BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044797
(173 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0A9V9|YIHU_SHIFL Uncharacterized oxidoreductase YihU OS=Shigella flexneri GN=yihU
PE=3 SV=1
Length = 298
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 58/104 (55%)
Query: 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSAL 62
+ + F+GL + MA++L++ G++++ F+++ V G +A+P A KD +
Sbjct: 2 AAIAFIGLGQMGSPMASNLLQQGHQLRVFDVNAEAVRHLVDKGATPAANPAQAAKDAEFI 61
Query: 63 VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
+ ++ + D + ++ FG GV +GL A++I STI P KL
Sbjct: 62 ITMLPNGDLVRNVLFGENGVCEGLSTDALVIDMSTIHPLQTDKL 105
>sp|P0A9V8|YIHU_ECOLI Uncharacterized oxidoreductase YihU OS=Escherichia coli (strain
K12) GN=yihU PE=3 SV=1
Length = 298
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 58/104 (55%)
Query: 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSAL 62
+ + F+GL + MA++L++ G++++ F+++ V G +A+P A KD +
Sbjct: 2 AAIAFIGLGQMGSPMASNLLQQGHQLRVFDVNAEAVRHLVDKGATPAANPAQAAKDAEFI 61
Query: 63 VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
+ ++ + D + ++ FG GV +GL A++I STI P KL
Sbjct: 62 ITMLPNGDLVRNVLFGENGVCEGLSTDALVIDMSTIHPLQTDKL 105
>sp|P29266|3HIDH_RAT 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus
norvegicus GN=Hibadh PE=1 SV=3
Length = 335
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 1 MASK--VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKD 58
MASK VGF+GL MA +LI+ GY + +++ + +F G ++SP D +
Sbjct: 35 MASKTPVGFIGLGNMGNPMAKNLIKHGYPLILYDVFPDVCKEFKEAGEQVASSPADVAEK 94
Query: 59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
++ ++ +++ G G+LK ++KG+++I STI PS ++L K
Sbjct: 95 ADRIITMLPSSMNSIEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAK 144
>sp|Q99L13|3HIDH_MOUSE 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus
GN=Hibadh PE=2 SV=1
Length = 335
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 1 MASK--VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKD 58
MASK VGF+GL MA +L++ GY + +++ + +F G ++SP + +
Sbjct: 35 MASKTPVGFIGLGNMGNPMAKNLMKHGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEK 94
Query: 59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
++ ++ +++ G G+LK ++KG+++I STI PS ++L K
Sbjct: 95 ADRIITMLPSSMNAVEVYSGANGILKKVKKGSLLIDSSTIDPSVSKELAK 144
>sp|Q9L7S0|YIHU_SALTY Uncharacterized oxidoreductase YihU OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=yihU PE=3 SV=1
Length = 298
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 54/102 (52%)
Query: 5 VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVV 64
+ F+GL + MA++L++ G+++ F+++ V + G ++SP A ++
Sbjct: 4 IAFIGLGQMGSPMASNLLKQGHQLSVFDVNPDAVQRLVDKGAQPASSPAQATIGAEFVIT 63
Query: 65 VISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
++ + D + + FG +GV + L + A++I STI P L
Sbjct: 64 MLPNGDLVRSVLFGEQGVCETLSREALVIDMSTIHPLQTDNL 105
>sp|Q9V8M5|3HIDH_DROME Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial
OS=Drosophila melanogaster GN=CG15093 PE=2 SV=2
Length = 324
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSA 61
A +GFVGL +MA++LI++G+K+ F+IS P D G A + K+
Sbjct: 28 AKNIGFVGLGNMGANMASNLIKAGHKLHVFDISKPACDGLAAKGATVYAKTSELAKNSDF 87
Query: 62 LVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI 118
++ ++ + +D + E G+ K + I STI P ++ L+K + +I
Sbjct: 88 VITMLPNNAIVDASY--DEMTADGVNKDTIFIDSSTISPDLVKSLQKKISAKGARFI 142
>sp|Q9SUC0|3HIDH_ARATH Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial
OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3
Length = 347
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 5 VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVV 64
VGF+GL M +LIR+GYKV +I+ ++ F +G +P + +D ++
Sbjct: 40 VGFIGLGNMGFRMVNNLIRAGYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVIT 99
Query: 65 VISHVDQIDDIFFGHEGVLKGLQ--KGAVIILQSTILPSHMQKL 106
++ + D++ G G+L G + A+ I STI P +K+
Sbjct: 100 MLPSSSHVMDVYTGTNGLLLGENDIRPALFIDSSTIDPQTTRKI 143
>sp|P77161|GLXR_ECOLI 2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain
K12) GN=glxR PE=2 SV=1
Length = 292
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Query: 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
K+GF+GL MA +L R+G+++ I P+ D+ LG + + + +
Sbjct: 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIG-PVADELLSLGAVSVETARQVTEASDIIF 60
Query: 64 VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
+++ Q++++ FG G K KG I+ S+I P ++ +
Sbjct: 61 IMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFAR 105
>sp|Q54CX6|3HIDH_DICDI Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial
OS=Dictyostelium discoideum GN=hibA PE=3 SV=1
Length = 321
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 54/102 (52%)
Query: 5 VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVV 64
VGF+GL A +LI+ G+ + F++S +++ G + SP + K+ +V
Sbjct: 25 VGFIGLGNMGGHQAINLIKKGHNLIVFDMSKDNMNRLKEKGAKIANSPAEVAKEADVIVT 84
Query: 65 VISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
++ + +++ G G+ + ++ G +++ STI P+ +++
Sbjct: 85 MLPASAHVKNVYCGENGIFQTVRPGTLLLDSSTIDPATAREV 126
>sp|O34948|YKWC_BACSU Uncharacterized oxidoreductase YkwC OS=Bacillus subtilis (strain
168) GN=ykwC PE=3 SV=1
Length = 288
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/106 (21%), Positives = 53/106 (50%)
Query: 1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVS 60
M +GF+GL MA+ ++ G+ V + + + G I + D K+
Sbjct: 1 MKKTIGFIGLGVMGKSMASHILNDGHPVLVYTRTKEKAESILQKGAIWKDTVKDLSKEAD 60
Query: 61 ALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
++ ++ + +++++FG G+++ ++GA +I +T PS +K+
Sbjct: 61 VIITMVGYPSDVEEVYFGSNGIIENAKEGAYLIDMTTSKPSLAKKI 106
>sp|Q2HJD7|3HIDH_BOVIN 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Bos taurus
GN=HIBADH PE=2 SV=1
Length = 336
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 1 MASK--VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKD 58
MASK VGF+G+ MA +L++ GY + +++ +F G +SP D +
Sbjct: 36 MASKTPVGFIGVGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEK 95
Query: 59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
++ ++ + + G G+LK ++KG+++I STI P ++L K
Sbjct: 96 ADRIITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPMVSKELAK 145
>sp|P31937|3HIDH_HUMAN 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Homo sapiens
GN=HIBADH PE=1 SV=2
Length = 336
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 55/106 (51%)
Query: 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSAL 62
+ VGF+GL MA +L++ GY + +++ +F G +SP D + +
Sbjct: 40 TPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRI 99
Query: 63 VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
+ ++ + + G G+LK ++KG+++I STI P+ ++L K
Sbjct: 100 ITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAK 145
>sp|Q5R5E7|3HIDH_PONAB 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Pongo abelii
GN=HIBADH PE=2 SV=1
Length = 336
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 55/106 (51%)
Query: 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSAL 62
+ VGF+GL MA +L++ GY + +++ +F G +SP D + +
Sbjct: 40 TPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRI 99
Query: 63 VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
+ ++ + + G G+LK ++KG+++I STI P+ ++L K
Sbjct: 100 ITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAK 145
>sp|O33730|Y1503_SHEFN Uncharacterized oxidoreductase Sfri_1503 OS=Shewanella
frigidimarina (strain NCIMB 400) GN=Sfri_1503 PE=3 SV=2
Length = 291
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 1/96 (1%)
Query: 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF-MLGGIRSASPMDAGKDVSA 61
+KV F+GL MA L++ G+ V + + ++ GG ++ +P DA +
Sbjct: 2 AKVAFIGLGVMGFPMAGHLVKQGHDVTVYNRTGAKATQWVEQYGGKKADTPKDAAQGQDI 61
Query: 62 LVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQST 97
+ + + D + + G G++ G+ GA+++ +T
Sbjct: 62 VFTCVGNDDDLRQVVLGEHGIVHGMHAGAILVDHTT 97
>sp|O34969|YFJR_BACSU Uncharacterized oxidoreductase YfjR OS=Bacillus subtilis (strain
168) GN=yfjR PE=3 SV=2
Length = 286
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/115 (20%), Positives = 54/115 (46%)
Query: 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
K+ +GL +A +++++GY++ + + + G + +P A K ++
Sbjct: 2 KIAVIGLGNMGQPIARNVLQAGYELTVYNRTKQKTEDLVTEGAQAADTPRLAAKSADIVI 61
Query: 64 VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI 118
+++ D + + FG +G+L+GL + + I STI +KL F++
Sbjct: 62 TMLADDDSVSTVTFGEDGLLEGLAENGIHISMSTISVEFSEKLAAAHAEKGQFFL 116
>sp|Q46888|YGBJ_ECOLI Uncharacterized oxidoreductase YgbJ OS=Escherichia coli (strain
K12) GN=ygbJ PE=3 SV=1
Length = 302
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 3/110 (2%)
Query: 5 VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG--GIRSASPMDAGKDVSAL 62
VG VGL + A S +R+G +++ G G+ + A K + AL
Sbjct: 9 VGIVGLGSMGMGAALSYVRAGLSTWGADLNSNACATLKEAGACGVSDNAATFAEK-LDAL 67
Query: 63 VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG 112
+V++ + Q+ + FG GV + L+ G +++ STI + Q++ G
Sbjct: 68 LVLVVNAAQVKQVLFGETGVAQHLKPGTAVMVSSTIASADAQEIATALAG 117
>sp|P0ABQ2|GARR_ECOLI 2-hydroxy-3-oxopropionate reductase OS=Escherichia coli (strain
K12) GN=garR PE=1 SV=1
Length = 294
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDA-GKDVSAL 62
KVGF+GL M+ +L+++GY + + +P + G +AS A + +
Sbjct: 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVAD-RNPEAIADVIAAGAETASTAKAIAEQCDVI 60
Query: 63 VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILP 100
+ ++ + + ++ G G+++G + G V+I S+I P
Sbjct: 61 ITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAP 98
>sp|P0ABQ3|GARR_ECOL6 2-hydroxy-3-oxopropionate reductase OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=garR PE=3 SV=1
Length = 294
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Query: 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDA-GKDVSAL 62
KVGF+GL M+ +L+++GY + + +P + G +AS A + +
Sbjct: 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVAD-RNPEAIADVIAAGAETASTAKAIAEQCDVI 60
Query: 63 VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILP 100
+ ++ + + ++ G G+++G + G V+I S+I P
Sbjct: 61 ITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAP 98
>sp|P28811|MMSB_PSEAE 3-hydroxyisobutyrate dehydrogenase OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=mmsB PE=2 SV=1
Length = 298
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 51/104 (49%)
Query: 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSAL 62
+ + F+GL MAA+L+++G++V F++ V G + S + + +
Sbjct: 2 TDIAFLGLGNMGGPMAANLLKAGHRVNVFDLQPKAVLGLVEQGAQGADSALQCCEGAEVV 61
Query: 63 VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
+ ++ ++ ++ G +G+L + ++I STI P +K+
Sbjct: 62 ISMLPAGQHVESLYLGDDGLLARVAGKPLLIDCSTIAPETARKV 105
>sp|Q562D5|GLYR1_XENTR Putative oxidoreductase GLYR1 OS=Xenopus tropicalis GN=glyr1 PE=2
SV=1
Length = 534
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/105 (21%), Positives = 46/105 (43%)
Query: 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
K+GF+GL + ++L++ G+ V + + D F G +P +
Sbjct: 250 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGAHMGRTPAEVVSTCDITF 309
Query: 64 VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
++ D+ G GVL+G++ G + ST+ P + +L +
Sbjct: 310 ACVADPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDPETVAELAQ 354
>sp|Q9SZE1|3HID1_ARATH Probable 3-hydroxyisobutyrate dehydrogenase-like 1, mitochondrial
OS=Arabidopsis thaliana GN=At4g29120 PE=2 SV=1
Length = 334
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSAL 62
+K+G++G M LI++GY V F + +G + SP + +
Sbjct: 38 TKIGWIGTGVMGRSMCGHLIKAGYTVTVFNRTISKAQTLIDMGANVADSPNSVAEQSDVV 97
Query: 63 VVVISHVDQIDDIFFGHE-GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI 118
++ + + + + G L GL++G V++ +T PS +++ K + F I
Sbjct: 98 FTIVGYPSDVRHVLLDPKSGALSGLRQGGVLVDMTTSEPSLAEEIAKAASFKNCFSI 154
>sp|Q5RKN4|GLYR1_DANRE Putative oxidoreductase GLYR1 OS=Danio rerio GN=glyr1 PE=2 SV=1
Length = 462
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 47/108 (43%)
Query: 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
++GF+GL + ++L++ G+ V + + D F G +P +
Sbjct: 177 RIGFLGLGLMGSGVVSNLLKMGHVVTVWNRTAEKCDLFIQEGARLGRTPAEVVSMCDITF 236
Query: 64 VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFT 111
+S D+ G GVL+G++ G + ST+ P + +L + T
Sbjct: 237 SCVSDPKAARDLVLGPSGVLQGIRPGKCYVEMSTVDPETITELSQVIT 284
>sp|Q5RKH0|GLYR1_RAT Putative oxidoreductase GLYR1 OS=Rattus norvegicus GN=Glyr1 PE=2
SV=1
Length = 552
Score = 37.7 bits (86), Expect = 0.037, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 41/95 (43%)
Query: 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
K+GF+GL + ++L++ G+ V + + D F G +P +
Sbjct: 268 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 327
Query: 64 VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI 98
+S D+ G GVL+G++ G + ST+
Sbjct: 328 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTV 362
>sp|Q49A26|GLYR1_HUMAN Putative oxidoreductase GLYR1 OS=Homo sapiens GN=GLYR1 PE=1 SV=3
Length = 553
Score = 37.7 bits (86), Expect = 0.037, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 41/95 (43%)
Query: 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
K+GF+GL + ++L++ G+ V + + D F G +P +
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328
Query: 64 VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI 98
+S D+ G GVL+G++ G + ST+
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTV 363
>sp|Q5ZLS7|GLYR1_CHICK Putative oxidoreductase GLYR1 OS=Gallus gallus GN=GLYR1 PE=2 SV=1
Length = 553
Score = 37.7 bits (86), Expect = 0.037, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 41/95 (43%)
Query: 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
K+GF+GL + ++L++ G+ V + + D F G +P +
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328
Query: 64 VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI 98
+S D+ G GVL+G++ G + ST+
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTV 363
>sp|A4FUF0|GLYR1_BOVIN Putative oxidoreductase GLYR1 OS=Bos taurus GN=GLYR1 PE=2 SV=1
Length = 553
Score = 37.7 bits (86), Expect = 0.037, Method: Composition-based stats.
Identities = 22/95 (23%), Positives = 41/95 (43%)
Query: 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
K+GF+GL + ++L++ G+ V + + D F G +P +
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328
Query: 64 VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI 98
+S D+ G GVL+G++ G + ST+
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTV 363
>sp|Q9XTI0|3HIDH_CAEEL Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial
OS=Caenorhabditis elegans GN=B0250.5 PE=3 SV=1
Length = 299
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%)
Query: 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSAL 62
S GF+GL MA +LI++G K+ ++++ +V +F G +A P D +
Sbjct: 2 SLTGFIGLGNMGGHMARNLIKNGKKLIVYDVNKAVVQEFKAEGCEVAAHPADIAAASKEI 61
Query: 63 VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI 98
+ V+ + ++ G G+ K +Q G + + STI
Sbjct: 62 ITVLPSSPHVKAVYQGEAGIFKTIQPGTLCMDSSTI 97
>sp|Q0QLF5|HMGD_EUBBA 2-(hydroxymethyl)glutarate dehydrogenase OS=Eubacterium barkeri
GN=Hgd PE=1 SV=1
Length = 301
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%)
Query: 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
K+GF+GL MA +L++ G V AF++ + V G + +
Sbjct: 6 KIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIF 65
Query: 64 VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEK 108
+ + ++ + G GVL + G VI+ S++ PS K+ K
Sbjct: 66 TSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAK 110
>sp|Q5R7T2|GLYR1_PONAB Putative oxidoreductase GLYR1 OS=Pongo abelii GN=GLYR1 PE=2 SV=2
Length = 553
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 41/95 (43%)
Query: 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
K+GF+GL + ++L++ G+ V ++ + D F G +P +
Sbjct: 269 KIGFLGLGLMGSGIVSNLLKMGHTVTVWDRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 328
Query: 64 VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI 98
+S D+ G GVL+G++ + ST+
Sbjct: 329 ACVSDPKAAKDLVLGPSGVLQGIRPRKCYVDMSTV 363
>sp|Q9LSV0|GLYR1_ARATH Glyoxylate/succinic semialdehyde reductase 1 OS=Arabidopsis
thaliana GN=GLYR1 PE=1 SV=1
Length = 289
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 49/109 (44%)
Query: 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
+VGF+GL M+ +L+++G+KV + + D+ G SP + K +
Sbjct: 2 EVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTI 61
Query: 64 VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG 112
++S + F GVL+ + +G I ST+ K+ + TG
Sbjct: 62 AMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITG 110
>sp|Q9C991|3HID2_ARATH Probable 3-hydroxyisobutyrate dehydrogenase-like 2, mitochondrial
OS=Arabidopsis thaliana GN=At1g71170 PE=2 SV=1
Length = 299
Score = 33.5 bits (75), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/90 (20%), Positives = 41/90 (45%)
Query: 17 MAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIF 76
M + ++ +GY V + GG + SP + G+ + ++ + + + +
Sbjct: 28 MVSHILAAGYSVTVYARDLRKTKDLQTKGGRTANSPKELGEMSDVVFTIVGNSNDVRSLL 87
Query: 77 FGHEGVLKGLQKGAVIILQSTILPSHMQKL 106
G +GVL GL+ G V + ++ P +++
Sbjct: 88 LGDDGVLSGLKPGGVTVDMTSSKPGLAREI 117
>sp|Q7TQ07|DPOLN_MOUSE DNA polymerase nu OS=Mus musculus GN=Poln PE=2 SV=2
Length = 864
Score = 33.1 bits (74), Expect = 0.97, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 44 LGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI----- 98
LG + A MDA K +ALVV + + D + + L KG V++L+S +
Sbjct: 203 LGDLAKAQLMDALKQAAALVVTLMYKDGSTQL--SAKEALTCTVKGIVVLLKSHVGNSTL 260
Query: 99 -LPSHMQKLEKTF 110
LP+H LEK F
Sbjct: 261 TLPAHGGALEKDF 273
>sp|Q8T079|GLYR1_DROME Putative oxidoreductase GLYR1 homolog OS=Drosophila melanogaster
GN=CG4747 PE=1 SV=1
Length = 602
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 6 GFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVV 65
GF+GL + LI +G+KV + + F G +PMD + +
Sbjct: 319 GFLGLGMMGSTIVKDLIYTGHKVVVWNRTIDKCQPFAEAGAEVKDTPMDVVEAADVIFCC 378
Query: 66 ISHVDQIDDIFFGHEGV--LKGLQKGAVIILQSTILP 100
+S D+ FG+ GV LK L A + + STI P
Sbjct: 379 VSDPKGAKDLVFGNCGVLQLKDLNNKAYVEM-STIDP 414
>sp|Q29NG1|GLYR1_DROPS Putative oxidoreductase GLYR1 homolog OS=Drosophila pseudoobscura
pseudoobscura GN=GA18401 PE=3 SV=2
Length = 612
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 6 GFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVV 65
GF+GL + LI +G+KV + + F G +PMD + +
Sbjct: 329 GFLGLGMMGSTIVKDLIYTGHKVVVWNRTIDKCQPFVEAGAEVKDTPMDVVEAADIIFCC 388
Query: 66 ISHVDQIDDIFFGHEGV--LKGLQKGAVIILQSTILP 100
+S D+ FG+ GV LK L+ A + + ST+ P
Sbjct: 389 VSDPKGAKDLVFGNCGVLQLKDLRNKAYVEM-STVDP 424
>sp|Q7Q161|GLYR1_ANOGA Putative oxidoreductase GLYR1 homolog OS=Anopheles gambiae
GN=AGAP009949 PE=3 SV=5
Length = 566
Score = 32.3 bits (72), Expect = 1.5, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 36/80 (45%)
Query: 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALV 63
K GF+GL + +LI+SG+ V + S KF +G + +P D +
Sbjct: 282 KFGFLGLGVMGCGIVKNLIKSGHSVVVWNRSAHKCRKFQEVGAEVADTPSDVVEMTDVTY 341
Query: 64 VVISHVDQIDDIFFGHEGVL 83
+S D+ FG+ GV+
Sbjct: 342 SCVSDPQVAKDMVFGNCGVM 361
>sp|Q7VQH3|ENO_BLOFL Enolase OS=Blochmannia floridanus GN=eno PE=3 SV=1
Length = 447
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 9/127 (7%)
Query: 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSAL 62
+K GF GL SV +SL G + +A E+ D +FF G +S + +++ VS L
Sbjct: 27 TKSGFFGL--ASVPSGSSL---GSQ-EALELRDNDHARFFGKGVKKSVNIINSTIRVSLL 80
Query: 63 VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERM 122
+ ++ ID+I +G Q GA IL ++ + K +F G + + R+
Sbjct: 81 NIDVTKQSVIDEIMINLDGTNNKSQLGANSILSVSLA---IAKAAASFMGMPLYQYIARL 137
Query: 123 FLISSSI 129
+ +SS++
Sbjct: 138 YGMSSNV 144
>sp|P58258|REGA_CLOAB HTH-type transcriptional regulator RegA OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=regA PE=3 SV=1
Length = 334
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/83 (22%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSAL 62
+K+ +VG++ + A ++I GYK + + PL + GG+++ D
Sbjct: 180 NKIAYVGVNPKLKNNARAIIYEGYKKALLDNNIPLNENLIQFGGLKAIDGTDG------- 232
Query: 63 VVVISHVDQIDDIFFGHEGVLKG 85
+ VI ++ID +F + + G
Sbjct: 233 INVIIKKEKIDAVFCACDEIAMG 255
>sp|O83351|6PGD_TREPA 6-phosphogluconate dehydrogenase, decarboxylating OS=Treponema
pallidum (strain Nichols) GN=gnd PE=3 SV=1
Length = 488
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVS 60
M + +GF+GL ++ ++ R+G+ V F + +VD+F L G + ++
Sbjct: 1 MGADIGFIGLAVMGENLVLNIERNGFSVAVFNRTTTVVDRF--LAGRAHGKRITGAHSIA 58
Query: 61 ALVVVISHVDQI 72
LV +++ +I
Sbjct: 59 ELVSLLARPRKI 70
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.326 0.142 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,988,963
Number of Sequences: 539616
Number of extensions: 2357869
Number of successful extensions: 6579
Number of sequences better than 100.0: 42
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 6541
Number of HSP's gapped (non-prelim): 42
length of query: 173
length of database: 191,569,459
effective HSP length: 109
effective length of query: 64
effective length of database: 132,751,315
effective search space: 8496084160
effective search space used: 8496084160
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)