score=43.10 Aligned_cols=61 Identities=26% Similarity=0.264 Sum_probs=54.1
Q ss_pred hHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHH
Q 044796 14 NKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESI 93 (186)
Q Consensus 14 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 93 (186)
......++.+.|.+.|.+++.+-|+ ....|+.+|....+.|+++.|.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~---------------------------------w~~gwfR~g~~~ekag~~daAa 49 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPE---------------------------------WAAGWFRLGEYTEKAGEFDAAA 49 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCch---------------------------------hhhhhhhcchhhhhcccHHHHH
Confidence 3456788999999999999999999 3378899999999999999999
Q ss_pred HHHHHHHhcCcccH
Q 044796 94 KECTKALELNPTYM 107 (186)
Q Consensus 94 ~~~~~al~~~p~~~ 107 (186)
..|++.++++|.+.
T Consensus 50 ~a~~~~L~ldp~D~ 63 (287)
T COG4976 50 AAYEEVLELDPEDH 63 (287)
T ss_pred HHHHHHHcCCcccc
Confidence 99999999999764
No 295
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.80 E-value=0.0043 Score=30.15 Aligned_cols=33 Identities=36% Similarity=0.379 Sum_probs=27.4
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCC
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASV 38 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 38 (186)
+..+.++|..+...|++++|..++++++.+.-.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 567889999999999999999999999986543
No 296
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.067 Score=37.57 Aligned_cols=80 Identities=18% Similarity=0.119 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhhc-cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHH-HHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLG-KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE-EAIADMKKILEFDPSNNQAKRTILRKL 151 (186)
Q Consensus 74 ~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~l~~~~ 151 (186)
.+|..+=.+...++ +..+-+.++...++.+|.+-.+|+.+-.+...+|++. .-+...+.++..+..+--+|....-++
T Consensus 78 TVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~ 157 (318)
T KOG0530|consen 78 TVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVL 157 (318)
T ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHH
Confidence 44444444444333 3556667777777777777777777777777777766 667777777777777766666666655
Q ss_pred HH
Q 044796 152 KE 153 (186)
Q Consensus 152 ~~ 153 (186)
..
T Consensus 158 r~ 159 (318)
T KOG0530|consen 158 RF 159 (318)
T ss_pred HH
Confidence 55
No 297
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.78 E-value=0.035 Score=46.11 Aligned_cols=103 Identities=17% Similarity=0.189 Sum_probs=73.8
Q ss_pred hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh-----
Q 044796 12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL----- 86 (186)
Q Consensus 12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~----- 86 (186)
....+...+.|++|+..|++.-...|.-.+.+ .+.+..|.+...+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~ 530 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGY------------------------------EAQFRLGITLLEKASEQG 530 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccch------------------------------HHHHHhhHHHHHHHHhcC
Confidence 34567788899999999999999999843322 3444444444321
Q ss_pred --ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHH
Q 044796 87 --GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKR 145 (186)
Q Consensus 87 --~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 145 (186)
..+++|+..|++... .|..|--|...|.+|..+|++++-++++.-|++.-|..|.+-.
T Consensus 531 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (932)
T PRK13184 531 DPRDFTQALSEFSYLHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISR 590 (932)
T ss_pred ChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHH
Confidence 357777777777544 5666777888888888888888888888888888877766543
No 298
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.012 Score=41.09 Aligned_cols=128 Identities=17% Similarity=0.080 Sum_probs=69.5
Q ss_pred HHcccHHHHHHHHHHHHhccCCChhhhhccchhhhh--cCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHH-HHH
Q 044796 17 FAEGKYEEALLQYEVALRVASVPERAESASAPEAKE--GQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFE-ESI 93 (186)
Q Consensus 17 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~A~ 93 (186)
.+...-..|+..-..+|.++|.+-.+|..+-.+... .+.......+.......|.+...|..+-.+....|+.. .-+
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rEL 133 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFREL 133 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchH
Confidence 345567778888888888888877776655443311 11111111111111122222366666655555566655 556
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHH
Q 044796 94 KECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAK 144 (186)
Q Consensus 94 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 144 (186)
...+..+..+..+--+|..+-.+...-+.++.-+.+..+.++.+-.|..+|
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAW 184 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAW 184 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchh
Confidence 666666666666666666666666666666655555555555444333333
No 299
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.73 E-value=0.045 Score=38.04 Aligned_cols=78 Identities=12% Similarity=0.067 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CCChHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALEL------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD----PSNNQA 143 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~ 143 (186)
..+-..+.++.+...|.+|-..+.+-... .|+....+...-.++....||..|..+++..-++. |++..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 55666778888888998887777764433 23334445555566777789999999999987653 444555
Q ss_pred HHHHHHHH
Q 044796 144 KRTILRKL 151 (186)
Q Consensus 144 ~~~l~~~~ 151 (186)
..+|-..+
T Consensus 231 lenLL~ay 238 (308)
T KOG1585|consen 231 LENLLTAY 238 (308)
T ss_pred HHHHHHHh
Confidence 55554433
No 300
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.69 E-value=0.18 Score=38.31 Aligned_cols=153 Identities=10% Similarity=-0.036 Sum_probs=99.4
Q ss_pred hHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-----hhcCc------hhHHHh---hCCCcchhHHHHHHHHHH
Q 044796 14 NKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-----KEGQS------ASEKKE---VAPAPEMAELRSICHSNR 79 (186)
Q Consensus 14 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-----~~~~~------~~~~~~---~~~~~~~~~~~~~~~~~~ 79 (186)
....+.++...|..++.-...++|...-..-.+.... ..++. ...... .....-...-....+..-
T Consensus 306 s~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~ 385 (549)
T PF07079_consen 306 SFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFG 385 (549)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 3446788899999999998899998663222222111 00111 111111 111111111123455556
Q ss_pred HHHHhhhcc-HHHHHHHHHHHHhcCcccH----------------------------------------------HHHHH
Q 044796 80 GICFLKLGK-FEESIKECTKALELNPTYM----------------------------------------------KALIR 112 (186)
Q Consensus 80 a~~~~~~~~-~~~A~~~~~~al~~~p~~~----------------------------------------------~~~~~ 112 (186)
|.-++..|. -++|+..++.+++..|.+. +.-..
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF 465 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence 666777776 7888888888887765432 11112
Q ss_pred H--HHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796 113 R--AEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 113 l--g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
+ |.-++..|+|.++.-+-.=..++.| ++.++..+|.++.. .++|++|-+++...
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e-----~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLME-----NKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHH-----HhhHHHHHHHHHhC
Confidence 3 3347788999999999888999999 79999999988888 99999999999875
No 301
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.69 E-value=0.12 Score=37.23 Aligned_cols=73 Identities=19% Similarity=0.061 Sum_probs=52.6
Q ss_pred HHHHHHHHhhhc-------cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHH
Q 044796 76 HSNRGICFLKLG-------KFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIADMKKILEFDPSNNQAK 144 (186)
Q Consensus 76 ~~~~a~~~~~~~-------~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 144 (186)
...+|.++..-. +...|+..+.++-... ++.+.+.+|.+|.. ..++.+|..+|.++.+... ..+.
T Consensus 151 ~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~ 226 (292)
T COG0790 151 MYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAAC 226 (292)
T ss_pred HHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHH
Confidence 555666665431 3347888888888765 77888888987754 2388999999999998877 7777
Q ss_pred HHHHHHHHH
Q 044796 145 RTILRKLKE 153 (186)
Q Consensus 145 ~~l~~~~~~ 153 (186)
+.++ ++..
T Consensus 227 ~~~~-~~~~ 234 (292)
T COG0790 227 YNLG-LMYL 234 (292)
T ss_pred HHHH-HHHh
Confidence 7777 4444
No 302
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=96.67 E-value=0.01 Score=28.11 Aligned_cols=32 Identities=19% Similarity=0.096 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHH--HHHHHhcCCC
Q 044796 108 KALIRRAEAHEKLEHFEEAIAD--MKKILEFDPS 139 (186)
Q Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~--~~~al~~~p~ 139 (186)
+.++.+|..+...|++++|+.. |+-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 3455666666667777777766 4355555554
No 303
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.67 E-value=0.0034 Score=48.60 Aligned_cols=97 Identities=15% Similarity=0.141 Sum_probs=82.0
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 044796 78 NRGICFLKLGKFEESIKECTKALELNPTYM-KALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN 156 (186)
Q Consensus 78 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 156 (186)
.-|..+...|+...|+.++..|+...|... ....++|.++.+-|-.-+|-..+.+++.++...|-.++.+|+.+..
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~--- 688 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLA--- 688 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHH---
Confidence 345666778999999999999999988654 3577899999999999999999999999998888888888887777
Q ss_pred HhhccccccchhhhhcccCCCCc
Q 044796 157 SILGRFGMSTDNFKAVKDPNTGA 179 (186)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~~~~~~ 179 (186)
+.+.+.|++.|+.+++.++..
T Consensus 689 --l~~i~~a~~~~~~a~~~~~~~ 709 (886)
T KOG4507|consen 689 --LKNISGALEAFRQALKLTTKC 709 (886)
T ss_pred --HhhhHHHHHHHHHHHhcCCCC
Confidence 889999999999996554443
No 304
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.15 Score=39.10 Aligned_cols=103 Identities=21% Similarity=0.127 Sum_probs=83.0
Q ss_pred HHHHHHHhHhHH-HHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 5 EANEAKLEGNKL-FAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 5 ~a~~~~~~g~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
++....++|..+ ....+++.|..+++++..+... .|+.......+...++.+|
T Consensus 45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~--------------------------ip~fydvKf~a~SlLa~lh 98 (629)
T KOG2300|consen 45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKS--------------------------IPSFYDVKFQAASLLAHLH 98 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcc--------------------------cccHHhhhhHHHHHHHHHH
Confidence 456677888655 4688999999999999988777 5666556678888999999
Q ss_pred hhhc-cHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796 84 LKLG-KFEESIKECTKALELNPTYM----KALIRRAEAHEKLEHFEEAIADMKKI 133 (186)
Q Consensus 84 ~~~~-~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (186)
.... .+..|...+.+++++....| ...+.++.++.-..|+..|++.+.-.
T Consensus 99 ~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavg 153 (629)
T KOG2300|consen 99 HQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVG 153 (629)
T ss_pred HHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcc
Confidence 8887 78999999999999876665 45667899999999999999885443
No 305
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.58 E-value=0.1 Score=38.83 Aligned_cols=120 Identities=13% Similarity=-0.015 Sum_probs=77.8
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhh-----cc--chhhhhcCchhHHHhhCCCcchhHHHHHHHH
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAES-----AS--APEAKEGQSASEKKEVAPAPEMAELRSICHS 77 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (186)
+.+.+.+++.++..+|+.+.|.+..++||=.......... .. |.+.-. . ..+.+. .-..+.+
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~---------~-~~~eNR-~fflal~ 107 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLD---------Y-RRPENR-QFFLALF 107 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccC---------C-ccccch-HHHHHHH
Confidence 5688999999999999999999999999754432111111 11 111100 0 011111 1124556
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHhcCcc-cHHH-HHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796 78 NRGICFLKLGKFEESIKECTKALELNPT-YMKA-LIRRAEAHEKLEHFEEAIADMKKILE 135 (186)
Q Consensus 78 ~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~-~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (186)
.......+.|-+..|+++++-.+.++|. ||-. .+.+-....+.++++-=++.++....
T Consensus 108 r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 108 RYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 6677888899999999999999999998 7654 44444445566777766666665544
No 306
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.54 E-value=0.036 Score=44.32 Aligned_cols=117 Identities=34% Similarity=0.595 Sum_probs=93.8
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
.++......|+..++.+++..+.--|..++.+-|.+. ........+.+.++
T Consensus 51 ~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~-----------------------------~~~a~~~~~~~s~~ 101 (748)
T KOG4151|consen 51 SRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDH-----------------------------HVVATLRSNQASCY 101 (748)
T ss_pred HHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccc-----------------------------hhhhhHHHHHHHHH
Confidence 4566677788899999999998888888888888521 11234555666666
Q ss_pred hh--hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796 84 LK--LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILR 149 (186)
Q Consensus 84 ~~--~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 149 (186)
+. .++|.+++..++-++...|....++...+.+|.-++.++-|++...-....+|.+..+...+.+
T Consensus 102 m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~e 169 (748)
T KOG4151|consen 102 MQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEE 169 (748)
T ss_pred hhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHH
Confidence 54 6799999999999999999999999999999999999999999988888999998766554444
No 307
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.51 E-value=0.033 Score=32.81 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=44.8
Q ss_pred HHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHH
Q 044796 15 KLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIK 94 (186)
Q Consensus 15 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 94 (186)
..++.|+|..|++.+.+..+....... +........+...+|.++...|++++|+.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~------------------------~~~~~~~~~all~lA~~~~~~G~~~~A~~ 62 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNN------------------------SSSNSGLAYALLNLAELHRRFGHYEEALQ 62 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhccc------------------------chhhHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 456889999999999988877555211 00001122556778888888888888888
Q ss_pred HHHHHHhcC
Q 044796 95 ECTKALELN 103 (186)
Q Consensus 95 ~~~~al~~~ 103 (186)
.+++++.+-
T Consensus 63 ~l~eAi~~A 71 (94)
T PF12862_consen 63 ALEEAIRLA 71 (94)
T ss_pred HHHHHHHHH
Confidence 888888763
No 308
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=96.49 E-value=0.021 Score=40.66 Aligned_cols=62 Identities=13% Similarity=0.048 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 92 SIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 92 A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
|..+|.+|+.+.|+....++.+|.+....|+.-.|+-+|-+++-.....+.+..++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997766668888888887776
No 309
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.44 E-value=0.17 Score=40.02 Aligned_cols=127 Identities=16% Similarity=0.052 Sum_probs=83.4
Q ss_pred HHHhHhHHHHcc-----cHHHHHHHHHHHHhccCCChhhhhccchhhhhcC-ch---hHHHhhCCCcchhHHHHHHHHHH
Q 044796 9 AKLEGNKLFAEG-----KYEEALLQYEVALRVASVPERAESASAPEAKEGQ-SA---SEKKEVAPAPEMAELRSICHSNR 79 (186)
Q Consensus 9 ~~~~g~~~~~~~-----~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~ 79 (186)
...+|.+|.+.. +...|+.+|.++-+... +++.+.+|.+...+. .. .+...+...... ....+.+.+
T Consensus 291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~l 366 (552)
T KOG1550|consen 291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRL 366 (552)
T ss_pred ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHH
Confidence 556788887743 77889999999888754 456666666664433 22 222222211111 134778888
Q ss_pred HHHHhh----hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCCh
Q 044796 80 GICFLK----LGKFEESIKECTKALELNPTYMKALIRRAEAHEKL-EHFEEAIADMKKILEFDPSNN 141 (186)
Q Consensus 80 a~~~~~----~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~~ 141 (186)
|.|+.. ..+...|..+++++.+.+ .+.+.+.++..+... +++..+...+....++.-..+
T Consensus 367 a~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~ 431 (552)
T KOG1550|consen 367 ALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVA 431 (552)
T ss_pred HHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHH
Confidence 888864 357899999999999987 566677777665433 888887777777666554433
No 310
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=96.39 E-value=0.011 Score=45.02 Aligned_cols=127 Identities=16% Similarity=0.142 Sum_probs=94.1
Q ss_pred HHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHH
Q 044796 15 KLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESI 93 (186)
Q Consensus 15 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 93 (186)
..+..|+.-.|-.-...++...|.+|......+.+. ..+..+.....+............+...+-.....+|++++|.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 456789999999999999999999888777666665 4455555554443322222122245555566777899999999
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 044796 94 KECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN 141 (186)
Q Consensus 94 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 141 (186)
......+...-.++++..-.+..-..+|-+++++..+++.+.++|...
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 999998887777788777777778888999999999999999988643
No 311
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.36 E-value=0.16 Score=37.83 Aligned_cols=27 Identities=7% Similarity=-0.017 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKAL 100 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al 100 (186)
+++...-......|+|+.|++..+...
T Consensus 189 WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 189 WAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 444444444555666666666665544
No 312
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.35 E-value=0.019 Score=42.85 Aligned_cols=88 Identities=13% Similarity=0.136 Sum_probs=69.3
Q ss_pred HHHHhhhccHHHHHHHHHHHHhcC--------ccc----------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 044796 80 GICFLKLGKFEESIKECTKALELN--------PTY----------MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN 141 (186)
Q Consensus 80 a~~~~~~~~~~~A~~~~~~al~~~--------p~~----------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 141 (186)
|..++++++|..|..-|..++++- |.. .-+--.+..||..+++.+-|+....+.+-++|..+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 556667778888877777777652 211 12344678999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796 142 QAKRTILRKLKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
.-+..-+.+... +.+|.+|.+.+..+
T Consensus 263 rnHLrqAavfR~-----LeRy~eAarSamia 288 (569)
T PF15015_consen 263 RNHLRQAAVFRR-----LERYSEAARSAMIA 288 (569)
T ss_pred hHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 999998988888 88888887776544
No 313
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.32 E-value=0.23 Score=35.66 Aligned_cols=154 Identities=17% Similarity=0.079 Sum_probs=96.0
Q ss_pred hHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhc-----CchhHHHhhCCCcchhHHHHHHHHHHHHHHhh---
Q 044796 14 NKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEG-----QSASEKKEVAPAPEMAELRSICHSNRGICFLK--- 85 (186)
Q Consensus 14 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~--- 85 (186)
......+++..|...+.++-... ++.....++..+..+ +...+...+. .......+...+.+|.++..
T Consensus 49 ~~~~~~~~~~~a~~~~~~a~~~~--~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~g 124 (292)
T COG0790 49 AGSAYPPDYAKALKSYEKAAELG--DAAALALLGQMYGAGKGVSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRG 124 (292)
T ss_pred ccccccccHHHHHHHHHHhhhcC--ChHHHHHHHHHHHhccCccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCC
Confidence 33446677777777777766622 223444444433221 1122222222 11111234677888888877
Q ss_pred -hccHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHhc-------CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Q 044796 86 -LGKFEESIKECTKALELNPTY-MKALIRRAEAHEKLE-------HFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGN 156 (186)
Q Consensus 86 -~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 156 (186)
..+..+|..+|+++.+..-.. ..+.+.+|.++..-+ +...|...|.++-... ++.+...++.++.. |.
T Consensus 125 v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~-G~ 201 (292)
T COG0790 125 VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK-GL 201 (292)
T ss_pred cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc-CC
Confidence 558999999999999874333 344888888877642 3347999999998766 67788888855543 33
Q ss_pred Hhhccccccchhhhhccc
Q 044796 157 SILGRFGMSTDNFKAVKD 174 (186)
Q Consensus 157 ~~~~~~~~A~~~~~~~~~ 174 (186)
....++.+|..+|.++-.
T Consensus 202 Gv~~d~~~A~~wy~~Aa~ 219 (292)
T COG0790 202 GVPRDLKKAFRWYKKAAE 219 (292)
T ss_pred CCCcCHHHHHHHHHHHHH
Confidence 346678899999987743
No 314
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=96.24 E-value=0.083 Score=35.63 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHHHHHhhccccc
Q 044796 90 EESIKECTKALELN-PTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS----NNQAKRTILRKLKEMGNSILGRFGM 164 (186)
Q Consensus 90 ~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (186)
++|...|-++-... -+++...+.+|..|. ..+.++|+..+.+++++.+. |+++...|+.++.. +++++.
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~-----~~~~e~ 196 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK-----LKNYEQ 196 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-----hcchhh
Confidence 45555554433221 134555555554443 56667777777777766443 36666666666666 555544
Q ss_pred c
Q 044796 165 S 165 (186)
Q Consensus 165 A 165 (186)
|
T Consensus 197 A 197 (203)
T PF11207_consen 197 A 197 (203)
T ss_pred h
Confidence 4
No 315
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=96.20 E-value=0.064 Score=31.58 Aligned_cols=59 Identities=22% Similarity=0.438 Sum_probs=46.0
Q ss_pred HHhhhccHHHHHHHHHHHHhcCc---------ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 044796 82 CFLKLGKFEESIKECTKALELNP---------TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN 140 (186)
Q Consensus 82 ~~~~~~~~~~A~~~~~~al~~~p---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 140 (186)
.....|+|.+|++.+.+...... ....++.++|.+....|++++|+..+++++.+....
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 34567899999877777765421 124678889999999999999999999999886543
No 316
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.19 E-value=0.087 Score=37.55 Aligned_cols=64 Identities=17% Similarity=0.174 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796 73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF 136 (186)
Q Consensus 73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (186)
..++..++..+...|+++.++..+++.+..+|.+-.+|..+=.++...|+...|+..|++.-+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 4677889999999999999999999999999999999999999999999999999999998774
No 317
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.19 E-value=0.094 Score=29.58 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=41.7
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHH---HHHHHhcCHHHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRA---EAHEKLEHFEEAIADMKKIL 134 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg---~~~~~~g~~~~A~~~~~~al 134 (186)
.-....|.-++...+.++|+..++++++..++.+.-+..+| .++...|+|++.+.+-.+=+
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777888888888888888777666555554 45777788877766544433
No 318
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=96.16 E-value=0.0091 Score=25.96 Aligned_cols=23 Identities=22% Similarity=0.023 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHH
Q 044796 109 ALIRRAEAHEKLEHFEEAIADMK 131 (186)
Q Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~ 131 (186)
+.+.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45556666666666666666554
No 319
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.13 Score=40.14 Aligned_cols=93 Identities=20% Similarity=0.170 Sum_probs=64.1
Q ss_pred HHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHH-HHhcCCCChHHHHHHHHHHHHHHHH
Q 044796 79 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK-ILEFDPSNNQAKRTILRKLKEMGNS 157 (186)
Q Consensus 79 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~p~~~~~~~~l~~~~~~~~~~ 157 (186)
+.......++...+......++..+|.+..++.++|.++...|....+...+.. +....|.+.+....+..++. +|+.
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~ 151 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQ-LGRY 151 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHH-HHHH
Confidence 566666777777788888888888888888888888887777776666665555 77788888777777755555 4443
Q ss_pred --hhccccccchhhhhc
Q 044796 158 --ILGRFGMSTDNFKAV 172 (186)
Q Consensus 158 --~~~~~~~A~~~~~~~ 172 (186)
.+++..++.....++
T Consensus 152 ~~~l~~~~~~~~~l~~~ 168 (620)
T COG3914 152 LKLLGRTAEAELALERA 168 (620)
T ss_pred HHHhccHHHHHHHHHHH
Confidence 245555554444444
No 320
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.13 E-value=0.38 Score=36.01 Aligned_cols=129 Identities=18% Similarity=0.109 Sum_probs=63.7
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
+...-...|.+....|+-..|.+.-.++-++-..+.++ -+...-++...
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~llssDqep-------------------------------LIhlLeAQaal 131 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEP-------------------------------LIHLLEAQAAL 131 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchH-------------------------------HHHHHHHHHHH
Confidence 33444455556666666666666666655443332222 23333445555
Q ss_pred hhccHHHHHHHHHHHHhcCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcccc
Q 044796 85 KLGKFEESIKECTKALELNPTY-MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFG 163 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (186)
..|+++.|.+-|+.-+. +|.- .-.+..+=.--..+|+.+.|..+-+++-...|.-++++...-..... .|+++
T Consensus 132 ~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~-----~gdWd 205 (531)
T COG3898 132 LEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCA-----AGDWD 205 (531)
T ss_pred hcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHh-----cCChH
Confidence 55666666666555443 2321 11111111223355666666666666666666655555544433333 55555
Q ss_pred ccchhhh
Q 044796 164 MSTDNFK 170 (186)
Q Consensus 164 ~A~~~~~ 170 (186)
.|++...
T Consensus 206 ~AlkLvd 212 (531)
T COG3898 206 GALKLVD 212 (531)
T ss_pred HHHHHHH
Confidence 5555543
No 321
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.12 E-value=0.19 Score=37.42 Aligned_cols=110 Identities=17% Similarity=0.127 Sum_probs=77.7
Q ss_pred HcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 044796 18 AEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECT 97 (186)
Q Consensus 18 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 97 (186)
....|+++...|..++... +++....+ ....|+..+.+..++.++..+|+.+.|-..++
T Consensus 6 hs~~Y~~~q~~F~~~v~~~--Dp~~l~~l-------------------l~~~PyHidtLlqls~v~~~~gd~~~A~~lle 64 (360)
T PF04910_consen 6 HSKAYQEAQEQFYAAVQSH--DPNALINL-------------------LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLE 64 (360)
T ss_pred CCHHHHHHHHHHHHHHHcc--CHHHHHHH-------------------HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3456777777777777654 22222111 12334556899999999999999999999999
Q ss_pred HHHhc--------------Ccc------------c---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-ChHHHHHH
Q 044796 98 KALEL--------------NPT------------Y---MKALIRRAEAHEKLEHFEEAIADMKKILEFDPS-NNQAKRTI 147 (186)
Q Consensus 98 ~al~~--------------~p~------------~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l 147 (186)
+|+-. ++. | -.++++....+.+.|-+..|++..+-.+.++|. ||-.-...
T Consensus 65 RALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ 144 (360)
T PF04910_consen 65 RALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLF 144 (360)
T ss_pred HHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHH
Confidence 88733 111 1 235667788899999999999999999999999 76544333
Q ss_pred H
Q 044796 148 L 148 (186)
Q Consensus 148 ~ 148 (186)
.
T Consensus 145 I 145 (360)
T PF04910_consen 145 I 145 (360)
T ss_pred H
Confidence 3
No 322
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.08 E-value=0.2 Score=45.13 Aligned_cols=117 Identities=10% Similarity=-0.024 Sum_probs=91.6
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
..++.|.+.|.+....|.++.|..+.-.|.+..+. .++...|...
T Consensus 1668 ~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~-----------------------------------~i~~E~AK~l 1712 (2382)
T KOG0890|consen 1668 RLGECWLQSARIARLAGHLQRAQNALLNAKESRLP-----------------------------------EIVLERAKLL 1712 (2382)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc-----------------------------------hHHHHHHHHH
Confidence 45788999999999999999999999888887766 8999999999
Q ss_pred hhhccHHHHHHHHHHHHhcCccc-----------------HHHHHHHHHHHHHhcCH--HHHHHHHHHHHhcCCCChHHH
Q 044796 84 LKLGKFEESIKECTKALELNPTY-----------------MKALIRRAEAHEKLEHF--EEAIADMKKILEFDPSNNQAK 144 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~-----------------~~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~ 144 (186)
+..|+-..|+..+++.++.+-.+ ..+.+..+.-....|++ .+-++.|..+..+.|.....+
T Consensus 1713 W~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~h 1792 (2382)
T KOG0890|consen 1713 WQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKH 1792 (2382)
T ss_pred HhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCce
Confidence 99999999999999999663221 12344444445555554 356789999999999888888
Q ss_pred HHHHHHHHHHH
Q 044796 145 RTILRKLKEMG 155 (186)
Q Consensus 145 ~~l~~~~~~~~ 155 (186)
+.+|..+.++-
T Consensus 1793 y~l~~yy~kll 1803 (2382)
T KOG0890|consen 1793 YHLGKYYDKLL 1803 (2382)
T ss_pred eeHHHHHHHHh
Confidence 88886555443
No 323
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.07 E-value=0.047 Score=41.70 Aligned_cols=84 Identities=12% Similarity=-0.024 Sum_probs=69.2
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhcc-ccccchhh
Q 044796 91 ESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGR-FGMSTDNF 169 (186)
Q Consensus 91 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~-~~~A~~~~ 169 (186)
.-+..|+.|+...+.++..|.....-..+.+.+.+--..|.+++..+|+++..|..-+.-... .+. ++.|...|
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe-----~n~ni~saRalf 163 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFE-----INLNIESARALF 163 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHh-----hccchHHHHHHH
Confidence 456788899999999999999998878888889999999999999999999999988766655 333 77888888
Q ss_pred hhcccCCCCc
Q 044796 170 KAVKDPNTGA 179 (186)
Q Consensus 170 ~~~~~~~~~~ 179 (186)
.+.+..+|++
T Consensus 164 lrgLR~npds 173 (568)
T KOG2396|consen 164 LRGLRFNPDS 173 (568)
T ss_pred HHHhhcCCCC
Confidence 8887555443
No 324
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=96.06 E-value=0.015 Score=27.90 Aligned_cols=29 Identities=34% Similarity=0.359 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796 108 KALIRRAEAHEKLEHFEEAIADMKKILEF 136 (186)
Q Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (186)
+++..+|.+....++|++|+..|.+++++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35667788888888888888888887765
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.06 E-value=0.097 Score=42.72 Aligned_cols=62 Identities=13% Similarity=0.052 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhc---------------------CcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALEL---------------------NPTYMKALIRRAEAHEKLEHFEEAIADMKK 132 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~---------------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (186)
..|.+.|......|+.+.|+.+|..|-.. ...+..+-|.+|.-|...|++.+|+..|.+
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 77888888888888888888888876543 234566889999999999999999998877
Q ss_pred HHh
Q 044796 133 ILE 135 (186)
Q Consensus 133 al~ 135 (186)
|-.
T Consensus 993 Aqa 995 (1416)
T KOG3617|consen 993 AQA 995 (1416)
T ss_pred HHH
Confidence 643
No 326
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=96.02 E-value=0.037 Score=26.21 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=26.4
Q ss_pred HHHHHhHhHHHHcccHHHHHHH--HHHHHhccCC
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQ--YEVALRVASV 38 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~--~~~al~~~p~ 38 (186)
+.++.+|..+...|++++|++. |.-+..++|.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 5678899999999999999999 5588777775
No 327
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=95.84 E-value=0.48 Score=34.77 Aligned_cols=119 Identities=14% Similarity=-0.048 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHh
Q 044796 22 YEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALE 101 (186)
Q Consensus 22 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 101 (186)
.+.-+..|++||+.+|++. ..+..+-.+..+..+.++....+++++.
T Consensus 47 ~E~klsilerAL~~np~~~---------------------------------~L~l~~l~~~~~~~~~~~l~~~we~~l~ 93 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSE---------------------------------RLLLGYLEEGEKVWDSEKLAKKWEELLF 93 (321)
T ss_pred HHHHHHHHHHHHHhCCCCH---------------------------------HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566788999999988832 4444444455566677888899999999
Q ss_pred cCcccHHHHHHHHHHHHH---hcCHHHHHHHHHHHHhcCC-----------CChHHHHHHHHHHHHHHHH--hhcccccc
Q 044796 102 LNPTYMKALIRRAEAHEK---LEHFEEAIADMKKILEFDP-----------SNNQAKRTILRKLKEMGNS--ILGRFGMS 165 (186)
Q Consensus 102 ~~p~~~~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~p-----------~~~~~~~~l~~~~~~~~~~--~~~~~~~A 165 (186)
.+|+++..|..+-..... .-.+......|.+++..-. .-+.....+..++..++.. -.|-.+.|
T Consensus 94 ~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 94 KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 999998887765443332 2246777777777775421 1223344444444444443 27888888
Q ss_pred chhhhhcc
Q 044796 166 TDNFKAVK 173 (186)
Q Consensus 166 ~~~~~~~~ 173 (186)
+..++..+
T Consensus 174 va~~Qa~l 181 (321)
T PF08424_consen 174 VALWQALL 181 (321)
T ss_pred HHHHHHHH
Confidence 88888764
No 328
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.36 Score=36.17 Aligned_cols=83 Identities=20% Similarity=0.150 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHhhhc--cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhc----CHHHHHHHHHHHHhcCCCChHHHH
Q 044796 72 RSICHSNRGICFLKLG--KFEESIKECTKALELNPTYMKALIRRAEAHEKLE----HFEEAIADMKKILEFDPSNNQAKR 145 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~p~~~~~~~ 145 (186)
...+|..+..+..+.+ ++..-++.++++++.+|.+-.+|..+-.+..... ...+-+++..+++.-++.|-.+|.
T Consensus 108 sY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWh 187 (421)
T KOG0529|consen 108 SYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWH 187 (421)
T ss_pred hHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHH
Confidence 4488888888887765 4688999999999999998877776655544333 257788899999999999999999
Q ss_pred HHHHHHHHH
Q 044796 146 TILRKLKEM 154 (186)
Q Consensus 146 ~l~~~~~~~ 154 (186)
....++..+
T Consensus 188 yRs~lL~~l 196 (421)
T KOG0529|consen 188 YRSLLLSTL 196 (421)
T ss_pred HHHHHHHHh
Confidence 998877754
No 329
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.64 E-value=0.026 Score=27.12 Aligned_cols=32 Identities=28% Similarity=0.435 Sum_probs=28.1
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccC
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVAS 37 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 37 (186)
|+.+..+|.+.+..++|++|+.-|.+++++..
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999998743
No 330
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=95.57 E-value=0.6 Score=36.42 Aligned_cols=93 Identities=15% Similarity=-0.050 Sum_probs=60.5
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHH-HHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 75 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA-HEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 75 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
+|+.+-..-.+..-...|...|.++-+....-..++..-|.+ |+..+|..-|.+.|+-.++..++.+.........+..
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~ 447 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSH 447 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 444444444455556677777777776544333455555544 6677888888888888888888888877777777777
Q ss_pred HHHHhhccccccchhhhhc
Q 044796 154 MGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 154 ~~~~~~~~~~~A~~~~~~~ 172 (186)
+++=+.+...|+++
T Consensus 448 -----lNdd~N~R~LFEr~ 461 (656)
T KOG1914|consen 448 -----LNDDNNARALFERV 461 (656)
T ss_pred -----hCcchhHHHHHHHH
Confidence 44444455555554
No 331
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.55 E-value=0.069 Score=45.19 Aligned_cols=138 Identities=14% Similarity=0.109 Sum_probs=101.5
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHh
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFL 84 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 84 (186)
.++..++.|......|.|.+|.+ ..+++.+..+- .....+..+..+..++.++.
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v-------------------------~~~~h~~~~~~~~~La~l~~ 984 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV-------------------------MGVLHPEVASKYRSLAKLSN 984 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh-------------------------hhhcchhHHHHHHHHHHHHh
Confidence 45667778888888888888888 66666654431 11222334588999999999
Q ss_pred hhccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCChHHHHHHH
Q 044796 85 KLGKFEESIKECTKALEL--------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF--------DPSNNQAKRTIL 148 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~ 148 (186)
.++++++|+....++.-+ .|+....+.+++...+..+....|+..+.++..+ .|.......+++
T Consensus 985 ~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle 1064 (1236)
T KOG1839|consen 985 RLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLE 1064 (1236)
T ss_pred hhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHH
Confidence 999999999999888765 3455677888888888888999999999888765 455555566777
Q ss_pred HHHHHHHHHhhccccccchhhhhcc
Q 044796 149 RKLKEMGNSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 149 ~~~~~~~~~~~~~~~~A~~~~~~~~ 173 (186)
.++.. .++++.|+++.+.+.
T Consensus 1065 ~l~~~-----v~e~d~al~~le~A~ 1084 (1236)
T KOG1839|consen 1065 LLLLG-----VEEADTALRYLESAL 1084 (1236)
T ss_pred HHHhh-----HHHHHHHHHHHHHHH
Confidence 66666 677777777777663
No 332
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.48 E-value=0.42 Score=31.65 Aligned_cols=31 Identities=26% Similarity=0.254 Sum_probs=20.9
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccC
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVAS 37 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 37 (186)
-.-|..+..+-..+..++|+..|...-+..-
T Consensus 59 gd~flaAL~lA~~~k~d~Alaaf~~lektg~ 89 (221)
T COG4649 59 GDAFLAALKLAQENKTDDALAAFTDLEKTGY 89 (221)
T ss_pred hHHHHHHHHHHHcCCchHHHHHHHHHHhcCC
Confidence 3445566666777788888888877665543
No 333
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.41 E-value=0.23 Score=35.16 Aligned_cols=71 Identities=23% Similarity=0.235 Sum_probs=59.9
Q ss_pred hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHH
Q 044796 12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEE 91 (186)
Q Consensus 12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 91 (186)
+=..+...++++.|..+-++.+.++|.++ .-+...|.+|.++|.+.-
T Consensus 187 lk~~~~~e~~~~~al~~~~r~l~l~P~dp---------------------------------~eirDrGliY~ql~c~~v 233 (269)
T COG2912 187 LKAALLRELQWELALRVAERLLDLNPEDP---------------------------------YEIRDRGLIYAQLGCYHV 233 (269)
T ss_pred HHHHHHHhhchHHHHHHHHHHHhhCCCCh---------------------------------hhccCcHHHHHhcCCchh
Confidence 33566788999999999999999999932 557779999999999999
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHH
Q 044796 92 SIKECTKALELNPTYMKALIRRAE 115 (186)
Q Consensus 92 A~~~~~~al~~~p~~~~~~~~lg~ 115 (186)
|+..++..++.-|+++.+-...+.
T Consensus 234 Al~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 234 ALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred hHHHHHHHHHhCCCchHHHHHHHH
Confidence 999999999999998877554443
No 334
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=95.29 E-value=0.024 Score=24.55 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECT 97 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~ 97 (186)
.+...+|.++...|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 567889999999999999998875
No 335
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.20 E-value=0.92 Score=36.49 Aligned_cols=115 Identities=16% Similarity=0.093 Sum_probs=73.8
Q ss_pred HHHhHhHHHHcccHHHHHHHHHHHHhccCCCh-hhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796 9 AKLEGNKLFAEGKYEEALLQYEVALRVASVPE-RAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG 87 (186)
Q Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 87 (186)
++--|......+..++|.+++.++++.-.+.. ..-.... ...................+...++.+....+
T Consensus 304 y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~--------~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~ 375 (608)
T PF10345_consen 304 YFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPS--------ESLSEASERIQWLRYLQCYLLFYQIWCNFIRG 375 (608)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCC--------cCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCc
Confidence 44456777778888899999999887543321 0000000 00000000011111122356677888888999
Q ss_pred cHHHHHHHHHHHHhcC---c------ccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 044796 88 KFEESIKECTKALELN---P------TYMKALIRRAEAHEKLEHFEEAIADMK 131 (186)
Q Consensus 88 ~~~~A~~~~~~al~~~---p------~~~~~~~~lg~~~~~~g~~~~A~~~~~ 131 (186)
++.+|....+...... | ..+..++..|..+...|+.+.|+..|.
T Consensus 376 ~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 376 DWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred CHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 9999988888777542 2 247789999999999999999999998
No 336
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.84 Score=35.92 Aligned_cols=127 Identities=13% Similarity=0.074 Sum_probs=84.0
Q ss_pred ccHHHHHHHHHHHHhccCCChhhhhcc--chhhhh-cCc----hhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHH
Q 044796 20 GKYEEALLQYEVALRVASVPERAESAS--APEAKE-GQS----ASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEES 92 (186)
Q Consensus 20 ~~~~~A~~~~~~al~~~p~~~~~~~~~--~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 92 (186)
+...-++..+...+.++|.++...... +..... ... ......+...+... .+..++|......|....+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~L~~ale~~~~~~~~ 120 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENC----PAVQNLAAALELDGLQFLA 120 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccc----hHHHHHHHHHHHhhhHHHH
Confidence 334447777777888888888775444 222221 111 11222334444443 7778888777766665555
Q ss_pred HHHH-HHHHhcCcccHHHHHHH------HHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 044796 93 IKEC-TKALELNPTYMKALIRR------AEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRK 150 (186)
Q Consensus 93 ~~~~-~~al~~~p~~~~~~~~l------g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 150 (186)
+..+ .-+....|++......+ |..+..+|+..++.....++..+.|.++.+...+...
T Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 121 LADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 5444 44888899887766666 8888899999999999999999999987765555443
No 337
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.18 E-value=0.24 Score=35.41 Aligned_cols=77 Identities=25% Similarity=0.390 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchh
Q 044796 89 FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDN 168 (186)
Q Consensus 89 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~ 168 (186)
|..=+....++++. ....++..++..+...|+++.+...+++.+..+|.+-.+|..+-..+.. .|+...|+..
T Consensus 137 f~~WV~~~R~~l~e--~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-----~g~~~~ai~~ 209 (280)
T COG3629 137 FDEWVLEQRRALEE--LFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-----NGRQSAAIRA 209 (280)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-----cCCchHHHHH
Confidence 44445555555542 4567888999999999999999999999999999999999999988888 8888888888
Q ss_pred hhhc
Q 044796 169 FKAV 172 (186)
Q Consensus 169 ~~~~ 172 (186)
|++.
T Consensus 210 y~~l 213 (280)
T COG3629 210 YRQL 213 (280)
T ss_pred HHHH
Confidence 8665
No 338
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=95.06 E-value=1.5 Score=35.39 Aligned_cols=140 Identities=13% Similarity=0.084 Sum_probs=86.8
Q ss_pred hHHHHHHHhHhHHH-HcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLF-AEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC 82 (186)
Q Consensus 4 ~~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 82 (186)
..+...+.+|.+++ ...+++.|..++++++.+...+ ........+.+.++.+
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~---------------------------~~~d~k~~~~~ll~~i 109 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERH---------------------------RLTDLKFRCQFLLARI 109 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc---------------------------chHHHHHHHHHHHHHH
Confidence 45777888888887 6778999999999888776541 1222234566677888
Q ss_pred HhhhccHHHHHHHHHHHHhcCcc----cHHHHHHHH--HHHHHhcCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHH
Q 044796 83 FLKLGKFEESIKECTKALELNPT----YMKALIRRA--EAHEKLEHFEEAIADMKKILEFD--PSNNQAKRTILRKLKEM 154 (186)
Q Consensus 83 ~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~lg--~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~ 154 (186)
+.+.+... |...+++.++...+ .....+++- ......+++..|++.++...... +.++.+... ..+...+
T Consensus 110 ~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~-~~l~~~~ 187 (608)
T PF10345_consen 110 YFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL-ASLSEAL 187 (608)
T ss_pred HHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH-HHHHHHH
Confidence 88887777 99999999986444 122222222 22223379999999999998876 455544332 2222222
Q ss_pred HHHhhccccccchhhhhc
Q 044796 155 GNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 155 ~~~~~~~~~~A~~~~~~~ 172 (186)
-....+..+++++....+
T Consensus 188 l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 188 LHLRRGSPDDVLELLQRA 205 (608)
T ss_pred HHhcCCCchhHHHHHHHH
Confidence 222244455555555444
No 339
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=95.05 E-value=0.11 Score=35.00 Aligned_cols=61 Identities=13% Similarity=0.110 Sum_probs=47.1
Q ss_pred hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796 3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC 82 (186)
Q Consensus 3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 82 (186)
++.++..+.+|..|. ..+.++++..+.+++++.+.+. ..++..+..++.+
T Consensus 138 l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~-----------------------------~~n~eil~sLas~ 187 (203)
T PF11207_consen 138 LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDD-----------------------------NFNPEILKSLASI 187 (203)
T ss_pred CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCC-----------------------------CCCHHHHHHHHHH
Confidence 466777888886554 7789999999999999877621 2245888899999
Q ss_pred HhhhccHHHHH
Q 044796 83 FLKLGKFEESI 93 (186)
Q Consensus 83 ~~~~~~~~~A~ 93 (186)
+.++|+++.|-
T Consensus 188 ~~~~~~~e~AY 198 (203)
T PF11207_consen 188 YQKLKNYEQAY 198 (203)
T ss_pred HHHhcchhhhh
Confidence 99999998874
No 340
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.02 E-value=0.16 Score=36.09 Aligned_cols=62 Identities=15% Similarity=0.050 Sum_probs=48.7
Q ss_pred HHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc
Q 044796 25 ALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNP 104 (186)
Q Consensus 25 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 104 (186)
|..+|.+|+.+.|... ..|..+|.++...|+.=.|+-+|-+++-...
T Consensus 1 A~~~Y~~A~~l~P~~G---------------------------------~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~ 47 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNG---------------------------------NPYNQLAVLASYQGDDLDAVYYYIRSLAVRI 47 (278)
T ss_dssp HHHHHHHHHHH-TTBS---------------------------------HHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB
T ss_pred CHHHHHHHHHhCCCCC---------------------------------CcccchhhhhccccchHHHHHHHHHHHhcCC
Confidence 6889999999999933 7888889888888998899999999987655
Q ss_pred ccHHHHHHHHHHHHH
Q 044796 105 TYMKALIRRAEAHEK 119 (186)
Q Consensus 105 ~~~~~~~~lg~~~~~ 119 (186)
..+.+..++...+.+
T Consensus 48 Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 48 PFPSARENLQKLFEK 62 (278)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 567788888877776
No 341
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.94 E-value=1.1 Score=33.78 Aligned_cols=66 Identities=24% Similarity=0.245 Sum_probs=56.9
Q ss_pred cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 88 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEH--FEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 88 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
-+++-+.....+++.+|+.-.+|+.+..++.+.+. +..-+...+++++.+|.|..+|...-.+...
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~ 157 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQ 157 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHH
Confidence 56778889999999999999999999999997775 5789999999999999999998776654443
No 342
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=94.93 E-value=0.27 Score=35.26 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Q 044796 109 ALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEM 154 (186)
Q Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 154 (186)
.+...+..+...|.+.+|++..++++.++|-+.+.+..+-.++..+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~ 326 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATL 326 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHh
Confidence 3334455566666666666666666666666666666666666663
No 343
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=94.92 E-value=0.12 Score=23.20 Aligned_cols=29 Identities=17% Similarity=0.036 Sum_probs=17.0
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796 121 EHFEEAIADMKKILEFDPSNNQAKRTILR 149 (186)
Q Consensus 121 g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 149 (186)
|+.+.+...|++++...|.++..|.....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 34555666666666666666666655443
No 344
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=94.50 E-value=0.43 Score=30.46 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 044796 107 MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS 157 (186)
Q Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 157 (186)
.......+...+..|++.-|......++..+|++..++...+.++..+|..
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 345566677777788888888888888888888888888888888887664
No 345
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=94.44 E-value=0.9 Score=31.99 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=41.0
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcc------cHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPT------YMKALIRRAEAHEKLEHFEEAIADMKKI 133 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (186)
.+...+|..|+..|++++|+..++.+...... ...++..+..|...+|+.+..+...-+.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55567788888888888888888887654221 2445666777777888877776665444
No 346
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=94.32 E-value=0.32 Score=37.84 Aligned_cols=139 Identities=11% Similarity=-0.037 Sum_probs=82.3
Q ss_pred HHHHhccCCChhhhhccchhhhhcCchh----HHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcc
Q 044796 30 EVALRVASVPERAESASAPEAKEGQSAS----EKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPT 105 (186)
Q Consensus 30 ~~al~~~p~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 105 (186)
++-++.+|.+.++|..+.........+. +...+...|. .+.+|.......+..++|+.....|.++|...=+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~~~~~~R~~YEq~~~~FP~----s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn 85 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQPIDKVRETYEQLVNVFPS----SPRAWKLYIERELASKDFESVEKLFSRCLVKVLN 85 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccCCHHHHHHHHHHHhccCCC----CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 5667778888877777766554443333 3333444443 3488888888888899999999999999875332
Q ss_pred cHHHH-HHHHHHHHHhcCHHHHHHHHHH----H---HhcCCCChHHHHHHHHHHHHHHHH----hhccccccchhhhhcc
Q 044796 106 YMKAL-IRRAEAHEKLEHFEEAIADMKK----I---LEFDPSNNQAKRTILRKLKEMGNS----ILGRFGMSTDNFKAVK 173 (186)
Q Consensus 106 ~~~~~-~~lg~~~~~~g~~~~A~~~~~~----a---l~~~p~~~~~~~~l~~~~~~~~~~----~~~~~~~A~~~~~~~~ 173 (186)
.+.| ..+..+....|+...+....-+ + +-.++....+|......+...-.. -..+.+.-.+.|++++
T Consensus 86 -lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral 164 (656)
T KOG1914|consen 86 -LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL 164 (656)
T ss_pred -HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh
Confidence 3333 3345555555554443332222 2 235677777888777665432211 1235555556666664
No 347
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=94.18 E-value=0.18 Score=22.50 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=25.9
Q ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHH
Q 044796 87 GKFEESIKECTKALELNPTYMKALIRRAEA 116 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 116 (186)
|+++.|...|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467899999999999999999999877654
No 348
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.14 E-value=1.3 Score=37.60 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=66.2
Q ss_pred hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhC------CCcchhHHHHH
Q 044796 2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVA------PAPEMAELRSI 74 (186)
Q Consensus 2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~~ 74 (186)
+.+.+..|.++|....+.|...+|++.|-++ +++..+....... ..+..++..+.+. ..|.......-
T Consensus 1100 ~~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~ 1174 (1666)
T KOG0985|consen 1100 RCNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIF 1174 (1666)
T ss_pred hhCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHH
Confidence 3456788999999999999999999998763 3333333332222 2233333322211 11111110001
Q ss_pred HH---------------------HHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796 75 CH---------------------SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKI 133 (186)
Q Consensus 75 ~~---------------------~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (186)
++ ...|.-++..|.|+.|.-+|. +..-|..++..+..+|+|+.|.+.-++|
T Consensus 1175 AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 11 112222333344444433332 2345677899999999999999988887
Q ss_pred H
Q 044796 134 L 134 (186)
Q Consensus 134 l 134 (186)
-
T Consensus 1247 n 1247 (1666)
T KOG0985|consen 1247 N 1247 (1666)
T ss_pred c
Confidence 4
No 349
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=94.02 E-value=1.3 Score=30.62 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=52.6
Q ss_pred HHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 044796 81 ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNN 141 (186)
Q Consensus 81 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 141 (186)
.-+.+.+...+|+...+.-++.+|.+......+=.++.-.|++++|+..++-+-++.|++.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3455677889999999999999999988888888888899999999999999999998864
No 350
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.75 E-value=1.3 Score=29.45 Aligned_cols=142 Identities=11% Similarity=0.115 Sum_probs=85.1
Q ss_pred HhHHHHcccHHHHHHHHHHHHhccCCCh--hhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHH
Q 044796 13 GNKLFAEGKYEEALLQYEVALRVASVPE--RAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFE 90 (186)
Q Consensus 13 g~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 90 (186)
|..+++.+.-.++-..|..+|++-..+. +++..+..+.. .....+..-+....|.+..+.|+..
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA~~~k~d~Alaaf~~lek--------------tg~g~YpvLA~mr~at~~a~kgdta 111 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLAQENKTDDALAAFTDLEK--------------TGYGSYPVLARMRAATLLAQKGDTA 111 (221)
T ss_pred eeehhcccccccchHHHHHHHHHHHcCCchHHHHHHHHHHh--------------cCCCcchHHHHHHHHHHHhhcccHH
Confidence 4456677777777788888887654421 22211111110 0111122345566777888888889
Q ss_pred HHHHHHHHHHhcCccc----HHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCCCChHHHHHHHHHHHHHHHHhhcccccc
Q 044796 91 ESIKECTKALELNPTY----MKALIRRAEAHEKLEHFEEAIADMKKIL-EFDPSNNQAKRTILRKLKEMGNSILGRFGMS 165 (186)
Q Consensus 91 ~A~~~~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A 165 (186)
.|+..|..+-.-.|-- ..+...-+.++...|.|++-..-.+..- .-+|--..+...|+..-.+ .|++..|
T Consensus 112 ~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~k-----agd~a~A 186 (221)
T COG4649 112 AAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYK-----AGDFAKA 186 (221)
T ss_pred HHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHh-----ccchHHH
Confidence 9999988876644321 2245566777888888887655544432 2344445666677755555 8888888
Q ss_pred chhhhhcc
Q 044796 166 TDNFKAVK 173 (186)
Q Consensus 166 ~~~~~~~~ 173 (186)
...|.++.
T Consensus 187 ~~~F~qia 194 (221)
T COG4649 187 KSWFVQIA 194 (221)
T ss_pred HHHHHHHH
Confidence 88887764
No 351
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.59 E-value=1 Score=33.96 Aligned_cols=111 Identities=14% Similarity=0.054 Sum_probs=77.5
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL 86 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 86 (186)
..+..+|.-|...|+++.|+++|.++-....+- . -...++.+.-.+-.-+
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~--------------------------k----hvInm~ln~i~VSI~~ 200 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSA--------------------------K----HVINMCLNLILVSIYM 200 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch--------------------------H----HHHHHHHHHHHHHHhh
Confidence 456778889999999999999999965554441 1 1236777777777778
Q ss_pred ccHHHHHHHHHHHHhcC---c-----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--------cCCCChHHHHHH
Q 044796 87 GKFEESIKECTKALELN---P-----TYMKALIRRAEAHEKLEHFEEAIADMKKILE--------FDPSNNQAKRTI 147 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~~---p-----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------~~p~~~~~~~~l 147 (186)
|+|.....+-.+|...- . -.+.+....|.+...++.|..|..+|-.+.. +.|.+..++..+
T Consensus 201 ~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggL 277 (466)
T KOG0686|consen 201 GNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGL 277 (466)
T ss_pred cchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhh
Confidence 88888777777776641 0 0133556678888888899999999887753 235555555444
No 352
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.51 E-value=0.2 Score=36.29 Aligned_cols=76 Identities=12% Similarity=0.035 Sum_probs=56.2
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK 85 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (186)
+..|...+.-..+.|.+.+--..|.++++.+|.+.+.|... -+.-+..
T Consensus 107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~--------------------------------c~~e~~~ 154 (435)
T COG5191 107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYC--------------------------------CAFELFE 154 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeee--------------------------------ccchhhh
Confidence 44566666666677788888888888999988866555321 2233445
Q ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHH
Q 044796 86 LGKFEESIKECTKALELNPTYMKALIRR 113 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~~~~~~~~l 113 (186)
-++++.+...|.+++..+|+.|..|+..
T Consensus 155 ~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 155 IANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred hccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 6788999999999999999999887653
No 353
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.39 E-value=3.2 Score=32.83 Aligned_cols=165 Identities=13% Similarity=0.097 Sum_probs=103.8
Q ss_pred HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhh-hhcCchhHHHhhCCCcch-hHHHHHHHHHHHHHHhh
Q 044796 8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEA-KEGQSASEKKEVAPAPEM-AELRSICHSNRGICFLK 85 (186)
Q Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~ 85 (186)
.|.....--...|+++...-.|++++-........|...+.-. ..++...+..++...... .+..+.....-+...-.
T Consensus 299 nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~ 378 (577)
T KOG1258|consen 299 NWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES 378 (577)
T ss_pred HHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh
Confidence 3444455556889999999999999988888888888777554 224443333333222211 12234666667777778
Q ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHH---HHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccc
Q 044796 86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA---DMKKILEFDPSNNQAKRTILRKLKEMGNSILGRF 162 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~---~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~ 162 (186)
.|++..|...+++..+.-|+...+-........++|..+.+.. .+..... ...+......+..-+..+...+.++.
T Consensus 379 ~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~~~~~~i~~~l~~~~~r~~~~i~~d~ 457 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-GKENNGILEKLYVKFARLRYKIREDA 457 (577)
T ss_pred hccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-cccCcchhHHHHHHHHHHHHHHhcCH
Confidence 8999999999999998889888887777778888888887773 2222222 22233333333333333334445555
Q ss_pred cccchhhhhcc
Q 044796 163 GMSTDNFKAVK 173 (186)
Q Consensus 163 ~~A~~~~~~~~ 173 (186)
+.|...+..+.
T Consensus 458 ~~a~~~l~~~~ 468 (577)
T KOG1258|consen 458 DLARIILLEAN 468 (577)
T ss_pred HHHHHHHHHhh
Confidence 56666555553
No 354
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=93.24 E-value=0.55 Score=29.97 Aligned_cols=51 Identities=18% Similarity=0.085 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE 124 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 124 (186)
......+...+..|++.-|....+.++..+|++..+...++.++..+|.-.
T Consensus 71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 556677888889999999999999999999999999999999998887654
No 355
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.24 E-value=0.46 Score=34.12 Aligned_cols=62 Identities=21% Similarity=0.177 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE 135 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (186)
......+..|...|.+.+|++..+++++.+|-+...+..+-.++..+||--.+...|++.-+
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34445678888999999999999999999999999999999999999999999988887643
No 356
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=93.16 E-value=0.32 Score=24.19 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796 111 IRRAEAHEKLEHFEEAIADMKKILE 135 (186)
Q Consensus 111 ~~lg~~~~~~g~~~~A~~~~~~al~ 135 (186)
+.+|.+|..+|+++.|...++.++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5688999999999999999999985
No 357
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=92.90 E-value=1.2 Score=36.04 Aligned_cols=81 Identities=16% Similarity=0.239 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL 151 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 151 (186)
...++.++|..+..+..|++|.++|...-.. -+...|++.+.+|++ ++.....-|++....-.++..+
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~--------e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf 862 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGDT--------ENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMF 862 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccch--------HhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHH
Confidence 3478899999999999999999888775432 123445555555443 2333333455555555555555
Q ss_pred HHHHHHhhccccccchhh
Q 044796 152 KEMGNSILGRFGMSTDNF 169 (186)
Q Consensus 152 ~~~~~~~~~~~~~A~~~~ 169 (186)
.. .|.-++|.+.|
T Consensus 863 ~s-----vGMC~qAV~a~ 875 (1189)
T KOG2041|consen 863 TS-----VGMCDQAVEAY 875 (1189)
T ss_pred Hh-----hchHHHHHHHH
Confidence 54 44444444444
No 358
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=92.82 E-value=1.1 Score=38.41 Aligned_cols=109 Identities=15% Similarity=0.116 Sum_probs=76.6
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
+.+..+..++..+...|+.++|+..-.++.-+.... .....+.....+.+++...
T Consensus 971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~-------------------------~g~ds~~t~~~y~nlal~~ 1025 (1236)
T KOG1839|consen 971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERV-------------------------LGKDSPNTKLAYGNLALYE 1025 (1236)
T ss_pred hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechh-------------------------ccCCCHHHHHHhhHHHHHH
Confidence 345666777777788888888877766665443320 1222233446777888888
Q ss_pred hhhccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796 84 LKLGKFEESIKECTKALEL--------NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (186)
+..++...|+..+.++..+ .|.-.....+++.++...++++.|+++.+.|+..+
T Consensus 1026 f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1026 FAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred HhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888765 34444556788888888899999999999998754
No 359
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=92.73 E-value=0.45 Score=26.12 Aligned_cols=33 Identities=33% Similarity=0.367 Sum_probs=28.6
Q ss_pred hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhc
Q 044796 3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRV 35 (186)
Q Consensus 3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 35 (186)
++.+-.+...|...=..|++++|+.+|.+++..
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 356778888999999999999999999999875
No 360
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=92.63 E-value=0.43 Score=26.76 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=27.1
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhc
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRV 35 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 35 (186)
+.|..+...|..+-+.|++++|+.+|+++++.
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~ 35 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEV 35 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 35667788888899999999999999998875
No 361
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.56 E-value=0.19 Score=38.65 Aligned_cols=51 Identities=16% Similarity=0.135 Sum_probs=32.0
Q ss_pred hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796 85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE 135 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (186)
..|+...|-+-...++...|.+|......+.++..+|+|+.++..+..+-.
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~ 351 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEK 351 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhh
Confidence 456666666666666666666666666666666666666666665554433
No 362
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.54 E-value=4.9 Score=33.52 Aligned_cols=163 Identities=11% Similarity=-0.035 Sum_probs=93.8
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChh-hhhccchhh-hhcCchhHHHhhCCCcchhHH-HHHHHHHHHHH
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPER-AESASAPEA-KEGQSASEKKEVAPAPEMAEL-RSICHSNRGIC 82 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~ 82 (186)
.+.+..-+..+...|...+|+.+.-.| -+|.... .....+... ...........+...|...-. .+......+..
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~ 424 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWL 424 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHH
Confidence 445566666777788888888775432 1222111 111111111 112222222223333322211 24566667777
Q ss_pred HhhhccHHHHHHHHHHHHhcCcc---------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 83 FLKLGKFEESIKECTKALELNPT---------YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 83 ~~~~~~~~~A~~~~~~al~~~p~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
.....++.+|.....++...-|. ...+--..|.+....|+++.|.+..+.++..-|.+..... ..++..
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r--~~~~sv 502 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSR--IVALSV 502 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhh--hhhhhh
Confidence 77888898888888777654332 1345556788899999999999999999998887643322 223333
Q ss_pred HHH--Hhhccccccchhhhhc
Q 044796 154 MGN--SILGRFGMSTDNFKAV 172 (186)
Q Consensus 154 ~~~--~~~~~~~~A~~~~~~~ 172 (186)
+|. ...|++++|..+...+
T Consensus 503 ~~~a~~~~G~~~~Al~~~~~a 523 (894)
T COG2909 503 LGEAAHIRGELTQALALMQQA 523 (894)
T ss_pred hhHHHHHhchHHHHHHHHHHH
Confidence 333 2578888777766544
No 363
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.49 E-value=3.7 Score=31.21 Aligned_cols=68 Identities=15% Similarity=0.120 Sum_probs=45.8
Q ss_pred HHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccH
Q 044796 10 KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKF 89 (186)
Q Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (186)
..+..++.-.|+|..|++.++- ++++.. ..+ ....+-....++..|-+|+-+++|
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~-idl~~~--~l~----------------------~~V~~~~is~~YyvGFaylMlrRY 180 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLEN-IDLNKK--GLY----------------------TKVPACHISTYYYVGFAYLMLRRY 180 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhc-cCcccc--hhh----------------------ccCcchheehHHHHHHHHHHHHHH
Confidence 3445667778999998888753 222222 111 111112337889999999999999
Q ss_pred HHHHHHHHHHHhc
Q 044796 90 EESIKECTKALEL 102 (186)
Q Consensus 90 ~~A~~~~~~al~~ 102 (186)
.+|+..|...+-.
T Consensus 181 ~DAir~f~~iL~y 193 (404)
T PF10255_consen 181 ADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998853
No 364
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.43 E-value=5.7 Score=33.16 Aligned_cols=125 Identities=18% Similarity=0.071 Sum_probs=83.8
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL 86 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 86 (186)
......+.......++.+|..+..++...-|... .+......+......|.+....
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~------------------------~~~~~~l~ae~~aL~a~val~~ 471 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPM------------------------HSRQGDLLAEFQALRAQVALNR 471 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCc------------------------ccchhhHHHHHHHHHHHHHHhc
Confidence 3444556666677777777777777655443310 1112222345566678888999
Q ss_pred ccHHHHHHHHHHHHhcCccc-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----CCChHH--HHHHHHHHHHHH
Q 044796 87 GKFEESIKECTKALELNPTY-----MKALIRRAEAHEKLEHFEEAIADMKKILEFD----PSNNQA--KRTILRKLKEMG 155 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~~p~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~--~~~l~~~~~~~~ 155 (186)
|++++|+...+.++..-|.+ ..++...|.+..-.|++++|+.+...+.+.. ...-.+ ....+.++...|
T Consensus 472 ~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 472 GDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred CCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999886654 4567788999999999999999999988773 222222 333355556644
No 365
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=92.38 E-value=4 Score=31.25 Aligned_cols=122 Identities=24% Similarity=0.325 Sum_probs=59.9
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
.........|..++..|+|.+|+..|+.+|-.-|-..- .......+..+.+.... -|.+|...
T Consensus 202 ~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv--------~~~~E~~e~~eli~icr---------EYilgl~i 264 (422)
T PF06957_consen 202 SSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVV--------ESREEEDEAKELIEICR---------EYILGLSI 264 (422)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--B--------SSCHHHHHHHHHHHHHH---------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeee--------cCHHHHHHHHHHHHHHH---------HHHHHHHH
Confidence 34445677899999999999999999999876443100 00000011111111100 11122111
Q ss_pred -hhh-----ccHHHHHHHHHHHH-----hcCcccHHHHHHHHHH-HHHhcCHHHHHHHHHHHHhcCCCChH
Q 044796 84 -LKL-----GKFEESIKECTKAL-----ELNPTYMKALIRRAEA-HEKLEHFEEAIADMKKILEFDPSNNQ 142 (186)
Q Consensus 84 -~~~-----~~~~~A~~~~~~al-----~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~ 142 (186)
... ...++....++-+. ++.|.+...-++.|+. .++.++|..|...-++.|++.|....
T Consensus 265 El~Rr~l~~~~~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~ 335 (422)
T PF06957_consen 265 ELERRELPKDPVEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV 335 (422)
T ss_dssp HHHHCTS-TTTHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred HHHHHhccccchhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence 111 11222223333322 2334443333344433 56889999999999999999987654
No 366
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=92.25 E-value=2 Score=30.31 Aligned_cols=68 Identities=19% Similarity=0.139 Sum_probs=50.3
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK 85 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (186)
.....++|..++..|+|++|+.+|+.+........ -......+...+..|+..
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg---------------------------W~~l~~~~l~~l~~Ca~~ 230 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG---------------------------WWSLLTEVLWRLLECAKR 230 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC---------------------------cHHHHHHHHHHHHHHHHH
Confidence 34567899999999999999999999966544311 111234677788899999
Q ss_pred hccHHHHHHHHHHHH
Q 044796 86 LGKFEESIKECTKAL 100 (186)
Q Consensus 86 ~~~~~~A~~~~~~al 100 (186)
.|+.+..+...-+.+
T Consensus 231 ~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 231 LGDVEDYLTTSLELL 245 (247)
T ss_pred hCCHHHHHHHHHHHh
Confidence 999988877765544
No 367
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.18 E-value=0.47 Score=35.83 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcC---------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796 75 CHSNRGICFLKLGKFEESIKECTKALELN---------PTYMKALIRRAEAHEKLEHFEEAIADMKKILE 135 (186)
Q Consensus 75 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~---------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (186)
....+..++.-+|+|..|++.++- +.++ +-+...++..|.+|.-+++|.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666888889999999988755 2222 22456789999999999999999999998874
No 368
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.13 E-value=2 Score=27.14 Aligned_cols=118 Identities=19% Similarity=0.182 Sum_probs=62.6
Q ss_pred HHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhC-CCcchhHHHHHHHHHHHHHHhhhccHHHHHH
Q 044796 16 LFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVA-PAPEMAELRSICHSNRGICFLKLGKFEESIK 94 (186)
Q Consensus 16 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 94 (186)
+...+.+...+.+++..+..++.++..+..+..++...+.......+. ...... .-..+..+.+.+-+++++.
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~~~ll~~l~~~~~~yd------~~~~~~~c~~~~l~~~~~~ 90 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDPQKEIERLDNKSNHYD------IEKVGKLCEKAKLYEEAVE 90 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCHHHHHHHHHhccccCC------HHHHHHHHHHcCcHHHHHH
Confidence 345678999999999999988776666666665554333333333333 111111 1112333344445555555
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Q 044796 95 ECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKL 151 (186)
Q Consensus 95 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 151 (186)
.+.+. ..+..+. -.+....++++.|++++.+ +.+++.|..++..+
T Consensus 91 l~~k~----~~~~~Al---~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~ 135 (140)
T smart00299 91 LYKKD----GNFKDAI---VTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL 135 (140)
T ss_pred HHHhh----cCHHHHH---HHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 55442 1112221 1122233677777777765 34666777666544
No 369
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.93 E-value=4.6 Score=31.26 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=31.8
Q ss_pred hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796 85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE 135 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (186)
+.|+.+.|.+..+ ..+++..|..+|......|+++-|..+|.++-.
T Consensus 330 ~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 330 QLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred hcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 4566666644332 234677888899999999999999888888743
No 370
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.82 E-value=0.56 Score=23.30 Aligned_cols=26 Identities=12% Similarity=0.267 Sum_probs=23.6
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHhc
Q 044796 77 SNRGICFLKLGKFEESIKECTKALEL 102 (186)
Q Consensus 77 ~~~a~~~~~~~~~~~A~~~~~~al~~ 102 (186)
..+|.+|..+|+.+.|...++.++..
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 56899999999999999999999964
No 371
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.76 E-value=2.7 Score=32.51 Aligned_cols=44 Identities=16% Similarity=-0.026 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE 125 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 125 (186)
..|..+|...+..|+++-|..+|.++-.. ..+..++...|+.+.
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~--------~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKAKDF--------SGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHCT-H--------HHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhcCc--------cccHHHHHHhCCHHH
Confidence 68899999999999999998888875432 234445555555543
No 372
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=91.67 E-value=1.4 Score=29.74 Aligned_cols=52 Identities=23% Similarity=0.137 Sum_probs=45.2
Q ss_pred ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 044796 87 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS 139 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 139 (186)
+..+..++..++.+...| ++..+..++.++...|+.++|.+...++..+.|.
T Consensus 125 ~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 125 EMLEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 345566777888888888 6889999999999999999999999999999994
No 373
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.65 E-value=4.8 Score=30.59 Aligned_cols=67 Identities=12% Similarity=0.099 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHh--c--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALE--L--NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN 140 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 140 (186)
...+.+-..|..-+.|+.|.....++.- . +......++.+|.+..-+++|..|.++|-+|+...|..
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~ 280 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQH 280 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcch
Confidence 4555666777778888888777666551 1 11345567778888888889999999999998888874
No 374
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=91.41 E-value=3.3 Score=32.78 Aligned_cols=95 Identities=13% Similarity=0.005 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD-PSNNQAKRTILRKLK 152 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 152 (186)
..|..........|+++.....|++++---....+.|...+......|+.+-|-..+.++.++. |..+.++..-+..-.
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e 377 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE 377 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence 4455555555667777777777777776666677777777777777777777777666666653 445555555554444
Q ss_pred HHHHHhhccccccchhhhhcc
Q 044796 153 EMGNSILGRFGMSTDNFKAVK 173 (186)
Q Consensus 153 ~~~~~~~~~~~~A~~~~~~~~ 173 (186)
. .|++..|+..++.+.
T Consensus 378 ~-----~~n~~~A~~~lq~i~ 393 (577)
T KOG1258|consen 378 S-----NGNFDDAKVILQRIE 393 (577)
T ss_pred h-----hccHHHHHHHHHHHH
Confidence 4 566666666666654
No 375
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=91.40 E-value=1.6 Score=24.56 Aligned_cols=28 Identities=25% Similarity=0.197 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHh
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALE 101 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~ 101 (186)
..+...|.-+-+.|++++|+.+|+++++
T Consensus 7 ~~~a~~AVe~D~~gr~~eAi~~Y~~aIe 34 (75)
T cd02682 7 RKYAINAVKAEKEGNAEDAITNYKKAIE 34 (75)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4555666666667777766666666554
No 376
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=91.21 E-value=4.8 Score=29.83 Aligned_cols=38 Identities=18% Similarity=-0.006 Sum_probs=30.0
Q ss_pred hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchh
Q 044796 12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPE 49 (186)
Q Consensus 12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 49 (186)
+-...++..+..+-++.-..+++++|....++..++..
T Consensus 190 IMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE 227 (556)
T KOG3807|consen 190 IMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE 227 (556)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh
Confidence 33455677788888999999999999988888877743
No 377
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=90.76 E-value=4.2 Score=28.36 Aligned_cols=104 Identities=15% Similarity=0.063 Sum_probs=58.1
Q ss_pred HHHcccHHHHHHHHHHHHhccCCChhhhhc-cchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccH-HHH-
Q 044796 16 LFAEGKYEEALLQYEVALRVASVPERAESA-SAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKF-EES- 92 (186)
Q Consensus 16 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~A- 92 (186)
.+..|+|+.|+....-+|+.+-.-|+-+.. .+... .+-....+......|+. +-.
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v----------------------aeev~~~A~~~~~ag~~~e~~~ 150 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV----------------------AEEVANAALKAASAGESVEPYF 150 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH----------------------HHHHHHHHHHHHHcCCCCChHH
Confidence 367899999999999999987654433321 11111 12222233333333331 111
Q ss_pred HHHHHHHHh-c-Cccc--HHHHHHHHHHHH---------HhcCHHHHHHHHHHHHhcCCCCh
Q 044796 93 IKECTKALE-L-NPTY--MKALIRRAEAHE---------KLEHFEEAIADMKKILEFDPSNN 141 (186)
Q Consensus 93 ~~~~~~al~-~-~p~~--~~~~~~lg~~~~---------~~g~~~~A~~~~~~al~~~p~~~ 141 (186)
...+..... . -|+. ...+-..|..+. ..++...|+.++++|+.++|+.+
T Consensus 151 ~~~~~~l~~~~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 151 LRVFLDLTTEWDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 111222211 1 1222 345666677773 45688899999999999999854
No 378
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=90.71 E-value=9.4 Score=35.59 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=60.1
Q ss_pred hhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796 68 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137 (186)
Q Consensus 68 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (186)
.......+|...|.+.+..|+++.|-...-.|.+.. -+.++...|..+...|+...|+..+++.++.+
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 334456999999999999999999999988888765 67899999999999999999999999999764
No 379
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=90.13 E-value=1.1 Score=25.16 Aligned_cols=34 Identities=35% Similarity=0.320 Sum_probs=29.7
Q ss_pred hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhcc
Q 044796 3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVA 36 (186)
Q Consensus 3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 36 (186)
++.+..+...|...-..|++++|+.+|.++++..
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l 36 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYF 36 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5678888999999999999999999999998753
No 380
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=89.55 E-value=1.3 Score=24.99 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=27.6
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhcc
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVA 36 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 36 (186)
.|-.+...|...=..|++++|+.+|..+++..
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l 36 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLL 36 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 46677788888889999999999999999864
No 381
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.54 E-value=8.3 Score=29.92 Aligned_cols=148 Identities=12% Similarity=-0.079 Sum_probs=87.4
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCc--------hhHHHh---------------h
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQS--------ASEKKE---------------V 62 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~--------~~~~~~---------------~ 62 (186)
++.|+.-..-+...++-+.|+....+++...|.. ...++........ +....+ .
T Consensus 302 ~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL---~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~ 378 (660)
T COG5107 302 EEVWFDYSEYLIGISDKQKALKTVERGIEMSPSL---TMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKV 378 (660)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHhcccCCCch---heeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccc
Confidence 5667766667778889999999999998888871 1222211111000 000000 0
Q ss_pred CCCcchhH--------HHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHH-HHHhcCHHHHHHHHHHH
Q 044796 63 APAPEMAE--------LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA-HEKLEHFEEAIADMKKI 133 (186)
Q Consensus 63 ~~~~~~~~--------~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~a 133 (186)
...+...+ ...-+|+..-..-.+..-.+.|...|.++-+..-..+.++..-|.+ ++..|++.-|...|+-.
T Consensus 379 D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelG 458 (660)
T COG5107 379 DNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELG 458 (660)
T ss_pred cCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHH
Confidence 00010000 0112333333344444456778888888776543445555555554 77889999999999999
Q ss_pred HhcCCCChHHHHHHHHHHHHHHH
Q 044796 134 LEFDPSNNQAKRTILRKLKEMGN 156 (186)
Q Consensus 134 l~~~p~~~~~~~~l~~~~~~~~~ 156 (186)
+...|+++-..+..-..+..+++
T Consensus 459 l~~f~d~~~y~~kyl~fLi~ind 481 (660)
T COG5107 459 LLKFPDSTLYKEKYLLFLIRIND 481 (660)
T ss_pred HHhCCCchHHHHHHHHHHHHhCc
Confidence 99999988777766666777444
No 382
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=89.27 E-value=3.4 Score=25.01 Aligned_cols=37 Identities=22% Similarity=0.197 Sum_probs=31.4
Q ss_pred hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCC
Q 044796 2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASV 38 (186)
Q Consensus 2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 38 (186)
+.+++......|...+..|+++.|.+...++-+..+.
T Consensus 55 r~~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~ 91 (108)
T PF07219_consen 55 RRRKAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDN 91 (108)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 3467888889999999999999999999999776444
No 383
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=89.12 E-value=1.4 Score=24.72 Aligned_cols=35 Identities=26% Similarity=0.177 Sum_probs=30.2
Q ss_pred hhhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhcc
Q 044796 2 ALNEANEAKLEGNKLFAEGKYEEALLQYEVALRVA 36 (186)
Q Consensus 2 ~~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 36 (186)
.++.+..+...|...=..|++++|+.+|..+++..
T Consensus 2 ~l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~ 36 (75)
T cd02684 2 SLEKAIALVVQAVKKDQRGDAAAALSLYCSALQYF 36 (75)
T ss_pred cHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 45678888899988889999999999999998764
No 384
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.01 E-value=7.7 Score=28.85 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHh
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALE 101 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~ 101 (186)
...+.+|.-|+...+++.|...|+++.+
T Consensus 126 ~~n~YkaLNYm~~nD~~~ArVEfnRan~ 153 (449)
T COG3014 126 LINYYKALNYMLLNDSAKARVEFNRANE 153 (449)
T ss_pred HHHHHHHhhHHHhcchhhhHHHHHHHHH
Confidence 3445567777777777777666666554
No 385
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.89 E-value=10 Score=29.95 Aligned_cols=65 Identities=23% Similarity=0.097 Sum_probs=44.7
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcC---cc----cHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCC
Q 044796 75 CHSNRGICFLKLGKFEESIKECTKALELN---PT----YMKALIRRAEAHEKLEH-FEEAIADMKKILEFDPS 139 (186)
Q Consensus 75 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~---p~----~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~ 139 (186)
-+..+|.++..+|+...|..+|+..++.. .. .|-++|.+|..+..+|. ..++..++.+|-....+
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 34556777777787777777777777321 11 25677788888777777 77777777777766533
No 386
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=88.89 E-value=0.6 Score=34.94 Aligned_cols=56 Identities=14% Similarity=0.280 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh-------hccccccchhhhhcccCCCCcc
Q 044796 123 FEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSI-------LGRFGMSTDNFKAVKDPNTGAY 180 (186)
Q Consensus 123 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-------~~~~~~A~~~~~~~~~~~~~~~ 180 (186)
...|+.++++|.. .++|+.|..+|.+++.+|+.. ..-|.+|...+++|-+...+-|
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at~GKy 396 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKATNGKY 396 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhccccch
Confidence 4567788888875 677899999999999999973 3346777887777755555544
No 387
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=88.87 E-value=1.4 Score=24.92 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=27.4
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhcc
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVA 36 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 36 (186)
..+-.+...|...=..|++++|+.+|.++|+..
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l 36 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLL 36 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 346677888888889999999999999998754
No 388
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=88.46 E-value=1.6 Score=24.40 Aligned_cols=34 Identities=35% Similarity=0.378 Sum_probs=28.4
Q ss_pred hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhcc
Q 044796 3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVA 36 (186)
Q Consensus 3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 36 (186)
++.|..+...|...-..|++++|+.+|..+++..
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l 38 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYL 38 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 3567778888888889999999999999998753
No 389
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=88.22 E-value=1.6 Score=24.55 Aligned_cols=34 Identities=26% Similarity=0.283 Sum_probs=29.4
Q ss_pred hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhcc
Q 044796 3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVA 36 (186)
Q Consensus 3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 36 (186)
+..+-.++..|...-..|++++|..+|..+++..
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~ 36 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLL 36 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 4567788888988889999999999999998864
No 390
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=88.14 E-value=1.5 Score=24.65 Aligned_cols=35 Identities=23% Similarity=0.177 Sum_probs=29.0
Q ss_pred hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccC
Q 044796 3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVAS 37 (186)
Q Consensus 3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 37 (186)
++.+..+...|...=..|++++|+.+|..+++..-
T Consensus 3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~ 37 (75)
T cd02680 3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCI 37 (75)
T ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHH
Confidence 45677788888888889999999999999998643
No 391
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.05 E-value=4.4 Score=31.80 Aligned_cols=62 Identities=13% Similarity=-0.004 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCC----ChHHHHHHHHHHHHHHHHhhcc-ccccchhhhhcccC
Q 044796 109 ALIRRAEAHEKLEHFEEAIADMKKILEF---DPS----NNQAKRTILRKLKEMGNSILGR-FGMSTDNFKAVKDP 175 (186)
Q Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~----~~~~~~~l~~~~~~~~~~~~~~-~~~A~~~~~~~~~~ 175 (186)
-++.+|.++..+|+...|..+|..+++. ..+ -|.+++.+|..+.. ++. +.++..++.+|.+-
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~-----~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWD-----LGGGLKEARALLLKAREY 520 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh-----cccChHHHHHHHHHHHhh
Confidence 4567899999999999999999998843 222 36789999998888 555 88888999888654
No 392
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=87.73 E-value=1.6 Score=24.77 Aligned_cols=33 Identities=27% Similarity=0.223 Sum_probs=28.9
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhcc
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVA 36 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 36 (186)
+.|....+.|..+-..|+.++|+.+|++++..-
T Consensus 6 ~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l 38 (79)
T cd02679 6 KQAFEEISKALRADEWGDKEQALAHYRKGLREL 38 (79)
T ss_pred HHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHH
Confidence 567788889999989999999999999998753
No 393
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.27 E-value=12 Score=31.60 Aligned_cols=126 Identities=21% Similarity=0.265 Sum_probs=65.5
Q ss_pred hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHH
Q 044796 3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGIC 82 (186)
Q Consensus 3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 82 (186)
+.....-.+.|..+...|+|.+|+++|+.+|-.-|-..- . .......+.+.+.. -.-+-.|..
T Consensus 988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vv------d--~~~e~aea~~li~i---------~~eYi~gL~ 1050 (1202)
T KOG0292|consen 988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVV------D--SKEEEAEADELIKI---------CREYIVGLS 1050 (1202)
T ss_pred HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEe------c--chhhHHHHHHHHHH---------HHHHHhhhe
Confidence 344566678899999999999999999998866553100 0 00000000000000 000111111
Q ss_pred H------hhhccHHHH--HHHHHHHHhcCcccH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHH
Q 044796 83 F------LKLGKFEES--IKECTKALELNPTYM-KALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKR 145 (186)
Q Consensus 83 ~------~~~~~~~~A--~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 145 (186)
. +..+..+.+ +..|=.-..+.|-+. .++...-.++++++++..|...-++.+++.|..+.+..
T Consensus 1051 ~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1051 VELERRKLKKPNLEQQLELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred eeeeecccCCchHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence 0 011223333 111112223344332 23333345688899999999999999999988765543
No 394
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.18 E-value=4.1 Score=30.90 Aligned_cols=100 Identities=10% Similarity=0.151 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---CChHHHHH
Q 044796 73 SICHSNRGICFLKLGKFEESIKECTKALELNP---TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDP---SNNQAKRT 146 (186)
Q Consensus 73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~ 146 (186)
..++-.+|.-|...|+++.|+.+|.++-..-. .-...+.++-.+-...|++..-..+..++.+.-. +-......
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 46788899999999999999999999554322 2345677777778888999888888888876420 11111111
Q ss_pred HHHHHHHHHHHhhccccccchhhhhc
Q 044796 147 ILRKLKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 147 l~~~~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
...|+..+.+..+++|..|..+|-.+
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 23455556666678888888877554
No 395
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=87.13 E-value=2.9 Score=35.42 Aligned_cols=90 Identities=11% Similarity=0.077 Sum_probs=66.3
Q ss_pred HHHHHhhhccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHh----c---CHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796 79 RGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKL----E---HFEEAIADMKKILEFDPSNNQAKRTIL 148 (186)
Q Consensus 79 ~a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~l~ 148 (186)
...++..-+.|++|+..|++.-...|.- -++.++.|.++... | .+++|+..|++... .|.-|--+...+
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHH
Confidence 3456677788999999999999988865 46788888886643 2 46777777776543 455565566666
Q ss_pred HHHHHHHHHhhccccccchhhhhccc
Q 044796 149 RKLKEMGNSILGRFGMSTDNFKAVKD 174 (186)
Q Consensus 149 ~~~~~~~~~~~~~~~~A~~~~~~~~~ 174 (186)
.+|.. ++++++=+++|..++.
T Consensus 560 ~~~~~-----~~~~~~~~~~~~~~~~ 580 (932)
T PRK13184 560 LVYQR-----LGEYNEEIKSLLLALK 580 (932)
T ss_pred HHHHH-----hhhHHHHHHHHHHHHH
Confidence 67777 8888888888887753
No 396
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=87.02 E-value=5.9 Score=25.21 Aligned_cols=120 Identities=16% Similarity=0.056 Sum_probs=63.0
Q ss_pred hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccch------------------hhh---hcCchhHHHhhCCCcchhH
Q 044796 12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAP------------------EAK---EGQSASEKKEVAPAPEMAE 70 (186)
Q Consensus 12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~------------------~~~---~~~~~~~~~~~~~~~~~~~ 70 (186)
-|...+-.|..++..+...+.....+-...-|.-.-. ++. -+.............
T Consensus 8 eAK~~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n---- 83 (161)
T PF09205_consen 8 EAKERILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRN---- 83 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT----
T ss_pred HHHHHHHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhc----
Confidence 3555677888899999998888776655444442211 110 011111111110000
Q ss_pred HHHHHHHHHHHHH-hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796 71 LRSICHSNRGICF-LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEF 136 (186)
Q Consensus 71 ~~~~~~~~~a~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (186)
...-+..+|.-. ..+|+-++-...++...+.+..+|..+..+|.+|.++|+..+|-+.+++|.+.
T Consensus 84 -~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 84 -KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp ----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred -chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 012334444333 33455555555555555555567889999999999999999999999998764
No 397
>PF12854 PPR_1: PPR repeat
Probab=86.84 E-value=2 Score=19.72 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHH
Q 044796 109 ALIRRAEAHEKLEHFEEAIADMK 131 (186)
Q Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~ 131 (186)
.|..+-..+.+.|+.++|.+.|+
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Confidence 44444455555555555555554
No 398
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=86.67 E-value=2.8 Score=23.37 Aligned_cols=34 Identities=38% Similarity=0.410 Sum_probs=28.2
Q ss_pred hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhcc
Q 044796 3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVA 36 (186)
Q Consensus 3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 36 (186)
++.+..+...|...=..|++++|+.+|..+++..
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l 36 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYL 36 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4567777888888888999999999999998753
No 399
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=85.57 E-value=3.2 Score=22.67 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHh
Q 044796 75 CHSNRGICFLKLGKFEESIKECTKALE 101 (186)
Q Consensus 75 ~~~~~a~~~~~~~~~~~A~~~~~~al~ 101 (186)
.+...|.-.-..|++++|+.+|..+++
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~ 33 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIE 33 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455555555666666555555554
No 400
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=85.57 E-value=13 Score=27.71 Aligned_cols=75 Identities=15% Similarity=0.094 Sum_probs=53.1
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALEL--NPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTIL 148 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 148 (186)
-+-.+++.......-.+.++...+..... =..+...+--.|..+.++|+.++|...|.+++.+.++..+..+...
T Consensus 330 vV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 330 VVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred eEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 44456666665555566666666655543 1234446667899999999999999999999999998777655444
No 401
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.54 E-value=17 Score=29.12 Aligned_cols=114 Identities=17% Similarity=0.111 Sum_probs=75.8
Q ss_pred HcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHH
Q 044796 18 AEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECT 97 (186)
Q Consensus 18 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 97 (186)
+...|++|...|.-+....+.+.-.. .....|+....+..++.+...+|+.+-|.....
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~---------------------lL~ssPYHvdsLLqva~~~r~qgD~e~aadLie 308 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLI---------------------LLISSPYHVDSLLQVADIFRFQGDREMAADLIE 308 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceee---------------------eeccCCcchhHHHHHHHHHHHhcchhhHHHHHH
Confidence 45678899988888877654432111 111225566888888999999998887777777
Q ss_pred HHHhc-----Cc----------------ccH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHH
Q 044796 98 KALEL-----NP----------------TYM---KALIRRAEAHEKLEHFEEAIADMKKILEFDPS-NNQAKRTILRKLK 152 (186)
Q Consensus 98 ~al~~-----~p----------------~~~---~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 152 (186)
++|-. .| .+- .+++..=..+.+.|-+..|+++.+-.++++|. +|-+...+...+.
T Consensus 309 R~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 309 RGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred HHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
Confidence 76632 12 121 23344445567888999999999999999998 7766555555443
No 402
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=85.51 E-value=6.8 Score=24.46 Aligned_cols=76 Identities=17% Similarity=0.218 Sum_probs=50.4
Q ss_pred HHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhc
Q 044796 8 EAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLG 87 (186)
Q Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 87 (186)
.+-.+|...++.+++-.++-+|++|+.+..+-.... ..+ ..+.........-++|..+..+|
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~-----------~~e-------l~dll~i~VisCHNLA~FWR~~g 64 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESN-----------EIE-------LEDLLTISVISCHNLADFWRSQG 64 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccc-----------ccc-------HHHHHHHHHHHHhhHHHHHHHcC
Confidence 356788999999999999999999998755410000 000 00000112245568899999999
Q ss_pred cHHHHHHHHHHHHh
Q 044796 88 KFEESIKECTKALE 101 (186)
Q Consensus 88 ~~~~A~~~~~~al~ 101 (186)
+.+=.+.+++-|-+
T Consensus 65 d~~yELkYLqlASE 78 (140)
T PF10952_consen 65 DSDYELKYLQLASE 78 (140)
T ss_pred ChHHHHHHHHHHHH
Confidence 98888888876654
No 403
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=85.34 E-value=15 Score=28.16 Aligned_cols=103 Identities=10% Similarity=-0.014 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC-----c-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHH
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKALELN-----P-TYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKR 145 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 145 (186)
.+..|+.+..++...|+...-...+...+... . ........+=..|...+.|+.|-....+..- |+... ..
T Consensus 168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~--pe~~s-nn 244 (493)
T KOG2581|consen 168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVY--PEAAS-NN 244 (493)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC--ccccc-cH
Confidence 45788889999999998776666665555431 1 2233455566778888999999888777752 32211 11
Q ss_pred HHHHHHHHHHHH--hhccccccchhhhhcccCCC
Q 044796 146 TILRKLKEMGNS--ILGRFGMSTDNFKAVKDPNT 177 (186)
Q Consensus 146 ~l~~~~~~~~~~--~~~~~~~A~~~~~~~~~~~~ 177 (186)
..++.+.-+|.. ++.+|..|.++|-+++...|
T Consensus 245 e~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 245 EWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred HHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 223333335543 59999999999988864434
No 404
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=84.96 E-value=2 Score=24.12 Aligned_cols=15 Identities=13% Similarity=0.208 Sum_probs=7.2
Q ss_pred cCHHHHHHHHHHHHh
Q 044796 121 EHFEEAIADMKKILE 135 (186)
Q Consensus 121 g~~~~A~~~~~~al~ 135 (186)
|+|++|+..|..+++
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 445554444444443
No 405
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=84.88 E-value=2.2 Score=18.47 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=12.5
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHH
Q 044796 77 SNRGICFLKLGKFEESIKECTKAL 100 (186)
Q Consensus 77 ~~~a~~~~~~~~~~~A~~~~~~al 100 (186)
..+-..+.+.|++++|...+++-.
T Consensus 4 ~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 4 NSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHccchHHHHHHHHHHHh
Confidence 334445555555555555555543
No 406
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=84.86 E-value=6.2 Score=31.53 Aligned_cols=58 Identities=12% Similarity=0.029 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMK 131 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 131 (186)
.+......|..+..-+..++|-.+|++.+..+|+ ++++..+.-+.+.|-...|...+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 98 (578)
T PRK15490 41 TSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILK 98 (578)
T ss_pred hHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHH
Confidence 4455666777777788888888888888888877 667777777888888777777776
No 407
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.62 E-value=26 Score=30.48 Aligned_cols=60 Identities=10% Similarity=0.081 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796 73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137 (186)
Q Consensus 73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (186)
+..|..+|.+..+.|...+|+..|-+ .++|..+...-.+..+.|.|++=+.++.-+.+.-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik-----adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK-----ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh-----cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 48899999999999999999998865 3677788888888999999999999888887643
No 408
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=84.35 E-value=12 Score=26.30 Aligned_cols=33 Identities=6% Similarity=0.033 Sum_probs=27.8
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCC
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVP 39 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 39 (186)
+.+..+|....+.|+|++.+.++++++..+|..
T Consensus 2 e~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eL 34 (236)
T PF00244_consen 2 EELIYLAKLAEQAERYDDMVEYMKQLIEMNPEL 34 (236)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHTSS--
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCC
Confidence 356778999999999999999999999998764
No 409
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=84.29 E-value=15 Score=27.41 Aligned_cols=108 Identities=26% Similarity=0.180 Sum_probs=67.1
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchh-HHHHHHHHHHHHHHh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMA-ELRSICHSNRGICFL 84 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~~~ 84 (186)
+..-.+-|..+....+|..|..+|-+|++-+..- .... ...+--|..+..+-.
T Consensus 209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~--------------------------~~~v~A~~sLKYMlLcKIMl 262 (411)
T KOG1463|consen 209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL--------------------------DDDVKALTSLKYMLLCKIML 262 (411)
T ss_pred HHHHHhccceeecccccchHHHHHHHHHcccccc--------------------------CCcHHHHHHHHHHHHHHHHh
Confidence 3444555666677788999999988888765541 1110 001122333444443
Q ss_pred hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH--HhcCHHHHHHHHHHHHhcCCC
Q 044796 85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHE--KLEHFEEAIADMKKILEFDPS 139 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~p~ 139 (186)
..-+--.++-.-+.+++.+..+..+....+.++. .+.+|+.|+..|..-+.-||-
T Consensus 263 n~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i 319 (411)
T KOG1463|consen 263 NLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI 319 (411)
T ss_pred cCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH
Confidence 3334445566666777777777788887777765 455888888888888876654
No 410
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=84.15 E-value=16 Score=27.50 Aligned_cols=48 Identities=13% Similarity=0.036 Sum_probs=42.4
Q ss_pred hccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796 86 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKI 133 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (186)
.+..-+|+..++.++..+|.+......+..+|..+|-...|...|...
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 345678999999999999999999999999999999999999988543
No 411
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=84.14 E-value=11 Score=25.58 Aligned_cols=158 Identities=13% Similarity=0.073 Sum_probs=90.8
Q ss_pred HHHHHHHhHhHHH-HcccHHHHHHHHHHHHhccCCChhhhhccchhhhh---cC---chhHHHhhC--CCcchhHHHHHH
Q 044796 5 EANEAKLEGNKLF-AEGKYEEALLQYEVALRVASVPERAESASAPEAKE---GQ---SASEKKEVA--PAPEMAELRSIC 75 (186)
Q Consensus 5 ~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~---~~---~~~~~~~~~--~~~~~~~~~~~~ 75 (186)
.++....+|.-+. -.++|++|...|..--..+. ++..-+-+|..... +. ...+...+. .... .+.+
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n----~~~a 107 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDAN----IPQA 107 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccC----CHHH
Confidence 4566666775554 35689999999988766543 34444444443311 11 122222211 1111 2366
Q ss_pred HHHHHHHHhhh-----c--cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH------------------------hcCHH
Q 044796 76 HSNRGICFLKL-----G--KFEESIKECTKALELNPTYMKALIRRAEAHEK------------------------LEHFE 124 (186)
Q Consensus 76 ~~~~a~~~~~~-----~--~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~------------------------~g~~~ 124 (186)
...+|.++..- + +.++|..++.++...+. ..+-+.++-.+.. ..+.+
T Consensus 108 C~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~~--~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMd 185 (248)
T KOG4014|consen 108 CRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLED--GEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMD 185 (248)
T ss_pred HhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCCC--chHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHH
Confidence 66777776542 2 36788999998887643 3333444433333 24667
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796 125 EAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 125 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
.|+++--+|.+++ ++.+.-++++.+ .+|+-+.++-++|..+-+++
T Consensus 186 ka~qfa~kACel~--~~~aCAN~SrMy-klGDGv~Kde~~Aekyk~rA 230 (248)
T KOG4014|consen 186 KALQFAIKACELD--IPQACANVSRMY-KLGDGVPKDEDQAEKYKDRA 230 (248)
T ss_pred HHHHHHHHHHhcC--ChHHHhhHHHHH-HccCCCCccHHHHHHHHHHH
Confidence 7887777777664 456666666544 45776666777777766555
No 412
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=84.07 E-value=13 Score=30.98 Aligned_cols=27 Identities=11% Similarity=0.137 Sum_probs=18.4
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHH
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVA 32 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~a 32 (186)
.+.+-..|..+-+..++++|++||++.
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkg 687 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKG 687 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcc
Confidence 344445566777777888888888763
No 413
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=84.00 E-value=1.1 Score=33.00 Aligned_cols=52 Identities=17% Similarity=0.318 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCH
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF 123 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 123 (186)
...+++.++..+....++++|++....+....|.+..+...+..+-....++
T Consensus 308 ~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 308 KTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred hCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 3478899999999999999999999999999999988776666555444443
No 414
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=83.65 E-value=2.8 Score=26.00 Aligned_cols=31 Identities=39% Similarity=0.583 Sum_probs=27.2
Q ss_pred HHHhHhHHHHcccHHHHHHHHHHHHhccCCC
Q 044796 9 AKLEGNKLFAEGKYEEALLQYEVALRVASVP 39 (186)
Q Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 39 (186)
...+|..+...|++++|..+|-.|+...|+.
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 4568999999999999999999999999983
No 415
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=83.64 E-value=11 Score=31.03 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=18.2
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHH
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVA 32 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a 32 (186)
.++.++|..+.....|++|.++|...
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45667777777777777777777654
No 416
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=83.38 E-value=8.7 Score=24.00 Aligned_cols=67 Identities=15% Similarity=0.040 Sum_probs=50.2
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHHhcCcc---------------cHHHHHHHHHHHHHhcCHHHHHHHHHHH----Hhc
Q 044796 76 HSNRGICFLKLGKFEESIKECTKALELNPT---------------YMKALIRRAEAHEKLEHFEEAIADMKKI----LEF 136 (186)
Q Consensus 76 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~a----l~~ 136 (186)
+..+|...++.+++-.++-+|++|+.+..+ ....-.++|..+...|+.+=.+++++-| +.+
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 356788888888888899999988865321 1234678999999999999999988655 556
Q ss_pred CCCChH
Q 044796 137 DPSNNQ 142 (186)
Q Consensus 137 ~p~~~~ 142 (186)
-|..+.
T Consensus 84 iPQCp~ 89 (140)
T PF10952_consen 84 IPQCPN 89 (140)
T ss_pred ccCCCC
Confidence 676553
No 417
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.31 E-value=4.1 Score=24.32 Aligned_cols=38 Identities=8% Similarity=-0.092 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH
Q 044796 106 YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA 143 (186)
Q Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 143 (186)
-|..+..+|.+|...|+.+.|.+.|+.--.+.|++...
T Consensus 71 pPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~~f 108 (121)
T COG4259 71 PPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESGVF 108 (121)
T ss_pred CCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccchhH
Confidence 36688899999999999999999999999999987643
No 418
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=83.06 E-value=8 Score=23.35 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=12.7
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHhc
Q 044796 77 SNRGICFLKLGKFEESIKECTKALEL 102 (186)
Q Consensus 77 ~~~a~~~~~~~~~~~A~~~~~~al~~ 102 (186)
...|......|++..|.+...++-+.
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~ 88 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKL 88 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 33444444455555555555555443
No 419
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=82.60 E-value=4.3 Score=22.89 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhc
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALEL 102 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 102 (186)
..+...|.-.-..|+|++|+.+|..+++.
T Consensus 7 i~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 7 VQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455566666667777777766666653
No 420
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=82.36 E-value=19 Score=27.28 Aligned_cols=67 Identities=18% Similarity=0.083 Sum_probs=44.8
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhh
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKL 86 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 86 (186)
......+..++..++|..|...+......-|.... .........|..++..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-----------------------------~~~~~~l~~~y~~WD~ 182 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREE-----------------------------YQRYKDLCEGYDAWDR 182 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-----------------------------HHHHHHHHHHHHHHHc
Confidence 34556777889999999999999998885333111 0112223345555667
Q ss_pred ccHHHHHHHHHHHHhc
Q 044796 87 GKFEESIKECTKALEL 102 (186)
Q Consensus 87 ~~~~~A~~~~~~al~~ 102 (186)
-++.+|...++..+..
T Consensus 183 fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 183 FDHKEALEYLEKLLKR 198 (379)
T ss_pred cCHHHHHHHHHHHHHH
Confidence 7788888888887764
No 421
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=82.15 E-value=10 Score=28.25 Aligned_cols=89 Identities=20% Similarity=0.165 Sum_probs=56.1
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------------------
Q 044796 77 SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDP------------------ 138 (186)
Q Consensus 77 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------------ 138 (186)
+.+-+...+..+..+-++....++++||....++..++.- ..--..+|...|+++++...
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA 265 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence 3444555566777888899999999999999888877643 22234556666666665321
Q ss_pred -----CCh--HHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796 139 -----SNN--QAKRTILRKLKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 139 -----~~~--~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
.+. -+...++.|-++ +|+..+|++.|...
T Consensus 266 ~~rRDtnvl~YIKRRLAMCARk-----lGrlrEA~K~~RDL 301 (556)
T KOG3807|consen 266 QLRRDTNVLVYIKRRLAMCARK-----LGRLREAVKIMRDL 301 (556)
T ss_pred hhhcccchhhHHHHHHHHHHHH-----hhhHHHHHHHHHHH
Confidence 111 123344544444 78888888877644
No 422
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.45 E-value=16 Score=25.59 Aligned_cols=62 Identities=11% Similarity=0.080 Sum_probs=49.0
Q ss_pred HhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHH
Q 044796 13 GNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEES 92 (186)
Q Consensus 13 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A 92 (186)
...+++.+..++|+...+.-++..|.+. .....+=..+...|+|++|
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda---------------------------------~~RhflfqLlcvaGdw~kA 54 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDA---------------------------------GGRHFLFQLLCVAGDWEKA 54 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccc---------------------------------cchhHHHHHHhhcchHHHH
Confidence 3467788999999999999999999843 3333344566778999999
Q ss_pred HHHHHHHHhcCcccH
Q 044796 93 IKECTKALELNPTYM 107 (186)
Q Consensus 93 ~~~~~~al~~~p~~~ 107 (186)
...++-+-++.|++.
T Consensus 55 l~Ql~l~a~l~p~~t 69 (273)
T COG4455 55 LAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHhhcCcccc
Confidence 999999999988764
No 423
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=81.24 E-value=3.9 Score=18.50 Aligned_cols=29 Identities=21% Similarity=0.101 Sum_probs=22.7
Q ss_pred HHHHHhHhHHHHc----ccHHHHHHHHHHHHhc
Q 044796 7 NEAKLEGNKLFAE----GKYEEALLQYEVALRV 35 (186)
Q Consensus 7 ~~~~~~g~~~~~~----~~~~~A~~~~~~al~~ 35 (186)
.+.+.+|..+... .+..+|+.+|+++.+.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~ 34 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAEL 34 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHc
Confidence 4677888887653 4899999999998764
No 424
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=80.56 E-value=19 Score=30.12 Aligned_cols=136 Identities=17% Similarity=0.135 Sum_probs=73.2
Q ss_pred hHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCC--CcchhHHHHHHHHHHHHHHhhhccH
Q 044796 12 EGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAP--APEMAELRSICHSNRGICFLKLGKF 89 (186)
Q Consensus 12 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (186)
-|..+...|+++.|+.+|-++-.+-..- -.+++. .+..+++.. ..+........|-..+.-|...|+|
T Consensus 712 wg~hl~~~~q~daainhfiea~~~~kai---eaai~a-------kew~kai~ildniqdqk~~s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 712 WGDHLEQIGQLDAAINHFIEANCLIKAI---EAAIGA-------KEWKKAISILDNIQDQKTASGYYGEIADHYANKGDF 781 (1636)
T ss_pred HhHHHHHHHhHHHHHHHHHHhhhHHHHH---HHHhhh-------hhhhhhHhHHHHhhhhccccccchHHHHHhccchhH
Confidence 4667778888999988886653321110 000000 001111100 0111111235666788889999999
Q ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHHHHHhhccccccchh
Q 044796 90 EESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQ-AKRTILRKLKEMGNSILGRFGMSTDN 168 (186)
Q Consensus 90 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~~~~~~A~~~ 168 (186)
+-|...|.++=..+ . .-..|-+.|++++|.+.-.++.. |+... .+...+.-+.. .|+|.+|...
T Consensus 782 e~ae~lf~e~~~~~----d----ai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedlde-----hgkf~eaeql 846 (1636)
T KOG3616|consen 782 EIAEELFTEADLFK----D----AIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDE-----HGKFAEAEQL 846 (1636)
T ss_pred HHHHHHHHhcchhH----H----HHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHh-----hcchhhhhhe
Confidence 99988887754321 1 23445677888888777766643 44332 22333333333 6777777766
Q ss_pred hhhc
Q 044796 169 FKAV 172 (186)
Q Consensus 169 ~~~~ 172 (186)
|-.+
T Consensus 847 yiti 850 (1636)
T KOG3616|consen 847 YITI 850 (1636)
T ss_pred eEEc
Confidence 6444
No 425
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=80.54 E-value=4 Score=18.17 Aligned_cols=26 Identities=38% Similarity=0.243 Sum_probs=14.4
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHH
Q 044796 127 IADMKKILEFDPSNNQAKRTILRKLK 152 (186)
Q Consensus 127 ~~~~~~al~~~p~~~~~~~~l~~~~~ 152 (186)
+.....++..+|.+..+|...-.++.
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~ 28 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLK 28 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHH
Confidence 44455556666666666655554443
No 426
>PF15469 Sec5: Exocyst complex component Sec5
Probab=80.33 E-value=15 Score=24.54 Aligned_cols=27 Identities=19% Similarity=0.227 Sum_probs=16.8
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHH
Q 044796 121 EHFEEAIADMKKILEFDPSNNQAKRTI 147 (186)
Q Consensus 121 g~~~~A~~~~~~al~~~p~~~~~~~~l 147 (186)
...++........++++|+...+|..+
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 345566666666677777666666554
No 427
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=80.15 E-value=20 Score=25.99 Aligned_cols=138 Identities=16% Similarity=0.139 Sum_probs=79.6
Q ss_pred HhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHH-HHHhhhccH
Q 044796 11 LEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRG-ICFLKLGKF 89 (186)
Q Consensus 11 ~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~~~~~~ 89 (186)
.-+..+.-..||..|+...+++++.-.++...--..+.. .... -.++..| +++..+++|
T Consensus 40 ~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~-------------------~evK-~sLcvvGIQALAEmnrW 99 (309)
T PF07163_consen 40 EAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSS-------------------LEVK-CSLCVVGIQALAEMNRW 99 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccch-------------------hhhh-hhhhhhhHHHHHHHhhH
Confidence 345666778899999999999988653321111000000 0000 2333333 566778999
Q ss_pred HHHHHHHHHHHhcCccc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH--HHHHHHHHHHHHHHhhccccccc
Q 044796 90 EESIKECTKALELNPTY-MKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQA--KRTILRKLKEMGNSILGRFGMST 166 (186)
Q Consensus 90 ~~A~~~~~~al~~~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~--~~~l~~~~~~~~~~~~~~~~~A~ 166 (186)
.+++.+.-+-.+.-.+- ++++-..-..|.+.|++...++.-..-+. +|+|... +..++..+..---.-+|.+++|.
T Consensus 100 reVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAe 178 (309)
T PF07163_consen 100 REVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLLHVLLPLGHFSEAE 178 (309)
T ss_pred HHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHHHHHHHHhccccHHHHH
Confidence 99998888877654333 34444444557788888877766655554 5665322 44444443322222377777777
Q ss_pred hhh
Q 044796 167 DNF 169 (186)
Q Consensus 167 ~~~ 169 (186)
+..
T Consensus 179 elv 181 (309)
T PF07163_consen 179 ELV 181 (309)
T ss_pred HHH
Confidence 655
No 428
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=79.87 E-value=6.2 Score=22.27 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=12.1
Q ss_pred HHHHHHHHhhhccHHHHHHHHHHHH
Q 044796 76 HSNRGICFLKLGKFEESIKECTKAL 100 (186)
Q Consensus 76 ~~~~a~~~~~~~~~~~A~~~~~~al 100 (186)
+...|.-.-..|++++|+.+|..++
T Consensus 9 l~~~Ave~D~~g~y~eAl~~Y~~ai 33 (77)
T cd02683 9 VLKRAVELDQEGRFQEALVCYQEGI 33 (77)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3344444445555555555544444
No 429
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=79.44 E-value=8 Score=24.04 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=22.4
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCChH
Q 044796 112 RRAEAHEKLEHFEEAIADMKKILEFDPSNNQ 142 (186)
Q Consensus 112 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 142 (186)
.+|..+...|++++|..+|-+|+.+.|.-..
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~~ 98 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQPAE 98 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCHHH
Confidence 4677777778888888888888888776433
No 430
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.17 E-value=23 Score=26.21 Aligned_cols=103 Identities=11% Similarity=-0.026 Sum_probs=62.4
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhh
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLK 85 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 85 (186)
+-....+|..|-+.++|..|...+.- +.++... ...........+..+|..|..
T Consensus 103 ~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~-------------------------~~~d~~~kl~l~iriarlyLe 156 (399)
T KOG1497|consen 103 ASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQ-------------------------KAYDVEQKLLLCIRIARLYLE 156 (399)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccch-------------------------hhhhhHHHHHHHHHHHHHHHh
Confidence 34567788999999999999887642 2222210 001111233677889999999
Q ss_pred hccHHHHHHHHHHHH--hcCcccHHHHHHHHHH----HHHhcCHHHHHHHHHHHH
Q 044796 86 LGKFEESIKECTKAL--ELNPTYMKALIRRAEA----HEKLEHFEEAIADMKKIL 134 (186)
Q Consensus 86 ~~~~~~A~~~~~~al--~~~p~~~~~~~~lg~~----~~~~g~~~~A~~~~~~al 134 (186)
.++-.+|..+.+++- ..+..++.....+-.| +-..++|-+|...|.+..
T Consensus 157 ~~d~veae~~inRaSil~a~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 157 DDDKVEAEAYINRASILQAESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred cCcHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888764 2344555554444333 444455555555554443
No 431
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.08 E-value=12 Score=27.00 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=40.7
Q ss_pred hccHHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796 86 LGKFEESIKECTKALELNPTYM----KALIRRAEAHEKLEHFEEAIADMKKILE 135 (186)
Q Consensus 86 ~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (186)
..+.++|+..|++++++.+.-. .++-.+-.+.+++|++++-+..|.+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 4478999999999999987653 4666778889999999988888877764
No 432
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=78.32 E-value=5.3 Score=18.31 Aligned_cols=26 Identities=12% Similarity=0.144 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796 122 HFEEAIADMKKILEFDPSNNQAKRTIL 148 (186)
Q Consensus 122 ~~~~A~~~~~~al~~~p~~~~~~~~l~ 148 (186)
.++.|...|++.+...|+ +..|...+
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence 456677777777777665 44555444
No 433
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.91 E-value=13 Score=24.93 Aligned_cols=32 Identities=22% Similarity=0.206 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCc
Q 044796 73 SICHSNRGICFLKLGKFEESIKECTKALELNP 104 (186)
Q Consensus 73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 104 (186)
+..+..++.++...|+.++|.....++....|
T Consensus 144 ~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 144 PNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 47888899999999999999999999999999
No 434
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=77.54 E-value=14 Score=26.56 Aligned_cols=104 Identities=16% Similarity=0.009 Sum_probs=68.2
Q ss_pred hHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHH
Q 044796 14 NKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESI 93 (186)
Q Consensus 14 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~ 93 (186)
..++..++.-.|+..|...+.-.|.+..+...-+.+.. ..+.....++. .-....|.
T Consensus 3 ~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lE----------------------k~~~~Fs~~~s-~~~~~n~~ 59 (368)
T COG5091 3 KALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLE----------------------KLYFGFSDWHS-DATMENAK 59 (368)
T ss_pred cchhcccchHHHhhhhhhhhccCCcceeEEeehhhhHH----------------------HHHhhhhhhhc-ccChhhHH
Confidence 34566777778888888888877776544433322211 33333333332 33557788
Q ss_pred HHHHHHHhcCcc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 044796 94 KECTKALELNPT------YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSN 140 (186)
Q Consensus 94 ~~~~~al~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 140 (186)
..+++|+-.... -..+..+++..++...+|+-|..+|.+|+.+-.++
T Consensus 60 e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d 112 (368)
T COG5091 60 ELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDD 112 (368)
T ss_pred HHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence 888888854321 13356678889999999999999999999875443
No 435
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=77.41 E-value=5.9 Score=18.33 Aligned_cols=13 Identities=31% Similarity=0.348 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHh
Q 044796 123 FEEAIADMKKILE 135 (186)
Q Consensus 123 ~~~A~~~~~~al~ 135 (186)
+++|+.+|+++.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 4455555555443
No 436
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=77.20 E-value=5.2 Score=17.62 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=10.2
Q ss_pred HHHHhhhccHHHHHHHHHHHH
Q 044796 80 GICFLKLGKFEESIKECTKAL 100 (186)
Q Consensus 80 a~~~~~~~~~~~A~~~~~~al 100 (186)
-..+.+.|++++|...|.+..
T Consensus 7 i~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 7 IDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 344445555555555555443
No 437
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=76.52 E-value=26 Score=25.40 Aligned_cols=67 Identities=10% Similarity=-0.001 Sum_probs=44.3
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccH--HHHHH----HHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYM--KALIR----RAEAHEKLEHFEEAIADMKKILEFDPSN 140 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~----lg~~~~~~g~~~~A~~~~~~al~~~p~~ 140 (186)
.+|..--+.|-.+++-.+-...|++++.+..--| .+.-- =|..+.+.|++++|-..|-.|.+--.+.
T Consensus 192 EiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEs 264 (440)
T KOG1464|consen 192 EIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDES 264 (440)
T ss_pred hhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhccccc
Confidence 4455555667777777777778888887754332 22111 1445778889999999999998764443
No 438
>PRK11619 lytic murein transglycosylase; Provisional
Probab=76.13 E-value=43 Score=27.60 Aligned_cols=126 Identities=11% Similarity=-0.074 Sum_probs=70.1
Q ss_pred HHHhHhHHHHcccHHHHHHHHHHHHhccCCChh----hhhccchhhhhcC-chhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 9 AKLEGNKLFAEGKYEEALLQYEVALRVASVPER----AESASAPEAKEGQ-SASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
....|..-+...+.+.|...+.+.....+-..+ ++..++.-..... ...+.......+... .+....-......
T Consensus 244 ~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~A 322 (644)
T PRK11619 244 MAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMA 322 (644)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHH
Confidence 344455556677788888888876554433222 1112221111121 111221111111000 0112233333355
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796 84 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILE 135 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (186)
...++++.+...+...-......+...|.+|.++..+|+.++|...|+++..
T Consensus 323 l~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 323 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 5778888877777775443445678899999998889999999999999854
No 439
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=75.13 E-value=50 Score=27.88 Aligned_cols=100 Identities=15% Similarity=0.073 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHH---HHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 044796 73 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAH---EKLEHFEEAIADMKKILEFDPSNNQAKRTILR 149 (186)
Q Consensus 73 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~---~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 149 (186)
......+-.++++.|++++-...-....++.|..+..|.....-. ...++..++...|++++. +-.++..|...+.
T Consensus 113 ~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~-dy~~v~iw~e~~~ 191 (881)
T KOG0128|consen 113 YAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG-DYNSVPIWEEVVN 191 (881)
T ss_pred hHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc-ccccchHHHHHHH
Confidence 366667777888999998888888888888888887777654332 233677888999999985 5566778888888
Q ss_pred HHHHHHHH--hhccccccchhhhhcc
Q 044796 150 KLKEMGNS--ILGRFGMSTDNFKAVK 173 (186)
Q Consensus 150 ~~~~~~~~--~~~~~~~A~~~~~~~~ 173 (186)
.+...++. ..+.++.....|.+++
T Consensus 192 y~~~~~~~~~~~~d~k~~R~vf~ral 217 (881)
T KOG0128|consen 192 YLVGFGNVAKKSEDYKKERSVFERAL 217 (881)
T ss_pred HHHhccccccccccchhhhHHHHHHH
Confidence 77777763 4566777777777664
No 440
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=74.52 E-value=15 Score=27.52 Aligned_cols=34 Identities=12% Similarity=0.158 Sum_probs=29.7
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCC
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVASV 38 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 38 (186)
....+...|+.++..+++++|...|..|..+...
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~e 73 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDE 73 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999887544
No 441
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=74.38 E-value=6.2 Score=32.06 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=34.1
Q ss_pred HHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796 81 ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKI 133 (186)
Q Consensus 81 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (186)
..+...++|.+|....++--+.-|+ +++..|..+....+|++|.+.|-+|
T Consensus 781 qlHve~~~W~eAFalAe~hPe~~~d---Vy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEFKDD---VYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hheeecccchHhHhhhhhCcccccc---ccchHHHHhhhhhhHHHHHHHHHHh
Confidence 4555678888888777775555443 6666777777777777777766655
No 442
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=73.52 E-value=30 Score=24.56 Aligned_cols=30 Identities=20% Similarity=0.128 Sum_probs=25.4
Q ss_pred HHHHhHhHHHHcccHHHHHHHHHHHHhc-cC
Q 044796 8 EAKLEGNKLFAEGKYEEALLQYEVALRV-AS 37 (186)
Q Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p 37 (186)
.+..+|...-+.++|++.+.+..+++.. +|
T Consensus 3 ~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~ 33 (244)
T smart00101 3 ENVYMAKLAEQAERYEEMVEFMEKVAKTVDS 33 (244)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCC
Confidence 4566788888999999999999999887 54
No 443
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=73.51 E-value=11 Score=21.49 Aligned_cols=16 Identities=25% Similarity=0.505 Sum_probs=8.3
Q ss_pred cHHHHHHHHHHHHhcC
Q 044796 88 KFEESIKECTKALELN 103 (186)
Q Consensus 88 ~~~~A~~~~~~al~~~ 103 (186)
.|++|..+.+++|..+
T Consensus 4 ~~~~A~~~I~kaL~~d 19 (79)
T cd02679 4 YYKQAFEEISKALRAD 19 (79)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 3455555555555543
No 444
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=72.81 E-value=20 Score=22.35 Aligned_cols=55 Identities=11% Similarity=-0.115 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALE--LNPTYMKALIRRAEAHEKLEHFEEAIADMKKIL 134 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (186)
.+|...+.... .+...|+.... +....+..|...|..+...|++++|...|..++
T Consensus 70 kiWi~ya~~~~------~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 70 KIWIKYADLSS------DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHTTBS------HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcc------CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 45555544332 67777776664 456678888999999999999999999998775
No 445
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.54 E-value=44 Score=26.06 Aligned_cols=27 Identities=7% Similarity=-0.015 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796 109 ALIRRAEAHEKLEHFEEAIADMKKILE 135 (186)
Q Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (186)
.+..-|.+.+++|+-++|.++++.+..
T Consensus 269 L~LLQGV~~yHqg~~deAye~le~a~~ 295 (568)
T KOG2561|consen 269 LELLQGVVAYHQGQRDEAYEALESAHA 295 (568)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 344559999999999999999998865
No 446
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=72.05 E-value=49 Score=26.46 Aligned_cols=59 Identities=15% Similarity=0.010 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKIL 134 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (186)
.++..++.+|... .-++=...+++.++.+-++...-..++..|.. ++.+.+...|.+++
T Consensus 100 mal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 100 MALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHH
Confidence 3444444444444 22344444555555444444444444444433 44444555555544
No 447
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=71.53 E-value=32 Score=27.78 Aligned_cols=69 Identities=16% Similarity=0.201 Sum_probs=49.0
Q ss_pred HhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 83 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 83 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
..+....+.+....+.-+.-........+..+..+...+..++|-.+|++.+..+|+ +.++..++.+..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 86 (578)
T PRK15490 18 LKQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYN 86 (578)
T ss_pred HHHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHh
Confidence 334555667776777666655566667777788888888888888888888888888 455555665555
No 448
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=71.47 E-value=14 Score=27.70 Aligned_cols=59 Identities=15% Similarity=0.088 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCc--------ccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNP--------TYMKALIRRAEAHEKLEHFEEAIADMKK 132 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (186)
.-+...|+-++.++++++|...|..|..+.. .+..+++.+|..++.+++....+-.+-.
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~nal 108 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNAL 108 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 5567789999999999999999999987632 3467888999999999988877665443
No 449
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=71.46 E-value=14 Score=28.76 Aligned_cols=98 Identities=9% Similarity=0.006 Sum_probs=63.2
Q ss_pred HHHhhCCCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 044796 58 EKKEVAPAPEMAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD 137 (186)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (186)
...-+...|.+. ..|+.+-..+-.++.+++-.+.+++...-.|--+.+|...-.--....+|..-...|.+++...
T Consensus 31 LRerIkdNPtnI----~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~ 106 (660)
T COG5107 31 LRERIKDNPTNI----LSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS 106 (660)
T ss_pred HHHHhhcCchhH----HHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh
Confidence 334445555444 7888888888888888888888888887777666666554443444567777777788877644
Q ss_pred CCChHHHHHHHHHHHHHHHHhhc
Q 044796 138 PSNNQAKRTILRKLKEMGNSILG 160 (186)
Q Consensus 138 p~~~~~~~~l~~~~~~~~~~~~~ 160 (186)
-+ ...|...-...+...+...|
T Consensus 107 l~-ldLW~lYl~YIRr~n~~~tG 128 (660)
T COG5107 107 LN-LDLWMLYLEYIRRVNNLITG 128 (660)
T ss_pred cc-HhHHHHHHHHHHhhCccccc
Confidence 33 44555554444454444444
No 450
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=71.29 E-value=14 Score=20.52 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=8.4
Q ss_pred HHHHhhhccHHHHHHHHHHHH
Q 044796 80 GICFLKLGKFEESIKECTKAL 100 (186)
Q Consensus 80 a~~~~~~~~~~~A~~~~~~al 100 (186)
|...-..|++++|+.+|..++
T Consensus 15 Av~~d~~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 15 ALKADEAGDYEEALELYKKAI 35 (77)
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 333333444444444443333
No 451
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=71.13 E-value=8.5 Score=28.29 Aligned_cols=42 Identities=17% Similarity=0.049 Sum_probs=37.6
Q ss_pred hhHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhh
Q 044796 3 LNEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAES 44 (186)
Q Consensus 3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 44 (186)
.++|..++..|....+.|..-+|+..|+.|+++.|+-...+.
T Consensus 16 ~kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 16 AKKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHH
Confidence 367899999999999999999999999999999998766665
No 452
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=69.77 E-value=28 Score=22.70 Aligned_cols=123 Identities=15% Similarity=0.071 Sum_probs=72.0
Q ss_pred HHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccch------------hhhhcCchhHHHhhCCCcchhHHHHH
Q 044796 7 NEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAP------------EAKEGQSASEKKEVAPAPEMAELRSI 74 (186)
Q Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (186)
-.....+...+..|+.++|...+.++.........-+-.+.. +-...... ....+. ......
T Consensus 3 ~~~i~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~-v~d~~~-----~~~~~~ 76 (155)
T PF10938_consen 3 MRDIQKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVI-VIDDYV-----PTPEKK 76 (155)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEE-EE-----------HHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEE-EeeccC-----ChHHHH
Confidence 345567888899999999999999987765443322222220 00000000 000000 011235
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhc-C------c-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796 75 CHSNRGICFLKLGKFEESIKECTKALEL-N------P-TYMKALIRRAEAHEKLEHFEEAIADMKKILE 135 (186)
Q Consensus 75 ~~~~~a~~~~~~~~~~~A~~~~~~al~~-~------p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (186)
.....+.-.++.|+...|.+.++-+-.- + | .....-...+..+...|++.+|-..+..++.
T Consensus 77 ~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 77 AAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 6677888899999999998888765421 1 1 1133455678889999999999999988874
No 453
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=69.36 E-value=64 Score=26.71 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=14.7
Q ss_pred HhHhHHHHcccHHHHHHHHHH
Q 044796 11 LEGNKLFAEGKYEEALLQYEV 31 (186)
Q Consensus 11 ~~g~~~~~~~~~~~A~~~~~~ 31 (186)
.+|..+.-.|+|.+|.+.|.+
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHH
Confidence 355666667788888877765
No 454
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=68.74 E-value=9.3 Score=16.82 Aligned_cols=25 Identities=16% Similarity=0.049 Sum_probs=13.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796 111 IRRAEAHEKLEHFEEAIADMKKILE 135 (186)
Q Consensus 111 ~~lg~~~~~~g~~~~A~~~~~~al~ 135 (186)
..+-.++.+.|+++.|...|....+
T Consensus 5 ~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 5 NALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3344455556666666666555443
No 455
>PF13041 PPR_2: PPR repeat family
Probab=68.43 E-value=13 Score=18.45 Aligned_cols=28 Identities=21% Similarity=0.137 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796 109 ALIRRAEAHEKLEHFEEAIADMKKILEF 136 (186)
Q Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (186)
.|..+-..+.+.|++++|.+.|++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3344444455555555555555555543
No 456
>PRK11619 lytic murein transglycosylase; Provisional
Probab=68.42 E-value=67 Score=26.53 Aligned_cols=95 Identities=9% Similarity=-0.049 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
.++..+|......+...+|...+..+..... +...+-....+-...++++.....+...-.-..+.....+.+|+++..
T Consensus 280 ~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~ 358 (644)
T PRK11619 280 ELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLE 358 (644)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHH
Confidence 3444455444443325678888877654322 222223333344478899888777777544344567788999998888
Q ss_pred HHHHhhccccccchhhhhccc
Q 044796 154 MGNSILGRFGMSTDNFKAVKD 174 (186)
Q Consensus 154 ~~~~~~~~~~~A~~~~~~~~~ 174 (186)
.|+.++|...|+.+..
T Consensus 359 -----~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 359 -----QGRKAEAEEILRQLMQ 374 (644)
T ss_pred -----cCCHHHHHHHHHHHhc
Confidence 7888888888877643
No 457
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=68.01 E-value=12 Score=24.24 Aligned_cols=32 Identities=28% Similarity=0.479 Sum_probs=28.0
Q ss_pred HHHhHhHHHHcc-cHHHHHHHHHHHHhccCCCh
Q 044796 9 AKLEGNKLFAEG-KYEEALLQYEVALRVASVPE 40 (186)
Q Consensus 9 ~~~~g~~~~~~~-~~~~A~~~~~~al~~~p~~~ 40 (186)
-..+|..+...| +..++..+|-.||...|+..
T Consensus 93 eV~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~ 125 (148)
T TIGR00985 93 EVQLGEELMAQGTNVDEGAVHFYNALKVYPQPQ 125 (148)
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHHhCCCHH
Confidence 456899999999 99999999999999999843
No 458
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=67.47 E-value=36 Score=23.16 Aligned_cols=74 Identities=15% Similarity=0.076 Sum_probs=51.1
Q ss_pred HHHHHHHHHHh-----hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHhcCCCCh
Q 044796 74 ICHSNRGICFL-----KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE-------HFEEAIADMKKILEFDPSNN 141 (186)
Q Consensus 74 ~~~~~~a~~~~-----~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g-------~~~~A~~~~~~al~~~p~~~ 141 (186)
...+.+|..++ ..++...|+..+..+... +.+.+-..+|.++..-. +...|.+++.++..+. +.
T Consensus 69 kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~ 144 (248)
T KOG4014|consen 69 KSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DG 144 (248)
T ss_pred HHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--Cc
Confidence 44445554443 355789999999998874 56788888888876533 3678999999998665 45
Q ss_pred HHHHHHHHHH
Q 044796 142 QAKRTILRKL 151 (186)
Q Consensus 142 ~~~~~l~~~~ 151 (186)
++.+.|+-.+
T Consensus 145 ~aCf~LS~m~ 154 (248)
T KOG4014|consen 145 EACFLLSTMY 154 (248)
T ss_pred hHHHHHHHHH
Confidence 5666665443
No 459
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=66.97 E-value=65 Score=25.84 Aligned_cols=65 Identities=22% Similarity=0.224 Sum_probs=45.2
Q ss_pred HHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH--------------------hcCHHHHHHHHHHHHhcCCCC
Q 044796 81 ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK--------------------LEHFEEAIADMKKILEFDPSN 140 (186)
Q Consensus 81 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~--------------------~g~~~~A~~~~~~al~~~p~~ 140 (186)
.-|....+|.+|+......++.+..+..+.-++-..+.. -.++.+++..|++.+..+..|
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~eGn 292 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDEGN 292 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheeccCc
Confidence 345556788899999988888887776665555544444 456778888888888877766
Q ss_pred hHHHH
Q 044796 141 NQAKR 145 (186)
Q Consensus 141 ~~~~~ 145 (186)
.-.+.
T Consensus 293 FVfHq 297 (711)
T COG1747 293 FVFHQ 297 (711)
T ss_pred eEEec
Confidence 44333
No 460
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=66.82 E-value=17 Score=21.99 Aligned_cols=27 Identities=11% Similarity=0.092 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 044796 109 ALIRRAEAHEKLEHFEEAIADMKKILE 135 (186)
Q Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 135 (186)
-+..++..|...|.+++|++.+.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 456678888888888888888887776
No 461
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=66.47 E-value=15 Score=27.94 Aligned_cols=33 Identities=18% Similarity=0.190 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCH
Q 044796 89 FEESIKECTKALELNPTYMKALIRRAEAHEKLEHF 123 (186)
Q Consensus 89 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 123 (186)
..+|+.++++|.. .+.|..|..+|.++..+|+.
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL 366 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNL 366 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcc
Confidence 4567777777765 46788999999999988853
No 462
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=65.83 E-value=58 Score=24.87 Aligned_cols=28 Identities=18% Similarity=-0.022 Sum_probs=23.5
Q ss_pred HhHhHHHHcccHHHHHHHHHHHHhccCC
Q 044796 11 LEGNKLFAEGKYEEALLQYEVALRVASV 38 (186)
Q Consensus 11 ~~g~~~~~~~~~~~A~~~~~~al~~~p~ 38 (186)
..+..++..++|..|...|.+++...++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~ 162 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLS 162 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccC
Confidence 3556788999999999999999987654
No 463
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=65.58 E-value=22 Score=21.70 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=28.3
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhcc
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVA 36 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 36 (186)
..+..++..|..+...|+.+.|--+|-+.+.+.
T Consensus 36 rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 36 RSANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 567889999999999999999999998887765
No 464
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.52 E-value=39 Score=27.49 Aligned_cols=61 Identities=16% Similarity=0.073 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcC--------cccHHHHHHHH-------------HHHHHhcCHHHHHHHHHH
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELN--------PTYMKALIRRA-------------EAHEKLEHFEEAIADMKK 132 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg-------------~~~~~~g~~~~A~~~~~~ 132 (186)
.-|..+|.+....+++..|.+++.++.... ..+.+.+..+| .++...|+++++++.+..
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHh
Confidence 678899999999999999999999976542 22333333332 346677778777776655
Q ss_pred HH
Q 044796 133 IL 134 (186)
Q Consensus 133 al 134 (186)
.-
T Consensus 747 t~ 748 (794)
T KOG0276|consen 747 TQ 748 (794)
T ss_pred cC
Confidence 53
No 465
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=65.21 E-value=32 Score=21.75 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=20.8
Q ss_pred HHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Q 044796 77 SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAH 117 (186)
Q Consensus 77 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 117 (186)
..+-..++..-+.+.|...|+..++.+|++..++..+-..+
T Consensus 80 RDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~l 120 (139)
T PF12583_consen 80 RDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNL 120 (139)
T ss_dssp HHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHH
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHcc
Confidence 33333444445556666666666666666666555444433
No 466
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=64.61 E-value=18 Score=22.61 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHH
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKAL 100 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al 100 (186)
.+..|...|..+...|++++|...|+.++
T Consensus 98 ~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 98 LALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp BHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 34888899999999999999999998875
No 467
>PF13934 ELYS: Nuclear pore complex assembly
Probab=64.33 E-value=30 Score=24.14 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=29.9
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 044796 75 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKK 132 (186)
Q Consensus 75 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (186)
.....|..+...+++++|+..+... ...|+. ...+..++...|+.+.|+.+++.
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L~~p-s~~~~~---~~~Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELLSHP-SLIPWF---PDKILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHhCCC-CCCccc---HHHHHHHHHHCCChhHHHHHHHh
Confidence 3445666666667777777666332 112222 22344555556777766666655
No 468
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=64.27 E-value=53 Score=23.85 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 044796 124 EEAIADMKKILEFDPSNNQAKRTILRKLKE 153 (186)
Q Consensus 124 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 153 (186)
+.|...+.+++.++|....+...+..+-..
T Consensus 116 d~A~~~ll~A~~l~pr~~~A~~~m~~~s~~ 145 (277)
T PF13226_consen 116 DQAVAALLKAIELSPRPVAAAIGMINISAY 145 (277)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHhh
Confidence 567778888888888877777766655544
No 469
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=64.04 E-value=63 Score=24.64 Aligned_cols=63 Identities=11% Similarity=-0.009 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhcCcccHH--HHHHH--HHHHHHhcCHHHHHHHHHHHHhc
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMK--ALIRR--AEAHEKLEHFEEAIADMKKILEF 136 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~l--g~~~~~~g~~~~A~~~~~~al~~ 136 (186)
.-....+...+..++|..|...++.....-|.... .+..+ |.-.....++++|.+.+++.+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 44556777888999999999999999985233332 33333 55577889999999999988764
No 470
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=63.26 E-value=59 Score=27.46 Aligned_cols=87 Identities=14% Similarity=0.095 Sum_probs=65.8
Q ss_pred hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccc
Q 044796 85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGM 164 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (186)
..+.-++-+..++.-+.+++.....+..+-.++...|+.++-...-.++-++.|.++..|.....-...+.. .+...+
T Consensus 91 ~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~--s~~~~~ 168 (881)
T KOG0128|consen 91 NEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQ--SEERKE 168 (881)
T ss_pred ccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc--CcchhH
Confidence 344556667788888888888888888888999999999998888888888999999998887765554433 245555
Q ss_pred cchhhhhcc
Q 044796 165 STDNFKAVK 173 (186)
Q Consensus 165 A~~~~~~~~ 173 (186)
....|++++
T Consensus 169 v~~~~ekal 177 (881)
T KOG0128|consen 169 VEELFEKAL 177 (881)
T ss_pred HHHHHHHHh
Confidence 556666664
No 471
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=62.42 E-value=64 Score=24.17 Aligned_cols=106 Identities=12% Similarity=0.062 Sum_probs=59.4
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHH
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICF 83 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 83 (186)
+..+++..+|.-+.+.|+-+.|.+.+.+..+..-.-. ..-+-.-....+|..|
T Consensus 102 ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g---------------------------~kiDVvf~~iRlglfy 154 (393)
T KOG0687|consen 102 EVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLG---------------------------HKIDVVFYKIRLGLFY 154 (393)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcc---------------------------cchhhHHHHHHHHHhh
Confidence 4567778888888888888888887777655432200 0000113344556666
Q ss_pred hhhccHHHHHHHHHHHHhcCcccHH---HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 044796 84 LKLGKFEESIKECTKALELNPTYMK---ALIRRAEAHEKLEHFEEAIADMKKILEF 136 (186)
Q Consensus 84 ~~~~~~~~A~~~~~~al~~~p~~~~---~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (186)
....=..+.+.-.+..++...++.. .-..-|.-.....+|.+|-..|..++.-
T Consensus 155 ~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 155 LDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred ccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccc
Confidence 5554445555555555554443321 1122355556667777777777776643
No 472
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.15 E-value=13 Score=31.21 Aligned_cols=50 Identities=16% Similarity=0.307 Sum_probs=38.4
Q ss_pred HHHhhhccHHHHHHHHHHHHhcCcccH-HHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 044796 81 ICFLKLGKFEESIKECTKALELNPTYM-KALIRRAEAHEKLEHFEEAIADMKKIL 134 (186)
Q Consensus 81 ~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (186)
.+|..+|+|++|+++.... |+.. .++...|..++..++|..|.++|.+..
T Consensus 366 k~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 5788899999998887654 4432 366777888899999998888887764
No 473
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=61.81 E-value=56 Score=23.36 Aligned_cols=130 Identities=13% Similarity=-0.019 Sum_probs=70.7
Q ss_pred HHHHHHhHhHHHHcccHHHHHHHHHHHHhc-----cCCChhhhhccchhhhh-cCc--------hhHHHhhCCCcchhHH
Q 044796 6 ANEAKLEGNKLFAEGKYEEALLQYEVALRV-----ASVPERAESASAPEAKE-GQS--------ASEKKEVAPAPEMAEL 71 (186)
Q Consensus 6 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~-~~~--------~~~~~~~~~~~~~~~~ 71 (186)
.+.++.-+..+.+.|++.-|.+...-.++. .|.+......+..+... ... ..+.+.. ........
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS-~~~~~~~G 88 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWS-KFGSYKFG 88 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH-HTSS-TT-
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-ccCCCCCC
Confidence 345566667778888887776554444332 12223222233322211 100 1122222 22233334
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHH----------------HhcCcccHHHHHHHHHH-HHHhcCHHHHHHHHHHHH
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKA----------------LELNPTYMKALIRRAEA-HEKLEHFEEAIADMKKIL 134 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a----------------l~~~p~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al 134 (186)
++..+..+|..+.+.|++.+|..+|-.. .+-.|.....+..+|.+ +..+|+...|...+...+
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFT 168 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6789999999999999999987776331 12245556666666655 778899999998887777
Q ss_pred hc
Q 044796 135 EF 136 (186)
Q Consensus 135 ~~ 136 (186)
+.
T Consensus 169 ~~ 170 (260)
T PF04190_consen 169 SK 170 (260)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 474
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=61.20 E-value=19 Score=17.69 Aligned_cols=32 Identities=13% Similarity=0.018 Sum_probs=22.6
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhcCHHHH
Q 044796 95 ECTKALELNPTYMKALIRRAEAHEKLEHFEEA 126 (186)
Q Consensus 95 ~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A 126 (186)
.+..++-.+|++...+.-+|..+...|+...|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 35566777777777777777777777777543
No 475
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.10 E-value=20 Score=22.76 Aligned_cols=32 Identities=28% Similarity=0.350 Sum_probs=28.6
Q ss_pred HHHhHhHHHHcccHHHHHHHHHHHHhccCCCh
Q 044796 9 AKLEGNKLFAEGKYEEALLQYEVALRVASVPE 40 (186)
Q Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~ 40 (186)
-.++|..++..|+++++..++-.||...|+..
T Consensus 84 qv~lGE~L~~qg~~e~ga~h~~nAi~vcgqpa 115 (143)
T KOG4056|consen 84 QVQLGEELLAQGNEEEGAEHLANAIVVCGQPA 115 (143)
T ss_pred HHHhHHHHHHccCHHHHHHHHHHHHhhcCCHH
Confidence 45689999999999999999999999999843
No 476
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=60.76 E-value=56 Score=22.98 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHHHh---------hhccHHHHHHHHHHHHhcCccc
Q 044796 69 AELRSICHSNRGICFL---------KLGKFEESIKECTKALELNPTY 106 (186)
Q Consensus 69 ~~~~~~~~~~~a~~~~---------~~~~~~~A~~~~~~al~~~p~~ 106 (186)
....+..+-..|..++ ..++...|+.++++|++++|..
T Consensus 165 d~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 165 DEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 3445677788888773 5568889999999999999864
No 477
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=59.86 E-value=42 Score=21.27 Aligned_cols=44 Identities=20% Similarity=0.135 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 044796 109 ALIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLK 152 (186)
Q Consensus 109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 152 (186)
.+..+-..++..-+.+.|...|...++..|+.-.++..+...+.
T Consensus 78 aLRDfq~~~iaKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 78 ALRDFQCSWIAKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 33334445566667789999999999999999988887765543
No 478
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=59.82 E-value=46 Score=26.33 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Q 044796 110 LIRRAEAHEKLEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNS 157 (186)
Q Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 157 (186)
...+|.--+..|+|.=+.+.+.+++--+|++..+....+.++.++|.+
T Consensus 455 Vl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYq 502 (655)
T COG2015 455 VLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQ 502 (655)
T ss_pred HHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhh
Confidence 456777788899999999999999999999999999999999998876
No 479
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=59.59 E-value=47 Score=25.22 Aligned_cols=62 Identities=18% Similarity=0.099 Sum_probs=47.5
Q ss_pred HHHHHHhhhccHHHHHHHHHHHHhcC-cc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 044796 78 NRGICFLKLGKFEESIKECTKALELN-PT--------YMKALIRRAEAHEKLEHFEEAIADMKKILEFDPS 139 (186)
Q Consensus 78 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 139 (186)
.+-.+|+++++++-+...++.....+ |+ ....+|.+|.++....++.+|...++.|....|.
T Consensus 182 lL~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~ 252 (413)
T COG5600 182 LLFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPW 252 (413)
T ss_pred HHHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChh
Confidence 35578889999888766665433311 22 2357889999999999999999999999998887
No 480
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=58.74 E-value=76 Score=23.88 Aligned_cols=34 Identities=12% Similarity=-0.025 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcc
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKALELNPT 105 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 105 (186)
.+.+|..+|.+....|.++..+..|++|+.....
T Consensus 139 ~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 139 LAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Confidence 4588999999999999999999999999987654
No 481
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=58.09 E-value=11 Score=30.99 Aligned_cols=93 Identities=18% Similarity=0.241 Sum_probs=66.5
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCccc----HHHHHHHHHHHH--HhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 044796 75 CHSNRGICFLKLGKFEESIKECTKALELNPTY----MKALIRRAEAHE--KLEHFEEAIADMKKILEFDPSNNQAKRTIL 148 (186)
Q Consensus 75 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~lg~~~~--~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 148 (186)
....-|...++.+++..+.--|..++.+-|.+ .....+.+.|+. .+|++..++....-++...|.-..+....+
T Consensus 55 ~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~ 134 (748)
T KOG4151|consen 55 ELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRA 134 (748)
T ss_pred HHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhh
Confidence 33445778888889999988888888877733 344555665544 667899999999999999998888877777
Q ss_pred HHHHHHHHHhhccccccchhhhhc
Q 044796 149 RKLKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 149 ~~~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
.+|.. .++++-|.+.....
T Consensus 135 ~~y~a-----l~k~d~a~rdl~i~ 153 (748)
T KOG4151|consen 135 RKYEA-----LNKLDLAVRDLRIV 153 (748)
T ss_pred hHHHH-----HHHHHHHHHHHHHH
Confidence 66666 55555555554333
No 482
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=57.80 E-value=28 Score=18.65 Aligned_cols=59 Identities=24% Similarity=0.246 Sum_probs=38.5
Q ss_pred HHhHhHHHHcccHHHHHHHHHHHHhccCCChhhhhccchhhhhcCchhHHHhhCCCcchhHHHHHHHHHHHHHHhhhccH
Q 044796 10 KLEGNKLFAEGKYEEALLQYEVALRVASVPERAESASAPEAKEGQSASEKKEVAPAPEMAELRSICHSNRGICFLKLGKF 89 (186)
Q Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 89 (186)
+..|..++..|+|-+|-+.++..-...|.. .......-+...-|..+.+.|+.
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~---------------------------~~~~lqglIq~A~a~~h~~~gn~ 55 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGP---------------------------ERDFLQGLIQLAVALYHLRRGNP 55 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CC---------------------------HHHHHHHHHHHHHHHHHHHCTSH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcc---------------------------hHHHHHHHHHHHHHHHHHHhCCH
Confidence 456788899999999999999988765542 11112234444556667778888
Q ss_pred HHHHHH
Q 044796 90 EESIKE 95 (186)
Q Consensus 90 ~~A~~~ 95 (186)
..|...
T Consensus 56 ~gA~~l 61 (62)
T PF03745_consen 56 RGARRL 61 (62)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 877654
No 483
>cd00215 PTS_IIA_lac PTS_IIA, PTS system, lactose/cellobiose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. This family of proteins normally function as a homotrimer, stabilized by a centrally located metal ion. Separation into subunits is thought to occur after phosphorylation.
Probab=57.35 E-value=33 Score=20.40 Aligned_cols=31 Identities=32% Similarity=0.236 Sum_probs=25.3
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhc
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRV 35 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 35 (186)
.+......|....+.|+|++|...++++-+.
T Consensus 14 ~Ars~~~eAl~~a~~g~fe~A~~~l~ea~~~ 44 (97)
T cd00215 14 NARSKALEALKAAKEGDFAEAEELLEEANDS 44 (97)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3566777788889999999999999887654
No 484
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=57.09 E-value=27 Score=19.62 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=23.7
Q ss_pred hhHHHHHHHhHhHHHHcccHHHHHHHHHH
Q 044796 3 LNEANEAKLEGNKLFAEGKYEEALLQYEV 31 (186)
Q Consensus 3 ~~~a~~~~~~g~~~~~~~~~~~A~~~~~~ 31 (186)
++.+..++.-|.-++..|++..|+.++.=
T Consensus 32 ~~mA~~Y~~D~~~fl~~gD~v~Ala~~sY 60 (75)
T PF04010_consen 32 LEMAESYLEDGKYFLEKGDYVNALACFSY 60 (75)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 56788899999999999999999988753
No 485
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=56.66 E-value=40 Score=21.85 Aligned_cols=32 Identities=16% Similarity=0.209 Sum_probs=26.3
Q ss_pred HHHHHHHHHhc-CHHHHHHHHHHHHhcCCCChH
Q 044796 111 IRRAEAHEKLE-HFEEAIADMKKILEFDPSNNQ 142 (186)
Q Consensus 111 ~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~ 142 (186)
..+|..+...| +.+++..+|-+|+.+.|.-..
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~~ 126 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQPQQ 126 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCCHHH
Confidence 35788888888 899999999999998887443
No 486
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=56.14 E-value=20 Score=26.97 Aligned_cols=48 Identities=25% Similarity=0.332 Sum_probs=40.0
Q ss_pred hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHhhccccccchhhhhc
Q 044796 120 LEHFEEAIADMKKILEFDPSNNQAKRTILRKLKEMGNSILGRFGMSTDNFKAV 172 (186)
Q Consensus 120 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~A~~~~~~~ 172 (186)
.+..-+|+-.++.++..+|.|......+.+++.. +|-...|...|...
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~-----LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSL-----LGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-----cCCHHHHHHHHHhc
Confidence 3345679999999999999999999999999999 77777777777543
No 487
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=55.77 E-value=64 Score=22.12 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=30.4
Q ss_pred hHHHHHHHhHhHHHHcccHHHHHHHHHHHHhccCCChhh
Q 044796 4 NEANEAKLEGNKLFAEGKYEEALLQYEVALRVASVPERA 42 (186)
Q Consensus 4 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 42 (186)
.+-..+..+-...+..|+|+.|-++|.-.+...+-+...
T Consensus 39 ~Hl~~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~ 77 (199)
T PF04090_consen 39 QHLRVLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRS 77 (199)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHh
Confidence 345566667777889999999999999999887655543
No 488
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=55.70 E-value=94 Score=24.00 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=26.1
Q ss_pred HHHHhHhHHHHcccHHHHHHHHHHHHhccCC
Q 044796 8 EAKLEGNKLFAEGKYEEALLQYEVALRVASV 38 (186)
Q Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 38 (186)
....+|...+-.++|+.|...|+.+.+-.-.
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~ 240 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKN 240 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhh
Confidence 4566899999999999999999998885544
No 489
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=55.53 E-value=39 Score=20.00 Aligned_cols=31 Identities=29% Similarity=0.232 Sum_probs=24.5
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhc
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRV 35 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 35 (186)
.+......|....+.|+|++|...++++-+.
T Consensus 13 ~Ars~~~eAl~~a~~~~fe~A~~~l~~a~~~ 43 (96)
T PF02255_consen 13 DARSLAMEALKAAREGDFEEAEELLKEADEE 43 (96)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3566777888889999999999999887654
No 490
>TIGR00823 EIIA-LAC phosphotransferase system enzyme II, lactose-specific, factor III. operon. While the Lac permeases consist of two polypeptide chains (IIA and IICB), the Chb permease of E. coli consists of three (IIA, IIB and IIC). In B. subtilis, a PTS permease similar to the Chb permease of E. coli is believed to transport lichenan (a b-1,3;1,4 glucan) degradation products, oligosaccharides of 2-4 glucose units. This model is specific for the IIA subunit of the Lac PTS family.
Probab=55.38 E-value=37 Score=20.29 Aligned_cols=31 Identities=26% Similarity=0.188 Sum_probs=25.0
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhc
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRV 35 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 35 (186)
.+...+..|....+.|+|++|...++++-+.
T Consensus 16 ~Ars~~~eAl~~a~~gdfe~A~~~l~eA~~~ 46 (99)
T TIGR00823 16 DARSKALEALKAAKAGDFAKARALVEQAGMC 46 (99)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3566777788889999999999999887654
No 491
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=55.05 E-value=42 Score=28.18 Aligned_cols=179 Identities=11% Similarity=0.069 Sum_probs=0.0
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhcc-------CCChhhhhccchhh--hhcCchhHHHh-hCCCcchhHHHHH
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRVA-------SVPERAESASAPEA--KEGQSASEKKE-VAPAPEMAELRSI 74 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~ 74 (186)
.++...++-..|....+|+.-++..+..-++- ..+...+++.+.-. ..++...+... +.......+..++
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vapD 279 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAPD 279 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCCc
Q ss_pred HHHHHHHHHhhh---------ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----CCC
Q 044796 75 CHSNRGICFLKL---------GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKILEFD-----PSN 140 (186)
Q Consensus 75 ~~~~~a~~~~~~---------~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----p~~ 140 (186)
+++.-|.+|..+ +..+.|+.+|+++.+..|.........-.+...-..|+...+.-.-.+.++ ..+
T Consensus 280 m~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~sGIN~atLL~aaG~~Fens~Elq~IgmkLn~LlgrKG~ 359 (1226)
T KOG4279|consen 280 MYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYSGINLATLLRAAGEHFENSLELQQIGMKLNSLLGRKGA 359 (1226)
T ss_pred eeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhccccHHHHHHHhhhhccchHHHHHHHHHHHHHhhccch
Q ss_pred hHHHHHHHHHHHHHHHH-hhccccccchhhhhcccCCCCccccc
Q 044796 141 NQAKRTILRKLKEMGNS-ILGRFGMSTDNFKAVKDPNTGAYSIS 183 (186)
Q Consensus 141 ~~~~~~l~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~ 183 (186)
.+-....=.+-.-++.+ +..++..|+..-++....++..|-+.
T Consensus 360 leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLk 403 (1226)
T KOG4279|consen 360 LEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLK 403 (1226)
T ss_pred HHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHH
No 492
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.84 E-value=88 Score=23.42 Aligned_cols=95 Identities=13% Similarity=0.015 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCcc--------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCh
Q 044796 72 RSICHSNRGICFLKLGKFEESIKECTKALELNPT--------YMKALIRRAEAHEKLEHFEEAIADMKKILE--FDPSNN 141 (186)
Q Consensus 72 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~ 141 (186)
...+...+|.+|.+.++|+.|-+.+.- +..+.. -...+..+|.+|...++..+|..+..++-- .+..|.
T Consensus 102 v~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne 180 (399)
T KOG1497|consen 102 VASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNE 180 (399)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCH
Confidence 346778899999999999999766633 333321 124567889999999999999998888743 344666
Q ss_pred HHHHHHHHHHHHHHHHhhccccccchh
Q 044796 142 QAKRTILRKLKEMGNSILGRFGMSTDN 168 (186)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~~~~~~A~~~ 168 (186)
.....+-.|+.+.-+. .++|-+|...
T Consensus 181 ~Lqie~kvc~ARvlD~-krkFlEAAqr 206 (399)
T KOG1497|consen 181 QLQIEYKVCYARVLDY-KRKFLEAAQR 206 (399)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 6666555555544443 4444444433
No 493
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=54.48 E-value=39 Score=24.58 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=55.9
Q ss_pred HhhCCCcchhHHHHHHHHHHHHHHhhh--ccHHHHHHHHHHHHhcCcccHHHHHHHHHHH------HHhcCHHHHHHHHH
Q 044796 60 KEVAPAPEMAELRSICHSNRGICFLKL--GKFEESIKECTKALELNPTYMKALIRRAEAH------EKLEHFEEAIADMK 131 (186)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~a~~~~~~--~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~------~~~g~~~~A~~~~~ 131 (186)
..+...|.+. +.|..+-.+...- .++..-+..-++.+..+|.+--+|..+-.++ ..-.++...+++-.
T Consensus 99 ~~lk~~PK~Y----qiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e~eytt 174 (328)
T COG5536 99 EALKDNPKNY----QIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHELEYTT 174 (328)
T ss_pred HHHhcCCchh----hhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHHHHhHH
Confidence 3444455444 6666665554433 5677777788888888888766665554444 34444555566777
Q ss_pred HHHhcCCCChHHHHHHHH
Q 044796 132 KILEFDPSNNQAKRTILR 149 (186)
Q Consensus 132 ~al~~~p~~~~~~~~l~~ 149 (186)
..+.-++.|+.+|...-.
T Consensus 175 ~~I~tdi~N~SaW~~r~~ 192 (328)
T COG5536 175 SLIETDIYNNSAWHHRYI 192 (328)
T ss_pred HHHhhCCCChHHHHHHHH
Confidence 778889999988887743
No 494
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=54.40 E-value=1.2e+02 Score=24.69 Aligned_cols=46 Identities=7% Similarity=0.077 Sum_probs=29.7
Q ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCCChHHHHHHHHH
Q 044796 105 TYMKALIRRAEAHEKLEHFEEAIADMKKILEF------DPSNNQAKRTILRK 150 (186)
Q Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~ 150 (186)
.+...|..+|-.+++.+++.+|+..|..+-.. ..++.+++..+-.+
T Consensus 316 ~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleI 367 (618)
T PF05053_consen 316 HHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEI 367 (618)
T ss_dssp --SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHH
T ss_pred CccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHH
Confidence 34556777788888889999999888887653 33455666555543
No 495
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=54.20 E-value=86 Score=23.10 Aligned_cols=48 Identities=15% Similarity=0.253 Sum_probs=39.4
Q ss_pred hhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 044796 85 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIADMKKI 133 (186)
Q Consensus 85 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (186)
..+++.+.++.+++.+..+|-..+.++..+.++.++|. +.+.......
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG~-~~~a~aI~~e 158 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLGY-AAVAQAIRDE 158 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCCC-HHHHHHHHHH
Confidence 56778999999999999999999999999999999994 5555444443
No 496
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=53.59 E-value=41 Score=20.32 Aligned_cols=31 Identities=16% Similarity=0.129 Sum_probs=24.9
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhc
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRV 35 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 35 (186)
.+......|....+.|+|++|...+.++-+.
T Consensus 19 ~Ars~~~eAl~~ak~gdf~~A~~~l~eA~~~ 49 (104)
T PRK09591 19 NARTEVHEAFAAMREGNFDLAEQKLNQSNEE 49 (104)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3556677788888999999999999887654
No 497
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.30 E-value=54 Score=20.94 Aligned_cols=32 Identities=13% Similarity=-0.002 Sum_probs=23.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH
Q 044796 112 RRAEAHEKLEHFEEAIADMKKILEFDPSNNQA 143 (186)
Q Consensus 112 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 143 (186)
.+|..+...|+++++..++-.|+.+.|.-...
T Consensus 86 ~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaqL 117 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEHLANAIVVCGQPAQL 117 (143)
T ss_pred HhHHHHHHccCHHHHHHHHHHHHhhcCCHHHH
Confidence 46777777777777777777777777765443
No 498
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=50.78 E-value=86 Score=22.09 Aligned_cols=65 Identities=8% Similarity=0.016 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhhccHHHHHHHHHHHHhcCccc-HHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCC
Q 044796 75 CHSNRGICFLKLGKFEESIKECTKALELNPTY-MKALIRRAEAHE-KLEHFEEAIADMKKILEFDPS 139 (186)
Q Consensus 75 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~ 139 (186)
-+..+|.+..+.|+|++.+.++++++..+|.- .+=...++.+|. -.|....+.+.+.........
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~ 69 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEEN 69 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcc
Confidence 35678899999999999999999999997753 334455566653 445566666666665554433
No 499
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.58 E-value=1.6e+02 Score=25.22 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=24.0
Q ss_pred HHHHHHHhHhHHHHcccHHHHHHHHHHHHhc
Q 044796 5 EANEAKLEGNKLFAEGKYEEALLQYEVALRV 35 (186)
Q Consensus 5 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 35 (186)
.++.+...|.-++..|++++|...|-+.|..
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 4566777788888888888888888887753
No 500
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=50.07 E-value=93 Score=22.27 Aligned_cols=92 Identities=15% Similarity=0.174 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhhccHHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHhcCHH-HHHHHHHHHHhc------CCCCh
Q 044796 74 ICHSNRGICFLKLGKFEESIKECTKALEL-----NPTYMKALIRRAEAHEKLEHFE-EAIADMKKILEF------DPSNN 141 (186)
Q Consensus 74 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~-~A~~~~~~al~~------~p~~~ 141 (186)
+.++.=+..+.+.|++.-|.....-.++. .|.+....-++..++...+.-+ +-.+..+++++- .-.++
T Consensus 11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp 90 (260)
T PF04190_consen 11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDP 90 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--H
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCH
Confidence 34444455555555555554444333322 2223333345555544443222 122222222221 12356
Q ss_pred HHHHHHHHHHHHHHHHhhccccccchhhh
Q 044796 142 QAKRTILRKLKEMGNSILGRFGMSTDNFK 170 (186)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~~~~~~A~~~~~ 170 (186)
..+..+|..+.. .+++.+|..+|-
T Consensus 91 ~LH~~~a~~~~~-----e~~~~~A~~Hfl 114 (260)
T PF04190_consen 91 ELHHLLAEKLWK-----EGNYYEAERHFL 114 (260)
T ss_dssp HHHHHHHHHHHH-----TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHh-----hccHHHHHHHHH
Confidence 667777776666 556666666553
Done!