BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044797
         (173 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
           From Geobacter Metallireducens In Complex With Nadp+
 pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
           From Geobacter Metallireducens In Complex With Nadp+
 pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
           From Geobacter Metallireducens In Complex With Nadp+
 pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
           From Geobacter Metallireducens In Complex With Nadp+
 pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
           From Geobacter Metallireducens In Complex With Nadp+
 pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
           From Geobacter Metallireducens In Complex With Nadp+
 pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
           From Geobacter Metallireducens In Complex With Nadp+
 pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
           From Geobacter Metallireducens In Complex With Nadp+
          Length = 287

 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/103 (26%), Positives = 53/103 (51%)

Query: 4   KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
           K GF+GL      MA +L+++G  V  +  S    ++   LG  R+A+P +  +      
Sbjct: 3   KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPXEVVESCPVTF 62

Query: 64  VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
            +++     +++ FG  GVL+G+ +G   +  ST+ P+  Q++
Sbjct: 63  AMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRI 105


>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
           Dehydrogenase Complexed With Nad+
 pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
           Dehydrogenase Complexed With Nad+
 pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
           Dehydrogenase Complexed With Nad+
 pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
           Dehydrogenase Complexed With Nad+
          Length = 319

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 54/104 (51%)

Query: 5   VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVV 64
           VGF+GL      MA +L++ GY +  +++      +F   G    +SP D  +    ++ 
Sbjct: 25  VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 84

Query: 65  VISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
           ++       + + G  G+LK ++KG+++I  STI P+  ++L K
Sbjct: 85  MLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAK 128


>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
           Dehydrogenase
 pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
           Dehydrogenase
 pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
           Dehydrogenase
 pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
           Dehydrogenase
          Length = 296

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 54/104 (51%)

Query: 5   VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVV 64
           VGF+GL      MA +L++ GY +  +++      +F   G    +SP D  +    ++ 
Sbjct: 3   VGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIIT 62

Query: 65  VISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
           ++       + + G  G+LK ++KG+++I  STI P+  ++L K
Sbjct: 63  MLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAK 106


>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
           From Salmonella Typhimurium Lt2
 pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
           From Salmonella Typhimurium Lt2
          Length = 295

 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 1/104 (0%)

Query: 2   ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSA 61
           A K+GF+GL       A +L R+G+++    I  P+ D+   LG +   +     +    
Sbjct: 3   AXKLGFIGLGIXGSPXAINLARAGHQLHVTTIG-PVADELLSLGAVNVETARQVTEFADI 61

Query: 62  LVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQK 105
           + + +    Q++D+ FG  G  K   +G  I+  S+I P   ++
Sbjct: 62  IFIXVPDTPQVEDVLFGEHGCAKTSLQGKTIVDXSSISPIETKR 105


>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
          From Geobacter Sulfurreducens In Complex With Nadp+
 pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
          From Geobacter Sulfurreducens In Complex With Nadp+
 pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
          From Geobacter Sulfurreducens In Complex With Nadp+
 pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
          From Geobacter Sulfurreducens In Complex With Nadp+
 pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
          From Geobacter Sulfurreducens In Complex With Nadp+
 pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
          From Geobacter Sulfurreducens In Complex With Nadp+
 pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
          From Geobacter Sulfurreducens In Complex With Nadp+
 pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
          From Geobacter Sulfurreducens In Complex With Nadp+
          Length = 287

 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 45/93 (48%)

Query: 6  GFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVV 65
          GF+GL      MAA+L+R+G+ V  +  +         LG  +++SP +        + +
Sbjct: 5  GFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAM 64

Query: 66 ISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI 98
          ++      ++ FG  GVL+G+  G   I  ST+
Sbjct: 65 LADPAAAREVCFGANGVLEGIGGGRGYIDMSTV 97


>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde
           Reductase [salmonella Typhimurium Lt2]
          Length = 299

 Score = 38.9 bits (89), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/101 (23%), Positives = 49/101 (48%), Gaps = 2/101 (1%)

Query: 1   MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDA-GKDV 59
           M  KVGF+GL       + +L+++GY +   +  +P      +  G  +AS   A  +  
Sbjct: 4   MTXKVGFIGLGIXGKPXSKNLLKAGYSLVVSD-RNPEAIADVIAAGAETASTAKAIAEQC 62

Query: 60  SALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILP 100
             ++  + +   + ++  G  G+++G + G V+I  S+I P
Sbjct: 63  DVIITXLPNSPHVKEVALGENGIIEGAKPGTVLIDXSSIAP 103


>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
 pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
 pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
 pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
          Length = 316

 Score = 37.7 bits (86), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/95 (23%), Positives = 41/95 (43%)

Query: 4   KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
           K+GF+GL      + ++L++ G+ V  +  +    D F   G     +P +         
Sbjct: 32  KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 91

Query: 64  VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI 98
             +S      D+  G  GVL+G++ G   +  ST+
Sbjct: 92  ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTV 126


>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase
           (Ygbj) From Salmonella Typhimurium
          Length = 303

 Score = 35.8 bits (81), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 1/96 (1%)

Query: 17  MAASLIRSGYKVQAFEISDPLVDKFFMLGGI-RSASPMDAGKDVSALVVVISHVDQIDDI 75
            A S +R+G      +++          G    +AS  +    V ALV+++ +  Q+  +
Sbjct: 22  AARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQV 81

Query: 76  FFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFT 111
            FG +GV    + G+ + + STI  +  Q++    T
Sbjct: 82  LFGEDGVAHLXKPGSAVXVSSTISSADAQEIAAALT 117


>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
           Dehydrogenase Involved In Nicotinate Fermentation
 pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
           Dehydrogenase Involved In Nicotinate Fermentation
 pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
           Dehydrogenase Involved In Nicotinate Fermentation
 pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
           Dehydrogenase Involved In Nicotinate Fermentation
          Length = 301

 Score = 35.4 bits (80), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 26/105 (24%), Positives = 46/105 (43%)

Query: 4   KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
           K+GF+GL      MA +L++ G  V AF++ +  V      G     +          + 
Sbjct: 6   KIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIF 65

Query: 64  VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
             + +   ++ +  G  GVL   + G VI+  S++ PS   K+ K
Sbjct: 66  TSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAK 110


>pdb|3OJL|A Chain A, Native Structure Of The Udp-N-Acetyl-Mannosamine
           Dehydrogenase Cap5o From Staphylococcus Aureus
 pdb|3OJL|B Chain B, Native Structure Of The Udp-N-Acetyl-Mannosamine
           Dehydrogenase Cap5o From Staphylococcus Aureus
 pdb|3OJO|A Chain A, Derivative Structure Of The Udp-N-Acetyl-Mannosamine
           Dehydrogenase Cap5o From S. Aureus
 pdb|3OJO|B Chain B, Derivative Structure Of The Udp-N-Acetyl-Mannosamine
           Dehydrogenase Cap5o From S. Aureus
          Length = 431

 Score = 34.7 bits (78), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 80  EGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLI 125
           + +L  L+KG  II++STI P  M    K    NL F I E ++L+
Sbjct: 113 DSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLV 158


>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
           (Atglyr1)
          Length = 310

 Score = 33.9 bits (76), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 49/109 (44%)

Query: 4   KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
           +VGF+GL      M+ +L+++G+KV  +  +    D+    G     SP +  K     +
Sbjct: 23  EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTI 82

Query: 64  VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG 112
            ++S       + F   GVL+ + +G   I  ST+      K+ +  TG
Sbjct: 83  AMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITG 131


>pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From
           Pseudomonas Aeruginosa Pao1 In Complex With Nad
          Length = 299

 Score = 33.9 bits (76), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 22/103 (21%), Positives = 50/103 (48%)

Query: 4   KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
           ++ F+GL       A +L+++GY +  F++    VD     G   + S  DA +    ++
Sbjct: 4   QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 63

Query: 64  VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
             +     ++ ++   +G+L  +  G +++  STI P+  +K+
Sbjct: 64  SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKI 106


>pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate
           Dehydrogenase From Pseudomonas Aeruginosa Pao1
          Length = 300

 Score = 33.5 bits (75), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 22/103 (21%), Positives = 50/103 (48%)

Query: 4   KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
           ++ F+GL       A +L+++GY +  F++    VD     G   + S  DA +    ++
Sbjct: 5   QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 64

Query: 64  VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
             +     ++ ++   +G+L  +  G +++  STI P+  +K+
Sbjct: 65  SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKI 107


>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Poly- Alanine
          Length = 908

 Score = 27.7 bits (60), Expect = 3.0,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 21/80 (26%)

Query: 64  VVISHVDQIDDIFFGHEGVLKG----------------LQKGAVIILQSTILPSHMQKLE 107
           V+I H  +++    GH  VL+G                L +  V+ L+ ++ P HM ++E
Sbjct: 53  VIIIHSKKLNYTTQGHMVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEME 112

Query: 108 KTFTGNLT-----FYILERM 122
             F G L      FY  E M
Sbjct: 113 SEFQGELADDLAGFYRSEYM 132


>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Cleaved Poly-Alanine
 pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Substance P
          Length = 908

 Score = 27.7 bits (60), Expect = 3.0,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 21/80 (26%)

Query: 64  VVISHVDQIDDIFFGHEGVLKG----------------LQKGAVIILQSTILPSHMQKLE 107
           V+I H  +++    GH  VL+G                L +  V+ L+ ++ P HM ++E
Sbjct: 53  VIIIHSKKLNYTTQGHMVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEME 112

Query: 108 KTFTGNLT-----FYILERM 122
             F G L      FY  E M
Sbjct: 113 SEFQGELADDLAGFYRSEYM 132


>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
 pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Alanine
 pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Bestatin
          Length = 909

 Score = 27.7 bits (60), Expect = 3.0,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 21/80 (26%)

Query: 64  VVISHVDQIDDIFFGHEGVLKG----------------LQKGAVIILQSTILPSHMQKLE 107
           V+I H  +++    GH  VL+G                L +  V+ L+ ++ P HM ++E
Sbjct: 54  VIIIHSKKLNYTTQGHMVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEME 113

Query: 108 KTFTGNLT-----FYILERM 122
             F G L      FY  E M
Sbjct: 114 SEFQGELADDLAGFYRSEYM 133


>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
           A Porcine Respiratory Coronavirus In Complex With The
           Pig Aminopeptidase N Ectodomain
 pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
           A Porcine Respiratory Coronavirus In Complex With The
           Pig Aminopeptidase N Ectodomain
          Length = 959

 Score = 27.7 bits (60), Expect = 3.0,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 21/80 (26%)

Query: 64  VVISHVDQIDDIFFGHEGVLKG----------------LQKGAVIILQSTILPSHMQKLE 107
           V+I H  +++    GH  VL+G                L +  V+ L+ ++ P HM ++E
Sbjct: 97  VIIIHSKKLNYTTQGHMVVLRGVGDSQVPEIDRTELVELTEYLVVHLKGSLQPGHMYEME 156

Query: 108 KTFTGNLT-----FYILERM 122
             F G L      FY  E M
Sbjct: 157 SEFQGELADDLAGFYRSEYM 176


>pdb|2O56|A Chain A, Crystal Structure Of A Member Of The Enolase Superfamily
           From Salmonella Typhimurium
 pdb|2O56|B Chain B, Crystal Structure Of A Member Of The Enolase Superfamily
           From Salmonella Typhimurium
 pdb|2O56|C Chain C, Crystal Structure Of A Member Of The Enolase Superfamily
           From Salmonella Typhimurium
 pdb|2O56|D Chain D, Crystal Structure Of A Member Of The Enolase Superfamily
           From Salmonella Typhimurium
 pdb|2O56|E Chain E, Crystal Structure Of A Member Of The Enolase Superfamily
           From Salmonella Typhimurium
 pdb|2O56|F Chain F, Crystal Structure Of A Member Of The Enolase Superfamily
           From Salmonella Typhimurium
 pdb|2O56|G Chain G, Crystal Structure Of A Member Of The Enolase Superfamily
           From Salmonella Typhimurium
 pdb|2O56|H Chain H, Crystal Structure Of A Member Of The Enolase Superfamily
           From Salmonella Typhimurium
          Length = 407

 Score = 27.7 bits (60), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 9   GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDA-GKDVSALVVVIS 67
           G D   VD  A      +  Q   ++ PL DK   LG  R A+  DA G DV  +  + +
Sbjct: 167 GYDAIKVDTVAMDRHGNWNQQ--NLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHA 224

Query: 68  HVDQIDDIFFGH 79
             D    I FG 
Sbjct: 225 FTDTTSAIQFGR 236


>pdb|4B6G|A Chain A, The Crystal Structure Of The Neisserial Esterase D.
 pdb|4B6G|B Chain B, The Crystal Structure Of The Neisserial Esterase D
          Length = 283

 Score = 27.3 bits (59), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 13/24 (54%), Positives = 15/24 (62%)

Query: 18  AASLIRSGYKVQAFEISDPLVDKF 41
           A SLI+ GYKVQ   I   L D+F
Sbjct: 208 ANSLIQQGYKVQGMRIDQGLEDEF 231


>pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate
           Dehydrogenase From Dyadobacter Fermentans
 pdb|4GBJ|B Chain B, Crystal Structure Of Nad-Binding 6-Phosphogluconate
           Dehydrogenase From Dyadobacter Fermentans
 pdb|4GBJ|C Chain C, Crystal Structure Of Nad-Binding 6-Phosphogluconate
           Dehydrogenase From Dyadobacter Fermentans
 pdb|4GBJ|D Chain D, Crystal Structure Of Nad-Binding 6-Phosphogluconate
           Dehydrogenase From Dyadobacter Fermentans
          Length = 297

 Score = 27.3 bits (59), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 22/107 (20%), Positives = 49/107 (45%), Gaps = 2/107 (1%)

Query: 2   ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSA 61
           + K+ F+GL      +A  L+ +GY++  +  +    +    LG     + +DA      
Sbjct: 5   SEKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGI 64

Query: 62  LVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
           +  V++    ++++F     +++ L K  V +  STI P   ++L +
Sbjct: 65  VFSVLADDAAVEELFSXE--LVEKLGKDGVHVSXSTISPETSRQLAQ 109


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.142    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,736,125
Number of Sequences: 62578
Number of extensions: 179772
Number of successful extensions: 464
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 446
Number of HSP's gapped (non-prelim): 23
length of query: 173
length of database: 14,973,337
effective HSP length: 92
effective length of query: 81
effective length of database: 9,216,161
effective search space: 746509041
effective search space used: 746509041
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (23.1 bits)