Query 044797
Match_columns 173
No_of_seqs 197 out of 1965
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:51:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044797.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044797hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2084 MmsB 3-hydroxyisobutyr 100.0 4.8E-36 1E-40 230.0 19.1 167 3-170 1-182 (286)
2 PF03446 NAD_binding_2: NAD bi 100.0 4.7E-33 1E-37 200.0 16.0 148 2-150 1-163 (163)
3 KOG0409 Predicted dehydrogenas 100.0 2.1E-32 4.6E-37 207.4 17.1 166 3-169 36-216 (327)
4 PLN02350 phosphogluconate dehy 100.0 2.3E-30 5.1E-35 212.5 18.3 166 2-171 6-200 (493)
5 PRK15461 NADH-dependent gamma- 100.0 7.7E-30 1.7E-34 199.3 20.3 166 3-169 2-181 (296)
6 PRK15059 tartronate semialdehy 100.0 9.9E-30 2.2E-34 198.2 19.4 165 3-169 1-179 (292)
7 PRK12490 6-phosphogluconate de 100.0 1.2E-28 2.5E-33 192.9 18.8 164 3-170 1-183 (299)
8 PTZ00142 6-phosphogluconate de 100.0 2.9E-28 6.3E-33 199.8 18.8 166 2-171 1-194 (470)
9 PRK09599 6-phosphogluconate de 100.0 6.5E-28 1.4E-32 188.9 18.7 163 3-169 1-183 (301)
10 TIGR01692 HIBADH 3-hydroxyisob 100.0 7.6E-28 1.6E-32 187.5 18.5 161 7-168 1-175 (288)
11 PRK11559 garR tartronate semia 100.0 1.7E-27 3.8E-32 186.1 20.5 167 1-168 1-181 (296)
12 PLN02858 fructose-bisphosphate 100.0 4.8E-28 1E-32 218.2 19.6 166 3-169 5-187 (1378)
13 TIGR00873 gnd 6-phosphoglucona 100.0 2.5E-27 5.5E-32 194.3 17.4 164 4-171 1-191 (467)
14 TIGR00872 gnd_rel 6-phosphoglu 100.0 5.9E-27 1.3E-31 183.2 18.4 163 3-170 1-182 (298)
15 TIGR01505 tartro_sem_red 2-hyd 100.0 2E-26 4.3E-31 179.8 19.3 164 4-168 1-178 (291)
16 PLN02858 fructose-bisphosphate 99.9 2E-26 4.3E-31 207.8 20.3 168 1-169 323-507 (1378)
17 COG1023 Gnd Predicted 6-phosph 99.9 4.2E-26 9E-31 168.2 16.3 160 3-166 1-179 (300)
18 PRK09287 6-phosphogluconate de 99.9 3.1E-25 6.7E-30 181.4 17.0 155 13-171 1-183 (459)
19 PRK12491 pyrroline-5-carboxyla 99.9 5.1E-25 1.1E-29 170.0 17.1 162 1-172 1-189 (272)
20 COG0345 ProC Pyrroline-5-carbo 99.9 1.1E-24 2.3E-29 166.0 15.7 160 2-172 1-186 (266)
21 PLN02688 pyrroline-5-carboxyla 99.9 1.3E-23 2.8E-28 161.9 17.0 157 3-171 1-185 (266)
22 PRK07679 pyrroline-5-carboxyla 99.9 4.9E-23 1.1E-27 159.8 17.0 157 3-171 4-190 (279)
23 PRK07680 late competence prote 99.9 8.9E-22 1.9E-26 152.3 16.2 159 3-167 1-185 (273)
24 PRK06928 pyrroline-5-carboxyla 99.9 1.9E-21 4.1E-26 150.7 16.1 160 2-171 1-188 (277)
25 PRK11880 pyrroline-5-carboxyla 99.9 1.8E-20 3.8E-25 144.5 16.0 158 1-171 1-186 (267)
26 COG0362 Gnd 6-phosphogluconate 99.9 6.4E-21 1.4E-25 149.6 13.3 158 2-163 3-187 (473)
27 TIGR03026 NDP-sugDHase nucleot 99.9 2.4E-20 5.2E-25 151.9 15.4 161 3-167 1-216 (411)
28 PTZ00431 pyrroline carboxylate 99.8 3.7E-20 8.1E-25 142.3 13.3 153 3-172 4-182 (260)
29 PRK15182 Vi polysaccharide bio 99.8 1.3E-19 2.8E-24 147.7 15.0 163 3-168 7-217 (425)
30 PRK07634 pyrroline-5-carboxyla 99.8 3.9E-19 8.4E-24 135.4 16.6 157 3-171 5-190 (245)
31 PRK11064 wecC UDP-N-acetyl-D-m 99.8 2.3E-19 4.9E-24 146.1 15.9 159 3-168 4-221 (415)
32 PRK15057 UDP-glucose 6-dehydro 99.8 6.1E-19 1.3E-23 142.3 15.7 160 3-168 1-206 (388)
33 PRK09260 3-hydroxybutyryl-CoA 99.8 1.3E-18 2.8E-23 135.6 15.5 146 2-149 1-181 (288)
34 PRK12557 H(2)-dependent methyl 99.8 8E-18 1.7E-22 133.5 17.3 160 3-166 1-208 (342)
35 PRK06129 3-hydroxyacyl-CoA deh 99.8 1.3E-17 2.8E-22 131.2 17.2 150 2-155 2-188 (308)
36 PRK00094 gpsA NAD(P)H-dependen 99.8 6.1E-18 1.3E-22 133.6 15.2 140 2-145 1-173 (325)
37 PRK14618 NAD(P)H-dependent gly 99.8 8E-18 1.7E-22 133.4 15.6 138 2-147 4-174 (328)
38 PRK08268 3-hydroxy-acyl-CoA de 99.8 4.9E-18 1.1E-22 141.2 14.9 142 3-150 8-187 (507)
39 PRK07531 bifunctional 3-hydrox 99.8 1.4E-17 3E-22 138.5 17.6 145 1-149 3-180 (495)
40 PRK06476 pyrroline-5-carboxyla 99.8 2.3E-17 5E-22 126.7 16.2 152 3-170 1-176 (258)
41 PRK07530 3-hydroxybutyryl-CoA 99.8 9.9E-18 2.1E-22 130.9 13.9 142 3-150 5-184 (292)
42 PRK07819 3-hydroxybutyryl-CoA 99.8 2.9E-17 6.2E-22 127.9 15.5 143 3-148 6-185 (286)
43 PLN02545 3-hydroxybutyryl-CoA 99.8 3.7E-17 8.1E-22 127.8 15.6 146 3-150 5-184 (295)
44 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.8 2E-17 4.3E-22 137.4 14.6 142 3-150 6-185 (503)
45 PRK14806 bifunctional cyclohex 99.8 4.7E-17 1E-21 141.2 17.2 163 1-171 2-204 (735)
46 TIGR01724 hmd_rel H2-forming N 99.8 6.5E-17 1.4E-21 125.2 15.9 143 3-148 1-191 (341)
47 TIGR00465 ilvC ketol-acid redu 99.7 7.1E-17 1.5E-21 126.8 14.6 158 3-171 4-202 (314)
48 PRK07417 arogenate dehydrogena 99.7 1.5E-16 3.2E-21 123.5 14.9 149 3-159 1-185 (279)
49 KOG2653 6-phosphogluconate deh 99.7 3.1E-17 6.8E-22 127.4 10.9 157 3-163 7-191 (487)
50 PF03807 F420_oxidored: NADP o 99.7 2.4E-17 5.2E-22 108.2 8.2 89 4-97 1-95 (96)
51 PRK06035 3-hydroxyacyl-CoA deh 99.7 3.5E-16 7.5E-21 122.2 15.6 161 3-169 4-204 (291)
52 PRK07502 cyclohexadienyl dehyd 99.7 7E-16 1.5E-20 121.3 16.9 154 2-160 6-198 (307)
53 KOG3124 Pyrroline-5-carboxylat 99.7 1.3E-16 2.8E-21 119.3 11.6 160 3-172 1-187 (267)
54 PRK06130 3-hydroxybutyryl-CoA 99.7 8.2E-16 1.8E-20 121.0 16.7 146 2-151 4-181 (311)
55 PRK07066 3-hydroxybutyryl-CoA 99.7 7.6E-16 1.6E-20 121.2 15.1 142 3-148 8-182 (321)
56 PRK08293 3-hydroxybutyryl-CoA 99.7 7.2E-16 1.6E-20 120.1 14.7 143 2-149 3-184 (287)
57 PRK08507 prephenate dehydrogen 99.7 1.4E-15 3.1E-20 117.8 15.1 143 3-154 1-172 (275)
58 PRK08655 prephenate dehydrogen 99.7 2.9E-15 6.3E-20 122.8 17.4 153 3-160 1-182 (437)
59 PRK06545 prephenate dehydrogen 99.7 3.6E-15 7.8E-20 119.6 16.5 153 3-160 1-193 (359)
60 PRK14619 NAD(P)H-dependent gly 99.7 2.6E-15 5.6E-20 118.1 13.9 127 3-146 5-150 (308)
61 PLN02256 arogenate dehydrogena 99.6 1.9E-14 4.1E-19 112.8 17.1 138 2-145 36-198 (304)
62 PRK08229 2-dehydropantoate 2-r 99.6 9.9E-15 2.1E-19 116.2 15.1 155 1-164 1-190 (341)
63 PRK05808 3-hydroxybutyryl-CoA 99.6 1.6E-14 3.4E-19 112.3 15.8 142 3-149 4-182 (282)
64 PF03721 UDPG_MGDP_dh_N: UDP-g 99.6 4.2E-15 9.1E-20 108.7 10.8 107 3-112 1-137 (185)
65 TIGR00112 proC pyrroline-5-car 99.6 1E-14 2.2E-19 111.3 12.5 137 26-172 10-169 (245)
66 PRK07574 formate dehydrogenase 99.6 1.3E-14 2.8E-19 116.8 12.1 112 3-116 193-304 (385)
67 PLN03139 formate dehydrogenase 99.6 2.2E-14 4.8E-19 115.3 12.1 112 3-116 200-311 (386)
68 PRK11199 tyrA bifunctional cho 99.6 3.1E-14 6.6E-19 114.7 12.5 130 2-152 98-244 (374)
69 PF02737 3HCDH_N: 3-hydroxyacy 99.6 3E-14 6.6E-19 103.8 11.3 137 4-145 1-173 (180)
70 TIGR01915 npdG NADPH-dependent 99.6 1.3E-13 2.7E-18 103.6 14.8 146 3-154 1-193 (219)
71 PLN02712 arogenate dehydrogena 99.6 1.1E-13 2.4E-18 118.5 16.1 111 2-118 369-481 (667)
72 PF02826 2-Hacid_dh_C: D-isome 99.6 2.1E-14 4.6E-19 104.5 9.7 111 3-116 37-147 (178)
73 PF10727 Rossmann-like: Rossma 99.6 9.6E-15 2.1E-19 100.2 6.9 95 3-101 11-109 (127)
74 PF01210 NAD_Gly3P_dh_N: NAD-d 99.6 4.2E-14 9.2E-19 100.9 10.1 91 4-98 1-105 (157)
75 PRK13243 glyoxylate reductase; 99.5 5.4E-14 1.2E-18 111.6 11.1 109 3-115 151-259 (333)
76 PRK12480 D-lactate dehydrogena 99.5 9E-14 2E-18 110.2 12.1 108 3-116 147-254 (330)
77 COG0287 TyrA Prephenate dehydr 99.5 2.7E-13 5.9E-18 104.8 14.4 139 1-144 2-164 (279)
78 COG0677 WecC UDP-N-acetyl-D-ma 99.5 3.6E-13 7.8E-18 106.6 14.5 111 1-112 8-144 (436)
79 COG2085 Predicted dinucleotide 99.5 4.2E-13 9E-18 98.5 13.6 145 2-151 1-181 (211)
80 PLN02353 probable UDP-glucose 99.5 4.8E-13 1E-17 110.4 15.4 108 2-112 1-143 (473)
81 COG0240 GpsA Glycerol-3-phosph 99.5 3.8E-13 8.3E-18 105.0 13.7 136 2-141 1-168 (329)
82 PRK12439 NAD(P)H-dependent gly 99.5 1.6E-12 3.4E-17 103.7 17.0 159 2-165 7-198 (341)
83 PRK06436 glycerate dehydrogena 99.5 1.3E-13 2.9E-18 107.9 10.3 105 3-115 123-228 (303)
84 PRK06522 2-dehydropantoate 2-r 99.5 1E-12 2.2E-17 102.8 14.3 160 3-168 1-191 (304)
85 PRK14620 NAD(P)H-dependent gly 99.5 2E-12 4.3E-17 102.5 15.9 92 3-98 1-108 (326)
86 PLN02712 arogenate dehydrogena 99.5 6.1E-13 1.3E-17 113.9 13.5 110 3-118 53-164 (667)
87 PRK08605 D-lactate dehydrogena 99.5 2.7E-13 5.9E-18 107.6 10.5 109 3-116 147-256 (332)
88 cd01065 NAD_bind_Shikimate_DH 99.5 2.7E-13 5.8E-18 96.2 9.4 113 3-121 20-139 (155)
89 PRK15469 ghrA bifunctional gly 99.5 1.7E-13 3.7E-18 107.8 8.9 110 3-116 137-246 (312)
90 PRK12921 2-dehydropantoate 2-r 99.5 2.3E-12 4.9E-17 101.0 15.1 162 3-170 1-196 (305)
91 PRK05479 ketol-acid reductoiso 99.5 2.4E-12 5.1E-17 101.5 14.0 134 3-144 18-174 (330)
92 COG1250 FadB 3-hydroxyacyl-CoA 99.5 1.1E-12 2.4E-17 102.2 11.9 139 1-145 2-177 (307)
93 PRK13403 ketol-acid reductoiso 99.5 5.5E-13 1.2E-17 104.1 10.0 89 3-95 17-105 (335)
94 TIGR01327 PGDH D-3-phosphoglyc 99.5 5.7E-13 1.2E-17 111.6 10.8 111 3-116 139-249 (525)
95 COG0111 SerA Phosphoglycerate 99.4 6.2E-13 1.3E-17 104.9 9.7 111 3-116 143-253 (324)
96 PRK13581 D-3-phosphoglycerate 99.4 8.6E-13 1.9E-17 110.6 10.7 109 3-115 141-249 (526)
97 PTZ00345 glycerol-3-phosphate 99.4 7.6E-12 1.6E-16 100.2 14.9 92 3-98 12-131 (365)
98 COG1052 LdhA Lactate dehydroge 99.4 1.6E-12 3.4E-17 102.6 10.6 109 3-115 147-255 (324)
99 PRK08269 3-hydroxybutyryl-CoA 99.4 3.2E-12 7E-17 100.7 12.0 136 13-152 1-182 (314)
100 PLN02928 oxidoreductase family 99.4 1.9E-12 4.2E-17 103.3 10.1 110 3-115 160-281 (347)
101 PRK11730 fadB multifunctional 99.4 1.5E-11 3.3E-16 106.5 15.6 141 3-148 314-491 (715)
102 TIGR03376 glycerol3P_DH glycer 99.4 4.1E-11 8.8E-16 95.4 16.2 91 4-98 1-118 (342)
103 PRK15409 bifunctional glyoxyla 99.4 4.7E-12 1E-16 100.1 10.7 109 3-115 146-255 (323)
104 TIGR02440 FadJ fatty oxidation 99.4 2.6E-11 5.7E-16 104.7 15.8 148 3-158 305-490 (699)
105 PRK00257 erythronate-4-phospha 99.4 3.4E-12 7.4E-17 102.7 9.5 105 3-114 117-225 (381)
106 PRK11790 D-3-phosphoglycerate 99.4 4.7E-12 1E-16 103.1 10.2 108 3-116 152-259 (409)
107 TIGR02437 FadB fatty oxidation 99.4 2.8E-11 6.2E-16 104.6 15.4 141 3-148 314-491 (714)
108 COG1004 Ugd Predicted UDP-gluc 99.4 7.4E-11 1.6E-15 93.8 16.5 112 3-114 1-138 (414)
109 PRK13302 putative L-aspartate 99.4 1E-11 2.2E-16 96.1 11.4 109 3-118 7-120 (271)
110 PRK08410 2-hydroxyacid dehydro 99.4 5.2E-12 1.1E-16 99.5 10.0 107 3-116 146-252 (311)
111 TIGR02441 fa_ox_alpha_mit fatt 99.4 1.6E-11 3.5E-16 106.4 13.4 137 3-145 336-509 (737)
112 PRK08818 prephenate dehydrogen 99.3 5.6E-11 1.2E-15 95.3 14.9 125 2-145 4-149 (370)
113 PRK13304 L-aspartate dehydroge 99.3 2E-11 4.3E-16 94.2 11.8 109 2-117 1-116 (265)
114 PRK11154 fadJ multifunctional 99.3 6.2E-11 1.4E-15 102.6 15.4 141 3-148 310-488 (708)
115 PF07991 IlvN: Acetohydroxy ac 99.3 1.4E-11 3E-16 87.0 8.8 90 3-96 5-95 (165)
116 PRK15438 erythronate-4-phospha 99.3 1.5E-11 3.3E-16 98.7 9.6 105 3-114 117-225 (378)
117 PRK06487 glycerate dehydrogena 99.3 2.1E-11 4.5E-16 96.3 9.7 105 3-116 149-253 (317)
118 TIGR02853 spore_dpaA dipicolin 99.3 6.1E-11 1.3E-15 92.4 11.9 107 3-119 152-260 (287)
119 PRK06932 glycerate dehydrogena 99.3 2.3E-11 5E-16 95.9 9.5 106 3-116 148-253 (314)
120 cd01075 NAD_bind_Leu_Phe_Val_D 99.3 1.3E-10 2.8E-15 86.1 12.5 132 3-144 29-174 (200)
121 PLN02306 hydroxypyruvate reduc 99.3 4.2E-11 9.1E-16 96.7 10.6 111 3-115 166-291 (386)
122 PRK05708 2-dehydropantoate 2-r 99.3 1.8E-10 3.8E-15 90.7 13.1 165 1-170 1-195 (305)
123 KOG0069 Glyoxylate/hydroxypyru 99.3 6.2E-11 1.3E-15 93.1 10.3 108 3-113 163-270 (336)
124 PRK06249 2-dehydropantoate 2-r 99.2 3.6E-10 7.9E-15 89.2 13.8 161 2-169 5-204 (313)
125 PRK06141 ornithine cyclodeamin 99.2 9.1E-11 2E-15 92.6 8.4 110 3-121 126-243 (314)
126 PF01408 GFO_IDH_MocA: Oxidore 99.2 7.1E-10 1.5E-14 75.2 10.7 109 3-118 1-117 (120)
127 PF02153 PDH: Prephenate dehyd 99.2 1.4E-09 3E-14 83.7 13.3 124 17-145 1-152 (258)
128 COG1893 ApbA Ketopantoate redu 99.1 2.1E-09 4.7E-14 84.5 14.1 162 3-170 1-195 (307)
129 KOG2304 3-hydroxyacyl-CoA dehy 99.1 2.1E-10 4.5E-15 84.9 7.6 138 3-145 12-191 (298)
130 COG4007 Predicted dehydrogenas 99.1 7.8E-09 1.7E-13 77.9 14.5 144 2-148 1-192 (340)
131 PRK14194 bifunctional 5,10-met 99.1 5.9E-10 1.3E-14 86.7 8.1 73 3-98 160-233 (301)
132 PRK08306 dipicolinate synthase 99.1 1.6E-09 3.5E-14 84.8 10.7 107 3-119 153-261 (296)
133 TIGR00507 aroE shikimate 5-deh 99.0 2E-09 4.2E-14 83.4 8.6 115 3-123 118-239 (270)
134 PF02558 ApbA: Ketopantoate re 99.0 3E-09 6.4E-14 75.1 8.1 101 5-111 1-115 (151)
135 TIGR02371 ala_DH_arch alanine 99.0 3.7E-09 8E-14 83.9 9.4 91 3-101 129-227 (325)
136 PRK13301 putative L-aspartate 99.0 1.2E-08 2.5E-13 78.0 11.5 108 1-116 1-116 (267)
137 PRK00048 dihydrodipicolinate r 99.0 8.8E-09 1.9E-13 79.2 10.5 132 2-143 1-136 (257)
138 COG1748 LYS9 Saccharopine dehy 98.9 1.3E-08 2.9E-13 81.8 11.6 111 2-120 1-122 (389)
139 TIGR00936 ahcY adenosylhomocys 98.9 1.6E-08 3.5E-13 82.0 11.8 101 3-110 196-297 (406)
140 PRK14188 bifunctional 5,10-met 98.9 5E-09 1.1E-13 81.6 8.4 72 3-98 159-232 (296)
141 PF00670 AdoHcyase_NAD: S-aden 98.9 1.3E-08 2.8E-13 72.3 9.0 92 3-101 24-115 (162)
142 PTZ00075 Adenosylhomocysteinas 98.9 2E-08 4.3E-13 82.5 11.2 92 3-101 255-346 (476)
143 PRK13303 L-aspartate dehydroge 98.9 3E-08 6.5E-13 76.5 11.0 109 2-117 1-116 (265)
144 KOG0068 D-3-phosphoglycerate d 98.9 1.5E-08 3.2E-13 79.1 9.1 106 3-112 147-252 (406)
145 COG0673 MviM Predicted dehydro 98.9 4.9E-08 1.1E-12 77.5 12.0 135 1-145 2-148 (342)
146 KOG2380 Prephenate dehydrogena 98.8 2.6E-08 5.7E-13 77.9 9.6 105 3-112 53-159 (480)
147 PRK07340 ornithine cyclodeamin 98.8 2.8E-08 6E-13 78.2 9.8 91 3-102 126-223 (304)
148 PLN02494 adenosylhomocysteinas 98.8 3.1E-08 6.6E-13 81.3 10.3 100 3-109 255-355 (477)
149 cd05213 NAD_bind_Glutamyl_tRNA 98.8 2.5E-08 5.4E-13 78.7 9.2 91 3-97 179-274 (311)
150 PRK05476 S-adenosyl-L-homocyst 98.8 4.2E-08 9.1E-13 80.1 10.7 99 3-108 213-312 (425)
151 PRK05225 ketol-acid reductoiso 98.8 9E-09 1.9E-13 83.7 6.5 88 3-95 37-130 (487)
152 COG0059 IlvC Ketol-acid reduct 98.8 3.5E-08 7.5E-13 76.1 8.6 87 3-93 19-106 (338)
153 TIGR00036 dapB dihydrodipicoli 98.8 1.7E-07 3.6E-12 72.5 12.4 131 3-140 2-146 (266)
154 COG1712 Predicted dinucleotide 98.8 1.5E-07 3.1E-12 69.9 11.2 106 3-115 1-113 (255)
155 PRK06407 ornithine cyclodeamin 98.8 4.4E-08 9.5E-13 77.0 9.1 109 3-120 118-236 (301)
156 PRK06823 ornithine cyclodeamin 98.8 5.7E-08 1.2E-12 76.7 9.7 92 3-102 129-228 (315)
157 PRK08618 ornithine cyclodeamin 98.8 8E-08 1.7E-12 76.3 10.2 91 3-102 128-227 (325)
158 cd00401 AdoHcyase S-adenosyl-L 98.8 1.1E-07 2.3E-12 77.5 10.9 89 3-98 203-291 (413)
159 PF01488 Shikimate_DH: Shikima 98.7 2.6E-08 5.7E-13 69.3 6.1 89 3-96 13-109 (135)
160 TIGR01921 DAP-DH diaminopimela 98.7 1.7E-07 3.7E-12 73.9 11.1 105 3-116 4-115 (324)
161 PRK14179 bifunctional 5,10-met 98.7 4.2E-08 9.2E-13 75.9 7.6 73 3-98 159-232 (284)
162 COG2423 Predicted ornithine cy 98.7 8.8E-08 1.9E-12 75.7 9.3 110 3-120 131-249 (330)
163 PRK10206 putative oxidoreducta 98.7 5.5E-07 1.2E-11 72.0 13.8 134 2-145 1-145 (344)
164 PRK11579 putative oxidoreducta 98.7 5E-07 1.1E-11 72.3 12.7 106 3-117 5-118 (346)
165 PF02423 OCD_Mu_crystall: Orni 98.7 8E-08 1.7E-12 75.9 7.7 93 3-101 129-229 (313)
166 PF01113 DapB_N: Dihydrodipico 98.7 8.6E-08 1.9E-12 65.7 6.7 102 3-111 1-114 (124)
167 PRK06046 alanine dehydrogenase 98.7 1.5E-07 3.1E-12 74.8 8.9 90 3-101 130-228 (326)
168 TIGR02992 ectoine_eutC ectoine 98.7 2E-07 4.2E-12 74.1 9.6 90 3-100 130-228 (326)
169 PRK06223 malate dehydrogenase; 98.7 6E-07 1.3E-11 70.7 12.1 65 2-67 2-79 (307)
170 TIGR01763 MalateDH_bact malate 98.7 1.2E-06 2.7E-11 68.9 13.8 131 3-144 2-161 (305)
171 PRK07589 ornithine cyclodeamin 98.6 1.7E-07 3.7E-12 74.8 8.6 94 3-102 130-231 (346)
172 TIGR01761 thiaz-red thiazoliny 98.6 9.7E-07 2.1E-11 70.5 12.5 109 3-119 4-120 (343)
173 TIGR00518 alaDH alanine dehydr 98.6 1.9E-07 4.2E-12 75.3 8.5 93 3-97 168-268 (370)
174 PLN02819 lysine-ketoglutarate 98.6 5.3E-07 1.1E-11 80.6 11.8 112 2-121 569-703 (1042)
175 smart00859 Semialdhyde_dh Semi 98.6 2.3E-07 4.9E-12 63.3 7.4 91 4-98 1-101 (122)
176 PRK08291 ectoine utilization p 98.6 4.8E-07 1E-11 72.0 9.6 90 3-100 133-231 (330)
177 PRK00045 hemA glutamyl-tRNA re 98.6 1.9E-07 4.1E-12 76.7 7.1 68 3-70 183-254 (423)
178 PRK00258 aroE shikimate 5-dehy 98.6 5.3E-07 1.1E-11 70.1 9.3 115 3-121 124-244 (278)
179 PRK06444 prephenate dehydrogen 98.6 5.1E-07 1.1E-11 66.7 8.4 63 3-101 1-64 (197)
180 cd05292 LDH_2 A subgroup of L- 98.5 3.8E-06 8.3E-11 66.3 13.8 67 3-69 1-78 (308)
181 PRK09310 aroDE bifunctional 3- 98.5 4.3E-07 9.2E-12 75.7 8.6 104 3-121 333-439 (477)
182 PRK12549 shikimate 5-dehydroge 98.5 4.3E-07 9.4E-12 70.8 8.0 113 3-121 128-250 (284)
183 PRK06199 ornithine cyclodeamin 98.5 4.6E-07 1E-11 73.3 8.4 90 3-97 156-260 (379)
184 cd01080 NAD_bind_m-THF_DH_Cycl 98.5 5.8E-07 1.3E-11 64.8 7.6 72 3-97 45-117 (168)
185 PLN00203 glutamyl-tRNA reducta 98.5 2.6E-07 5.6E-12 77.4 6.6 67 3-69 267-340 (519)
186 TIGR01035 hemA glutamyl-tRNA r 98.5 3.4E-07 7.3E-12 75.1 6.2 68 3-70 181-252 (417)
187 PF03435 Saccharop_dh: Sacchar 98.4 1.4E-06 3.1E-11 70.6 9.1 107 5-119 1-120 (386)
188 cd05291 HicDH_like L-2-hydroxy 98.4 2.1E-06 4.6E-11 67.6 9.6 66 3-68 1-78 (306)
189 cd01076 NAD_bind_1_Glu_DH NAD( 98.4 2.8E-06 6E-11 64.2 9.7 109 2-121 31-159 (227)
190 PTZ00117 malate dehydrogenase; 98.4 8.4E-06 1.8E-10 64.6 12.7 63 3-66 6-81 (319)
191 cd00650 LDH_MDH_like NAD-depen 98.4 1.1E-05 2.4E-10 62.2 13.1 138 5-153 1-176 (263)
192 PRK00436 argC N-acetyl-gamma-g 98.4 1.1E-06 2.5E-11 70.2 7.9 90 1-98 1-101 (343)
193 TIGR00745 apbA_panE 2-dehydrop 98.4 1.3E-05 2.9E-10 62.3 13.5 92 13-111 2-107 (293)
194 TIGR03215 ac_ald_DH_ac acetald 98.4 2.9E-06 6.3E-11 66.0 9.5 90 3-99 2-98 (285)
195 KOG2305 3-hydroxyacyl-CoA dehy 98.4 1.8E-06 4E-11 64.3 7.9 138 3-143 4-177 (313)
196 PRK04148 hypothetical protein; 98.4 5.2E-06 1.1E-10 57.4 9.7 90 3-97 18-112 (134)
197 COG0569 TrkA K+ transport syst 98.4 1.2E-06 2.6E-11 66.1 7.0 67 3-69 1-77 (225)
198 PRK10669 putative cation:proto 98.4 6.3E-06 1.4E-10 70.0 12.1 108 3-119 418-533 (558)
199 KOG2741 Dimeric dihydrodiol de 98.4 1.1E-05 2.4E-10 63.6 12.3 111 3-120 7-129 (351)
200 PF00056 Ldh_1_N: lactate/mala 98.4 3.6E-06 7.9E-11 58.9 8.6 65 3-67 1-78 (141)
201 COG0373 HemA Glutamyl-tRNA red 98.4 1.3E-06 2.7E-11 70.9 7.0 67 3-69 179-249 (414)
202 PRK13940 glutamyl-tRNA reducta 98.3 1.1E-06 2.5E-11 71.8 6.5 68 3-70 182-254 (414)
203 PTZ00082 L-lactate dehydrogena 98.3 1.9E-05 4.2E-10 62.6 13.3 63 3-66 7-82 (321)
204 PRK03659 glutathione-regulated 98.3 9.2E-06 2E-10 69.6 11.8 108 3-119 401-516 (601)
205 COG0289 DapB Dihydrodipicolina 98.3 2E-05 4.3E-10 60.1 12.2 131 1-140 1-145 (266)
206 PRK08300 acetaldehyde dehydrog 98.3 6.1E-06 1.3E-10 64.6 9.7 90 3-99 5-104 (302)
207 PF13380 CoA_binding_2: CoA bi 98.3 1.8E-06 3.9E-11 58.5 5.8 106 3-122 1-110 (116)
208 PRK06270 homoserine dehydrogen 98.3 5.5E-06 1.2E-10 66.3 9.5 116 1-118 1-148 (341)
209 cd01078 NAD_bind_H4MPT_DH NADP 98.3 3.5E-06 7.5E-11 62.0 7.8 91 3-99 29-132 (194)
210 PRK06349 homoserine dehydrogen 98.3 5.1E-06 1.1E-10 68.3 9.4 110 3-118 4-127 (426)
211 PRK04207 glyceraldehyde-3-phos 98.3 5.9E-06 1.3E-10 66.1 9.4 89 2-97 1-110 (341)
212 PRK00066 ldh L-lactate dehydro 98.3 2.3E-05 5E-10 62.0 12.6 65 3-67 7-82 (315)
213 PF02254 TrkA_N: TrkA-N domain 98.3 2.1E-05 4.5E-10 52.8 10.7 71 5-75 1-79 (116)
214 TIGR00561 pntA NAD(P) transhyd 98.3 7.9E-06 1.7E-10 68.2 10.2 92 3-97 165-285 (511)
215 PRK09496 trkA potassium transp 98.3 8.2E-06 1.8E-10 67.4 10.3 68 3-70 1-77 (453)
216 cd05211 NAD_bind_Glu_Leu_Phe_V 98.3 1E-05 2.2E-10 60.7 9.5 109 3-121 24-150 (217)
217 cd05297 GH4_alpha_glucosidase_ 98.3 1.7E-06 3.6E-11 71.1 5.7 66 3-68 1-84 (423)
218 cd01339 LDH-like_MDH L-lactate 98.3 5.3E-06 1.1E-10 65.2 8.3 62 5-67 1-75 (300)
219 PRK06718 precorrin-2 dehydroge 98.3 1.8E-05 3.8E-10 58.8 10.6 109 3-112 11-142 (202)
220 PF01118 Semialdhyde_dh: Semia 98.2 3E-06 6.4E-11 57.8 5.8 88 4-98 1-99 (121)
221 TIGR01809 Shik-DH-AROM shikima 98.2 1E-05 2.2E-10 63.1 9.4 117 3-121 126-254 (282)
222 PRK14175 bifunctional 5,10-met 98.2 6E-06 1.3E-10 64.2 8.0 73 3-98 159-232 (286)
223 PF01262 AlaDh_PNT_C: Alanine 98.2 6.8E-06 1.5E-10 59.2 7.6 93 3-97 21-140 (168)
224 PRK09424 pntA NAD(P) transhydr 98.2 9.3E-06 2E-10 67.9 9.2 93 3-97 166-286 (509)
225 cd05191 NAD_bind_amino_acid_DH 98.2 1.2E-05 2.5E-10 51.5 7.6 61 3-95 24-85 (86)
226 PRK03562 glutathione-regulated 98.2 3.6E-05 7.8E-10 66.2 12.0 107 3-118 401-515 (621)
227 cd05293 LDH_1 A subgroup of L- 98.2 0.00012 2.6E-09 57.9 14.1 64 3-67 4-80 (312)
228 COG1064 AdhP Zn-dependent alco 98.1 2E-05 4.4E-10 62.5 8.9 73 3-76 168-246 (339)
229 KOG2711 Glycerol-3-phosphate d 98.1 1.5E-05 3.3E-10 62.6 7.8 91 3-97 22-140 (372)
230 cd00300 LDH_like L-lactate deh 98.1 0.0001 2.2E-09 58.0 12.6 129 5-144 1-158 (300)
231 PF03447 NAD_binding_3: Homose 98.1 9.1E-06 2E-10 54.9 5.4 103 9-118 1-115 (117)
232 TIGR01850 argC N-acetyl-gamma- 98.1 1.8E-05 3.9E-10 63.5 7.6 89 3-98 1-101 (346)
233 COG0169 AroE Shikimate 5-dehyd 98.0 2.9E-05 6.3E-10 60.4 8.3 112 3-121 127-249 (283)
234 COG0686 Ald Alanine dehydrogen 98.0 1.4E-05 2.9E-10 62.3 6.2 91 3-96 169-268 (371)
235 PRK14189 bifunctional 5,10-met 98.0 2.8E-05 6.2E-10 60.4 7.9 73 3-98 159-232 (285)
236 TIGR01470 cysG_Nterm siroheme 98.0 8.4E-05 1.8E-09 55.3 10.1 110 3-112 10-142 (205)
237 cd01483 E1_enzyme_family Super 98.0 7.2E-05 1.6E-09 52.3 9.1 111 4-122 1-122 (143)
238 cd05294 LDH-like_MDH_nadp A la 98.0 2.7E-05 5.9E-10 61.5 7.6 64 3-67 1-81 (309)
239 PRK06719 precorrin-2 dehydroge 98.0 7.4E-05 1.6E-09 53.3 9.1 66 3-70 14-82 (157)
240 TIGR02354 thiF_fam2 thiamine b 98.0 7.6E-05 1.6E-09 55.3 9.0 32 3-34 22-54 (200)
241 PF13460 NAD_binding_10: NADH( 97.9 4.7E-05 1E-09 55.0 7.5 62 5-68 1-70 (183)
242 PF02882 THF_DHG_CYH_C: Tetrah 97.9 8.3E-05 1.8E-09 53.1 8.0 74 3-99 37-111 (160)
243 TIGR02717 AcCoA-syn-alpha acet 97.9 0.00011 2.3E-09 61.0 9.9 108 3-120 8-127 (447)
244 PRK08374 homoserine dehydrogen 97.9 3.6E-05 7.9E-10 61.5 6.8 112 1-119 1-146 (336)
245 PRK12548 shikimate 5-dehydroge 97.9 7.6E-05 1.6E-09 58.4 8.3 114 3-121 127-259 (289)
246 PRK14192 bifunctional 5,10-met 97.9 8.6E-05 1.9E-09 57.9 8.5 73 3-98 160-233 (283)
247 PF03720 UDPG_MGDP_dh_C: UDP-g 97.9 7.3E-05 1.6E-09 49.7 7.0 82 13-97 18-102 (106)
248 PRK14982 acyl-ACP reductase; P 97.9 6.4E-05 1.4E-09 59.9 7.8 107 3-121 156-266 (340)
249 PRK10792 bifunctional 5,10-met 97.9 7.7E-05 1.7E-09 58.0 8.1 73 3-98 160-233 (285)
250 PRK09496 trkA potassium transp 97.9 0.00031 6.8E-09 58.0 12.2 68 2-69 231-308 (453)
251 PRK15076 alpha-galactosidase; 97.9 3.4E-05 7.5E-10 63.5 6.2 67 2-68 1-85 (431)
252 PLN02968 Probable N-acetyl-gam 97.9 5.9E-05 1.3E-09 61.2 7.4 90 1-98 37-136 (381)
253 PLN02602 lactate dehydrogenase 97.9 0.00067 1.5E-08 54.5 13.2 64 3-67 38-114 (350)
254 cd05311 NAD_bind_2_malic_enz N 97.8 0.00014 3E-09 55.0 8.7 88 3-97 26-129 (226)
255 PRK14027 quinate/shikimate deh 97.8 9E-05 2E-09 57.8 7.9 113 3-121 128-252 (283)
256 PRK00683 murD UDP-N-acetylmura 97.8 5.1E-05 1.1E-09 62.3 6.6 66 3-68 4-69 (418)
257 PLN02477 glutamate dehydrogena 97.8 0.00016 3.5E-09 59.1 9.3 107 3-120 207-333 (410)
258 CHL00194 ycf39 Ycf39; Provisio 97.8 7.7E-05 1.7E-09 58.9 7.2 65 3-67 1-73 (317)
259 COG2910 Putative NADH-flavin r 97.8 4.4E-05 9.6E-10 55.3 5.2 65 3-67 1-71 (211)
260 PRK09414 glutamate dehydrogena 97.8 0.00017 3.6E-09 59.5 9.2 110 3-120 233-366 (445)
261 PRK03369 murD UDP-N-acetylmura 97.8 0.00039 8.4E-09 58.3 11.3 64 3-66 13-78 (488)
262 PRK12749 quinate/shikimate deh 97.8 0.00022 4.7E-09 55.8 9.0 117 3-124 125-259 (288)
263 PRK12550 shikimate 5-dehydroge 97.8 0.00031 6.7E-09 54.5 9.7 113 3-121 123-239 (272)
264 PRK00421 murC UDP-N-acetylmura 97.8 0.00044 9.6E-09 57.5 11.1 113 3-115 8-134 (461)
265 PRK14191 bifunctional 5,10-met 97.7 0.00014 3.1E-09 56.5 7.4 73 3-98 158-231 (285)
266 PRK01710 murD UDP-N-acetylmura 97.7 0.00057 1.2E-08 56.8 11.4 63 3-65 15-84 (458)
267 PRK14176 bifunctional 5,10-met 97.7 0.00018 3.9E-09 56.0 7.7 73 3-98 165-238 (287)
268 cd05313 NAD_bind_2_Glu_DH NAD( 97.7 0.0005 1.1E-08 52.7 9.8 110 3-121 39-177 (254)
269 TIGR03855 NAD_NadX aspartate d 97.7 0.00033 7.1E-09 53.0 8.8 84 28-118 5-93 (229)
270 PRK01390 murD UDP-N-acetylmura 97.7 0.00032 6.9E-09 58.3 9.5 63 3-65 10-72 (460)
271 cd05290 LDH_3 A subgroup of L- 97.7 0.00016 3.5E-09 57.0 7.1 64 4-67 1-77 (307)
272 PRK14030 glutamate dehydrogena 97.7 0.0006 1.3E-08 56.2 10.4 110 3-121 229-367 (445)
273 PRK02472 murD UDP-N-acetylmura 97.7 0.0011 2.4E-08 54.8 12.2 113 3-115 6-135 (447)
274 COG1063 Tdh Threonine dehydrog 97.7 0.0005 1.1E-08 55.2 9.9 88 4-98 171-271 (350)
275 PRK14106 murD UDP-N-acetylmura 97.7 0.00077 1.7E-08 55.7 11.1 65 3-67 6-77 (450)
276 PRK00141 murD UDP-N-acetylmura 97.7 0.00072 1.6E-08 56.5 10.9 63 3-65 16-81 (473)
277 PRK06392 homoserine dehydrogen 97.6 0.00026 5.7E-09 56.3 7.7 113 3-118 1-139 (326)
278 cd01487 E1_ThiF_like E1_ThiF_l 97.6 0.00039 8.4E-09 50.4 8.0 32 4-35 1-33 (174)
279 PF05368 NmrA: NmrA-like famil 97.6 0.00022 4.7E-09 53.7 7.0 64 5-68 1-74 (233)
280 PRK02006 murD UDP-N-acetylmura 97.6 0.0016 3.5E-08 54.7 12.6 63 3-65 8-76 (498)
281 PRK08664 aspartate-semialdehyd 97.6 0.00025 5.4E-09 57.0 7.4 90 1-97 2-108 (349)
282 PRK11863 N-acetyl-gamma-glutam 97.6 0.00021 4.5E-09 56.5 6.8 80 1-97 1-82 (313)
283 PRK14031 glutamate dehydrogena 97.6 0.0008 1.7E-08 55.5 10.3 110 3-120 229-365 (444)
284 TIGR01082 murC UDP-N-acetylmur 97.6 0.0011 2.4E-08 54.9 11.4 112 4-115 1-126 (448)
285 cd05212 NAD_bind_m-THF_DH_Cycl 97.6 0.00061 1.3E-08 47.6 8.3 39 51-98 64-102 (140)
286 PRK05086 malate dehydrogenase; 97.6 0.00036 7.8E-09 55.2 8.0 65 3-67 1-78 (312)
287 PRK08306 dipicolinate synthase 97.6 0.00062 1.3E-08 53.5 9.3 111 1-119 1-119 (296)
288 KOG3007 Mu-crystallin [Amino a 97.6 0.00086 1.9E-08 51.4 9.5 108 5-121 141-261 (333)
289 PRK05678 succinyl-CoA syntheta 97.6 0.00066 1.4E-08 53.1 9.1 110 3-120 9-122 (291)
290 PRK05442 malate dehydrogenase; 97.6 0.00073 1.6E-08 53.8 9.4 65 3-67 5-89 (326)
291 COG0026 PurK Phosphoribosylami 97.6 0.00012 2.7E-09 58.3 5.0 61 2-62 1-66 (375)
292 PRK14183 bifunctional 5,10-met 97.5 0.00043 9.4E-09 53.7 7.6 73 3-98 158-231 (281)
293 PRK14178 bifunctional 5,10-met 97.5 0.00038 8.2E-09 54.0 7.1 73 3-98 153-226 (279)
294 PRK07688 thiamine/molybdopteri 97.5 0.0012 2.7E-08 52.8 10.2 111 2-120 24-147 (339)
295 TIGR03366 HpnZ_proposed putati 97.5 0.0014 3.1E-08 50.7 10.3 88 3-97 122-219 (280)
296 PLN00112 malate dehydrogenase 97.5 0.00084 1.8E-08 55.4 9.3 65 3-67 101-185 (444)
297 COG2344 AT-rich DNA-binding pr 97.5 0.00022 4.7E-09 51.8 5.1 67 2-68 84-156 (211)
298 COG1090 Predicted nucleoside-d 97.5 0.0013 2.9E-08 50.6 9.7 58 9-66 6-64 (297)
299 PRK00676 hemA glutamyl-tRNA re 97.5 0.00036 7.7E-09 55.6 6.8 58 3-65 175-233 (338)
300 TIGR01759 MalateDH-SF1 malate 97.5 0.0015 3.3E-08 51.9 10.3 65 3-67 4-88 (323)
301 cd01338 MDH_choloroplast_like 97.5 0.00076 1.7E-08 53.6 8.6 65 3-67 3-87 (322)
302 cd08230 glucose_DH Glucose deh 97.5 0.0015 3.3E-08 52.2 10.5 88 3-97 174-270 (355)
303 PRK05472 redox-sensing transcr 97.5 8.8E-05 1.9E-09 55.5 3.1 67 3-70 85-158 (213)
304 KOG2666 UDP-glucose/GDP-mannos 97.5 0.0014 3E-08 51.5 9.7 116 2-117 1-150 (481)
305 COG0002 ArgC Acetylglutamate s 97.5 0.00046 9.9E-09 54.7 7.1 91 1-98 1-103 (349)
306 PF13241 NAD_binding_7: Putati 97.5 0.00054 1.2E-08 45.3 6.5 65 3-71 8-73 (103)
307 PRK02318 mannitol-1-phosphate 97.5 0.00054 1.2E-08 55.7 7.8 43 3-45 1-44 (381)
308 TIGR01087 murD UDP-N-acetylmur 97.5 0.0015 3.1E-08 53.9 10.3 114 4-117 1-131 (433)
309 PRK09880 L-idonate 5-dehydroge 97.5 0.0018 3.8E-08 51.7 10.5 87 3-96 171-266 (343)
310 PRK01438 murD UDP-N-acetylmura 97.5 0.0018 3.8E-08 54.1 10.9 64 3-66 17-86 (480)
311 COG0039 Mdh Malate/lactate deh 97.5 0.00083 1.8E-08 52.9 8.2 64 3-66 1-77 (313)
312 TIGR01757 Malate-DH_plant mala 97.5 0.0064 1.4E-07 49.5 13.5 65 3-67 45-129 (387)
313 TIGR02356 adenyl_thiF thiazole 97.5 0.0013 2.9E-08 48.7 8.9 111 3-121 22-143 (202)
314 TIGR01546 GAPDH-II_archae glyc 97.4 0.00092 2E-08 53.2 8.4 66 5-70 1-87 (333)
315 COG1648 CysG Siroheme synthase 97.4 0.0034 7.5E-08 46.8 11.0 110 3-112 13-145 (210)
316 cd00704 MDH Malate dehydrogena 97.4 0.00051 1.1E-08 54.6 6.9 64 4-67 2-85 (323)
317 TIGR01771 L-LDH-NAD L-lactate 97.4 0.0024 5.1E-08 50.3 10.5 61 7-67 1-73 (299)
318 PLN00106 malate dehydrogenase 97.4 0.0017 3.6E-08 51.7 9.7 65 3-67 19-95 (323)
319 PRK03803 murD UDP-N-acetylmura 97.4 0.0024 5.3E-08 52.9 11.0 114 4-117 8-137 (448)
320 COG0771 MurD UDP-N-acetylmuram 97.4 0.0015 3.3E-08 54.0 9.6 117 2-118 7-140 (448)
321 cd01337 MDH_glyoxysomal_mitoch 97.4 0.00091 2E-08 52.9 8.0 63 3-67 1-77 (310)
322 PTZ00079 NADP-specific glutama 97.4 0.0017 3.8E-08 53.6 9.9 111 3-120 238-375 (454)
323 PF00208 ELFV_dehydrog: Glutam 97.4 0.00086 1.9E-08 51.2 7.6 112 3-121 33-170 (244)
324 cd01336 MDH_cytoplasmic_cytoso 97.4 0.00071 1.5E-08 53.9 7.4 64 3-66 3-86 (325)
325 PF02629 CoA_binding: CoA bind 97.4 0.00025 5.4E-09 46.3 4.1 72 3-76 4-79 (96)
326 COG0334 GdhA Glutamate dehydro 97.4 0.0021 4.6E-08 52.2 10.0 108 3-120 208-334 (411)
327 TIGR01772 MDH_euk_gproteo mala 97.4 0.00072 1.6E-08 53.5 7.3 64 4-67 1-76 (312)
328 PRK02705 murD UDP-N-acetylmura 97.4 0.0029 6.4E-08 52.5 11.0 63 4-66 2-76 (459)
329 PRK05671 aspartate-semialdehyd 97.4 0.00046 1E-08 55.1 5.9 88 3-98 5-99 (336)
330 TIGR03649 ergot_EASG ergot alk 97.4 0.00074 1.6E-08 52.3 6.9 65 4-68 1-77 (285)
331 PRK14573 bifunctional D-alanyl 97.4 0.0021 4.5E-08 57.2 10.5 112 4-115 6-131 (809)
332 TIGR01019 sucCoAalpha succinyl 97.3 0.003 6.5E-08 49.4 10.0 110 3-120 7-120 (286)
333 COG0499 SAM1 S-adenosylhomocys 97.3 0.0011 2.5E-08 52.7 7.6 89 3-98 210-298 (420)
334 PTZ00325 malate dehydrogenase; 97.3 0.00044 9.5E-09 54.9 5.3 66 2-67 8-85 (321)
335 PRK05562 precorrin-2 dehydroge 97.3 0.0044 9.6E-08 46.6 10.4 110 3-112 26-158 (223)
336 TIGR01723 hmd_TIGR 5,10-methen 97.3 0.0035 7.7E-08 48.4 9.8 101 45-148 126-238 (340)
337 PRK00961 H(2)-dependent methyl 97.3 0.0033 7.1E-08 48.5 9.6 101 45-148 128-240 (342)
338 PLN02383 aspartate semialdehyd 97.3 0.0008 1.7E-08 54.0 6.6 89 2-97 7-101 (344)
339 PF00899 ThiF: ThiF family; I 97.3 0.00099 2.1E-08 46.1 6.2 112 3-122 3-125 (135)
340 TIGR01296 asd_B aspartate-semi 97.3 0.00043 9.2E-09 55.4 4.8 87 4-97 1-93 (339)
341 TIGR01758 MDH_euk_cyt malate d 97.3 0.001 2.2E-08 53.0 6.6 64 4-67 1-84 (324)
342 TIGR02355 moeB molybdopterin s 97.2 0.003 6.5E-08 48.2 9.0 111 3-121 25-146 (240)
343 cd01485 E1-1_like Ubiquitin ac 97.2 0.004 8.6E-08 46.1 9.4 113 3-121 20-145 (198)
344 PRK12475 thiamine/molybdopteri 97.2 0.0026 5.6E-08 51.0 8.9 110 3-120 25-147 (338)
345 PRK14874 aspartate-semialdehyd 97.2 0.00089 1.9E-08 53.5 6.3 89 2-97 1-95 (334)
346 PLN02520 bifunctional 3-dehydr 97.2 0.0018 3.9E-08 54.9 8.3 113 3-121 380-498 (529)
347 PRK08017 oxidoreductase; Provi 97.2 0.0013 2.8E-08 49.9 6.8 46 1-46 1-47 (256)
348 PRK04663 murD UDP-N-acetylmura 97.2 0.005 1.1E-07 50.9 10.7 113 3-116 8-136 (438)
349 PRK08644 thiamine biosynthesis 97.2 0.0025 5.4E-08 47.7 8.1 32 3-34 29-61 (212)
350 COG0460 ThrA Homoserine dehydr 97.2 0.0021 4.6E-08 51.0 7.7 113 1-117 2-135 (333)
351 PLN02353 probable UDP-glucose 97.2 0.006 1.3E-07 51.0 10.7 108 3-119 325-464 (473)
352 TIGR00978 asd_EA aspartate-sem 97.2 0.0014 3E-08 52.5 6.7 88 3-97 1-105 (341)
353 COG0773 MurC UDP-N-acetylmuram 97.2 0.0062 1.3E-07 50.3 10.4 112 4-115 9-134 (459)
354 cd01079 NAD_bind_m-THF_DH NAD 97.2 0.0023 5E-08 47.0 7.1 85 3-98 63-158 (197)
355 KOG0022 Alcohol dehydrogenase, 97.1 0.0063 1.4E-07 47.9 9.8 74 3-76 194-280 (375)
356 PRK08328 hypothetical protein; 97.1 0.0069 1.5E-07 45.9 9.9 111 3-121 28-150 (231)
357 PLN02516 methylenetetrahydrofo 97.1 0.0032 6.8E-08 49.4 8.0 73 3-98 168-241 (299)
358 PRK03815 murD UDP-N-acetylmura 97.1 0.0036 7.9E-08 51.3 8.7 106 3-114 1-115 (401)
359 cd00757 ThiF_MoeB_HesA_family 97.1 0.0042 9.2E-08 46.9 8.4 33 3-35 22-55 (228)
360 PRK11908 NAD-dependent epimera 97.1 0.0018 3.8E-08 51.7 6.5 64 2-65 1-75 (347)
361 PLN00016 RNA-binding protein; 97.1 0.0098 2.1E-07 48.1 10.8 37 1-37 51-92 (378)
362 PRK04308 murD UDP-N-acetylmura 97.0 0.012 2.5E-07 48.8 11.3 114 3-116 6-138 (445)
363 PRK14170 bifunctional 5,10-met 97.0 0.004 8.8E-08 48.5 7.9 74 3-99 158-232 (284)
364 PRK08223 hypothetical protein; 97.0 0.0057 1.2E-07 47.8 8.7 111 3-120 28-150 (287)
365 PLN00141 Tic62-NAD(P)-related 97.0 0.0031 6.7E-08 48.0 7.1 66 2-67 17-94 (251)
366 TIGR02822 adh_fam_2 zinc-bindi 97.0 0.0081 1.7E-07 47.7 9.7 87 3-96 167-254 (329)
367 cd08239 THR_DH_like L-threonin 97.0 0.0095 2E-07 47.2 10.1 87 3-96 165-262 (339)
368 TIGR01202 bchC 2-desacetyl-2-h 97.0 0.0064 1.4E-07 47.8 9.0 85 3-96 146-231 (308)
369 PRK14173 bifunctional 5,10-met 97.0 0.0045 9.7E-08 48.3 7.9 73 3-98 156-229 (287)
370 PRK14169 bifunctional 5,10-met 97.0 0.004 8.8E-08 48.4 7.6 73 3-98 157-230 (282)
371 PRK06813 homoserine dehydrogen 97.0 0.0061 1.3E-07 48.9 8.9 116 1-118 1-145 (346)
372 PRK14172 bifunctional 5,10-met 97.0 0.0047 1E-07 48.0 7.9 73 3-98 159-232 (278)
373 PRK12769 putative oxidoreducta 97.0 0.0037 8.1E-08 54.3 8.1 65 3-67 328-421 (654)
374 PRK14180 bifunctional 5,10-met 97.0 0.0042 9.2E-08 48.3 7.6 73 3-98 159-232 (282)
375 COG0190 FolD 5,10-methylene-te 97.0 0.0039 8.5E-08 48.2 7.3 74 3-99 157-231 (283)
376 TIGR03466 HpnA hopanoid-associ 97.0 0.0012 2.7E-08 51.7 4.7 65 3-67 1-73 (328)
377 PRK14186 bifunctional 5,10-met 97.0 0.0047 1E-07 48.4 7.8 74 3-99 159-233 (297)
378 PRK14177 bifunctional 5,10-met 97.0 0.0049 1.1E-07 48.0 7.8 73 3-98 160-233 (284)
379 PF02056 Glyco_hydro_4: Family 96.9 0.0023 4.9E-08 46.7 5.5 64 4-67 1-82 (183)
380 PRK14190 bifunctional 5,10-met 96.9 0.0051 1.1E-07 48.0 7.7 73 3-98 159-232 (284)
381 PRK14166 bifunctional 5,10-met 96.9 0.0055 1.2E-07 47.7 7.9 73 3-98 158-231 (282)
382 PRK05690 molybdopterin biosynt 96.9 0.0089 1.9E-07 45.7 9.0 110 3-120 33-153 (245)
383 cd08237 ribitol-5-phosphate_DH 96.9 0.01 2.2E-07 47.3 9.7 85 3-96 165-256 (341)
384 PRK14193 bifunctional 5,10-met 96.9 0.0058 1.2E-07 47.6 7.9 73 3-98 159-234 (284)
385 PRK08040 putative semialdehyde 96.9 0.0017 3.7E-08 51.9 5.0 87 3-97 5-98 (336)
386 cd08281 liver_ADH_like1 Zinc-d 96.9 0.011 2.4E-07 47.6 9.8 87 3-96 193-290 (371)
387 cd01492 Aos1_SUMO Ubiquitin ac 96.9 0.021 4.5E-07 42.2 10.4 110 3-121 22-142 (197)
388 PRK00517 prmA ribosomal protei 96.9 0.022 4.7E-07 43.6 10.9 109 3-118 121-234 (250)
389 PRK06019 phosphoribosylaminoim 96.9 0.0021 4.7E-08 52.0 5.6 62 2-63 2-68 (372)
390 PLN02427 UDP-apiose/xylose syn 96.9 0.0027 5.9E-08 51.4 6.3 64 3-66 15-94 (386)
391 PLN02897 tetrahydrofolate dehy 96.9 0.0051 1.1E-07 49.0 7.5 73 3-98 215-288 (345)
392 PRK12809 putative oxidoreducta 96.9 0.0044 9.6E-08 53.7 7.8 65 3-67 311-404 (639)
393 PRK08955 glyceraldehyde-3-phos 96.9 0.0083 1.8E-07 47.9 8.7 32 1-32 1-33 (334)
394 PRK14187 bifunctional 5,10-met 96.9 0.0065 1.4E-07 47.6 7.8 73 3-98 161-234 (294)
395 COG5495 Uncharacterized conser 96.9 0.018 4E-07 43.4 9.8 146 3-157 11-176 (289)
396 TIGR03201 dearomat_had 6-hydro 96.9 0.014 2.9E-07 46.7 9.8 45 3-47 168-212 (349)
397 PRK05993 short chain dehydroge 96.8 0.0047 1E-07 47.7 6.9 45 2-46 4-49 (277)
398 PRK14171 bifunctional 5,10-met 96.8 0.0065 1.4E-07 47.4 7.5 73 3-98 160-233 (288)
399 PRK07024 short chain dehydroge 96.8 0.013 2.8E-07 44.6 9.2 43 1-43 1-44 (257)
400 PRK03806 murD UDP-N-acetylmura 96.8 0.022 4.8E-07 47.0 11.2 113 3-116 7-133 (438)
401 TIGR01318 gltD_gamma_fam gluta 96.8 0.008 1.7E-07 50.2 8.6 66 3-68 142-236 (467)
402 PRK14182 bifunctional 5,10-met 96.8 0.0074 1.6E-07 47.0 7.7 73 3-98 158-231 (282)
403 PRK01368 murD UDP-N-acetylmura 96.8 0.019 4E-07 47.9 10.6 113 3-116 7-132 (454)
404 KOG1370 S-adenosylhomocysteine 96.8 0.009 2E-07 46.9 8.0 89 4-99 215-304 (434)
405 KOG1502 Flavonol reductase/cin 96.8 0.0047 1E-07 48.9 6.6 65 2-66 6-86 (327)
406 PF04016 DUF364: Domain of unk 96.8 0.0026 5.7E-08 44.8 4.8 104 3-120 12-115 (147)
407 PRK09291 short chain dehydroge 96.8 0.0057 1.2E-07 46.3 7.0 42 1-42 1-43 (257)
408 TIGR02853 spore_dpaA dipicolin 96.8 0.039 8.4E-07 43.2 11.7 108 3-118 2-117 (287)
409 cd05188 MDR Medium chain reduc 96.8 0.023 4.9E-07 42.9 10.3 88 3-97 136-233 (271)
410 PRK05653 fabG 3-ketoacyl-(acyl 96.8 0.015 3.2E-07 43.4 9.2 39 3-41 6-45 (246)
411 PRK06728 aspartate-semialdehyd 96.8 0.0031 6.7E-08 50.6 5.6 87 3-97 6-100 (347)
412 PRK05597 molybdopterin biosynt 96.8 0.0099 2.2E-07 47.9 8.5 111 3-121 29-150 (355)
413 PLN03209 translocon at the inn 96.8 0.0053 1.1E-07 52.3 7.1 64 4-67 82-168 (576)
414 PRK08762 molybdopterin biosynt 96.8 0.044 9.6E-07 44.5 12.2 111 3-121 136-257 (376)
415 PRK10537 voltage-gated potassi 96.8 0.027 5.9E-07 46.0 10.9 106 3-120 241-355 (393)
416 PRK06182 short chain dehydroge 96.7 0.023 4.9E-07 43.6 10.1 42 3-44 4-46 (273)
417 PF00070 Pyr_redox: Pyridine n 96.7 0.0038 8.2E-08 39.0 4.7 33 4-36 1-33 (80)
418 PRK07326 short chain dehydroge 96.7 0.018 3.9E-07 43.0 9.2 40 3-42 7-47 (237)
419 PLN02214 cinnamoyl-CoA reducta 96.7 0.0054 1.2E-07 49.0 6.6 66 2-67 10-90 (342)
420 PRK10637 cysG siroheme synthas 96.7 0.02 4.3E-07 47.8 10.1 110 3-112 13-145 (457)
421 PLN02662 cinnamyl-alcohol dehy 96.7 0.0061 1.3E-07 47.9 6.8 65 3-67 5-85 (322)
422 TIGR02818 adh_III_F_hyde S-(hy 96.7 0.02 4.2E-07 46.2 9.8 74 3-76 187-273 (368)
423 PRK07074 short chain dehydroge 96.7 0.021 4.6E-07 43.3 9.5 43 1-43 1-44 (257)
424 PLN02740 Alcohol dehydrogenase 96.7 0.019 4.2E-07 46.5 9.7 74 3-76 200-286 (381)
425 KOG0023 Alcohol dehydrogenase, 96.7 0.0078 1.7E-07 47.5 6.9 45 3-47 183-228 (360)
426 PRK08163 salicylate hydroxylas 96.7 0.0026 5.6E-08 51.6 4.6 34 3-36 5-38 (396)
427 cd08245 CAD Cinnamyl alcohol d 96.7 0.022 4.7E-07 44.8 9.6 87 3-96 164-256 (330)
428 TIGR02964 xanthine_xdhC xanthi 96.7 0.025 5.5E-07 43.3 9.6 34 3-36 101-134 (246)
429 TIGR03451 mycoS_dep_FDH mycoth 96.7 0.023 4.9E-07 45.5 9.8 88 3-97 178-277 (358)
430 PRK06482 short chain dehydroge 96.7 0.026 5.7E-07 43.3 9.8 43 1-43 1-44 (276)
431 cd05197 GH4_glycoside_hydrolas 96.6 0.0084 1.8E-07 49.5 7.3 65 3-67 1-83 (425)
432 PRK07878 molybdopterin biosynt 96.6 0.014 3E-07 47.7 8.5 111 3-121 43-164 (392)
433 PRK12409 D-amino acid dehydrog 96.6 0.0032 7E-08 51.3 4.8 33 3-35 2-34 (410)
434 PRK07454 short chain dehydroge 96.6 0.024 5.2E-07 42.5 9.3 40 3-42 7-47 (241)
435 PRK06180 short chain dehydroge 96.6 0.026 5.6E-07 43.5 9.6 41 3-43 5-46 (277)
436 PRK08643 acetoin reductase; Va 96.6 0.021 4.7E-07 43.2 9.1 42 1-42 1-43 (256)
437 PRK14181 bifunctional 5,10-met 96.6 0.012 2.6E-07 46.0 7.6 73 3-98 154-231 (287)
438 PRK05865 hypothetical protein; 96.6 0.0074 1.6E-07 53.8 7.2 62 3-67 1-70 (854)
439 cd05283 CAD1 Cinnamyl alcohol 96.6 0.027 5.9E-07 44.6 9.8 87 3-96 171-263 (337)
440 PLN02616 tetrahydrofolate dehy 96.6 0.011 2.3E-07 47.5 7.3 73 3-98 232-305 (364)
441 COG1062 AdhC Zn-dependent alco 96.6 0.02 4.4E-07 45.5 8.7 74 3-76 187-272 (366)
442 PRK10538 malonic semialdehyde 96.6 0.029 6.2E-07 42.4 9.5 41 3-43 1-42 (248)
443 cd08242 MDR_like Medium chain 96.6 0.032 7E-07 43.6 10.1 85 3-94 157-243 (319)
444 TIGR01851 argC_other N-acetyl- 96.6 0.013 2.7E-07 46.3 7.5 77 3-97 2-81 (310)
445 PRK14168 bifunctional 5,10-met 96.6 0.014 3.1E-07 45.7 7.8 73 3-98 162-239 (297)
446 TIGR02360 pbenz_hydroxyl 4-hyd 96.5 0.0039 8.6E-08 50.7 4.8 36 1-36 1-36 (390)
447 KOG1399 Flavin-containing mono 96.5 0.0029 6.3E-08 52.5 4.0 36 1-36 5-40 (448)
448 PF00107 ADH_zinc_N: Zinc-bind 96.5 0.007 1.5E-07 41.1 5.3 78 13-97 2-90 (130)
449 PRK05868 hypothetical protein; 96.5 0.0038 8.3E-08 50.5 4.6 35 2-36 1-35 (372)
450 cd08300 alcohol_DH_class_III c 96.5 0.033 7.1E-07 44.9 10.0 74 3-76 188-274 (368)
451 PLN02178 cinnamyl-alcohol dehy 96.5 0.03 6.4E-07 45.4 9.7 87 3-96 180-273 (375)
452 PRK04690 murD UDP-N-acetylmura 96.5 0.011 2.3E-07 49.5 7.2 64 3-66 9-77 (468)
453 PLN02695 GDP-D-mannose-3',5'-e 96.5 0.0029 6.4E-08 51.1 3.8 64 3-66 22-93 (370)
454 TIGR01532 E4PD_g-proteo D-eryt 96.5 0.019 4.1E-07 45.7 8.3 29 4-32 1-33 (325)
455 PRK07774 short chain dehydroge 96.5 0.031 6.8E-07 42.0 9.3 39 3-41 7-46 (250)
456 PRK12814 putative NADPH-depend 96.5 0.012 2.5E-07 51.3 7.7 65 3-67 194-287 (652)
457 PRK12771 putative glutamate sy 96.5 0.011 2.3E-07 50.6 7.4 66 3-68 138-232 (564)
458 PLN02896 cinnamyl-alcohol dehy 96.5 0.011 2.3E-07 47.4 6.9 65 3-67 11-88 (353)
459 TIGR01081 mpl UDP-N-acetylmura 96.5 0.014 3E-07 48.4 7.8 111 4-114 1-128 (448)
460 PRK07236 hypothetical protein; 96.5 0.0045 9.8E-08 50.1 4.8 35 2-36 6-40 (386)
461 PRK14184 bifunctional 5,10-met 96.5 0.014 2.9E-07 45.6 7.1 73 3-98 158-235 (286)
462 COG2227 UbiG 2-polyprenyl-3-me 96.5 0.03 6.5E-07 42.5 8.7 85 3-95 61-160 (243)
463 PRK05693 short chain dehydroge 96.5 0.047 1E-06 41.9 10.2 42 3-44 2-44 (274)
464 PRK06753 hypothetical protein; 96.5 0.0042 9.1E-08 49.9 4.6 34 3-36 1-34 (373)
465 PF00185 OTCace: Aspartate/orn 96.5 0.06 1.3E-06 38.3 10.0 94 3-97 3-121 (158)
466 PRK11728 hydroxyglutarate oxid 96.5 0.0044 9.5E-08 50.4 4.7 35 1-35 1-37 (393)
467 cd08296 CAD_like Cinnamyl alco 96.5 0.041 9E-07 43.5 10.1 87 3-96 165-259 (333)
468 PRK06598 aspartate-semialdehyd 96.5 0.0076 1.7E-07 48.7 5.9 88 3-97 2-99 (369)
469 cd08301 alcohol_DH_plants Plan 96.5 0.043 9.4E-07 44.1 10.3 87 3-96 189-289 (369)
470 PRK12779 putative bifunctional 96.5 0.012 2.6E-07 53.3 7.7 65 3-67 307-401 (944)
471 PRK14185 bifunctional 5,10-met 96.5 0.018 3.9E-07 45.1 7.7 73 3-98 158-235 (293)
472 COG3804 Uncharacterized conser 96.5 0.014 3.1E-07 45.1 6.9 107 1-115 1-124 (350)
473 PRK10309 galactitol-1-phosphat 96.4 0.037 7.9E-07 44.0 9.7 87 3-96 162-260 (347)
474 PRK07890 short chain dehydroge 96.4 0.034 7.5E-07 42.0 9.2 40 3-42 6-46 (258)
475 cd08277 liver_alcohol_DH_like 96.4 0.046 1E-06 43.9 10.3 74 3-76 186-272 (365)
476 cd01491 Ube1_repeat1 Ubiquitin 96.4 0.031 6.8E-07 43.7 8.8 107 3-121 20-137 (286)
477 PLN02650 dihydroflavonol-4-red 96.4 0.013 2.8E-07 46.8 6.9 65 3-67 6-86 (351)
478 PRK12320 hypothetical protein; 96.4 0.021 4.5E-07 50.0 8.4 62 3-67 1-69 (699)
479 PRK12826 3-ketoacyl-(acyl-carr 96.4 0.032 7E-07 41.9 8.7 38 3-40 7-45 (251)
480 cd05298 GH4_GlvA_pagL_like Gly 96.4 0.017 3.6E-07 47.9 7.5 65 3-67 1-83 (437)
481 PRK06200 2,3-dihydroxy-2,3-dih 96.4 0.046 1E-06 41.6 9.6 41 3-43 7-48 (263)
482 PRK08243 4-hydroxybenzoate 3-m 96.4 0.0055 1.2E-07 49.8 4.7 36 1-36 1-36 (392)
483 PRK05866 short chain dehydroge 96.4 0.041 9E-07 42.9 9.5 41 3-43 41-82 (293)
484 PRK08219 short chain dehydroge 96.4 0.013 2.8E-07 43.4 6.4 64 2-66 3-79 (227)
485 COG0451 WcaG Nucleoside-diphos 96.4 0.0057 1.2E-07 47.6 4.6 63 4-66 2-72 (314)
486 PRK07411 hypothetical protein; 96.4 0.027 5.8E-07 46.1 8.6 33 3-35 39-72 (390)
487 PLN02686 cinnamoyl-CoA reducta 96.4 0.012 2.6E-07 47.5 6.6 40 2-41 53-93 (367)
488 PRK06139 short chain dehydroge 96.4 0.049 1.1E-06 43.4 9.9 39 4-42 9-48 (330)
489 PF01494 FAD_binding_3: FAD bi 96.4 0.0055 1.2E-07 48.3 4.4 34 3-36 2-35 (356)
490 PRK15181 Vi polysaccharide bio 96.3 0.0084 1.8E-07 47.9 5.5 33 3-35 16-49 (348)
491 PLN02586 probable cinnamyl alc 96.3 0.041 8.9E-07 44.2 9.5 87 3-96 185-278 (360)
492 PRK06475 salicylate hydroxylas 96.3 0.0056 1.2E-07 49.9 4.5 36 1-36 1-36 (400)
493 PRK05714 2-octaprenyl-3-methyl 96.3 0.0056 1.2E-07 49.9 4.5 35 1-35 1-35 (405)
494 PRK12939 short chain dehydroge 96.3 0.048 1E-06 40.9 9.2 39 3-41 8-47 (250)
495 cd08234 threonine_DH_like L-th 96.3 0.046 1E-06 43.0 9.5 87 3-96 161-257 (334)
496 cd08298 CAD2 Cinnamyl alcohol 96.3 0.048 1E-06 42.8 9.5 87 3-96 169-256 (329)
497 PRK14851 hypothetical protein; 96.3 0.027 5.8E-07 49.2 8.5 112 3-121 44-167 (679)
498 PRK06947 glucose-1-dehydrogena 96.3 0.057 1.2E-06 40.6 9.5 41 1-41 1-43 (248)
499 PRK07109 short chain dehydroge 96.3 0.055 1.2E-06 43.1 9.8 39 4-42 10-49 (334)
500 cd05296 GH4_P_beta_glucosidase 96.3 0.021 4.6E-07 47.1 7.5 65 3-67 1-84 (419)
No 1
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=4.8e-36 Score=229.95 Aligned_cols=167 Identities=21% Similarity=0.335 Sum_probs=155.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH-HHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL-VDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+||+|||+|.||.+||++|.++||+|++|||++++ .+.+.+.|.....++.++++++|+||+|+|++++++++++++++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 58999999999999999999999999999999999 66667779999999999999999999999999999999998889
Q ss_pred hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-cee
Q 044797 82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DKK 147 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~~ 147 (173)
+.+.+++|+++||+||++|...+++.+.++++|.+|++++ ++++||+++.+++++|+|+.+|. +.+
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~ 160 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVH 160 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEE
Confidence 9999999999999999999999999999999999999875 88999999999999999999997 789
Q ss_pred ecCCCchHhHhHHhHhhhHhhhh
Q 044797 148 VNISGQEIHWGYLKINYFIRVMT 170 (173)
Q Consensus 148 ~g~~Gsg~a~~~~~~~~~~~~~~ 170 (173)
+|+.|+|.+ .++++|.++-...
T Consensus 161 ~G~~G~G~~-~Kl~nn~l~~~~~ 182 (286)
T COG2084 161 VGPVGAGQA-AKLANNILLAGNI 182 (286)
T ss_pred ECCCCchHH-HHHHHHHHHHHHH
Confidence 999999987 6788988876544
No 2
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=100.00 E-value=4.7e-33 Score=200.04 Aligned_cols=148 Identities=22% Similarity=0.414 Sum_probs=129.1
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
|+||||||+|.||++|+++|.++|++|++|||++++.+++.+.|++.++++.++++++|+|++|+|++.++++++++++
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~- 79 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN- 79 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-
T ss_pred CCEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999997655
Q ss_pred hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCCcee-
Q 044797 82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFIDKK- 147 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~~~~- 147 (173)
+.+.+++|++|+|+||.+|.+.+++.+.++++|++|++.+ +++++|+++.+++++|+|+.+|..++
T Consensus 80 i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v~~ 159 (163)
T PF03446_consen 80 ILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNVYH 159 (163)
T ss_dssp HGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEEEE
T ss_pred HhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCcee
Confidence 8899999999999999999999999999999999999875 78899999999999999999997443
Q ss_pred -ecC
Q 044797 148 -VNI 150 (173)
Q Consensus 148 -~g~ 150 (173)
+|+
T Consensus 160 ~~G~ 163 (163)
T PF03446_consen 160 YVGP 163 (163)
T ss_dssp E-ES
T ss_pred eeCc
Confidence 464
No 3
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=2.1e-32 Score=207.37 Aligned_cols=166 Identities=20% Similarity=0.326 Sum_probs=155.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
++|||||+|.||.+|+.+|+++||+|++|||+.++.+.+.+.|.++.+++.|+++.+|+||.++|++.+++++++++.++
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gv 115 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGV 115 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred hhcCCCCCEE-EEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhC-Ccee
Q 044797 83 LKGLQKGAVI-ILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFF-IDKK 147 (173)
Q Consensus 83 ~~~l~~g~~i-i~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g-~~~~ 147 (173)
.+.+++++.. ||.||++|.+..++.+.++..+.+|++++ +++.+|+++.++.+.++++.+| .+.|
T Consensus 116 l~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~~~ 195 (327)
T KOG0409|consen 116 LSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVVF 195 (327)
T ss_pred eeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceEEE
Confidence 9999999888 89999999999999999999999999875 8889999999999999999999 5789
Q ss_pred ecCCCchHhHhHHhHhhhHhhh
Q 044797 148 VNISGQEIHWGYLKINYFIRVM 169 (173)
Q Consensus 148 ~g~~Gsg~a~~~~~~~~~~~~~ 169 (173)
+|..|+|.+ .++++|.++...
T Consensus 196 ~G~~GnG~~-~Kl~nnm~~g~~ 216 (327)
T KOG0409|consen 196 LGGVGNGQA-AKLCNNMLLGSS 216 (327)
T ss_pred ecccCchHH-HHHHHHHHHHHH
Confidence 999999987 568777766543
No 4
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.97 E-value=2.3e-30 Score=212.53 Aligned_cols=166 Identities=12% Similarity=0.170 Sum_probs=148.4
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc----CCc---eecChhhhhcC---CCEEEEeccChhh
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML----GGI---RSASPMDAGKD---VSALVVVISHVDQ 71 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~---~~~~~~~~~~~---~dvii~~v~~~~~ 71 (173)
+++|||||+|.||.+||++|+++|++|++|||++++.+.+.+. |.. .+.+++++++. +|+||+|+|++.+
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~a 85 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAP 85 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHH
Confidence 3689999999999999999999999999999999999988763 543 57788998876 9999999999999
Q ss_pred hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHH
Q 044797 72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVK 139 (173)
Q Consensus 72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~ 139 (173)
+++++ +++.+.+.+|+++||+||++|.+++++.+.++++|++|++.+ ++++||++++++.++|+|
T Consensus 86 V~~Vi---~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~~im~GG~~~a~~~v~pvL 162 (493)
T PLN02350 86 VDQTI---KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGPSLMPGGSFEAYKNIEDIL 162 (493)
T ss_pred HHHHH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCCeEEecCCHHHHHHHHHHH
Confidence 99998 578899999999999999999999999999999999999864 789999999999999999
Q ss_pred HhhCC-------ceeecCCCchHhHhHHhHhhhHhhhhc
Q 044797 140 NEFFI-------DKKVNISGQEIHWGYLKINYFIRVMTD 171 (173)
Q Consensus 140 ~~~g~-------~~~~g~~Gsg~a~~~~~~~~~~~~~~~ 171 (173)
+.++. +.|+|+.|+| +|++++.|.+.-+++.
T Consensus 163 ~~ia~k~~~~~~v~~vG~~GaG-~~vKlv~N~i~~~~m~ 200 (493)
T PLN02350 163 EKVAAQVDDGPCVTYIGPGGAG-NFVKMVHNGIEYGDMQ 200 (493)
T ss_pred HHHhhhcCCCCcEEEeCCcCHH-HHHHHHHHHHHHHHHH
Confidence 99983 6899999998 5578989887766543
No 5
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.97 E-value=7.7e-30 Score=199.32 Aligned_cols=166 Identities=22% Similarity=0.327 Sum_probs=149.7
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
+||+|||+|+||.+|+++|.++|++|++|||++++.+.+.+.|+..+.++.++++++|+||+|+|++.+++.++.+.+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 58999999999999999999999999999999999999988888888889999999999999999887889998765677
Q ss_pred hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-ceee
Q 044797 83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DKKV 148 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~~~ 148 (173)
.+.++++++++|+||++|.+.+++.+.+.++|+.|++.+ ++++||+++.++.++|+|+.+|. +.|+
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~~~ 161 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINA 161 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeEee
Confidence 788899999999999999999999999999999998864 57889999999999999999995 6789
Q ss_pred cCCCchHhHhHHhHhhhHhhh
Q 044797 149 NISGQEIHWGYLKINYFIRVM 169 (173)
Q Consensus 149 g~~Gsg~a~~~~~~~~~~~~~ 169 (173)
|..|+|.++ ++++|++..++
T Consensus 162 g~~G~g~~~-Kl~~N~~~~~~ 181 (296)
T PRK15461 162 GGPGMGIRV-KLINNYMSIAL 181 (296)
T ss_pred CCCCHHHHH-HHHHHHHHHHH
Confidence 999999885 57788776544
No 6
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.97 E-value=9.9e-30 Score=198.16 Aligned_cols=165 Identities=18% Similarity=0.282 Sum_probs=147.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
|||+|||+|+||.+|+++|.++|++|++|||++. .+++.+.|+..+.++.++++++|+||+|+|++.++++++++++++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~ 79 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC 79 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence 3899999999999999999999999999999975 566777788888899999999999999999988999998766667
Q ss_pred hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-ceee
Q 044797 83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DKKV 148 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~~~ 148 (173)
.+.+++|++++|+||.+|.+.+++.+.+.++|+.|++++ .++++|+++.+++++|+|+.+|. ..|+
T Consensus 80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~ 159 (292)
T PRK15059 80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLV 159 (292)
T ss_pred hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEe
Confidence 778899999999999999999999999999999999864 67889999999999999999995 6899
Q ss_pred cCCCchHhHhHHhHhhhHhhh
Q 044797 149 NISGQEIHWGYLKINYFIRVM 169 (173)
Q Consensus 149 g~~Gsg~a~~~~~~~~~~~~~ 169 (173)
|..|+|..+ ++++|+++.+.
T Consensus 160 G~~G~g~~~-Kl~~N~l~~~~ 179 (292)
T PRK15059 160 GGNGDGQTC-KVANQIIVALN 179 (292)
T ss_pred CCccHHHHH-HHHHHHHHHHH
Confidence 999999885 68888887543
No 7
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.97 E-value=1.2e-28 Score=192.92 Aligned_cols=164 Identities=14% Similarity=0.123 Sum_probs=146.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcC---CCEEEEeccChhhhhhhhcCc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKD---VSALVVVISHVDQIDDIFFGH 79 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~---~dvii~~v~~~~~~~~v~~~~ 79 (173)
|+|||||+|+||.+|+++|.++|++|++|||++++.+.+.+.|...+.++++++++ +|+|++|+|++.++++++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~--- 77 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI--- 77 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH---
Confidence 48999999999999999999999999999999999999888888888889988765 699999999877888888
Q ss_pred cchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHhhCC---
Q 044797 80 EGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNEFFI--- 144 (173)
Q Consensus 80 ~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~g~--- 144 (173)
+++.+.+++|++++|+||++|.+.+++.+.+.++|++|++++ +++++|++++++.++|+|+.+|.
T Consensus 78 ~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~~~~~ 157 (299)
T PRK12490 78 KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGYCLMVGGDKEIYDRLEPVFKALAPEGP 157 (299)
T ss_pred HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCCeEEecCCHHHHHHHHHHHHHhcCcCC
Confidence 467788899999999999999999999999999999999853 67899999999999999999995
Q ss_pred -ceeecCCCchHhHhHHhHhhhHhhhh
Q 044797 145 -DKKVNISGQEIHWGYLKINYFIRVMT 170 (173)
Q Consensus 145 -~~~~g~~Gsg~a~~~~~~~~~~~~~~ 170 (173)
..|+|..|+|.. .++++|+++-++.
T Consensus 158 ~~~~~G~~g~a~~-~Kl~~n~~~~~~~ 183 (299)
T PRK12490 158 GYVHAGPVGSGHF-LKMVHNGIEYGMM 183 (299)
T ss_pred cEEEECCcCHHHH-HHHHHHHHHHHHH
Confidence 689999999966 5788888776544
No 8
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.96 E-value=2.9e-28 Score=199.81 Aligned_cols=166 Identities=13% Similarity=0.154 Sum_probs=147.0
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc----C--CceecChhhhhc---CCCEEEEeccChhhh
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML----G--GIRSASPMDAGK---DVSALVVVISHVDQI 72 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g--~~~~~~~~~~~~---~~dvii~~v~~~~~~ 72 (173)
|.+|||||+|.||.+||++|+++|++|++|||++++.+.+.+. | +..+++++++++ ++|+|++++|+++.+
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v 80 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAV 80 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHH
Confidence 3589999999999999999999999999999999999888764 4 346778888886 489999999988999
Q ss_pred hhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHH
Q 044797 73 DDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKN 140 (173)
Q Consensus 73 ~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~ 140 (173)
++++ +++.+.+.+|++|||++++.+.++.++.+.+.++|++|++.+ ++++||++++++.++|+|+
T Consensus 81 ~~vi---~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~~lm~GG~~~a~~~~~piL~ 157 (470)
T PTZ00142 81 DETI---DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGPSLMPGGNKEAYDHVKDILE 157 (470)
T ss_pred HHHH---HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHH
Confidence 9998 578899999999999999999999999999999999999864 8899999999999999999
Q ss_pred hhCC-------ceeecCCCchHhHhHHhHhhhHhhhhc
Q 044797 141 EFFI-------DKKVNISGQEIHWGYLKINYFIRVMTD 171 (173)
Q Consensus 141 ~~g~-------~~~~g~~Gsg~a~~~~~~~~~~~~~~~ 171 (173)
.++. ..|+|+.|+| +|++++.|.+.-++++
T Consensus 158 ~ia~~~~~~~~~~~~G~~GaG-h~vKmvhN~ie~~~m~ 194 (470)
T PTZ00142 158 KCSAKVGDSPCVTYVGPGSSG-HYVKMVHNGIEYGDMQ 194 (470)
T ss_pred HHhhhcCCCCeEEEECCCCHH-HHHHHHhHHHHHHHHH
Confidence 9985 3799999999 6688988887666553
No 9
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.96 E-value=6.5e-28 Score=188.91 Aligned_cols=163 Identities=13% Similarity=0.115 Sum_probs=145.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcC---CCEEEEeccChhhhhhhhcCc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKD---VSALVVVISHVDQIDDIFFGH 79 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~---~dvii~~v~~~~~~~~v~~~~ 79 (173)
|||||||+|.||.+|+++|+++|++|++|||++++.+.+.+.|+...++++++++. +|+|++++|++.++++++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~--- 77 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI--- 77 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH---
Confidence 48999999999999999999999999999999999999988898888889888775 699999999876788887
Q ss_pred cchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHhhCC---
Q 044797 80 EGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNEFFI--- 144 (173)
Q Consensus 80 ~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~g~--- 144 (173)
+++.+.++++++++|+||++|.+.+++.+.++++|++|++.+ +++++|++++++.++|+++.++.
T Consensus 78 ~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~~~~~gG~~~~~~~~~~~l~~~~~~~~ 157 (301)
T PRK09599 78 DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGYCLMIGGDKEAVERLEPIFKALAPRAE 157 (301)
T ss_pred HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCCeEEecCCHHHHHHHHHHHHHHccccc
Confidence 467788899999999999999999999999999999999864 67789999999999999999997
Q ss_pred --ceeecCCCchHhHhHHhHhhhHhhh
Q 044797 145 --DKKVNISGQEIHWGYLKINYFIRVM 169 (173)
Q Consensus 145 --~~~~g~~Gsg~a~~~~~~~~~~~~~ 169 (173)
+.|+|+.|+|.. .++++|.+.-++
T Consensus 158 ~~~~~~G~~G~g~~-~Kl~~n~l~~~~ 183 (301)
T PRK09599 158 DGYLHAGPVGAGHF-VKMVHNGIEYGM 183 (301)
T ss_pred CCeEeECCCcHHHH-HHHHHHHHHHHH
Confidence 579999999966 568888766554
No 10
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.96 E-value=7.6e-28 Score=187.46 Aligned_cols=161 Identities=21% Similarity=0.325 Sum_probs=146.1
Q ss_pred EEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccchhhcC
Q 044797 7 FVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGL 86 (173)
Q Consensus 7 iiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l 86 (173)
|||+|.||.+|+++|.++|++|++|||++++.+.+.+.|+..++++.++++++|+||+|+|++.+++.++++++++.+.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999999999999988888888999999999999999998788899987666788889
Q ss_pred CCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-ceeecCCC
Q 044797 87 QKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DKKVNISG 152 (173)
Q Consensus 87 ~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~~~g~~G 152 (173)
+++++++++||++|.+.+++.+.+.++|++|++.+ .++++|+++.+++++++|+.+|. +.|+|..|
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g 160 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHG 160 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCC
Confidence 99999999999999999999999999999999864 66789999999999999999995 78999999
Q ss_pred chHhHhHHhHhhhHhh
Q 044797 153 QEIHWGYLKINYFIRV 168 (173)
Q Consensus 153 sg~a~~~~~~~~~~~~ 168 (173)
+|.+ .++++|+++-.
T Consensus 161 ~g~~-~Kl~~n~~~~~ 175 (288)
T TIGR01692 161 AGQA-AKICNNMLLGI 175 (288)
T ss_pred HHHH-HHHHHHHHHHH
Confidence 9988 56888886554
No 11
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.96 E-value=1.7e-27 Score=186.06 Aligned_cols=167 Identities=15% Similarity=0.298 Sum_probs=147.4
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE 80 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~ 80 (173)
|+++|+|||+|.||.+++++|.+.|++|.+|||++++.+.+.+.|+..+++++++++++|+||+|+|++.+++.+++..+
T Consensus 1 ~~~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~ 80 (296)
T PRK11559 1 MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGEN 80 (296)
T ss_pred CCceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcc
Confidence 88999999999999999999999999999999999999988888888888899999999999999998888888876555
Q ss_pred chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-ce
Q 044797 81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DK 146 (173)
Q Consensus 81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~ 146 (173)
++.+.++++++|+|+|+..|.+.+++.+.+.++|++|++.+ .++++|+++.++.++++++.+|. ..
T Consensus 81 ~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~ 160 (296)
T PRK11559 81 GIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVV 160 (296)
T ss_pred hHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeE
Confidence 67788899999999999999999999999988899998754 56788999999999999999985 67
Q ss_pred eecCCCchHhHhHHhHhhhHhh
Q 044797 147 KVNISGQEIHWGYLKINYFIRV 168 (173)
Q Consensus 147 ~~g~~Gsg~a~~~~~~~~~~~~ 168 (173)
++|..|+|.+ .++++|.++-.
T Consensus 161 ~~g~~g~a~~-~Kl~~n~~~~~ 181 (296)
T PRK11559 161 HTGDIGAGNV-TKLANQVIVAL 181 (296)
T ss_pred EeCCcCHHHH-HHHHHHHHHHH
Confidence 8999999876 45677765543
No 12
>PLN02858 fructose-bisphosphate aldolase
Probab=99.96 E-value=4.8e-28 Score=218.17 Aligned_cols=166 Identities=46% Similarity=0.668 Sum_probs=152.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
++|||||+|.||.+||++|+++|++|++|||++++.+++.+.|+..++++.+++++||+||+|+|++.++++++++++++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~ 84 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGA 84 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999877788
Q ss_pred hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCC--ceeeece-------------eeeeecCHhhHHHHHHHHHhhCCce-
Q 044797 83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNL--TFYILER-------------MFLISSSIDCFTYLFLVKNEFFIDK- 146 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g--~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~~~- 146 (173)
.+.+++|++++|+||++|.+.+++.+.+.++| +.|++++ ++++||+++.+++++|+|+.+|...
T Consensus 85 ~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~ 164 (1378)
T PLN02858 85 AKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLY 164 (1378)
T ss_pred HhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceE
Confidence 88999999999999999999999999999999 8999865 7789999999999999999999744
Q ss_pred e-ecCCCchHhHhHHhHhhhHhhh
Q 044797 147 K-VNISGQEIHWGYLKINYFIRVM 169 (173)
Q Consensus 147 ~-~g~~Gsg~a~~~~~~~~~~~~~ 169 (173)
+ +|+.|+|.+ .++++|++.-+.
T Consensus 165 ~~~G~~G~g~~-~KL~nN~l~~~~ 187 (1378)
T PLN02858 165 TFEGEIGAGSK-VKMVNELLEGIH 187 (1378)
T ss_pred EecCCCCHhHH-HHHHHHHHHHHH
Confidence 4 499999988 568899877543
No 13
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.95 E-value=2.5e-27 Score=194.30 Aligned_cols=164 Identities=13% Similarity=0.202 Sum_probs=143.9
Q ss_pred eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc---C--CceecChhhhh---cCCCEEEEeccChhhhhhh
Q 044797 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML---G--GIRSASPMDAG---KDVSALVVVISHVDQIDDI 75 (173)
Q Consensus 4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~---g--~~~~~~~~~~~---~~~dvii~~v~~~~~~~~v 75 (173)
+|||||+|.||.+||++|+++|++|++|||++++.+.+.+. | +....++++++ +.+|+|++++|++..++++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 58999999999999999999999999999999999988765 2 45667777766 4689999999988889999
Q ss_pred hcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHhhC
Q 044797 76 FFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNEFF 143 (173)
Q Consensus 76 ~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~g 143 (173)
+ +++.+++++|++|||.+++.+.++.+..+.+.++|++|++.+ ++++||++++++.++|+|+.++
T Consensus 81 i---~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~~im~GG~~~a~~~~~p~L~~ia 157 (467)
T TIGR00873 81 I---NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGPSIMPGGSAEAWPLVAPIFQKIA 157 (467)
T ss_pred H---HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCCcCCCCCCHHHHHHHHHHHHHHh
Confidence 8 578889999999999999999998888899999999999864 7789999999999999999998
Q ss_pred Cc-------eeecCCCchHhHhHHhHhhhHhhhhc
Q 044797 144 ID-------KKVNISGQEIHWGYLKINYFIRVMTD 171 (173)
Q Consensus 144 ~~-------~~~g~~Gsg~a~~~~~~~~~~~~~~~ 171 (173)
.. .|+|+.|+| +|++++.|.+.-++++
T Consensus 158 ~~~~~~~~~~~~G~~GsG-~~vKmvhN~i~~~~m~ 191 (467)
T TIGR00873 158 AKVDGEPCCTWIGPDGAG-HYVKMVHNGIEYGDMQ 191 (467)
T ss_pred hhcCCCCceEEECCcCHH-HHHHHHHHHHHHHHHH
Confidence 53 699999999 6688999887766654
No 14
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.95 E-value=5.9e-27 Score=183.21 Aligned_cols=163 Identities=14% Similarity=0.137 Sum_probs=142.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhh---cCCCEEEEeccChhhhhhhhcCc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAG---KDVSALVVVISHVDQIDDIFFGH 79 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~---~~~dvii~~v~~~~~~~~v~~~~ 79 (173)
|+|+|||+|.||.+|+++|.++|++|.+|||++++.+.+.+.+.....++.++. +.+|+|++|+|++ .+++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~--- 76 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL--- 76 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH---
Confidence 489999999999999999999999999999999999999888776666766654 4689999999976 888998
Q ss_pred cchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHhhCC---
Q 044797 80 EGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNEFFI--- 144 (173)
Q Consensus 80 ~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~g~--- 144 (173)
+++.+.+++|++++|+++..|.++.++.+.+.++|++|++.+ .++++|+++.++.++|+|+.++.
T Consensus 77 ~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G~~~~~gG~~~~~~~~~~~l~~~~~~~~ 156 (298)
T TIGR00872 77 EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERGYCFMIGGDGEAFARAEPLFADVAPEEQ 156 (298)
T ss_pred HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCeeeeCCCHHHHHHHHHHHHHhcCcCC
Confidence 578888999999999999999999999999999999998864 66889999999999999999985
Q ss_pred -ceeecCCCchHhHhHHhHhhhHhhhh
Q 044797 145 -DKKVNISGQEIHWGYLKINYFIRVMT 170 (173)
Q Consensus 145 -~~~~g~~Gsg~a~~~~~~~~~~~~~~ 170 (173)
..|+|+.|+| ++.+++.|.+.-++.
T Consensus 157 ~~~~~G~~G~~-~~~K~~~n~l~~~~~ 182 (298)
T TIGR00872 157 GYLYCGPCGSG-HFVKMVHNGIEYGMM 182 (298)
T ss_pred CEEEECCccHh-HHHHHHHHHHHHHHH
Confidence 5799999999 556788887765543
No 15
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.95 E-value=2e-26 Score=179.76 Aligned_cols=164 Identities=16% Similarity=0.328 Sum_probs=144.5
Q ss_pred eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccchh
Q 044797 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVL 83 (173)
Q Consensus 4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~ 83 (173)
||+|||+|.||.+|+++|++.|++|++|||++++.+.+.+.|....++..++++++|+||+|+|++.+++.+++.++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 69999999999999999999999999999999999999888887788888999999999999998888888876544577
Q ss_pred hcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------eeeeecCHhhHHHHHHHHHhhCC-ceeec
Q 044797 84 KGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFI-DKKVN 149 (173)
Q Consensus 84 ~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~-~~~~g 149 (173)
+.++++++++|+|+..|.+.+++.+.+++.|++|++.+ .++++|+++.++.++++++.+|. +.++|
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g 160 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVG 160 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeC
Confidence 78899999999999999999999999998999998753 56788999999999999999995 67899
Q ss_pred CCCchHhHhHHhHhhhHhh
Q 044797 150 ISGQEIHWGYLKINYFIRV 168 (173)
Q Consensus 150 ~~Gsg~a~~~~~~~~~~~~ 168 (173)
..|+|.. .++++|.+.-.
T Consensus 161 ~~g~a~~-~Kl~~n~~~~~ 178 (291)
T TIGR01505 161 GNGDGQT-CKVANQIIVAL 178 (291)
T ss_pred CCCHHHH-HHHHHHHHHHH
Confidence 8888855 56777777654
No 16
>PLN02858 fructose-bisphosphate aldolase
Probab=99.95 E-value=2e-26 Score=207.80 Aligned_cols=168 Identities=23% Similarity=0.370 Sum_probs=150.9
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE 80 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~ 80 (173)
|+++|||||+|+||.+||++|+++|++|++|||++++.+.+.+.|.....++.++++++|+|++|+|++++++++++++.
T Consensus 323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~ 402 (1378)
T PLN02858 323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL 402 (1378)
T ss_pred CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence 35789999999999999999999999999999999999999888888888999999999999999999999999997766
Q ss_pred chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc--CCceeeece-------------eeeeecCHhhHHHHHHHHHhhCCc
Q 044797 81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTG--NLTFYILER-------------MFLISSSIDCFTYLFLVKNEFFID 145 (173)
Q Consensus 81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~--~g~~~v~~~-------------~~~~~g~~~~~~~~~~~~~~~g~~ 145 (173)
++.+.+++|++++++||++|.+.+++.+.+.+ +|++|++++ +++++|+++.++.++|+|+.+|..
T Consensus 403 g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~ 482 (1378)
T PLN02858 403 GAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEK 482 (1378)
T ss_pred hHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCc
Confidence 78888999999999999999999999999988 899999864 778999999999999999999965
Q ss_pred e-e-ecCCCchHhHhHHhHhhhHhhh
Q 044797 146 K-K-VNISGQEIHWGYLKINYFIRVM 169 (173)
Q Consensus 146 ~-~-~g~~Gsg~a~~~~~~~~~~~~~ 169 (173)
. + .|..|+|.+ .++++|++..+.
T Consensus 483 i~~~~g~~G~a~~-~KL~nN~l~~~~ 507 (1378)
T PLN02858 483 LYVIKGGCGAGSG-VKMVNQLLAGVH 507 (1378)
T ss_pred EEEeCCCCCHHHH-HHHHHHHHHHHH
Confidence 4 4 367999977 468888876543
No 17
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.95 E-value=4.2e-26 Score=168.18 Aligned_cols=160 Identities=14% Similarity=0.165 Sum_probs=144.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhc---CCCEEEEeccChhhhhhhhcCc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGK---DVSALVVVISHVDQIDDIFFGH 79 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~---~~dvii~~v~~~~~~~~v~~~~ 79 (173)
|+||.||+|+||..+.++|.+.||+|++||+|++..+.+...|++..+++++.++ ....|++++|..+.+..++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi--- 77 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI--- 77 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH---
Confidence 5899999999999999999999999999999999999999999888888887754 5789999999877888898
Q ss_pred cchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHhhCC---
Q 044797 80 EGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNEFFI--- 144 (173)
Q Consensus 80 ~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~g~--- 144 (173)
+++.+.|.+|++|||-.+....+..+..+.+.++|++|++.+ ++|++|++++++.++|+|+.+..
T Consensus 78 ~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~a~~~~~pif~~lA~ge~ 157 (300)
T COG1023 78 DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEEAVERLEPIFKALAPGED 157 (300)
T ss_pred HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHHHHHHHHHHHHhhCcCcC
Confidence 679999999999999999999999999999999999999864 89999999999999999999875
Q ss_pred -ceeecCCCchHhHhHHhHhhhH
Q 044797 145 -DKKVNISGQEIHWGYLKINYFI 166 (173)
Q Consensus 145 -~~~~g~~Gsg~a~~~~~~~~~~ 166 (173)
..|+|++||| +|++++=|-+-
T Consensus 158 Gyl~~Gp~GsG-HfvKMVHNGIE 179 (300)
T COG1023 158 GYLYCGPSGSG-HFVKMVHNGIE 179 (300)
T ss_pred ccccccCCCcc-hhHHHHhccHH
Confidence 3589999999 88888766543
No 18
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.94 E-value=3.1e-25 Score=181.41 Aligned_cols=155 Identities=13% Similarity=0.146 Sum_probs=140.3
Q ss_pred hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-----CCceecChhhhhcC---CCEEEEeccChhhhhhhhcCccchhh
Q 044797 13 YSVDMAASLIRSGYKVQAFEISDPLVDKFFML-----GGIRSASPMDAGKD---VSALVVVISHVDQIDDIFFGHEGVLK 84 (173)
Q Consensus 13 mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~~~---~dvii~~v~~~~~~~~v~~~~~~i~~ 84 (173)
||.+||++|+++|++|.+|||++++.+.+.+. ++..+.+++++++. +|+|++++|++.++++++ +++.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi---~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI---EQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH---HHHHh
Confidence 89999999999999999999999999999874 47888999998874 899999999999999999 57889
Q ss_pred cCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHhhCC-c------
Q 044797 85 GLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNEFFI-D------ 145 (173)
Q Consensus 85 ~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~g~-~------ 145 (173)
.+.+|+++||++|..|.+++++.+.++++|++|++.+ ++|+||++++++.++|+|+.++. +
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~siM~GG~~~a~~~~~piL~~ia~~~~~g~~c 157 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGPSIMPGGQKEAYELVAPILEKIAAKVEDGEPC 157 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCCEEEEeCCHHHHHHHHHHHHHHhhhhcCCCCc
Confidence 9999999999999999999999999999999999864 78999999999999999999985 3
Q ss_pred -eeecCCCchHhHhHHhHhhhHhhhhc
Q 044797 146 -KKVNISGQEIHWGYLKINYFIRVMTD 171 (173)
Q Consensus 146 -~~~g~~Gsg~a~~~~~~~~~~~~~~~ 171 (173)
.|+|+.|+| +|++++.|.+.-++++
T Consensus 158 ~~~vG~~GaG-h~vKmvhN~ie~~~mq 183 (459)
T PRK09287 158 VTYIGPDGAG-HYVKMVHNGIEYGDMQ 183 (459)
T ss_pred eeeeCCCCHH-HHHHHHHHHHHHHHHH
Confidence 799999999 6688999988766654
No 19
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.93 E-value=5.1e-25 Score=170.02 Aligned_cols=162 Identities=15% Similarity=0.243 Sum_probs=127.8
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHCCC----eEEEEcCChHHHHHHHH-cCCceecChhhhhcCCCEEEEeccChhhhhhh
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRSGY----KVQAFEISDPLVDKFFM-LGGIRSASPMDAGKDVSALVVVISHVDQIDDI 75 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~g~----~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v 75 (173)
|.+||+|||+|+||.+|+++|.++|+ +|++|||++++.+.+.+ .|+..+++..++++++|+||+|+| |+++.++
T Consensus 1 ~~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~v 79 (272)
T PRK12491 1 MNKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSV 79 (272)
T ss_pred CCCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHH
Confidence 78899999999999999999999885 69999999999988775 687777788888999999999999 6889998
Q ss_pred hcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC-Cc-eee-------eceeeeeecC----HhhHHHHHHHHHhh
Q 044797 76 FFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN-LT-FYI-------LERMFLISSS----IDCFTYLFLVKNEF 142 (173)
Q Consensus 76 ~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~-g~-~~v-------~~~~~~~~g~----~~~~~~~~~~~~~~ 142 (173)
+ +++.+.++++++++|...+- +..++.+.+... .+ +.+ ..+++.+..+ ++..+.++.+|+.+
T Consensus 80 l---~~l~~~~~~~~lvISi~AGi--~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~ 154 (272)
T PRK12491 80 I---NQIKDQIKNDVIVVTIAAGK--SIKSTENEFDRKLKVIRVMPNTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIF 154 (272)
T ss_pred H---HHHHHhhcCCcEEEEeCCCC--cHHHHHHhcCCCCcEEEECCChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcC
Confidence 8 56777788889999998764 446777777431 22 221 1224444443 34567899999999
Q ss_pred CCcee---------ecCCCchHhHhHHhHhhhHhhhhcC
Q 044797 143 FIDKK---------VNISGQEIHWGYLKINYFIRVMTDG 172 (173)
Q Consensus 143 g~~~~---------~g~~Gsg~a~~~~~~~~~~~~~~~~ 172 (173)
|...+ ++.+||||||+|+ |+|+|.|+
T Consensus 155 G~~~~~~E~~~d~~talsgsgPAf~~~----~~eal~~a 189 (272)
T PRK12491 155 GQTEVVNEKLMDVVTSISGSSPAYVYM----FIEAMADA 189 (272)
T ss_pred CCEEEEcHHHhhhHHHhccCcHHHHHH----HHHHHHHH
Confidence 98655 3789999999998 77777654
No 20
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.93 E-value=1.1e-24 Score=166.01 Aligned_cols=160 Identities=16% Similarity=0.262 Sum_probs=126.8
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCC----CeEEEEcCChHHHHHHH-HcCCceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSG----YKVQAFEISDPLVDKFF-MLGGIRSASPMDAGKDVSALVVVISHVDQIDDIF 76 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g----~~V~~~d~~~~~~~~~~-~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~ 76 (173)
++||+|||+|+||.+|+.+|.++| .+|++.||++++.+.+. +.|+..+++..++++++|+||+|++ |+++++++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK-Pq~~~~vl 79 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK-PQDLEEVL 79 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC-hHhHHHHH
Confidence 478999999999999999999999 58999999999987444 4576667777899999999999999 78899998
Q ss_pred cCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc-eee-------eceeeeeec----CHhhHHHHHHHHHhhCC
Q 044797 77 FGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT-FYI-------LERMFLISS----SIDCFTYLFLVKNEFFI 144 (173)
Q Consensus 77 ~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~-~~v-------~~~~~~~~g----~~~~~~~~~~~~~~~g~ 144 (173)
.++.+ ..+++++|++..+. ....+.+.+....+ +.+ ..+++.++. +++..+.++.+|+.+|.
T Consensus 80 ---~~l~~-~~~~~lvISiaAGv--~~~~l~~~l~~~~vvR~MPNt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~ 153 (266)
T COG0345 80 ---SKLKP-LTKDKLVISIAAGV--SIETLERLLGGLRVVRVMPNTPALVGAGVTAISANANVSEEDKAFVEALLSAVGK 153 (266)
T ss_pred ---HHhhc-ccCCCEEEEEeCCC--CHHHHHHHcCCCceEEeCCChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCC
Confidence 45655 77899999998764 44677777752222 211 223555555 34667799999999998
Q ss_pred ceee---------cCCCchHhHhHHhHhhhHhhhhcC
Q 044797 145 DKKV---------NISGQEIHWGYLKINYFIRVMTDG 172 (173)
Q Consensus 145 ~~~~---------g~~Gsg~a~~~~~~~~~~~~~~~~ 172 (173)
+.++ +.+||||||+|+ |+|+|+|+
T Consensus 154 v~~v~E~~~da~TaisGSgPAyv~~----~iEal~~a 186 (266)
T COG0345 154 VVEVEESLMDAVTALSGSGPAYVFL----FIEALADA 186 (266)
T ss_pred eEEechHHhhHHHHHhcCCHHHHHH----HHHHHHHH
Confidence 7765 789999999998 88888774
No 21
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.92 E-value=1.3e-23 Score=161.94 Aligned_cols=157 Identities=17% Similarity=0.221 Sum_probs=122.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC----eEEEE-cCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY----KVQAF-EISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFF 77 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~----~V~~~-d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~ 77 (173)
|||+|||+|+||.+|+++|+++|+ +|++| ||++++.+.+.+.|+...+++.++++++|+||+|+| ++++++++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 589999999999999999999998 89999 999999988888898888888999999999999998 67889998
Q ss_pred CccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee-c---------e-eeeee---cCHhhHHHHHHHHHhhC
Q 044797 78 GHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL-E---------R-MFLIS---SSIDCFTYLFLVKNEFF 143 (173)
Q Consensus 78 ~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~-~---------~-~~~~~---g~~~~~~~~~~~~~~~g 143 (173)
.++.+.+++++++++..++. ....+.+.+... +++. . . ..++. ++++.++.++++|+.+|
T Consensus 79 --~~l~~~~~~~~~iIs~~~g~--~~~~l~~~~~~~--~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G 152 (266)
T PLN02688 79 --TELRPLLSKDKLLVSVAAGI--TLADLQEWAGGR--RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVG 152 (266)
T ss_pred --HHHHhhcCCCCEEEEecCCC--cHHHHHHHcCCC--CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCC
Confidence 46777788899988774433 223444444322 3332 1 1 22332 35678899999999999
Q ss_pred Cceee---------cCCCchHhHhHHhHhhhHhhhhc
Q 044797 144 IDKKV---------NISGQEIHWGYLKINYFIRVMTD 171 (173)
Q Consensus 144 ~~~~~---------g~~Gsg~a~~~~~~~~~~~~~~~ 171 (173)
.+.++ +.+||||+|+|. ++++|++
T Consensus 153 ~~~~~~e~~~d~~~~~~g~g~a~~~~----~~~a~~e 185 (266)
T PLN02688 153 KIWVVDEKLLDAVTGLSGSGPAYIFL----AIEALAD 185 (266)
T ss_pred CEEEeCHHHcchhHhhhcCHHHHHHH----HHHHHHH
Confidence 96564 789999999988 6666654
No 22
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.91 E-value=4.9e-23 Score=159.80 Aligned_cols=157 Identities=10% Similarity=0.135 Sum_probs=121.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCC----CeEEEEcCCh-HHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSG----YKVQAFEISD-PLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIF 76 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g----~~V~~~d~~~-~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~ 76 (173)
|||+|||+|+||.+|+++|.++| ++|++|||++ ++.+.+... |+....++.++++++|+||+|+| |+++.+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~-p~~~~~vl 82 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMK-PKDVAEAL 82 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeC-HHHHHHHH
Confidence 69999999999999999999998 7899999976 466776554 77778888888999999999999 66777877
Q ss_pred cCccchhhcCCCCCEEEEc-CCCCHHHHHHHHHHHhcCCceeee----------ce-eeeeecC---HhhHHHHHHHHHh
Q 044797 77 FGHEGVLKGLQKGAVIILQ-STILPSHMQKLEKTFTGNLTFYIL----------ER-MFLISSS---IDCFTYLFLVKNE 141 (173)
Q Consensus 77 ~~~~~i~~~l~~g~~ii~~-st~~~~~~~~l~~~l~~~g~~~v~----------~~-~~~~~g~---~~~~~~~~~~~~~ 141 (173)
+++.+.++++++|+++ ++.++++.++ .+. .+..++. .. +.+++++ ++.++.++++|+.
T Consensus 83 ---~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~-~~~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~ 155 (279)
T PRK07679 83 ---IPFKEYIHNNQLIISLLAGVSTHSIRN---LLQ-KDVPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFET 155 (279)
T ss_pred ---HHHHhhcCCCCEEEEECCCCCHHHHHH---HcC-CCCeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHh
Confidence 4677778889999997 6676665544 332 2222221 11 4444554 4577899999999
Q ss_pred hCCcee---------ecCCCchHhHhHHhHhhhHhhhhc
Q 044797 142 FFIDKK---------VNISGQEIHWGYLKINYFIRVMTD 171 (173)
Q Consensus 142 ~g~~~~---------~g~~Gsg~a~~~~~~~~~~~~~~~ 171 (173)
+|...+ ++.+||||+|++. ++++|.+
T Consensus 156 ~G~~~~v~e~~~~~~~a~~Gsgpa~~~~----~~eal~e 190 (279)
T PRK07679 156 IGLVSVVEEEDMHAVTALSGSGPAYIYY----VVEAMEK 190 (279)
T ss_pred CCcEEEeCHHHhhhHHHhhcCHHHHHHH----HHHHHHH
Confidence 998655 7999999999998 6666654
No 23
>PRK07680 late competence protein ComER; Validated
Probab=99.89 E-value=8.9e-22 Score=152.31 Aligned_cols=159 Identities=10% Similarity=0.085 Sum_probs=122.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC----eEEEEcCChHHHHHHHHc--CCceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY----KVQAFEISDPLVDKFFML--GGIRSASPMDAGKDVSALVVVISHVDQIDDIF 76 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~----~V~~~d~~~~~~~~~~~~--g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~ 76 (173)
|+|+|||+|+||.+++++|.+.|+ +|.+|+|++++.+.+.+. ++....+..++++++|+||+|+| +.++.+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH
Confidence 489999999999999999999983 799999999988877663 67777788888899999999999 67788888
Q ss_pred cCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec-------e-eeeeec---CHhhHHHHHHHHHhhCCc
Q 044797 77 FGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE-------R-MFLISS---SIDCFTYLFLVKNEFFID 145 (173)
Q Consensus 77 ~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~-------~-~~~~~g---~~~~~~~~~~~~~~~g~~ 145 (173)
+++.+++.++++|++++++. ..+.+.+.+..+.++++.. + +.+..+ +++..+.++++|+.+|..
T Consensus 80 ---~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~~ 154 (273)
T PRK07680 80 ---QKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIPSITNRALSGASLFTFGSRCSEEDQQKLERLFSNISTP 154 (273)
T ss_pred ---HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECCChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCCE
Confidence 46777888899999998743 4567777765544555431 2 222233 345678899999999976
Q ss_pred eee---------cCCCchHhHhHHhHhhhHh
Q 044797 146 KKV---------NISGQEIHWGYLKINYFIR 167 (173)
Q Consensus 146 ~~~---------g~~Gsg~a~~~~~~~~~~~ 167 (173)
.++ ..+||||+|+|..++.|++
T Consensus 155 ~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~ 185 (273)
T PRK07680 155 LVIEEDITRVSSDIVSCGPAFFSYLLQRFID 185 (273)
T ss_pred EEEChHhcchhhhhccchHHHHHHHHHHHHH
Confidence 554 5689999999984444443
No 24
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.88 E-value=1.9e-21 Score=150.71 Aligned_cols=160 Identities=9% Similarity=0.069 Sum_probs=119.3
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCC----CeEEEEcCCh-HHHHHHHHc--CCceecChhhhhcCCCEEEEeccChhhhhh
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSG----YKVQAFEISD-PLVDKFFML--GGIRSASPMDAGKDVSALVVVISHVDQIDD 74 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g----~~V~~~d~~~-~~~~~~~~~--g~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 74 (173)
|++|+|||+|+||.+++++|.+.| ++|.+|+|++ ++.+.+... +.....+..++++++|+||+|+| ++++.+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~ 79 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLP 79 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHH
Confidence 468999999999999999999988 7899999864 445554443 34455677888899999999999 677888
Q ss_pred hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc-eeee-------ceeeeeecC----HhhHHHHHHHHHhh
Q 044797 75 IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT-FYIL-------ERMFLISSS----IDCFTYLFLVKNEF 142 (173)
Q Consensus 75 v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~-~~v~-------~~~~~~~g~----~~~~~~~~~~~~~~ 142 (173)
++ +++.+++++++++++...+- +..++.+.+....+ +.+. .+++.+..+ ++..+.++.+|+.+
T Consensus 80 vl---~~l~~~l~~~~~ivS~~aGi--~~~~l~~~~~~~~vvR~MPN~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~ 154 (277)
T PRK06928 80 LL---KDCAPVLTPDRHVVSIAAGV--SLDDLLEITPGLQVSRLIPSLTSAVGVGTSLVAHAETVNEANKSRLEETLSHF 154 (277)
T ss_pred HH---HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCCEEEEeCccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhC
Confidence 88 46777788888999887754 33467776643222 2221 224455443 34567899999999
Q ss_pred CCcee---------ecCCCchHhHhHHhHhhhHhhhhc
Q 044797 143 FIDKK---------VNISGQEIHWGYLKINYFIRVMTD 171 (173)
Q Consensus 143 g~~~~---------~g~~Gsg~a~~~~~~~~~~~~~~~ 171 (173)
|...+ ++.+||||||+|+ |+++|+|
T Consensus 155 G~~~~v~E~~~d~~tal~gsgPA~~~~----~~~al~~ 188 (277)
T PRK06928 155 SHVMTIREENMDIASNLTSSSPGFIAA----IFEEFAE 188 (277)
T ss_pred CCEEEEchhhCceeeeeecCHHHHHHH----HHHHHHH
Confidence 98654 4889999999998 7777776
No 25
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.86 E-value=1.8e-20 Score=144.53 Aligned_cols=158 Identities=16% Similarity=0.223 Sum_probs=118.8
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHCC---CeEEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRSG---YKVQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIF 76 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~g---~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~ 76 (173)
|||+|+|||+|.||..+++.|.+.| ++|.+|+|++++.+.+.+. |+....+..++++++|+||+|+| +.++++++
T Consensus 1 ~mm~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~-~~~~~~v~ 79 (267)
T PRK11880 1 MMKKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVK-PQVMEEVL 79 (267)
T ss_pred CCCEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcC-HHHHHHHH
Confidence 8899999999999999999999998 7899999999998888775 77777788888899999999999 56788887
Q ss_pred cCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee----------ceeeeee----cCHhhHHHHHHHHHhh
Q 044797 77 FGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL----------ERMFLIS----SSIDCFTYLFLVKNEF 142 (173)
Q Consensus 77 ~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~----------~~~~~~~----g~~~~~~~~~~~~~~~ 142 (173)
+.+.+.+ +++|++.+++.+ .+.+.+.+. .+.+++. .+...+. .+++..+.++.+++.+
T Consensus 80 ---~~l~~~~--~~~vvs~~~gi~--~~~l~~~~~-~~~~iv~~~P~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~l 151 (267)
T PRK11880 80 ---SELKGQL--DKLVVSIAAGVT--LARLERLLG-ADLPVVRAMPNTPALVGAGMTALTANALVSAEDRELVENLLSAF 151 (267)
T ss_pred ---HHHHhhc--CCEEEEecCCCC--HHHHHHhcC-CCCcEEEecCCchHHHcCceEEEecCCCCCHHHHHHHHHHHHhC
Confidence 4565555 567887776543 345555553 2333321 1122222 3567788999999999
Q ss_pred CCceee----------cCCCchHhHhHHhHhhhHhhhhc
Q 044797 143 FIDKKV----------NISGQEIHWGYLKINYFIRVMTD 171 (173)
Q Consensus 143 g~~~~~----------g~~Gsg~a~~~~~~~~~~~~~~~ 171 (173)
|...++ ..+||+|+|.|. ++++|.+
T Consensus 152 G~~~~~~~e~~~d~~~a~~~~~pa~~~~----~~~~~~~ 186 (267)
T PRK11880 152 GKVVWVDDEKQMDAVTAVSGSGPAYVFL----FIEALAD 186 (267)
T ss_pred CeEEEECChHhcchHHHHhcChHHHHHH----HHHHHHH
Confidence 976554 478999999988 5555543
No 26
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.86 E-value=6.4e-21 Score=149.57 Aligned_cols=158 Identities=14% Similarity=0.220 Sum_probs=135.8
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC-----CceecChhhh---hcCCCEEEEeccChhhhh
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG-----GIRSASPMDA---GKDVSALVVVISHVDQID 73 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g-----~~~~~~~~~~---~~~~dvii~~v~~~~~~~ 73 (173)
...||+||++.||+.+|.++.++|+.|.+|||++++.+.+.+.. +..+.+.+|. ++...-|+++|+....++
T Consensus 3 ~~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD 82 (473)
T COG0362 3 KADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVD 82 (473)
T ss_pred ccceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHH
Confidence 46899999999999999999999999999999999999987752 4456677665 557889999999777778
Q ss_pred hhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec------------eeeeeecCHhhHHHHHHHHHh
Q 044797 74 DIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE------------RMFLISSSIDCFTYLFLVKNE 141 (173)
Q Consensus 74 ~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~------------~~~~~~g~~~~~~~~~~~~~~ 141 (173)
.++ +++.++|.+|+++||-++....++.+..+.|.+.|++|+.. +..|.||++++++.++|+|..
T Consensus 83 ~~I---~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPSiMpGG~~eay~~v~pil~~ 159 (473)
T COG0362 83 AVI---EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPSIMPGGQKEAYELVAPILTK 159 (473)
T ss_pred HHH---HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCCcCCCCCHHHHHHHHHHHHH
Confidence 888 67999999999999999888888888888899999999864 388999999999999999998
Q ss_pred hC-------CceeecCCCchHhHhHHhHh
Q 044797 142 FF-------IDKKVNISGQEIHWGYLKIN 163 (173)
Q Consensus 142 ~g-------~~~~~g~~Gsg~a~~~~~~~ 163 (173)
+. +..|+|+.|+| +|++++=|
T Consensus 160 IaAk~~g~pCc~~iG~~GAG-HfVKmVHN 187 (473)
T COG0362 160 IAAKVDGEPCCTWIGPDGAG-HFVKMVHN 187 (473)
T ss_pred HHhhcCCCCceeeECCCCCC-ceeeeeec
Confidence 85 24689999999 78887533
No 27
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.85 E-value=2.4e-20 Score=151.87 Aligned_cols=161 Identities=19% Similarity=0.174 Sum_probs=126.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-------------------cC-CceecChhhhhcCCCEE
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-------------------LG-GIRSASPMDAGKDVSAL 62 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~~dvi 62 (173)
|||+|||+|.||.++|..|+++|++|++||+++++++.+.+ .| +..++++.++++++|+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 48999999999999999999999999999999999887653 13 45566778888999999
Q ss_pred EEeccChhh---------hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC--Cc----e--eeece----
Q 044797 63 VVVISHVDQ---------IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN--LT----F--YILER---- 121 (173)
Q Consensus 63 i~~v~~~~~---------~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~--g~----~--~v~~~---- 121 (173)
|+|+|++.+ +..++ +++.+.+++++++++.||..|.+.+++.+.+.+. |. . +...+
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~---~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~ 157 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAA---ETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLR 157 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHH---HHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCC
Confidence 999997643 44444 4677888999999999999999998887544332 22 1 11111
Q ss_pred ------------eeeeecCHhhHHHHHHHHHhhC--CceeecCCCchHhHhHHhHhhhHh
Q 044797 122 ------------MFLISSSIDCFTYLFLVKNEFF--IDKKVNISGQEIHWGYLKINYFIR 167 (173)
Q Consensus 122 ------------~~~~~g~~~~~~~~~~~~~~~g--~~~~~g~~Gsg~a~~~~~~~~~~~ 167 (173)
.+++|+++++.+.++++++.++ ...+++..|++-. .+++.|.+..
T Consensus 158 ~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~-~Kl~~N~~~a 216 (411)
T TIGR03026 158 EGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEM-IKLAENTFRA 216 (411)
T ss_pred CCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHH-HHHHHHHHHH
Confidence 4677888899999999999996 5678898888855 5677888743
No 28
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.84 E-value=3.7e-20 Score=142.30 Aligned_cols=153 Identities=16% Similarity=0.153 Sum_probs=110.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCC----CeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSG----YKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG 78 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g----~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~ 78 (173)
|||+|||+|+||+++++.|.+++ .++++++|++++. +.....++.++++++|+||+|+| |+++++++
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl-- 74 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVL-- 74 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHH--
Confidence 79999999999999999999887 2499999987652 33456677788889999999999 78899998
Q ss_pred ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc--CCceeee-------ceeeeeec----CHhhHHHHHHHHHhhCCc
Q 044797 79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG--NLTFYIL-------ERMFLISS----SIDCFTYLFLVKNEFFID 145 (173)
Q Consensus 79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~--~g~~~v~-------~~~~~~~g----~~~~~~~~~~~~~~~g~~ 145 (173)
.++.+++.++.+|.+.+.++.+. +.+.+.. ..++++. .+.+.+.. +++..+.++.+|+.+|.+
T Consensus 75 -~~i~~~l~~~~iIS~~aGi~~~~---l~~~~~~~~~vvr~mPn~p~~~g~g~t~i~~~~~~~~~~~~~v~~l~~~~G~~ 150 (260)
T PTZ00431 75 -LEIKPYLGSKLLISICGGLNLKT---LEEMVGVEAKIVRVMPNTPSLVGQGSLVFCANNNVDSTDKKKVIDIFSACGII 150 (260)
T ss_pred -HHHHhhccCCEEEEEeCCccHHH---HHHHcCCCCeEEEECCCchhHhcceeEEEEeCCCCCHHHHHHHHHHHHhCCcE
Confidence 46777776544444555555443 4444432 1233322 23444443 234678899999999986
Q ss_pred ee---------ecCCCchHhHhHHhHhhhHhhhhcC
Q 044797 146 KK---------VNISGQEIHWGYLKINYFIRVMTDG 172 (173)
Q Consensus 146 ~~---------~g~~Gsg~a~~~~~~~~~~~~~~~~ 172 (173)
.+ ++.+||||||+|+ |+++|+|+
T Consensus 151 ~~v~E~~~d~~ta~~gsgPA~~~~----~~~al~~~ 182 (260)
T PTZ00431 151 QEIKEKDMDIATAISGCGPAYVFL----FIESLIDA 182 (260)
T ss_pred EEEChHHcchhhhhcCCHHHHHHH----HHHHHHHH
Confidence 55 4889999999998 77777764
No 29
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.83 E-value=1.3e-19 Score=147.70 Aligned_cols=163 Identities=13% Similarity=0.141 Sum_probs=123.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCc----------------eecChhhhhcCCCEEEEec
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGI----------------RSASPMDAGKDVSALVVVI 66 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~----------------~~~~~~~~~~~~dvii~~v 66 (173)
|||+|||+|+||.++|.+|.+ |++|++||+++++++.+. .|.. ..++..+.+++||++|+|+
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V 84 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV 84 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence 799999999999999999877 699999999999999987 3322 3344456789999999999
Q ss_pred cCh------hhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHH-Hhc-CCceeee--------ce---------
Q 044797 67 SHV------DQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKT-FTG-NLTFYIL--------ER--------- 121 (173)
Q Consensus 67 ~~~------~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~-l~~-~g~~~v~--------~~--------- 121 (173)
|+| .+++.++...+++.+++++|+++|+.||+.|.+++++.+. +.+ .|..+.+ ++
T Consensus 85 ptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~ 164 (425)
T PRK15182 85 PTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHR 164 (425)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccccc
Confidence 987 3446666544678889999999999999999999875443 332 3544322 11
Q ss_pred -----eeeeecCHhhHHHHHHHHHhhC--CceeecCCCchHhHhHHhHhhhHhh
Q 044797 122 -----MFLISSSIDCFTYLFLVKNEFF--IDKKVNISGQEIHWGYLKINYFIRV 168 (173)
Q Consensus 122 -----~~~~~g~~~~~~~~~~~~~~~g--~~~~~g~~Gsg~a~~~~~~~~~~~~ 168 (173)
.+..|.++++.+.++++++.+. ...+++..|+|-. .+++.|.|...
T Consensus 165 ~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~-~Kl~~N~~~av 217 (425)
T PRK15182 165 LTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEA-AKVIENTQRDL 217 (425)
T ss_pred ccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHH-HHHHHHHHHHH
Confidence 3455666777888999998875 3567888888855 66778877643
No 30
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.83 E-value=3.9e-19 Score=135.38 Aligned_cols=157 Identities=10% Similarity=0.113 Sum_probs=113.9
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC---e-EEEEcC-ChHHHHHHHH-cCCceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY---K-VQAFEI-SDPLVDKFFM-LGGIRSASPMDAGKDVSALVVVISHVDQIDDIF 76 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~---~-V~~~d~-~~~~~~~~~~-~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~ 76 (173)
+||+|||+|+||.++++.|.++|. + +++++| ++++.+.+.+ .++..+.+.+++++++|+|++++| ++..++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp-~~~~~~v~ 83 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMP-PSAHEELL 83 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecC-HHHHHHHH
Confidence 689999999999999999998873 3 778887 4777777765 377777788888999999999999 56678887
Q ss_pred cCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee----------ce----eeeeecCHhhHHHHHHHHHhh
Q 044797 77 FGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL----------ER----MFLISSSIDCFTYLFLVKNEF 142 (173)
Q Consensus 77 ~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~----------~~----~~~~~g~~~~~~~~~~~~~~~ 142 (173)
+++.+.++ +++|++++.+. +...+.+.+.. +..++. .+ .+....+++..+.++.+|+.+
T Consensus 84 ---~~l~~~~~-~~~vis~~~gi--~~~~l~~~~~~-~~~v~r~~Pn~a~~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~ 156 (245)
T PRK07634 84 ---AELSPLLS-NQLVVTVAAGI--GPSYLEERLPK-GTPVAWIMPNTAAEIGKSISLYTMGQSVNETHKETLQLILKGI 156 (245)
T ss_pred ---HHHHhhcc-CCEEEEECCCC--CHHHHHHHcCC-CCeEEEECCcHHHHHhcCCeEEeeCCCCCHHHHHHHHHHHHhC
Confidence 45655554 67888887654 23356666532 222211 11 122234567788999999999
Q ss_pred CCceee---------cCCCchHhHhHHhHhhhHhhhhc
Q 044797 143 FIDKKV---------NISGQEIHWGYLKINYFIRVMTD 171 (173)
Q Consensus 143 g~~~~~---------g~~Gsg~a~~~~~~~~~~~~~~~ 171 (173)
|...++ +.+||||+|+|. |+++|.|
T Consensus 157 G~~~~~~e~~~~~~~a~~gs~pa~~~~----~~~a~~~ 190 (245)
T PRK07634 157 GTSQLCTEEEVHQLTAVTGSAPAFLYY----FAESLIE 190 (245)
T ss_pred CCEEEECHHHcchHHhhhcchHHHHHH----HHHHHHH
Confidence 976543 789999999998 6666655
No 31
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.83 E-value=2.3e-19 Score=146.10 Aligned_cols=159 Identities=17% Similarity=0.171 Sum_probs=122.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-------------------CCceecChhhhhcCCCEEE
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-------------------GGIRSASPMDAGKDVSALV 63 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~dvii 63 (173)
+||+|||+|.||.++|.+|+++|++|++||+++++++.+... |.....+ ..+++|+||
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~---~~~~aDvvi 80 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATT---TPEPADAFL 80 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeec---ccccCCEEE
Confidence 799999999999999999999999999999999999875422 1111111 134799999
Q ss_pred EeccCh---------hhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce--------------eee-
Q 044797 64 VVISHV---------DQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF--------------YIL- 119 (173)
Q Consensus 64 ~~v~~~---------~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~--------------~v~- 119 (173)
+|+|+| ..+..++ +++.+++++|+++|+.||..|.+++++...+.+.+.. ++.
T Consensus 81 i~vptp~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~ 157 (415)
T PRK11064 81 IAVPTPFKGDHEPDLTYVEAAA---KSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYC 157 (415)
T ss_pred EEcCCCCCCCCCcChHHHHHHH---HHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEEC
Confidence 999976 3555555 5688899999999999999999999998877654321 111
Q ss_pred -----ce---------eeeeec-CHhhHHHHHHHHHhhCC-ceeecCCCchHhHhHHhHhhhHhh
Q 044797 120 -----ER---------MFLISS-SIDCFTYLFLVKNEFFI-DKKVNISGQEIHWGYLKINYFIRV 168 (173)
Q Consensus 120 -----~~---------~~~~~g-~~~~~~~~~~~~~~~g~-~~~~g~~Gsg~a~~~~~~~~~~~~ 168 (173)
.+ ..+++| ++++.+.++++++.++. +.+++..+++-. .+++.|.|...
T Consensus 158 PE~~~~G~~~~~~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~-~Kl~~N~~~a~ 221 (415)
T PRK11064 158 PERVLPGQVMVELIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEM-CKLTENSFRDV 221 (415)
T ss_pred CCccCCCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHH-HHHHHHHHHHH
Confidence 11 356688 88899999999999985 457888888866 56777777643
No 32
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.82 E-value=6.1e-19 Score=142.27 Aligned_cols=160 Identities=13% Similarity=0.102 Sum_probs=122.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH----------------cCCce--ecChhhhhcCCCEEEE
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM----------------LGGIR--SASPMDAGKDVSALVV 64 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~----------------~g~~~--~~~~~~~~~~~dvii~ 64 (173)
|||+|||+|.||.++|..++ .||+|++||+++++++.+.+ .+.+. +.+..++++++|+||+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 48999999999999997776 59999999999999988765 22233 3336677899999999
Q ss_pred eccCh----------hhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece-------------
Q 044797 65 VISHV----------DQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------- 121 (173)
Q Consensus 65 ~v~~~----------~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------- 121 (173)
|+|++ ..++.++ +++.+ +++|++++..||..|.+++++.+.+.+.++.|-.++
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~---~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~~PE~l~~G~a~~d~~~p 155 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVI---KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIFSPEFLREGKALYDNLHP 155 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHH---HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEECcccccCCcccccccCC
Confidence 99976 3555565 45665 689999999999999999999998877777653221
Q ss_pred -eeeeecCHhhHHHHHHHHHh--hCCce--eecCCCchHhHhHHhHhhhHhh
Q 044797 122 -MFLISSSIDCFTYLFLVKNE--FFIDK--KVNISGQEIHWGYLKINYFIRV 168 (173)
Q Consensus 122 -~~~~~g~~~~~~~~~~~~~~--~g~~~--~~g~~Gsg~a~~~~~~~~~~~~ 168 (173)
.+++|++++..+.+.+++.. ++... +++..+++-. .+++.|.|...
T Consensus 156 ~rvv~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~-~Kl~~N~~~a~ 206 (388)
T PRK15057 156 SRIVIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEA-IKLFANTYLAM 206 (388)
T ss_pred CEEEEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHH-HHHHHHHHHHH
Confidence 56778788878888888754 44322 5788888844 66778877653
No 33
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.81 E-value=1.3e-18 Score=135.64 Aligned_cols=146 Identities=16% Similarity=0.083 Sum_probs=112.2
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-------c-----------------CCceecChhhhhc
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-------L-----------------GGIRSASPMDAGK 57 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------~-----------------g~~~~~~~~~~~~ 57 (173)
++||+|||+|.||..+|..|+++|++|++||+++++++++.+ . .++.+++..++++
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 80 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVA 80 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhc
Confidence 368999999999999999999999999999999998876542 1 1335667788899
Q ss_pred CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEE-EEcCCCCHHHHHHHHHHHh-cCCceeeece-----eeeeec---
Q 044797 58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVI-ILQSTILPSHMQKLEKTFT-GNLTFYILER-----MFLISS--- 127 (173)
Q Consensus 58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~i-i~~st~~~~~~~~l~~~l~-~~g~~~v~~~-----~~~~~g--- 127 (173)
+||+||+|+|++.+++..++ .++.+.+++++++ +++||..+....+..+... ..|.||+... +.++++
T Consensus 81 ~aD~Vi~avpe~~~~k~~~~--~~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~~Pv~~~~Lve~v~g~~t 158 (288)
T PRK09260 81 DADLVIEAVPEKLELKKAVF--ETADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFFNPVHKMKLVELIRGLET 158 (288)
T ss_pred CCCEEEEeccCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecCCCcccCceEEEeCCCCC
Confidence 99999999998877776665 3577788889877 6888888876544333221 1477887432 556666
Q ss_pred CHhhHHHHHHHHHhhCC-ceeec
Q 044797 128 SIDCFTYLFLVKNEFFI-DKKVN 149 (173)
Q Consensus 128 ~~~~~~~~~~~~~~~g~-~~~~g 149 (173)
++++++.++++++.+|+ +.+++
T Consensus 159 ~~~~~~~~~~~l~~lg~~~v~v~ 181 (288)
T PRK09260 159 SDETVQVAKEVAEQMGKETVVVN 181 (288)
T ss_pred CHHHHHHHHHHHHHcCCeEEEec
Confidence 78899999999999996 45665
No 34
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.79 E-value=8e-18 Score=133.54 Aligned_cols=160 Identities=15% Similarity=0.044 Sum_probs=123.1
Q ss_pred CeEEEEeCChh--------------------hHHHHHHHHHCCCeEEEEcCChH-----HHHHHHHcCCceecChhhhhc
Q 044797 3 SKVGFVGLDEY--------------------SVDMAASLIRSGYKVQAFEISDP-----LVDKFFMLGGIRSASPMDAGK 57 (173)
Q Consensus 3 ~~IgiiG~G~m--------------------G~~ia~~l~~~g~~V~~~d~~~~-----~~~~~~~~g~~~~~~~~~~~~ 57 (173)
|||.|.|.|+- |.+||.+|.++|++|++|||+++ +.+.+.+.|+..+.+..++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~ 80 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK 80 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh
Confidence 58999999874 88999999999999999999987 445566778888888889999
Q ss_pred CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHH-HHHHHHHh----cCCceeeece----------e
Q 044797 58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHM-QKLEKTFT----GNLTFYILER----------M 122 (173)
Q Consensus 58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~-~~l~~~l~----~~g~~~v~~~----------~ 122 (173)
++|+||+|+|++.++++++ .++.++++++++|+|+|++++... +.+.+.+. ..|+.+.... .
T Consensus 81 ~ADvVIlaVP~~~~v~~Vl---~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Gae~g~l~ 157 (342)
T PRK12557 81 HGEIHILFTPFGKKTVEIA---KNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGTPQHGHY 157 (342)
T ss_pred CCCEEEEECCCcHHHHHHH---HHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccccccchhe
Confidence 9999999999766588888 478889999999999999999887 67777764 2345443211 2
Q ss_pred eeeec--------CHhhHHHHHHHHHhhCCceeecCCCchHhHhHHhHhhhH
Q 044797 123 FLISS--------SIDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFI 166 (173)
Q Consensus 123 ~~~~g--------~~~~~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~~ 166 (173)
++.++ +++.+++++++++.+|...++...|.+.+ +++.+|++.
T Consensus 158 Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G~~v~~~~~g~~~~-vk~~~n~l~ 208 (342)
T PRK12557 158 VIAGKTTNGTELATEEQIEKCVELAESIGKEPYVVPADVVSA-VADMGSLVT 208 (342)
T ss_pred EEeCCCcccccCCCHHHHHHHHHHHHHcCCEEEEeCHHHHHH-HHHHHHHHH
Confidence 33333 67889999999999998556554566544 455555544
No 35
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.79 E-value=1.3e-17 Score=131.18 Aligned_cols=150 Identities=10% Similarity=0.033 Sum_probs=109.1
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHH-----------HHcCC-------------ceecChhhhhc
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKF-----------FMLGG-------------IRSASPMDAGK 57 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g~-------------~~~~~~~~~~~ 57 (173)
+++|+|||+|.||.++|..|+++|++|++||+++++.+.. .+.|. ..+.++.++++
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~ 81 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVA 81 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhC
Confidence 4689999999999999999999999999999999877653 23342 46678888889
Q ss_pred CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece---------eeeee--
Q 044797 58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER---------MFLIS-- 126 (173)
Q Consensus 58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~---------~~~~~-- 126 (173)
++|+|+.|+|++.+++..++ .++.+..+++ .++.+++. +....++.+.+...+..+.+.+ +-+++
T Consensus 82 ~ad~Vi~avpe~~~~k~~~~--~~l~~~~~~~-~ii~ssts-~~~~~~la~~~~~~~~~~~~hp~~p~~~~~lveiv~~~ 157 (308)
T PRK06129 82 DADYVQESAPENLELKRALF--AELDALAPPH-AILASSTS-ALLASAFTEHLAGRERCLVAHPINPPYLIPVVEVVPAP 157 (308)
T ss_pred CCCEEEECCcCCHHHHHHHH--HHHHHhCCCc-ceEEEeCC-CCCHHHHHHhcCCcccEEEEecCCCcccCceEEEeCCC
Confidence 99999999998766666654 2354445444 44444443 3456677787755444443332 22454
Q ss_pred -cCHhhHHHHHHHHHhhCC-ceeecCCCchH
Q 044797 127 -SSIDCFTYLFLVKNEFFI-DKKVNISGQEI 155 (173)
Q Consensus 127 -g~~~~~~~~~~~~~~~g~-~~~~g~~Gsg~ 155 (173)
++++.++.++++++.+|. +.+++..|.|.
T Consensus 158 ~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~ 188 (308)
T PRK06129 158 WTAPATLARAEALYRAAGQSPVRLRREIDGF 188 (308)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEecCCCccH
Confidence 778899999999999996 57888777773
No 36
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.78 E-value=6.1e-18 Score=133.61 Aligned_cols=140 Identities=12% Similarity=0.143 Sum_probs=106.6
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc--------------CCceecChhhhhcCCCEEEEecc
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML--------------GGIRSASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------------g~~~~~~~~~~~~~~dvii~~v~ 67 (173)
||||+|||+|.||+.++..|.+.|++|++|+|++++.+.+.+. +....++++++++++|+||+|+|
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVP 80 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCC
Confidence 3689999999999999999999999999999999998887765 24456677778889999999999
Q ss_pred ChhhhhhhhcCccchhhcCCCCCEEEEcC-CCCHHHHHHHHHHHhcC-----Cceeeece-------------eeeeecC
Q 044797 68 HVDQIDDIFFGHEGVLKGLQKGAVIILQS-TILPSHMQKLEKTFTGN-----LTFYILER-------------MFLISSS 128 (173)
Q Consensus 68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~s-t~~~~~~~~l~~~l~~~-----g~~~v~~~-------------~~~~~g~ 128 (173)
+ .++++++ +++.+.+.+++++++++ +..+.+.+++.+.+.+. ...++..+ ..+.+++
T Consensus 81 ~-~~~~~v~---~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~ 156 (325)
T PRK00094 81 S-QALREVL---KQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTD 156 (325)
T ss_pred H-HHHHHHH---HHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCC
Confidence 5 6788887 46777888899999887 66665555555555432 22233221 2334556
Q ss_pred HhhHHHHHHHHHhhCCc
Q 044797 129 IDCFTYLFLVKNEFFID 145 (173)
Q Consensus 129 ~~~~~~~~~~~~~~g~~ 145 (173)
.+..+.+.++|+..|..
T Consensus 157 ~~~~~~~~~~l~~~~~~ 173 (325)
T PRK00094 157 EELAERVQELFHSPYFR 173 (325)
T ss_pred HHHHHHHHHHhCCCCEE
Confidence 78889999999888753
No 37
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.78 E-value=8e-18 Score=133.39 Aligned_cols=138 Identities=12% Similarity=0.092 Sum_probs=107.3
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc--------C------CceecChhhhhcCCCEEEEecc
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML--------G------GIRSASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------g------~~~~~~~~~~~~~~dvii~~v~ 67 (173)
+|||+|||+|.||++++.+|.++|++|++|+|++++.+.+.+. | +..++++.++++++|+|++++|
T Consensus 4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~ 83 (328)
T PRK14618 4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP 83 (328)
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence 3699999999999999999999999999999999988877653 2 3356678888899999999999
Q ss_pred ChhhhhhhhcCccchhhcCCCCCEEEEcCCC-CHHH--HHHHHHHHhc---CCceeeece-------------eeeeecC
Q 044797 68 HVDQIDDIFFGHEGVLKGLQKGAVIILQSTI-LPSH--MQKLEKTFTG---NLTFYILER-------------MFLISSS 128 (173)
Q Consensus 68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~-~~~~--~~~l~~~l~~---~g~~~v~~~-------------~~~~~g~ 128 (173)
+. ++++++ +.++++.++++++++ .+.. .+.+.+.+.+ .++.++..+ +.+.+++
T Consensus 84 ~~-~~~~v~-------~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~ 155 (328)
T PRK14618 84 SK-ALRETL-------AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPE 155 (328)
T ss_pred hH-HHHHHH-------HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCC
Confidence 54 566665 446678899999884 5554 5677777655 555554432 4566778
Q ss_pred HhhHHHHHHHHHhhCCcee
Q 044797 129 IDCFTYLFLVKNEFFIDKK 147 (173)
Q Consensus 129 ~~~~~~~~~~~~~~g~~~~ 147 (173)
++..+.++++|+..+...+
T Consensus 156 ~~~~~~v~~ll~~~~~~v~ 174 (328)
T PRK14618 156 PGLARRVQAAFSGPSFRVY 174 (328)
T ss_pred HHHHHHHHHHhCCCcEEEE
Confidence 8889999999999886554
No 38
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.78 E-value=4.9e-18 Score=141.25 Aligned_cols=142 Identities=10% Similarity=0.087 Sum_probs=112.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHH-----------HHcC-------------CceecChhhhhcC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKF-----------FMLG-------------GIRSASPMDAGKD 58 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~ 58 (173)
.+|+|||+|.||..||+.++.+|++|++||++++++++. .+.| +..+.++++ +.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 579999999999999999999999999999999988763 3344 456677765 569
Q ss_pred CCEEEEeccChhhhhhhhcCccchhhcCCCCCEEE-EcCCCCHHHHHHHHHHHhc----CCceeeece-----eeeee--
Q 044797 59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVII-LQSTILPSHMQKLEKTFTG----NLTFYILER-----MFLIS-- 126 (173)
Q Consensus 59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii-~~st~~~~~~~~l~~~l~~----~g~~~v~~~-----~~~~~-- 126 (173)
||+||.|+|++.++++.+++ ++...+++++++. |+||.++. ++++.+.. .|.||++.. +-+++
T Consensus 87 aDlViEav~E~~~vK~~vf~--~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~~LvEvv~g~ 161 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFA--QLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLMKLVEVVSGL 161 (507)
T ss_pred CCEEEEcCcccHHHHHHHHH--HHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccCeeEEEeCCC
Confidence 99999999999999988873 4666778888884 78888876 34554432 488998842 44455
Q ss_pred -cCHhhHHHHHHHHHhhCC-ceeecC
Q 044797 127 -SSIDCFTYLFLVKNEFFI-DKKVNI 150 (173)
Q Consensus 127 -g~~~~~~~~~~~~~~~g~-~~~~g~ 150 (173)
+++++++.+.++++.+|+ .++++.
T Consensus 162 ~Ts~~~~~~~~~l~~~lgk~pv~v~d 187 (507)
T PRK08268 162 ATDPAVADALYALARAWGKTPVRAKD 187 (507)
T ss_pred CCCHHHHHHHHHHHHHcCCceEEecC
Confidence 478899999999999996 456764
No 39
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.78 E-value=1.4e-17 Score=138.46 Aligned_cols=145 Identities=14% Similarity=0.052 Sum_probs=108.6
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-------------------cC-CceecChhhhhcCCC
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-------------------LG-GIRSASPMDAGKDVS 60 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~~d 60 (173)
|.+||+|||+|.||.+||.+|+++|++|++||+++++.+.+.+ .+ +..++++.+++++||
T Consensus 3 ~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD 82 (495)
T PRK07531 3 MIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGAD 82 (495)
T ss_pred CcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCC
Confidence 4579999999999999999999999999999999998765422 12 567778889999999
Q ss_pred EEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece---------eeeeecC---
Q 044797 61 ALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER---------MFLISSS--- 128 (173)
Q Consensus 61 vii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~---------~~~~~g~--- 128 (173)
+|+.|+|++.++++.++ .++.+.++++. ++++||.++.. .++.+.+...+..++..+ +.+++|+
T Consensus 83 ~Vieavpe~~~vk~~l~--~~l~~~~~~~~-iI~SsTsgi~~-s~l~~~~~~~~r~~~~hP~nP~~~~~Lvevv~g~~t~ 158 (495)
T PRK07531 83 WIQESVPERLDLKRRVL--AEIDAAARPDA-LIGSSTSGFLP-SDLQEGMTHPERLFVAHPYNPVYLLPLVELVGGGKTS 158 (495)
T ss_pred EEEEcCcCCHHHHHHHH--HHHHhhCCCCc-EEEEcCCCCCH-HHHHhhcCCcceEEEEecCCCcccCceEEEcCCCCCC
Confidence 99999998877787665 34666677665 45555555443 366676655555444432 4455555
Q ss_pred HhhHHHHHHHHHhhCC-ceeec
Q 044797 129 IDCFTYLFLVKNEFFI-DKKVN 149 (173)
Q Consensus 129 ~~~~~~~~~~~~~~g~-~~~~g 149 (173)
++.++.++++++.+|. .++++
T Consensus 159 ~e~~~~~~~~~~~lG~~~v~~~ 180 (495)
T PRK07531 159 PETIRRAKEILREIGMKPVHIA 180 (495)
T ss_pred HHHHHHHHHHHHHcCCEEEeec
Confidence 6889999999999996 44555
No 40
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.77 E-value=2.3e-17 Score=126.70 Aligned_cols=152 Identities=8% Similarity=0.085 Sum_probs=110.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCe---EEEEcCChHHHHHHHHc--CCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYK---VQAFEISDPLVDKFFML--GGIRSASPMDAGKDVSALVVVISHVDQIDDIFF 77 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~---V~~~d~~~~~~~~~~~~--g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~ 77 (173)
|||+|||+|+||.+++++|.+.|++ +.+|||++++.+.+.+. ++..+.++.++++++|+||+|+| |+++.+++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl- 78 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVL- 78 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence 4899999999999999999998854 57999999998887764 46677888888899999999999 67788887
Q ss_pred CccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee---------ceeeeeecCHhhHHHHHHHHHhhCCceee
Q 044797 78 GHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL---------ERMFLISSSIDCFTYLFLVKNEFFIDKKV 148 (173)
Q Consensus 78 ~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~---------~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 148 (173)
+++ .+.+++++++++.. ...+.+.+.+......+.. .....+.++ .+.++++++.+|...++
T Consensus 79 --~~l--~~~~~~~vis~~ag--~~~~~l~~~~~~~~~~~r~~P~~~~a~~~g~t~~~~~---~~~~~~l~~~lG~~~~~ 149 (258)
T PRK06476 79 --RAL--RFRPGQTVISVIAA--TDRAALLEWIGHDVKLVRAIPLPFVAERKGVTAIYPP---DPFVAALFDALGTAVEC 149 (258)
T ss_pred --HHh--ccCCCCEEEEECCC--CCHHHHHHHhCCCCCEEEECCCChhhhCCCCeEecCC---HHHHHHHHHhcCCcEEE
Confidence 233 25688999987653 3556777776532222211 113333333 25889999999975543
Q ss_pred ----------cCCCchHhHhHHhHhhhHhhhh
Q 044797 149 ----------NISGQEIHWGYLKINYFIRVMT 170 (173)
Q Consensus 149 ----------g~~Gsg~a~~~~~~~~~~~~~~ 170 (173)
+. .++|+|+|. +++++.
T Consensus 150 ~~e~~~d~~~a~-~s~~a~~~~----~~~~~~ 176 (258)
T PRK06476 150 DSEEEYDLLAAA-SALMATYFG----ILETAT 176 (258)
T ss_pred CChHhccceeeh-hccHHHHHH----HHHHHH
Confidence 33 468999987 555544
No 41
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.77 E-value=9.9e-18 Score=130.89 Aligned_cols=142 Identities=13% Similarity=0.096 Sum_probs=105.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-----------cC-------------CceecChhhhhcC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-----------LG-------------GIRSASPMDAGKD 58 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~g-------------~~~~~~~~~~~~~ 58 (173)
+||+|||+|.||.+||..|+.+|++|++||+++++++++.+ .| +..+++.+ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 68999999999999999999999999999999988766432 12 23455554 5789
Q ss_pred CCEEEEeccChhhhhhhhcCccchhhcCCCCCEEE-EcCCCCHHHHHHHHHHHhc----CCceeeece--------eeee
Q 044797 59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVII-LQSTILPSHMQKLEKTFTG----NLTFYILER--------MFLI 125 (173)
Q Consensus 59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii-~~st~~~~~~~~l~~~l~~----~g~~~v~~~--------~~~~ 125 (173)
+|+||+|+|++.++++.++ .++.+.++++++++ ++|+..+. ++.+.+.. .|+||++.. +...
T Consensus 84 aD~Vieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~h~~~p~~~~~~vei~~g~ 158 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIF--AQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGIHFMNPVPVMKLVELIRGI 158 (292)
T ss_pred CCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEeeccCCcccCceEEEeCCC
Confidence 9999999998766666554 46778889999887 45555443 45665532 267777632 2223
Q ss_pred ecCHhhHHHHHHHHHhhCCc-eeecC
Q 044797 126 SSSIDCFTYLFLVKNEFFID-KKVNI 150 (173)
Q Consensus 126 ~g~~~~~~~~~~~~~~~g~~-~~~g~ 150 (173)
++++++++.+.++++.+|+. .+++.
T Consensus 159 ~t~~~~~~~~~~~~~~~gk~~v~~~d 184 (292)
T PRK07530 159 ATDEATFEAAKEFVTKLGKTITVAED 184 (292)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEecC
Confidence 57789999999999999974 44443
No 42
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.76 E-value=2.9e-17 Score=127.88 Aligned_cols=143 Identities=14% Similarity=0.130 Sum_probs=108.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHH-----------HHHcCC-------------ceecChhhhhcC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDK-----------FFMLGG-------------IRSASPMDAGKD 58 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~-----------~~~~g~-------------~~~~~~~~~~~~ 58 (173)
.||+|||+|.||..||..++.+|++|++||++++.+++ +.+.|. +.++++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 58999999999999999999999999999999998766 333332 256666 55799
Q ss_pred CCEEEEeccChhhhhhhhcCccchhhcC-CCCCEEEEcCCCCHHHHHHHHHHHhcC--Cceeeece--------eeeeec
Q 044797 59 VSALVVVISHVDQIDDIFFGHEGVLKGL-QKGAVIILQSTILPSHMQKLEKTFTGN--LTFYILER--------MFLISS 127 (173)
Q Consensus 59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l-~~g~~ii~~st~~~~~~~~l~~~l~~~--g~~~v~~~--------~~~~~g 127 (173)
||+||.|+|++.++++.+++ .+.+.+ ++++++.+.|+..|.+.........++ |.||+..+ +....+
T Consensus 85 ~d~ViEav~E~~~~K~~l~~--~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lvElv~~~~T 162 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFA--ELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLVELVPTLVT 162 (286)
T ss_pred CCEEEEecccCHHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceEEEeCCCCC
Confidence 99999999999999888873 466666 889999988877665543332222334 77887743 445577
Q ss_pred CHhhHHHHHHHHH-hhCCc-eee
Q 044797 128 SIDCFTYLFLVKN-EFFID-KKV 148 (173)
Q Consensus 128 ~~~~~~~~~~~~~-~~g~~-~~~ 148 (173)
++++.+.+.+++. .+|+. +.+
T Consensus 163 ~~~~~~~~~~~~~~~lgk~pv~v 185 (286)
T PRK07819 163 SEATVARAEEFASDVLGKQVVRA 185 (286)
T ss_pred CHHHHHHHHHHHHHhCCCCceEe
Confidence 8899999999977 59964 444
No 43
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.76 E-value=3.7e-17 Score=127.81 Aligned_cols=146 Identities=14% Similarity=0.173 Sum_probs=104.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHH-----------HHHcC------------CceecChhhhhcCC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDK-----------FFMLG------------GIRSASPMDAGKDV 59 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~-----------~~~~g------------~~~~~~~~~~~~~~ 59 (173)
+||+|||+|.||.+||+.|+++|++|++||+++++++. +.+.| .....+..+.+++|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 68999999999999999999999999999999988753 22222 12233334668999
Q ss_pred CEEEEeccChhhhhhhhcCccchhhcCCCCCEEE-EcCCCCHHHHHHHHHHH-hcCCceeeece-----eeeee---cCH
Q 044797 60 SALVVVISHVDQIDDIFFGHEGVLKGLQKGAVII-LQSTILPSHMQKLEKTF-TGNLTFYILER-----MFLIS---SSI 129 (173)
Q Consensus 60 dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii-~~st~~~~~~~~l~~~l-~~~g~~~v~~~-----~~~~~---g~~ 129 (173)
|+||.|+|++.++++.++ .++.+.++++++|+ ++|+.++....+..+.. +-.++||++.+ +.++. +++
T Consensus 85 D~Vieav~e~~~~k~~v~--~~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~~lveiv~g~~t~~ 162 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLF--SELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIMKLVEIIRGADTSD 162 (295)
T ss_pred CEEEEcCccCHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccCceEEEeCCCCCCH
Confidence 999999998888877776 34777788888886 56676665443332211 11366776654 33333 467
Q ss_pred hhHHHHHHHHHhhCCce-eecC
Q 044797 130 DCFTYLFLVKNEFFIDK-KVNI 150 (173)
Q Consensus 130 ~~~~~~~~~~~~~g~~~-~~g~ 150 (173)
+..+.++++++.+|... +++.
T Consensus 163 e~~~~~~~ll~~lG~~~~~~~d 184 (295)
T PLN02545 163 EVFDATKALAERFGKTVVCSQD 184 (295)
T ss_pred HHHHHHHHHHHHcCCeeEEecC
Confidence 88999999999999754 4443
No 44
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.76 E-value=2e-17 Score=137.39 Aligned_cols=142 Identities=11% Similarity=0.102 Sum_probs=108.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHH-----------HHcC-------------CceecChhhhhcC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKF-----------FMLG-------------GIRSASPMDAGKD 58 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~-----------~~~g-------------~~~~~~~~~~~~~ 58 (173)
+||+|||+|.||+.||..++++|++|++||++++++++. .+.| ++.++++++ +.+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 689999999999999999999999999999999988653 2233 335667755 569
Q ss_pred CCEEEEeccChhhhhhhhcCccchhhcCCCCCEEE-EcCCCCHHHHHHHHHHHh----cCCceeeece-----eeeeec-
Q 044797 59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVII-LQSTILPSHMQKLEKTFT----GNLTFYILER-----MFLISS- 127 (173)
Q Consensus 59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii-~~st~~~~~~~~l~~~l~----~~g~~~v~~~-----~~~~~g- 127 (173)
||+||.|+|++.++++.+++ ++.+.++++.++. ++|+.++. ++.+.+. ..|.||++.. +-+++|
T Consensus 85 aDlVIEav~E~~~vK~~vf~--~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~~G~HFf~Papv~~LvEvv~g~ 159 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFA--QLEELCPADTIIASNTSSLSIT---AIAAGLARPERVAGLHFFNPAPVMALVEVVSGL 159 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHH--HHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccceEEEeccCccccCceEEEeCCC
Confidence 99999999998899888873 4666777777665 45555554 3444443 3588998843 556677
Q ss_pred --CHhhHHHHHHHHHhhCC-ceeecC
Q 044797 128 --SIDCFTYLFLVKNEFFI-DKKVNI 150 (173)
Q Consensus 128 --~~~~~~~~~~~~~~~g~-~~~~g~ 150 (173)
++++++.+.++++.+|+ .++++.
T Consensus 160 ~Ts~e~~~~~~~l~~~lgk~pv~v~d 185 (503)
T TIGR02279 160 ATAAEVAEQLYETALAWGKQPVHCHS 185 (503)
T ss_pred CCCHHHHHHHHHHHHHcCCeeeEeCC
Confidence 78999999999999996 456664
No 45
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.76 E-value=4.7e-17 Score=141.19 Aligned_cols=163 Identities=12% Similarity=0.142 Sum_probs=126.3
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHHcCCc--eecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFMLGGI--RSASPMDAGKDVSALVVVISHVDQIDDIF 76 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~g~~--~~~~~~~~~~~~dvii~~v~~~~~~~~v~ 76 (173)
|..||+|||+|+||.++++.|.+.| ++|++||+++++.+.+.+.|+. ...+..++++++|+||+|+| ++.+++++
T Consensus 2 ~~~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp-~~~~~~vl 80 (735)
T PRK14806 2 LFGRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVP-VLAMEKVL 80 (735)
T ss_pred CCcEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCC-HHHHHHHH
Confidence 4579999999999999999999998 4899999999998887777764 34567778899999999999 56778887
Q ss_pred cCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec-e--------------------eeeee----cCHhh
Q 044797 77 FGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE-R--------------------MFLIS----SSIDC 131 (173)
Q Consensus 77 ~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~-~--------------------~~~~~----g~~~~ 131 (173)
+++.+.++++.+|++.++.+....+.+.+.+....++++.. + .+.+. ++++.
T Consensus 81 ---~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~ 157 (735)
T PRK14806 81 ---ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAA 157 (735)
T ss_pred ---HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHH
Confidence 46777888899999999988777888888775444555321 1 11222 34566
Q ss_pred HHHHHHHHHhhCCce-e---------ecCCCchHh-HhHHhHhhhHhhhhc
Q 044797 132 FTYLFLVKNEFFIDK-K---------VNISGQEIH-WGYLKINYFIRVMTD 171 (173)
Q Consensus 132 ~~~~~~~~~~~g~~~-~---------~g~~Gsg~a-~~~~~~~~~~~~~~~ 171 (173)
.+.++++++.+|... + ++.+|++|+ |.|. ++++|.+
T Consensus 158 ~~~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~~~----l~~~l~~ 204 (735)
T PRK14806 158 LARVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLAFS----LVDQLAN 204 (735)
T ss_pred HHHHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHHHH----HHHHHhh
Confidence 788999999999633 2 478999999 7887 7777655
No 46
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.76 E-value=6.5e-17 Score=125.17 Aligned_cols=143 Identities=15% Similarity=0.067 Sum_probs=110.8
Q ss_pred CeEEEEeCChh--------------------hHHHHHHHHHCCCeEEEEcCChHHH-----HHHHHcCCceecChhhhhc
Q 044797 3 SKVGFVGLDEY--------------------SVDMAASLIRSGYKVQAFEISDPLV-----DKFFMLGGIRSASPMDAGK 57 (173)
Q Consensus 3 ~~IgiiG~G~m--------------------G~~ia~~l~~~g~~V~~~d~~~~~~-----~~~~~~g~~~~~~~~~~~~ 57 (173)
|||.|.|+|+- |++||++|+++||+|++|||++++. +.+.+.|+..++++.++++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa 80 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK 80 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh
Confidence 58999999974 8899999999999999999987654 3577789999999999999
Q ss_pred CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHH-Hh--cC--Cc---------------ee
Q 044797 58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKT-FT--GN--LT---------------FY 117 (173)
Q Consensus 58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~-l~--~~--g~---------------~~ 117 (173)
++|+||+|+|++.++++++ +++.+++++|+++||+||++|....+.-+. |+ +. |+ +|
T Consensus 81 ~ADVVIL~LPd~aaV~eVl---~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~~~~ 157 (341)
T TIGR01724 81 HGEIHVLFTPFGKGTFSIA---RTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQHGHY 157 (341)
T ss_pred CCCEEEEecCCHHHHHHHH---HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCCcee
Confidence 9999999999999899997 568889999999999999999987655544 33 22 22 12
Q ss_pred eeceeeeee---cCHhhHHHHHHHHHhhCCceee
Q 044797 118 ILERMFLIS---SSIDCFTYLFLVKNEFFIDKKV 148 (173)
Q Consensus 118 v~~~~~~~~---g~~~~~~~~~~~~~~~g~~~~~ 148 (173)
+-.+....+ .+++..+++..+.+..+...|+
T Consensus 158 ~~~~~~~~~~~~A~ee~i~~~~el~~~~~~~~~~ 191 (341)
T TIGR01724 158 VIGGKPTAGKEMATEEQISKCVELAKSTGKKAYV 191 (341)
T ss_pred eeccccccccccCCHHHHHHHHHHHHHhCCCeee
Confidence 222212221 2356677788888888876553
No 47
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.74 E-value=7.1e-17 Score=126.80 Aligned_cols=158 Identities=9% Similarity=-0.049 Sum_probs=110.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcC-ChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEI-SDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~-~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
++|+|||+|+||++++++|..+|++|+++++ ++++.+.+.+.|+... +..++++++|+|++++|+..+...+. ++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~---~e 79 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYE---AE 79 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHH---HH
Confidence 6899999999999999999999998877654 4556666666787654 58888999999999999543555444 45
Q ss_pred hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC-Cceee---------------eceeeeee-----cCHhhHHHHHHHHH
Q 044797 82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGN-LTFYI---------------LERMFLIS-----SSIDCFTYLFLVKN 140 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~-g~~~v---------------~~~~~~~~-----g~~~~~~~~~~~~~ 140 (173)
+.+.++++. +++.+.+.. ...+...+... .+-.+ ..++..+. .+.+..+.+..+++
T Consensus 80 i~~~l~~g~-iVs~aaG~~--i~~~~~~~~~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~ 156 (314)
T TIGR00465 80 IQPLLKEGK-TLGFSHGFN--IHFVQIVPPKDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAK 156 (314)
T ss_pred HHhhCCCCc-EEEEeCCcc--HhhccccCCCCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHH
Confidence 777787776 666655432 34445555321 12111 11232331 23456788999999
Q ss_pred hhCCc-------e---e---------ecCCCchHhHhHHhHhhhHhhhhc
Q 044797 141 EFFID-------K---K---------VNISGQEIHWGYLKINYFIRVMTD 171 (173)
Q Consensus 141 ~~g~~-------~---~---------~g~~Gsg~a~~~~~~~~~~~~~~~ 171 (173)
.+|.. . + ++.+||+|+|+|+ ++|+|..
T Consensus 157 ~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~----~~ealv~ 202 (314)
T TIGR00465 157 AIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKA----GFDTLVE 202 (314)
T ss_pred HcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHH----HHHHHHH
Confidence 99976 2 2 4789999999998 7777753
No 48
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.73 E-value=1.5e-16 Score=123.52 Aligned_cols=149 Identities=11% Similarity=0.138 Sum_probs=110.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCc-eecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGI-RSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
|||+|||+|.||..++..|.++|++|++||+++++.+.+.+.|.. ...+..+.++++|+||+|+| +..+.+++ ++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp-~~~~~~~~---~~ 76 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALP-IGLLLPPS---EQ 76 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCC-HHHHHHHH---HH
Confidence 489999999999999999999999999999999998888777643 23233356789999999999 45566666 56
Q ss_pred hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee-ce--------------------eeee----ecCHhhHHHHH
Q 044797 82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL-ER--------------------MFLI----SSSIDCFTYLF 136 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~-~~--------------------~~~~----~g~~~~~~~~~ 136 (173)
+.+.++++.+|+|+++.++...+.+.+... +|+. .+ .+.+ .++++..+.++
T Consensus 77 l~~~l~~~~ii~d~~Svk~~~~~~~~~~~~----~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~ 152 (279)
T PRK07417 77 LIPALPPEAIVTDVGSVKAPIVEAWEKLHP----RFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVE 152 (279)
T ss_pred HHHhCCCCcEEEeCcchHHHHHHHHHHhhC----CceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHH
Confidence 778888999999999988776665555432 2332 11 1111 23567788999
Q ss_pred HHHHhhCCce-ee---------cCCCchHhHhH
Q 044797 137 LVKNEFFIDK-KV---------NISGQEIHWGY 159 (173)
Q Consensus 137 ~~~~~~g~~~-~~---------g~~Gsg~a~~~ 159 (173)
++++.+|... ++ ...+..|+|..
T Consensus 153 ~l~~~lG~~~v~~~~~~hD~~~a~~shlp~~~a 185 (279)
T PRK07417 153 ELAVSLGSKIYTADPEEHDRAVALISHLPVMVS 185 (279)
T ss_pred HHHHHcCCEEEEcCHHHHHHHHHHHcchHHHHH
Confidence 9999999643 44 45667777654
No 49
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.73 E-value=3.1e-17 Score=127.40 Aligned_cols=157 Identities=17% Similarity=0.242 Sum_probs=133.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc---C--CceecChhhhh---cCCCEEEEeccChhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML---G--GIRSASPMDAG---KDVSALVVVISHVDQIDD 74 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~---g--~~~~~~~~~~~---~~~dvii~~v~~~~~~~~ 74 (173)
+.||.||++.||+.++.+...+|+.|.+|||+.++.+.+.+. | +....|+++.+ +...+|++.++....++.
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 589999999999999999999999999999999999887654 2 34566777764 568899999998888888
Q ss_pred hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece------------eeeeecCHhhHHHHHHHHHhh
Q 044797 75 IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER------------MFLISSSIDCFTYLFLVKNEF 142 (173)
Q Consensus 75 v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~------------~~~~~g~~~~~~~~~~~~~~~ 142 (173)
.+ +++.++|.+|++|||-++....++.+..+.+.+.|+.|+..+ ..|.+|+++++..++++|..+
T Consensus 87 ~I---~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPSlMpGg~~~Awp~ik~ifq~i 163 (487)
T KOG2653|consen 87 FI---EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPSLMPGGSKEAWPHIKDIFQKI 163 (487)
T ss_pred HH---HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCccCCCCChHHHHHHHHHHHHH
Confidence 88 689999999999999998877777777888888999998642 888999999999999998777
Q ss_pred C--------CceeecCCCchHhHhHHhHh
Q 044797 143 F--------IDKKVNISGQEIHWGYLKIN 163 (173)
Q Consensus 143 g--------~~~~~g~~Gsg~a~~~~~~~ 163 (173)
. +..|+|..|+| +|++++=|
T Consensus 164 aakv~~~epCc~wvG~~GaG-hfVKMVHN 191 (487)
T KOG2653|consen 164 AAKVSDGEPCCDWVGEGGAG-HFVKMVHN 191 (487)
T ss_pred HHHhcCCCCCeeeecCCCCc-cchhhhcc
Confidence 4 13689999999 78887644
No 50
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.72 E-value=2.4e-17 Score=108.18 Aligned_cols=89 Identities=19% Similarity=0.326 Sum_probs=75.5
Q ss_pred eEEEEeCChhhHHHHHHHHHCC---CeEE-EEcCChHHHHHHHHc-CCceec-ChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797 4 KVGFVGLDEYSVDMAASLIRSG---YKVQ-AFEISDPLVDKFFML-GGIRSA-SPMDAGKDVSALVVVISHVDQIDDIFF 77 (173)
Q Consensus 4 ~IgiiG~G~mG~~ia~~l~~~g---~~V~-~~d~~~~~~~~~~~~-g~~~~~-~~~~~~~~~dvii~~v~~~~~~~~v~~ 77 (173)
||+|||+|+||++++++|.++| ++|. +++|++++.+++.+. +..... +..++++++|+||+|+| |+++.+++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~-p~~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVK-PQQLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S--GGGHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEEC-HHHHHHHH-
Confidence 7999999999999999999999 8998 459999999888665 666555 78999999999999999 77888888
Q ss_pred CccchhhcCCCCCEEEEcCC
Q 044797 78 GHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 78 ~~~~i~~~l~~g~~ii~~st 97 (173)
+++ +...++++++|+++
T Consensus 79 --~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 79 --SEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp --HHH-HHHHTTSEEEEEST
T ss_pred --HHH-hhccCCCEEEEeCC
Confidence 456 67789999999865
No 51
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.72 E-value=3.5e-16 Score=122.15 Aligned_cols=161 Identities=12% Similarity=0.171 Sum_probs=112.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH--------------cCC-------------ceecChhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM--------------LGG-------------IRSASPMDA 55 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~--------------~g~-------------~~~~~~~~~ 55 (173)
.||+|||+|.||.++|..|+.+|++|++||++++++++..+ .+. ...++. +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 68999999999999999999999999999999988764321 121 233344 56
Q ss_pred hcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece-----eeee-
Q 044797 56 GKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER-----MFLI- 125 (173)
Q Consensus 56 ~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~-----~~~~- 125 (173)
++++|+||.|+|++..++..++ .++.+.++++++++++++.. ...++++.+.. .|.||+... +-.+
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~--~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~ig~hf~~P~~~~~~vEv~~ 158 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVF--AELERNVSPETIIASNTSGI--MIAEIATALERKDRFIGMHWFNPAPVMKLIEVVR 158 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccEEEEecCCCcccCccEEEeC
Confidence 7899999999997765555554 35777788888887665543 34566666643 266666532 1122
Q ss_pred --ecCHhhHHHHHHHHHhhCC-ceeecCCCchHhHhHHhHhhhHhhh
Q 044797 126 --SSSIDCFTYLFLVKNEFFI-DKKVNISGQEIHWGYLKINYFIRVM 169 (173)
Q Consensus 126 --~g~~~~~~~~~~~~~~~g~-~~~~g~~Gsg~a~~~~~~~~~~~~~ 169 (173)
..++++++.+.++++.+|+ +.++++.+...+ -.+..|++-|++
T Consensus 159 g~~T~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~-nRl~~~~~~ea~ 204 (291)
T PRK06035 159 AALTSEETFNTTVELSKKIGKIPIEVADVPGFFT-TRFIEGWLLEAI 204 (291)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEeCCCCCeeH-HHHHHHHHHHHH
Confidence 3357889999999999996 456776555544 345566666664
No 52
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.72 E-value=7e-16 Score=121.28 Aligned_cols=154 Identities=12% Similarity=0.140 Sum_probs=117.4
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHHHcCC--ceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKFFMLGG--IRSASPMDAGKDVSALVVVISHVDQIDDIFF 77 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~--~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~ 77 (173)
.++|+|||+|.||..+++.|.+.|+ +|++|||++++.+.+.+.|. ....+..++++++|+||+|+|. .....++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~-~~~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPV-GASGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCH-HHHHHHH-
Confidence 4799999999999999999999985 89999999998888877764 2445677788999999999995 4556666
Q ss_pred CccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec-e--------------------eeee----ecCHhhH
Q 044797 78 GHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE-R--------------------MFLI----SSSIDCF 132 (173)
Q Consensus 78 ~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~-~--------------------~~~~----~g~~~~~ 132 (173)
+++.+.++++.+++++++.+....+.+.+.+. .+++++.. + .+.+ +++++..
T Consensus 84 --~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~-~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~ 160 (307)
T PRK07502 84 --AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLP-EGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAV 160 (307)
T ss_pred --HHHHhhCCCCCEEEeCccchHHHHHHHHHhCC-CCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHH
Confidence 45667788999999998888777776666553 35555542 1 1112 3456678
Q ss_pred HHHHHHHHhhCCce-e---------ecCCCchHhHhHH
Q 044797 133 TYLFLVKNEFFIDK-K---------VNISGQEIHWGYL 160 (173)
Q Consensus 133 ~~~~~~~~~~g~~~-~---------~g~~Gsg~a~~~~ 160 (173)
+.++++++.+|... + ++..++.|+|...
T Consensus 161 ~~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~ 198 (307)
T PRK07502 161 ARLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAY 198 (307)
T ss_pred HHHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHH
Confidence 88999999999643 2 4678999998655
No 53
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.71 E-value=1.3e-16 Score=119.28 Aligned_cols=160 Identities=16% Similarity=0.260 Sum_probs=119.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC----eEEEEcCChHHHHH-HHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY----KVQAFEISDPLVDK-FFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFF 77 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~----~V~~~d~~~~~~~~-~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~ 77 (173)
|++||||.|+|..++++++.+.|. ++..+-.+...... +++.|+..+.+..+.++.+|+++++++ |+.+..++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svK-p~~i~~vl- 78 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVK-PQVIESVL- 78 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeec-chhHHHHh-
Confidence 589999999999999999999984 56666664444444 677788887777889999999999999 78888888
Q ss_pred CccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc--CCceeee-------ce--eeeeec--CHhhHHHHHHHHHhhCC
Q 044797 78 GHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG--NLTFYIL-------ER--MFLISS--SIDCFTYLFLVKNEFFI 144 (173)
Q Consensus 78 ~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~--~g~~~v~-------~~--~~~~~g--~~~~~~~~~~~~~~~g~ 144 (173)
.++.+.+..++++++...+. +...+++.+.. +-++... .. ++..+. ..+..+.++.+++..|.
T Consensus 79 --s~~~~~~~~~~iivS~aaG~--tl~~l~~~l~~~~rviRvmpNtp~~v~eg~sv~~~g~~~~~~D~~l~~~ll~~vG~ 154 (267)
T KOG3124|consen 79 --SEIKPKVSKGKIIVSVAAGK--TLSSLESKLSPPTRVIRVMPNTPSVVGEGASVYAIGCHATNEDLELVEELLSAVGL 154 (267)
T ss_pred --hcCccccccceEEEEEeecc--cHHHHHHhcCCCCceEEecCCChhhhhcCcEEEeeCCCcchhhHHHHHHHHHhcCc
Confidence 45555577889999987665 44566666651 2233221 11 222222 24566889999999996
Q ss_pred c---------eeecCCCchHhHhHHhHhhhHhhhhcC
Q 044797 145 D---------KKVNISGQEIHWGYLKINYFIRVMTDG 172 (173)
Q Consensus 145 ~---------~~~g~~Gsg~a~~~~~~~~~~~~~~~~ 172 (173)
. .++|.+||||||+|+ +||+|+||
T Consensus 155 ~~evpE~~iDavTgLsGSgPAy~f~----~ieaLadG 187 (267)
T KOG3124|consen 155 CEEVPEKCIDAVTGLSGSGPAYVFV----AIEALADG 187 (267)
T ss_pred ceeCcHHhhhHHhhccCCcHHHHHH----HHHHHhcc
Confidence 3 357999999999999 99999997
No 54
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.71 E-value=8.2e-16 Score=121.03 Aligned_cols=146 Identities=11% Similarity=0.109 Sum_probs=101.5
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-----C--------------CceecChhhhhcCCCEE
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-----G--------------GIRSASPMDAGKDVSAL 62 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g--------------~~~~~~~~~~~~~~dvi 62 (173)
+++|+|||+|.||.+++..|+++|++|++||+++++.+++.+. + +..+++..++++++|+|
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlV 83 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLV 83 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEE
Confidence 4689999999999999999999999999999999887765431 1 23456777888999999
Q ss_pred EEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece-----eeeeec---CHh
Q 044797 63 VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER-----MFLISS---SID 130 (173)
Q Consensus 63 i~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~-----~~~~~g---~~~ 130 (173)
|+|+|++.+....++ .++.+.++++.+|++.+++.+ ..++.+.+.. .+.++...+ +.++.+ +++
T Consensus 84 i~av~~~~~~~~~v~--~~l~~~~~~~~ii~s~tsg~~--~~~l~~~~~~~~~~ig~h~~~p~~~~~l~~i~~g~~t~~~ 159 (311)
T PRK06130 84 IEAVPEKLELKRDVF--ARLDGLCDPDTIFATNTSGLP--ITAIAQAVTRPERFVGTHFFTPADVIPLVEVVRGDKTSPQ 159 (311)
T ss_pred EEeccCcHHHHHHHH--HHHHHhCCCCcEEEECCCCCC--HHHHHhhcCCcccEEEEccCCCCccCceEEEeCCCCCCHH
Confidence 999997654443332 345556666666654444322 3466666643 144444332 333444 467
Q ss_pred hHHHHHHHHHhhCC-ceeecCC
Q 044797 131 CFTYLFLVKNEFFI-DKKVNIS 151 (173)
Q Consensus 131 ~~~~~~~~~~~~g~-~~~~g~~ 151 (173)
..+.++++++.+|. ..+++..
T Consensus 160 ~~~~v~~l~~~~G~~~v~~~~d 181 (311)
T PRK06130 160 TVATTMALLRSIGKRPVLVKKD 181 (311)
T ss_pred HHHHHHHHHHHcCCEEEEEcCC
Confidence 89999999999996 4556543
No 55
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.70 E-value=7.6e-16 Score=121.20 Aligned_cols=142 Identities=10% Similarity=-0.041 Sum_probs=105.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-----------c---------CCceecChhhhhcCCCEE
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-----------L---------GGIRSASPMDAGKDVSAL 62 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~---------g~~~~~~~~~~~~~~dvi 62 (173)
+||+|||+|.||..||..++.+|++|++||++++..+++.+ . .+..++++++++++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 68999999999999999999999999999999887654322 1 124566788889999999
Q ss_pred EEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece--------eeeeecCHh
Q 044797 63 VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER--------MFLISSSID 130 (173)
Q Consensus 63 i~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~--------~~~~~g~~~ 130 (173)
+.|+|++.++++.++ .++.+.++++++ +.+||++ ....++.+.+.. .+.||++.+ +.....+++
T Consensus 88 iEavpE~l~vK~~lf--~~l~~~~~~~aI-laSnTS~-l~~s~la~~~~~p~R~~g~HffnP~~~~pLVEVv~g~~T~~e 163 (321)
T PRK07066 88 QESAPEREALKLELH--ERISRAAKPDAI-IASSTSG-LLPTDFYARATHPERCVVGHPFNPVYLLPLVEVLGGERTAPE 163 (321)
T ss_pred EECCcCCHHHHHHHH--HHHHHhCCCCeE-EEECCCc-cCHHHHHHhcCCcccEEEEecCCccccCceEEEeCCCCCCHH
Confidence 999999888988887 468888888884 4444432 234556665543 255666554 222245678
Q ss_pred hHHHHHHHHHhhCC-ceee
Q 044797 131 CFTYLFLVKNEFFI-DKKV 148 (173)
Q Consensus 131 ~~~~~~~~~~~~g~-~~~~ 148 (173)
+.+.+..++..+|+ .+.+
T Consensus 164 ~~~~~~~f~~~lGk~pV~v 182 (321)
T PRK07066 164 AVDAAMGIYRALGMRPLHV 182 (321)
T ss_pred HHHHHHHHHHHcCCEeEec
Confidence 88999999999995 3444
No 56
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.70 E-value=7.2e-16 Score=120.14 Aligned_cols=143 Identities=16% Similarity=0.177 Sum_probs=101.5
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-------------------------CCceecChhhhh
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-------------------------GGIRSASPMDAG 56 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-------------------------g~~~~~~~~~~~ 56 (173)
++||+|||+|.||.++|..++.+|++|++||+++++++++.+. .+..+++.++++
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~ 82 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAV 82 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHh
Confidence 3689999999999999999999999999999998876554321 233567788889
Q ss_pred cCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEc-CCCCHHHHHHHHHHHhc----CCceeeece-----eee--
Q 044797 57 KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQ-STILPSHMQKLEKTFTG----NLTFYILER-----MFL-- 124 (173)
Q Consensus 57 ~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~-st~~~~~~~~l~~~l~~----~g~~~v~~~-----~~~-- 124 (173)
+++|+||.|+|++.+++..++ +++.+.++++++|.+. |+..+. ++.+.+.. .|.|+.... +-+
T Consensus 83 ~~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~sntSt~~~~---~~~~~~~~~~r~vg~Hf~~p~~~~~lvevv~ 157 (287)
T PRK08293 83 KDADLVIEAVPEDPEIKGDFY--EELAKVAPEKTIFATNSSTLLPS---QFAEATGRPEKFLALHFANEIWKNNTAEIMG 157 (287)
T ss_pred cCCCEEEEeccCCHHHHHHHH--HHHHhhCCCCCEEEECcccCCHH---HHHhhcCCcccEEEEcCCCCCCcCCeEEEeC
Confidence 999999999997655554443 4577788888888544 444443 33444322 244444332 222
Q ss_pred -eecCHhhHHHHHHHHHhhCCc-eeec
Q 044797 125 -ISSSIDCFTYLFLVKNEFFID-KKVN 149 (173)
Q Consensus 125 -~~g~~~~~~~~~~~~~~~g~~-~~~g 149 (173)
...++++.+.+..++..+|+. +.+.
T Consensus 158 ~~~t~~~~~~~~~~~~~~~Gk~pv~v~ 184 (287)
T PRK08293 158 HPGTDPEVFDTVVAFAKAIGMVPIVLK 184 (287)
T ss_pred CCCCCHHHHHHHHHHHHHcCCeEEEec
Confidence 346678899999999999964 3443
No 57
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.69 E-value=1.4e-15 Score=117.82 Aligned_cols=143 Identities=16% Similarity=0.224 Sum_probs=104.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHHHcCCc-eecChhhhhcCCCEEEEeccChhhhhhhhcCc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKFFMLGGI-RSASPMDAGKDVSALVVVISHVDQIDDIFFGH 79 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~ 79 (173)
|||+|||+|.||.+++++|.+.|+ +|++|||++++.+.+.+.|.. ...+..++. ++|+||+|+| +..+.+++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp-~~~~~~~~--- 75 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIP-VDAIIEIL--- 75 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCc-HHHHHHHH---
Confidence 489999999999999999999996 789999999998888777753 345666655 4999999999 45566676
Q ss_pred cchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee---------------------ceeeeee----cCHhhHHH
Q 044797 80 EGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL---------------------ERMFLIS----SSIDCFTY 134 (173)
Q Consensus 80 ~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~---------------------~~~~~~~----g~~~~~~~ 134 (173)
.++.+ ++++++|+|.++..+...+.+.+.. +..|+. ...+.+. ++++..+.
T Consensus 76 ~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~~---~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~ 151 (275)
T PRK08507 76 PKLLD-IKENTTIIDLGSTKAKIIESVPKHI---RKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQER 151 (275)
T ss_pred HHHhc-cCCCCEEEECccchHHHHHHHHHhc---CCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHH
Confidence 46777 8899999999887776666555442 112221 1123333 34567789
Q ss_pred HHHHHHhhCC-ceeecCCCch
Q 044797 135 LFLVKNEFFI-DKKVNISGQE 154 (173)
Q Consensus 135 ~~~~~~~~g~-~~~~g~~Gsg 154 (173)
++++++.+|. +.++++.+..
T Consensus 152 v~~l~~~~G~~~~~~~~~~hD 172 (275)
T PRK08507 152 AKEIFSGLGMRIVYMDAKEHD 172 (275)
T ss_pred HHHHHHHhCCEEEEeCHHHHH
Confidence 9999999994 5666655444
No 58
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.69 E-value=2.9e-15 Score=122.80 Aligned_cols=153 Identities=14% Similarity=0.178 Sum_probs=117.1
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHH-HHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKF-FMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE 80 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~-~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~ 80 (173)
|+|+||| +|.||.++++.|.++|++|++|+|++++...+ .+.|+....+..++++++|+||+|+| +..+.+++ +
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp-~~~~~~vl---~ 76 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVP-INVTEDVI---K 76 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecC-HHHHHHHH---H
Confidence 4899997 89999999999999999999999998876444 34577767778888999999999999 45667777 5
Q ss_pred chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec-e-------------eeeee---cCHhhHHHHHHHHHhhC
Q 044797 81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE-R-------------MFLIS---SSIDCFTYLFLVKNEFF 143 (173)
Q Consensus 81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~-~-------------~~~~~---g~~~~~~~~~~~~~~~g 143 (173)
++.+.++++++++|++++.+...+.+.+.+. .+.+|+.. + .++.. .+++..+.++++++.+|
T Consensus 77 ~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G 155 (437)
T PRK08655 77 EVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEG 155 (437)
T ss_pred HHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcC
Confidence 6778899999999999988888888887764 35555543 1 22222 23567788999999999
Q ss_pred Ccee----------ecCCCchHhHhHH
Q 044797 144 IDKK----------VNISGQEIHWGYL 160 (173)
Q Consensus 144 ~~~~----------~g~~Gsg~a~~~~ 160 (173)
...+ ++.....|++.+.
T Consensus 156 ~~v~~~~~e~HD~~~a~vs~lph~~a~ 182 (437)
T PRK08655 156 ARVIVTSPEEHDRIMSVVQGLTHFAYI 182 (437)
T ss_pred CEEEECCHHHHHHHHHHHHHHHHHHHH
Confidence 6433 2445566776654
No 59
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.68 E-value=3.6e-15 Score=119.58 Aligned_cols=153 Identities=15% Similarity=0.123 Sum_probs=114.7
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCc----eecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGI----RSASPMDAGKDVSALVVVISHVDQIDDIFFG 78 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~----~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~ 78 (173)
++|+|||+|.||.++++.|.++|+++.+|++++++.+.....+.. ..++..+++++||+||+|+| +..+..++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP-~~~~~~vl-- 77 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVP-VDATAALL-- 77 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCC-HHHHHHHH--
Confidence 479999999999999999999999999999887765544433322 23456778899999999999 45677787
Q ss_pred ccchhh-cCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec-e--------------------eeeee----cCHhhH
Q 044797 79 HEGVLK-GLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE-R--------------------MFLIS----SSIDCF 132 (173)
Q Consensus 79 ~~~i~~-~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~-~--------------------~~~~~----g~~~~~ 132 (173)
+++.+ .++++.++.|.++++....+.+.+.+ ..+.+|+.. + .+.+. .+++.+
T Consensus 78 -~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~-~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~ 155 (359)
T PRK06545 78 -AELADLELKPGVIVTDVGSVKGAILAEAEALL-GDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAV 155 (359)
T ss_pred -HHHhhcCCCCCcEEEeCccccHHHHHHHHHhc-CCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHH
Confidence 45665 47889999999999887777776663 345556542 1 12333 356778
Q ss_pred HHHHHHHHhhCCce-e---------ecCCCchHhHhHH
Q 044797 133 TYLFLVKNEFFIDK-K---------VNISGQEIHWGYL 160 (173)
Q Consensus 133 ~~~~~~~~~~g~~~-~---------~g~~Gsg~a~~~~ 160 (173)
+.++.+++.+|... + ++.++++|+|.+.
T Consensus 156 ~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~ 193 (359)
T PRK06545 156 AELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILAS 193 (359)
T ss_pred HHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHH
Confidence 89999999999643 2 4789999998764
No 60
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.66 E-value=2.6e-15 Score=118.13 Aligned_cols=127 Identities=11% Similarity=0.149 Sum_probs=95.9
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
|||+|||+|.||+++|+.|.++|++|++|+|+++ .++.++++++|+|++++|+ .++++++ +++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~---~~l 67 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVA---EQV 67 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHH---HHH
Confidence 6999999999999999999999999999999863 4577888899999999996 5788887 456
Q ss_pred hh-cCCCCCEEEEcCC-CCHHHHHHHHHHHh----cCCceeeec-------------eeeeeecCHhhHHHHHHHHHhhC
Q 044797 83 LK-GLQKGAVIILQST-ILPSHMQKLEKTFT----GNLTFYILE-------------RMFLISSSIDCFTYLFLVKNEFF 143 (173)
Q Consensus 83 ~~-~l~~g~~ii~~st-~~~~~~~~l~~~l~----~~g~~~v~~-------------~~~~~~g~~~~~~~~~~~~~~~g 143 (173)
.+ .++++++++++++ ..|.+.+.+.+.+. ...+..+.. .+++.+++.+..+.++++++..+
T Consensus 68 ~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~ 147 (308)
T PRK14619 68 QALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSER 147 (308)
T ss_pred HHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCc
Confidence 55 3678899999876 55554444444333 223322221 15566778889999999999887
Q ss_pred Cce
Q 044797 144 IDK 146 (173)
Q Consensus 144 ~~~ 146 (173)
...
T Consensus 148 ~~~ 150 (308)
T PRK14619 148 FRV 150 (308)
T ss_pred EEE
Confidence 544
No 61
>PLN02256 arogenate dehydrogenase
Probab=99.65 E-value=1.9e-14 Score=112.83 Aligned_cols=138 Identities=15% Similarity=0.130 Sum_probs=103.2
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhh-cCCCEEEEeccChhhhhhhhcCcc
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAG-KDVSALVVVISHVDQIDDIFFGHE 80 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~v~~~~~ 80 (173)
.++|+|||+|.||..+++.|.+.|++|++||+++.. +...+.|+....+..+++ .++|+|++|+| +..+.+++ +
T Consensus 36 ~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp-~~~~~~vl---~ 110 (304)
T PLN02256 36 KLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTS-ILSTEAVL---R 110 (304)
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecC-HHHHHHHH---H
Confidence 469999999999999999999999999999999743 444456777667777776 47999999999 56777877 3
Q ss_pred ch-hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec---------------eeeeeec--------CHhhHHHHH
Q 044797 81 GV-LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE---------------RMFLISS--------SIDCFTYLF 136 (173)
Q Consensus 81 ~i-~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~---------------~~~~~~g--------~~~~~~~~~ 136 (173)
++ .+.++++++++|+++++....+.+.+.+.. +.+|+.. ..+++.. +++..+.++
T Consensus 111 ~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~-~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~ 189 (304)
T PLN02256 111 SLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE-EFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFL 189 (304)
T ss_pred hhhhhccCCCCEEEecCCchHHHHHHHHHhCCC-CCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHHH
Confidence 45 466889999999999877777777776643 3444321 1222222 456677889
Q ss_pred HHHHhhCCc
Q 044797 137 LVKNEFFID 145 (173)
Q Consensus 137 ~~~~~~g~~ 145 (173)
.+++.+|..
T Consensus 190 ~l~~~lGa~ 198 (304)
T PLN02256 190 DIFEEEGCR 198 (304)
T ss_pred HHHHHCCCE
Confidence 999999853
No 62
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.64 E-value=9.9e-15 Score=116.19 Aligned_cols=155 Identities=14% Similarity=0.104 Sum_probs=106.4
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-----------------ecChhhhhcCCCEEE
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-----------------SASPMDAGKDVSALV 63 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-----------------~~~~~~~~~~~dvii 63 (173)
|||||+|||+|.||+.+|..|.++|++|++|+|++. .+.+.+.|... .++. +.++++|+||
T Consensus 1 ~~mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vi 78 (341)
T PRK08229 1 MMARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVL 78 (341)
T ss_pred CCceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEE
Confidence 889999999999999999999999999999999753 35555554321 2233 5567899999
Q ss_pred EeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC----Cceeee----c---------eeeeee
Q 044797 64 VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN----LTFYIL----E---------RMFLIS 126 (173)
Q Consensus 64 ~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~----g~~~v~----~---------~~~~~~ 126 (173)
+|+|.+ +..+++ +.+.+.+.++++|++++++ ....+.+.+.+.+. ++.++. . +.+.++
T Consensus 79 l~vk~~-~~~~~~---~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~~g~~~~~~~~~~pg~~~~~~~g~l~~~ 153 (341)
T PRK08229 79 VTVKSA-ATADAA---AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVLAGMVPFNVISRGPGAFHQGTSGALAIE 153 (341)
T ss_pred EEecCc-chHHHH---HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEEEEEEEEEEEecCCceEEecCCCceEec
Confidence 999954 566776 4677788889998888653 33445666666432 111110 0 011222
Q ss_pred cCHhhHHHHHHHHHhhCC-ceeecCCCchHhHhHHhHhh
Q 044797 127 SSIDCFTYLFLVKNEFFI-DKKVNISGQEIHWGYLKINY 164 (173)
Q Consensus 127 g~~~~~~~~~~~~~~~g~-~~~~g~~Gsg~a~~~~~~~~ 164 (173)
..+.++.+.++|+..|. ..+.++.+.+ .|.++++|.
T Consensus 154 -~~~~~~~~~~~l~~~g~~~~~~~di~~~-~w~Kl~~N~ 190 (341)
T PRK08229 154 -ASPALRPFAAAFARAGLPLVTHEDMRAV-QWAKLLLNL 190 (341)
T ss_pred -CCchHHHHHHHHHhcCCCceecchhHHH-HHHHHHHHh
Confidence 23456788899988885 4566776655 667777774
No 63
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.64 E-value=1.6e-14 Score=112.34 Aligned_cols=142 Identities=15% Similarity=0.165 Sum_probs=99.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHH-----------HHHcC-------------CceecChhhhhcC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDK-----------FFMLG-------------GIRSASPMDAGKD 58 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~-----------~~~~g-------------~~~~~~~~~~~~~ 58 (173)
+||+|||+|.||.+++..++++|++|++||++++++++ +.+.| +..+++.+ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 58999999999999999999999999999999988752 33333 23345554 4789
Q ss_pred CCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece-----eee---ee
Q 044797 59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER-----MFL---IS 126 (173)
Q Consensus 59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~-----~~~---~~ 126 (173)
||+||+|+|++..++..++ .++.+.+++++++.+.+++.+ ...+.+.+.. .+.|+.... +-+ -+
T Consensus 83 aDlVi~av~e~~~~k~~~~--~~l~~~~~~~~il~s~ts~~~--~~~la~~~~~~~r~ig~h~~~P~~~~~~vev~~g~~ 158 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIF--AQLDEIAKPEAILATNTSSLS--ITELAAATKRPDKVIGMHFFNPVPVMKLVEIIRGLA 158 (282)
T ss_pred CCeeeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCCCC--HHHHHHhhCCCcceEEeeccCCcccCccEEEeCCCC
Confidence 9999999997666664444 457788888888854443322 2256666532 244444321 222 24
Q ss_pred cCHhhHHHHHHHHHhhCCc-eeec
Q 044797 127 SSIDCFTYLFLVKNEFFID-KKVN 149 (173)
Q Consensus 127 g~~~~~~~~~~~~~~~g~~-~~~g 149 (173)
.+++..+.++++++.+|+. .+++
T Consensus 159 t~~e~~~~~~~l~~~lGk~pv~~~ 182 (282)
T PRK05808 159 TSDATHEAVEALAKKIGKTPVEVK 182 (282)
T ss_pred CCHHHHHHHHHHHHHcCCeeEEec
Confidence 5678899999999999974 4453
No 64
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.63 E-value=4.2e-15 Score=108.73 Aligned_cols=107 Identities=19% Similarity=0.298 Sum_probs=77.9
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc--------------------CCceecChhhhhcCCCEE
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML--------------------GGIRSASPMDAGKDVSAL 62 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~~~~~~~~~dvi 62 (173)
|||+|||+|++|.++|..|+++|++|+++|.++++++.+.+- ....+++..+++.++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 699999999999999999999999999999999998876431 123566778889999999
Q ss_pred EEeccChh---------hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHH-HHHhc
Q 044797 63 VVVISHVD---------QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLE-KTFTG 112 (173)
Q Consensus 63 i~~v~~~~---------~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~-~~l~~ 112 (173)
|+|+|.|. .+..++ +.+.++++++++++..||..|.+++++. ..+++
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~---~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~ 137 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAI---ESIAPVLRPGDLVVIESTVPPGTTEELLKPILEK 137 (185)
T ss_dssp EE----EBETTTSBETHHHHHHH---HHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHH
T ss_pred EEecCCCccccCCccHHHHHHHH---HHHHHHHhhcceEEEccEEEEeeehHhhhhhhhh
Confidence 99998653 233444 5678889999999999999999998444 44443
No 65
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.62 E-value=1e-14 Score=111.30 Aligned_cols=137 Identities=13% Similarity=0.207 Sum_probs=101.9
Q ss_pred CeEEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHH
Q 044797 26 YKVQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQ 104 (173)
Q Consensus 26 ~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~ 104 (173)
++|++|+|++++.+.+.+. |+....++.++++++|+||+|+| |+++++++ +++.+.+.++++|++++.+- ..+
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl---~~l~~~~~~~~~ivS~~agi--~~~ 83 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVL---SELKSEKGKDKLLISIAAGV--TLE 83 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHH---HHHhhhccCCCEEEEecCCC--CHH
Confidence 6899999999998887654 87778888898999999999999 88899988 45666667788999998764 345
Q ss_pred HHHHHHhc-CCc-eeee-------ceeeeeecC----HhhHHHHHHHHHhhCCceee---------cCCCchHhHhHHhH
Q 044797 105 KLEKTFTG-NLT-FYIL-------ERMFLISSS----IDCFTYLFLVKNEFFIDKKV---------NISGQEIHWGYLKI 162 (173)
Q Consensus 105 ~l~~~l~~-~g~-~~v~-------~~~~~~~g~----~~~~~~~~~~~~~~g~~~~~---------g~~Gsg~a~~~~~~ 162 (173)
.+.+.+.. ..+ +.+. .++..+..+ ++..+.++.+|+.+|...++ +.+||||||+|+
T Consensus 84 ~l~~~~~~~~~ivR~mPn~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~~~v~E~~~~~~talsgsgPA~~~~-- 161 (245)
T TIGR00112 84 KLSQLLGGTRRVVRVMPNTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGEVVELPEALMDAVTALSGSGPAYVFL-- 161 (245)
T ss_pred HHHHHcCCCCeEEEECCChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCCEEEECHHHcchHHhhccCcHHHHHH--
Confidence 67777642 112 2111 124444433 34568899999999986654 789999999998
Q ss_pred hhhHhhhhcC
Q 044797 163 NYFIRVMTDG 172 (173)
Q Consensus 163 ~~~~~~~~~~ 172 (173)
|+++|.|+
T Consensus 162 --~~~al~~~ 169 (245)
T TIGR00112 162 --FIEALADA 169 (245)
T ss_pred --HHHHHHHH
Confidence 77777653
No 66
>PRK07574 formate dehydrogenase; Provisional
Probab=99.60 E-value=1.3e-14 Score=116.75 Aligned_cols=112 Identities=12% Similarity=0.056 Sum_probs=96.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
++|||||+|+||..+|+.|...|++|.+|||++...+...+.++....+++++++.||+|++++|...+++.++. .+.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~~ 270 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFD--ADV 270 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhC--HHH
Confidence 689999999999999999999999999999986443433445666667899999999999999998888888883 467
Q ss_pred hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797 83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF 116 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~ 116 (173)
+..+++|+++||++++...+.+.|.+.|+...+.
T Consensus 271 l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 271 LSRMKRGSYLVNTARGKIVDRDAVVRALESGHLA 304 (385)
T ss_pred HhcCCCCcEEEECCCCchhhHHHHHHHHHhCCcc
Confidence 8899999999999999999999999999875553
No 67
>PLN03139 formate dehydrogenase; Provisional
Probab=99.58 E-value=2.2e-14 Score=115.30 Aligned_cols=112 Identities=11% Similarity=0.021 Sum_probs=96.9
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
++|||||+|+||..+|+.|...|++|.+||+++...+...+.|+....++++++++||+|++++|..++++.++. .+.
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~--~~~ 277 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFN--KER 277 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhC--HHH
Confidence 589999999999999999999999999999986444444455766667899999999999999998888888883 467
Q ss_pred hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797 83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF 116 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~ 116 (173)
+..+++|+++||++.+...+.+.+.+.|+...+.
T Consensus 278 l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~ 311 (386)
T PLN03139 278 IAKMKKGVLIVNNARGAIMDTQAVADACSSGHIG 311 (386)
T ss_pred HhhCCCCeEEEECCCCchhhHHHHHHHHHcCCce
Confidence 8899999999999999999999999999875553
No 68
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.58 E-value=3.1e-14 Score=114.73 Aligned_cols=130 Identities=14% Similarity=0.195 Sum_probs=97.4
Q ss_pred CCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797 2 ASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE 80 (173)
Q Consensus 2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~ 80 (173)
+++|+||| +|.||..+++.|.++|++|++||+++. .+..+++++||+||+|+|.. ....++ .
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~-~~~~~~---~ 160 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIH-LTEEVI---A 160 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHH-HHHHHH---H
Confidence 47899998 999999999999999999999998641 24567788999999999954 456666 4
Q ss_pred chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee-----c--------e-eeeeec-CHhhHHHHHHHHHhhCC-
Q 044797 81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL-----E--------R-MFLISS-SIDCFTYLFLVKNEFFI- 144 (173)
Q Consensus 81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~-----~--------~-~~~~~g-~~~~~~~~~~~~~~~g~- 144 (173)
++.+ ++++++++|++++++.....+.+.+.. .|+. . . +++..+ +++.++.++++++.+|.
T Consensus 161 ~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~~---~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~ 236 (374)
T PRK11199 161 RLPP-LPEDCILVDLTSVKNAPLQAMLAAHSG---PVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGAR 236 (374)
T ss_pred HHhC-CCCCcEEEECCCccHHHHHHHHHhCCC---CEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCCE
Confidence 5666 889999999999888777777765432 3441 1 1 333333 45678889999999996
Q ss_pred ceeecCCC
Q 044797 145 DKKVNISG 152 (173)
Q Consensus 145 ~~~~g~~G 152 (173)
+.++++.+
T Consensus 237 v~~~~~~~ 244 (374)
T PRK11199 237 LHRISAVE 244 (374)
T ss_pred EEECCHHH
Confidence 44554433
No 69
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.58 E-value=3e-14 Score=103.83 Aligned_cols=137 Identities=12% Similarity=0.101 Sum_probs=93.3
Q ss_pred eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-----------c-------------CCceecChhhhhcCC
Q 044797 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-----------L-------------GGIRSASPMDAGKDV 59 (173)
Q Consensus 4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~~ 59 (173)
||+|||+|.||..+|..++.+|++|++||++++.++...+ . .+..+++++++. ++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 6999999999999999999999999999999987654211 1 234567788877 99
Q ss_pred CEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece--------eeeeec
Q 044797 60 SALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER--------MFLISS 127 (173)
Q Consensus 60 dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~--------~~~~~g 127 (173)
|+||.++|.+...++-++ .++.+.++++.+|.+.++.-+. .++.+.+.. .|.||+..+ +..-..
T Consensus 80 dlViEai~E~l~~K~~~~--~~l~~~~~~~~ilasnTSsl~i--~~la~~~~~p~R~ig~Hf~~P~~~~~lVEvv~~~~T 155 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELF--AELDEICPPDTILASNTSSLSI--SELAAALSRPERFIGMHFFNPPHLMPLVEVVPGPKT 155 (180)
T ss_dssp SEEEE-S-SSHHHHHHHH--HHHHCCS-TTSEEEE--SSS-H--HHHHTTSSTGGGEEEEEE-SSTTT--EEEEEE-TTS
T ss_pred heehhhccccHHHHHHHH--HHHHHHhCCCceEEecCCCCCH--HHHHhccCcCceEEEEecccccccCceEEEeCCCCC
Confidence 999999998887777665 4677888899998766554432 344554432 256776543 233345
Q ss_pred CHhhHHHHHHHHHhhCCc
Q 044797 128 SIDCFTYLFLVKNEFFID 145 (173)
Q Consensus 128 ~~~~~~~~~~~~~~~g~~ 145 (173)
++++.+.+..++..+|+.
T Consensus 156 ~~~~~~~~~~~~~~~gk~ 173 (180)
T PF02737_consen 156 SPETVDRVRALLRSLGKT 173 (180)
T ss_dssp -HHHHHHHHHHHHHTT-E
T ss_pred CHHHHHHHHHHHHHCCCE
Confidence 578889999999999863
No 70
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.58 E-value=1.3e-13 Score=103.57 Aligned_cols=146 Identities=12% Similarity=0.132 Sum_probs=100.6
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc--------CC--c-eecChhhhhcCCCEEEEeccChh
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML--------GG--I-RSASPMDAGKDVSALVVVISHVD 70 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------g~--~-~~~~~~~~~~~~dvii~~v~~~~ 70 (173)
|||+||| +|+||+++++.|.++|++|.+|+|++++.+.+.+. |. . ...+..++++++|+||+|+| ++
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp-~~ 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVP-WD 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECC-HH
Confidence 5899997 89999999999999999999999999888765442 21 1 22356778889999999999 56
Q ss_pred hhhhhhcCccchhhcCCCCCEEEEcCCCCHH---------------HHHHHHHHHhcCCceeeec---------------
Q 044797 71 QIDDIFFGHEGVLKGLQKGAVIILQSTILPS---------------HMQKLEKTFTGNLTFYILE--------------- 120 (173)
Q Consensus 71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~---------------~~~~l~~~l~~~g~~~v~~--------------- 120 (173)
.+.+++ +++.+.+. +++++|++..... ..+.+++.+.. +.+++..
T Consensus 80 ~~~~~l---~~l~~~l~-~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~~~~~ 154 (219)
T TIGR01915 80 HVLKTL---ESLRDELS-GKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQDVDDE 154 (219)
T ss_pred HHHHHH---HHHHHhcc-CCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcCCCCC
Confidence 677777 34555554 5899998765332 12445555532 1222211
Q ss_pred --eeeeeecC-HhhHHHHHHHHHhh-CC-ceeecCCCch
Q 044797 121 --RMFLISSS-IDCFTYLFLVKNEF-FI-DKKVNISGQE 154 (173)
Q Consensus 121 --~~~~~~g~-~~~~~~~~~~~~~~-g~-~~~~g~~Gsg 154 (173)
...+++|+ +++.+.+..+.+.+ |. .+..|..-.+
T Consensus 155 ~~~~~~v~Gdd~~ak~~v~~L~~~~~G~~~vd~G~l~~a 193 (219)
T TIGR01915 155 VDCDVLVCGDDEEAKEVVAELAGRIDGLRALDAGPLENA 193 (219)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHhcCCCCcccCCchhhH
Confidence 13445555 66788899999999 85 4566654433
No 71
>PLN02712 arogenate dehydrogenase
Probab=99.57 E-value=1.1e-13 Score=118.48 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=87.3
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhc-CCCEEEEeccChhhhhhhhcCcc
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGK-DVSALVVVISHVDQIDDIFFGHE 80 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~~dvii~~v~~~~~~~~v~~~~~ 80 (173)
.++|+|||+|.||..++++|.+.|++|.+|||+... +...+.|+....+.+++++ ++|+||+|+| +..+.+++ +
T Consensus 369 ~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~vi---~ 443 (667)
T PLN02712 369 KLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKVL---K 443 (667)
T ss_pred CCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHHH---H
Confidence 479999999999999999999999999999999654 4455667776777888775 5899999999 56777777 3
Q ss_pred chhh-cCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797 81 GVLK-GLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI 118 (173)
Q Consensus 81 ~i~~-~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v 118 (173)
++.. .++++++++|+++++....+.+.+.+. .+..|+
T Consensus 444 ~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~-~~~~~v 481 (667)
T PLN02712 444 SLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLP-QDFDIL 481 (667)
T ss_pred HHHHhcCCCCcEEEECCCccHHHHHHHHHhcc-CCCceE
Confidence 4443 578899999999987555566665553 456666
No 72
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.57 E-value=2.1e-14 Score=104.52 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=91.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
++|||||+|++|..+|+.+...|.+|.+|||+..........+. ...+++++++.||+|++++|.....+..+. .+.
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~--~~~ 113 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-EYVSLDELLAQADIVSLHLPLTPETRGLIN--AEF 113 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBS--HHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc-eeeehhhhcchhhhhhhhhccccccceeee--eee
Confidence 68999999999999999999999999999999887664555555 455899999999999999997777777773 457
Q ss_pred hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797 83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF 116 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~ 116 (173)
+..+++|.++|+++.+...+.+.+.+.+++..+.
T Consensus 114 l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 114 LAKMKPGAVLVNVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp HHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred eeccccceEEEeccchhhhhhhHHHHHHhhccCc
Confidence 7899999999999999888889999999875554
No 73
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.56 E-value=9.6e-15 Score=100.21 Aligned_cols=95 Identities=18% Similarity=0.279 Sum_probs=66.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEE-EEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQ-AFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE 80 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~ 80 (173)
+||+|||+|++|..+++.|.++|++|. +|+|++++.+++.+. +.....+..++++++|++|+++||+ .+.++. +
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va---~ 86 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVA---E 86 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHH---H
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHH---H
Confidence 699999999999999999999999986 568998887777664 4445567788899999999999965 677887 4
Q ss_pred chhhc--CCCCCEEEEcCCCCHH
Q 044797 81 GVLKG--LQKGAVIILQSTILPS 101 (173)
Q Consensus 81 ~i~~~--l~~g~~ii~~st~~~~ 101 (173)
++... .++|++++.+|...+.
T Consensus 87 ~La~~~~~~~g~iVvHtSGa~~~ 109 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTSGALGS 109 (127)
T ss_dssp HHHCC--S-TT-EEEES-SS--G
T ss_pred HHHHhccCCCCcEEEECCCCChH
Confidence 56665 7899999999876544
No 74
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.56 E-value=4.2e-14 Score=100.94 Aligned_cols=91 Identities=16% Similarity=0.275 Sum_probs=75.4
Q ss_pred eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC--------------CceecChhhhhcCCCEEEEeccCh
Q 044797 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG--------------GIRSASPMDAGKDVSALVVVISHV 69 (173)
Q Consensus 4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g--------------~~~~~~~~~~~~~~dvii~~v~~~ 69 (173)
||+|+|+|++|+++|..|..+|++|++|.|+++..+.+.+.+ +..+++++++++++|+|++++| .
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP-s 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP-S 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S--G
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc-H
Confidence 799999999999999999999999999999999988877632 2357788899999999999999 5
Q ss_pred hhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797 70 DQIDDIFFGHEGVLKGLQKGAVIILQSTI 98 (173)
Q Consensus 70 ~~~~~v~~~~~~i~~~l~~g~~ii~~st~ 98 (173)
+..++++ +++.+++++++.++..+.+
T Consensus 80 ~~~~~~~---~~l~~~l~~~~~ii~~~KG 105 (157)
T PF01210_consen 80 QAHREVL---EQLAPYLKKGQIIISATKG 105 (157)
T ss_dssp GGHHHHH---HHHTTTSHTT-EEEETS-S
T ss_pred HHHHHHH---HHHhhccCCCCEEEEecCC
Confidence 6778888 6788999999999988754
No 75
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.55 E-value=5.4e-14 Score=111.64 Aligned_cols=109 Identities=11% Similarity=0.100 Sum_probs=92.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
++|||||+|+||..+|+.|...|++|.+|||++.... ....+.. ..++++++++||+|++++|....++.++. .+.
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~--~~~ 226 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA-EKELGAE-YRPLEELLRESDFVSLHVPLTKETYHMIN--EER 226 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCCE-ecCHHHHHhhCCEEEEeCCCChHHhhccC--HHH
Confidence 6899999999999999999999999999999865432 2333544 34789999999999999998888888874 367
Q ss_pred hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797 83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT 115 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~ 115 (173)
++.+++|+++||++++...+.+.+.+.++...+
T Consensus 227 ~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i 259 (333)
T PRK13243 227 LKLMKPTAILVNTARGKVVDTKALVKALKEGWI 259 (333)
T ss_pred HhcCCCCeEEEECcCchhcCHHHHHHHHHcCCe
Confidence 788999999999999999999999999976544
No 76
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.54 E-value=9e-14 Score=110.19 Aligned_cols=108 Identities=14% Similarity=0.141 Sum_probs=91.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
++|||||+|.||.++|+.|...|++|.+||++++..... .....+++++++++|+|++++|...+++..+. .+.
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li~--~~~ 220 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLFD--KAM 220 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHh--HHH
Confidence 589999999999999999999999999999998654322 23455789999999999999998877777774 467
Q ss_pred hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797 83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF 116 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~ 116 (173)
++.+++|.++|+++.+...+...|.+.|....+.
T Consensus 221 l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~ 254 (330)
T PRK12480 221 FDHVKKGAILVNAARGAVINTPDLIAAVNDGTLL 254 (330)
T ss_pred HhcCCCCcEEEEcCCccccCHHHHHHHHHcCCee
Confidence 7889999999999999888889999999765443
No 77
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.54 E-value=2.7e-13 Score=104.81 Aligned_cols=139 Identities=17% Similarity=0.296 Sum_probs=103.1
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCC--hHHHHHHHHcCCcee--cCh-hhhhcCCCEEEEeccChhhhhhh
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEIS--DPLVDKFFMLGGIRS--ASP-MDAGKDVSALVVVISHVDQIDDI 75 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~--~~~~~~~~~~g~~~~--~~~-~~~~~~~dvii~~v~~~~~~~~v 75 (173)
|+++|+|+|+|.||..+++.|.+.|+.+.+++++ .+..+...+.|+... .+. .+...++|+||+||| -..+..+
T Consensus 2 ~~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavP-i~~~~~~ 80 (279)
T COG0287 2 ASMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVP-IEATEEV 80 (279)
T ss_pred CCcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEecc-HHHHHHH
Confidence 4689999999999999999999999988666555 444555555565432 232 567778999999999 5667788
Q ss_pred hcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec---------------eeeeeecC----HhhHHHHH
Q 044797 76 FFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE---------------RMFLISSS----IDCFTYLF 136 (173)
Q Consensus 76 ~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~---------------~~~~~~g~----~~~~~~~~ 136 (173)
+ +++.+++++|.+++|.++.+....+.+.+...+.. +++.. ..+.++.. .+..+.++
T Consensus 81 l---~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~ 156 (279)
T COG0287 81 L---KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVK 156 (279)
T ss_pred H---HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHH
Confidence 8 57888999999999999998888888888775533 44421 13333322 34677888
Q ss_pred HHHHhhCC
Q 044797 137 LVKNEFFI 144 (173)
Q Consensus 137 ~~~~~~g~ 144 (173)
.+++.+|-
T Consensus 157 ~~~~~~ga 164 (279)
T COG0287 157 RLWEALGA 164 (279)
T ss_pred HHHHHcCC
Confidence 88888884
No 78
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.53 E-value=3.6e-13 Score=106.61 Aligned_cols=111 Identities=23% Similarity=0.381 Sum_probs=88.7
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-------------------cC-CceecChhhhhcCCC
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-------------------LG-GIRSASPMDAGKDVS 60 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-------------------~g-~~~~~~~~~~~~~~d 60 (173)
|+++|+|||+|++|.++|..++++|++|..+|.++.+.+.+.. .| .+.++++.+ ++.||
T Consensus 8 ~~~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~d 86 (436)
T COG0677 8 MSATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECD 86 (436)
T ss_pred CceEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCC
Confidence 4579999999999999999999999999999999998876532 12 345555555 45899
Q ss_pred EEEEeccChh------hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc
Q 044797 61 ALVVVISHVD------QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG 112 (173)
Q Consensus 61 vii~~v~~~~------~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~ 112 (173)
++++|||.|- ++..+....+.+.+.|++|+++|-.||..|.+++++...+.+
T Consensus 87 v~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle 144 (436)
T COG0677 87 VFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE 144 (436)
T ss_pred EEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence 9999999652 222232222468899999999999999999999999998766
No 79
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.53 E-value=4.2e-13 Score=98.49 Aligned_cols=145 Identities=15% Similarity=0.153 Sum_probs=98.2
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCC-hHHHHHHHHc-CC-ceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEIS-DPLVDKFFML-GG-IRSASPMDAGKDVSALVVVISHVDQIDDIFFG 78 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~-~~~~~~~~~~-g~-~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~ 78 (173)
||+++|+|.|++|++++++|.+.||+|.+-+|+ +++.+...+. +. ....++.++++.+|+||+++|. .++..++
T Consensus 1 m~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~-~a~~~v~-- 77 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPF-EAIPDVL-- 77 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccH-HHHHhHH--
Confidence 578999999999999999999999999988665 4444444332 22 2345688999999999999995 5566776
Q ss_pred ccchhhcCCCCCEEEEcCCC---------------CHHHHHHHHHHHhcCCc-ee---e------------eceeeeeec
Q 044797 79 HEGVLKGLQKGAVIILQSTI---------------LPSHMQKLEKTFTGNLT-FY---I------------LERMFLISS 127 (173)
Q Consensus 79 ~~~i~~~l~~g~~ii~~st~---------------~~~~~~~l~~~l~~~g~-~~---v------------~~~~~~~~g 127 (173)
.++...+. |+++||++.- .-...+.+++.+....+ +- + ....++++|
T Consensus 78 -~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~akVVkAFn~i~a~~l~~~~~~~~~~~v~vag 155 (211)
T COG2085 78 -AELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGAKVVKAFNTIPAAVLADLAKPGGRRDVLVAG 155 (211)
T ss_pred -HHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCcchhhhhcccCHHHhccCCCcCCceeEEEec
Confidence 45655554 8999999763 11123444444433211 10 0 112556666
Q ss_pred C-HhhHHHHHHHHHhhCC-ceeecCC
Q 044797 128 S-IDCFTYLFLVKNEFFI-DKKVNIS 151 (173)
Q Consensus 128 ~-~~~~~~~~~~~~~~g~-~~~~g~~ 151 (173)
+ .++.+.+..+.+.+|. ..-+|..
T Consensus 156 DD~~Ak~~v~~L~~~iG~~~ld~G~L 181 (211)
T COG2085 156 DDAEAKAVVAELAEDIGFRPLDAGPL 181 (211)
T ss_pred CcHHHHHHHHHHHHhcCcceeecccc
Confidence 5 4588999999999985 3445543
No 80
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.53 E-value=4.8e-13 Score=110.42 Aligned_cols=108 Identities=14% Similarity=0.095 Sum_probs=88.0
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHHcC-------------------CceecChhhhhcCCC
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFMLG-------------------GIRSASPMDAGKDVS 60 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~g-------------------~~~~~~~~~~~~~~d 60 (173)
+|||+|||+|.+|..+|..|+++| ++|+++|.++++++.+.+.+ ...+++..++++++|
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad 80 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD 80 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence 468999999999999999999885 78999999999998864321 234556677889999
Q ss_pred EEEEeccChh--------------hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc
Q 044797 61 ALVVVISHVD--------------QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG 112 (173)
Q Consensus 61 vii~~v~~~~--------------~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~ 112 (173)
++|+|||.|. .++.++ +.+.++++++++|+..||..|.+.+++.+.+.+
T Consensus 81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~---~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~ 143 (473)
T PLN02353 81 IVFVSVNTPTKTRGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH 143 (473)
T ss_pred EEEEEeCCCCCCCCCcCCCCCcHHHHHHHH---HHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence 9999997554 233333 467788999999999999999999999888775
No 81
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.52 E-value=3.8e-13 Score=104.96 Aligned_cols=136 Identities=14% Similarity=0.192 Sum_probs=101.4
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc--------C------CceecChhhhhcCCCEEEEecc
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML--------G------GIRSASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--------g------~~~~~~~~~~~~~~dvii~~v~ 67 (173)
++||+|||.|.+|+++|+-|.++|++|++|.|+++-.+.+... + +..+++..++++++|+|++++|
T Consensus 1 ~~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP 80 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP 80 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence 4799999999999999999999999999999999988877653 1 3457788999999999999999
Q ss_pred ChhhhhhhhcCccchhhcCCCCCEEEEcCCC-CHHHHHHHHHHHhc----CCceeeece-------------eeeeecCH
Q 044797 68 HVDQIDDIFFGHEGVLKGLQKGAVIILQSTI-LPSHMQKLEKTFTG----NLTFYILER-------------MFLISSSI 129 (173)
Q Consensus 68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~-~~~~~~~l~~~l~~----~g~~~v~~~-------------~~~~~g~~ 129 (173)
.+.++.++ +++.+.++++..+++++-+ .+.+.+.+.+.+++ ..+.++..+ ++.-+-++
T Consensus 81 -s~~~r~v~---~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~ 156 (329)
T COG0240 81 -SQALREVL---RQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQ 156 (329)
T ss_pred -hHHHHHHH---HHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCH
Confidence 57889998 4566788899999998753 44455555555544 223344332 33444455
Q ss_pred hhHHHHHHHHHh
Q 044797 130 DCFTYLFLVKNE 141 (173)
Q Consensus 130 ~~~~~~~~~~~~ 141 (173)
+..+.++.+|+.
T Consensus 157 ~~a~~v~~~f~~ 168 (329)
T COG0240 157 EAAEKVQALFSS 168 (329)
T ss_pred HHHHHHHHHhCC
Confidence 556666666654
No 82
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.51 E-value=1.6e-12 Score=103.72 Aligned_cols=159 Identities=13% Similarity=0.033 Sum_probs=105.3
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC---------------CceecChhhhhcCCCEEEEec
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG---------------GIRSASPMDAGKDVSALVVVI 66 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g---------------~~~~~~~~~~~~~~dvii~~v 66 (173)
+|||+|||+|.||++++..|.++| +++.|.|+++..+.+.+.+ +..+++..++++++|+||+++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilav 85 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGV 85 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEe
Confidence 479999999999999999999999 6888999999888776532 124556677888999999999
Q ss_pred cChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHH-H----HHHHHHHHhcCCceeeece-----------e--eeeecC
Q 044797 67 SHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPS-H----MQKLEKTFTGNLTFYILER-----------M--FLISSS 128 (173)
Q Consensus 67 ~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~-~----~~~l~~~l~~~g~~~v~~~-----------~--~~~~g~ 128 (173)
| +..+++++ +++.+.++++..+++.+.+-.. + .+.+.+.+.......+..+ + .+-+.+
T Consensus 86 p-s~~~~~vl---~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via~~~ 161 (341)
T PRK12439 86 P-SHGFRGVL---TELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAMPD 161 (341)
T ss_pred C-HHHHHHHH---HHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEEeCC
Confidence 9 67788888 5677888888888877664332 1 2334444422222222221 2 222334
Q ss_pred HhhHHHHHHHHHhhCCceeecCCCchHhHhHHhHhhh
Q 044797 129 IDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYF 165 (173)
Q Consensus 129 ~~~~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~ 165 (173)
++..+.+..+|+.-+...++..-=-|.-|..+..|-+
T Consensus 162 ~~~~~~v~~lf~~~~~~v~~s~Di~gve~~~alkNv~ 198 (341)
T PRK12439 162 QHLATRLSPLFRTRRFRVYTTDDVVGVEMAGALKNVF 198 (341)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCchHHHHHHHHHHHHH
Confidence 4555667777666555556555445555555544443
No 83
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.51 E-value=1.3e-13 Score=107.93 Aligned_cols=105 Identities=15% Similarity=0.119 Sum_probs=89.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCc-eecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGI-RSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
++|||||+|+||..+|+.+...|++|.+|||+... .+.. ...++++++++||+|++++|..++++.++. .+
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~--~~ 194 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMIN--SK 194 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcC--HH
Confidence 68999999999999999999999999999998532 2322 245789999999999999998888888873 45
Q ss_pred hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797 82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT 115 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~ 115 (173)
.+..+++|+++|+++++.+.+.+.+.+.+++..+
T Consensus 195 ~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i 228 (303)
T PRK06436 195 MLSLFRKGLAIINVARADVVDKNDMLNFLRNHND 228 (303)
T ss_pred HHhcCCCCeEEEECCCccccCHHHHHHHHHcCCc
Confidence 7788999999999999999999999999986544
No 84
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.49 E-value=1e-12 Score=102.84 Aligned_cols=160 Identities=13% Similarity=0.089 Sum_probs=105.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-----------ecChhhhhcCCCEEEEeccChhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-----------SASPMDAGKDVSALVVVISHVDQ 71 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-----------~~~~~~~~~~~dvii~~v~~~~~ 71 (173)
|||+|||+|.||+.+|..|.++|++|++++|++++.+.+.+.|... .++..+. +.+|+||+++|. .+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~-~~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKA-YQ 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccc-cc
Confidence 4899999999999999999999999999999988888877766422 3344444 789999999994 56
Q ss_pred hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc----eeee-------------ceeeeeecCH---hh
Q 044797 72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT----FYIL-------------ERMFLISSSI---DC 131 (173)
Q Consensus 72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~----~~v~-------------~~~~~~~g~~---~~ 131 (173)
++.++ +.+.+.+.+++.|+...++ ....+.+.+.+.+..+ .+.. .+.+.++..+ +.
T Consensus 79 ~~~~~---~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~~~ig~~~~~~~~ 154 (304)
T PRK06522 79 LPAAL---PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGRLKIGEPDGESAA 154 (304)
T ss_pred HHHHH---HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCCEEEeCCCCCcHH
Confidence 77777 4677778788888877664 2333455555543211 1111 0123333322 22
Q ss_pred HHHHHHHHHhhCCceeecCCCchHhHhHHhHhhhHhh
Q 044797 132 FTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRV 168 (173)
Q Consensus 132 ~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~~~~ 168 (173)
.+.+..+|+..|...++...=....|.++.+|..+..
T Consensus 155 ~~~l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~ 191 (304)
T PRK06522 155 AEALADLLNAAGLDVEWSPDIRTEIWRKLWVNCVINP 191 (304)
T ss_pred HHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHhchhH
Confidence 4456666666665555544445566777766655543
No 85
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.49 E-value=2e-12 Score=102.52 Aligned_cols=92 Identities=12% Similarity=0.184 Sum_probs=72.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC--------------CceecChhhhh-cCCCEEEEecc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG--------------GIRSASPMDAG-KDVSALVVVIS 67 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g--------------~~~~~~~~~~~-~~~dvii~~v~ 67 (173)
|||+|||+|.||+.++..|.++|++|++|+|+++..+.+.+.+ +...++..+.+ .++|+||+++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 4899999999999999999999999999999998887776531 11334555665 58999999999
Q ss_pred ChhhhhhhhcCccchhh-cCCCCCEEEEcCCC
Q 044797 68 HVDQIDDIFFGHEGVLK-GLQKGAVIILQSTI 98 (173)
Q Consensus 68 ~~~~~~~v~~~~~~i~~-~l~~g~~ii~~st~ 98 (173)
+.++++++ +++.+ .+.++..++..+.+
T Consensus 81 -s~~~~~~l---~~l~~~~l~~~~~vv~~~nG 108 (326)
T PRK14620 81 -TQQLRTIC---QQLQDCHLKKNTPILICSKG 108 (326)
T ss_pred -HHHHHHHH---HHHHHhcCCCCCEEEEEEcC
Confidence 67788888 56776 77777766666544
No 86
>PLN02712 arogenate dehydrogenase
Probab=99.49 E-value=6.1e-13 Score=113.92 Aligned_cols=110 Identities=17% Similarity=0.176 Sum_probs=87.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhh-cCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAG-KDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
++|+|||+|.||..+++.|.++|++|.+|||+..+ +...+.|+....+..+++ +++|+|++|+| +..+.+++ ++
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP-~~~~~~vl---~~ 127 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTS-IISTENVL---KS 127 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCC-HHHHHHHH---Hh
Confidence 68999999999999999999999999999998554 445566877777788755 56999999999 56788887 34
Q ss_pred hh-hcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797 82 VL-KGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI 118 (173)
Q Consensus 82 i~-~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v 118 (173)
+. +.++++++|+|+++.+....+.+.+.+.+ +..|+
T Consensus 128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~-~~~~v 164 (667)
T PLN02712 128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE-DFDII 164 (667)
T ss_pred hhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC-CCeEE
Confidence 54 56889999999999887666666666543 44443
No 87
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.48 E-value=2.7e-13 Score=107.65 Aligned_cols=109 Identities=15% Similarity=0.106 Sum_probs=88.8
Q ss_pred CeEEEEeCChhhHHHHHHH-HHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDEYSVDMAASL-IRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l-~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
++|||||+|.||..+|+.| ...|++|++||+++.... ...+....+++++++++|+|++++|.....+.++ + .+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li-~-~~ 221 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLF-N-AD 221 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhc-C-HH
Confidence 6899999999999999999 557899999999875431 1234455689999999999999999777666554 2 34
Q ss_pred hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797 82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF 116 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~ 116 (173)
..+.+++|+++|+++++...+.+.+.+.+....+.
T Consensus 222 ~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ 256 (332)
T PRK08605 222 LFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIK 256 (332)
T ss_pred HHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence 67889999999999999999999999999765553
No 88
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.48 E-value=2.7e-13 Score=96.22 Aligned_cols=113 Identities=14% Similarity=-0.025 Sum_probs=86.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHc-CC----ceecChhhhhcCCCEEEEeccChhh-hhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFML-GG----IRSASPMDAGKDVSALVVVISHVDQ-IDDI 75 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g~----~~~~~~~~~~~~~dvii~~v~~~~~-~~~v 75 (173)
++|+|+|+|.||..+++.|.+.| ++|+++||++++.+.+.+. +. ....+..++++++|+|++|+|.+.+ ++..
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~ 99 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDEL 99 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCCCC
Confidence 68999999999999999999986 7899999999988776543 32 2345667778899999999996554 3333
Q ss_pred hcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 76 FFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 76 ~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
.+. ...++++++++|+++..+.+ .+.+.+++.|.+++...
T Consensus 100 ~~~----~~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~~v~g~ 139 (155)
T cd01065 100 PLP----PSLLKPGGVVYDVVYNPLET--PLLKEARALGAKTIDGL 139 (155)
T ss_pred CCC----HHHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCceeCCH
Confidence 321 13468999999999875544 78888888888877654
No 89
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.48 E-value=1.7e-13 Score=107.82 Aligned_cols=110 Identities=13% Similarity=0.096 Sum_probs=90.9
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
++|||||+|.||..+|+.|...|++|.+||+++++...... .....++++++++||+|++++|..++++.++. .+.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~--~~~ 212 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVGIIN--QQL 212 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHHHhH--HHH
Confidence 58999999999999999999999999999987654221111 11234788999999999999998888888884 457
Q ss_pred hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797 83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF 116 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~ 116 (173)
+..+++|+++|+++.+...+.+.|.+.|.+..+.
T Consensus 213 l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~ 246 (312)
T PRK15469 213 LEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVK 246 (312)
T ss_pred HhcCCCCcEEEECCCccccCHHHHHHHHhcCCee
Confidence 7889999999999999888889999999876554
No 90
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.48 E-value=2.3e-12 Score=101.03 Aligned_cols=162 Identities=13% Similarity=0.128 Sum_probs=106.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-------------ecChhhhhcCCCEEEEeccCh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-------------SASPMDAGKDVSALVVVISHV 69 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------------~~~~~~~~~~~dvii~~v~~~ 69 (173)
|||+|||+|.||..+|..|.++|++|++++| +++.+.+.+.|... .++.++..+.+|+||+|+|.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~- 78 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA- 78 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-
Confidence 5899999999999999999999999999999 88888777655321 23445556789999999995
Q ss_pred hhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC----Cceeeece-------------eeeeecC----
Q 044797 70 DQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN----LTFYILER-------------MFLISSS---- 128 (173)
Q Consensus 70 ~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~----g~~~v~~~-------------~~~~~g~---- 128 (173)
.++++++ +.+.+.+.++++|+...++- ...+.+.+.+.+. ++.+.... .+.++..
T Consensus 79 ~~~~~~~---~~l~~~~~~~~~ii~~~nG~-~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~ 154 (305)
T PRK12921 79 YQLDAAI---PDLKPLVGEDTVIIPLQNGI-GQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQR 154 (305)
T ss_pred cCHHHHH---HHHHhhcCCCCEEEEeeCCC-ChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCc
Confidence 5677777 46777788888888776542 3344566655432 22222211 2233321
Q ss_pred HhhHHHHHHHHHhhCCceeecCCCchHhHhHHhHhhhHhhhh
Q 044797 129 IDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRVMT 170 (173)
Q Consensus 129 ~~~~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~~~~~~ 170 (173)
.+..+.+..+|+..|...+.-..=....|.++.+|..+..++
T Consensus 155 ~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~ 196 (305)
T PRK12921 155 SERTRAVRDALAGARLEVVLSENIRQDIWRKLLFNAVMNGMT 196 (305)
T ss_pred CHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHhHHHHH
Confidence 123345556666666544444434455688888887665543
No 91
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.46 E-value=2.4e-12 Score=101.49 Aligned_cols=134 Identities=13% Similarity=0.006 Sum_probs=93.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHH-HHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLV-DKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~-~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
++|+|||+|+||.++|++|+..|++|.++++++++. +...+.|+... +..++++++|+|++++|+.. ...++. ++
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~-~~~V~~--~~ 93 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEV-QAEVYE--EE 93 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHH-HHHHHH--HH
Confidence 689999999999999999999999999988875544 34444576654 78999999999999999554 477763 35
Q ss_pred hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee-----------------ceeee---eecC--HhhHHHHHHHH
Q 044797 82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL-----------------ERMFL---ISSS--IDCFTYLFLVK 139 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~-----------------~~~~~---~~g~--~~~~~~~~~~~ 139 (173)
+.+.+++|++++-+...... .+...+. .++..+. .++.. +..+ .+..+.+..++
T Consensus 94 I~~~Lk~g~iL~~a~G~~i~---~~~~~p~-~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~ 169 (330)
T PRK05479 94 IEPNLKEGAALAFAHGFNIH---FGQIVPP-ADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYA 169 (330)
T ss_pred HHhcCCCCCEEEECCCCChh---hceeccC-CCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHH
Confidence 77889999988544433222 2222221 2332221 11222 3333 56788899999
Q ss_pred HhhCC
Q 044797 140 NEFFI 144 (173)
Q Consensus 140 ~~~g~ 144 (173)
+.+|.
T Consensus 170 ~aiG~ 174 (330)
T PRK05479 170 KGIGG 174 (330)
T ss_pred HHcCC
Confidence 99985
No 92
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.46 E-value=1.1e-12 Score=102.16 Aligned_cols=139 Identities=13% Similarity=0.107 Sum_probs=100.0
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH-----------HcC-------------CceecChhhhh
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF-----------MLG-------------GIRSASPMDAG 56 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~~~~~~ 56 (173)
+.++|+|||.|.||+.||..++..|++|+++|++++.+++.. +.| +....++. .+
T Consensus 2 ~i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l 80 (307)
T COG1250 2 EIKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-AL 80 (307)
T ss_pred CccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hh
Confidence 357999999999999999999998899999999987665421 112 11233333 68
Q ss_pred cCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcC-CCCHHHHHHHHHHHhc----CCceeeece--------ee
Q 044797 57 KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQS-TILPSHMQKLEKTFTG----NLTFYILER--------MF 123 (173)
Q Consensus 57 ~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~s-t~~~~~~~~l~~~l~~----~g~~~v~~~--------~~ 123 (173)
++||+||.+++.+..++.-++ .++.+..++++++-+.+ +.++. ++.+.+.. .|.||++.. +-
T Consensus 81 ~~~DlVIEAv~E~levK~~vf--~~l~~~~~~~aIlASNTSsl~it---~ia~~~~rper~iG~HFfNP~~~m~LVEvI~ 155 (307)
T COG1250 81 KDADLVIEAVVEDLELKKQVF--AELEALAKPDAILASNTSSLSIT---ELAEALKRPERFIGLHFFNPVPLMPLVEVIR 155 (307)
T ss_pred ccCCEEEEeccccHHHHHHHH--HHHHhhcCCCcEEeeccCCCCHH---HHHHHhCCchhEEEEeccCCCCcceeEEEec
Confidence 899999999999888877666 45777888888886554 44444 33444421 377877654 22
Q ss_pred eeecCHhhHHHHHHHHHhhCCc
Q 044797 124 LISSSIDCFTYLFLVKNEFFID 145 (173)
Q Consensus 124 ~~~g~~~~~~~~~~~~~~~g~~ 145 (173)
..-.++++.+.+..+...+|+.
T Consensus 156 g~~T~~e~~~~~~~~~~~igK~ 177 (307)
T COG1250 156 GEKTSDETVERVVEFAKKIGKT 177 (307)
T ss_pred CCCCCHHHHHHHHHHHHHcCCC
Confidence 3345678899999999999964
No 93
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.46 E-value=5.5e-13 Score=104.08 Aligned_cols=89 Identities=16% Similarity=0.159 Sum_probs=73.7
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
++|||||+|.||.++|++|...|++|.+|++.....+...+.|... .+++++++.+|+|++++|++.+ +.++. +++
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd~~t-~~V~~--~ei 92 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPDEQQ-AHVYK--AEV 92 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCChHH-HHHHH--HHH
Confidence 6899999999999999999999999999987755555555557765 4899999999999999997554 67774 468
Q ss_pred hhcCCCCCEEEEc
Q 044797 83 LKGLQKGAVIILQ 95 (173)
Q Consensus 83 ~~~l~~g~~ii~~ 95 (173)
++.+++|++++-+
T Consensus 93 l~~MK~GaiL~f~ 105 (335)
T PRK13403 93 EENLREGQMLLFS 105 (335)
T ss_pred HhcCCCCCEEEEC
Confidence 8899999877654
No 94
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=99.45 E-value=5.7e-13 Score=111.63 Aligned_cols=111 Identities=14% Similarity=0.062 Sum_probs=94.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
++|||||+|+||..+|+.+...|++|.+||+.... +...+.++...+++++++++||+|++++|..++++.++. .+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~~ 215 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIG--AEE 215 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcC--HHH
Confidence 58999999999999999999999999999986322 233445666666899999999999999998888888873 456
Q ss_pred hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797 83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF 116 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~ 116 (173)
++.+++|.++||++++...+.+.|.+.|....+.
T Consensus 216 l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 249 (525)
T TIGR01327 216 LAKMKKGVIIVNCARGGIIDEAALYEALEEGHVR 249 (525)
T ss_pred HhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCee
Confidence 7889999999999999999999999999876554
No 95
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=99.44 E-value=6.2e-13 Score=104.92 Aligned_cols=111 Identities=16% Similarity=0.149 Sum_probs=93.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
+++||||+|++|+.+|+.+...|++|.+||+...+. .....+.....+++++++.||+|++.+|..+.++.++. .+.
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~--~~~ 219 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLIN--AEE 219 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhcccC--HHH
Confidence 689999999999999999999999999999943332 12223556677899999999999999998888888884 356
Q ss_pred hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797 83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF 116 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~ 116 (173)
+..+++|.++|+++.+...+.+.|.+.+.+..+.
T Consensus 220 ~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~ 253 (324)
T COG0111 220 LAKMKPGAILINAARGGVVDEDALLAALDSGKIA 253 (324)
T ss_pred HhhCCCCeEEEECCCcceecHHHHHHHHHcCCcc
Confidence 7889999999999999988899999999765443
No 96
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.44 E-value=8.6e-13 Score=110.58 Aligned_cols=109 Identities=15% Similarity=0.088 Sum_probs=93.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
++|||||+|+||..+|+.+...|++|.+|||+... +...+.++... ++++++++||+|++++|..++++.++. .+.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~--~~~ 216 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIG--AEE 216 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcC--HHH
Confidence 58999999999999999999999999999996432 23344566665 799999999999999998888888873 457
Q ss_pred hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797 83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT 115 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~ 115 (173)
++.+++|.++|+++.+...+.+.+.+.++...+
T Consensus 217 l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i 249 (526)
T PRK13581 217 LAKMKPGVRIINCARGGIIDEAALAEALKSGKV 249 (526)
T ss_pred HhcCCCCeEEEECCCCceeCHHHHHHHHhcCCe
Confidence 788999999999999999999999999976544
No 97
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.43 E-value=7.6e-12 Score=100.21 Aligned_cols=92 Identities=16% Similarity=0.208 Sum_probs=74.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCC-------CeEEEEcCChH-----HHHHHHHc--------------CCceecChhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSG-------YKVQAFEISDP-----LVDKFFML--------------GGIRSASPMDAG 56 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g-------~~V~~~d~~~~-----~~~~~~~~--------------g~~~~~~~~~~~ 56 (173)
+||+|||.|.||+++|..|.++| ++|.+|.|+++ ..+.+.+. .+..+++..+++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 68999999999999999999987 79999999976 24555432 123467788899
Q ss_pred cCCCEEEEeccChhhhhhhhcCccchhh--cCCCCCEEEEcCCC
Q 044797 57 KDVSALVVVISHVDQIDDIFFGHEGVLK--GLQKGAVIILQSTI 98 (173)
Q Consensus 57 ~~~dvii~~v~~~~~~~~v~~~~~~i~~--~l~~g~~ii~~st~ 98 (173)
+++|+|++++| ++.+++++ +++.+ .++++.++++++.+
T Consensus 92 ~~aDiIvlAVP-sq~l~~vl---~~l~~~~~l~~~~~iIS~aKG 131 (365)
T PTZ00345 92 EDADLLIFVIP-HQFLESVL---SQIKENNNLKKHARAISLTKG 131 (365)
T ss_pred hcCCEEEEEcC-hHHHHHHH---HHhccccccCCCCEEEEEeCC
Confidence 99999999999 78899998 56766 67777788887653
No 98
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=99.42 E-value=1.6e-12 Score=102.56 Aligned_cols=109 Identities=15% Similarity=0.120 Sum_probs=93.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
+++||||.|++|.++|+++...|.+|..|||++. .+...+.+....+ ++++++++|+|++.+|...+.+.++. .+.
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin--~~~ 222 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLIN--AEE 222 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhcC--HHH
Confidence 6899999999999999999999999999999976 2332333455555 99999999999999998888888884 457
Q ss_pred hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797 83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT 115 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~ 115 (173)
++.+++|.++|+++.+...+.+.+.+.|++..+
T Consensus 223 l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i 255 (324)
T COG1052 223 LAKMKPGAILVNTARGGLVDEQALIDALKSGKI 255 (324)
T ss_pred HHhCCCCeEEEECCCccccCHHHHHHHHHhCCc
Confidence 789999999999999999999999999987544
No 99
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.42 E-value=3.2e-12 Score=100.74 Aligned_cols=136 Identities=11% Similarity=0.004 Sum_probs=99.3
Q ss_pred hhHHHHHHHHHCCCeEEEEcCChHH-------HHH-----------HHHcC-------------CceecC--hhhhhcCC
Q 044797 13 YSVDMAASLIRSGYKVQAFEISDPL-------VDK-----------FFMLG-------------GIRSAS--PMDAGKDV 59 (173)
Q Consensus 13 mG~~ia~~l~~~g~~V~~~d~~~~~-------~~~-----------~~~~g-------------~~~~~~--~~~~~~~~ 59 (173)
||..||..++.+|++|++||++++. +++ +.+.| ++.+.+ ..+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 8999999999999999999999842 111 11112 223333 55788999
Q ss_pred CEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHh----cCCceeeece--------eeeeec
Q 044797 60 SALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFT----GNLTFYILER--------MFLISS 127 (173)
Q Consensus 60 dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~----~~g~~~v~~~--------~~~~~g 127 (173)
|+||.|+|++.++++.+++ ++.+.+++++++.+.++ +....++.+.+. ..|.||++.+ +...++
T Consensus 81 D~ViEav~E~~~~K~~~f~--~l~~~~~~~~ilaSntS--~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~~t 156 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALR--WLGRHVDADAIIASTTS--TFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSDAT 156 (314)
T ss_pred CEEEECCcCCHHHHHHHHH--HHHhhCCCCcEEEEccc--cCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCCCC
Confidence 9999999999999988874 58788899988854443 334566777663 3577888765 223356
Q ss_pred CHhhHHHHHHHHHhhCC-ceeecCCC
Q 044797 128 SIDCFTYLFLVKNEFFI-DKKVNISG 152 (173)
Q Consensus 128 ~~~~~~~~~~~~~~~g~-~~~~g~~G 152 (173)
++++++.++++++.+|+ +++++..+
T Consensus 157 ~~e~~~~~~~ll~~lGk~~v~v~d~~ 182 (314)
T PRK08269 157 DPAVVDRLAALLERIGKVPVVCGPSP 182 (314)
T ss_pred CHHHHHHHHHHHHHcCCcEEEecCCC
Confidence 77899999999999996 56777654
No 100
>PLN02928 oxidoreductase family protein
Probab=99.40 E-value=1.9e-12 Score=103.30 Aligned_cols=110 Identities=14% Similarity=0.097 Sum_probs=89.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHH------------HHcCCceecChhhhhcCCCEEEEeccChh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKF------------FMLGGIRSASPMDAGKDVSALVVVISHVD 70 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~------------~~~g~~~~~~~~~~~~~~dvii~~v~~~~ 70 (173)
+++||||+|.||..+|+.+...|++|.+|||+..+.... ..... ...++++++++||+|++++|...
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~ 238 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTK 238 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCCh
Confidence 689999999999999999999999999999974322111 01112 34578999999999999999888
Q ss_pred hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797 71 QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT 115 (173)
Q Consensus 71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~ 115 (173)
.++.++. .+.+..+++|+++||++.+...+.+.|.+.|....+
T Consensus 239 ~T~~li~--~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i 281 (347)
T PLN02928 239 ETAGIVN--DEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHL 281 (347)
T ss_pred HhhcccC--HHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 8887774 467788999999999999988888999999976544
No 101
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.39 E-value=1.5e-11 Score=106.45 Aligned_cols=141 Identities=10% Similarity=0.045 Sum_probs=102.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH-----------HcC-------------CceecChhhhhcC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF-----------MLG-------------GIRSASPMDAGKD 58 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~~ 58 (173)
.+|+|||+|.||..||..++.+|++|+++|++++.+++.. +.| ++.+++. +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5899999999999999999999999999999998765421 111 2345555 45789
Q ss_pred CCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece--------eeeee
Q 044797 59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER--------MFLIS 126 (173)
Q Consensus 59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~--------~~~~~ 126 (173)
||+||.++|.+..+++-++ .++.+.+++++++.+.++.-+. .++.+.+.. .|.||+..+ +..-.
T Consensus 393 aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i--~~la~~~~~p~r~~g~Hff~P~~~~~lVEvv~g~~ 468 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVL--AEVEQKVREDTILASNTSTISI--SLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEK 468 (715)
T ss_pred CCEEEecccCcHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCH--HHHHhhcCCCccEEEEecCCcccccceEEeeCCCC
Confidence 9999999998888887776 4677888888888765554332 244555433 256776544 22234
Q ss_pred cCHhhHHHHHHHHHhhCCc-eee
Q 044797 127 SSIDCFTYLFLVKNEFFID-KKV 148 (173)
Q Consensus 127 g~~~~~~~~~~~~~~~g~~-~~~ 148 (173)
.++++.+.+..++..+|+. +.+
T Consensus 469 T~~~~~~~~~~~~~~lgk~pv~v 491 (715)
T PRK11730 469 TSDETIATVVAYASKMGKTPIVV 491 (715)
T ss_pred CCHHHHHHHHHHHHHhCCceEEe
Confidence 4678889999999999974 344
No 102
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.38 E-value=4.1e-11 Score=95.37 Aligned_cols=91 Identities=18% Similarity=0.206 Sum_probs=73.1
Q ss_pred eEEEEeCChhhHHHHHHHHHCC--------CeEEEEcC-----ChHHHHHHHHc--------C------CceecChhhhh
Q 044797 4 KVGFVGLDEYSVDMAASLIRSG--------YKVQAFEI-----SDPLVDKFFML--------G------GIRSASPMDAG 56 (173)
Q Consensus 4 ~IgiiG~G~mG~~ia~~l~~~g--------~~V~~~d~-----~~~~~~~~~~~--------g------~~~~~~~~~~~ 56 (173)
||+|||.|+||+++|..|..+| ++|.+|.| +++-.+.+.+. + +..++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6899999999999999999999 99999998 44444444321 2 23557788999
Q ss_pred cCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797 57 KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI 98 (173)
Q Consensus 57 ~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~ 98 (173)
+++|+|++++| ++.+++++ +++.+++++++.+++++-+
T Consensus 81 ~~ADiIIlAVP-s~~i~~vl---~~l~~~l~~~~~iVs~tKG 118 (342)
T TIGR03376 81 KGADILVFVIP-HQFLEGIC---KQLKGHVKPNARAISCIKG 118 (342)
T ss_pred hcCCEEEEECC-hHHHHHHH---HHHHhhcCCCCEEEEEeCC
Confidence 99999999999 57788888 5677888888889888653
No 103
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=99.38 E-value=4.7e-12 Score=100.11 Aligned_cols=109 Identities=8% Similarity=0.046 Sum_probs=90.4
Q ss_pred CeEEEEeCChhhHHHHHHHH-HCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDEYSVDMAASLI-RSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~-~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++||||+|++|..+|+.+. ..|.+|..||+.... +.....+++. .+++++++.||+|++++|....++..+. .+
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~--~~ 221 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLFG--AE 221 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccC--HH
Confidence 68999999999999999997 889999999987432 1222335544 4899999999999999998888888873 35
Q ss_pred hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797 82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT 115 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~ 115 (173)
.+..+++|.++|+++.+...+.+.|.+.|+...+
T Consensus 222 ~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i 255 (323)
T PRK15409 222 QFAKMKSSAIFINAGRGPVVDENALIAALQKGEI 255 (323)
T ss_pred HHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 7789999999999999998889999999986544
No 104
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=99.37 E-value=2.6e-11 Score=104.71 Aligned_cols=148 Identities=11% Similarity=0.052 Sum_probs=104.2
Q ss_pred CeEEEEeCChhhHHHHHHHH-HCCCeEEEEcCChHHHHHHH-----------Hc-------------CCceecChhhhhc
Q 044797 3 SKVGFVGLDEYSVDMAASLI-RSGYKVQAFEISDPLVDKFF-----------ML-------------GGIRSASPMDAGK 57 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~-~~g~~V~~~d~~~~~~~~~~-----------~~-------------g~~~~~~~~~~~~ 57 (173)
++|+|||+|.||+.||..++ .+|++|+++|++++.+++.. +. .++.+++. +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 58999999999999999988 58999999999998665421 11 12344555 4678
Q ss_pred CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece--------eeee
Q 044797 58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER--------MFLI 125 (173)
Q Consensus 58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~--------~~~~ 125 (173)
+||+||.++|.+.+++.-++ .++.+.+++++++.+.++.-+. .++.+.+.. .|.||+..+ +..-
T Consensus 384 ~adlViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~l~i--~~la~~~~~p~r~~g~HffnP~~~~~lVEvv~g~ 459 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMV--KDIEQECAAHTIFASNTSSLPI--GQIAAAASRPENVIGLHYFSPVEKMPLVEVIPHA 459 (699)
T ss_pred cCCEEEEeccccHHHHHHHH--HHHHhhCCCCcEEEeCCCCCCH--HHHHHhcCCcccEEEEecCCccccCceEEEeCCC
Confidence 99999999998888877666 4677888888888765544332 244454432 256776554 2223
Q ss_pred ecCHhhHHHHHHHHHhhCCc-eeecCCCchHhHh
Q 044797 126 SSSIDCFTYLFLVKNEFFID-KKVNISGQEIHWG 158 (173)
Q Consensus 126 ~g~~~~~~~~~~~~~~~g~~-~~~g~~Gsg~a~~ 158 (173)
..++++.+.+..++..+|+. +.+. ..|.|+
T Consensus 460 ~T~~~~~~~~~~~~~~~gk~pv~v~---d~pGfi 490 (699)
T TIGR02440 460 GTSEQTIATTVALAKKQGKTPIVVA---DKAGFY 490 (699)
T ss_pred CCCHHHHHHHHHHHHHcCCeEEEEc---cccchH
Confidence 45678899999999999974 4443 345543
No 105
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.37 E-value=3.4e-12 Score=102.66 Aligned_cols=105 Identities=17% Similarity=0.121 Sum_probs=85.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChh----hhhhhhcC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVD----QIDDIFFG 78 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~----~~~~v~~~ 78 (173)
++|||||+|+||+.+++.+...|++|.+||+..... .+.....++++++++||+|++++|... .+...+.
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~- 190 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLD- 190 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCC-
Confidence 589999999999999999999999999999864321 122234578999999999999999654 3555552
Q ss_pred ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCC
Q 044797 79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNL 114 (173)
Q Consensus 79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g 114 (173)
.+.+..+++|+++|+++.+...+.+.+.+.+....
T Consensus 191 -~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~ 225 (381)
T PRK00257 191 -EAFLASLRPGAWLINASRGAVVDNQALREALLSGE 225 (381)
T ss_pred -HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCC
Confidence 35778899999999999999999999999987643
No 106
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.36 E-value=4.7e-12 Score=103.06 Aligned_cols=108 Identities=14% Similarity=0.174 Sum_probs=91.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
+++||||+|++|..+|+.+...|.+|.+||+++... ..++....+++++++.||+|++++|....++..+. .+.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~--~~~ 225 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIG--AEE 225 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHHhhccC--HHH
Confidence 589999999999999999999999999999874321 12344556899999999999999998888888773 457
Q ss_pred hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797 83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF 116 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~ 116 (173)
+..+++|..+|+++.+...+.+.|.+.|....+.
T Consensus 226 l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 259 (409)
T PRK11790 226 LALMKPGAILINASRGTVVDIDALADALKSGHLA 259 (409)
T ss_pred HhcCCCCeEEEECCCCcccCHHHHHHHHHcCCce
Confidence 7889999999999999999999999999875553
No 107
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=99.36 E-value=2.8e-11 Score=104.65 Aligned_cols=141 Identities=11% Similarity=0.060 Sum_probs=102.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-----------c-------------CCceecChhhhhcC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-----------L-------------GGIRSASPMDAGKD 58 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~ 58 (173)
++|+|||+|.||..||..++.+|++|+++|++++.+++..+ . .++.+.+. +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 58999999999999999999999999999999987754211 1 12344455 45789
Q ss_pred CCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece--------eeeee
Q 044797 59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER--------MFLIS 126 (173)
Q Consensus 59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~--------~~~~~ 126 (173)
||+||.+++.+..+++-++ .++.+.+++++++.+.++.-+. .++++.+.. .|.||+... +..-.
T Consensus 393 aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasnTS~l~i--~~ia~~~~~p~r~ig~Hff~P~~~~~lvEvv~g~~ 468 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVL--AEVEQHVREDAILASNTSTISI--SLLAKALKRPENFCGMHFFNPVHRMPLVEVIRGEK 468 (714)
T ss_pred CCEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHhhcCCcccEEEEecCCCcccCceEeecCCCC
Confidence 9999999998888877776 4677888899888765544332 344554433 366776554 22234
Q ss_pred cCHhhHHHHHHHHHhhCCc-eee
Q 044797 127 SSIDCFTYLFLVKNEFFID-KKV 148 (173)
Q Consensus 127 g~~~~~~~~~~~~~~~g~~-~~~ 148 (173)
.++++.+.+..+...+|+. +.+
T Consensus 469 Ts~~~~~~~~~~~~~lgk~pv~v 491 (714)
T TIGR02437 469 SSDETIATVVAYASKMGKTPIVV 491 (714)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEe
Confidence 5678899999999999974 344
No 108
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.36 E-value=7.4e-11 Score=93.80 Aligned_cols=112 Identities=15% Similarity=0.155 Sum_probs=91.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-------------------C-CceecChhhhhcCCCEE
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-------------------G-GIRSASPMDAGKDVSAL 62 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-------------------g-~~~~~~~~~~~~~~dvi 62 (173)
|||.|+|.|++|...+.+|++.||+|+..|.++++++.+... | ...+++.+++++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 699999999999999999999999999999999999875431 1 45678889999999999
Q ss_pred EEeccChhh------hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCC
Q 044797 63 VVVISHVDQ------IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNL 114 (173)
Q Consensus 63 i~~v~~~~~------~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g 114 (173)
|+|||.|.. ++.+....+++.++++..++++.-||+.|.+.+++.+.+.+..
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~ 138 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREEN 138 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhc
Confidence 999986642 2222211156778888779999999999999999999887643
No 109
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=99.36 E-value=1e-11 Score=96.09 Aligned_cols=109 Identities=16% Similarity=0.028 Sum_probs=84.7
Q ss_pred CeEEEEeCChhhHHHHHHHHHC--CCeEE-EEcCChHHHHHHHHc-CC-ceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRS--GYKVQ-AFEISDPLVDKFFML-GG-IRSASPMDAGKDVSALVVVISHVDQIDDIFF 77 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~--g~~V~-~~d~~~~~~~~~~~~-g~-~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~ 77 (173)
+||||||+|.||..+++.|.+. ++++. +|||++++.+.+.+. +. ....+.+++++++|+|++|+|++.+ .++.
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~e~~- 84 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-RAIV- 84 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-HHHH-
Confidence 6899999999999999999863 67775 899999988776554 53 4567899999999999999996544 4443
Q ss_pred CccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797 78 GHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI 118 (173)
Q Consensus 78 ~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v 118 (173)
.+.++.|+.++..+.......+++.+..+++|.++.
T Consensus 85 -----~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~ 120 (271)
T PRK13302 85 -----EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQII 120 (271)
T ss_pred -----HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEE
Confidence 234567887777666656667888888888888753
No 110
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=99.36 E-value=5.2e-12 Score=99.46 Aligned_cols=107 Identities=18% Similarity=0.099 Sum_probs=89.7
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
+++||||+|++|+.+|+.+...|.+|.+|||+.... ..+.. ..+++++++.||+|++++|..+.++..+. .+.
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~--~~~ 218 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLIA--YKE 218 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhcccC--HHH
Confidence 589999999999999999999999999999974321 12333 34799999999999999998888888874 456
Q ss_pred hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797 83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF 116 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~ 116 (173)
++.+++|.++|+++.+...+.+.|.+.|+...+.
T Consensus 219 ~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 219 LKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred HHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE
Confidence 7889999999999999988889999999765443
No 111
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=99.35 E-value=1.6e-11 Score=106.44 Aligned_cols=137 Identities=9% Similarity=-0.015 Sum_probs=101.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-----------c-------------CCceecChhhhhcC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-----------L-------------GGIRSASPMDAGKD 58 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~-------------g~~~~~~~~~~~~~ 58 (173)
.+|+|||+|.||..||..++.+|++|+++|++++.+++..+ . .++.+.+. +.+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhcc
Confidence 58999999999999999999999999999999987654211 1 12344555 45789
Q ss_pred CCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCC-CCHHHHHHHHHHHhc----CCceeeece--------eeee
Q 044797 59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQST-ILPSHMQKLEKTFTG----NLTFYILER--------MFLI 125 (173)
Q Consensus 59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st-~~~~~~~~l~~~l~~----~g~~~v~~~--------~~~~ 125 (173)
||+||.+++.+.+++.-++ .++.+.+++++++.+.++ .++. ++++.+.. .|.||+... +..-
T Consensus 415 aDlViEAv~E~l~~K~~vf--~~l~~~~~~~~ilasNTSsl~i~---~la~~~~~p~r~ig~Hff~P~~~m~LvEvv~g~ 489 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVI--KEVEAVVPPHCIIASNTSALPIK---DIAAVSSRPEKVIGMHYFSPVDKMQLLEIITHD 489 (737)
T ss_pred CCeehhhccccHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCccceEEEeccCCcccCceEEEeCCC
Confidence 9999999998888887776 467788889988875544 4433 44554433 366776654 2223
Q ss_pred ecCHhhHHHHHHHHHhhCCc
Q 044797 126 SSSIDCFTYLFLVKNEFFID 145 (173)
Q Consensus 126 ~g~~~~~~~~~~~~~~~g~~ 145 (173)
..++++.+.+..+...+|+.
T Consensus 490 ~Ts~~~~~~~~~~~~~lgk~ 509 (737)
T TIGR02441 490 GTSKDTLASAVAVGLKQGKV 509 (737)
T ss_pred CCCHHHHHHHHHHHHHCCCe
Confidence 45678889999999999974
No 112
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.34 E-value=5.6e-11 Score=95.29 Aligned_cols=125 Identities=14% Similarity=0.151 Sum_probs=89.6
Q ss_pred CCeEEEEeC-ChhhHHHHHHHHH-CCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCc
Q 044797 2 ASKVGFVGL-DEYSVDMAASLIR-SGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGH 79 (173)
Q Consensus 2 ~~~IgiiG~-G~mG~~ia~~l~~-~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~ 79 (173)
.++|+|||+ |.||..+++.|.+ .+++|+++|++.+ ...++.+.++++|+||+|+| ...+.+++
T Consensus 4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavP-v~~~~~~l--- 68 (370)
T PRK08818 4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAP-IRHTAALI--- 68 (370)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCC-HHHHHHHH---
Confidence 379999999 9999999999996 4889999998521 13356778899999999999 56677777
Q ss_pred cchhhc---CCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec--------------eeeeeec--CHhhHHHHHHHHH
Q 044797 80 EGVLKG---LQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE--------------RMFLISS--SIDCFTYLFLVKN 140 (173)
Q Consensus 80 ~~i~~~---l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~--------------~~~~~~g--~~~~~~~~~~~~~ 140 (173)
+++.+. ++++++|+|.++++....+.+.+ .+..|+.. ..+.+.. ..+..+.++.+++
T Consensus 69 ~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~~~----~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~ 144 (370)
T PRK08818 69 EEYVALAGGRAAGQLWLDVTSIKQAPVAAMLA----SQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCS 144 (370)
T ss_pred HHHhhhhcCCCCCeEEEECCCCcHHHHHHHHh----cCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHH
Confidence 455554 79999999999988665554432 23344431 1333332 2233567788999
Q ss_pred hhCCc
Q 044797 141 EFFID 145 (173)
Q Consensus 141 ~~g~~ 145 (173)
.+|..
T Consensus 145 ~~Ga~ 149 (370)
T PRK08818 145 ALQAE 149 (370)
T ss_pred HcCCE
Confidence 88853
No 113
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=99.34 E-value=2e-11 Score=94.20 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=81.6
Q ss_pred CCeEEEEeCChhhHHHHHHHHHC--CCe-EEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRS--GYK-VQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFF 77 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~--g~~-V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~ 77 (173)
|+||+|||+|.||..+++.+.+. +++ +.++|+++++.+.+.+. +.....+.++++.++|+|++|+|+ ....+..
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~-~~~~~~~- 78 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASV-NAVEEVV- 78 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCCh-HHHHHHH-
Confidence 46999999999999999999876 455 46899999988877653 666778888888899999999984 4445544
Q ss_pred CccchhhcCCCCCEEEEcCC---CCHHHHHHHHHHHhcCCcee
Q 044797 78 GHEGVLKGLQKGAVIILQST---ILPSHMQKLEKTFTGNLTFY 117 (173)
Q Consensus 78 ~~~~i~~~l~~g~~ii~~st---~~~~~~~~l~~~l~~~g~~~ 117 (173)
.+.++.|+.++..+. .++...+++.+..+++|.+.
T Consensus 79 -----~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l 116 (265)
T PRK13304 79 -----PKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKI 116 (265)
T ss_pred -----HHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEE
Confidence 123455666665554 25566778888888887654
No 114
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=99.33 E-value=6.2e-11 Score=102.60 Aligned_cols=141 Identities=11% Similarity=0.044 Sum_probs=102.0
Q ss_pred CeEEEEeCChhhHHHHHHHH-HCCCeEEEEcCChHHHHHHH-----------HcC-------------CceecChhhhhc
Q 044797 3 SKVGFVGLDEYSVDMAASLI-RSGYKVQAFEISDPLVDKFF-----------MLG-------------GIRSASPMDAGK 57 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~-~~g~~V~~~d~~~~~~~~~~-----------~~g-------------~~~~~~~~~~~~ 57 (173)
+||+|||+|.||..||..++ .+|++|+++|++++.+++.. +.| ++.+++. +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999998 88999999999988665421 111 2344555 5678
Q ss_pred CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc----CCceeeece--------eeee
Q 044797 58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG----NLTFYILER--------MFLI 125 (173)
Q Consensus 58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~----~g~~~v~~~--------~~~~ 125 (173)
+||+||.++|.+..+++-++ .++.+.++|++++.+.++.-+. .++++.+.. .|.||+..+ +..-
T Consensus 389 ~aDlViEav~E~~~~K~~v~--~~le~~~~~~~ilasnTS~l~i--~~la~~~~~p~r~ig~Hff~P~~~~~lVEvv~g~ 464 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMV--AEVEQNCAPHTIFASNTSSLPI--GQIAAAAARPEQVIGLHYFSPVEKMPLVEVIPHA 464 (708)
T ss_pred cCCEEeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCCCCH--HHHHHhcCcccceEEEecCCccccCceEEEECCC
Confidence 99999999998888877776 4677889999888766554332 244444432 356766543 2233
Q ss_pred ecCHhhHHHHHHHHHhhCCc-eee
Q 044797 126 SSSIDCFTYLFLVKNEFFID-KKV 148 (173)
Q Consensus 126 ~g~~~~~~~~~~~~~~~g~~-~~~ 148 (173)
..++++.+.+..++..+|+. +.+
T Consensus 465 ~Ts~~~~~~~~~~~~~~gk~pv~v 488 (708)
T PRK11154 465 KTSAETIATTVALAKKQGKTPIVV 488 (708)
T ss_pred CCCHHHHHHHHHHHHHcCCceEEE
Confidence 45678889999999999974 344
No 115
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=99.31 E-value=1.4e-11 Score=87.03 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=68.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH-HHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP-LVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
++|+|||.|..|.+.|++|+.+|.+|++..|..+ ..++..+.|.++. +..|+++.+|+|++.+|| ..-.+++. ++
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD-~~q~~vy~--~~ 80 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPD-EVQPEVYE--EE 80 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-H-HHHHHHHH--HH
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCCh-HHHHHHHH--HH
Confidence 6899999999999999999999999999988866 6677777887764 689999999999999995 45567764 56
Q ss_pred hhhcCCCCCEEEEcC
Q 044797 82 VLKGLQKGAVIILQS 96 (173)
Q Consensus 82 i~~~l~~g~~ii~~s 96 (173)
+.+.|++|++++-..
T Consensus 81 I~p~l~~G~~L~fah 95 (165)
T PF07991_consen 81 IAPNLKPGATLVFAH 95 (165)
T ss_dssp HHHHS-TT-EEEESS
T ss_pred HHhhCCCCCEEEeCC
Confidence 889999999888654
No 116
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=99.30 E-value=1.5e-11 Score=98.72 Aligned_cols=105 Identities=15% Similarity=0.070 Sum_probs=83.7
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhh----hhhhhcC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQ----IDDIFFG 78 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~----~~~v~~~ 78 (173)
++|||||+|+||+.+|+.+...|++|.+||+..... ... ....++++++++||+|++++|-... ....+.
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~- 190 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLAD- 190 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCcccccccccC-
Confidence 689999999999999999999999999999753211 111 1245799999999999999995442 444542
Q ss_pred ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCC
Q 044797 79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNL 114 (173)
Q Consensus 79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g 114 (173)
.+.+..+++|+++||++.+...+.+.|.+.++...
T Consensus 191 -~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~ 225 (378)
T PRK15438 191 -EKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQ 225 (378)
T ss_pred -HHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCC
Confidence 35678899999999999999888899999997643
No 117
>PRK06487 glycerate dehydrogenase; Provisional
Probab=99.29 E-value=2.1e-11 Score=96.34 Aligned_cols=105 Identities=14% Similarity=0.052 Sum_probs=88.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
+++||||+|++|..+|+.+...|.+|.+||+.... . ... ..+++++++.||+|++++|..+.++..+. .+.
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~-----~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~--~~~ 219 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A-----RPD-RLPLDELLPQVDALTLHCPLTEHTRHLIG--ARE 219 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c-----ccc-ccCHHHHHHhCCEEEECCCCChHHhcCcC--HHH
Confidence 58999999999999999999999999999986421 1 112 24789999999999999998888888874 457
Q ss_pred hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797 83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF 116 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~ 116 (173)
+..+++|.++|+++.+...+.+.|.+.|+...+.
T Consensus 220 ~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 253 (317)
T PRK06487 220 LALMKPGALLINTARGGLVDEQALADALRSGHLG 253 (317)
T ss_pred HhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 7899999999999999888889999999865543
No 118
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.29 E-value=6.1e-11 Score=92.38 Aligned_cols=107 Identities=18% Similarity=0.136 Sum_probs=81.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee--cChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS--ASPMDAGKDVSALVVVISHVDQIDDIFFGHE 80 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~ 80 (173)
++++|+|+|.+|..+++.|...|.+|+++||++++.+.+.+.+.... .+..+.++++|+||.++|..- +. .
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~i-i~------~ 224 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALV-LT------A 224 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHH-hC------H
Confidence 58999999999999999999999999999999988777666665433 345677889999999998531 11 2
Q ss_pred chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797 81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL 119 (173)
Q Consensus 81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~ 119 (173)
+..+.++++.+++|+++.. ..+. + +..++.|++.+.
T Consensus 225 ~~l~~~k~~aliIDlas~P-g~td-f-~~Ak~~G~~a~~ 260 (287)
T TIGR02853 225 DVLSKLPKHAVIIDLASKP-GGTD-F-EYAKKRGIKALL 260 (287)
T ss_pred HHHhcCCCCeEEEEeCcCC-CCCC-H-HHHHHCCCEEEE
Confidence 3456788999999998853 3332 2 455667876653
No 119
>PRK06932 glycerate dehydrogenase; Provisional
Probab=99.28 E-value=2.3e-11 Score=95.90 Aligned_cols=106 Identities=13% Similarity=0.047 Sum_probs=88.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
+++||||+|.+|..+|+.+...|.+|..||+..... . .. ...+++++++.||+|++++|..+.++..+. .+.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~--~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~--~~~ 219 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV--C---RE-GYTPFEEVLKQADIVTLHCPLTETTQNLIN--AET 219 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc--c---cc-ccCCHHHHHHhCCEEEEcCCCChHHhcccC--HHH
Confidence 689999999999999999999999999999864311 1 11 134789999999999999998888888774 457
Q ss_pred hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCce
Q 044797 83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTF 116 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~ 116 (173)
+..+++|.++|+++.+...+.+.|.+.|+...+.
T Consensus 220 l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~ 253 (314)
T PRK06932 220 LALMKPTAFLINTGRGPLVDEQALLDALENGKIA 253 (314)
T ss_pred HHhCCCCeEEEECCCccccCHHHHHHHHHcCCcc
Confidence 7889999999999999888889999999865553
No 120
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=99.27 E-value=1.3e-10 Score=86.12 Aligned_cols=132 Identities=14% Similarity=0.125 Sum_probs=90.9
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCceecChhhhh-cCCCEEEEeccChhhhhhhhcCcc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGIRSASPMDAG-KDVSALVVVISHVDQIDDIFFGHE 80 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~v~~~~~ 80 (173)
++|+|+|+|+||..+++.|.+.|++|+++|+++++.+.+.+. +....++ .++. .++|+++.|.......++.+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~~~---- 103 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVINDDTI---- 103 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEecccccccCHHHH----
Confidence 689999999999999999999999999999999988877665 6665544 4444 47999997766432222222
Q ss_pred chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceee-----------eeecCH-hhHHHHHHHHHhhCC
Q 044797 81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMF-----------LISSSI-DCFTYLFLVKNEFFI 144 (173)
Q Consensus 81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~-----------~~~g~~-~~~~~~~~~~~~~g~ 144 (173)
+.++ .++|+...+. |-+..+..+.|+++|+.|+.+... +.++.+ ++.++++++++.+..
T Consensus 104 ---~~l~-~~~v~~~AN~-~~~~~~~~~~L~~~Gi~~~Pd~~~NaGGv~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 174 (200)
T cd01075 104 ---PQLK-AKAIAGAANN-QLADPRHGQMLHERGILYAPDYVVNAGGLINVADELYGGNEARVLAKVEAIYDTLLE 174 (200)
T ss_pred ---HHcC-CCEEEECCcC-ccCCHhHHHHHHHCCCEEeCceeeeCcCceeehhHHhCCcHHHHHHHHHHHHHHHHH
Confidence 3343 4567766553 333256778889999999875311 123332 566677777666543
No 121
>PLN02306 hydroxypyruvate reductase
Probab=99.27 E-value=4.2e-11 Score=96.66 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=88.6
Q ss_pred CeEEEEeCChhhHHHHHHHH-HCCCeEEEEcCChHH-HHHH-HHcC------------CceecChhhhhcCCCEEEEecc
Q 044797 3 SKVGFVGLDEYSVDMAASLI-RSGYKVQAFEISDPL-VDKF-FMLG------------GIRSASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~-~~g~~V~~~d~~~~~-~~~~-~~~g------------~~~~~~~~~~~~~~dvii~~v~ 67 (173)
++|||||+|++|+.+|+.+. ..|.+|.+||+++.. .+.. ...+ .....+++++++.||+|++++|
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~P 245 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPV 245 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCC
Confidence 68999999999999999985 889999999998642 1111 1111 1223579999999999999999
Q ss_pred ChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc
Q 044797 68 HVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT 115 (173)
Q Consensus 68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~ 115 (173)
....++..+. .+.++.+++|+++|+++.+...+.+.|.+.|+...+
T Consensus 246 lt~~T~~lin--~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i 291 (386)
T PLN02306 246 LDKTTYHLIN--KERLALMKKEAVLVNASRGPVIDEVALVEHLKANPM 291 (386)
T ss_pred CChhhhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCe
Confidence 8778888874 457789999999999999988888999999976544
No 122
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=99.25 E-value=1.8e-10 Score=90.66 Aligned_cols=165 Identities=14% Similarity=0.094 Sum_probs=107.9
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCceec-----------ChhhhhcCCCEEEEeccC
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGIRSA-----------SPMDAGKDVSALVVVISH 68 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~~-----------~~~~~~~~~dvii~~v~~ 68 (173)
|.|||+|+|+|.||+-++..|.+.|++|++++|+.++++.+.+. |....+ ...+.....|+||+|++.
T Consensus 1 ~~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~ 80 (305)
T PRK05708 1 MSMTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKA 80 (305)
T ss_pred CCceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCH
Confidence 57899999999999999999999999999999998888887754 332210 111223468999999994
Q ss_pred hhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCC----ceeee-----c--------eeeeeecC-Hh
Q 044797 69 VDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNL----TFYIL-----E--------RMFLISSS-ID 130 (173)
Q Consensus 69 ~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g----~~~v~-----~--------~~~~~~g~-~~ 130 (173)
.++.+++ +.+.+.+.++..++..-++- ...+.+.+.+.+.. +.++. . +.+.+|.. .+
T Consensus 81 -~~~~~al---~~l~~~l~~~t~vv~lQNGv-~~~e~l~~~~~~~~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~ 155 (305)
T PRK05708 81 -YDAEPAV---ASLAHRLAPGAELLLLQNGL-GSQDAVAARVPHARCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNP 155 (305)
T ss_pred -HhHHHHH---HHHHhhCCCCCEEEEEeCCC-CCHHHHHHhCCCCcEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCc
Confidence 5677777 46778888888888776543 23345556654321 11111 0 12233321 23
Q ss_pred hHHHHHHHHHhhCCceeecCCCchHhHhHHhHhhhHhhhh
Q 044797 131 CFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRVMT 170 (173)
Q Consensus 131 ~~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~~~~~~ 170 (173)
..+.+..+|+..|....+-..=....|.++.+|..+..++
T Consensus 156 ~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~lt 195 (305)
T PRK05708 156 TAPAWLDDLREAGIPHEWTVDILTRLWRKLALNCAINPLT 195 (305)
T ss_pred chHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHccccHhH
Confidence 3455666776666555544444667788888887665543
No 123
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=99.25 E-value=6.2e-11 Score=93.11 Aligned_cols=108 Identities=12% Similarity=0.124 Sum_probs=92.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
++|||+|+|++|+.+|++|...|..+.-+.|++.+.+...+.+.. ..+..+.+.++|+|++|.|....+..++. .+.
T Consensus 163 K~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liN--k~~ 239 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLIN--KKF 239 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHhh--HHH
Confidence 689999999999999999999996677778877776666655555 44688999999999999999999999984 468
Q ss_pred hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC
Q 044797 83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGN 113 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~ 113 (173)
..++++|.++++++.+...+-+.+.+.++..
T Consensus 240 ~~~mk~g~vlVN~aRG~iide~~l~eaL~sG 270 (336)
T KOG0069|consen 240 IEKMKDGAVLVNTARGAIIDEEALVEALKSG 270 (336)
T ss_pred HHhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence 8999999999999999988889999998753
No 124
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.23 E-value=3.6e-10 Score=89.16 Aligned_cols=161 Identities=13% Similarity=0.053 Sum_probs=101.6
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-------------cChhhhhcCCCEEEEeccC
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-------------ASPMDAGKDVSALVVVISH 68 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-------------~~~~~~~~~~dvii~~v~~ 68 (173)
.|||+|||+|.||+.+|..|.++|++|+++.|++. +.+.+.|.... .+..+....+|+||+|+|.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~ 82 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKT 82 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecC
Confidence 47999999999999999999999999999999863 44544443211 1122345678999999995
Q ss_pred hhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcC----Cceeeec-------------eeeeee---cC
Q 044797 69 VDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGN----LTFYILE-------------RMFLIS---SS 128 (173)
Q Consensus 69 ~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~----g~~~v~~-------------~~~~~~---g~ 128 (173)
. ++.+++ +.+.+.+.++..++...++- ...+.+.+.+.+. ++.++.. +.+.++ ++
T Consensus 83 ~-~~~~~~---~~l~~~~~~~~~iv~lqNG~-~~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~ 157 (313)
T PRK06249 83 T-ANALLA---PLIPQVAAPDAKVLLLQNGL-GVEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGP 157 (313)
T ss_pred C-ChHhHH---HHHhhhcCCCCEEEEecCCC-CcHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCC
Confidence 4 556666 45666777788777775542 3445666666432 2222111 112222 11
Q ss_pred ------HhhHHHHHHHHHhhCCceeecCCCchHhHhHHhHhhhHhhh
Q 044797 129 ------IDCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRVM 169 (173)
Q Consensus 129 ------~~~~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~~~~~ 169 (173)
.+..+.+..+|+..|....+-..=....|.++.+|..+..+
T Consensus 158 ~~~~~~~~~~~~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~l 204 (313)
T PRK06249 158 AADDGITARVEEGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGL 204 (313)
T ss_pred cccchHHHHHHHHHHHHHhCCCCceeCchHHHHHHhHhheecchhHH
Confidence 23344566677777766555555566677777777655443
No 125
>PRK06141 ornithine cyclodeaminase; Validated
Probab=99.19 E-value=9.1e-11 Score=92.63 Aligned_cols=110 Identities=12% Similarity=0.100 Sum_probs=80.3
Q ss_pred CeEEEEeCChhhHHHHHHHHH-CC-CeEEEEcCChHHHHHHHHc----C--CceecChhhhhcCCCEEEEeccChhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIR-SG-YKVQAFEISDPLVDKFFML----G--GIRSASPMDAGKDVSALVVVISHVDQIDD 74 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~----g--~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 74 (173)
.+|+|||+|.||..+++.+.. .+ .+|++|||++++.+.+.+. + +..+.+.+++++++|+|+.+++.+ +.
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---~p 202 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---EP 202 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---CC
Confidence 589999999999999986654 34 7899999999998887654 4 556678888999999999888854 34
Q ss_pred hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 75 IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 75 v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
++. .+.+++|++|..++ ..+...+++...+.+++..|++..
T Consensus 203 vl~-----~~~l~~g~~i~~ig-~~~~~~~El~~~~~~~a~~~vD~~ 243 (314)
T PRK06141 203 LVR-----GEWLKPGTHLDLVG-NFTPDMRECDDEAIRRASVYVDTR 243 (314)
T ss_pred Eec-----HHHcCCCCEEEeeC-CCCcccccCCHHHHhcCcEEEcCH
Confidence 441 24678898555444 444455666666655666677653
No 126
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=99.16 E-value=7.1e-10 Score=75.23 Aligned_cols=109 Identities=15% Similarity=0.195 Sum_probs=84.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHC--CCeE-EEEcCChHHHHHHHH-cCCceecChhhhhc--CCCEEEEeccChhhhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRS--GYKV-QAFEISDPLVDKFFM-LGGIRSASPMDAGK--DVSALVVVISHVDQIDDIF 76 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~--g~~V-~~~d~~~~~~~~~~~-~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~ 76 (173)
+||++||+|.+|......+.+. +.++ .++|+++++.+.+.+ .++...++.+++++ +.|+|++++|+..+.+.+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~ 80 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK 80 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence 4899999999999999998876 3565 589999999888654 48888899999987 7999999999766654443
Q ss_pred cCccchhhcCCCCCEEEEcC--CCCHHHHHHHHHHHhcCCceee
Q 044797 77 FGHEGVLKGLQKGAVIILQS--TILPSHMQKLEKTFTGNLTFYI 118 (173)
Q Consensus 77 ~~~~~i~~~l~~g~~ii~~s--t~~~~~~~~l~~~l~~~g~~~v 118 (173)
..+..|..++..- +.++.+.+++.+..+++|..+.
T Consensus 81 -------~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~~ 117 (120)
T PF01408_consen 81 -------KALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKVM 117 (120)
T ss_dssp -------HHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCEE
T ss_pred -------HHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEEE
Confidence 3445566665542 3477888999998888777643
No 127
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.15 E-value=1.4e-09 Score=83.67 Aligned_cols=124 Identities=15% Similarity=0.288 Sum_probs=89.0
Q ss_pred HHHHHHHCC--CeEEEEcCChHHHHHHHHcCCcee-cChhhhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEE
Q 044797 17 MAASLIRSG--YKVQAFEISDPLVDKFFMLGGIRS-ASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVII 93 (173)
Q Consensus 17 ia~~l~~~g--~~V~~~d~~~~~~~~~~~~g~~~~-~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii 93 (173)
+|+.|.++| ++|++||++++..+...+.|+... .+..+.++++|+||+|+| ...+.+++ +++.+.++++++++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP-~~~~~~~l---~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVP-VSAIEDVL---EEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S--HHHHHHHH---HHHHCGS-TTSEEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCC-HHHHHHHH---HHhhhhcCCCcEEE
Confidence 578899999 789999999999988878876432 222678899999999999 66788888 57888899999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCceeeec---------------------eeeeeec----CHhhHHHHHHHHHhhCCc
Q 044797 94 LQSTILPSHMQKLEKTFTGNLTFYILE---------------------RMFLISS----SIDCFTYLFLVKNEFFID 145 (173)
Q Consensus 94 ~~st~~~~~~~~l~~~l~~~g~~~v~~---------------------~~~~~~g----~~~~~~~~~~~~~~~g~~ 145 (173)
|.++++....+.+.+.+. .+.+|+.. ..+.+.. +++..+.++.++..+|..
T Consensus 77 Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~ 152 (258)
T PF02153_consen 77 DVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGAR 152 (258)
T ss_dssp E--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-E
T ss_pred EeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCE
Confidence 999999888888888776 56666531 1333332 235678899999999953
No 128
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=99.14 E-value=2.1e-09 Score=84.50 Aligned_cols=162 Identities=16% Similarity=0.133 Sum_probs=108.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce------------ecChhhhhcCCCEEEEeccChh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR------------SASPMDAGKDVSALVVVISHVD 70 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~------------~~~~~~~~~~~dvii~~v~~~~ 70 (173)
|||.|+|+|.||+-++..|.++|++|+.+.|++. .+++.+.|... .....+....+|+||++++. .
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa-~ 78 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKA-Y 78 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecc-c
Confidence 6999999999999999999999988998888876 77777765432 11223445689999999994 5
Q ss_pred hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCc----eeeec-------------eeeee----ecCH
Q 044797 71 QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLT----FYILE-------------RMFLI----SSSI 129 (173)
Q Consensus 71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~----~~v~~-------------~~~~~----~g~~ 129 (173)
++++++ +.+.+.+.+.+.|+..-++- ...+.+.+......+ ..... +.+.+ ++.+
T Consensus 79 q~~~al---~~l~~~~~~~t~vl~lqNG~-g~~e~l~~~~~~~~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 79 QLEEAL---PSLAPLLGPNTVVLFLQNGL-GHEEELRKILPKETVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred cHHHHH---HHhhhcCCCCcEEEEEeCCC-cHHHHHHHhCCcceEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCch
Confidence 678888 57888899998887765543 234466666654411 11110 11111 1122
Q ss_pred hhHHHHHHHHHhhCCceeecCCCchHhHhHHhHhhhHhhhh
Q 044797 130 DCFTYLFLVKNEFFIDKKVNISGQEIHWGYLKINYFIRVMT 170 (173)
Q Consensus 130 ~~~~~~~~~~~~~g~~~~~g~~Gsg~a~~~~~~~~~~~~~~ 170 (173)
+..+.+...|+..+...++-..=....|.+++.|.-|..++
T Consensus 155 ~~~~~i~~~~~~a~~~~~~~~di~~~~w~Kl~~N~~inplt 195 (307)
T COG1893 155 ELVKALAELFKEAGLEVELHPDILAAIWRKLVVNAAINPLT 195 (307)
T ss_pred HHHHHHHHHHHhCCCCeEEcHHHHHHHHHHHHhhhccchhh
Confidence 44556666677777766666555666777777777766543
No 129
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=99.13 E-value=2.1e-10 Score=84.89 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=95.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-----------c------------------CCceecChh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-----------L------------------GGIRSASPM 53 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-----------~------------------g~~~~~~~~ 53 (173)
+.|+|+|.|.||+.||+-.+..|++|+++|++++.+.+..+ . .++.+++..
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~ 91 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVS 91 (298)
T ss_pred cceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHH
Confidence 57999999999999999999999999999999987755322 0 012456777
Q ss_pred hhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEc-CCCCHHHHHHHHHHHhc----CCceeeece-------
Q 044797 54 DAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQ-STILPSHMQKLEKTFTG----NLTFYILER------- 121 (173)
Q Consensus 54 ~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~-st~~~~~~~~l~~~l~~----~g~~~v~~~------- 121 (173)
+++.++|+||.++-.+.+++.-++ .++....++..++... |+... .++...+++ .|.||++..
T Consensus 92 ~~v~dadliiEAivEn~diK~~lF--~~l~~~ak~~~il~tNTSSl~l---t~ia~~~~~~srf~GlHFfNPvPvMKLvE 166 (298)
T KOG2304|consen 92 DAVSDADLIIEAIVENLDIKRKLF--KDLDKIAKSSTILATNTSSLSL---TDIASATQRPSRFAGLHFFNPVPVMKLVE 166 (298)
T ss_pred HhhhhhHHHHHHHHHhHHHHHHHH--HHHHhhcccceEEeecccceeH---HHHHhhccChhhhceeeccCCchhHHHhh
Confidence 888899999999887777776665 3466666676666543 33322 233333332 478888764
Q ss_pred -eeeeecCHhhHHHHHHHHHhhCCc
Q 044797 122 -MFLISSSIDCFTYLFLVKNEFFID 145 (173)
Q Consensus 122 -~~~~~g~~~~~~~~~~~~~~~g~~ 145 (173)
+----.+++.+.....+-+.+|+.
T Consensus 167 Vir~~~TS~eTf~~l~~f~k~~gKt 191 (298)
T KOG2304|consen 167 VIRTDDTSDETFNALVDFGKAVGKT 191 (298)
T ss_pred hhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 111234567777777777888863
No 130
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=99.09 E-value=7.8e-09 Score=77.90 Aligned_cols=144 Identities=16% Similarity=0.098 Sum_probs=109.7
Q ss_pred CCeEEEEeCChh--------------------hHHHHHHHHHCCCeEEEEcCChH-----HHHHHHHcCCceecChhhhh
Q 044797 2 ASKVGFVGLDEY--------------------SVDMAASLIRSGYKVQAFEISDP-----LVDKFFMLGGIRSASPMDAG 56 (173)
Q Consensus 2 ~~~IgiiG~G~m--------------------G~~ia~~l~~~g~~V~~~d~~~~-----~~~~~~~~g~~~~~~~~~~~ 56 (173)
+|||.+.|+|+- |+.||..++.+||+|...|+|.+ ..++..+.|++.+++..+++
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa 80 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAA 80 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhh
Confidence 478999999974 78899999999999999988643 45666777999999999999
Q ss_pred cCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHH-HHHHHHHhcC----Cceeee---------cee
Q 044797 57 KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHM-QKLEKTFTGN----LTFYIL---------ERM 122 (173)
Q Consensus 57 ~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~-~~l~~~l~~~----g~~~v~---------~~~ 122 (173)
+++.+.++-+|-..++-.+. .+|.++++.|++|.+++|++|... ..|+..|+.. |+.-.. .+-
T Consensus 81 ~~~Ei~VLFTPFGk~T~~Ia---rei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h~~ 157 (340)
T COG4007 81 EHGEIHVLFTPFGKATFGIA---REILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQHGH 157 (340)
T ss_pred hcceEEEEecccchhhHHHH---HHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCCce
Confidence 99999999999876777777 578999999999999999988764 4555555422 332110 012
Q ss_pred eeee---------cCHhhHHHHHHHHHhhCCceee
Q 044797 123 FLIS---------SSIDCFTYLFLVKNEFFIDKKV 148 (173)
Q Consensus 123 ~~~~---------g~~~~~~~~~~~~~~~g~~~~~ 148 (173)
..++ ..++..+++..+.++.|+..|+
T Consensus 158 yviagr~t~g~elATeEQi~r~velaes~Gk~~yv 192 (340)
T COG4007 158 YVIAGRSTEGKELATEEQIERCVELAESTGKEVYV 192 (340)
T ss_pred EEEeccCCCceeeccHHHHHHHHHHHHhcCCceEe
Confidence 2222 2245678889999999998876
No 131
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.07 E-value=5.9e-10 Score=86.72 Aligned_cols=73 Identities=19% Similarity=0.213 Sum_probs=62.8
Q ss_pred CeEEEEeCC-hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLD-EYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G-~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
++|+|||.| .||.+|+.+|.++|++|++|+++.. ++++++++||+||++++.+..++..+
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~~~~----- 220 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRLIDADW----- 220 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhcccHhh-----
Confidence 689999996 9999999999999999999987642 67888999999999999876555443
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
+++|+++||++..
T Consensus 221 ----ik~GaiVIDvgin 233 (301)
T PRK14194 221 ----LKPGAVVIDVGIN 233 (301)
T ss_pred ----ccCCcEEEEeccc
Confidence 7899999999864
No 132
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.07 E-value=1.6e-09 Score=84.81 Aligned_cols=107 Identities=14% Similarity=0.099 Sum_probs=80.7
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee--cChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS--ASPMDAGKDVSALVVVISHVDQIDDIFFGHE 80 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~ 80 (173)
+|++|+|.|.+|..+++.|...|.+|+++||++++.+...+.|.... .+..+.++++|+||.++|... +. +
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~-i~------~ 225 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALV-LT------K 225 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhh-hh------H
Confidence 68999999999999999999999999999999988777777776543 345677889999999998432 11 2
Q ss_pred chhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797 81 GVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL 119 (173)
Q Consensus 81 ~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~ 119 (173)
+..+.++++.+++|.++.... +. + +..+++|++.+.
T Consensus 226 ~~l~~~~~g~vIIDla~~pgg-td-~-~~a~~~Gv~~~~ 261 (296)
T PRK08306 226 EVLSKMPPEALIIDLASKPGG-TD-F-EYAEKRGIKALL 261 (296)
T ss_pred HHHHcCCCCcEEEEEccCCCC-cC-e-eehhhCCeEEEE
Confidence 344678899999999875433 22 2 344557776653
No 133
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=99.00 E-value=2e-09 Score=83.35 Aligned_cols=115 Identities=15% Similarity=0.030 Sum_probs=82.9
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc----CCceecChhh-hhcCCCEEEEeccChh--hhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML----GGIRSASPMD-AGKDVSALVVVISHVD--QIDDI 75 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~~~~~~~~-~~~~~dvii~~v~~~~--~~~~v 75 (173)
+++.|+|+|.+|.+++..|...|++|+++||++++.+.+.+. +.....+..+ ...++|+||.|+|... ..+..
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~ 197 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEP 197 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCC
Confidence 578999999999999999999999999999999888776543 2222223333 2357999999999531 22211
Q ss_pred hcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceee
Q 044797 76 FFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMF 123 (173)
Q Consensus 76 ~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~ 123 (173)
.. ....++++.+++|++...+.+ .+.+..+++|.++++.--+
T Consensus 198 ~~----~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vdG~~M 239 (270)
T TIGR00507 198 PV----PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTIDGLGM 239 (270)
T ss_pred CC----CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeCCHHH
Confidence 11 124578899999998876655 5778888889988776533
No 134
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.98 E-value=3e-09 Score=75.11 Aligned_cols=101 Identities=15% Similarity=0.180 Sum_probs=75.3
Q ss_pred EEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecC--------------hhhhhcCCCEEEEeccChh
Q 044797 5 VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSAS--------------PMDAGKDVSALVVVISHVD 70 (173)
Q Consensus 5 IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~--------------~~~~~~~~dvii~~v~~~~ 70 (173)
|.|+|+|.||.-+|..|.+.|++|+++.|++ +.+.+.+.|...... ..+..+..|+||+|++ ..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK-a~ 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK-AY 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS-GG
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEec-cc
Confidence 7899999999999999999999999999999 878777766432211 1235678999999999 45
Q ss_pred hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHh
Q 044797 71 QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFT 111 (173)
Q Consensus 71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~ 111 (173)
++++++ +.+.+.+.+++.|+...++- ...+.+.+.+.
T Consensus 79 ~~~~~l---~~l~~~~~~~t~iv~~qNG~-g~~~~l~~~~~ 115 (151)
T PF02558_consen 79 QLEQAL---QSLKPYLDPNTTIVSLQNGM-GNEEVLAEYFP 115 (151)
T ss_dssp GHHHHH---HHHCTGEETTEEEEEESSSS-SHHHHHHCHST
T ss_pred chHHHH---HHHhhccCCCcEEEEEeCCC-CcHHHHHHHcC
Confidence 677787 46778888887777776542 33456666653
No 135
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.98 E-value=3.7e-09 Score=83.87 Aligned_cols=91 Identities=16% Similarity=0.167 Sum_probs=71.8
Q ss_pred CeEEEEeCChhhHHHHHHHHH--CCCeEEEEcCChHHHHHHHH----cC--CceecChhhhhcCCCEEEEeccChhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIR--SGYKVQAFEISDPLVDKFFM----LG--GIRSASPMDAGKDVSALVVVISHVDQIDD 74 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~--~g~~V~~~d~~~~~~~~~~~----~g--~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 74 (173)
.+++|||+|.+|...++.+.. ...+|.+|||++++.+.+.+ .+ +..+.+.+++++++|+|++|+|... .
T Consensus 129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~---P 205 (325)
T TIGR02371 129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK---P 205 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC---c
Confidence 579999999999998887754 33689999999999877654 25 4567889999999999999998532 3
Q ss_pred hhcCccchhhcCCCCCEEEEcCCCCHH
Q 044797 75 IFFGHEGVLKGLQKGAVIILQSTILPS 101 (173)
Q Consensus 75 v~~~~~~i~~~l~~g~~ii~~st~~~~ 101 (173)
++. .+.+++|.+|..+++..|.
T Consensus 206 ~~~-----~~~l~~g~~v~~vGs~~p~ 227 (325)
T TIGR02371 206 VVK-----ADWVSEGTHINAIGADAPG 227 (325)
T ss_pred Eec-----HHHcCCCCEEEecCCCCcc
Confidence 331 2457999999999887764
No 136
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.97 E-value=1.2e-08 Score=77.96 Aligned_cols=108 Identities=16% Similarity=0.095 Sum_probs=78.1
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHCC---CeE-EEEcCChHHHHHHHHcCCceecChhhh-hcCCCEEEEeccChhhhhhh
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRSG---YKV-QAFEISDPLVDKFFMLGGIRSASPMDA-GKDVSALVVVISHVDQIDDI 75 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~g---~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~-~~~~dvii~~v~~~~~~~~v 75 (173)
|++|||+||||.||..+++.|.+.+ +++ .+++|++++.+.+.+. +..+.+++++ ...+|+|+.|-. ++.+++.
T Consensus 1 ~~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~-~~av~e~ 78 (267)
T PRK13301 1 MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAG-QQAIAEH 78 (267)
T ss_pred CceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCC-HHHHHHH
Confidence 8899999999999999999987643 444 5788998888877654 6788889996 578999999998 6677766
Q ss_pred hcCccchhhcCCCCCEEEEcC--C-CCHHHHHHHHHHHhcCCce
Q 044797 76 FFGHEGVLKGLQKGAVIILQS--T-ILPSHMQKLEKTFTGNLTF 116 (173)
Q Consensus 76 ~~~~~~i~~~l~~g~~ii~~s--t-~~~~~~~~l~~~l~~~g~~ 116 (173)
. . +.|..|.-++-.| . .++...+++.+..++.|.+
T Consensus 79 ~---~---~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~ 116 (267)
T PRK13301 79 A---E---GCLTAGLDMIICSAGALADDALRARLIAAAEAGGAR 116 (267)
T ss_pred H---H---HHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCE
Confidence 5 2 3345454444333 3 2444567777777665544
No 137
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.96 E-value=8.8e-09 Score=79.18 Aligned_cols=132 Identities=11% Similarity=0.092 Sum_probs=82.8
Q ss_pred CCeEEEEeC-ChhhHHHHHHHHHC-CCeEE-EEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797 2 ASKVGFVGL-DEYSVDMAASLIRS-GYKVQ-AFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG 78 (173)
Q Consensus 2 ~~~IgiiG~-G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~ 78 (173)
++||+|+|+ |+||..+++.+.+. ++++. ++|+++++.......++...++++++++++|+|+.++| |....+.+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~-p~~~~~~~-- 77 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT-PEATLENL-- 77 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC-HHHHHHHH--
Confidence 469999998 99999999988764 57764 68988876544433356667788888888999998887 44444443
Q ss_pred ccchhhcCCCCCEEEEcCC-CCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHHhhC
Q 044797 79 HEGVLKGLQKGAVIILQST-ILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNEFF 143 (173)
Q Consensus 79 ~~~i~~~l~~g~~ii~~st-~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~~~g 143 (173)
...++.|..++..++ .+++..+++.+ .. +++..+-.+.+-++-.. ..+.++.....++
T Consensus 78 ----~~al~~G~~vvigttG~s~~~~~~l~~-aa-~~~~v~~s~n~s~g~~~-~~~l~~~aa~~l~ 136 (257)
T PRK00048 78 ----EFALEHGKPLVIGTTGFTEEQLAELEE-AA-KKIPVVIAPNFSIGVNL-LMKLAEKAAKYLG 136 (257)
T ss_pred ----HHHHHcCCCEEEECCCCCHHHHHHHHH-Hh-cCCCEEEECcchHHHHH-HHHHHHHHHHhcC
Confidence 234556666665444 46666677776 32 44443333333222221 2334444445555
No 138
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.95 E-value=1.3e-08 Score=81.79 Aligned_cols=111 Identities=14% Similarity=0.032 Sum_probs=86.8
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHcC---Cc-------eecChhhhhcCCCEEEEeccChh
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFMLG---GI-------RSASPMDAGKDVSALVVVISHVD 70 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~g---~~-------~~~~~~~~~~~~dvii~~v~~~~ 70 (173)
|++|.+||+|.+|+.+|..|+++| .+|++.||+.++..++.+.. ++ -.+...+++++.|+||.|.|...
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~ 80 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV 80 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh
Confidence 578999999999999999999999 89999999999998886652 22 12234577888999999999544
Q ss_pred hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797 71 QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE 120 (173)
Q Consensus 71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~ 120 (173)
. ..++ ...++.|..++|+|...+.. ..+.+...+.|+..+.+
T Consensus 81 ~-~~i~------ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~ 122 (389)
T COG1748 81 D-LTIL------KACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLG 122 (389)
T ss_pred h-HHHH------HHHHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcc
Confidence 3 3444 24567899999999876665 77888888888876544
No 139
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.94 E-value=1.6e-08 Score=81.99 Aligned_cols=101 Identities=16% Similarity=0.078 Sum_probs=78.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
++|+|+|+|.+|..+++.+...|.+|+++|+++.+.......|.... +.+++++.+|++|.++..+..+.. +.
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~vI~~------~~ 268 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKDVIRG------EH 268 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHHHHHH------HH
Confidence 58999999999999999999999999999999987766666676543 567888999999998874433322 24
Q ss_pred hhcCCCCCEEEEcCCCCH-HHHHHHHHHH
Q 044797 83 LKGLQKGAVIILQSTILP-SHMQKLEKTF 110 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~-~~~~~l~~~l 110 (173)
...+++|.++++.+.... .+...+.+.+
T Consensus 269 ~~~mK~GailiN~G~~~~eId~~aL~~~~ 297 (406)
T TIGR00936 269 FENMKDGAIVANIGHFDVEIDVKALEELA 297 (406)
T ss_pred HhcCCCCcEEEEECCCCceeCHHHHHHHH
Confidence 467899999999988654 4456666654
No 140
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.93 E-value=5e-09 Score=81.65 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=61.3
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEc-CChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCcc
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFE-ISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHE 80 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d-~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~ 80 (173)
++|+||| .|.||.+||.+|.+.|++|++|+ |++ +++++++.+|+|++|++.+..++..+
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~~---- 219 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGDW---- 219 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchhe----
Confidence 6899999 99999999999999999999995 654 35788889999999999876554432
Q ss_pred chhhcCCCCCEEEEcCCC
Q 044797 81 GVLKGLQKGAVIILQSTI 98 (173)
Q Consensus 81 ~i~~~l~~g~~ii~~st~ 98 (173)
+++|++++|++..
T Consensus 220 -----lk~GavVIDvGin 232 (296)
T PRK14188 220 -----IKPGATVIDVGIN 232 (296)
T ss_pred -----ecCCCEEEEcCCc
Confidence 7899999999864
No 141
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.91 E-value=1.3e-08 Score=72.33 Aligned_cols=92 Identities=18% Similarity=0.160 Sum_probs=66.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
+++.|+|.|..|..+|+.|+..|..|++++++|-+.-+....|.++. +.+++++.+|++|.++.....+. .+.
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~------~e~ 96 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVIT------GEH 96 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-------HHH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccC------HHH
Confidence 57899999999999999999999999999999987766666687765 68899999999999987433221 134
Q ss_pred hhcCCCCCEEEEcCCCCHH
Q 044797 83 LKGLQKGAVIILQSTILPS 101 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~ 101 (173)
++.+++|.++.+.+....+
T Consensus 97 ~~~mkdgail~n~Gh~d~E 115 (162)
T PF00670_consen 97 FRQMKDGAILANAGHFDVE 115 (162)
T ss_dssp HHHS-TTEEEEESSSSTTS
T ss_pred HHHhcCCeEEeccCcCcee
Confidence 4678999999999876544
No 142
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.90 E-value=2e-08 Score=82.55 Aligned_cols=92 Identities=16% Similarity=0.094 Sum_probs=73.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
++++|+|+|.+|..+|+.+...|.+|+++++++.+.......|+.. .+.+++++.+|+|++++.. +.++. .+.
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt----~~iI~--~e~ 327 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGN----KDIIT--LEH 327 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCc----ccccC--HHH
Confidence 5899999999999999999999999999999987765444456654 3688899999999999753 23331 235
Q ss_pred hhcCCCCCEEEEcCCCCHH
Q 044797 83 LKGLQKGAVIILQSTILPS 101 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~ 101 (173)
.+.+++|.++++++....+
T Consensus 328 ~~~MKpGAiLINvGr~d~E 346 (476)
T PTZ00075 328 MRRMKNNAIVGNIGHFDNE 346 (476)
T ss_pred HhccCCCcEEEEcCCCchH
Confidence 5789999999999987543
No 143
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.88 E-value=3e-08 Score=76.55 Aligned_cols=109 Identities=13% Similarity=0.033 Sum_probs=73.0
Q ss_pred CCeEEEEeCChhhHHHHHHHHHC-CCeE-EEEcCC--hHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRS-GYKV-QAFEIS--DPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFF 77 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~-g~~V-~~~d~~--~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~ 77 (173)
|+||+|||+|+||..+++.+.+. +.++ .++++. .++.......++...++.+++..+.|+|+.|.|.+ ...+..
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~-~~~e~~- 78 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHA-ALKEHV- 78 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHH-HHHHHH-
Confidence 46999999999999999999875 4555 344443 33333222235667778877745699999999954 334443
Q ss_pred CccchhhcCCCCCEEEEcCCC---CHHHHHHHHHHHhcCCcee
Q 044797 78 GHEGVLKGLQKGAVIILQSTI---LPSHMQKLEKTFTGNLTFY 117 (173)
Q Consensus 78 ~~~~i~~~l~~g~~ii~~st~---~~~~~~~l~~~l~~~g~~~ 117 (173)
.+.++.|+.++..++. .++..+++.+..++.|..+
T Consensus 79 -----~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l 116 (265)
T PRK13303 79 -----VPILKAGIDCAVISVGALADEALRERLEQAAEAGGARL 116 (265)
T ss_pred -----HHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEE
Confidence 2456678877776653 3444577788887777753
No 144
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=98.88 E-value=1.5e-08 Score=79.12 Aligned_cols=106 Identities=13% Similarity=0.159 Sum_probs=89.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
+++|++|+|++|+-.|+++...|..|..||+-... +...+.|++.. +.+|++..+|+|-+.+|-.++++.++. ++-
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~-~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin--~~t 222 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPM-ALAEAFGVQLV-SLEEILPKADFITLHVPLTPSTEKLLN--DET 222 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCch-HHHHhccceee-eHHHHHhhcCEEEEccCCCcchhhccC--HHH
Confidence 57999999999999999999999999989864322 34455687765 689999999999999998888888874 456
Q ss_pred hhcCCCCCEEEEcCCCCHHHHHHHHHHHhc
Q 044797 83 LKGLQKGAVIILQSTILPSHMQKLEKTFTG 112 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~ 112 (173)
+..+++|..||+.+.+...+...+.+.+..
T Consensus 223 fA~mKkGVriIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 223 FAKMKKGVRIINVARGGVVDEPALVRALDS 252 (406)
T ss_pred HHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence 678999999999999998888888888864
No 145
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.86 E-value=4.9e-08 Score=77.53 Aligned_cols=135 Identities=10% Similarity=0.042 Sum_probs=93.7
Q ss_pred CCCeEEEEeCChhh-HHHHHHHHHCCC--e-EEEEcCChHHHHHHHHc-CCc-eecChhhhhcC--CCEEEEeccChhhh
Q 044797 1 MASKVGFVGLDEYS-VDMAASLIRSGY--K-VQAFEISDPLVDKFFML-GGI-RSASPMDAGKD--VSALVVVISHVDQI 72 (173)
Q Consensus 1 m~~~IgiiG~G~mG-~~ia~~l~~~g~--~-V~~~d~~~~~~~~~~~~-g~~-~~~~~~~~~~~--~dvii~~v~~~~~~ 72 (173)
|++||||||+|.++ ...+..+.+.+. + +.++|+++++.+.+.+. ++. ..++.++++++ .|+|++++|+..+.
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~ 81 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHA 81 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhH
Confidence 45799999999666 457788887763 3 56889999998887664 664 67789999875 69999999987776
Q ss_pred hhhhcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHH--hhCCc
Q 044797 73 DDIFFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKN--EFFID 145 (173)
Q Consensus 73 ~~v~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~--~~g~~ 145 (173)
+.+. ..+..|+.|+.- -+.+..+.+++.+..++.|+.+......-.. ..+..++.+++ .+|.+
T Consensus 82 e~~~-------~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~---p~~~~~k~li~~g~lG~v 148 (342)
T COG0673 82 ELAL-------AALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFD---PAVQALKELIDSGALGEV 148 (342)
T ss_pred HHHH-------HHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcC---HHHHHHHHHHhcCCcCce
Confidence 5554 467788888876 3456777888888888877765433322111 23445555554 35543
No 146
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=98.85 E-value=2.6e-08 Score=77.95 Aligned_cols=105 Identities=15% Similarity=0.177 Sum_probs=80.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhh-cCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAG-KDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
.+|||||.|+||.-+|..|.++||.+..++|+. --+.....|....+.+.+++ +.+|+|+.|+. ...++.++. .
T Consensus 53 l~IaIIGfGnmGqflAetli~aGh~li~hsRsd-yssaa~~yg~~~ft~lhdlcerhpDvvLlcts-ilsiekila---t 127 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDAGHGLICHSRSD-YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTS-ILSIEKILA---T 127 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhcCceeEecCcch-hHHHHHHhcccccccHHHHHhcCCCEEEEEeh-hhhHHHHHH---h
Confidence 589999999999999999999999999999986 33333445666666666665 57999999997 456777762 2
Q ss_pred hhh-cCCCCCEEEEcCCCCHHHHHHHHHHHhc
Q 044797 82 VLK-GLQKGAVIILQSTILPSHMQKLEKTFTG 112 (173)
Q Consensus 82 i~~-~l~~g~~ii~~st~~~~~~~~l~~~l~~ 112 (173)
... .++.|+++++..+...-....+.+.|.+
T Consensus 128 ypfqrlrrgtlfvdvlSvKefek~lfekYLPk 159 (480)
T KOG2380|consen 128 YPFQRLRRGTLFVDVLSVKEFEKELFEKYLPK 159 (480)
T ss_pred cCchhhccceeEeeeeecchhHHHHHHHhCcc
Confidence 222 3788999999988776666677777653
No 147
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.84 E-value=2.8e-08 Score=78.21 Aligned_cols=91 Identities=9% Similarity=0.098 Sum_probs=71.5
Q ss_pred CeEEEEeCChhhHHHHHHHHH-CC-CeEEEEcCChHHHHHHHHc----CCce-ecChhhhhcCCCEEEEeccChhhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIR-SG-YKVQAFEISDPLVDKFFML----GGIR-SASPMDAGKDVSALVVVISHVDQIDDI 75 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~----g~~~-~~~~~~~~~~~dvii~~v~~~~~~~~v 75 (173)
.+++|||+|.+|...++.+.. .+ .+|.+|||++++.+++.+. +... ..+.+++++++|+|+.|+|.+. .+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~---Pl 202 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT---PV 202 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---ce
Confidence 589999999999999999975 45 4799999999998876653 2232 4678889999999999999653 34
Q ss_pred hcCccchhhcCCCCCEEEEcCCCCHHH
Q 044797 76 FFGHEGVLKGLQKGAVIILQSTILPSH 102 (173)
Q Consensus 76 ~~~~~~i~~~l~~g~~ii~~st~~~~~ 102 (173)
+. ..++||++|..+++..|..
T Consensus 203 ~~------~~~~~g~hi~~iGs~~p~~ 223 (304)
T PRK07340 203 YP------EAARAGRLVVAVGAFTPDM 223 (304)
T ss_pred eC------ccCCCCCEEEecCCCCCCc
Confidence 41 2368999999998877743
No 148
>PLN02494 adenosylhomocysteinase
Probab=98.84 E-value=3.1e-08 Score=81.34 Aligned_cols=100 Identities=17% Similarity=0.125 Sum_probs=76.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
++++|+|+|.+|..+|+.+...|.+|+++++++.+.......|.... +.+++++.+|+++.+......+. .+.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~------~e~ 327 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDIIM------VDH 327 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccchH------HHH
Confidence 58999999999999999999999999999999987655555666543 57888899999998766432221 134
Q ss_pred hhcCCCCCEEEEcCCC-CHHHHHHHHHH
Q 044797 83 LKGLQKGAVIILQSTI-LPSHMQKLEKT 109 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~-~~~~~~~l~~~ 109 (173)
++.++++.++++.+.. ...+...|.+.
T Consensus 328 L~~MK~GAiLiNvGr~~~eID~~aL~~~ 355 (477)
T PLN02494 328 MRKMKNNAIVCNIGHFDNEIDMLGLETY 355 (477)
T ss_pred HhcCCCCCEEEEcCCCCCccCHHHHhhc
Confidence 4679999999999884 34445666665
No 149
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.83 E-value=2.5e-08 Score=78.71 Aligned_cols=91 Identities=15% Similarity=0.137 Sum_probs=65.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHc-CCcee--cChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFML-GGIRS--ASPMDAGKDVSALVVVISHVDQIDDIFFG 78 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g~~~~--~~~~~~~~~~dvii~~v~~~~~~~~v~~~ 78 (173)
++|+|||+|.||..+++.|...| .+|+++||++++.+.+.+. |.... ++..+.+.++|+||.|++.+.. ...+
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~-- 255 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKIV-- 255 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHHH--
Confidence 68999999999999999999866 6899999999988766553 54322 3356777889999999996543 2222
Q ss_pred ccchhhcC-CCCCEEEEcCC
Q 044797 79 HEGVLKGL-QKGAVIILQST 97 (173)
Q Consensus 79 ~~~i~~~l-~~g~~ii~~st 97 (173)
....+.. .++.+++|.+.
T Consensus 256 -~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 256 -ERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred -HHHHhhCCCCCeEEEEeCC
Confidence 1122222 35778999973
No 150
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.83 E-value=4.2e-08 Score=80.06 Aligned_cols=99 Identities=17% Similarity=0.118 Sum_probs=75.9
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
++++|+|+|.+|..+++.+...|.+|+++|+++.+.......|... .+.+++++.+|+||.++..+..+. ...
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~vI~------~~~ 285 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDVIT------AEH 285 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHHHH------HHH
Confidence 5799999999999999999999999999999998876655557654 467888999999999986433222 124
Q ss_pred hhcCCCCCEEEEcCCCCHH-HHHHHHH
Q 044797 83 LKGLQKGAVIILQSTILPS-HMQKLEK 108 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~-~~~~l~~ 108 (173)
...+++|.++++.+....+ ....+.+
T Consensus 286 ~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 286 MEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 5678999999999876542 2344444
No 151
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.82 E-value=9e-09 Score=83.75 Aligned_cols=88 Identities=15% Similarity=0.118 Sum_probs=69.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEE------EEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQ------AFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIF 76 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~------~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~ 76 (173)
++|+|||+|.+|++.|.+|...|++|+ ++|.+.+..+++.+.|..+ .+..++++.||+|++.+|+. .-..+.
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt-~q~~v~ 114 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK-QHSDVV 114 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH-HHHHHH
Confidence 689999999999999999999999998 4444455666666667755 57999999999999999976 333444
Q ss_pred cCccchhhcCCCCCEEEEc
Q 044797 77 FGHEGVLKGLQKGAVIILQ 95 (173)
Q Consensus 77 ~~~~~i~~~l~~g~~ii~~ 95 (173)
+++.+.+++|+.+.-+
T Consensus 115 ---~~i~p~LK~Ga~L~fs 130 (487)
T PRK05225 115 ---RAVQPLMKQGAALGYS 130 (487)
T ss_pred ---HHHHhhCCCCCEEEec
Confidence 5788999998876543
No 152
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.79 E-value=3.5e-08 Score=76.10 Aligned_cols=87 Identities=17% Similarity=0.154 Sum_probs=70.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH-HHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL-VDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
++|+|||+|.-|.+-|.+|+.+|.+|++--|...+ .+++.+.|..+ .+.+|+++.+|+|++.+||.. -.+++. ++
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V-~~v~ea~k~ADvim~L~PDe~-q~~vy~--~~ 94 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKV-YTVEEAAKRADVVMILLPDEQ-QKEVYE--KE 94 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEe-ecHHHHhhcCCEEEEeCchhh-HHHHHH--HH
Confidence 68999999999999999999999998877666544 66777778775 469999999999999999654 467773 36
Q ss_pred hhhcCCCCCEEE
Q 044797 82 VLKGLQKGAVII 93 (173)
Q Consensus 82 i~~~l~~g~~ii 93 (173)
+.+.|++|+.+.
T Consensus 95 I~p~Lk~G~aL~ 106 (338)
T COG0059 95 IAPNLKEGAALG 106 (338)
T ss_pred hhhhhcCCceEE
Confidence 788888877554
No 153
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=98.79 E-value=1.7e-07 Score=72.47 Aligned_cols=131 Identities=13% Similarity=0.141 Sum_probs=84.0
Q ss_pred CeEEEEe-CChhhHHHHHHHHH-CCCeE-EEEcCC-hHHH----HHHHH---cCCceecChhhhhcCCCEEEEeccChhh
Q 044797 3 SKVGFVG-LDEYSVDMAASLIR-SGYKV-QAFEIS-DPLV----DKFFM---LGGIRSASPMDAGKDVSALVVVISHVDQ 71 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~-~g~~V-~~~d~~-~~~~----~~~~~---~g~~~~~~~~~~~~~~dvii~~v~~~~~ 71 (173)
+||+++| +|+||..+++.+.+ .++++ .++||. +++. ..+.. .++...++++++...+|+|+.+++ |..
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~-p~~ 80 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT-PEG 80 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC-hHH
Confidence 6999999 69999999999986 56776 467854 3221 11111 245666788777557999999998 444
Q ss_pred hhhhhcCccchhhcCCCCCEEEE-cCCCCHHHHHHHHHHHhcCCceeeeceeeeeecCH--hhHHHHHHHHH
Q 044797 72 IDDIFFGHEGVLKGLQKGAVIIL-QSTILPSHMQKLEKTFTGNLTFYILERMFLISSSI--DCFTYLFLVKN 140 (173)
Q Consensus 72 ~~~v~~~~~~i~~~l~~g~~ii~-~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~--~~~~~~~~~~~ 140 (173)
..+.+ ...++.|..++. ++..+++..+++.+..++.|+..+-.+.+-+|-.. +..+.+.++++
T Consensus 81 ~~~~~------~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~NfSlGv~ll~~~~~~aa~~l~ 146 (266)
T TIGR00036 81 VLNHL------KFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNFSIGVNLMFKLLEKAAKYLG 146 (266)
T ss_pred HHHHH------HHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHHhcc
Confidence 44443 234566666654 44456777788888887777776665555444332 23344444443
No 154
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.78 E-value=1.5e-07 Score=69.87 Aligned_cols=106 Identities=12% Similarity=0.125 Sum_probs=75.9
Q ss_pred CeEEEEeCChhhHHHHHHHHHC--CCe-EEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRS--GYK-VQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG 78 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~--g~~-V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~ 78 (173)
++|++||||.+|..+.+.+..- .++ +.+||++.++...+.+. +...+++.++.+++.|+++.|.. ++++++...
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~e~~~- 78 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVREYVP- 78 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHHHHhH-
Confidence 4899999999999999887743 344 68999999999876654 55556889999999999999988 677877762
Q ss_pred ccchhhcCCCC--CEEEEcCCC-CHHHHHHHHHHHhcCCc
Q 044797 79 HEGVLKGLQKG--AVIILQSTI-LPSHMQKLEKTFTGNLT 115 (173)
Q Consensus 79 ~~~i~~~l~~g--~~ii~~st~-~~~~~~~l~~~l~~~g~ 115 (173)
+ .|+.| -++++.+.. .+....++.+..+..+.
T Consensus 79 --~---~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~ 113 (255)
T COG1712 79 --K---ILKAGIDVIVMSVGALADEGLRERLRELAKCGGA 113 (255)
T ss_pred --H---HHhcCCCEEEEechhccChHHHHHHHHHHhcCCc
Confidence 2 33443 455666554 34444556555554443
No 155
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=98.78 E-value=4.4e-08 Score=76.95 Aligned_cols=109 Identities=11% Similarity=0.058 Sum_probs=79.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHHc-----C--CceecChhhhhcCCCEEEEeccChhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFML-----G--GIRSASPMDAGKDVSALVVVISHVDQID 73 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~-----g--~~~~~~~~~~~~~~dvii~~v~~~~~~~ 73 (173)
.+++|||+|..|...++.+...- .+|.+|+|++++.+++.+. | +..+++.+++++++|+|+++++...
T Consensus 118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~--- 194 (301)
T PRK06407 118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT--- 194 (301)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC---
Confidence 57999999999999999887532 4799999999998876542 4 4567889999999999999998543
Q ss_pred hhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHH-HHHhcCCceeeec
Q 044797 74 DIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLE-KTFTGNLTFYILE 120 (173)
Q Consensus 74 ~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~-~~l~~~g~~~v~~ 120 (173)
.++. .+.++||.+|..+++..|.. +++. +.+.....-+++.
T Consensus 195 P~~~-----~~~l~pg~hV~aiGs~~p~~-~El~~~~l~~a~~v~vD~ 236 (301)
T PRK06407 195 PIFN-----RKYLGDEYHVNLAGSNYPNR-REAEHSVLNDADIVVTEH 236 (301)
T ss_pred cEec-----HHHcCCCceEEecCCCCCCc-ccCCHHHHHhCCEEEECC
Confidence 3431 24678999999988877743 3333 3343333344553
No 156
>PRK06823 ornithine cyclodeaminase; Validated
Probab=98.78 E-value=5.7e-08 Score=76.71 Aligned_cols=92 Identities=13% Similarity=0.164 Sum_probs=72.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHHc----C--CceecChhhhhcCCCEEEEeccChhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFML----G--GIRSASPMDAGKDVSALVVVISHVDQIDD 74 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~----g--~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 74 (173)
.++++||+|..+...++.+.... .+|.+|||++++.+++.+. + +..+++.+++++++|+|+.|++... .
T Consensus 129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~---P 205 (315)
T PRK06823 129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE---P 205 (315)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC---c
Confidence 57999999999999999887532 4899999999998876542 3 3347889999999999999998543 3
Q ss_pred hhcCccchhhcCCCCCEEEEcCCCCHHH
Q 044797 75 IFFGHEGVLKGLQKGAVIILQSTILPSH 102 (173)
Q Consensus 75 v~~~~~~i~~~l~~g~~ii~~st~~~~~ 102 (173)
++. .+.++||.+|..+++..|..
T Consensus 206 ~~~-----~~~l~~G~hi~~iGs~~p~~ 228 (315)
T PRK06823 206 LLQ-----AEDIQPGTHITAVGADSPGK 228 (315)
T ss_pred eeC-----HHHcCCCcEEEecCCCCccc
Confidence 441 24678999999998877743
No 157
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.76 E-value=8e-08 Score=76.30 Aligned_cols=91 Identities=14% Similarity=0.202 Sum_probs=71.2
Q ss_pred CeEEEEeCChhhHHHHHHHHH-CC-CeEEEEcCChHHHHHHHH-----cCC--ceecChhhhhcCCCEEEEeccChhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIR-SG-YKVQAFEISDPLVDKFFM-----LGG--IRSASPMDAGKDVSALVVVISHVDQID 73 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~-----~g~--~~~~~~~~~~~~~dvii~~v~~~~~~~ 73 (173)
.+++|||+|.+|...+..+.. .+ .+|.+|||++++.+++.+ .++ ...++.+++++++|+|+.|+|...
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~--- 204 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT--- 204 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC---
Confidence 579999999999999887754 44 479999999999887764 143 346778889999999999999542
Q ss_pred hhhcCccchhhcCCCCCEEEEcCCCCHHH
Q 044797 74 DIFFGHEGVLKGLQKGAVIILQSTILPSH 102 (173)
Q Consensus 74 ~v~~~~~~i~~~l~~g~~ii~~st~~~~~ 102 (173)
.++ - +.+++|++|+.+++..|..
T Consensus 205 p~i-----~-~~l~~G~hV~~iGs~~p~~ 227 (325)
T PRK08618 205 PVF-----S-EKLKKGVHINAVGSFMPDM 227 (325)
T ss_pred cch-----H-HhcCCCcEEEecCCCCccc
Confidence 343 2 5679999999998877644
No 158
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.75 E-value=1.1e-07 Score=77.47 Aligned_cols=89 Identities=18% Similarity=0.129 Sum_probs=73.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
.+|+|+|+|.+|..+++.+...|.+|+++|+++.+.+.....|+... +.+++++.+|+||.|+..+..+.. ..
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~i~~------~~ 275 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDIITG------EH 275 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHHHHH------HH
Confidence 58999999999999999999999999999999999888888887544 456788899999999875443332 23
Q ss_pred hhcCCCCCEEEEcCCC
Q 044797 83 LKGLQKGAVIILQSTI 98 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~ 98 (173)
.+.+++|.++++.+..
T Consensus 276 l~~mk~GgilvnvG~~ 291 (413)
T cd00401 276 FEQMKDGAIVCNIGHF 291 (413)
T ss_pred HhcCCCCcEEEEeCCC
Confidence 4678999999988754
No 159
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.74 E-value=2.6e-08 Score=69.29 Aligned_cols=89 Identities=18% Similarity=0.157 Sum_probs=63.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHHHc--C----CceecChhhhhcCCCEEEEeccChhhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFFML--G----GIRSASPMDAGKDVSALVVVISHVDQIDDI 75 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~--g----~~~~~~~~~~~~~~dvii~~v~~~~~~~~v 75 (173)
.++.|||+|.+|.+++..|...|.+ |+++||+.++.+.+.+. + ....++..+.+.++|+||.|+|.+.. .
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~---~ 89 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP---I 89 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST---S
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc---c
Confidence 5899999999999999999999976 99999999999887664 1 12344555678899999999986543 2
Q ss_pred hcCccchhhcCCCC-CEEEEcC
Q 044797 76 FFGHEGVLKGLQKG-AVIILQS 96 (173)
Q Consensus 76 ~~~~~~i~~~l~~g-~~ii~~s 96 (173)
+. ++..+...+. ++++|.+
T Consensus 90 i~--~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 90 IT--EEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp ST--HHHHTTTCHHCSEEEES-
T ss_pred cC--HHHHHHHHhhhhceeccc
Confidence 21 1112222111 4899996
No 160
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.74 E-value=1.7e-07 Score=73.89 Aligned_cols=105 Identities=12% Similarity=0.116 Sum_probs=73.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHC-CCeEE-EEcCCh-HHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRS-GYKVQ-AFEISD-PLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGH 79 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V~-~~d~~~-~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~ 79 (173)
.||+|+|+|+||..+++.+.+. ++++. ++++++ ++.. ...++....+..++..++|+|++|+|+..+.+.+
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~---- 77 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQ---- 77 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHH----
Confidence 5999999999999999999765 67875 689985 4432 1234444456667778899999999976654433
Q ss_pred cchhhcCCCCCEEEEcCCC---CHHHHHHHHHHHhcC-Cce
Q 044797 80 EGVLKGLQKGAVIILQSTI---LPSHMQKLEKTFTGN-LTF 116 (173)
Q Consensus 80 ~~i~~~l~~g~~ii~~st~---~~~~~~~l~~~l~~~-g~~ 116 (173)
.+.+..|..+|++... .|+..+++.+..++. ++.
T Consensus 78 ---~~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs 115 (324)
T TIGR01921 78 ---APYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS 115 (324)
T ss_pred ---HHHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 3457788888888542 245566777766653 443
No 161
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.74 E-value=4.2e-08 Score=75.92 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=61.1
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
++|+|||. |.||.+|+..|.++|++|++|... +.++++.+++||+||++++.+..++..
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~------ 218 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKE------ 218 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHH------
Confidence 68999999 999999999999999999999422 126788899999999999977665443
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
.+++|+++||.+..
T Consensus 219 ---~ik~GavVIDvgin 232 (284)
T PRK14179 219 ---FVKEGAVVIDVGMN 232 (284)
T ss_pred ---HccCCcEEEEecce
Confidence 37899999999764
No 162
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=98.73 E-value=8.8e-08 Score=75.74 Aligned_cols=110 Identities=11% Similarity=0.095 Sum_probs=81.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHH----cC---CceecChhhhhcCCCEEEEeccChhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFM----LG---GIRSASPMDAGKDVSALVVVISHVDQID 73 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~----~g---~~~~~~~~~~~~~~dvii~~v~~~~~~~ 73 (173)
..++|||+|.++...++.+..-- -+|.+|+|++++.+++.. .+ +..+.+.++++++||+|+.|+|+..
T Consensus 131 ~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~--- 207 (330)
T COG2423 131 STLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE--- 207 (330)
T ss_pred cEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---
Confidence 46899999999999999987532 589999999999988764 22 4678889999999999999999654
Q ss_pred hhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797 74 DIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE 120 (173)
Q Consensus 74 ~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~ 120 (173)
.++ ..+.++||.+|...++-.|...+--.+.+.+.+.-+++.
T Consensus 208 Pil-----~~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~ 249 (330)
T COG2423 208 PVL-----KAEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDS 249 (330)
T ss_pred Cee-----cHhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcC
Confidence 444 235688999999998766654333333443333444443
No 163
>PRK10206 putative oxidoreductase; Provisional
Probab=98.72 E-value=5.5e-07 Score=72.04 Aligned_cols=134 Identities=10% Similarity=0.061 Sum_probs=87.0
Q ss_pred CCeEEEEeCChhhHH-HHHHHHH--CCCeEE-EEcCChHHHHHHHHcC-CceecChhhhhc--CCCEEEEeccChhhhhh
Q 044797 2 ASKVGFVGLDEYSVD-MAASLIR--SGYKVQ-AFEISDPLVDKFFMLG-GIRSASPMDAGK--DVSALVVVISHVDQIDD 74 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~-ia~~l~~--~g~~V~-~~d~~~~~~~~~~~~g-~~~~~~~~~~~~--~~dvii~~v~~~~~~~~ 74 (173)
+.||||||+|.++.. .+..+.. .+.++. ++|+++++.+...+.+ +...++.+++++ +.|+|++|+|+..+.+.
T Consensus 1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~ 80 (344)
T PRK10206 1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEY 80 (344)
T ss_pred CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHH
Confidence 358999999998753 3454533 356764 7899986653333344 556778999986 57999999997777655
Q ss_pred hhcCccchhhcCCCCCEEEEcC--CCCHHHHHHHHHHHhcCCceeeeceeeeeecCHhhHHHHHHHHHh--hCCc
Q 044797 75 IFFGHEGVLKGLQKGAVIILQS--TILPSHMQKLEKTFTGNLTFYILERMFLISSSIDCFTYLFLVKNE--FFID 145 (173)
Q Consensus 75 v~~~~~~i~~~l~~g~~ii~~s--t~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~~~~~~~--~g~~ 145 (173)
+. +.++.|+.|+..- +.+....+++.+..+++|+.+......-.. ..+..++.+++. +|.+
T Consensus 81 ~~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~---p~~~~~k~li~~g~iG~i 145 (344)
T PRK10206 81 AK-------RALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFD---SCFLTAKKAIESGKLGEI 145 (344)
T ss_pred HH-------HHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeEC---HHHHHHHHHHHcCCCCCe
Confidence 54 4556777776552 345677888888888888875443322221 234555566543 5543
No 164
>PRK11579 putative oxidoreductase; Provisional
Probab=98.69 E-value=5e-07 Score=72.27 Aligned_cols=106 Identities=13% Similarity=0.131 Sum_probs=77.2
Q ss_pred CeEEEEeCChhhHH-HHHHHHHC-CCeEE-EEcCChHHHHHHHHc-CCceecChhhhhc--CCCEEEEeccChhhhhhhh
Q 044797 3 SKVGFVGLDEYSVD-MAASLIRS-GYKVQ-AFEISDPLVDKFFML-GGIRSASPMDAGK--DVSALVVVISHVDQIDDIF 76 (173)
Q Consensus 3 ~~IgiiG~G~mG~~-ia~~l~~~-g~~V~-~~d~~~~~~~~~~~~-g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~ 76 (173)
.||||||+|.+|.. .+..+.+. +.++. ++|+++++.. .+. +....++.+++++ +.|+|++|+|+..+.+.+.
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~ 82 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAK 82 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence 59999999999984 56666553 57764 7899987654 222 4556788999986 5799999999777665544
Q ss_pred cCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCcee
Q 044797 77 FGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFY 117 (173)
Q Consensus 77 ~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~ 117 (173)
..++.|+.|+.. -+.+....+++.+..++.|+.+
T Consensus 83 -------~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l 118 (346)
T PRK11579 83 -------AALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVL 118 (346)
T ss_pred -------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEE
Confidence 456778887755 2346677788888888877764
No 165
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=98.68 E-value=8e-08 Score=75.90 Aligned_cols=93 Identities=16% Similarity=0.174 Sum_probs=61.9
Q ss_pred CeEEEEeCChhhHHHHHHHHH-CC-CeEEEEcCChHHHHHHHHc----C--CceecChhhhhcCCCEEEEeccChhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIR-SG-YKVQAFEISDPLVDKFFML----G--GIRSASPMDAGKDVSALVVVISHVDQIDD 74 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~----g--~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 74 (173)
.+++|||+|..|...++.+.. .+ .+|.+|+|++++.+++.+. + +..+++.+++++++|+|+.|+|.... ..
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~-~P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTP-AP 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSE-EE
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCC-Cc
Confidence 479999999999999998865 33 4799999999998876552 3 34678899999999999999985431 13
Q ss_pred hhcCccchhhcCCCCCEEEEcCCCCHH
Q 044797 75 IFFGHEGVLKGLQKGAVIILQSTILPS 101 (173)
Q Consensus 75 v~~~~~~i~~~l~~g~~ii~~st~~~~ 101 (173)
++. .+.+++|.+|..+++..|.
T Consensus 208 ~~~-----~~~l~~g~hi~~iGs~~~~ 229 (313)
T PF02423_consen 208 VFD-----AEWLKPGTHINAIGSYTPG 229 (313)
T ss_dssp SB------GGGS-TT-EEEE-S-SSTT
T ss_pred ccc-----HHHcCCCcEEEEecCCCCc
Confidence 441 2468899999999887764
No 166
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.67 E-value=8.6e-08 Score=65.73 Aligned_cols=102 Identities=17% Similarity=0.275 Sum_probs=66.9
Q ss_pred CeEEEEeC-ChhhHHHHHHHHH-CCCeE-EEEcCChH-HH----HHH---HHcCCceecChhhhhcCCCEEEEeccChhh
Q 044797 3 SKVGFVGL-DEYSVDMAASLIR-SGYKV-QAFEISDP-LV----DKF---FMLGGIRSASPMDAGKDVSALVVVISHVDQ 71 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~-~g~~V-~~~d~~~~-~~----~~~---~~~g~~~~~~~~~~~~~~dvii~~v~~~~~ 71 (173)
|||+++|+ |+||+.+++.+.+ .++++ -+++++++ .. ..+ ...++...++.+++++.+|++|-.+. |..
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT~-p~~ 79 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFTN-PDA 79 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcCC-hHH
Confidence 58999999 9999999999998 67775 57788872 11 111 12367778899999999999998884 555
Q ss_pred hhhhhcCccchhhcCCCCCEEEEcCCCCH-HHHHHHHHHHh
Q 044797 72 IDDIFFGHEGVLKGLQKGAVIILQSTILP-SHMQKLEKTFT 111 (173)
Q Consensus 72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~-~~~~~l~~~l~ 111 (173)
+.+.+ ...++.+..++..+|+.. +..+++.+..+
T Consensus 80 ~~~~~------~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 80 VYDNL------EYALKHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp HHHHH------HHHHHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred hHHHH------HHHHhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 55554 123344777777777654 44556665443
No 167
>PRK06046 alanine dehydrogenase; Validated
Probab=98.67 E-value=1.5e-07 Score=74.85 Aligned_cols=90 Identities=16% Similarity=0.181 Sum_probs=69.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHC-C-CeEEEEcCChHHHHHHHHc-----C--CceecChhhhhcCCCEEEEeccChhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRS-G-YKVQAFEISDPLVDKFFML-----G--GIRSASPMDAGKDVSALVVVISHVDQID 73 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~-g-~~V~~~d~~~~~~~~~~~~-----g--~~~~~~~~~~~~~~dvii~~v~~~~~~~ 73 (173)
.+++|||+|.+|...++.+... + .+|.+|||++++.+++.+. + +...++.+++++ +|+|++|+|...
T Consensus 130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~--- 205 (326)
T PRK06046 130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK--- 205 (326)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC---
Confidence 5799999999999999998743 3 3688999999988876552 3 234667888887 999999999532
Q ss_pred hhhcCccchhhcCCCCCEEEEcCCCCHH
Q 044797 74 DIFFGHEGVLKGLQKGAVIILQSTILPS 101 (173)
Q Consensus 74 ~v~~~~~~i~~~l~~g~~ii~~st~~~~ 101 (173)
.++. .+.+++|++|..+++..|.
T Consensus 206 P~~~-----~~~l~~g~hV~~iGs~~p~ 228 (326)
T PRK06046 206 PVVK-----AEWIKEGTHINAIGADAPG 228 (326)
T ss_pred cEec-----HHHcCCCCEEEecCCCCCc
Confidence 3441 2457899999999887764
No 168
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.66 E-value=2e-07 Score=74.12 Aligned_cols=90 Identities=12% Similarity=0.080 Sum_probs=69.1
Q ss_pred CeEEEEeCChhhHHHHHHHHH-CC-CeEEEEcCChHHHHHHHHc-----CCc--eecChhhhhcCCCEEEEeccChhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIR-SG-YKVQAFEISDPLVDKFFML-----GGI--RSASPMDAGKDVSALVVVISHVDQID 73 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~-----g~~--~~~~~~~~~~~~dvii~~v~~~~~~~ 73 (173)
.++++||+|.+|...++.|.. .+ .+|++|+|++++.+.+.+. ++. ..++.+++++++|+|+.|+|...
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~--- 206 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET--- 206 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC---
Confidence 479999999999999999973 56 4699999999998877542 433 35778888999999999998533
Q ss_pred hhhcCccchhhcCCCCCEEEEcCCCCH
Q 044797 74 DIFFGHEGVLKGLQKGAVIILQSTILP 100 (173)
Q Consensus 74 ~v~~~~~~i~~~l~~g~~ii~~st~~~ 100 (173)
.++. .+.+++|.++...++-.|
T Consensus 207 p~i~-----~~~l~~g~~i~~vg~~~p 228 (326)
T TIGR02992 207 PILH-----AEWLEPGQHVTAMGSDAE 228 (326)
T ss_pred cEec-----HHHcCCCcEEEeeCCCCC
Confidence 3331 235789999887766444
No 169
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.65 E-value=6e-07 Score=70.69 Aligned_cols=65 Identities=14% Similarity=0.153 Sum_probs=48.6
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHH----Hc----C--Cce--ecChhhhhcCCCEEEEecc
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFF----ML----G--GIR--SASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~----~~----g--~~~--~~~~~~~~~~~dvii~~v~ 67 (173)
|+||+|||+|.||..++..+...|. +|.++|+++++.+... +. + .+. +.+. +.+++||+||+++.
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 4799999999999999999998875 9999999887654311 11 1 122 2344 55889999999863
No 170
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.65 E-value=1.2e-06 Score=68.93 Aligned_cols=131 Identities=11% Similarity=0.155 Sum_probs=76.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHH----HHc--------CCceecChhhhhcCCCEEEEeccCh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKF----FML--------GGIRSASPMDAGKDVSALVVVISHV 69 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~----~~~--------g~~~~~~~~~~~~~~dvii~~v~~~ 69 (173)
|||+|||+|.||..+|..++.+|+ +|.++|++++..+.. .+. .++.+.+.++ +++||+||++++.|
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 599999999999999999999886 899999976644311 110 1223456655 78999999998743
Q ss_pred hh---------------hhhhhcCccchhhcCCCCCEEEEcCCCCHHH-HHHHHHHHhcCCceeeeceeeeeecCHhhHH
Q 044797 70 DQ---------------IDDIFFGHEGVLKGLQKGAVIILQSTILPSH-MQKLEKTFTGNLTFYILERMFLISSSIDCFT 133 (173)
Q Consensus 70 ~~---------------~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~-~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~ 133 (173)
.. ++++. +.+.++. ++..++..++ |.+ .-...... .| +-..+++.+++..+...
T Consensus 81 ~~~~~sR~~l~~~N~~iv~~i~---~~I~~~~-p~~~iIv~tN--P~di~t~~~~~~--sg--~~~~rviG~g~~lds~R 150 (305)
T TIGR01763 81 RKPGMSREDLLSMNAGIVREVT---GRIMEHS-PNPIIVVVSN--PLDAMTYVAWQK--SG--FPKERVIGQAGVLDSAR 150 (305)
T ss_pred CCcCCCHHHHHHHHHHHHHHHH---HHHHHHC-CCeEEEEecC--cHHHHHHHHHHH--HC--cCHHHEEEeccchHHHH
Confidence 21 11222 2344554 4556665554 322 22222222 12 22234666666655544
Q ss_pred HHHHHHHhhCC
Q 044797 134 YLFLVKNEFFI 144 (173)
Q Consensus 134 ~~~~~~~~~g~ 144 (173)
.-..+-+.++.
T Consensus 151 ~~~~la~~l~v 161 (305)
T TIGR01763 151 FRTFIAMELGV 161 (305)
T ss_pred HHHHHHHHhCc
Confidence 44444455553
No 171
>PRK07589 ornithine cyclodeaminase; Validated
Probab=98.64 E-value=1.7e-07 Score=74.83 Aligned_cols=94 Identities=14% Similarity=0.085 Sum_probs=71.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHHc----C--CceecChhhhhcCCCEEEEeccChhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFML----G--GIRSASPMDAGKDVSALVVVISHVDQIDD 74 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~----g--~~~~~~~~~~~~~~dvii~~v~~~~~~~~ 74 (173)
.+++|||+|..+...++.+..-. .+|.+|+|++++.+++.+. + +..+++.+++++++|+|+.+++... ...
T Consensus 130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~P 208 (346)
T PRK07589 130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NAT 208 (346)
T ss_pred cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CCc
Confidence 57999999999999988776432 5899999999998776542 3 4457889999999999999997432 123
Q ss_pred hhcCccchhhcCCCCCEEEEcCCCCHHH
Q 044797 75 IFFGHEGVLKGLQKGAVIILQSTILPSH 102 (173)
Q Consensus 75 v~~~~~~i~~~l~~g~~ii~~st~~~~~ 102 (173)
++. .+.+++|.+|..+++..|..
T Consensus 209 vl~-----~~~lkpG~hV~aIGs~~p~~ 231 (346)
T PRK07589 209 ILT-----DDMVEPGMHINAVGGDCPGK 231 (346)
T ss_pred eec-----HHHcCCCcEEEecCCCCCCc
Confidence 341 24678999999888776643
No 172
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=98.62 E-value=9.7e-07 Score=70.46 Aligned_cols=109 Identities=12% Similarity=0.109 Sum_probs=85.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHC--CCeE-EEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccC----hhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRS--GYKV-QAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISH----VDQIDD 74 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~--g~~V-~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~----~~~~~~ 74 (173)
.||+|||+ .||...++.+.+. ++++ -++|+++++.+++.+. |+...++.++++++.|++++++|. ..+.+.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~ 82 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL 82 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence 58999999 7899999988875 4665 4789999999887764 777788999999888998888863 233322
Q ss_pred hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797 75 IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL 119 (173)
Q Consensus 75 v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~ 119 (173)
+ .+.++.|+.|+..-....++.+++.+..+++|+.+..
T Consensus 83 a-------~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v 120 (343)
T TIGR01761 83 A-------RALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLV 120 (343)
T ss_pred H-------HHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 2 3467789999888776777888888888888887654
No 173
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.62 E-value=1.9e-07 Score=75.34 Aligned_cols=93 Identities=17% Similarity=0.139 Sum_probs=67.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCce---e---cChhhhhcCCCEEEEeccChh-hhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGIR---S---ASPMDAGKDVSALVVVISHVD-QIDD 74 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~---~---~~~~~~~~~~dvii~~v~~~~-~~~~ 74 (173)
.++.|+|+|.+|...++.+...|.+|+++|+++++.+.+... +... . .++.+.++++|+||.+++.+. ....
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~ 247 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPK 247 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCCc
Confidence 369999999999999999999999999999999988777554 3211 1 234566789999999984321 1122
Q ss_pred hhcCccchhhcCCCCCEEEEcCC
Q 044797 75 IFFGHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 75 v~~~~~~i~~~l~~g~~ii~~st 97 (173)
++. .+....++++.+|+|.+.
T Consensus 248 lit--~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 248 LVS--NSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred CcC--HHHHhcCCCCCEEEEEec
Confidence 221 234466899999999864
No 174
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=98.62 E-value=5.3e-07 Score=80.60 Aligned_cols=112 Identities=9% Similarity=-0.012 Sum_probs=81.8
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCC-Ce-------------EEEEcCChHHHHHHHHc--CC---ce-ecChhhh---hcC
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSG-YK-------------VQAFEISDPLVDKFFML--GG---IR-SASPMDA---GKD 58 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g-~~-------------V~~~d~~~~~~~~~~~~--g~---~~-~~~~~~~---~~~ 58 (173)
++||+|||+|.||...++.|.+.. .+ |.+.|+++++.+++.+. ++ .. ..+.+++ +++
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~ 648 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQ 648 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcC
Confidence 368999999999999999998653 33 89999999988877653 32 22 3455544 367
Q ss_pred CCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
+|+|++|+|...+. .+. ...++.|+.+++.+. .....+++.+..++.|+.++.+.
T Consensus 649 ~DaVIsalP~~~H~-~VA------kaAieaGkHvv~eky-~~~e~~~L~e~Ak~AGV~~m~e~ 703 (1042)
T PLN02819 649 VDVVISLLPASCHA-VVA------KACIELKKHLVTASY-VSEEMSALDSKAKEAGITILCEM 703 (1042)
T ss_pred CCEEEECCCchhhH-HHH------HHHHHcCCCEEECcC-CHHHHHHHHHHHHHcCCEEEECC
Confidence 99999999965442 332 345678889998874 45567788888888888766543
No 175
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.61 E-value=2.3e-07 Score=63.28 Aligned_cols=91 Identities=19% Similarity=0.173 Sum_probs=58.4
Q ss_pred eEEEEe-CChhhHHHHHHHHHC-CCeEEEE-cCChHHHHHHHHcC--Cc-e---ecChhhh-hcCCCEEEEeccChhhhh
Q 044797 4 KVGFVG-LDEYSVDMAASLIRS-GYKVQAF-EISDPLVDKFFMLG--GI-R---SASPMDA-GKDVSALVVVISHVDQID 73 (173)
Q Consensus 4 ~IgiiG-~G~mG~~ia~~l~~~-g~~V~~~-d~~~~~~~~~~~~g--~~-~---~~~~~~~-~~~~dvii~~v~~~~~~~ 73 (173)
||+++| .|.+|..++..+... ++++... +++.++.+.+...+ +. . ..+..++ ..++|+||+|+|+..+.+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence 689999 599999999999884 7777655 65543333333222 11 0 1111222 247999999999765444
Q ss_pred hhhcCccchhhcCCCCCEEEEcCCC
Q 044797 74 DIFFGHEGVLKGLQKGAVIILQSTI 98 (173)
Q Consensus 74 ~v~~~~~~i~~~l~~g~~ii~~st~ 98 (173)
++ ..+...+.+|++++|+|+.
T Consensus 81 -~~---~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 81 -IA---PLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred -HH---HHHHhhhcCCCEEEECCcc
Confidence 33 1234557899999999864
No 176
>PRK08291 ectoine utilization protein EutC; Validated
Probab=98.58 E-value=4.8e-07 Score=72.03 Aligned_cols=90 Identities=12% Similarity=0.076 Sum_probs=67.7
Q ss_pred CeEEEEeCChhhHHHHHHHHH-CC-CeEEEEcCChHHHHHHHHc-----CCc--eecChhhhhcCCCEEEEeccChhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIR-SG-YKVQAFEISDPLVDKFFML-----GGI--RSASPMDAGKDVSALVVVISHVDQID 73 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~-----g~~--~~~~~~~~~~~~dvii~~v~~~~~~~ 73 (173)
++++|||+|.+|...+..+.. .+ .+|.+|+|++++.+.+.+. ++. ..++.+++++++|+|+.++|...
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~--- 209 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE--- 209 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC---
Confidence 589999999999999998875 44 5799999999999887652 443 35778899999999999998532
Q ss_pred hhhcCccchhhcCCCCCEEEEcCCCCH
Q 044797 74 DIFFGHEGVLKGLQKGAVIILQSTILP 100 (173)
Q Consensus 74 ~v~~~~~~i~~~l~~g~~ii~~st~~~ 100 (173)
.++. .+.+++|.++....+..|
T Consensus 210 p~i~-----~~~l~~g~~v~~vg~d~~ 231 (330)
T PRK08291 210 PILK-----AEWLHPGLHVTAMGSDAE 231 (330)
T ss_pred cEec-----HHHcCCCceEEeeCCCCC
Confidence 3331 124678888877655433
No 177
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.56 E-value=1.9e-07 Score=76.72 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=55.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-CCce--ecChhhhhcCCCEEEEeccChh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-GGIR--SASPMDAGKDVSALVVVISHVD 70 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~~--~~~~~~~~~~~dvii~~v~~~~ 70 (173)
++|+|+|+|.||..+++.|...|. +|+++||++++.+.+.+. |... ..+..+.+.++|+||.|++.+.
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~ 254 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPH 254 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCC
Confidence 589999999999999999999997 799999999988766553 4332 2345567789999999998654
No 178
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=98.56 E-value=5.3e-07 Score=70.12 Aligned_cols=115 Identities=10% Similarity=-0.003 Sum_probs=78.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHc-C----CceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFML-G----GIRSASPMDAGKDVSALVVVISHVDQIDDIF 76 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g----~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~ 76 (173)
+++.|+|+|.+|.+++..|...| .+|++++|+.++.+.+.+. + +....+..+.+.++|+||.|+|.+..- ..-
T Consensus 124 k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~-~~~ 202 (278)
T PRK00258 124 KRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG-ELP 202 (278)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC-CCC
Confidence 57899999999999999999999 7899999999998877653 1 111112345667899999999854321 000
Q ss_pred cCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 77 FGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 77 ~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
.. .-....++++.+++|.... |..+ .+.+..++.|.+.++.-
T Consensus 203 ~~-~~~~~~l~~~~~v~DivY~-P~~T-~ll~~A~~~G~~~~~G~ 244 (278)
T PRK00258 203 LP-PLPLSLLRPGTIVYDMIYG-PLPT-PFLAWAKAQGARTIDGL 244 (278)
T ss_pred CC-CCCHHHcCCCCEEEEeecC-CCCC-HHHHHHHHCcCeecCCH
Confidence 00 0012456788999999763 4333 45556667788766543
No 179
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.55 E-value=5.1e-07 Score=66.66 Aligned_cols=63 Identities=13% Similarity=0.052 Sum_probs=50.8
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
|||+|||. |.||..+++.|.++|+.|+ ++++|+||+|+| ...+.+++ ++
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavP-v~~~~~~i---~~ 50 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVP-IDAALNYI---ES 50 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCC-HHHHHHHH---HH
Confidence 58999987 9999999999999999986 368999999999 55566666 22
Q ss_pred hhhcCCCCCEEEEcCCCCHH
Q 044797 82 VLKGLQKGAVIILQSTILPS 101 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~~~~ 101 (173)
+. .+++|.++.+..
T Consensus 51 ~~------~~v~Dv~SvK~~ 64 (197)
T PRK06444 51 YD------NNFVEISSVKWP 64 (197)
T ss_pred hC------CeEEeccccCHH
Confidence 22 378999988764
No 180
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.54 E-value=3.8e-06 Score=66.27 Aligned_cols=67 Identities=19% Similarity=0.184 Sum_probs=50.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHH-HHHc-CC-------ceecChhhhhcCCCEEEEeccCh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDK-FFML-GG-------IRSASPMDAGKDVSALVVVISHV 69 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~-~~~~-g~-------~~~~~~~~~~~~~dvii~~v~~~ 69 (173)
|||+|||+|.+|.+++..|+..| .++.++|+++++.+. ..+. +. ....+..+.+++||++|++.+.+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCCC
Confidence 48999999999999999999999 589999999877653 2211 11 11122335688999999998743
No 181
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=98.53 E-value=4.3e-07 Score=75.65 Aligned_cols=104 Identities=13% Similarity=0.109 Sum_probs=75.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCcee--cChhhhhcCCCEEEEeccChhhhhhhhcCc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGIRS--ASPMDAGKDVSALVVVISHVDQIDDIFFGH 79 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~~--~~~~~~~~~~dvii~~v~~~~~~~~v~~~~ 79 (173)
++++|+|+|.+|.+++..|.+.|++|+++||++++.+.+.+. +.... .+.. .+.++|+||.|+|....+...
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~-~l~~~DiVInatP~g~~~~~~---- 407 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLP-ELHRIDIIINCLPPSVTIPKA---- 407 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhc-ccCCCCEEEEcCCCCCcchhH----
Confidence 579999999999999999999999999999999888776553 21111 1222 256899999999965432111
Q ss_pred cchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 80 EGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 80 ~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
+. .+++|.....+.+. +.+.+++.|.+.++..
T Consensus 408 ------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~G~ 439 (477)
T PRK09310 408 ------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIYGY 439 (477)
T ss_pred ------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEECcH
Confidence 11 37899988665543 6677777888877654
No 182
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.53 E-value=4.3e-07 Score=70.81 Aligned_cols=113 Identities=11% Similarity=-0.011 Sum_probs=77.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-----C-Cce--ecChhhhhcCCCEEEEeccChhhh-
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-----G-GIR--SASPMDAGKDVSALVVVISHVDQI- 72 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-----g-~~~--~~~~~~~~~~~dvii~~v~~~~~~- 72 (173)
+++.|+|+|.+|.+++..|...|. +|+++||+.++.+.+.+. . ... .++..+.++++|+||.|+|..-.-
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~ 207 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGMAKH 207 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCCCC
Confidence 479999999999999999999997 799999999998877542 1 111 223345677899999999843210
Q ss_pred hhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 73 DDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 73 ~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
..... -...++++.++.|..-.... + .+.+..+++|.+.++.-
T Consensus 208 ~~~~~----~~~~l~~~~~v~DivY~P~~-T-~ll~~A~~~G~~~~~G~ 250 (284)
T PRK12549 208 PGLPL----PAELLRPGLWVADIVYFPLE-T-ELLRAARALGCRTLDGG 250 (284)
T ss_pred CCCCC----CHHHcCCCcEEEEeeeCCCC-C-HHHHHHHHCCCeEecCH
Confidence 01000 01346778899998764333 2 45566667888766554
No 183
>PRK06199 ornithine cyclodeaminase; Validated
Probab=98.53 E-value=4.6e-07 Score=73.28 Aligned_cols=90 Identities=11% Similarity=0.050 Sum_probs=67.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHC---CCeEEEEcCChHHHHHHHH----c--C---CceecChhhhhcCCCEEEEeccChh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRS---GYKVQAFEISDPLVDKFFM----L--G---GIRSASPMDAGKDVSALVVVISHVD 70 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~---g~~V~~~d~~~~~~~~~~~----~--g---~~~~~~~~~~~~~~dvii~~v~~~~ 70 (173)
.++++||+|.++...++.+... --+|.+|+|++++.+++.+ . + +..+++.++++++||+|+.|++...
T Consensus 156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~~ 235 (379)
T PRK06199 156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGET 235 (379)
T ss_pred CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCCC
Confidence 5799999999999999998763 2489999999999877543 1 2 4467889999999999999997432
Q ss_pred ---hhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797 71 ---QIDDIFFGHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 71 ---~~~~v~~~~~~i~~~l~~g~~ii~~st 97 (173)
....++. .+.+++|.+|+..++
T Consensus 236 ~~~s~~Pv~~-----~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 236 GDPSTYPYVK-----REWVKPGAFLLMPAA 260 (379)
T ss_pred CCCCcCcEec-----HHHcCCCcEEecCCc
Confidence 1123331 245788988876544
No 184
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.51 E-value=5.8e-07 Score=64.76 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=58.1
Q ss_pred CeEEEEeCChh-hHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDEY-SVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~m-G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
++|.|||.|.| |..+++.|.+.|.+|++++|+. .+..+.+.++|+||++++.+. ++.
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~----ii~---- 102 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG----LVK---- 102 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc----eec----
Confidence 68999999997 8889999999999999999874 245667889999999998653 231
Q ss_pred hhhcCCCCCEEEEcCC
Q 044797 82 VLKGLQKGAVIILQST 97 (173)
Q Consensus 82 i~~~l~~g~~ii~~st 97 (173)
.+.++++.+++|.+.
T Consensus 103 -~~~~~~~~viIDla~ 117 (168)
T cd01080 103 -GDMVKPGAVVIDVGI 117 (168)
T ss_pred -HHHccCCeEEEEccC
Confidence 124677899999975
No 185
>PLN00203 glutamyl-tRNA reductase
Probab=98.51 E-value=2.6e-07 Score=77.41 Aligned_cols=67 Identities=12% Similarity=0.097 Sum_probs=55.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc--CCc----eecChhhhhcCCCEEEEeccCh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML--GGI----RSASPMDAGKDVSALVVVISHV 69 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--g~~----~~~~~~~~~~~~dvii~~v~~~ 69 (173)
.+|+|||+|.||..++++|...|. +|+++||++++.+.+.+. +.. ..++..+++.++|+||.|++.+
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~ 340 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSE 340 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCC
Confidence 589999999999999999999996 799999999999887763 321 2345667788999999998744
No 186
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.47 E-value=3.4e-07 Score=75.08 Aligned_cols=68 Identities=15% Similarity=0.126 Sum_probs=55.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHc-CCc--eecChhhhhcCCCEEEEeccChh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFML-GGI--RSASPMDAGKDVSALVVVISHVD 70 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g~~--~~~~~~~~~~~~dvii~~v~~~~ 70 (173)
.+|+|+|+|.||..+++.|...| .+|+++||++++.+.+.+. +.. ...+..+.+.++|+||.|++.+.
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 58999999999999999999999 7899999999987766543 432 22455677889999999997554
No 187
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=98.44 E-value=1.4e-06 Score=70.63 Aligned_cols=107 Identities=11% Similarity=0.077 Sum_probs=72.3
Q ss_pred EEEEeCChhhHHHHHHHHHCC-C-eEEEEcCChHHHHHHHHc--C--Cce-------ecChhhhhcCCCEEEEeccChhh
Q 044797 5 VGFVGLDEYSVDMAASLIRSG-Y-KVQAFEISDPLVDKFFML--G--GIR-------SASPMDAGKDVSALVVVISHVDQ 71 (173)
Q Consensus 5 IgiiG~G~mG~~ia~~l~~~g-~-~V~~~d~~~~~~~~~~~~--g--~~~-------~~~~~~~~~~~dvii~~v~~~~~ 71 (173)
|.|+|+|.+|+.+++.|.+.+ + +|++.||+.++++++.+. + +.. ..++.++++++|+||.|+|. ..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp-~~ 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP-FF 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG-GG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc-ch
Confidence 789999999999999999887 4 899999999999887652 1 111 11245678899999999984 33
Q ss_pred hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797 72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL 119 (173)
Q Consensus 72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~ 119 (173)
-..++ ...+..|..++|.+. ......++.+..++.|+.++.
T Consensus 80 ~~~v~------~~~i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~ 120 (386)
T PF03435_consen 80 GEPVA------RACIEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALP 120 (386)
T ss_dssp HHHHH------HHHHHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-
T ss_pred hHHHH------HHHHHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEe
Confidence 34443 234567889999433 244566777777777876654
No 188
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.43 E-value=2.1e-06 Score=67.61 Aligned_cols=66 Identities=18% Similarity=0.185 Sum_probs=50.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHHc--------C--CceecChhhhhcCCCEEEEeccC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFML--------G--GIRSASPMDAGKDVSALVVVISH 68 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~~--------g--~~~~~~~~~~~~~~dvii~~v~~ 68 (173)
+||+|||+|.+|++++..|+..| +++.++|+++++.+.+... + ........+.++++|+||+++..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~ 78 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGA 78 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCC
Confidence 48999999999999999999999 6899999998887654321 1 12222333457899999999864
No 189
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=98.42 E-value=2.8e-06 Score=64.19 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=72.4
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEE-EEcC----------ChHHHHHHHHc-C-------CceecChhhh-hcCCCE
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQ-AFEI----------SDPLVDKFFML-G-------GIRSASPMDA-GKDVSA 61 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~-~~d~----------~~~~~~~~~~~-g-------~~~~~~~~~~-~~~~dv 61 (173)
.++|+|.|+|++|+.+++.|.+.|.+|+ +.|. +.+.+.+..+. | .... +.++. -.+||+
T Consensus 31 ~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~Dv 109 (227)
T cd01076 31 GARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDCDI 109 (227)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecccE
Confidence 4789999999999999999999999987 7777 66666554443 2 1111 22232 247999
Q ss_pred EEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 62 LVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 62 ii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
++-|.+.+....+.+ +.++ .-+|-.++..|-+ .+..+.|+++|+.|+.+.
T Consensus 110 lip~a~~~~i~~~~~-------~~l~--a~~I~egAN~~~t-~~a~~~L~~rGi~~~PD~ 159 (227)
T cd01076 110 LIPAALENQITADNA-------DRIK--AKIIVEAANGPTT-PEADEILHERGVLVVPDI 159 (227)
T ss_pred EEecCccCccCHHHH-------hhce--eeEEEeCCCCCCC-HHHHHHHHHCCCEEEChH
Confidence 999987544333333 2232 3344444444544 677888999999998654
No 190
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.41 E-value=8.4e-06 Score=64.63 Aligned_cols=63 Identities=13% Similarity=0.189 Sum_probs=47.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHH--H--HH----cC--Cc--eecChhhhhcCCCEEEEec
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDK--F--FM----LG--GI--RSASPMDAGKDVSALVVVI 66 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~--~--~~----~g--~~--~~~~~~~~~~~~dvii~~v 66 (173)
+||+|||+|.||+.++..+...| .++.++|+++++.+. + .. .+ .. ...+++ .+++||+|+++.
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 59999999999999999999888 689999998865432 1 11 11 12 224444 779999999998
No 191
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=98.41 E-value=1.1e-05 Score=62.23 Aligned_cols=138 Identities=15% Similarity=0.203 Sum_probs=81.4
Q ss_pred EEEEeC-ChhhHHHHHHHHHCC----CeEEEEcCChHHHHHHHH-------c----CCceecChhhhhcCCCEEEEeccC
Q 044797 5 VGFVGL-DEYSVDMAASLIRSG----YKVQAFEISDPLVDKFFM-------L----GGIRSASPMDAGKDVSALVVVISH 68 (173)
Q Consensus 5 IgiiG~-G~mG~~ia~~l~~~g----~~V~~~d~~~~~~~~~~~-------~----g~~~~~~~~~~~~~~dvii~~v~~ 68 (173)
|+|||+ |.||..++..|+..| .++.++|+++++++.... . .+..++++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 689999 999999999999888 789999999877654221 1 122345557889999999996521
Q ss_pred h---------------hhhhhhhcCccchhhcCCCCCEEEEcCCCCHHH-HHHHHHHHhcCCceeeeceeeeeecCHhhH
Q 044797 69 V---------------DQIDDIFFGHEGVLKGLQKGAVIILQSTILPSH-MQKLEKTFTGNLTFYILERMFLISSSIDCF 132 (173)
Q Consensus 69 ~---------------~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~-~~~l~~~l~~~g~~~v~~~~~~~~g~~~~~ 132 (173)
+ +.++++. +++.++. |+..++..++ |.+ .-.+..... .+-..+++.+++ .+..
T Consensus 81 ~~~~g~~r~~~~~~n~~i~~~i~---~~i~~~~-p~a~~i~~tN--P~d~~t~~~~~~s----g~~~~kviG~~~-ld~~ 149 (263)
T cd00650 81 GRKPGMGRLDLLKRNVPIVKEIG---DNIEKYS-PDAWIIVVSN--PVDIITYLVWRYS----GLPKEKVIGLGT-LDPI 149 (263)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHH---HHHHHHC-CCeEEEEecC--cHHHHHHHHHHHh----CCCchhEEEeec-chHH
Confidence 1 1122333 2344444 5666666643 332 222222221 222344666776 4444
Q ss_pred HHHHHHHHhhCCc------eeecCCCc
Q 044797 133 TYLFLVKNEFFID------KKVNISGQ 153 (173)
Q Consensus 133 ~~~~~~~~~~g~~------~~~g~~Gs 153 (173)
..-..+-+.++.. ...|..|.
T Consensus 150 r~~~~la~~l~v~~~~v~~~v~G~hg~ 176 (263)
T cd00650 150 RFRRILAEKLGVDPDDVKVYILGEHGG 176 (263)
T ss_pred HHHHHHHHHhCCCccceEEEEEEcCCC
Confidence 4444444556542 23577666
No 192
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=98.41 E-value=1.1e-06 Score=70.21 Aligned_cols=90 Identities=18% Similarity=0.119 Sum_probs=57.5
Q ss_pred CCCeEEEEeC-ChhhHHHHHHHHHC-CCeEE-EEcCChHHHHHHHH----c-CC--ceecChhh-hhcCCCEEEEeccCh
Q 044797 1 MASKVGFVGL-DEYSVDMAASLIRS-GYKVQ-AFEISDPLVDKFFM----L-GG--IRSASPMD-AGKDVSALVVVISHV 69 (173)
Q Consensus 1 m~~~IgiiG~-G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~----~-g~--~~~~~~~~-~~~~~dvii~~v~~~ 69 (173)
||+||+|+|+ |.+|..+++.|.++ ++++. ++++.. ..+.+.+ . +. ....+.++ ..+++|+|++|+|+.
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~ 79 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSS-AGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHG 79 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccc-cCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcH
Confidence 7899999997 99999999999876 56764 455432 2122221 1 10 01222222 456799999999976
Q ss_pred hhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797 70 DQIDDIFFGHEGVLKGLQKGAVIILQSTI 98 (173)
Q Consensus 70 ~~~~~v~~~~~~i~~~l~~g~~ii~~st~ 98 (173)
.+. ++. ...+..|+.|||.|+-
T Consensus 80 ~~~-~~v------~~a~~aG~~VID~S~~ 101 (343)
T PRK00436 80 VSM-DLA------PQLLEAGVKVIDLSAD 101 (343)
T ss_pred HHH-HHH------HHHHhCCCEEEECCcc
Confidence 543 333 1234578999999864
No 193
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=98.40 E-value=1.3e-05 Score=62.30 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce--------------ecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797 13 YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR--------------SASPMDAGKDVSALVVVISHVDQIDDIFFG 78 (173)
Q Consensus 13 mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~--------------~~~~~~~~~~~dvii~~v~~~~~~~~v~~~ 78 (173)
||+.+|..|.++|++|++++|+ ++.+.+.+.|... .+++++ ....|+||+++|. .++++++
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs-~~~~~~l-- 76 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKA-YQTEEAA-- 76 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccc-hhHHHHH--
Confidence 7999999999999999999997 6677776655321 112233 5679999999995 4677777
Q ss_pred ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHh
Q 044797 79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFT 111 (173)
Q Consensus 79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~ 111 (173)
+.+.+.+.+++.|+...++- ...+.+.+.+.
T Consensus 77 -~~l~~~l~~~~~iv~~qNG~-g~~~~l~~~~~ 107 (293)
T TIGR00745 77 -ALLLPLIGKNTKVLFLQNGL-GHEERLRELLP 107 (293)
T ss_pred -HHhHhhcCCCCEEEEccCCC-CCHHHHHHHhC
Confidence 46778888888888776542 23345555554
No 194
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=98.40 E-value=2.9e-06 Score=66.03 Aligned_cols=90 Identities=14% Similarity=0.089 Sum_probs=64.0
Q ss_pred CeEEEEeCChhhHHHHHHHHH-CCCeEE-EEcCChHHH--HHHHHcCCce-ecChhhhhc--CCCEEEEeccChhhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIR-SGYKVQ-AFEISDPLV--DKFFMLGGIR-SASPMDAGK--DVSALVVVISHVDQIDDI 75 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~-~g~~V~-~~d~~~~~~--~~~~~~g~~~-~~~~~~~~~--~~dvii~~v~~~~~~~~v 75 (173)
.||+|||+|++|..++..+.+ .+.++. ++|+++++. +...+.|+.. ..+.+++++ +.|+|++++|+..+.+..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a 81 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA 81 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 589999999999999877765 456664 688888753 3344457654 446777775 578999999977665444
Q ss_pred hcCccchhhcCCCCCEEEEcCCCC
Q 044797 76 FFGHEGVLKGLQKGAVIILQSTIL 99 (173)
Q Consensus 76 ~~~~~~i~~~l~~g~~ii~~st~~ 99 (173)
. ..++.|+.+++.+...
T Consensus 82 ~-------~al~aGk~VIdekPa~ 98 (285)
T TIGR03215 82 R-------LLAELGKIVIDLTPAA 98 (285)
T ss_pred H-------HHHHcCCEEEECCccc
Confidence 3 3456788888876543
No 195
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.39 E-value=1.8e-06 Score=64.33 Aligned_cols=138 Identities=15% Similarity=0.084 Sum_probs=88.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHH-----------HHHcC--------------CceecChhhhhc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDK-----------FFMLG--------------GIRSASPMDAGK 57 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~-----------~~~~g--------------~~~~~~~~~~~~ 57 (173)
-||+|+|.|.+|+++|..+++.|++|..||..++.+.. +.+.| +..++++.|+.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk 83 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVK 83 (313)
T ss_pred cceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHh
Confidence 58999999999999999999999999999998876532 22222 124778899999
Q ss_pred CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCC--HHHH-HHHHHHHhcCCceeeece--------eeeee
Q 044797 58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTIL--PSHM-QKLEKTFTGNLTFYILER--------MFLIS 126 (173)
Q Consensus 58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~--~~~~-~~l~~~l~~~g~~~v~~~--------~~~~~ 126 (173)
++=.|-.|+|.+-+++.-++ .++.+.+ ...+|+.+||.. |... ..+...-...-.|-++.+ +..--
T Consensus 84 ~Ai~iQEcvpE~L~lkk~ly--~qlD~i~-d~~tIlaSSTSt~mpS~~s~gL~~k~q~lvaHPvNPPyfiPLvElVPaPw 160 (313)
T KOG2305|consen 84 GAIHIQECVPEDLNLKKQLY--KQLDEIA-DPTTILASSTSTFMPSKFSAGLINKEQCLVAHPVNPPYFIPLVELVPAPW 160 (313)
T ss_pred hhhhHHhhchHhhHHHHHHH--HHHHHhc-CCceEEeccccccChHHHhhhhhhhhheeEecCCCCCcccchheeccCCC
Confidence 99889999997777665553 2343334 455666555433 3321 122211111112222222 22223
Q ss_pred cCHhhHHHHHHHHHhhC
Q 044797 127 SSIDCFTYLFLVKNEFF 143 (173)
Q Consensus 127 g~~~~~~~~~~~~~~~g 143 (173)
.+++..++...++..+|
T Consensus 161 Tsp~tVdrt~~lM~sig 177 (313)
T KOG2305|consen 161 TSPDTVDRTRALMRSIG 177 (313)
T ss_pred CChhHHHHHHHHHHHhC
Confidence 45677888888888888
No 196
>PRK04148 hypothetical protein; Provisional
Probab=98.39 E-value=5.2e-06 Score=57.38 Aligned_cols=90 Identities=20% Similarity=0.210 Sum_probs=67.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-----ecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-----SASPMDAGKDVSALVVVISHVDQIDDIFF 77 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-----~~~~~~~~~~~dvii~~v~~~~~~~~v~~ 77 (173)
++|..||+| -|..+|..|.+.|++|++.|.+++..+.+.+.+... .+...++-+++|+|...=|++.-.+.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~- 95 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFIL- 95 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHH-
Confidence 579999999 999999999999999999999999998887776432 2334466789999999999665555554
Q ss_pred CccchhhcCCCCCEEEEcCC
Q 044797 78 GHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 78 ~~~~i~~~l~~g~~ii~~st 97 (173)
++...+..+-+|.-.+.
T Consensus 96 ---~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 96 ---ELAKKINVPLIIKPLSG 112 (134)
T ss_pred ---HHHHHcCCCEEEEcCCC
Confidence 45555544444444443
No 197
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.39 E-value=1.2e-06 Score=66.13 Aligned_cols=67 Identities=21% Similarity=0.234 Sum_probs=52.7
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH--cCCce---ec----Chhhh-hcCCCEEEEeccCh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM--LGGIR---SA----SPMDA-GKDVSALVVVISHV 69 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~--~g~~~---~~----~~~~~-~~~~dvii~~v~~~ 69 (173)
|++.|+|+|++|..+|+.|.+.|++|.++|+++++.++..+ ..... .. .+.++ ++++|+++.++.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d 77 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND 77 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence 58999999999999999999999999999999999888444 33221 11 22333 56899999999854
No 198
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=98.38 E-value=6.3e-06 Score=70.04 Aligned_cols=108 Identities=14% Similarity=0.099 Sum_probs=71.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec---Chhhh-----hcCCCEEEEeccChhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA---SPMDA-----GKDVSALVVVISHVDQIDD 74 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~---~~~~~-----~~~~dvii~~v~~~~~~~~ 74 (173)
.+|-|+|+|++|+.+++.|.+.|++++++|+|+++.+.+++.|..... +..+. ++++|.++.+++++.....
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~ 497 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE 497 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence 468899999999999999999999999999999999999887654211 11222 4589999999987654433
Q ss_pred hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797 75 IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL 119 (173)
Q Consensus 75 v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~ 119 (173)
+.. .+.+. .++..++...+ +++.. +.+++.|..++.
T Consensus 498 iv~---~~~~~-~~~~~iiar~~-~~~~~----~~l~~~Gad~vv 533 (558)
T PRK10669 498 IVA---SAREK-RPDIEIIARAH-YDDEV----AYITERGANQVV 533 (558)
T ss_pred HHH---HHHHH-CCCCeEEEEEC-CHHHH----HHHHHcCCCEEE
Confidence 432 12222 34444443322 34332 334556776544
No 199
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.38 E-value=1.1e-05 Score=63.57 Aligned_cols=111 Identities=14% Similarity=0.188 Sum_probs=82.5
Q ss_pred CeEEEEeCChhhHHHHHHHH---HCCCeEE-EEcCChHHHHHHHHc-CC---ceecChhhhhcC--CCEEEEeccChhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLI---RSGYKVQ-AFEISDPLVDKFFML-GG---IRSASPMDAGKD--VSALVVVISHVDQI 72 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~---~~g~~V~-~~d~~~~~~~~~~~~-g~---~~~~~~~~~~~~--~dvii~~v~~~~~~ 72 (173)
-|+||+|+|.|+.-.++.|. ..+++|+ +.+|+.+++..+.+. ++ +...+.++++++ +|+|.+..|.+++.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH~ 86 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQHY 86 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccHH
Confidence 58999999999999999885 3467764 779998888877664 44 466789999876 49999999999887
Q ss_pred hhhhcCccchhhcCCCCCEEEEc--CCCCHHHHHHHHHHHhcCCceeeec
Q 044797 73 DDIFFGHEGVLKGLQKGAVIILQ--STILPSHMQKLEKTFTGNLTFYILE 120 (173)
Q Consensus 73 ~~v~~~~~~i~~~l~~g~~ii~~--st~~~~~~~~l~~~l~~~g~~~v~~ 120 (173)
+-+.+ .+..++.+.-. -.......+++.+..+.+|+.+.+.
T Consensus 87 evv~l-------~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 87 EVVML-------ALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred HHHHH-------HHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEee
Confidence 66652 23445554433 2345667788888888889766554
No 200
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.36 E-value=3.6e-06 Score=58.95 Aligned_cols=65 Identities=17% Similarity=0.206 Sum_probs=50.2
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHH-------c---CCceecChhhhhcCCCEEEEecc
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFM-------L---GGIRSASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~-------~---g~~~~~~~~~~~~~~dvii~~v~ 67 (173)
|||+|||+ |++|+.++..|...+ .++.++|+++++++.... . .........+.++++|+|+++.-
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 69999999 999999999998877 479999999877654211 1 12334456677899999999873
No 201
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.36 E-value=1.3e-06 Score=70.95 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=56.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHc-CCc--eecChhhhhcCCCEEEEeccCh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFML-GGI--RSASPMDAGKDVSALVVVISHV 69 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-g~~--~~~~~~~~~~~~dvii~~v~~~ 69 (173)
.++.|||+|.||.-.|++|.++| .+|++.||+.++.+.+.+. |.. ..++..+.+.++|+||+++..|
T Consensus 179 ~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~ 249 (414)
T COG0373 179 KKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAP 249 (414)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCC
Confidence 57999999999999999999999 6899999999999887764 533 3455667889999999998644
No 202
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=98.35 E-value=1.1e-06 Score=71.80 Aligned_cols=68 Identities=6% Similarity=-0.015 Sum_probs=56.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-C-Cce--ecChhhhhcCCCEEEEeccChh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-G-GIR--SASPMDAGKDVSALVVVISHVD 70 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g-~~~--~~~~~~~~~~~dvii~~v~~~~ 70 (173)
++|.|||+|.||..+++.|...|. ++++++|+.++.+.+.+. + ... .++..+.+.++|+||.|++.|.
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~ 254 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLE 254 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCC
Confidence 589999999999999999999995 799999999998887764 3 222 2445677889999999998654
No 203
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.35 E-value=1.9e-05 Score=62.61 Aligned_cols=63 Identities=16% Similarity=0.221 Sum_probs=47.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHH--HH---HH---cC----CceecChhhhhcCCCEEEEec
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVD--KF---FM---LG----GIRSASPMDAGKDVSALVVVI 66 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~--~~---~~---~g----~~~~~~~~~~~~~~dvii~~v 66 (173)
+||+|||+|.||+.++..++..|. ++.++|+++++.+ .+ .. .+ +..+.+. +.+++||+||++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 589999999999999999998895 8999999988542 11 11 11 1223444 5689999999976
No 204
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=98.33 E-value=9.2e-06 Score=69.62 Aligned_cols=108 Identities=11% Similarity=0.056 Sum_probs=73.9
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee---cChhhh-----hcCCCEEEEeccChhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS---ASPMDA-----GKDVSALVVVISHVDQIDD 74 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~---~~~~~~-----~~~~dvii~~v~~~~~~~~ 74 (173)
.+|-|+|+|++|+.+++.|.++|+++++.|.|+++.+.+++.|.... .+..+. ++++|.++++++++.....
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~ 480 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMK 480 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHH
Confidence 57889999999999999999999999999999999999988775431 111222 5689999999998765545
Q ss_pred hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797 75 IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL 119 (173)
Q Consensus 75 v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~ 119 (173)
+.. .+. ...|+..++.... ++. -.+.+.+.|+.++.
T Consensus 481 i~~---~~r-~~~p~~~IiaRa~-~~~----~~~~L~~~Ga~~vv 516 (601)
T PRK03659 481 IVE---LCQ-QHFPHLHILARAR-GRV----EAHELLQAGVTQFS 516 (601)
T ss_pred HHH---HHH-HHCCCCeEEEEeC-CHH----HHHHHHhCCCCEEE
Confidence 541 222 3344444443332 232 23455566776653
No 205
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=98.32 E-value=2e-05 Score=60.07 Aligned_cols=131 Identities=13% Similarity=0.188 Sum_probs=81.6
Q ss_pred CCCeEEEEeC-ChhhHHHHHHHHHCC-CeE-EEEcCChHHH-----HHHH---HcCCceecChhhhhcCCCEEEEeccCh
Q 044797 1 MASKVGFVGL-DEYSVDMAASLIRSG-YKV-QAFEISDPLV-----DKFF---MLGGIRSASPMDAGKDVSALVVVISHV 69 (173)
Q Consensus 1 m~~~IgiiG~-G~mG~~ia~~l~~~g-~~V-~~~d~~~~~~-----~~~~---~~g~~~~~~~~~~~~~~dvii~~v~~~ 69 (173)
|++||+|.|+ |+||+.+.+.+.+.. +++ -+++|.++.. ..+. ..++...+++.....++|++|=-+. |
T Consensus 1 ~~iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT~-P 79 (266)
T COG0289 1 SMIKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFTT-P 79 (266)
T ss_pred CCceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECCC-c
Confidence 6889999998 999999999998765 554 5778776532 1121 2356666677777788999997665 3
Q ss_pred hhhhhhhcCccchhhcCCCC-CEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeeeeecCH--hhHHHHHHHHH
Q 044797 70 DQIDDIFFGHEGVLKGLQKG-AVIILQSTILPSHMQKLEKTFTGNLTFYILERMFLISSSI--DCFTYLFLVKN 140 (173)
Q Consensus 70 ~~~~~v~~~~~~i~~~l~~g-~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~~~g~~--~~~~~~~~~~~ 140 (173)
..+...+ +. .+..+ .++|-++..+++..+.+.+..+. +..+-.+.|-+|-+- ...+++.++|+
T Consensus 80 ~~~~~~l----~~--~~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~NfSiGvnll~~l~~~aak~l~ 145 (266)
T COG0289 80 EATLENL----EF--ALEHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAPNFSLGVNLLFKLAEQAAKVLD 145 (266)
T ss_pred hhhHHHH----HH--HHHcCCCeEEECCCCCHHHHHHHHHHHhh--CCEEEeccchHHHHHHHHHHHHHHHhcC
Confidence 4444443 11 12233 46666666777878888887765 444444444443332 23344444444
No 206
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=98.32 E-value=6.1e-06 Score=64.55 Aligned_cols=90 Identities=16% Similarity=0.088 Sum_probs=63.7
Q ss_pred CeEEEEeCChhhHHHHHHHHHC-CCeE-EEEcCChHHH--HHHHHcCCce-ecChhhhhc-----CCCEEEEeccChhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRS-GYKV-QAFEISDPLV--DKFFMLGGIR-SASPMDAGK-----DVSALVVVISHVDQI 72 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V-~~~d~~~~~~--~~~~~~g~~~-~~~~~~~~~-----~~dvii~~v~~~~~~ 72 (173)
.||||||+|++|..++..+.+. +.++ .++|+++++. +...+.|+.. ..+.+++++ +.|+|+.++|...+.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H~ 84 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAHV 84 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHHH
Confidence 5899999999999988877754 4566 4788887643 3445567765 467787774 588999999965544
Q ss_pred hhhhcCccchhhcCCCCCEEEEcCCCC
Q 044797 73 DDIFFGHEGVLKGLQKGAVIILQSTIL 99 (173)
Q Consensus 73 ~~v~~~~~~i~~~l~~g~~ii~~st~~ 99 (173)
+... ...+.|+.++|.+...
T Consensus 85 e~a~-------~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 85 RHAA-------KLREAGIRAIDLTPAA 104 (302)
T ss_pred HHHH-------HHHHcCCeEEECCccc
Confidence 3332 3456788888887543
No 207
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=98.31 E-value=1.8e-06 Score=58.49 Aligned_cols=106 Identities=16% Similarity=0.158 Sum_probs=70.9
Q ss_pred CeEEEEe----CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797 3 SKVGFVG----LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG 78 (173)
Q Consensus 3 ~~IgiiG----~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~ 78 (173)
++|+||| -++.|..+.++|.++|++|+..+++.+.+ .|.....+..|.-...|++++++| +..+.+++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~-~~~~~~~v-- 72 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVP-PDKVPEIV-- 72 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S--HHHHHHHH--
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcC-HHHHHHHH--
Confidence 4799999 79999999999999999999998776432 266677788874478999999999 66677777
Q ss_pred ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeecee
Q 044797 79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERM 122 (173)
Q Consensus 79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~ 122 (173)
+++.+. ..+.+++..+ ...+++.+.++++|++++...+
T Consensus 73 -~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp~C 110 (116)
T PF13380_consen 73 -DEAAAL-GVKAVWLQPG----AESEELIEAAREAGIRVIGPNC 110 (116)
T ss_dssp -HHHHHH-T-SEEEE-TT----S--HHHHHHHHHTT-EEEESS-
T ss_pred -HHHHHc-CCCEEEEEcc----hHHHHHHHHHHHcCCEEEeCCc
Confidence 344332 3445666555 3456778888889998876543
No 208
>PRK06270 homoserine dehydrogenase; Provisional
Probab=98.31 E-value=5.5e-06 Score=66.27 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=71.6
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHC----------CCeE-EEEcCC----------hHHHHHHHHc-CC-c------eecC
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRS----------GYKV-QAFEIS----------DPLVDKFFML-GG-I------RSAS 51 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~----------g~~V-~~~d~~----------~~~~~~~~~~-g~-~------~~~~ 51 (173)
|+.+|+++|+|.||+.+++.|.+. +.+| .++|++ .+++..+.+. +. . ...+
T Consensus 1 m~i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (341)
T PRK06270 1 MEMKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEIS 80 (341)
T ss_pred CeEEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCC
Confidence 788999999999999999998765 3454 466753 3333333322 21 1 1236
Q ss_pred hhhhhc--CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCC-HHHHHHHHHHHhcCCceee
Q 044797 52 PMDAGK--DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTIL-PSHMQKLEKTFTGNLTFYI 118 (173)
Q Consensus 52 ~~~~~~--~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~-~~~~~~l~~~l~~~g~~~v 118 (173)
..++++ +.|+|+.|+|+..+..+... +-+...+..|+.++..+... .....++.+..+++|+.+.
T Consensus 81 ~~ell~~~~~DvVvd~T~s~~~~~~~a~--~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~ 148 (341)
T PRK06270 81 GLEVIRSVDADVVVEATPTNIETGEPAL--SHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFR 148 (341)
T ss_pred HHHHhhccCCCEEEECCcCcccccchHH--HHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEE
Confidence 677763 68999999985433211110 11245677899988764311 1234677777777777654
No 209
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=98.31 E-value=3.5e-06 Score=62.01 Aligned_cols=91 Identities=13% Similarity=-0.056 Sum_probs=64.0
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-----CCc--e--ecC---hhhhhcCCCEEEEeccCh
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-----GGI--R--SAS---PMDAGKDVSALVVVISHV 69 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~--~--~~~---~~~~~~~~dvii~~v~~~ 69 (173)
+++.++|. |.+|..+++.|.+.|++|++++|+.++.+.+.+. +.. . ..+ ..++++++|+||.++|.+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence 57999985 9999999999999999999999999888766542 211 1 112 236678999999999865
Q ss_pred hhhhhhhcCccchhhcCCCCCEEEEcCCCC
Q 044797 70 DQIDDIFFGHEGVLKGLQKGAVIILQSTIL 99 (173)
Q Consensus 70 ~~~~~v~~~~~~i~~~l~~g~~ii~~st~~ 99 (173)
.... . ......+++.+++|.....
T Consensus 109 ~~~~-~-----~~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 109 VELL-E-----KLAWAPKPLAVAADVNAVP 132 (194)
T ss_pred ceec-h-----hhhcccCceeEEEEccCCC
Confidence 4311 1 1122344578899986543
No 210
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.30 E-value=5.1e-06 Score=68.33 Aligned_cols=110 Identities=16% Similarity=0.228 Sum_probs=73.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHC--------C--CeE-EEEcCChHHHHHHHHcCCceecChhhhhc--CCCEEEEeccCh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRS--------G--YKV-QAFEISDPLVDKFFMLGGIRSASPMDAGK--DVSALVVVISHV 69 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~--------g--~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~~dvii~~v~~~ 69 (173)
.||+++|+|.+|..+++.|.++ | .++ .++|+++++.+.+...+...+++.+++++ +.|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 6899999999999998877543 2 343 57799887654322223456678888885 479999998743
Q ss_pred hhhhhhhcCccchhhcCCCCCEEEEcCC-CCHHHHHHHHHHHhcCCceee
Q 044797 70 DQIDDIFFGHEGVLKGLQKGAVIILQST-ILPSHMQKLEKTFTGNLTFYI 118 (173)
Q Consensus 70 ~~~~~v~~~~~~i~~~l~~g~~ii~~st-~~~~~~~~l~~~l~~~g~~~v 118 (173)
....+. +...++.|+.++.... ......+++.+..+++|+.+.
T Consensus 84 ~~~~~~------~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~ 127 (426)
T PRK06349 84 EPAREL------ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLY 127 (426)
T ss_pred hHHHHH------HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEE
Confidence 222222 3356788999986543 112334677777777887654
No 211
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=98.29 E-value=5.9e-06 Score=66.09 Aligned_cols=89 Identities=12% Similarity=0.004 Sum_probs=59.1
Q ss_pred CCeEEEEeCChhhHHHHHHHHHC-CCeEE-EEcCChHHHHHHHH-c------------------CCceecChhhhhcCCC
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRS-GYKVQ-AFEISDPLVDKFFM-L------------------GGIRSASPMDAGKDVS 60 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~-~------------------g~~~~~~~~~~~~~~d 60 (173)
|+||||+|+|+||..+++.+.++ ++++. ++|++++....+.. . ++....+..+++.++|
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vD 80 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKAD 80 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCC
Confidence 46999999999999999988764 46765 56766654443322 1 2334456677778899
Q ss_pred EEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797 61 ALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 61 vii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st 97 (173)
+|+.|+|.... .+.. ..+++.|+.+|+.++
T Consensus 81 VVIdaT~~~~~-~e~a------~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 81 IVVDATPGGVG-AKNK------ELYEKAGVKAIFQGG 110 (341)
T ss_pred EEEECCCchhh-HHHH------HHHHHCCCEEEEcCC
Confidence 99999985433 3332 234455677776655
No 212
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=98.29 E-value=2.3e-05 Score=62.05 Aligned_cols=65 Identities=20% Similarity=0.192 Sum_probs=48.9
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHHH----c-----CCceecChhhhhcCCCEEEEecc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKFFM----L-----GGIRSASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~----~-----g~~~~~~~~~~~~~~dvii~~v~ 67 (173)
+||+|||+|.+|+.++..|...|. ++.++|++.++++.... . ......+..+.+++||+||++.-
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 589999999999999999998886 89999998877643211 1 12223334456899999999764
No 213
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=98.29 E-value=2.1e-05 Score=52.81 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=53.8
Q ss_pred EEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec----Chh---h-hhcCCCEEEEeccChhhhhhh
Q 044797 5 VGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA----SPM---D-AGKDVSALVVVISHVDQIDDI 75 (173)
Q Consensus 5 IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~----~~~---~-~~~~~dvii~~v~~~~~~~~v 75 (173)
|-|+|+|.+|..+++.|.+.+.+|++.|+++++.+.+.+.+..... +.. + -+++++.++++++++.....+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~ 79 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLI 79 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHH
Confidence 5689999999999999999777999999999999999988754321 111 1 256899999999866443333
No 214
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=98.28 E-value=7.9e-06 Score=68.23 Aligned_cols=92 Identities=16% Similarity=0.211 Sum_probs=68.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee--c---------------C----------hhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS--A---------------S----------PMDA 55 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~---------------~----------~~~~ 55 (173)
.|+.|+|+|.+|...++.+...|..|+++|+++++.+.+...|.... + + ..+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~ 244 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQ 244 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999999888777665430 0 0 2344
Q ss_pred hcCCCEEEEec--cChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797 56 GKDVSALVVVI--SHVDQIDDIFFGHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 56 ~~~~dvii~~v--~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st 97 (173)
.+++|+||.++ |.... ..++. ++..+.+++|.+|+|.+.
T Consensus 245 ~~~~DIVI~TalipG~~a-P~Lit--~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 245 AKEVDIIITTALIPGKPA-PKLIT--EEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred hCCCCEEEECcccCCCCC-Ceeeh--HHHHhhCCCCCEEEEeee
Confidence 67899999988 21111 11222 234578999999999975
No 215
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=98.28 E-value=8.2e-06 Score=67.37 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=54.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH-cCCcee-------cChhhh-hcCCCEEEEeccChh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM-LGGIRS-------ASPMDA-GKDVSALVVVISHVD 70 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~-~g~~~~-------~~~~~~-~~~~dvii~~v~~~~ 70 (173)
|+|.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+ .+.... ....++ ++++|.++++++++.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 48999999999999999999999999999999999988866 443321 122333 678999999998643
No 216
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=98.26 E-value=1e-05 Score=60.71 Aligned_cols=109 Identities=16% Similarity=0.070 Sum_probs=70.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCCh----------HHHHHHHHcC-Ccee-----cChhhh-hcCCCEEEE
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISD----------PLVDKFFMLG-GIRS-----ASPMDA-GKDVSALVV 64 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~----------~~~~~~~~~g-~~~~-----~~~~~~-~~~~dvii~ 64 (173)
++|.|.|+|++|+.+++.|.+.|. .|.+.|.+. +.++...+.+ +... .+.++. -.+||+++.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlip 103 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAP 103 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccEEee
Confidence 689999999999999999999987 567889888 6666554442 2111 111222 237999999
Q ss_pred eccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 65 VISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 65 ~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
|.+.+....+.. +.++ -++|+.. ...|-+. +..+.|+++|+.|+.+.
T Consensus 104 aA~~~~i~~~~a-------~~l~-a~~V~e~-AN~p~t~-~a~~~L~~~Gi~v~Pd~ 150 (217)
T cd05211 104 CALGNVIDLENA-------KKLK-AKVVAEG-ANNPTTD-EALRILHERGIVVAPDI 150 (217)
T ss_pred ccccCccChhhH-------hhcC-ccEEEeC-CCCCCCH-HHHHHHHHCCcEEEChH
Confidence 988553322222 2232 2344444 3334343 67788888999887653
No 217
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.26 E-value=1.7e-06 Score=71.14 Aligned_cols=66 Identities=17% Similarity=0.222 Sum_probs=51.1
Q ss_pred CeEEEEeCChhhHHHHH--HH----HHCCCeEEEEcCChHHHHHHHH--------cC----CceecChhhhhcCCCEEEE
Q 044797 3 SKVGFVGLDEYSVDMAA--SL----IRSGYKVQAFEISDPLVDKFFM--------LG----GIRSASPMDAGKDVSALVV 64 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~--~l----~~~g~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~~dvii~ 64 (173)
+||+|||.|.||.+.+. .+ ...|++|.+||+++++++.... .+ +..+++..+++++||+|++
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 48999999999998655 34 3457899999999988765432 11 2346677889999999999
Q ss_pred eccC
Q 044797 65 VISH 68 (173)
Q Consensus 65 ~v~~ 68 (173)
+++.
T Consensus 81 ai~~ 84 (423)
T cd05297 81 TIQV 84 (423)
T ss_pred eeEe
Confidence 9983
No 218
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.26 E-value=5.3e-06 Score=65.20 Aligned_cols=62 Identities=13% Similarity=0.167 Sum_probs=45.6
Q ss_pred EEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHH----HHHc----C--Cc--eecChhhhhcCCCEEEEecc
Q 044797 5 VGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDK----FFML----G--GI--RSASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 5 IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~----~~~~----g--~~--~~~~~~~~~~~~dvii~~v~ 67 (173)
|+|||+|.||..++..++..|. +|+++|+++++.+. +.+. + .+ .+.+. +.+++||+||++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence 6899999999999999998876 99999999875432 1111 1 12 22343 55899999999873
No 219
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=98.26 E-value=1.8e-05 Score=58.78 Aligned_cols=109 Identities=17% Similarity=0.163 Sum_probs=68.9
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh-HHHHHHHHcC-Cceec-C-hhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD-PLVDKFFMLG-GIRSA-S-PMDAGKDVSALVVVISHVDQIDDIFFG 78 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~-~~~~~~~~~g-~~~~~-~-~~~~~~~~dvii~~v~~~~~~~~v~~~ 78 (173)
++|.|||.|.+|...++.|.+.|++|++++++. +.+..+.+.+ +.... . ..+.+.++|+||.|+.++. +...+..
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e-lN~~i~~ 89 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR-VNEQVKE 89 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH-HHHHHHH
Confidence 689999999999999999999999999998874 3334444433 22211 1 1334678999999998654 3332210
Q ss_pred c--cc--------------hhh-cCCCCCEEEEcCC--CCHHHHHHHHHHHhc
Q 044797 79 H--EG--------------VLK-GLQKGAVIILQST--ILPSHMQKLEKTFTG 112 (173)
Q Consensus 79 ~--~~--------------i~~-~l~~g~~ii~~st--~~~~~~~~l~~~l~~ 112 (173)
. .. +.+ ....|.+.+.+|| .+|...+.+.+.+++
T Consensus 90 ~a~~~~lvn~~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~ 142 (202)
T PRK06718 90 DLPENALFNVITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELEA 142 (202)
T ss_pred HHHhCCcEEECCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHHH
Confidence 0 00 001 1234666665554 577777777777654
No 220
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.25 E-value=3e-06 Score=57.77 Aligned_cols=88 Identities=17% Similarity=0.156 Sum_probs=56.3
Q ss_pred eEEEEe-CChhhHHHHHHHHHCC-Ce-EEEEcCChHHHHHHHHc-----C---CceecChhhhhcCCCEEEEeccChhhh
Q 044797 4 KVGFVG-LDEYSVDMAASLIRSG-YK-VQAFEISDPLVDKFFML-----G---GIRSASPMDAGKDVSALVVVISHVDQI 72 (173)
Q Consensus 4 ~IgiiG-~G~mG~~ia~~l~~~g-~~-V~~~d~~~~~~~~~~~~-----g---~~~~~~~~~~~~~~dvii~~v~~~~~~ 72 (173)
||+|+| .|.+|..+.+.|.++- ++ +.++.++++.-+.+... + ....+...+.+.++|++|+|+|+ ...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~-~~~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPH-GAS 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCH-HHH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCch-hHH
Confidence 799999 9999999999999854 34 45566665222222221 1 22333334556899999999994 334
Q ss_pred hhhhcCccchhhcCCCCCEEEEcCCC
Q 044797 73 DDIFFGHEGVLKGLQKGAVIILQSTI 98 (173)
Q Consensus 73 ~~v~~~~~~i~~~l~~g~~ii~~st~ 98 (173)
.+.. ...+++|..++|.|+.
T Consensus 80 ~~~~------~~~~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 80 KELA------PKLLKAGIKVIDLSGD 99 (121)
T ss_dssp HHHH------HHHHHTTSEEEESSST
T ss_pred HHHH------HHHhhCCcEEEeCCHH
Confidence 4443 1235778899999864
No 221
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=98.24 E-value=1e-05 Score=63.06 Aligned_cols=117 Identities=13% Similarity=0.003 Sum_probs=74.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-C----Cceec---ChhhhhcCCCEEEEeccChhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-G----GIRSA---SPMDAGKDVSALVVVISHVDQID 73 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g----~~~~~---~~~~~~~~~dvii~~v~~~~~~~ 73 (173)
+++.|||+|.+|.+++..|...|. +|+++||++++.+.+.+. + +.... +..+.+.++|+||.|+|......
T Consensus 126 k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~ 205 (282)
T TIGR01809 126 FRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADVPAD 205 (282)
T ss_pred ceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCCCCC
Confidence 478999999999999999999996 699999999999887653 1 11111 22344578999999998543221
Q ss_pred hhhcC-ccc--hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 74 DIFFG-HEG--VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 74 ~v~~~-~~~--i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
..... ... ....++++..++|..-. |..+ .+.+..++.|...++.-
T Consensus 206 ~~~l~~~~~~~~~~~~~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~~Gl 254 (282)
T TIGR01809 206 YVDLFATVPFLLLKRKSSEGIFLDAAYD-PWPT-PLVAIVSAAGWRVISGL 254 (282)
T ss_pred HHHhhhhhhhhccccCCCCcEEEEEeeC-CCCC-HHHHHHHHCCCEEECcH
Confidence 11000 000 00123467788888643 3332 34555666787766544
No 222
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.24 E-value=6e-06 Score=64.16 Aligned_cols=73 Identities=15% Similarity=0.148 Sum_probs=59.5
Q ss_pred CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.|||.|. +|.+++..|.+.|.+|+++++.. .++.+.++++|+||.+++.+.- +.
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~----i~---- 216 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGL----VT---- 216 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcc----cC----
Confidence 5899999998 99999999999999999998653 2466788999999999986432 21
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
.+.+++|+++||.+..
T Consensus 217 -~~~vk~gavVIDvGi~ 232 (286)
T PRK14175 217 -KDVVKEGAVIIDVGNT 232 (286)
T ss_pred -HHHcCCCcEEEEcCCC
Confidence 1357899999999864
No 223
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=98.23 E-value=6.8e-06 Score=59.21 Aligned_cols=93 Identities=15% Similarity=0.057 Sum_probs=64.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec--------------------------Chhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA--------------------------SPMDAG 56 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~--------------------------~~~~~~ 56 (173)
.+|.|+|.|+.|...++.+...|++|+++|.++++.+.+...+..... ...+.+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i 100 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEFI 100 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHHH
Confidence 589999999999999999999999999999999988877665432111 123556
Q ss_pred cCCCEEEEecc-ChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797 57 KDVSALVVVIS-HVDQIDDIFFGHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 57 ~~~dvii~~v~-~~~~~~~v~~~~~~i~~~l~~g~~ii~~st 97 (173)
+.+|+||.+.- +......++. ++..+.++++.+|+|.|.
T Consensus 101 ~~~d~vI~~~~~~~~~~P~lvt--~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 101 APADIVIGNGLYWGKRAPRLVT--EEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HH-SEEEEHHHBTTSS---SBE--HHHHHTSSTTEEEEETTG
T ss_pred hhCcEEeeecccCCCCCCEEEE--hHHhhccCCCceEEEEEe
Confidence 78999997542 2333333432 234567889999999964
No 224
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.22 E-value=9.3e-06 Score=67.92 Aligned_cols=93 Identities=14% Similarity=0.187 Sum_probs=68.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee--cC---------------h----------hhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS--AS---------------P----------MDA 55 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~--~~---------------~----------~~~ 55 (173)
.||.|+|+|.+|...++.+...|.+|+++|+++++.+...+.|++.. +. . .+.
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~ 245 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQ 245 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999998888887622 11 0 111
Q ss_pred hcCCCEEEEeccChhh-hhhhhcCccchhhcCCCCCEEEEcCC
Q 044797 56 GKDVSALVVVISHVDQ-IDDIFFGHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 56 ~~~~dvii~~v~~~~~-~~~v~~~~~~i~~~l~~g~~ii~~st 97 (173)
.+++|++|.|+..+.. ...++. ++..+.+++|.+|+|.+.
T Consensus 246 ~~gaDVVIetag~pg~~aP~lit--~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 246 AKEVDIIITTALIPGKPAPKLIT--AEMVASMKPGSVIVDLAA 286 (509)
T ss_pred cCCCCEEEECCCCCcccCcchHH--HHHHHhcCCCCEEEEEcc
Confidence 2469999999864321 111211 234467889999998875
No 225
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.20 E-value=1.2e-05 Score=51.48 Aligned_cols=61 Identities=23% Similarity=0.205 Sum_probs=48.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHC-CCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRS-GYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
++++|+|+|.+|..+++.+.+. +.++.+||| |++|.+++.+..+.+-
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~~~~------ 71 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPVLEE------ 71 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCchHH------
Confidence 5899999999999999999998 578999998 9999999854433221
Q ss_pred hhhcCCCCCEEEEc
Q 044797 82 VLKGLQKGAVIILQ 95 (173)
Q Consensus 82 i~~~l~~g~~ii~~ 95 (173)
..+.+.++.+|++.
T Consensus 72 ~~~~~~~~~~v~~~ 85 (86)
T cd05191 72 ATAKINEGAVVIDL 85 (86)
T ss_pred HHHhcCCCCEEEec
Confidence 12346778888875
No 226
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=98.16 E-value=3.6e-05 Score=66.23 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=71.9
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec---Chhhh-----hcCCCEEEEeccChhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA---SPMDA-----GKDVSALVVVISHVDQIDD 74 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~---~~~~~-----~~~~dvii~~v~~~~~~~~ 74 (173)
.+|-|+|+|++|+.+++.|.+.|+++++.|.|+++++.+++.|..... +..+. ++++|.+++++.+++....
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~ 480 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSLQ 480 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHH
Confidence 478899999999999999999999999999999999999887754311 11222 4579999999987665544
Q ss_pred hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797 75 IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI 118 (173)
Q Consensus 75 v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v 118 (173)
+.. ......|+..++..+. ++.. ...+.+.|+.++
T Consensus 481 i~~----~ar~~~p~~~iiaRa~-d~~~----~~~L~~~Gad~v 515 (621)
T PRK03562 481 LVE----LVKEHFPHLQIIARAR-DVDH----YIRLRQAGVEKP 515 (621)
T ss_pred HHH----HHHHhCCCCeEEEEEC-CHHH----HHHHHHCCCCEE
Confidence 441 2222334433333222 2332 344555677665
No 227
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.16 E-value=0.00012 Score=57.87 Aligned_cols=64 Identities=13% Similarity=0.116 Sum_probs=47.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHH----Hc----C---CceecChhhhhcCCCEEEEecc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKFF----ML----G---GIRSASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~----~~----g---~~~~~~~~~~~~~~dvii~~v~ 67 (173)
+||+|||+|.+|+.+|..|...|. ++.++|+++++++... +. . +....++++ +++||+||++.-
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG 80 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAG 80 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCC
Confidence 699999999999999999988774 7999999887654321 11 1 122245554 899999999753
No 228
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=98.12 E-value=2e-05 Score=62.50 Aligned_cols=73 Identities=16% Similarity=0.118 Sum_probs=57.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-c-C---hhhhh-cCCCEEEEeccChhhhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-A-S---PMDAG-KDVSALVVVISHVDQIDDIF 76 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~-~---~~~~~-~~~dvii~~v~~~~~~~~v~ 76 (173)
.+|+|+|+|-+|+.-.|.....|.+|+++|+++++.+.+++.|+... + + ..+.+ +.+|+++.+++ +..+...+
T Consensus 168 ~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~l 246 (339)
T COG1064 168 KWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPSL 246 (339)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHHH
Confidence 58999999999999999999999999999999999999888876422 1 1 11222 23999999999 77666555
No 229
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.11 E-value=1.5e-05 Score=62.64 Aligned_cols=91 Identities=20% Similarity=0.205 Sum_probs=66.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCC-------CeEEEEcCCh------HHHHHHHH-c--------------CCceecChhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSG-------YKVQAFEISD------PLVDKFFM-L--------------GGIRSASPMD 54 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g-------~~V~~~d~~~------~~~~~~~~-~--------------g~~~~~~~~~ 54 (173)
.||++||.|++|+++|+.+.+.- .+|..|-+.. +++..... . .+...+++.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 58999999999999999886421 2576663321 22222111 0 1335678889
Q ss_pred hhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797 55 AGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 55 ~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st 97 (173)
++.++|+++..+| .+-+.+++ +++..+++++...|+.+-
T Consensus 102 a~~dADilvf~vP-hQf~~~ic---~~l~g~vk~~~~aISL~K 140 (372)
T KOG2711|consen 102 AAKDADILVFVVP-HQFIPRIC---EQLKGYVKPGATAISLIK 140 (372)
T ss_pred HhccCCEEEEeCC-hhhHHHHH---HHHhcccCCCCeEEEeec
Confidence 9999999999999 46678888 678889999999998864
No 230
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=98.10 E-value=0.0001 Score=58.00 Aligned_cols=129 Identities=12% Similarity=0.209 Sum_probs=77.2
Q ss_pred EEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHHHHH----c----C-Cce--ecChhhhhcCCCEEEEeccChhh
Q 044797 5 VGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDKFFM----L----G-GIR--SASPMDAGKDVSALVVVISHVDQ 71 (173)
Q Consensus 5 IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~~~~----~----g-~~~--~~~~~~~~~~~dvii~~v~~~~~ 71 (173)
|+|||+|.+|++++..++..| .++.++|+++++++.... . . .+. ..+ .+.+++||+||++...+..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence 689999999999999999888 689999999887654322 1 0 111 233 4678999999999853321
Q ss_pred ---------------hhhhhcCccchhhcCCCCCEEEEcCCCCHHHH-HHHHHHHhcCCceeeeceeeeeecCHhhHHHH
Q 044797 72 ---------------IDDIFFGHEGVLKGLQKGAVIILQSTILPSHM-QKLEKTFTGNLTFYILERMFLISSSIDCFTYL 135 (173)
Q Consensus 72 ---------------~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~-~~l~~~l~~~g~~~v~~~~~~~~g~~~~~~~~ 135 (173)
++++. +.+.++. |+..++..++ |.+. ..+.... .| +-...++.++...+....-
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~---~~i~~~~-p~~~viv~sN--P~d~~~~~~~~~--sg--~~~~kviG~gt~lDs~r~~ 149 (300)
T cd00300 80 PGETRLDLINRNAPILRSVI---TNLKKYG-PDAIILVVSN--PVDILTYVAQKL--SG--LPKNRVIGSGTLLDSARFR 149 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHH---HHHHHhC-CCeEEEEccC--hHHHHHHHHHHH--hC--cCHHHEEecCCcHHHHHHH
Confidence 12222 2344444 5556666553 4432 2222221 12 2223466677776655555
Q ss_pred HHHHHhhCC
Q 044797 136 FLVKNEFFI 144 (173)
Q Consensus 136 ~~~~~~~g~ 144 (173)
..+-+.++.
T Consensus 150 ~~la~~l~v 158 (300)
T cd00300 150 SLLAEKLDV 158 (300)
T ss_pred HHHHHHhCC
Confidence 555566654
No 231
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=98.08 E-value=9.1e-06 Score=54.93 Aligned_cols=103 Identities=12% Similarity=0.079 Sum_probs=65.0
Q ss_pred eCChhhHHHHHHHHHC----CCeE-EEEcCC--hHHHHHHHHcCCceecChhhhhc--CCCEEEEeccChhhhhhhhcCc
Q 044797 9 GLDEYSVDMAASLIRS----GYKV-QAFEIS--DPLVDKFFMLGGIRSASPMDAGK--DVSALVVVISHVDQIDDIFFGH 79 (173)
Q Consensus 9 G~G~mG~~ia~~l~~~----g~~V-~~~d~~--~~~~~~~~~~g~~~~~~~~~~~~--~~dvii~~v~~~~~~~~v~~~~ 79 (173)
|+|.+|+.+++.|.+. +.++ .+++|+ .+........+.....+.+++++ +.|+||-|.+ +..+.+.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~-~~~~~~~~--- 76 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTS-SEAVAEYY--- 76 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SS-CHHHHHHH---
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCC-chHHHHHH---
Confidence 8999999999999876 4555 577888 11111111123466778888888 8999999976 44555544
Q ss_pred cchhhcCCCCCEEEEcCCCC---HHHHHHHHHHHhcCCceee
Q 044797 80 EGVLKGLQKGAVIILQSTIL---PSHMQKLEKTFTGNLTFYI 118 (173)
Q Consensus 80 ~~i~~~l~~g~~ii~~st~~---~~~~~~l~~~l~~~g~~~v 118 (173)
.+.++.|..++..+... +...+++.+..+++|.++.
T Consensus 77 ---~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 77 ---EKALERGKHVVTANKGALADEALYEELREAARKNGVRIY 115 (117)
T ss_dssp ---HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEE
T ss_pred ---HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEE
Confidence 35677899999886532 2345677777777777653
No 232
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=98.06 E-value=1.8e-05 Score=63.46 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=57.5
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHC-CCeEE-EEcCChHHHHHHHH-c----CC---cee-cChhhhhcCCCEEEEeccChh
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRS-GYKVQ-AFEISDPLVDKFFM-L----GG---IRS-ASPMDAGKDVSALVVVISHVD 70 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~-~----g~---~~~-~~~~~~~~~~dvii~~v~~~~ 70 (173)
+||+|+|+ |.+|..+++.|.++ ++++. +++++++.-+.+.+ . +. ... .+.+++.+++|++|+|+|+..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 48999998 99999999999976 56776 55654422222221 1 11 111 144555568999999999654
Q ss_pred hhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797 71 QIDDIFFGHEGVLKGLQKGAVIILQSTI 98 (173)
Q Consensus 71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~ 98 (173)
+ .++. ......|..+||.|+.
T Consensus 81 s-~~~~------~~~~~~G~~VIDlS~~ 101 (346)
T TIGR01850 81 S-AELA------PELLAAGVKVIDLSAD 101 (346)
T ss_pred H-HHHH------HHHHhCCCEEEeCChh
Confidence 3 3333 1234578999999863
No 233
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=98.04 E-value=2.9e-05 Score=60.38 Aligned_cols=112 Identities=14% Similarity=0.053 Sum_probs=76.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHc----CCc-eecChhhh--hcCCCEEEEeccChhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFML----GGI-RSASPMDA--GKDVSALVVVISHVDQIDD 74 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~----g~~-~~~~~~~~--~~~~dvii~~v~~~~~~~~ 74 (173)
.++.++|.|-.+.+++..|++.| .+++++||+.++.+++.+. +.. ......+. .+++|+||-++|-.-.-..
T Consensus 127 ~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~ 206 (283)
T COG0169 127 KRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMAGPE 206 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCCCCC
Confidence 46899999999999999999999 4799999999999887653 211 11122222 2258999999985432221
Q ss_pred ---hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 75 ---IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 75 ---v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
.+ . ...++++.++.|.--....+ .+.+..++.|...++.-
T Consensus 207 ~~~~~----~-~~~l~~~~~v~D~vY~P~~T--plL~~A~~~G~~~idGl 249 (283)
T COG0169 207 GDSPV----P-AELLPKGAIVYDVVYNPLET--PLLREARAQGAKTIDGL 249 (283)
T ss_pred CCCCC----c-HHhcCcCCEEEEeccCCCCC--HHHHHHHHcCCeEECcH
Confidence 11 1 35678899999986654333 45566677787755543
No 234
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=98.03 E-value=1.4e-05 Score=62.33 Aligned_cols=91 Identities=18% Similarity=0.206 Sum_probs=69.7
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCc--ee----cChhhhhcCCCEEEEec--cChhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGI--RS----ASPMDAGKDVSALVVVI--SHVDQID 73 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~--~~----~~~~~~~~~~dvii~~v--~~~~~~~ 73 (173)
-||.|||.|.+|..-|+-..-.|.+|++.|+|.+++..+.+. +.+ .. .+.++.+.++|++|-++ |... ..
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgak-aP 247 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAK-AP 247 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCC-Cc
Confidence 479999999999999999999999999999999999887764 322 22 23457788999999886 4222 22
Q ss_pred hhhcCccchhhcCCCCCEEEEcC
Q 044797 74 DIFFGHEGVLKGLQKGAVIILQS 96 (173)
Q Consensus 74 ~v~~~~~~i~~~l~~g~~ii~~s 96 (173)
.+.. ++..+.++||.+|+|..
T Consensus 248 kLvt--~e~vk~MkpGsVivDVA 268 (371)
T COG0686 248 KLVT--REMVKQMKPGSVIVDVA 268 (371)
T ss_pred eehh--HHHHHhcCCCcEEEEEE
Confidence 2332 35678899999999985
No 235
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.03 E-value=2.8e-05 Score=60.38 Aligned_cols=73 Identities=14% Similarity=0.191 Sum_probs=59.4
Q ss_pred CeEEEEeCChh-hHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDEY-SVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~m-G~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.|||.|.. |.+++..|.+.|..|++++.. +.++.+.++++|+||++++.+. .+.
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~----~i~---- 216 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKRN----VLT---- 216 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcC----ccC----
Confidence 57999999999 999999999999999988643 2356788899999999999543 221
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
...+++|+++||.+..
T Consensus 217 -~~~ik~gavVIDVGin 232 (285)
T PRK14189 217 -ADMVKPGATVIDVGMN 232 (285)
T ss_pred -HHHcCCCCEEEEcccc
Confidence 2568999999999864
No 236
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=98.02 E-value=8.4e-05 Score=55.31 Aligned_cols=110 Identities=12% Similarity=0.098 Sum_probs=70.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH-HHHHHHHcC-Cceec--ChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP-LVDKFFMLG-GIRSA--SPMDAGKDVSALVVVISHVDQIDDIFFG 78 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g-~~~~~--~~~~~~~~~dvii~~v~~~~~~~~v~~~ 78 (173)
++|.|||.|.+|..-++.|++.|.+|++++++.. .++.+.+.+ +.... -..+.++++++||.++.++..-..+...
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ln~~i~~~ 89 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEELNRRVAHA 89 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHHHHHHHHH
Confidence 5899999999999999999999999999988753 445555543 32211 1134577899999998765322222210
Q ss_pred ------------ccc----hh-hcCCCCCEEEEcCC--CCHHHHHHHHHHHhc
Q 044797 79 ------------HEG----VL-KGLQKGAVIILQST--ILPSHMQKLEKTFTG 112 (173)
Q Consensus 79 ------------~~~----i~-~~l~~g~~ii~~st--~~~~~~~~l~~~l~~ 112 (173)
+.+ +. ..+..|.+.|.+|| .+|...+.+.+.+++
T Consensus 90 a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~ 142 (205)
T TIGR01470 90 ARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIET 142 (205)
T ss_pred HHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 000 00 11334667765555 478777777777754
No 237
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=98.01 E-value=7.2e-05 Score=52.27 Aligned_cols=111 Identities=14% Similarity=0.078 Sum_probs=67.4
Q ss_pred eEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH--------cCCceecChhhhhc--CCCEEEEeccChhhh
Q 044797 4 KVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM--------LGGIRSASPMDAGK--DVSALVVVISHVDQI 72 (173)
Q Consensus 4 ~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~~dvii~~v~~~~~~ 72 (173)
||.++|+|.+|+.++++|...|. +++++|.+.-....+.. .|-..+....+.++ +.++-+...+....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~- 79 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGIS- 79 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecC-
Confidence 68999999999999999999997 69999876432222211 12111212222221 23444444432111
Q ss_pred hhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeecee
Q 044797 73 DDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERM 122 (173)
Q Consensus 73 ~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~ 122 (173)
.. .....+.+-+++++++.. +.....+.+.++++++.++..++
T Consensus 80 -~~-----~~~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~ 122 (143)
T cd01483 80 -ED-----NLDDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGG 122 (143)
T ss_pred -hh-----hHHHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcC
Confidence 10 012345667788888765 55667788888888998887653
No 238
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=98.00 E-value=2.7e-05 Score=61.47 Aligned_cols=64 Identities=11% Similarity=0.146 Sum_probs=46.2
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCC--eEEEEcCCh--HHHHH----HHH----cC--Cce--ecChhhhhcCCCEEEEe
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGY--KVQAFEISD--PLVDK----FFM----LG--GIR--SASPMDAGKDVSALVVV 65 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~--~V~~~d~~~--~~~~~----~~~----~g--~~~--~~~~~~~~~~~dvii~~ 65 (173)
|||+|+|+ |.+|..++..|...|+ +|+++|+++ ++++. +.+ .+ ... ..+. +.++++|+||++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 59999998 9999999999999986 499999954 44321 111 12 122 2343 458999999999
Q ss_pred cc
Q 044797 66 IS 67 (173)
Q Consensus 66 v~ 67 (173)
..
T Consensus 80 ag 81 (309)
T cd05294 80 AG 81 (309)
T ss_pred cC
Confidence 85
No 239
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=98.00 E-value=7.4e-05 Score=53.28 Aligned_cols=66 Identities=15% Similarity=0.067 Sum_probs=46.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC-Cceec-Ch-hhhhcCCCEEEEeccChh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG-GIRSA-SP-MDAGKDVSALVVVISHVD 70 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g-~~~~~-~~-~~~~~~~dvii~~v~~~~ 70 (173)
++|.|||.|.+|...++.|.+.|++|+++++. ..+.+.+.+ +.... .+ ++-++++|+|+.++.++.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e 82 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHA 82 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHhccCcEEEecccChhcCCCceEEEECCCCHH
Confidence 58999999999999999999999999999644 333443332 22111 11 223678899999987543
No 240
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.97 E-value=7.6e-05 Score=55.32 Aligned_cols=32 Identities=25% Similarity=0.447 Sum_probs=30.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEIS 34 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~ 34 (173)
.||+|+|+|.+|+.++..|.+.|+ +++++|++
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 689999999999999999999998 69999988
No 241
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.95 E-value=4.7e-05 Score=54.97 Aligned_cols=62 Identities=21% Similarity=0.137 Sum_probs=49.7
Q ss_pred EEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-------ecChhhhhcCCCEEEEeccC
Q 044797 5 VGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-------SASPMDAGKDVSALVVVISH 68 (173)
Q Consensus 5 IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~~dvii~~v~~ 68 (173)
|.|+|+ |.+|..+++.|++.|++|++.-|++++.+. ..+++. ..+..++++++|.|+.+++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 678885 999999999999999999999999998876 333321 12345678899999999974
No 242
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.91 E-value=8.3e-05 Score=53.09 Aligned_cols=74 Identities=19% Similarity=0.210 Sum_probs=51.7
Q ss_pred CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.+||-+. +|.+++..|.+.|..|++++.+. .+.++.++.+|+||+++..+..++
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~i~-------- 94 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKPNLIK-------- 94 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT-B---------
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeeccccccc--------
Confidence 5889999885 99999999999999999987653 356677889999999998554322
Q ss_pred hhhcCCCCCEEEEcCCCC
Q 044797 82 VLKGLQKGAVIILQSTIL 99 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~~ 99 (173)
...+++|.++||.+...
T Consensus 95 -~~~ik~gavVIDvG~~~ 111 (160)
T PF02882_consen 95 -ADWIKPGAVVIDVGINY 111 (160)
T ss_dssp -GGGS-TTEEEEE--CEE
T ss_pred -cccccCCcEEEecCCcc
Confidence 24578999999997653
No 243
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.91 E-value=0.00011 Score=60.96 Aligned_cols=108 Identities=15% Similarity=0.178 Sum_probs=74.2
Q ss_pred CeEEEEeC----ChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhh
Q 044797 3 SKVGFVGL----DEYSVDMAASLIRSGY--KVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIF 76 (173)
Q Consensus 3 ~~IgiiG~----G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~ 76 (173)
++|+|||. |++|..+.++|.+.|+ +|+..|++.+.+ .|.....+.+++-+..|++++++| +..+.+++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~i-----~G~~~~~sl~~lp~~~Dlavi~vp-~~~~~~~l 81 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGEI-----LGVKAYPSVLEIPDPVDLAVIVVP-AKYVPQVV 81 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCcc-----CCccccCCHHHCCCCCCEEEEecC-HHHHHHHH
Confidence 58999999 8899999999999998 576666654321 367777888888788999999999 56667776
Q ss_pred cCccchhhcCCCCCEEEEcCCCC------HHHHHHHHHHHhcCCceeeec
Q 044797 77 FGHEGVLKGLQKGAVIILQSTIL------PSHMQKLEKTFTGNLTFYILE 120 (173)
Q Consensus 77 ~~~~~i~~~l~~g~~ii~~st~~------~~~~~~l~~~l~~~g~~~v~~ 120 (173)
+++.+. .-..+++-++... ....+++.+..+++|++++..
T Consensus 82 ---~e~~~~-gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGP 127 (447)
T TIGR02717 82 ---EECGEK-GVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGP 127 (447)
T ss_pred ---HHHHhc-CCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEec
Confidence 334332 2223333222111 122467777778888887654
No 244
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.91 E-value=3.6e-05 Score=61.45 Aligned_cols=112 Identities=20% Similarity=0.203 Sum_probs=67.7
Q ss_pred CCCeEEEEeCChhhHHHHHHHHH--------CCC--eE-EEEcCChH----------HHHHHHHc-CC--ce-------e
Q 044797 1 MASKVGFVGLDEYSVDMAASLIR--------SGY--KV-QAFEISDP----------LVDKFFML-GG--IR-------S 49 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~--------~g~--~V-~~~d~~~~----------~~~~~~~~-g~--~~-------~ 49 (173)
|+.+|+++|+|++|+.+++.|.+ .|. +| .+.|++.. ++....+. +. .. .
T Consensus 1 ~~i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~ 80 (336)
T PRK08374 1 MEVKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYN 80 (336)
T ss_pred CeeEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccC
Confidence 78899999999999999988866 463 33 34464421 11111111 10 01 1
Q ss_pred cChhhhh--cCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCH-HHHHHHHHHHhcCCceeee
Q 044797 50 ASPMDAG--KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILP-SHMQKLEKTFTGNLTFYIL 119 (173)
Q Consensus 50 ~~~~~~~--~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~-~~~~~l~~~l~~~g~~~v~ 119 (173)
.+..+.+ .++|++|-++.. ....++. ...+..|..++..+.... ...+++.+..++++..+.-
T Consensus 81 ~~~~ell~~~~~DVvVd~t~~-~~a~~~~------~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ 146 (336)
T PRK08374 81 FSPEEIVEEIDADIVVDVTND-KNAHEWH------LEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLF 146 (336)
T ss_pred CCHHHHHhcCCCCEEEECCCc-HHHHHHH------HHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEE
Confidence 1456666 479999999864 3344443 355778888987765311 2345666666667776653
No 245
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.90 E-value=7.6e-05 Score=58.42 Aligned_cols=114 Identities=12% Similarity=-0.045 Sum_probs=72.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCCh---HHHHHHHH----cC--Cce--e--c---ChhhhhcCCCEEEEe
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISD---PLVDKFFM----LG--GIR--S--A---SPMDAGKDVSALVVV 65 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~---~~~~~~~~----~g--~~~--~--~---~~~~~~~~~dvii~~ 65 (173)
+++.|+|+|.+|.+++..|...|.+ |++++|++ ++.+.+.+ .+ +.. . + +..+.++.+|+||.+
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINa 206 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNA 206 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEe
Confidence 4678899999999999999999986 99999997 56555433 11 111 1 1 122345678999999
Q ss_pred ccChhh--hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 66 ISHVDQ--IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 66 v~~~~~--~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
+|-.-. ...... .-...+.++.++.|..-.... + .+.+..++.|.+.++.-
T Consensus 207 Tp~Gm~~~~~~~~~---~~~~~l~~~~~v~D~vY~P~~-T-~ll~~A~~~G~~~~~G~ 259 (289)
T PRK12548 207 TLVGMKPNDGETNI---KDTSVFRKDLVVADTVYNPKK-T-KLLEDAEAAGCKTVGGL 259 (289)
T ss_pred CCCCCCCCCCCCCC---CcHHhcCCCCEEEEecCCCCC-C-HHHHHHHHCCCeeeCcH
Confidence 984321 111110 012346778899999764333 2 45555666787766544
No 246
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.89 E-value=8.6e-05 Score=57.88 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=57.3
Q ss_pred CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.|+|.|. .|.+++..|.+.|.+|+++++.. .++.+.++++|+||.+++.+. .+.
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~~~----~v~---- 217 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGKPE----LIK---- 217 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCCCC----cCC----
Confidence 5899999998 99999999999999999999732 234555689999999996433 221
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
.+.+++|.+++|....
T Consensus 218 -~~~lk~gavViDvg~n 233 (283)
T PRK14192 218 -KDWIKQGAVVVDAGFH 233 (283)
T ss_pred -HHHcCCCCEEEEEEEe
Confidence 2457899999998753
No 247
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=97.89 E-value=7.3e-05 Score=49.72 Aligned_cols=82 Identities=18% Similarity=0.167 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHCCCeEEEEcCChHHHHHHH---HcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCC
Q 044797 13 YSVDMAASLIRSGYKVQAFEISDPLVDKFF---MLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKG 89 (173)
Q Consensus 13 mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~---~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g 89 (173)
-+..+++.|.+.|.+|.+||+.-....... ..+++..+++.++++++|.||++++.+. .+..-. +++...+.++
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~-f~~l~~--~~~~~~~~~~ 94 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDE-FRELDW--EEIAKLMRKP 94 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GG-GGCCGH--HHHHHHSCSS
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHH-HhccCH--HHHHHhcCCC
Confidence 356788999999999999999866655444 2467888889999999999999999654 444211 3566667788
Q ss_pred CEEEEcCC
Q 044797 90 AVIILQST 97 (173)
Q Consensus 90 ~~ii~~st 97 (173)
.+|+|+-.
T Consensus 95 ~~iiD~~~ 102 (106)
T PF03720_consen 95 PVIIDGRN 102 (106)
T ss_dssp EEEEESSS
T ss_pred CEEEECcc
Confidence 99999854
No 248
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.89 E-value=6.4e-05 Score=59.93 Aligned_cols=107 Identities=16% Similarity=0.146 Sum_probs=72.6
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHC-C-CeEEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRS-G-YKVQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG 78 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~-g-~~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~ 78 (173)
++|.|+|+ |.||+.+++.|... | .++++++|+++++..+... +.....+..+++.++|+|+.++..+..+ ++ .
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~~~--~I-~ 232 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPKGV--EI-D 232 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCcCC--cC-C
Confidence 57999998 89999999999854 5 5899999998888776553 2112235678888999999988643321 12 1
Q ss_pred ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
.+.++++.+++|.+- |.+.+. ...+.++.+++.+
T Consensus 233 ----~~~l~~~~~viDiAv--PRDVd~---~v~~~~V~v~~gG 266 (340)
T PRK14982 233 ----PETLKKPCLMIDGGY--PKNLDT---KVQGPGIHVLKGG 266 (340)
T ss_pred ----HHHhCCCeEEEEecC--CCCCCc---ccCCCCEEEEeCC
Confidence 134578899999873 443332 1223677776654
No 249
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.89 E-value=7.7e-05 Score=57.95 Aligned_cols=73 Identities=18% Similarity=0.168 Sum_probs=59.7
Q ss_pred CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.|||-+. +|.+++..|.+.|..|+++++. +.++.+.++.+|+||.++..+..+.
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~v~-------- 217 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGFIP-------- 217 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCccccc--------
Confidence 5899999999 9999999999999999999754 2357788899999999997544322
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
.+.+++|+++||.+..
T Consensus 218 -~~~vk~gavVIDvGin 233 (285)
T PRK10792 218 -GEWIKPGAIVIDVGIN 233 (285)
T ss_pred -HHHcCCCcEEEEcccc
Confidence 2567899999999754
No 250
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.88 E-value=0.00031 Score=58.03 Aligned_cols=68 Identities=15% Similarity=0.179 Sum_probs=52.9
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc--CCcee----cChh----hhhcCCCEEEEeccCh
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML--GGIRS----ASPM----DAGKDVSALVVVISHV 69 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--g~~~~----~~~~----~~~~~~dvii~~v~~~ 69 (173)
+++|.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+. +.... .+.+ .-++++|.++++++++
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~ 308 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD 308 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence 3689999999999999999999999999999999998887764 33221 1222 1245799999888854
No 251
>PRK15076 alpha-galactosidase; Provisional
Probab=97.87 E-value=3.4e-05 Score=63.54 Aligned_cols=67 Identities=12% Similarity=0.186 Sum_probs=48.8
Q ss_pred CCeEEEEeCChhhHHHHH--HHH----HCCCeEEEEcCChHHHHHHHH--------cC----CceecChhhhhcCCCEEE
Q 044797 2 ASKVGFVGLDEYSVDMAA--SLI----RSGYKVQAFEISDPLVDKFFM--------LG----GIRSASPMDAGKDVSALV 63 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~--~l~----~~g~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~~dvii 63 (173)
|+||+|||+|.||...+. .++ -.+.+|+++|+++++.+.... .+ +..+.+..+++++||+|+
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv 80 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVI 80 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEe
Confidence 379999999999966554 443 235689999999988763211 12 234567788999999999
Q ss_pred EeccC
Q 044797 64 VVISH 68 (173)
Q Consensus 64 ~~v~~ 68 (173)
++...
T Consensus 81 ~ti~v 85 (431)
T PRK15076 81 NAIQV 85 (431)
T ss_pred Eeeee
Confidence 99754
No 252
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.86 E-value=5.9e-05 Score=61.19 Aligned_cols=90 Identities=14% Similarity=0.106 Sum_probs=58.4
Q ss_pred CCCeEEEEeC-ChhhHHHHHHHHHC-CCeEEEEcCChHHHHHHHHcC-------CceecChh-hhhcCCCEEEEeccChh
Q 044797 1 MASKVGFVGL-DEYSVDMAASLIRS-GYKVQAFEISDPLVDKFFMLG-------GIRSASPM-DAGKDVSALVVVISHVD 70 (173)
Q Consensus 1 m~~~IgiiG~-G~mG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~g-------~~~~~~~~-~~~~~~dvii~~v~~~~ 70 (173)
|++||+|+|+ |..|..+.+.|.++ .++++.+.++.+.-+.+.... .....+.+ +.++++|++|+|+|+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~- 115 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG- 115 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH-
Confidence 4679999976 99999999999988 678887766543322222111 11111222 2257899999999954
Q ss_pred hhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797 71 QIDDIFFGHEGVLKGLQKGAVIILQSTI 98 (173)
Q Consensus 71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~ 98 (173)
...++. +.+..|..+||.|+-
T Consensus 116 ~s~~i~-------~~~~~g~~VIDlSs~ 136 (381)
T PLN02968 116 TTQEII-------KALPKDLKIVDLSAD 136 (381)
T ss_pred HHHHHH-------HHHhCCCEEEEcCch
Confidence 334443 234568899999863
No 253
>PLN02602 lactate dehydrogenase
Probab=97.85 E-value=0.00067 Score=54.50 Aligned_cols=64 Identities=9% Similarity=0.129 Sum_probs=47.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHHH----Hc----C-Ccee--cChhhhhcCCCEEEEecc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKFF----ML----G-GIRS--ASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~~----~~----g-~~~~--~~~~~~~~~~dvii~~v~ 67 (173)
+||+|||+|++|+.+|..+...+. ++.++|+++++++... +. + .... .++ +.+++||+||++.-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG 114 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAG 114 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCC
Confidence 599999999999999999988774 7999999887654321 10 1 2222 233 44889999999853
No 254
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=97.85 E-value=0.00014 Score=54.98 Aligned_cols=88 Identities=11% Similarity=0.160 Sum_probs=59.7
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC---eEEEEcCC----hHHH-------HHHHHc-CC-ceecChhhhhcCCCEEEEec
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY---KVQAFEIS----DPLV-------DKFFML-GG-IRSASPMDAGKDVSALVVVI 66 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~---~V~~~d~~----~~~~-------~~~~~~-g~-~~~~~~~~~~~~~dvii~~v 66 (173)
+||.|+|+|.+|..++..|...|. +++++||+ .++. +.+.+. +. ....++.+.++++|++|-++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIgaT 105 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGVS 105 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeCC
Confidence 589999999999999999999996 59999998 4442 222221 11 11125667788899999999
Q ss_pred cChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797 67 SHVDQIDDIFFGHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 67 ~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st 97 (173)
+ +..+.. +..+.+.++.++.+.++
T Consensus 106 ~-~G~~~~------~~l~~m~~~~ivf~lsn 129 (226)
T cd05311 106 R-PGVVKK------EMIKKMAKDPIVFALAN 129 (226)
T ss_pred C-CCCCCH------HHHHhhCCCCEEEEeCC
Confidence 7 332221 23344556777777763
No 255
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.84 E-value=9e-05 Score=57.81 Aligned_cols=113 Identities=14% Similarity=0.039 Sum_probs=73.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-----CC--ceecCh---hhhhcCCCEEEEeccChhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-----GG--IRSASP---MDAGKDVSALVVVISHVDQ 71 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-----g~--~~~~~~---~~~~~~~dvii~~v~~~~~ 71 (173)
+++.++|+|-.|.+++..|.+.|. +++++||++++.+.+.+. +. ....+. .+....+|+||-++|-.-.
T Consensus 128 k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~ 207 (283)
T PRK14027 128 DSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMP 207 (283)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCC
Confidence 468899999999999999999996 799999999998887542 11 111121 2345679999999984321
Q ss_pred hh-hhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 72 ID-DIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 72 ~~-~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
-. .... . ...+.++..+.|..-... .+ .+.+..++.|.+.++.-
T Consensus 208 ~~~~~~~---~-~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~~Gl 252 (283)
T PRK14027 208 AHPGTAF---D-VSCLTKDHWVGDVVYMPI-ET-ELLKAARALGCETLDGT 252 (283)
T ss_pred CCCCCCC---C-HHHcCCCcEEEEcccCCC-CC-HHHHHHHHCCCEEEccH
Confidence 00 0000 0 134667788889865432 22 34555666787766544
No 256
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.83 E-value=5.1e-05 Score=62.29 Aligned_cols=66 Identities=15% Similarity=0.067 Sum_probs=46.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISH 68 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~ 68 (173)
.+|.|||+|.+|.++|+.|.+.|++|+++|++++..+.....+-....+.....+++|++|.+.+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi 69 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGI 69 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCC
Confidence 589999999999999999999999999999887643321111001112333444678988888653
No 257
>PLN02477 glutamate dehydrogenase
Probab=97.82 E-value=0.00016 Score=59.07 Aligned_cols=107 Identities=14% Similarity=0.113 Sum_probs=68.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEE-EEcCC----------hHHHHHHHHc--------CCceecChhhh-hcCCCEE
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQ-AFEIS----------DPLVDKFFML--------GGIRSASPMDA-GKDVSAL 62 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~-~~d~~----------~~~~~~~~~~--------g~~~~~~~~~~-~~~~dvi 62 (173)
++|+|.|+|++|+..++.|.+.|.+|+ +.|.+ .+.+.+..+. +.+.. +.+++ ..+||++
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~~Dvl 285 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEPCDVL 285 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceeccccEE
Confidence 589999999999999999999999887 77776 5555333222 11222 22333 3479999
Q ss_pred EEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797 63 VVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE 120 (173)
Q Consensus 63 i~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~ 120 (173)
+-|.-.+....+.. +.+ .=++|+...+ .|- +.+..+.|+++|+.|+.+
T Consensus 286 iP~Al~~~I~~~na-------~~i-~ak~I~egAN-~p~-t~ea~~~L~~rGI~~~PD 333 (410)
T PLN02477 286 IPAALGGVINKENA-------ADV-KAKFIVEAAN-HPT-DPEADEILRKKGVVVLPD 333 (410)
T ss_pred eeccccccCCHhHH-------HHc-CCcEEEeCCC-CCC-CHHHHHHHHHCCcEEECh
Confidence 88865333222222 223 2234444444 444 456778889999998765
No 258
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.81 E-value=7.7e-05 Score=58.87 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=50.7
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-------ecChhhhhcCCCEEEEecc
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-------SASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~~dvii~~v~ 67 (173)
|||.|.| .|.+|+.+++.|+++|++|++..|++++...+...+++. ..+..++++++|+||.+..
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 4899997 699999999999999999999999987765554444432 1234567889999998764
No 259
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=97.81 E-value=4.4e-05 Score=55.30 Aligned_cols=65 Identities=11% Similarity=0.073 Sum_probs=50.7
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-----CCceecChhhhhcCCCEEEEecc
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-----GGIRSASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~~~~~~~~~~~~dvii~~v~ 67 (173)
|||+||| .|+.|+.+++-..++||+|+++-||+++....... .+--.++..+.+.+-|+||.+..
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEecc
Confidence 6999997 69999999999999999999999999998654221 11112234567788999999874
No 260
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.81 E-value=0.00017 Score=59.54 Aligned_cols=110 Identities=10% Similarity=0.073 Sum_probs=70.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEE-c----------CChHHHHHHHHc------------CCceecChhhhh-cC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAF-E----------ISDPLVDKFFML------------GGIRSASPMDAG-KD 58 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~-d----------~~~~~~~~~~~~------------g~~~~~~~~~~~-~~ 58 (173)
++|+|.|.|++|+..|+.|.+.|.+|++. | .+.+.+.+..+. +.+.. +.++.. .+
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~~i~~~d 311 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGGSPWSVP 311 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCccccccC
Confidence 68999999999999999999999998765 7 566654433321 11111 233333 37
Q ss_pred CCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797 59 VSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE 120 (173)
Q Consensus 59 ~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~ 120 (173)
||+++-|...+....+.. ..+. .++..+|-.++..|. +.+..+.|.++|+.|+.+
T Consensus 312 ~DVliPaAl~n~It~~~a---~~i~---~~~akiIvEgAN~p~-t~~A~~~L~~rGI~~vPD 366 (445)
T PRK09414 312 CDIALPCATQNELDEEDA---KTLI---ANGVKAVAEGANMPS-TPEAIEVFLEAGVLFAPG 366 (445)
T ss_pred CcEEEecCCcCcCCHHHH---HHHH---HcCCeEEEcCCCCCC-CHHHHHHHHHCCcEEECc
Confidence 999999987544333332 1221 234445555444554 456778888999998764
No 261
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.78 E-value=0.00039 Score=58.31 Aligned_cols=64 Identities=14% Similarity=0.055 Sum_probs=51.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceec--ChhhhhcCCCEEEEec
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSA--SPMDAGKDVSALVVVI 66 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~--~~~~~~~~~dvii~~v 66 (173)
.+|.|+|+|..|.+.++.|...|++|+++|+++++.+.+.+.|+.... ...+.++++|+||.+.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~Sp 78 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSP 78 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECC
Confidence 589999999999999999999999999999887776666666765432 2335567889888875
No 262
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.77 E-value=0.00022 Score=55.82 Aligned_cols=117 Identities=14% Similarity=0.030 Sum_probs=74.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCCh---HHHHHHHHc-C----C-ceecCh------hhhhcCCCEEEEec
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISD---PLVDKFFML-G----G-IRSASP------MDAGKDVSALVVVI 66 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~---~~~~~~~~~-g----~-~~~~~~------~~~~~~~dvii~~v 66 (173)
+++.|+|+|..+.+++..|...|. +|+++||++ ++.+.+.+. + . ....+. .+.+.++|+||.++
T Consensus 125 k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINaT 204 (288)
T PRK12749 125 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGT 204 (288)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEECC
Confidence 478899999999999999999885 799999995 466666542 1 1 111222 22456789999999
Q ss_pred cChhh--hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeeceeee
Q 044797 67 SHVDQ--IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERMFL 124 (173)
Q Consensus 67 ~~~~~--~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~~~ 124 (173)
|-.-. ....... -...++++.++.|.--. |..+ .+.+..+++|.+.++..-++
T Consensus 205 p~Gm~~~~~~~~~~---~~~~l~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~~Gl~ML 259 (288)
T PRK12749 205 KVGMKPLENESLVN---DISLLHPGLLVTECVYN-PHMT-KLLQQAQQAGCKTIDGYGML 259 (288)
T ss_pred CCCCCCCCCCCCCC---cHHHCCCCCEEEEecCC-CccC-HHHHHHHHCCCeEECCHHHH
Confidence 84321 1111100 11346778889998754 3333 45566667888776654333
No 263
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=97.77 E-value=0.00031 Score=54.50 Aligned_cols=113 Identities=13% Similarity=0.020 Sum_probs=73.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc-CCceecChhhhhcCCCEEEEeccChhhh-hhhhcCc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML-GGIRSASPMDAGKDVSALVVVISHVDQI-DDIFFGH 79 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~~~dvii~~v~~~~~~-~~v~~~~ 79 (173)
.++.++|+|..+.+++..|.+.|. +|+++||++++.+.+.+. +....... ....+|+||-|+|-.-.- .+.-.
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~Gm~~~~~~~~-- 198 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIGMAGGPEADK-- 198 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccccCCCCcccc--
Confidence 368899999999999999999996 599999999999887653 22111111 124589999999843110 00000
Q ss_pred cch-hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 80 EGV-LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 80 ~~i-~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
..+ ...++++.++.|..-... .+ .+.+..++.|...++.-
T Consensus 199 ~pi~~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~i~Gl 239 (272)
T PRK12550 199 LAFPEAEIDAASVVFDVVALPA-ET-PLIRYARARGKTVITGA 239 (272)
T ss_pred CCCCHHHcCCCCEEEEeecCCc-cC-HHHHHHHHCcCeEeCCH
Confidence 001 134677889999866433 32 35555667788766543
No 264
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=97.75 E-value=0.00044 Score=57.49 Aligned_cols=113 Identities=17% Similarity=0.234 Sum_probs=69.6
Q ss_pred CeEEEEeCChhhHH-HHHHHHHCCCeEEEEcCChH-HHHHHHHcCCceec-ChhhhhcCCCEEEEec--cC-hhhhhhhh
Q 044797 3 SKVGFVGLDEYSVD-MAASLIRSGYKVQAFEISDP-LVDKFFMLGGIRSA-SPMDAGKDVSALVVVI--SH-VDQIDDIF 76 (173)
Q Consensus 3 ~~IgiiG~G~mG~~-ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~-~~~~~~~~~dvii~~v--~~-~~~~~~v~ 76 (173)
++|.|+|+|..|.+ +|+.|.+.|++|+++|.++. ..+.+.+.|+.... ...+.++++|+||.+- |. .+.+....
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a~ 87 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELVAAR 87 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHH
Confidence 58999999999999 79999999999999997643 33456666766532 2334566899888763 32 12232221
Q ss_pred c------CccchhhcC-CCCCEE-EEcCCCCHHHHHHHHHHHhcCCc
Q 044797 77 F------GHEGVLKGL-QKGAVI-ILQSTILPSHMQKLEKTFTGNLT 115 (173)
Q Consensus 77 ~------~~~~i~~~l-~~g~~i-i~~st~~~~~~~~l~~~l~~~g~ 115 (173)
. .+.++...+ ++.++| |.-|.++..++.-+...|+..|.
T Consensus 88 ~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 88 ELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred HCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 1 111232222 233445 34455666566677777776663
No 265
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.74 E-value=0.00014 Score=56.48 Aligned_cols=73 Identities=18% Similarity=0.182 Sum_probs=58.1
Q ss_pred CeEEEEeCC-hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLD-EYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G-~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.|||-| .+|.+++..|.+.|..|++++... .++.+.+++||+||+++..+.-+.
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~~i~-------- 215 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKPDLIK-------- 215 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCCcCC--------
Confidence 589999999 999999999999999999986432 234577889999999998554321
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
.+.+++|++++|.+..
T Consensus 216 -~~~vk~GavVIDvGi~ 231 (285)
T PRK14191 216 -ASMVKKGAVVVDIGIN 231 (285)
T ss_pred -HHHcCCCcEEEEeecc
Confidence 2457899999999754
No 266
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.73 E-value=0.00057 Score=56.81 Aligned_cols=63 Identities=21% Similarity=0.277 Sum_probs=48.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH-----HHHHHHHcCCceec--ChhhhhcCCCEEEEe
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP-----LVDKFFMLGGIRSA--SPMDAGKDVSALVVV 65 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~-----~~~~~~~~g~~~~~--~~~~~~~~~dvii~~ 65 (173)
+||+|+|.|..|.++|+.|.+.|++|+++|+++. ..+.+.+.|+.... ...+.+.++|+||.+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S 84 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT 84 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC
Confidence 5899999999999999999999999999998652 22346666765432 223546789998887
No 267
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.72 E-value=0.00018 Score=55.98 Aligned_cols=73 Identities=22% Similarity=0.189 Sum_probs=58.5
Q ss_pred CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.|||-++ +|.+++..|.+.|..|++++.. +.++.+..+++|+||.++.-|.-+.
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvv~AvG~p~~i~-------- 222 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVF--------------TDDLKKYTLDADILVVATGVKHLIK-------- 222 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEecc--------------CCCHHHHHhhCCEEEEccCCccccC--------
Confidence 5799999999 9999999999999999999843 2356777899999999987544221
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
...+++|+++||.+..
T Consensus 223 -~~~vk~gavVIDvGin 238 (287)
T PRK14176 223 -ADMVKEGAVIFDVGIT 238 (287)
T ss_pred -HHHcCCCcEEEEeccc
Confidence 2357899999999764
No 268
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=97.71 E-value=0.0005 Score=52.72 Aligned_cols=110 Identities=11% Similarity=0.068 Sum_probs=67.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEE-EEcC----------ChHHHHHH---HH-cC------------CceecChhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQ-AFEI----------SDPLVDKF---FM-LG------------GIRSASPMDA 55 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~-~~d~----------~~~~~~~~---~~-~g------------~~~~~~~~~~ 55 (173)
.||.|.|+|++|+..++.|.+.|.+|+ +.|. +.+.++.+ .+ .+ .+.. +.++.
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~~~~~ 117 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-EGKKP 117 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-CCcch
Confidence 589999999999999999999999887 6662 22333221 11 11 2222 23333
Q ss_pred -hcCCCEEEEeccChhhhhhhhcCccchhhcC-CCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 56 -GKDVSALVVVISHVDQIDDIFFGHEGVLKGL-QKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 56 -~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l-~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
..+||+.+-|--.+....+.. +.+ .++..+|-.+...|-+. +..+.|.++|+.|+.+.
T Consensus 118 ~~~~~DIliPcAl~~~I~~~na-------~~i~~~~ak~I~EgAN~p~t~-~a~~~L~~rGI~vvPD~ 177 (254)
T cd05313 118 WEVPCDIAFPCATQNEVDAEDA-------KLLVKNGCKYVAEGANMPCTA-EAIEVFRQAGVLFAPGK 177 (254)
T ss_pred hcCCCcEEEeccccccCCHHHH-------HHHHHcCCEEEEeCCCCCCCH-HHHHHHHHCCcEEECch
Confidence 347999998865333222222 122 22444555544455544 67788999999987653
No 269
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=97.70 E-value=0.00033 Score=53.01 Aligned_cols=84 Identities=12% Similarity=-0.000 Sum_probs=61.7
Q ss_pred EEEEcCChHHHHHHHHc-CCceecChhhhh-cCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCC---CHHH
Q 044797 28 VQAFEISDPLVDKFFML-GGIRSASPMDAG-KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI---LPSH 102 (173)
Q Consensus 28 V~~~d~~~~~~~~~~~~-g~~~~~~~~~~~-~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~---~~~~ 102 (173)
+.+||+++++.+.+.+. |+...++.++++ .+.|+|++|+|...+.+... +.++.|+.++-.+.+ +.+.
T Consensus 5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~-------~aL~aGkhVl~~s~gAlad~e~ 77 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAE-------KILKNGKDLLIMSVGALADREL 77 (229)
T ss_pred EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHH-------HHHHCCCCEEEECCcccCCHHH
Confidence 46899999998887664 777888899886 57999999999655543332 456677766666553 4566
Q ss_pred HHHHHHHHhcCCceee
Q 044797 103 MQKLEKTFTGNLTFYI 118 (173)
Q Consensus 103 ~~~l~~~l~~~g~~~v 118 (173)
.+++.+..++.|.++.
T Consensus 78 ~~~l~~aA~~~g~~l~ 93 (229)
T TIGR03855 78 RERLREVARSSGRKVY 93 (229)
T ss_pred HHHHHHHHHhcCCEEE
Confidence 7888888888887653
No 270
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.70 E-value=0.00032 Score=58.27 Aligned_cols=63 Identities=21% Similarity=0.182 Sum_probs=47.7
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEe
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVV 65 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~ 65 (173)
+||.|+|+|..|.+.|+.|.+.|++|+++|+.+.....+...|+.......+.+.++|+||.+
T Consensus 10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s 72 (460)
T PRK01390 10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLS 72 (460)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence 479999999999999999999999999999876555455555765432222335678988864
No 271
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.68 E-value=0.00016 Score=57.01 Aligned_cols=64 Identities=13% Similarity=0.224 Sum_probs=47.3
Q ss_pred eEEEEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHH----HHH-c------CCceecChhhhhcCCCEEEEecc
Q 044797 4 KVGFVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDK----FFM-L------GGIRSASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 4 ~IgiiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~----~~~-~------g~~~~~~~~~~~~~~dvii~~v~ 67 (173)
||+|||+|.+|+.+|..|...+. ++.++|+++++++. +.+ . ..+...+..+.+++||+||++.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 79999999999999999988875 79999998776532 111 0 11222334567899999999864
No 272
>PRK14030 glutamate dehydrogenase; Provisional
Probab=97.67 E-value=0.0006 Score=56.21 Aligned_cols=110 Identities=14% Similarity=0.171 Sum_probs=67.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEE--------Ec---CChHHHHHH---HHc-------------CCceecChhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQA--------FE---ISDPLVDKF---FML-------------GGIRSASPMDA 55 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~--------~d---~~~~~~~~~---~~~-------------g~~~~~~~~~~ 55 (173)
.+|+|-|+|++|+..|+.|.+.|.+|++ || .+.++++.+ .+. +.+..+ .++.
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~-~~~~ 307 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFA-GKKP 307 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcC-Cccc
Confidence 5899999999999999999999999988 88 566653222 111 222222 2333
Q ss_pred -hcCCCEEEEeccChhhhhhhhcCccchhhcCCCCC-EEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 56 -GKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGA-VIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 56 -~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~-~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
..+||+.+-|.-.+....+.. +.+ .+.+. +|+...+. |. +.+..+.|.++|+.|+.+.
T Consensus 308 ~~~~cDVliPcAl~n~I~~~na---~~l---~~~~ak~V~EgAN~-p~-t~eA~~iL~~rGI~~vPD~ 367 (445)
T PRK14030 308 WEQKVDIALPCATQNELNGEDA---DKL---IKNGVLCVAEVSNM-GC-TAEAIDKFIAAKQLFAPGK 367 (445)
T ss_pred eeccccEEeeccccccCCHHHH---HHH---HHcCCeEEEeCCCC-CC-CHHHHHHHHHCCCEEeCcc
Confidence 346898888765333222222 112 12234 44444444 53 4456788889999987653
No 273
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.67 E-value=0.0011 Score=54.82 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=66.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH----HHHHHHHcCCcee--cChhhhhcC-CCEEEEec--cC-hhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP----LVDKFFMLGGIRS--ASPMDAGKD-VSALVVVI--SH-VDQI 72 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~----~~~~~~~~g~~~~--~~~~~~~~~-~dvii~~v--~~-~~~~ 72 (173)
+++.|+|.|.+|.++|+.|++.|++|+++|++.. ..+.+.+.|+... ....+.... .|+||... |. .+.+
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~~~~ 85 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTNPMV 85 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCCHHH
Confidence 5789999999999999999999999999998652 2244555576543 233444444 89887764 32 2222
Q ss_pred hhhhc------CccchhhcCCCCCEE-EEcCCCCHHHHHHHHHHHhcCCc
Q 044797 73 DDIFF------GHEGVLKGLQKGAVI-ILQSTILPSHMQKLEKTFTGNLT 115 (173)
Q Consensus 73 ~~v~~------~~~~i~~~l~~g~~i-i~~st~~~~~~~~l~~~l~~~g~ 115 (173)
..... .+.++...+.+..+| |.-|.++..++.-+...|+..|.
T Consensus 86 ~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~ 135 (447)
T PRK02472 86 EKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQ 135 (447)
T ss_pred HHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCC
Confidence 22211 011222222233444 34344555555666667765543
No 274
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.67 E-value=0.0005 Score=55.24 Aligned_cols=88 Identities=14% Similarity=0.139 Sum_probs=63.2
Q ss_pred eEEEEeCChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHH-cCCceecChh---------hhh--cCCCEEEEeccChh
Q 044797 4 KVGFVGLDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFM-LGGIRSASPM---------DAG--KDVSALVVVISHVD 70 (173)
Q Consensus 4 ~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~-~g~~~~~~~~---------~~~--~~~dvii~~v~~~~ 70 (173)
++.|+|+|.+|...++.+...| .+|++.|+++++++.+++ .+.....+.. +.. ..+|++|.|+..+.
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~ 250 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP 250 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence 6899999999999988888888 478888999999998887 4544333221 112 25999999998655
Q ss_pred hhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797 71 QIDDIFFGHEGVLKGLQKGAVIILQSTI 98 (173)
Q Consensus 71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~ 98 (173)
.+.+.+ +.++++-.++..+..
T Consensus 251 ~~~~ai-------~~~r~gG~v~~vGv~ 271 (350)
T COG1063 251 ALDQAL-------EALRPGGTVVVVGVY 271 (350)
T ss_pred HHHHHH-------HHhcCCCEEEEEecc
Confidence 444443 456777666666544
No 275
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.66 E-value=0.00077 Score=55.74 Aligned_cols=65 Identities=23% Similarity=0.163 Sum_probs=48.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh-HHH----HHHHHcCCce--ecChhhhhcCCCEEEEecc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD-PLV----DKFFMLGGIR--SASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~-~~~----~~~~~~g~~~--~~~~~~~~~~~dvii~~v~ 67 (173)
+++.|+|.|.+|.++|+.|++.|++|+++|+++ +.. +.+.+.|+.. .+...+...++|+||.+.-
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g 77 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPG 77 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCC
Confidence 689999999999999999999999999999985 333 3333445443 2223344567999998763
No 276
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.65 E-value=0.00072 Score=56.47 Aligned_cols=63 Identities=19% Similarity=0.127 Sum_probs=48.7
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHH-HHcCCceec--ChhhhhcCCCEEEEe
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKF-FMLGGIRSA--SPMDAGKDVSALVVV 65 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~-~~~g~~~~~--~~~~~~~~~dvii~~ 65 (173)
+||.|+|+|..|.++++.|.+.|++|+++|+++....++ .+.|+.... ...+.++++|+||.+
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTS 81 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeC
Confidence 679999999999999999999999999999887655443 334765532 233456788988876
No 277
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.64 E-value=0.00026 Score=56.26 Aligned_cols=113 Identities=10% Similarity=0.032 Sum_probs=66.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHC------C--CeE-EEEcCChHHH-------HHH---HHcC-C--ceec--Chhhhh-c
Q 044797 3 SKVGFVGLDEYSVDMAASLIRS------G--YKV-QAFEISDPLV-------DKF---FMLG-G--IRSA--SPMDAG-K 57 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~------g--~~V-~~~d~~~~~~-------~~~---~~~g-~--~~~~--~~~~~~-~ 57 (173)
|||+++|+|++|+.+++.|.+. | .+| .++|++.... +.+ .+.+ . .... +..++. .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 4899999999999999998773 3 443 4567653211 111 1111 1 1111 344443 4
Q ss_pred CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCH-HHHHHHHHHHhcCCceee
Q 044797 58 DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILP-SHMQKLEKTFTGNLTFYI 118 (173)
Q Consensus 58 ~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~-~~~~~l~~~l~~~g~~~v 118 (173)
++|++|-|+|....-.... .-+.+.++.|..++..+-... ....++.+..++++.++.
T Consensus 81 ~~DVvVE~t~~~~~g~~~~---~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~ 139 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREK---NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIR 139 (326)
T ss_pred CCCEEEECCCCCCcCchHH---HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEE
Confidence 6899999997432101111 123466788999997764221 224667777777777664
No 278
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.63 E-value=0.00039 Score=50.40 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=29.3
Q ss_pred eEEEEeCChhhHHHHHHHHHCCC-eEEEEcCCh
Q 044797 4 KVGFVGLDEYSVDMAASLIRSGY-KVQAFEISD 35 (173)
Q Consensus 4 ~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~ 35 (173)
||.|+|+|.+|+.+++.|.+.|. +++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 68999999999999999999997 599999875
No 279
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.63 E-value=0.00022 Score=53.66 Aligned_cols=64 Identities=20% Similarity=0.239 Sum_probs=51.2
Q ss_pred EEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChH--HHHHHHHcCCcee-------cChhhhhcCCCEEEEeccC
Q 044797 5 VGFVGL-DEYSVDMAASLIRSGYKVQAFEISDP--LVDKFFMLGGIRS-------ASPMDAGKDVSALVVVISH 68 (173)
Q Consensus 5 IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~--~~~~~~~~g~~~~-------~~~~~~~~~~dvii~~v~~ 68 (173)
|.|+|. |.+|..+++.|.+.+++|.+.-|++. ..+.+.+.|++.. +++.++++++|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 678875 99999999999999999999988864 4566777776532 2345678999999999983
No 280
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.62 E-value=0.0016 Score=54.72 Aligned_cols=63 Identities=14% Similarity=0.077 Sum_probs=46.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH--HHHHHHHc--CCceec--ChhhhhcCCCEEEEe
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP--LVDKFFML--GGIRSA--SPMDAGKDVSALVVV 65 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~--~~~~~~~~--g~~~~~--~~~~~~~~~dvii~~ 65 (173)
++|.|+|+|..|.++|+.|.+.|++|+++|.+.. ..+.+.+. |+.... ...+.+.++|+||..
T Consensus 8 ~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s 76 (498)
T PRK02006 8 PMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS 76 (498)
T ss_pred CEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence 4799999999999999999999999999997542 33445554 333322 234556789988886
No 281
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.62 E-value=0.00025 Score=56.97 Aligned_cols=90 Identities=17% Similarity=0.169 Sum_probs=55.8
Q ss_pred CCCeEEEEe-CChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH----c-----------CCceecChhhhhcCCCEEE
Q 044797 1 MASKVGFVG-LDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM----L-----------GGIRSASPMDAGKDVSALV 63 (173)
Q Consensus 1 m~~~IgiiG-~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~----~-----------g~~~~~~~~~~~~~~dvii 63 (173)
|++||+|+| .|.+|..+.+.|.++.. ++..+.+++++..+... . .........+.++++|+|+
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~DvVf 81 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAVDDVDIVF 81 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHhcCCCEEE
Confidence 458999997 89999999999987654 77777555443321111 0 0111111223447899999
Q ss_pred EeccChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797 64 VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 64 ~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st 97 (173)
.|+|... ..++. + .....|..+||.|.
T Consensus 82 ~a~p~~~-s~~~~---~---~~~~~G~~vIDls~ 108 (349)
T PRK08664 82 SALPSDV-AGEVE---E---EFAKAGKPVFSNAS 108 (349)
T ss_pred EeCChhH-HHHHH---H---HHHHCCCEEEECCc
Confidence 9999643 23333 1 12345778888875
No 282
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=97.61 E-value=0.00021 Score=56.46 Aligned_cols=80 Identities=11% Similarity=0.044 Sum_probs=53.5
Q ss_pred CCCeEEEEe-CChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797 1 MASKVGFVG-LDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFG 78 (173)
Q Consensus 1 m~~~IgiiG-~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~ 78 (173)
|+.||+|+| .|..|..+.+.|.++.. ++.....+..+ .. .+.++..+++|++|+|+|.... .+..
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-------~~---~~~~~~~~~~DvvFlalp~~~s-~~~~-- 67 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-------DA---AARRELLNAADVAILCLPDDAA-REAV-- 67 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-------cc---cCchhhhcCCCEEEECCCHHHH-HHHH--
Confidence 889999997 89999999999988763 44333222211 01 2234455789999999996543 3333
Q ss_pred ccchhhcCCCCCEEEEcCC
Q 044797 79 HEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 79 ~~~i~~~l~~g~~ii~~st 97 (173)
.+ ....|..|||.|+
T Consensus 68 -~~---~~~~g~~VIDlSa 82 (313)
T PRK11863 68 -AL---IDNPATRVIDAST 82 (313)
T ss_pred -HH---HHhCCCEEEECCh
Confidence 12 2356889999985
No 283
>PRK14031 glutamate dehydrogenase; Provisional
Probab=97.61 E-value=0.0008 Score=55.50 Aligned_cols=110 Identities=15% Similarity=0.147 Sum_probs=68.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEE-Ec----------CChHHHH---HHHHc------------CCceecChhhh-
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQA-FE----------ISDPLVD---KFFML------------GGIRSASPMDA- 55 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~-~d----------~~~~~~~---~~~~~------------g~~~~~~~~~~- 55 (173)
++|.|.|.|++|+..|+.|.+.|.+|++ .| .+.+++. .+.+. ++... +.++.
T Consensus 229 ~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~~d~~~ 307 (444)
T PRK14031 229 KVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-EGARPW 307 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-CCcccc
Confidence 6899999999999999999999999875 67 4554443 11111 22222 23333
Q ss_pred hcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797 56 GKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE 120 (173)
Q Consensus 56 ~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~ 120 (173)
-.+||+++-|.-.+....+.. +.+. .++..+|..+...|.+. +..+.+.++|+.++.+
T Consensus 308 ~~~cDIliPaAl~n~I~~~na---~~l~---a~g~~~V~EgAN~P~t~-eA~~~L~~rgI~~~PD 365 (444)
T PRK14031 308 GEKGDIALPSATQNELNGDDA---RQLV---ANGVIAVSEGANMPSTP-EAIKVFQDAKILYAPG 365 (444)
T ss_pred cCCCcEEeecccccccCHHHH---HHHH---hcCCeEEECCCCCCCCH-HHHHHHHHCCcEEeCh
Confidence 357999998876433222222 1121 23555666666566554 4556777889988754
No 284
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=97.61 E-value=0.0011 Score=54.92 Aligned_cols=112 Identities=16% Similarity=0.167 Sum_probs=68.6
Q ss_pred eEEEEeCChhhHH-HHHHHHHCCCeEEEEcCChH-HHHHHHHcCCceec-ChhhhhcCCCEEEEec--cC-hhhhhhhhc
Q 044797 4 KVGFVGLDEYSVD-MAASLIRSGYKVQAFEISDP-LVDKFFMLGGIRSA-SPMDAGKDVSALVVVI--SH-VDQIDDIFF 77 (173)
Q Consensus 4 ~IgiiG~G~mG~~-ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~-~~~~~~~~~dvii~~v--~~-~~~~~~v~~ 77 (173)
+|.|||.|..|.+ +|+.|.+.|++|+++|.++. ..+.+.+.|+.... ...+.++++|+||.+- |. .+.+.....
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~ 80 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE 80 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence 5889999999998 99999999999999997643 33456666766543 2234466799888753 32 222322211
Q ss_pred ------Cccchh-hcCCCCCEEE-EcCCCCHHHHHHHHHHHhcCCc
Q 044797 78 ------GHEGVL-KGLQKGAVII-LQSTILPSHMQKLEKTFTGNLT 115 (173)
Q Consensus 78 ------~~~~i~-~~l~~g~~ii-~~st~~~~~~~~l~~~l~~~g~ 115 (173)
.+.++. ..+++.++|. .-|.++..++.-+...|+..|.
T Consensus 81 ~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred cCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 011222 2222334443 4455666566677777776664
No 285
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.60 E-value=0.00061 Score=47.63 Aligned_cols=39 Identities=18% Similarity=0.129 Sum_probs=29.8
Q ss_pred ChhhhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797 51 SPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTI 98 (173)
Q Consensus 51 ~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~ 98 (173)
+.++.+++||+|++++..+.. +. .+.+++|++++|.+..
T Consensus 64 ~l~~~v~~ADIVvsAtg~~~~----i~-----~~~ikpGa~Vidvg~~ 102 (140)
T cd05212 64 QLQSKVHDADVVVVGSPKPEK----VP-----TEWIKPGATVINCSPT 102 (140)
T ss_pred CHHHHHhhCCEEEEecCCCCc----cC-----HHHcCCCCEEEEcCCC
Confidence 577889999999999985532 31 2468999999988754
No 286
>PRK05086 malate dehydrogenase; Provisional
Probab=97.60 E-value=0.00036 Score=55.22 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=45.2
Q ss_pred CeEEEEeC-ChhhHHHHHHHHH---CCCeEEEEcCChHHH---HHHHHcC--Cce----ecChhhhhcCCCEEEEecc
Q 044797 3 SKVGFVGL-DEYSVDMAASLIR---SGYKVQAFEISDPLV---DKFFMLG--GIR----SASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~---~g~~V~~~d~~~~~~---~~~~~~g--~~~----~~~~~~~~~~~dvii~~v~ 67 (173)
|||+|||+ |.+|++++..+.. .++++.++|+++... -.+.+.+ ... .+++.+.++++|+||+|.-
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG 78 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAG 78 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCC
Confidence 59999999 9999999988854 346899999885431 1122211 111 2344677889999999975
No 287
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.60 E-value=0.00062 Score=53.50 Aligned_cols=111 Identities=17% Similarity=0.231 Sum_probs=75.5
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhh---hhhhhc
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQ---IDDIFF 77 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~---~~~v~~ 77 (173)
+..+++|||.-.=-..+++.|.+.|++|.++.-+.+.. ...|+...++.+++++++|+|+..+|...+ ++..+.
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~~---~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~ 77 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQLDH---GFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFS 77 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecccccc---ccCCceeeccHHHHhccCCEEEECCccccCCceeecccc
Confidence 34689999999999999999999999999876543221 234778887888889999999999884221 111110
Q ss_pred C-----ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797 78 G-----HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL 119 (173)
Q Consensus 78 ~-----~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~ 119 (173)
. +.+..+.++++++++ .+...|. +.+.+.++|+..++
T Consensus 78 ~~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~~~~ 119 (296)
T PRK08306 78 NEKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRKLVE 119 (296)
T ss_pred ccCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCeEEE
Confidence 0 124567789998555 3555554 22445578887653
No 288
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=97.59 E-value=0.00086 Score=51.40 Aligned_cols=108 Identities=13% Similarity=0.077 Sum_probs=80.3
Q ss_pred EEEEeCChhhHHHHHHHHHCC---CeEEEEcCChHHHHHHHHc----------CCceecChhhhhcCCCEEEEeccChhh
Q 044797 5 VGFVGLDEYSVDMAASLIRSG---YKVQAFEISDPLVDKFFML----------GGIRSASPMDAGKDVSALVVVISHVDQ 71 (173)
Q Consensus 5 IgiiG~G~mG~~ia~~l~~~g---~~V~~~d~~~~~~~~~~~~----------g~~~~~~~~~~~~~~dvii~~v~~~~~ 71 (173)
..++|.|..+.....-..+.- .+|.+|+|+.+..+.+.+. .+....+.++++..+|+|+.|++.
T Consensus 141 L~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atls--- 217 (333)
T KOG3007|consen 141 LTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLS--- 217 (333)
T ss_pred EEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecccc---
Confidence 467899999999887665543 4899999999888776551 134567888999999999999974
Q ss_pred hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
.+.+++ .+.++||+.|--.++..|. .++..+.+-..+.-||+.+
T Consensus 218 tePilf-----gewlkpgthIdlVGsf~p~-mhEcDdelIq~a~vfVDsr 261 (333)
T KOG3007|consen 218 TEPILF-----GEWLKPGTHIDLVGSFKPV-MHECDDELIQSACVFVDSR 261 (333)
T ss_pred CCceee-----eeeecCCceEeeeccCCch-HHHHhHHHhhhheEEEecc
Confidence 345553 3568899888777777775 4556666656778888864
No 289
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=97.58 E-value=0.00066 Score=53.13 Aligned_cols=110 Identities=13% Similarity=0.050 Sum_probs=73.3
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHH-HHHHHHcCCceecChhhhhcC--CCEEEEeccChhhhhhhhcC
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPL-VDKFFMLGGIRSASPMDAGKD--VSALVVVISHVDQIDDIFFG 78 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~--~dvii~~v~~~~~~~~v~~~ 78 (173)
.||.|+|. |++|..+.++|.+.|++ .+|-.+|.+ .+. -.|.+...+..++-+. .|+.++++| +..+.+++
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~--v~G~~~y~sv~dlp~~~~~DlAvi~vp-~~~v~~~l-- 82 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFNTVAEAVEATGANASVIYVP-PPFAADAI-- 82 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCe--EeCeeccCCHHHHhhccCCCEEEEEcC-HHHHHHHH--
Confidence 58999997 88999999999999987 444333331 111 1377778888888876 899999999 55666666
Q ss_pred ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797 79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE 120 (173)
Q Consensus 79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~ 120 (173)
++..+.- -...+|-++....+..+++.+..+++|++.+..
T Consensus 83 -~e~~~~g-vk~avI~s~Gf~~~~~~~l~~~a~~~girvlGP 122 (291)
T PRK05678 83 -LEAIDAG-IDLIVCITEGIPVLDMLEVKAYLERKKTRLIGP 122 (291)
T ss_pred -HHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHcCCEEECC
Confidence 2333321 123334333334333458888888899987654
No 290
>PRK05442 malate dehydrogenase; Provisional
Probab=97.57 E-value=0.00073 Score=53.78 Aligned_cols=65 Identities=17% Similarity=0.184 Sum_probs=46.1
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCC-------eEEEEcCChH--HHHH----HHHc------CCceecChhhhhcCCCEE
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGY-------KVQAFEISDP--LVDK----FFML------GGIRSASPMDAGKDVSAL 62 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~-------~V~~~d~~~~--~~~~----~~~~------g~~~~~~~~~~~~~~dvi 62 (173)
+||+|||+ |.+|+.+|..|...+. ++.++|++++ +++. +.+. ......+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 69999998 9999999999887663 7999998643 2211 1110 223344556778999999
Q ss_pred EEecc
Q 044797 63 VVVIS 67 (173)
Q Consensus 63 i~~v~ 67 (173)
|++.-
T Consensus 85 VitaG 89 (326)
T PRK05442 85 LLVGA 89 (326)
T ss_pred EEeCC
Confidence 98763
No 291
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=97.57 E-value=0.00012 Score=58.30 Aligned_cols=61 Identities=15% Similarity=0.099 Sum_probs=45.1
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC-Cce-ec---ChhhhhcCCCEE
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG-GIR-SA---SPMDAGKDVSAL 62 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g-~~~-~~---~~~~~~~~~dvi 62 (173)
+++|||||.|+.|.+|+..-.+.|+++.+.|++++....-.+.. +.. .+ .+.++++.||+|
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DVi 66 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVI 66 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEE
Confidence 46899999999999999999999999999998876543322221 111 11 355677788876
No 292
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.55 E-value=0.00043 Score=53.70 Aligned_cols=73 Identities=21% Similarity=0.194 Sum_probs=58.1
Q ss_pred CeEEEEeCC-hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLD-EYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G-~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.|||-+ .+|.+++..|.++|..|+++.... .++.+..+.+|+||+++..+.-+.
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvGkp~~i~-------- 215 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVGKPNLIT-------- 215 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCcccccC--------
Confidence 578999988 899999999999999999886432 245677899999999998554322
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
.+.+++|+++||.+..
T Consensus 216 -~~~vk~gavvIDvGin 231 (281)
T PRK14183 216 -EDMVKEGAIVIDIGIN 231 (281)
T ss_pred -HHHcCCCcEEEEeecc
Confidence 2457899999999764
No 293
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.53 E-value=0.00038 Score=54.01 Aligned_cols=73 Identities=16% Similarity=0.133 Sum_probs=57.9
Q ss_pred CeEEEEeCC-hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLD-EYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G-~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
.++.|+|-+ ..|.+++..|...|..|+++.++. .++.+.+++||+||.+++-+. ++.
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~~----lv~---- 210 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKAG----FIT---- 210 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCccc----ccC----
Confidence 578899988 999999999999999999888653 246777889999999997442 231
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
...+++|+++||.+..
T Consensus 211 -~~~vk~GavVIDVgi~ 226 (279)
T PRK14178 211 -PDMVKPGATVIDVGIN 226 (279)
T ss_pred -HHHcCCCcEEEEeecc
Confidence 2346999999999754
No 294
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=97.53 E-value=0.0012 Score=52.77 Aligned_cols=111 Identities=12% Similarity=0.003 Sum_probs=62.1
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc----------CCceecChhhhhc--CCCEEEEeccC
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML----------GGIRSASPMDAGK--DVSALVVVISH 68 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~----------g~~~~~~~~~~~~--~~dvii~~v~~ 68 (173)
..||.|||+|.+|+.+++.|...|. +++++|.+.-....+..+ |...+....+.++ +.++-+.....
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~ 103 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQ 103 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEec
Confidence 3689999999999999999999997 899999874322222111 1011111111121 34444444332
Q ss_pred hhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797 69 VDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE 120 (173)
Q Consensus 69 ~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~ 120 (173)
... .+ .+.+.+++-++|++++. .+.+...+.+.....++.++..
T Consensus 104 ~~~-~~------~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~~~iP~i~~ 147 (339)
T PRK07688 104 DVT-AE------ELEELVTGVDLIIDATD-NFETRFIVNDAAQKYGIPWIYG 147 (339)
T ss_pred cCC-HH------HHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHHhCCCEEEE
Confidence 111 11 11223445577887755 3555556666666677766543
No 295
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=97.52 E-value=0.0014 Score=50.72 Aligned_cols=88 Identities=18% Similarity=0.224 Sum_probs=62.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHHHcCCceecCh---hhh----h--cCCCEEEEeccChhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFFMLGGIRSASP---MDA----G--KDVSALVVVISHVDQI 72 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~~~~~---~~~----~--~~~dvii~~v~~~~~~ 72 (173)
.+|.|+|.|.+|...++.+...|.+ |++.++++++.+.+.+.|+...-+. .+. . ...|+++-++..+..+
T Consensus 122 ~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~~~ 201 (280)
T TIGR03366 122 RRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATAAV 201 (280)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChHHH
Confidence 4688999999999999999999986 8888999999888887776432221 111 1 2479999998655444
Q ss_pred hhhhcCccchhhcCCCCCEEEEcCC
Q 044797 73 DDIFFGHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 73 ~~v~~~~~~i~~~l~~g~~ii~~st 97 (173)
+..+ ..++++..++..+.
T Consensus 202 ~~~~-------~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 202 RACL-------ESLDVGGTAVLAGS 219 (280)
T ss_pred HHHH-------HHhcCCCEEEEecc
Confidence 4443 45667666766553
No 296
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.52 E-value=0.00084 Score=55.44 Aligned_cols=65 Identities=15% Similarity=0.071 Sum_probs=49.2
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHC-------CC--eEEEEcCChHHHHHHH----H----c--CCceecChhhhhcCCCEE
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRS-------GY--KVQAFEISDPLVDKFF----M----L--GGIRSASPMDAGKDVSAL 62 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~-------g~--~V~~~d~~~~~~~~~~----~----~--g~~~~~~~~~~~~~~dvi 62 (173)
-||+|||+ |++|+.+|..|... +. ++..+|++.++++... + . .+....+..+.++++|+|
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV 180 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA 180 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence 48999999 99999999999887 54 7899999988775321 1 1 223334556778999999
Q ss_pred EEecc
Q 044797 63 VVVIS 67 (173)
Q Consensus 63 i~~v~ 67 (173)
|++.-
T Consensus 181 VitAG 185 (444)
T PLN00112 181 LLIGA 185 (444)
T ss_pred EECCC
Confidence 99863
No 297
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=97.51 E-value=0.00022 Score=51.79 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=47.0
Q ss_pred CCeEEEEeCChhhHHHHHH--HHHCCCeE-EEEcCChHHHHHHHHc-CCceecChhhhhc--CCCEEEEeccC
Q 044797 2 ASKVGFVGLDEYSVDMAAS--LIRSGYKV-QAFEISDPLVDKFFML-GGIRSASPMDAGK--DVSALVVVISH 68 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~--l~~~g~~V-~~~d~~~~~~~~~~~~-g~~~~~~~~~~~~--~~dvii~~v~~ 68 (173)
+.++.+||+|++|.+++.. ..+.|+++ -++|.+++.+...... -+.-.++++..++ +.|+.++|||.
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa 156 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA 156 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence 3578999999999999964 34677776 5899999876543221 1122334555555 68899999994
No 298
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=97.51 E-value=0.0013 Score=50.62 Aligned_cols=58 Identities=16% Similarity=0.124 Sum_probs=44.3
Q ss_pred eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhc-CCCEEEEec
Q 044797 9 GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGK-DVSALVVVI 66 (173)
Q Consensus 9 G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~~dvii~~v 66 (173)
|.|.+|+++...|.+.||+|++..|++.+.+......+...+..++... ++|+||--.
T Consensus 6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLA 64 (297)
T COG1090 6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLA 64 (297)
T ss_pred cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECC
Confidence 7899999999999999999999999988776544433333344555555 699998654
No 299
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.50 E-value=0.00036 Score=55.61 Aligned_cols=58 Identities=14% Similarity=0.211 Sum_probs=42.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEe
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVV 65 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~ 65 (173)
+++.+||+|.||.-.+++|.++|. ++++.||+....+ +.+.. ...-+....+|+||+|
T Consensus 175 k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~-~~~~~----~~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 175 ASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLP-YRTVV----REELSFQDPYDVIFFG 233 (338)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccc-hhhhh----hhhhhcccCCCEEEEc
Confidence 589999999999999999999995 6999999975411 11110 0111334689999987
No 300
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.50 E-value=0.0015 Score=51.92 Aligned_cols=65 Identities=17% Similarity=0.241 Sum_probs=46.4
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCC-------eEEEEcCCh--HHHHH----HHHc------CCceecChhhhhcCCCEE
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGY-------KVQAFEISD--PLVDK----FFML------GGIRSASPMDAGKDVSAL 62 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~-------~V~~~d~~~--~~~~~----~~~~------g~~~~~~~~~~~~~~dvi 62 (173)
.||+|||+ |.+|+.++..|...+. ++.++|+++ ++++. +.+. +.....+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 58999998 9999999999988874 799999965 22321 1111 122334456778999999
Q ss_pred EEecc
Q 044797 63 VVVIS 67 (173)
Q Consensus 63 i~~v~ 67 (173)
|++.-
T Consensus 84 VitAG 88 (323)
T TIGR01759 84 LLVGA 88 (323)
T ss_pred EEeCC
Confidence 99863
No 301
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.50 E-value=0.00076 Score=53.60 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=46.7
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCC-------eEEEEcCChHH--HHH----HHHc------CCceecChhhhhcCCCEE
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGY-------KVQAFEISDPL--VDK----FFML------GGIRSASPMDAGKDVSAL 62 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~-------~V~~~d~~~~~--~~~----~~~~------g~~~~~~~~~~~~~~dvi 62 (173)
+||+|||+ |++|+.++..|...|. ++.++|++++. ++. +.+. .+....+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 69999999 9999999999988774 79999995432 221 1110 123334556778999999
Q ss_pred EEecc
Q 044797 63 VVVIS 67 (173)
Q Consensus 63 i~~v~ 67 (173)
|++.-
T Consensus 83 vitaG 87 (322)
T cd01338 83 LLVGA 87 (322)
T ss_pred EEeCC
Confidence 99863
No 302
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=97.50 E-value=0.0015 Score=52.23 Aligned_cols=88 Identities=17% Similarity=0.156 Sum_probs=62.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcC---ChHHHHHHHHcCCceecChhh------hhcCCCEEEEeccChhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEI---SDPLVDKFFMLGGIRSASPMD------AGKDVSALVVVISHVDQID 73 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~---~~~~~~~~~~~g~~~~~~~~~------~~~~~dvii~~v~~~~~~~ 73 (173)
.+|.|+|+|.+|...++.+...|.+|+++++ ++++.+.+.+.|+......++ .....|++|-++..+..+.
T Consensus 174 ~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~~~~ 253 (355)
T cd08230 174 RRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPPLAF 253 (355)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHHHHH
Confidence 4788999999999999999999999999998 678888777777654322111 1235799999997544343
Q ss_pred hhhcCccchhhcCCCCCEEEEcCC
Q 044797 74 DIFFGHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 74 ~v~~~~~~i~~~l~~g~~ii~~st 97 (173)
..+ ..++++..++..+.
T Consensus 254 ~~~-------~~l~~~G~~v~~G~ 270 (355)
T cd08230 254 EAL-------PALAPNGVVILFGV 270 (355)
T ss_pred HHH-------HHccCCcEEEEEec
Confidence 333 45666666665543
No 303
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.49 E-value=8.8e-05 Score=55.47 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=46.4
Q ss_pred CeEEEEeCChhhHHHHHHH--HHCCCeEE-EEcCChHHHHHHHHcC--CceecChhhhhc--CCCEEEEeccChh
Q 044797 3 SKVGFVGLDEYSVDMAASL--IRSGYKVQ-AFEISDPLVDKFFMLG--GIRSASPMDAGK--DVSALVVVISHVD 70 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l--~~~g~~V~-~~d~~~~~~~~~~~~g--~~~~~~~~~~~~--~~dvii~~v~~~~ 70 (173)
.+|++||+|.+|..+++.+ ...|+++. ++|+++++..... .+ +...++..+.++ +.|.+++|+|...
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~ 158 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAEA 158 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCchh
Confidence 4799999999999999864 35677765 6788877653222 12 222344566664 4999999999644
No 304
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=97.49 E-value=0.0014 Score=51.54 Aligned_cols=116 Identities=12% Similarity=0.070 Sum_probs=79.7
Q ss_pred CCeEEEEeCChhhHHHHHHHHH--CCCeEEEEcCChHHHHHHHHc-------------------CCceecChhhhhcCCC
Q 044797 2 ASKVGFVGLDEYSVDMAASLIR--SGYKVQAFEISDPLVDKFFML-------------------GGIRSASPMDAGKDVS 60 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~--~g~~V~~~d~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~d 60 (173)
|+||.-||+|.+|.+-..-++- -..+|++.|.+.+++..+... ..-..++.+.+++++|
T Consensus 1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ead 80 (481)
T KOG2666|consen 1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEAD 80 (481)
T ss_pred CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcc
Confidence 4789999999999987665432 235789999998888654221 1235667888999999
Q ss_pred EEEEeccChhhhhh-----------hhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhc--CCcee
Q 044797 61 ALVVVISHVDQIDD-----------IFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTG--NLTFY 117 (173)
Q Consensus 61 vii~~v~~~~~~~~-----------v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~--~g~~~ 117 (173)
+||+.+..|..+.. +-....-+.+.-...++++.-||......+.+...+.. .|++|
T Consensus 81 lvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~f 150 (481)
T KOG2666|consen 81 LVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKF 150 (481)
T ss_pred eEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCcee
Confidence 99999865532211 10000124444567789999999988888888888853 46665
No 305
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.49 E-value=0.00046 Score=54.72 Aligned_cols=91 Identities=15% Similarity=0.110 Sum_probs=56.2
Q ss_pred CCCeEEEEe-CChhhHHHHHHHHHCC-CeEEEEcCChHHHHHHHHc-----CC---ce-ecChhhh-hcCCCEEEEeccC
Q 044797 1 MASKVGFVG-LDEYSVDMAASLIRSG-YKVQAFEISDPLVDKFFML-----GG---IR-SASPMDA-GKDVSALVVVISH 68 (173)
Q Consensus 1 m~~~IgiiG-~G~mG~~ia~~l~~~g-~~V~~~d~~~~~~~~~~~~-----g~---~~-~~~~~~~-~~~~dvii~~v~~ 68 (173)
||+||+|+| .|.-|.-+.+.|..+- .++..+..+..+=+.+.+. |. .. .-+.++. .++||++|+|+|+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPh 80 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPH 80 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCc
Confidence 789999995 6999999999998876 4655554333222222221 11 11 1122332 4569999999997
Q ss_pred hhhhhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797 69 VDQIDDIFFGHEGVLKGLQKGAVIILQSTI 98 (173)
Q Consensus 69 ~~~~~~v~~~~~~i~~~l~~g~~ii~~st~ 98 (173)
....+-+- +.+.+|..|||.|+-
T Consensus 81 g~s~~~v~-------~l~~~g~~VIDLSad 103 (349)
T COG0002 81 GVSAELVP-------ELLEAGCKVIDLSAD 103 (349)
T ss_pred hhHHHHHH-------HHHhCCCeEEECCcc
Confidence 65443332 234567779999873
No 306
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.49 E-value=0.00054 Score=45.27 Aligned_cols=65 Identities=12% Similarity=-0.004 Sum_probs=46.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-ecChhhhhcCCCEEEEeccChhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-SASPMDAGKDVSALVVVISHVDQ 71 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-~~~~~~~~~~~dvii~~v~~~~~ 71 (173)
.+|.|||.|.+|..=++.|++.|.+|+++.++.+..+ ..++. ....++.++++++|+.++.++..
T Consensus 8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----~~i~~~~~~~~~~l~~~~lV~~at~d~~~ 73 (103)
T PF13241_consen 8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----GLIQLIRREFEEDLDGADLVFAATDDPEL 73 (103)
T ss_dssp -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----TSCEEEESS-GGGCTTESEEEE-SS-HHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----hHHHHHhhhHHHHHhhheEEEecCCCHHH
Confidence 5799999999999999999999999999998862111 22222 12334567889999998876543
No 307
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=97.49 E-value=0.00054 Score=55.71 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=37.6
Q ss_pred CeEEEEeCChhhHHH-HHHHHHCCCeEEEEcCChHHHHHHHHcC
Q 044797 3 SKVGFVGLDEYSVDM-AASLIRSGYKVQAFEISDPLVDKFFMLG 45 (173)
Q Consensus 3 ~~IgiiG~G~mG~~i-a~~l~~~g~~V~~~d~~~~~~~~~~~~g 45 (173)
|||.++|+|++|++. ...|.+.|++|++.|++++..+.+.++|
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qg 44 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRK 44 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCC
Confidence 589999999999855 7778889999999999998888887765
No 308
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=97.47 E-value=0.0015 Score=53.91 Aligned_cols=114 Identities=11% Similarity=0.047 Sum_probs=66.8
Q ss_pred eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH-HH---H-HH-HcCCceec-ChhhhhcCCCEEEEec--cC-hhhhh
Q 044797 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL-VD---K-FF-MLGGIRSA-SPMDAGKDVSALVVVI--SH-VDQID 73 (173)
Q Consensus 4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~-~~---~-~~-~~g~~~~~-~~~~~~~~~dvii~~v--~~-~~~~~ 73 (173)
||.|||+|..|.++|+.|.+.|++|+++|.++.. .. . +. ..|+.... ...+.++++|+||... |. .+.+.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~ 80 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQ 80 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHH
Confidence 5899999999999999999999999999976432 11 1 22 24665432 1244567899887754 32 12222
Q ss_pred hhhc------CccchhhcCCCCCEEE-EcCCCCHHHHHHHHHHHhcCCcee
Q 044797 74 DIFF------GHEGVLKGLQKGAVII-LQSTILPSHMQKLEKTFTGNLTFY 117 (173)
Q Consensus 74 ~v~~------~~~~i~~~l~~g~~ii-~~st~~~~~~~~l~~~l~~~g~~~ 117 (173)
.... .+.++...+.+.++|. .-|.++..++.-+...|+..|..+
T Consensus 81 ~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~ 131 (433)
T TIGR01087 81 AAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKA 131 (433)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCe
Confidence 2110 0112322222334453 444556556667777777666543
No 309
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=97.47 E-value=0.0018 Score=51.65 Aligned_cols=87 Identities=11% Similarity=0.078 Sum_probs=62.9
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceec-----Chhhhhc---CCCEEEEeccChhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSA-----SPMDAGK---DVSALVVVISHVDQID 73 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~-----~~~~~~~---~~dvii~~v~~~~~~~ 73 (173)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+...- +..+..+ ..|++|-++..+..+.
T Consensus 171 ~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~~~~ 250 (343)
T PRK09880 171 KRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPSSIN 250 (343)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHHHHH
Confidence 478899999999999999999998 688999999999988888864321 1222222 3799999987544443
Q ss_pred hhhcCccchhhcCCCCCEEEEcC
Q 044797 74 DIFFGHEGVLKGLQKGAVIILQS 96 (173)
Q Consensus 74 ~v~~~~~~i~~~l~~g~~ii~~s 96 (173)
..+ +.++++..++..+
T Consensus 251 ~~~-------~~l~~~G~iv~~G 266 (343)
T PRK09880 251 TCL-------EVTRAKGVMVQVG 266 (343)
T ss_pred HHH-------HHhhcCCEEEEEc
Confidence 333 4566777777654
No 310
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.47 E-value=0.0018 Score=54.13 Aligned_cols=64 Identities=20% Similarity=0.190 Sum_probs=47.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH-----HHHHHHHcCCceecC-hhhhhcCCCEEEEec
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP-----LVDKFFMLGGIRSAS-PMDAGKDVSALVVVI 66 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~-----~~~~~~~~g~~~~~~-~~~~~~~~dvii~~v 66 (173)
++|.|||.|..|..+|+.|.+.|++|+++|+++. ..+.+.+.|++.... ..+...++|+||.+.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~ 86 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSP 86 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECC
Confidence 4799999999999999999999999999996642 123455567665321 112345689999875
No 311
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.46 E-value=0.00083 Score=52.93 Aligned_cols=64 Identities=14% Similarity=0.175 Sum_probs=45.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCC--CeEEEEcCChHHHHH----HHH------cCCceec-ChhhhhcCCCEEEEec
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSG--YKVQAFEISDPLVDK----FFM------LGGIRSA-SPMDAGKDVSALVVVI 66 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~----~~~------~g~~~~~-~~~~~~~~~dvii~~v 66 (173)
+||+|||.|++|+++|..|...+ .++.++|++.++.+- +.+ ....... ...+.++++|+|+++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 58999999999999999997665 389999999655432 111 0122222 2246688999999987
No 312
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.46 E-value=0.0064 Score=49.48 Aligned_cols=65 Identities=14% Similarity=0.086 Sum_probs=46.1
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCC-----eE--EEE--cCChHHHHHHH----H----c--CCceecChhhhhcCCCEE
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGY-----KV--QAF--EISDPLVDKFF----M----L--GGIRSASPMDAGKDVSAL 62 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~-----~V--~~~--d~~~~~~~~~~----~----~--g~~~~~~~~~~~~~~dvi 62 (173)
-||+|||+ |++|+.+|..|...+. ++ .++ |++.++++... + . .+....+..+.+++||+|
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIV 124 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWA 124 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEE
Confidence 48999999 9999999999988773 23 344 88887764321 1 1 223334556778999999
Q ss_pred EEecc
Q 044797 63 VVVIS 67 (173)
Q Consensus 63 i~~v~ 67 (173)
|++.-
T Consensus 125 VitAG 129 (387)
T TIGR01757 125 LLIGA 129 (387)
T ss_pred EECCC
Confidence 99753
No 313
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.45 E-value=0.0013 Score=48.74 Aligned_cols=111 Identities=9% Similarity=0.008 Sum_probs=63.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH--------cCCceecChhhhhc--CCCEEEEeccChhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM--------LGGIRSASPMDAGK--DVSALVVVISHVDQ 71 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~~dvii~~v~~~~~ 71 (173)
.||.|+|+|.+|+.++++|...|. +++++|.+.=....+.. .|-..+....+.++ +.++-+.+.+....
T Consensus 22 ~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~ 101 (202)
T TIGR02356 22 SHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERVT 101 (202)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcCC
Confidence 589999999999999999999996 89999987321111111 12111111112221 23444444432111
Q ss_pred hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
.+ .+.+.+.+-++++++.. .+.....+.+.+.++++.++...
T Consensus 102 -~~------~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~ip~i~~~ 143 (202)
T TIGR02356 102 -AE------NLELLINNVDLVLDCTD-NFATRYLINDACVALGTPLISAA 143 (202)
T ss_pred -HH------HHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEE
Confidence 11 12223445567887754 45555667777778888877653
No 314
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.44 E-value=0.00092 Score=53.24 Aligned_cols=66 Identities=17% Similarity=0.065 Sum_probs=47.4
Q ss_pred EEEEeCChhhHHHHHHHHHC-CCeEE-EEcCChHHHHHHHH-cC------------------CceecChhhhhcCCCEEE
Q 044797 5 VGFVGLDEYSVDMAASLIRS-GYKVQ-AFEISDPLVDKFFM-LG------------------GIRSASPMDAGKDVSALV 63 (173)
Q Consensus 5 IgiiG~G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~~~~-~g------------------~~~~~~~~~~~~~~dvii 63 (173)
|||+|+|.+|...++.+.+. +.++. +.|.+++....+.. .+ +....+++++++++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 68999999999999998754 46765 56777775444433 12 223446788888999999
Q ss_pred EeccChh
Q 044797 64 VVISHVD 70 (173)
Q Consensus 64 ~~v~~~~ 70 (173)
.|+|...
T Consensus 81 e~Tp~~~ 87 (333)
T TIGR01546 81 DATPGGI 87 (333)
T ss_pred ECCCCCC
Confidence 9998543
No 315
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=97.44 E-value=0.0034 Score=46.85 Aligned_cols=110 Identities=16% Similarity=0.125 Sum_probs=70.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh-HHHHHHHHcC-Cceec--ChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD-PLVDKFFMLG-GIRSA--SPMDAGKDVSALVVVISHVDQIDDIFFG 78 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~-~~~~~~~~~g-~~~~~--~~~~~~~~~dvii~~v~~~~~~~~v~~~ 78 (173)
++|.|||.|..|..=++.|++.|.+|+++.... +....+.+.+ +.... -..+.+.++++||.++.++..-+.+...
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d~~ln~~i~~~ 92 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDDEELNERIAKA 92 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCCHHHHHHHHHH
Confidence 579999999999999999999999999998775 5555555443 22111 1123345599999999965433333211
Q ss_pred cc------------c----hhh-cCCCCCEEEEcCCC--CHHHHHHHHHHHhc
Q 044797 79 HE------------G----VLK-GLQKGAVIILQSTI--LPSHMQKLEKTFTG 112 (173)
Q Consensus 79 ~~------------~----i~~-~l~~g~~ii~~st~--~~~~~~~l~~~l~~ 112 (173)
.. + +.+ ....+.+.|.+||. +|...+.+.+.+.+
T Consensus 93 a~~~~i~vNv~D~p~~~~f~~Pa~~~r~~l~iaIsT~G~sP~la~~ir~~Ie~ 145 (210)
T COG1648 93 ARERRILVNVVDDPELCDFIFPAIVDRGPLQIAISTGGKSPVLARLLREKIEA 145 (210)
T ss_pred HHHhCCceeccCCcccCceecceeeccCCeEEEEECCCCChHHHHHHHHHHHH
Confidence 00 0 111 13346677777664 48777777777654
No 316
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.43 E-value=0.00051 Score=54.59 Aligned_cols=64 Identities=16% Similarity=0.198 Sum_probs=46.3
Q ss_pred eEEEEeC-ChhhHHHHHHHHHCCC-------eEEEEcCCh--HHHHHH----HHc------CCceecChhhhhcCCCEEE
Q 044797 4 KVGFVGL-DEYSVDMAASLIRSGY-------KVQAFEISD--PLVDKF----FML------GGIRSASPMDAGKDVSALV 63 (173)
Q Consensus 4 ~IgiiG~-G~mG~~ia~~l~~~g~-------~V~~~d~~~--~~~~~~----~~~------g~~~~~~~~~~~~~~dvii 63 (173)
||+|+|+ |.+|+.++..|...+. ++.++|+++ ++.+.. .+. +.....+..+.+++||+||
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV 81 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI 81 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence 8999999 9999999999987662 599999987 543211 110 1223345668899999999
Q ss_pred Eecc
Q 044797 64 VVIS 67 (173)
Q Consensus 64 ~~v~ 67 (173)
++.-
T Consensus 82 itAG 85 (323)
T cd00704 82 LVGA 85 (323)
T ss_pred EeCC
Confidence 8763
No 317
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=97.43 E-value=0.0024 Score=50.30 Aligned_cols=61 Identities=13% Similarity=0.167 Sum_probs=45.0
Q ss_pred EEeCChhhHHHHHHHHHCCC--eEEEEcCChHHHHHH----HH------cCCceecChhhhhcCCCEEEEecc
Q 044797 7 FVGLDEYSVDMAASLIRSGY--KVQAFEISDPLVDKF----FM------LGGIRSASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 7 iiG~G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~~----~~------~g~~~~~~~~~~~~~~dvii~~v~ 67 (173)
|||+|++|+.+|..|...+. ++.++|++.++++.. .+ ...+...+..+.+++||+||++.-
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag 73 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAG 73 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCC
Confidence 68999999999999988774 799999987765432 11 112334344577899999999864
No 318
>PLN00106 malate dehydrogenase
Probab=97.43 E-value=0.0017 Score=51.70 Aligned_cols=65 Identities=11% Similarity=0.076 Sum_probs=45.9
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCC--eEEEEcCChHHHH--HHHHc----CCce---ecChhhhhcCCCEEEEecc
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGY--KVQAFEISDPLVD--KFFML----GGIR---SASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~--~~~~~----g~~~---~~~~~~~~~~~dvii~~v~ 67 (173)
.||+|||+ |++|+.++..|...+. ++.++|+++...+ .+.+. .+.. .++..+.++++|+||++.-
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 58999999 9999999999987664 8999999872211 11111 1111 2234678999999999864
No 319
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.42 E-value=0.0024 Score=52.87 Aligned_cols=114 Identities=11% Similarity=0.030 Sum_probs=67.4
Q ss_pred eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH--HHHHHHH--cCCceec--ChhhhhcCCCEEEEec--cC-hhhhhh
Q 044797 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP--LVDKFFM--LGGIRSA--SPMDAGKDVSALVVVI--SH-VDQIDD 74 (173)
Q Consensus 4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~--~~~~~~~--~g~~~~~--~~~~~~~~~dvii~~v--~~-~~~~~~ 74 (173)
.|.|+|+|..|.++|+.|.+.|++|+++|.++. ..+.+.+ .|+.... ...+.+.++|+||.+- |. .+.+..
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~~~ 87 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPALRA 87 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHHHH
Confidence 589999999999999999999999999997643 2234554 2665532 2344567889887753 32 122222
Q ss_pred hhc------CccchhhcCCCCCEEEEc-CCCCHHHHHHHHHHHhcCCcee
Q 044797 75 IFF------GHEGVLKGLQKGAVIILQ-STILPSHMQKLEKTFTGNLTFY 117 (173)
Q Consensus 75 v~~------~~~~i~~~l~~g~~ii~~-st~~~~~~~~l~~~l~~~g~~~ 117 (173)
... .+.++...+.+..+|.-+ |.++..++.-+...|...|..+
T Consensus 88 a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~ 137 (448)
T PRK03803 88 AAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRV 137 (448)
T ss_pred HHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCe
Confidence 110 011232222233455433 4455555666667777666543
No 320
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=97.42 E-value=0.0015 Score=53.96 Aligned_cols=117 Identities=11% Similarity=0.063 Sum_probs=70.0
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHH----HHHHHcCCceec--ChhhhhcCCCEEEEec--c-Chhhh
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLV----DKFFMLGGIRSA--SPMDAGKDVSALVVVI--S-HVDQI 72 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~----~~~~~~g~~~~~--~~~~~~~~~dvii~~v--~-~~~~~ 72 (173)
.+||.|+|+|.-|.+.++.|.+.|++|+++|.++... ..+...++.... ...+...++|+|+..- | +.+.+
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~v 86 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPLV 86 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHHH
Confidence 3799999999999999999999999999999766551 122233443322 1225577899988863 2 11222
Q ss_pred hhhhc-C-----ccchhhcCC-CCCEE-EEcCCCCHHHHHHHHHHHhcCCceee
Q 044797 73 DDIFF-G-----HEGVLKGLQ-KGAVI-ILQSTILPSHMQKLEKTFTGNLTFYI 118 (173)
Q Consensus 73 ~~v~~-~-----~~~i~~~l~-~g~~i-i~~st~~~~~~~~l~~~l~~~g~~~v 118 (173)
+.... + +-++.-... +..+| |.-|+++.-++.-+...+...|....
T Consensus 87 ~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~ 140 (448)
T COG0771 87 EAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDAL 140 (448)
T ss_pred HHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCce
Confidence 22221 0 111222221 33344 34455666666777777777776543
No 321
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.41 E-value=0.00091 Score=52.86 Aligned_cols=63 Identities=13% Similarity=0.098 Sum_probs=44.9
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCC--CeEEEEcCChHHHHH----HHHc--CCcee---c--ChhhhhcCCCEEEEecc
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSG--YKVQAFEISDPLVDK----FFML--GGIRS---A--SPMDAGKDVSALVVVIS 67 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~----~~~~--g~~~~---~--~~~~~~~~~dvii~~v~ 67 (173)
|||+|||+ |++|+.+|..|...+ .++.++|++ +++. +.+. ..... . ++.+.++++|+||++.-
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG 77 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAG 77 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--ccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCC
Confidence 59999999 999999999998888 479999988 3211 1211 11222 1 23577899999999864
No 322
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=97.41 E-value=0.0017 Score=53.55 Aligned_cols=111 Identities=9% Similarity=0.042 Sum_probs=70.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEE-EEcCC----------hHHHHHHHH---c-------------CCceecChhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQ-AFEIS----------DPLVDKFFM---L-------------GGIRSASPMDA 55 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~-~~d~~----------~~~~~~~~~---~-------------g~~~~~~~~~~ 55 (173)
++|.|-|.|++|...|+.|.+.|.+|+ +.|.+ .++++.+.+ . +.+.....+-+
T Consensus 238 k~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~~~ 317 (454)
T PTZ00079 238 KTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKKPW 317 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCcCcc
Confidence 589999999999999999999999887 78877 555533221 0 22222222222
Q ss_pred hcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797 56 GKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE 120 (173)
Q Consensus 56 ~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~ 120 (173)
..+||+.+-|.-.+....+-. ......+..+|..++..|.+. +..+.|.++|+.|+.+
T Consensus 318 ~~~cDI~iPcA~~n~I~~~~a------~~l~~~~ak~V~EgAN~p~t~-eA~~~L~~~GI~~~PD 375 (454)
T PTZ00079 318 EVPCDIAFPCATQNEINLEDA------KLLIKNGCKLVAEGANMPTTI-EATHLFKKNGVIFCPG 375 (454)
T ss_pred cCCccEEEeccccccCCHHHH------HHHHHcCCeEEEecCCCCCCH-HHHHHHHHCCcEEECh
Confidence 347998888865332211111 111244566666666566554 6677888999998754
No 323
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=97.41 E-value=0.00086 Score=51.24 Aligned_cols=112 Identities=17% Similarity=0.105 Sum_probs=65.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEE--------cCChHHHHHHHH---c-CC--ceec----------Ch-hhhh-
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAF--------EISDPLVDKFFM---L-GG--IRSA----------SP-MDAG- 56 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~--------d~~~~~~~~~~~---~-g~--~~~~----------~~-~~~~- 56 (173)
+++.|-|.|++|...++.|.+.|.++.+. |++.-..+.+.+ . +. .... +. ++.+
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~ 112 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILS 112 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccccccc
Confidence 58999999999999999999999877544 655444444332 2 22 1111 12 1444
Q ss_pred cCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 57 KDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 57 ~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
.+||+++.|--.+....+.+ ...++++..+|-.+...|-+.+ -.+.|.++|+.++.+.
T Consensus 113 ~~~DiliP~A~~~~I~~~~~------~~~i~~~akiIvegAN~p~t~~-a~~~L~~rGI~viPD~ 170 (244)
T PF00208_consen 113 VDCDILIPCALGNVINEDNA------PSLIKSGAKIIVEGANGPLTPE-ADEILRERGILVIPDF 170 (244)
T ss_dssp SSSSEEEEESSSTSBSCHHH------CHCHHTT-SEEEESSSSSBSHH-HHHHHHHTT-EEE-HH
T ss_pred ccccEEEEcCCCCeeCHHHH------HHHHhccCcEEEeCcchhccHH-HHHHHHHCCCEEEcch
Confidence 58999999965333222222 1134445555544444454433 3448889999988764
No 324
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.41 E-value=0.00071 Score=53.86 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=45.5
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCC-------CeEEEEcCChHH--HHH----HHH-----c-CCceecChhhhhcCCCEE
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSG-------YKVQAFEISDPL--VDK----FFM-----L-GGIRSASPMDAGKDVSAL 62 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g-------~~V~~~d~~~~~--~~~----~~~-----~-g~~~~~~~~~~~~~~dvi 62 (173)
.||+|+|+ |.+|+.++..|...+ .++.++|+++.. ++. +.+ . .+....+..+.+++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 58999999 999999999998754 489999996532 221 110 0 112234556788999999
Q ss_pred EEec
Q 044797 63 VVVI 66 (173)
Q Consensus 63 i~~v 66 (173)
|.+.
T Consensus 83 I~tA 86 (325)
T cd01336 83 ILVG 86 (325)
T ss_pred EEeC
Confidence 9885
No 325
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=97.41 E-value=0.00025 Score=46.26 Aligned_cols=72 Identities=11% Similarity=0.154 Sum_probs=51.3
Q ss_pred CeEEEEeCChhhHHHHHHH-HHCCCeE-EEEcCChHHHHHHHHcCCceecChhhhhcC--CCEEEEeccChhhhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASL-IRSGYKV-QAFEISDPLVDKFFMLGGIRSASPMDAGKD--VSALVVVISHVDQIDDIF 76 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l-~~~g~~V-~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~--~dvii~~v~~~~~~~~v~ 76 (173)
.++.++|+|+.|.+++..+ ...|+.+ .++|.++++..+-. .|+....+.+++.+. .|+.++++| +....++.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP-~~~a~~~~ 79 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVP-AEAAQEVA 79 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES--HHHHHHHH
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcC-HHHHHHHH
Confidence 4799999999999998644 4567664 68899988754211 155666577777665 999999999 44555555
No 326
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.0021 Score=52.17 Aligned_cols=108 Identities=14% Similarity=0.072 Sum_probs=66.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH------------------HHHHHHHc-CCceecChhhhhcCCCEEE
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP------------------LVDKFFML-GGIRSASPMDAGKDVSALV 63 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~------------------~~~~~~~~-g~~~~~~~~~~~~~~dvii 63 (173)
.||+|-|.|++|+..|+.|...|.+|++++-+.. +...+.+. +.+.....+-+..+||+.+
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cDIl~ 287 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCDILI 287 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccccCcEEc
Confidence 5899999999999999999999999877755443 22233332 4455544333445799888
Q ss_pred EeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797 64 VVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE 120 (173)
Q Consensus 64 ~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~ 120 (173)
-|.-.+....+-. +.++.. +|+... ..|.+ .+..+.+.++|+.|+.+
T Consensus 288 PcA~~n~I~~~na-------~~l~ak-~V~EgA-N~P~t-~eA~~i~~erGIl~~PD 334 (411)
T COG0334 288 PCALENVITEDNA-------DQLKAK-IVVEGA-NGPTT-PEADEILLERGILVVPD 334 (411)
T ss_pred ccccccccchhhH-------HHhhhc-EEEecc-CCCCC-HHHHHHHHHCCCEEcCh
Confidence 7765433222222 223322 444443 34544 34455566899988754
No 327
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=97.40 E-value=0.00072 Score=53.50 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=44.9
Q ss_pred eEEEEeC-ChhhHHHHHHHHHCCC--eEEEEcCChHHHHH--HHHc--CCcee--c---ChhhhhcCCCEEEEecc
Q 044797 4 KVGFVGL-DEYSVDMAASLIRSGY--KVQAFEISDPLVDK--FFML--GGIRS--A---SPMDAGKDVSALVVVIS 67 (173)
Q Consensus 4 ~IgiiG~-G~mG~~ia~~l~~~g~--~V~~~d~~~~~~~~--~~~~--g~~~~--~---~~~~~~~~~dvii~~v~ 67 (173)
||+|||+ |++|+.+|..|...+. ++.++|+++..-+. +.+. ..... . ++.+.++++|+||++..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG 76 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAG 76 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCC
Confidence 7999999 9999999999988775 79999998722111 1111 11222 1 23578999999999864
No 328
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.37 E-value=0.0029 Score=52.48 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=45.9
Q ss_pred eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH-H----HHHHHcCCceecC--hh-----hhhcCCCEEEEec
Q 044797 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL-V----DKFFMLGGIRSAS--PM-----DAGKDVSALVVVI 66 (173)
Q Consensus 4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~-~----~~~~~~g~~~~~~--~~-----~~~~~~dvii~~v 66 (173)
||.|||+|..|.+.|+.|.+.|++|.++|+++.. . +.+.+.|++.... .. +...+.|+|+.+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~ 76 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSP 76 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence 7999999999999999999999999999976432 2 2355556654221 11 2466789888753
No 329
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.37 E-value=0.00046 Score=55.14 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=52.4
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCCeEEE--EcCChHHHHH-HHHcC--Cceec-ChhhhhcCCCEEEEeccChhhhhhh
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGYKVQA--FEISDPLVDK-FFMLG--GIRSA-SPMDAGKDVSALVVVISHVDQIDDI 75 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~--~d~~~~~~~~-~~~~g--~~~~~-~~~~~~~~~dvii~~v~~~~~~~~v 75 (173)
+||+|+|+ |..|..+.+.|.+++|++.- +-.+.++..+ +.-.+ ..... +..+ ++++|++|+++|.. ...+.
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~-~s~~~ 82 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAA-VSRSF 82 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHH-HHHHH
Confidence 68999985 99999999999987764321 1122222211 11111 11211 2223 47899999999953 33333
Q ss_pred hcCccchhhcCCCCCEEEEcCCC
Q 044797 76 FFGHEGVLKGLQKGAVIILQSTI 98 (173)
Q Consensus 76 ~~~~~~i~~~l~~g~~ii~~st~ 98 (173)
. + .....|..+||.|+-
T Consensus 83 v---~---~~~~~G~~VIDlS~~ 99 (336)
T PRK05671 83 A---E---KARAAGCSVIDLSGA 99 (336)
T ss_pred H---H---HHHHCCCeEEECchh
Confidence 3 1 223568899999863
No 330
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=97.36 E-value=0.00074 Score=52.30 Aligned_cols=65 Identities=11% Similarity=-0.060 Sum_probs=45.2
Q ss_pred eEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcC----CceecChhhhh------cC-CCEEEEeccC
Q 044797 4 KVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLG----GIRSASPMDAG------KD-VSALVVVISH 68 (173)
Q Consensus 4 ~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g----~~~~~~~~~~~------~~-~dvii~~v~~ 68 (173)
+|.|.|+ |.+|+.+++.|.+.|++|.+..|++++........ ..-.+++.+++ ++ +|.++.+.+.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 4778876 99999999999999999999999987643210001 11122334445 45 8999988763
No 331
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=97.36 E-value=0.0021 Score=57.22 Aligned_cols=112 Identities=16% Similarity=0.119 Sum_probs=68.4
Q ss_pred eEEEEeCChhhHHH-HHHHHHCCCeEEEEcCCh-HHHHHHHHcCCceec-ChhhhhcCCCEEEEec--c-Chhhhhhhhc
Q 044797 4 KVGFVGLDEYSVDM-AASLIRSGYKVQAFEISD-PLVDKFFMLGGIRSA-SPMDAGKDVSALVVVI--S-HVDQIDDIFF 77 (173)
Q Consensus 4 ~IgiiG~G~mG~~i-a~~l~~~g~~V~~~d~~~-~~~~~~~~~g~~~~~-~~~~~~~~~dvii~~v--~-~~~~~~~v~~ 77 (173)
+|.|+|+|..|.+. |+.|.+.|++|+++|.++ +..+.+.+.|+.... ...+.+.++|+||..- | +.+.+.....
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~~ 85 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAKS 85 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHHH
Confidence 69999999999997 999999999999999764 334556666766532 2335567889888753 2 1122222211
Q ss_pred C------ccchhhcCCCC-CEEE-EcCCCCHHHHHHHHHHHhcCCc
Q 044797 78 G------HEGVLKGLQKG-AVII-LQSTILPSHMQKLEKTFTGNLT 115 (173)
Q Consensus 78 ~------~~~i~~~l~~g-~~ii-~~st~~~~~~~~l~~~l~~~g~ 115 (173)
. +.+++..+.++ .+|. .-|.++..++.-+...|+..|.
T Consensus 86 ~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 86 RGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred CCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 0 11232222233 4443 4455665566667777776554
No 332
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=97.34 E-value=0.003 Score=49.35 Aligned_cols=110 Identities=15% Similarity=0.058 Sum_probs=74.3
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHH-HHHHHHcCCceecChhhhhcC--CCEEEEeccChhhhhhhhcC
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPL-VDKFFMLGGIRSASPMDAGKD--VSALVVVISHVDQIDDIFFG 78 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~~~~~~~~~~--~dvii~~v~~~~~~~~v~~~ 78 (173)
.||.+.| .|..|+.+-+++...|++ .+|..+|.+ .+. -.|.+...+..|+-+. .|+.++++| +..+.+++
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~--v~G~~~y~sv~dlp~~~~~Dlavi~vp-a~~v~~~l-- 80 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFDSVKEAVEETGANASVIFVP-APFAADAI-- 80 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCcce--ecCeeccCCHHHHhhccCCCEEEEecC-HHHHHHHH--
Confidence 5788888 599999999999999988 666666652 111 1377778888888776 799999999 55666666
Q ss_pred ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797 79 HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE 120 (173)
Q Consensus 79 ~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~ 120 (173)
++..+.- -...++-++.......+++.+..+++|++++..
T Consensus 81 -~e~~~~G-vk~avIis~Gf~e~~~~~l~~~a~~~girilGP 120 (286)
T TIGR01019 81 -FEAIDAG-IELIVCITEGIPVHDMLKVKRYMEESGTRLIGP 120 (286)
T ss_pred -HHHHHCC-CCEEEEECCCCCHHHHHHHHHHHHHcCCEEECC
Confidence 2333221 123333333333333468888888899987643
No 333
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=97.34 E-value=0.0011 Score=52.73 Aligned_cols=89 Identities=17% Similarity=0.118 Sum_probs=68.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
+++-|.|.|..|..+|++++..|..|.+++.+|=+.-...-.|.++. ..++++..+|++|+++-+. +++. .+-
T Consensus 210 K~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnk----dVi~--~eh 282 (420)
T COG0499 210 KNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNK----DVIR--KEH 282 (420)
T ss_pred ceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCc----CccC--HHH
Confidence 45667799999999999999999999999999876544444576655 4788889999999998743 2331 134
Q ss_pred hhcCCCCCEEEEcCCC
Q 044797 83 LKGLQKGAVIILQSTI 98 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~ 98 (173)
...+++|.++.+++-.
T Consensus 283 ~~~MkDgaIl~N~GHF 298 (420)
T COG0499 283 FEKMKDGAILANAGHF 298 (420)
T ss_pred HHhccCCeEEeccccc
Confidence 4568899999888743
No 334
>PTZ00325 malate dehydrogenase; Provisional
Probab=97.33 E-value=0.00044 Score=54.92 Aligned_cols=66 Identities=11% Similarity=0.052 Sum_probs=45.2
Q ss_pred CCeEEEEeC-ChhhHHHHHHHHHCC--CeEEEEcCChHHHHH--HHHc--CCce--ecC---hhhhhcCCCEEEEecc
Q 044797 2 ASKVGFVGL-DEYSVDMAASLIRSG--YKVQAFEISDPLVDK--FFML--GGIR--SAS---PMDAGKDVSALVVVIS 67 (173)
Q Consensus 2 ~~~IgiiG~-G~mG~~ia~~l~~~g--~~V~~~d~~~~~~~~--~~~~--g~~~--~~~---~~~~~~~~dvii~~v~ 67 (173)
|.||+|||+ |++|+.++..|...+ .++..+|++....+. +.+. .... .++ ..+.++++|+|+++.-
T Consensus 8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 469999999 999999999998655 589999984322211 1111 1122 212 1578899999999874
No 335
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=97.32 E-value=0.0044 Score=46.64 Aligned_cols=110 Identities=11% Similarity=-0.010 Sum_probs=66.9
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh-HHHHHHHHcC-Cceec--ChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD-PLVDKFFMLG-GIRSA--SPMDAGKDVSALVVVISHVDQIDDIFFG 78 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~-~~~~~~~~~g-~~~~~--~~~~~~~~~dvii~~v~~~~~~~~v~~~ 78 (173)
++|.|||.|.++..=++.|++.|.+|+++.+.. +.+..+.+.+ ++... -..+.++++++||.|+.++..-+.+...
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~vN~~I~~~ 105 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEKLNNKIRKH 105 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHHHHHHHHHH
Confidence 479999999999999999999999999997653 2344444433 22211 1123467899999999865432222210
Q ss_pred cc--c--------------hhhc-CCCCCEEEEcCC--CCHHHHHHHHHHHhc
Q 044797 79 HE--G--------------VLKG-LQKGAVIILQST--ILPSHMQKLEKTFTG 112 (173)
Q Consensus 79 ~~--~--------------i~~~-l~~g~~ii~~st--~~~~~~~~l~~~l~~ 112 (173)
.. + +.|+ +..|.+.|.+|| .+|...+.+.+.+++
T Consensus 106 a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~ 158 (223)
T PRK05562 106 CDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKN 158 (223)
T ss_pred HHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHH
Confidence 00 0 1111 234566665554 567777766666643
No 336
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=97.32 E-value=0.0035 Score=48.36 Aligned_cols=101 Identities=12% Similarity=0.141 Sum_probs=71.1
Q ss_pred CCceecChhhhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCcee---eec-
Q 044797 45 GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFY---ILE- 120 (173)
Q Consensus 45 g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~---v~~- 120 (173)
|++++++..++++++|++|+-+|-......++ +++.+++++|++|.+++|++|...-++-+.+.+..+.. -..
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Ii---kkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPaa 202 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDII---KKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHPGC 202 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHH---HHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCCCC
Confidence 55678888899999999999999766556676 57889999999999999998877665555565443321 111
Q ss_pred ------eeeee--ecCHhhHHHHHHHHHhhCCceee
Q 044797 121 ------RMFLI--SSSIDCFTYLFLVKNEFFIDKKV 148 (173)
Q Consensus 121 ------~~~~~--~g~~~~~~~~~~~~~~~g~~~~~ 148 (173)
..+.. -.++++.+++..+.+..+...|+
T Consensus 203 VPgt~~q~Yi~egyAtEEqI~klveL~~sa~k~ay~ 238 (340)
T TIGR01723 203 VPEMKGQVYIAEGYASEEAVNKLYELGKKARGKAFK 238 (340)
T ss_pred CCCCCCceEeecccCCHHHHHHHHHHHHHhCCCeee
Confidence 12222 23456777788888888765553
No 337
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=97.32 E-value=0.0033 Score=48.46 Aligned_cols=101 Identities=14% Similarity=0.116 Sum_probs=71.3
Q ss_pred CCceecChhhhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCcee---eece
Q 044797 45 GGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFY---ILER 121 (173)
Q Consensus 45 g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~---v~~~ 121 (173)
|++++++..|+++++|++++-+|-......++ +++.+++++|++|.+++|++|...-+.-+.+.+..+.. -.+.
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Ii---kki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDII---EKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHH---HHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 56678888899999999999999766556676 57889999999999999999887666555565443322 1111
Q ss_pred ------eeeee---cCHhhHHHHHHHHHhhCCceee
Q 044797 122 ------MFLIS---SSIDCFTYLFLVKNEFFIDKKV 148 (173)
Q Consensus 122 ------~~~~~---g~~~~~~~~~~~~~~~g~~~~~ 148 (173)
-.+.+ .++++.+++..+.+..+...|+
T Consensus 205 VPgt~Gq~~i~egyAtEEqI~klveL~~sa~k~ay~ 240 (342)
T PRK00961 205 VPEMKGQVYIAEGYADEEAVEKLYEIGKKARGNAFK 240 (342)
T ss_pred CCCCCCceecccccCCHHHHHHHHHHHHHhCCCeee
Confidence 11111 3456677778888888876553
No 338
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=97.30 E-value=0.0008 Score=53.97 Aligned_cols=89 Identities=16% Similarity=0.076 Sum_probs=54.3
Q ss_pred CCeEEEEe-CChhhHHHHHHHHHCCCe---EE--EEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhh
Q 044797 2 ASKVGFVG-LDEYSVDMAASLIRSGYK---VQ--AFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDI 75 (173)
Q Consensus 2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~---V~--~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v 75 (173)
.+||+|+| .|..|..+.+.|.+++|+ +. ...|+..+.-..............+.++++|++|+|+|... ..+.
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~-s~~~ 85 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSI-SKKF 85 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHH-HHHH
Confidence 47999995 799999999999988873 32 22344333211111111222112244578999999999653 3344
Q ss_pred hcCccchhhcCCCCCEEEEcCC
Q 044797 76 FFGHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 76 ~~~~~~i~~~l~~g~~ii~~st 97 (173)
. . .....|..+||.|+
T Consensus 86 ~---~---~~~~~g~~VIDlS~ 101 (344)
T PLN02383 86 G---P---IAVDKGAVVVDNSS 101 (344)
T ss_pred H---H---HHHhCCCEEEECCc
Confidence 3 1 22356889999985
No 339
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=97.29 E-value=0.00099 Score=46.07 Aligned_cols=112 Identities=13% Similarity=0.070 Sum_probs=63.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHH--------HcCCceecChhhhhc--CCCEEEEeccChhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFF--------MLGGIRSASPMDAGK--DVSALVVVISHVDQ 71 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~--------~~g~~~~~~~~~~~~--~~dvii~~v~~~~~ 71 (173)
.||.++|+|.+|+.++++|...|. +++++|.+.=..+.+. +.|...+....+.+. +.++=+.+.+....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~~ 82 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKID 82 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHCS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecccc
Confidence 589999999999999999999997 7899987632211111 112211111222222 23444444443221
Q ss_pred hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeecee
Q 044797 72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILERM 122 (173)
Q Consensus 72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~~ 122 (173)
++.. ...+.+-+++++++. ++.....+.+.+.+++..++...+
T Consensus 83 -~~~~------~~~~~~~d~vi~~~d-~~~~~~~l~~~~~~~~~p~i~~~~ 125 (135)
T PF00899_consen 83 -EENI------EELLKDYDIVIDCVD-SLAARLLLNEICREYGIPFIDAGV 125 (135)
T ss_dssp -HHHH------HHHHHTSSEEEEESS-SHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred -cccc------cccccCCCEEEEecC-CHHHHHHHHHHHHHcCCCEEEEEe
Confidence 1111 112234467777754 355667788888888888876653
No 340
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=97.28 E-value=0.00043 Score=55.43 Aligned_cols=87 Identities=13% Similarity=0.150 Sum_probs=53.3
Q ss_pred eEEEEe-CChhhHHHHHHHHHCCCeE---EEEcCChHHHHHHHHcCC--ceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797 4 KVGFVG-LDEYSVDMAASLIRSGYKV---QAFEISDPLVDKFFMLGG--IRSASPMDAGKDVSALVVVISHVDQIDDIFF 77 (173)
Q Consensus 4 ~IgiiG-~G~mG~~ia~~l~~~g~~V---~~~d~~~~~~~~~~~~g~--~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~ 77 (173)
||+|+| .|..|..+.+.|.+++|++ ..+.++.+.-+.+...+. ...+...+.++++|++|+|+|... ..+..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~-s~~~a- 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSV-SKEFA- 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHH-HHHHH-
Confidence 689998 8999999999999988863 233333222122222221 121111234578999999999543 33333
Q ss_pred CccchhhcCCCCCEEEEcCC
Q 044797 78 GHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 78 ~~~~i~~~l~~g~~ii~~st 97 (173)
..++..|..|||.|+
T Consensus 79 -----~~~~~~G~~VID~ss 93 (339)
T TIGR01296 79 -----PKAAKCGAIVIDNTS 93 (339)
T ss_pred -----HHHHHCCCEEEECCH
Confidence 123456788998875
No 341
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=97.25 E-value=0.001 Score=52.98 Aligned_cols=64 Identities=16% Similarity=0.243 Sum_probs=44.1
Q ss_pred eEEEEeC-ChhhHHHHHHHHHCCC-------eEEEEcCChHH--HHH----HHH------cCCceecChhhhhcCCCEEE
Q 044797 4 KVGFVGL-DEYSVDMAASLIRSGY-------KVQAFEISDPL--VDK----FFM------LGGIRSASPMDAGKDVSALV 63 (173)
Q Consensus 4 ~IgiiG~-G~mG~~ia~~l~~~g~-------~V~~~d~~~~~--~~~----~~~------~g~~~~~~~~~~~~~~dvii 63 (173)
||+|||+ |++|+.++..|...+. ++.++|++++. ++. +.+ .++....+..+.++++|+||
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 6899999 9999999999987553 59999996543 211 110 01112224467789999999
Q ss_pred Eecc
Q 044797 64 VVIS 67 (173)
Q Consensus 64 ~~v~ 67 (173)
++.-
T Consensus 81 itAG 84 (324)
T TIGR01758 81 LVGA 84 (324)
T ss_pred EcCC
Confidence 8763
No 342
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=97.25 E-value=0.003 Score=48.17 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=66.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH--------cCCceecChhhhhc--CCCEEEEeccChhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM--------LGGIRSASPMDAGK--DVSALVVVISHVDQ 71 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~~dvii~~v~~~~~ 71 (173)
.||.|+|+|.+|+.+++.|...|. +++++|.+.-....+.. .|-..+....+.++ +.++-+.+.+..
T Consensus 25 ~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~-- 102 (240)
T TIGR02355 25 SRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAK-- 102 (240)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEecc--
Confidence 589999999999999999999995 78888876433322211 12111111112221 345555555421
Q ss_pred hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
+.. +.+.+.+..-++|++++- .+.....+.+...++++.++...
T Consensus 103 i~~-----~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~~~ip~v~~~ 146 (240)
T TIGR02355 103 LDD-----AELAALIAEHDIVVDCTD-NVEVRNQLNRQCFAAKVPLVSGA 146 (240)
T ss_pred CCH-----HHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEEE
Confidence 111 012233455678888764 45666677888888888887653
No 343
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=97.25 E-value=0.004 Score=46.08 Aligned_cols=113 Identities=13% Similarity=0.099 Sum_probs=65.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHH----------HcCCceecChhhhhc--CCCEEEEeccCh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFF----------MLGGIRSASPMDAGK--DVSALVVVISHV 69 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~----------~~g~~~~~~~~~~~~--~~dvii~~v~~~ 69 (173)
.||.|+|+|.+|+.++++|...|. +++++|.+.-....+. +.|...+....+.++ +.++-+.+....
T Consensus 20 s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~~ 99 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEED 99 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEecc
Confidence 689999999999999999999996 5889987632211111 112111111112221 355555554321
Q ss_pred hhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 70 DQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 70 ~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
. .... +...+.+.+-++|+++.. .+.....+.+...++++.++...
T Consensus 100 ~--~~~~---~~~~~~~~~~dvVi~~~d-~~~~~~~ln~~c~~~~ip~i~~~ 145 (198)
T cd01485 100 S--LSND---SNIEEYLQKFTLVIATEE-NYERTAKVNDVCRKHHIPFISCA 145 (198)
T ss_pred c--ccch---hhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEE
Confidence 1 0000 011122344567887743 46666778888888898887765
No 344
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.24 E-value=0.0026 Score=50.96 Aligned_cols=110 Identities=11% Similarity=0.015 Sum_probs=61.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc----------CCceecChhhhhc--CCCEEEEeccCh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML----------GGIRSASPMDAGK--DVSALVVVISHV 69 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~----------g~~~~~~~~~~~~--~~dvii~~v~~~ 69 (173)
.+|.|||+|.+|+.+++.|.+.|+ +++++|++.-....+..+ |...+....+.++ +.++-+.+....
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~ 104 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTD 104 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEecc
Confidence 689999999999999999999997 789999874211111100 0001111111111 345555554322
Q ss_pred hhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797 70 DQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE 120 (173)
Q Consensus 70 ~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~ 120 (173)
.. .+. +.+.+..-++|++++- .+.+...+.+.+.+.++.++..
T Consensus 105 ~~-~~~------~~~~~~~~DlVid~~D-~~~~r~~in~~~~~~~ip~i~~ 147 (338)
T PRK12475 105 VT-VEE------LEELVKEVDLIIDATD-NFDTRLLINDLSQKYNIPWIYG 147 (338)
T ss_pred CC-HHH------HHHHhcCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 11 111 1122344567777764 3445455666666777777654
No 345
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.24 E-value=0.00089 Score=53.49 Aligned_cols=89 Identities=16% Similarity=0.073 Sum_probs=54.8
Q ss_pred CCeEEEEe-CChhhHHHHHHHHHCCCeE---EEEcCChHHHHHHHHcC--CceecChhhhhcCCCEEEEeccChhhhhhh
Q 044797 2 ASKVGFVG-LDEYSVDMAASLIRSGYKV---QAFEISDPLVDKFFMLG--GIRSASPMDAGKDVSALVVVISHVDQIDDI 75 (173)
Q Consensus 2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V---~~~d~~~~~~~~~~~~g--~~~~~~~~~~~~~~dvii~~v~~~~~~~~v 75 (173)
++||+|+| .|..|..+.+.|.+++|++ ....++++.-+.+.-.+ ....+...+.++++|+||+|+|... .++.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g~-s~~~ 79 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGSV-SKKY 79 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChHH-HHHH
Confidence 46899995 7999999999999988753 55543332222221112 1222111233478999999998543 3444
Q ss_pred hcCccchhhcCCCCCEEEEcCC
Q 044797 76 FFGHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 76 ~~~~~~i~~~l~~g~~ii~~st 97 (173)
. ..++..|..|||.|+
T Consensus 80 ~------~~~~~~G~~VIDlS~ 95 (334)
T PRK14874 80 A------PKAAAAGAVVIDNSS 95 (334)
T ss_pred H------HHHHhCCCEEEECCc
Confidence 3 123456788998875
No 346
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=97.23 E-value=0.0018 Score=54.86 Aligned_cols=113 Identities=12% Similarity=0.004 Sum_probs=71.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCce--ecChhhh-hcCCCEEEEeccChhh--hhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGIR--SASPMDA-GKDVSALVVVISHVDQ--IDDIF 76 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~~--~~~~~~~-~~~~dvii~~v~~~~~--~~~v~ 76 (173)
+++.|+|+|.+|.+++..|.+.|.+|+++||+.++.+.+.+. +... ..+..+. ...+|+|+.++|..-. .....
T Consensus 380 k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~p 459 (529)
T PLN02520 380 KLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVDETP 459 (529)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCCCCCc
Confidence 467889999999999999999999999999999988877653 2111 1122222 2356888877763321 11110
Q ss_pred cCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 77 FGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 77 ~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
. -...+++..+++|..-... .+ .+.+..++.|...++.-
T Consensus 460 l----~~~~l~~~~~v~D~vY~P~-~T-~ll~~A~~~G~~~~~Gl 498 (529)
T PLN02520 460 I----SKHALKHYSLVFDAVYTPK-IT-RLLREAEESGAIIVSGT 498 (529)
T ss_pred c----cHhhCCCCCEEEEeccCCC-cC-HHHHHHHHCCCeEeCcH
Confidence 0 0134667888999876433 32 34555566777665543
No 347
>PRK08017 oxidoreductase; Provisional
Probab=97.22 E-value=0.0013 Score=49.89 Aligned_cols=46 Identities=28% Similarity=0.270 Sum_probs=39.8
Q ss_pred CCCeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCC
Q 044797 1 MASKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGG 46 (173)
Q Consensus 1 m~~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~ 46 (173)
|+++|.|.|+ |.+|.++++.|++.|++|.+.+|++++.+.+.+.++
T Consensus 1 m~k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~ 47 (256)
T PRK08017 1 MQKSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNSLGF 47 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHhCCC
Confidence 6678999987 999999999999999999999999988876665543
No 348
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.22 E-value=0.005 Score=50.93 Aligned_cols=113 Identities=11% Similarity=0.037 Sum_probs=65.9
Q ss_pred CeEEEEeCChhhHHHHHHHHHC--CCeEEEEcCChHH--HHHHHHcCCceecC--hhhhhcCCCEEEEec--cC-hhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRS--GYKVQAFEISDPL--VDKFFMLGGIRSAS--PMDAGKDVSALVVVI--SH-VDQID 73 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~--g~~V~~~d~~~~~--~~~~~~~g~~~~~~--~~~~~~~~dvii~~v--~~-~~~~~ 73 (173)
++|.|+|+|..|.+.++.|++. |++|+++|.++.. .+.+.+ |++.... ..+.+.++|+||.+. |. .+.+.
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p~~~ 86 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALATPEIQ 86 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCCHHHH
Confidence 5799999999999999999987 5889999976432 234433 6654211 234467899887753 31 22222
Q ss_pred hhhc------CccchhhcCCCCCEEEEc-CCCCHHHHHHHHHHHhcCCce
Q 044797 74 DIFF------GHEGVLKGLQKGAVIILQ-STILPSHMQKLEKTFTGNLTF 116 (173)
Q Consensus 74 ~v~~------~~~~i~~~l~~g~~ii~~-st~~~~~~~~l~~~l~~~g~~ 116 (173)
.... .+.++...+.+.++|--+ |.++..++.-+...|...|..
T Consensus 87 ~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~ 136 (438)
T PRK04663 87 QVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVK 136 (438)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCC
Confidence 2211 011232222234455444 445555556666777666554
No 349
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.22 E-value=0.0025 Score=47.70 Aligned_cols=32 Identities=28% Similarity=0.528 Sum_probs=29.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEIS 34 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~ 34 (173)
.+|.|+|+|.+|+.+++.|.+.|. +++++|.+
T Consensus 29 ~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 29 AKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 589999999999999999999997 58999887
No 350
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.18 E-value=0.0021 Score=51.00 Aligned_cols=113 Identities=19% Similarity=0.286 Sum_probs=66.7
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHC--------CCeE---EEEcCChHHHHHHHHcC-CceecCh-----hhhh--cCCCE
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRS--------GYKV---QAFEISDPLVDKFFMLG-GIRSASP-----MDAG--KDVSA 61 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~--------g~~V---~~~d~~~~~~~~~~~~g-~~~~~~~-----~~~~--~~~dv 61 (173)
|+.+|+++|+|.+|+.+++-|.++ |.++ .+.+|+..+...+.-.. ....++. .+.+ ++.|+
T Consensus 2 ~~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv 81 (333)
T COG0460 2 KTVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDIDV 81 (333)
T ss_pred ceEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCCE
Confidence 357999999999999999998764 3333 34566655443111111 1122222 3333 35678
Q ss_pred EEEeccC-hhhhhhhhcCccchhhcCCCCCEEEEcCCCC-HHHHHHHHHHHhcCCcee
Q 044797 62 LVVVISH-VDQIDDIFFGHEGVLKGLQKGAVIILQSTIL-PSHMQKLEKTFTGNLTFY 117 (173)
Q Consensus 62 ii~~v~~-~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~-~~~~~~l~~~l~~~g~~~ 117 (173)
++.+++. ....+. . +-+.++++.|++++...-.. .....++.+..+++|..+
T Consensus 82 vve~~~~d~~~~~~-~---~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l 135 (333)
T COG0460 82 VVELVGGDVEPAEP-A---DLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKL 135 (333)
T ss_pred EEecCcccCCchhh-H---HHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeE
Confidence 9988875 222232 2 23557788999998764321 112357777777777654
No 351
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.18 E-value=0.006 Score=51.04 Aligned_cols=108 Identities=11% Similarity=0.115 Sum_probs=70.2
Q ss_pred CeEEEEeC----------ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc----------------------CCceec
Q 044797 3 SKVGFVGL----------DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML----------------------GGIRSA 50 (173)
Q Consensus 3 ~~IgiiG~----------G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----------------------g~~~~~ 50 (173)
+||+|+|+ ..-...+++.|.+.|.+|.+||+.-+..+.-... ++..++
T Consensus 325 ~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (473)
T PLN02353 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVW 404 (473)
T ss_pred CEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeC
Confidence 58999997 4467789999999999999999864332111011 234556
Q ss_pred ChhhhhcCCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeee
Q 044797 51 SPMDAGKDVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYIL 119 (173)
Q Consensus 51 ~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~ 119 (173)
+..++++++|+|++++..+. ++..- .+.+.+.+.+..+|+|.-..... +.+++.|..|..
T Consensus 405 ~~~~a~~~aD~vvi~t~~~e-f~~l~--~~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~ 464 (473)
T PLN02353 405 DAYEATKGAHGICILTEWDE-FKTLD--YQKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYS 464 (473)
T ss_pred CHHHHhcCCCEEEECCCChH-hcccC--HHHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEE
Confidence 66789999999999998654 43321 12344445555689998765421 223345777654
No 352
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=97.17 E-value=0.0014 Score=52.54 Aligned_cols=88 Identities=10% Similarity=0.092 Sum_probs=52.5
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCC-CeEEEE-cCChHHHHHHHHc-------CC-------ceecChhhhhcCCCEEEEe
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSG-YKVQAF-EISDPLVDKFFML-------GG-------IRSASPMDAGKDVSALVVV 65 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g-~~V~~~-d~~~~~~~~~~~~-------g~-------~~~~~~~~~~~~~dvii~~ 65 (173)
+||+|+|+ |.||..+++.|..+. +++... +++++.-+.+.+. +. .......+..+++|+|+.|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 48999995 999999999998876 576544 5443221111110 00 1111122345789999999
Q ss_pred ccChhhhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797 66 ISHVDQIDDIFFGHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 66 v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st 97 (173)
+|.... .++. + .....|..++|.|.
T Consensus 81 ~p~~~s-~~~~---~---~~~~~G~~VIDlsg 105 (341)
T TIGR00978 81 LPSEVA-EEVE---P---KLAEAGKPVFSNAS 105 (341)
T ss_pred CCHHHH-HHHH---H---HHHHCCCEEEECCh
Confidence 996533 3332 1 22346777888764
No 353
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=97.16 E-value=0.0062 Score=50.28 Aligned_cols=112 Identities=16% Similarity=0.155 Sum_probs=66.4
Q ss_pred eEEEEeCChhhH-HHHHHHHHCCCeEEEEcCChH-HHHHHHHcCCceecChhhh-hcCCCEEEEec--c-Chhhhhhhhc
Q 044797 4 KVGFVGLDEYSV-DMAASLIRSGYKVQAFEISDP-LVDKFFMLGGIRSASPMDA-GKDVSALVVVI--S-HVDQIDDIFF 77 (173)
Q Consensus 4 ~IgiiG~G~mG~-~ia~~l~~~g~~V~~~d~~~~-~~~~~~~~g~~~~~~~~~~-~~~~dvii~~v--~-~~~~~~~v~~ 77 (173)
+|-|||.|-.|. ++|+-|++.|++|+..|.+.. ..+++.++|++.....++. +.+.|+||... + +++.+.....
T Consensus 9 ~iHfIGIgG~GMsglA~iL~~~G~~VsGSD~~~~~~t~~L~~~G~~i~~gh~~~ni~~~~~VV~s~Ai~~~NpEi~~A~e 88 (459)
T COG0773 9 KIHFIGIGGIGMSGLAEILLNLGYKVSGSDLAESPMTQRLEALGIEIFIGHDAENILDADVVVVSNAIKEDNPEIVAALE 88 (459)
T ss_pred eEEEEeeccccHHHHHHHHHhCCCceECccccccHHHHHHHHCCCeEeCCCCHHHcCCCceEEEecccCCCCHHHHHHHH
Confidence 599999999985 578889999999999997654 4567888888765443332 56677666543 3 2233333321
Q ss_pred -------CccchhhcCCCCCEE-EEcCCCCHHHHHHHHHHHhcCCc
Q 044797 78 -------GHEGVLKGLQKGAVI-ILQSTILPSHMQKLEKTFTGNLT 115 (173)
Q Consensus 78 -------~~~~i~~~l~~g~~i-i~~st~~~~~~~~l~~~l~~~g~ 115 (173)
+++-+.+.++....| |.-+-++..++.-+...+.+.|.
T Consensus 89 ~~ipi~~r~e~Laelm~~~~~iaVaGTHGKTTTTsmla~vl~~~gl 134 (459)
T COG0773 89 RGIPVISRAEMLAELMRFRTSIAVAGTHGKTTTTSMLAWVLEAAGL 134 (459)
T ss_pred cCCCeEcHHHHHHHHHhCCeeEEEeCCCCchhHHHHHHHHHHhCCC
Confidence 111123334443333 23333555555666666665543
No 354
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.15 E-value=0.0023 Score=47.04 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=59.2
Q ss_pred CeEEEEeCC-hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CC--cee--cC----hhhhhcCCCEEEEeccChhh-
Q 044797 3 SKVGFVGLD-EYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GG--IRS--AS----PMDAGKDVSALVVVISHVDQ- 71 (173)
Q Consensus 3 ~~IgiiG~G-~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~--~~~--~~----~~~~~~~~dvii~~v~~~~~- 71 (173)
+++.|||-+ .+|.+++..|.+.|..|+++|.+.-.. +... .. ..+ .+ ..+.+++||+||++++.+.-
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~ 140 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYK 140 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCc
Confidence 578899754 579999999999999999998654222 0000 00 011 12 56788999999999986543
Q ss_pred hhhhhcCccchhhcCCCCCEEEEcCCC
Q 044797 72 IDDIFFGHEGVLKGLQKGAVIILQSTI 98 (173)
Q Consensus 72 ~~~v~~~~~~i~~~l~~g~~ii~~st~ 98 (173)
+. .+.+++|+++||.+..
T Consensus 141 i~---------~d~ik~GavVIDVGi~ 158 (197)
T cd01079 141 VP---------TELLKDGAICINFASI 158 (197)
T ss_pred cC---------HHHcCCCcEEEEcCCC
Confidence 21 2457899999999865
No 355
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.15 E-value=0.0063 Score=47.88 Aligned_cols=74 Identities=18% Similarity=0.220 Sum_probs=58.9
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecChh-------hhhc-----CCCEEEEeccCh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSASPM-------DAGK-----DVSALVVVISHV 69 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~~-------~~~~-----~~dvii~~v~~~ 69 (173)
.+++|.|+|.+|.+.++..+.+|. +++..|.|+++.+...+.|++-.-++. |.+. +.|+-+.|+-..
T Consensus 194 stvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~G~~ 273 (375)
T KOG0022|consen 194 STVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECIGNV 273 (375)
T ss_pred CEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEEecCCH
Confidence 478999999999999999999995 799999999999999988876444443 2221 578888888876
Q ss_pred hhhhhhh
Q 044797 70 DQIDDIF 76 (173)
Q Consensus 70 ~~~~~v~ 76 (173)
+.+++.+
T Consensus 274 ~~m~~al 280 (375)
T KOG0022|consen 274 STMRAAL 280 (375)
T ss_pred HHHHHHH
Confidence 6666665
No 356
>PRK08328 hypothetical protein; Provisional
Probab=97.14 E-value=0.0069 Score=45.90 Aligned_cols=111 Identities=13% Similarity=0.031 Sum_probs=66.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc--------CCc-eecChhhhhc--CCCEEEEeccChh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML--------GGI-RSASPMDAGK--DVSALVVVISHVD 70 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~-~~~~~~~~~~--~~dvii~~v~~~~ 70 (173)
.+|.|+|+|..|+.+++.|...|. +++++|.+.-....+..+ |.. ......+.++ +.|+.+.+.+...
T Consensus 28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~~ 107 (231)
T PRK08328 28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGRL 107 (231)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEeccC
Confidence 589999999999999999999996 688998775433333221 110 0000011111 4677776654211
Q ss_pred hhhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 71 QIDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 71 ~~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
.++ .+.+.+++-++|+++.-. +.+-..+.+...++++.++...
T Consensus 108 -~~~------~~~~~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~ 150 (231)
T PRK08328 108 -SEE------NIDEVLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGA 150 (231)
T ss_pred -CHH------HHHHHHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEe
Confidence 111 122234556788887654 5555566667777888887654
No 357
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.11 E-value=0.0032 Score=49.40 Aligned_cols=73 Identities=14% Similarity=0.171 Sum_probs=56.9
Q ss_pred CeEEEEeCC-hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLD-EYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G-~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.|||-+ .+|.+++..|.+.|..|++++.. +.++.+.++++|+||.++.-+. .+
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~~----~i----- 224 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQAM----MI----- 224 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcC----cc-----
Confidence 578899755 57999999999999999998643 2357788899999999997543 22
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
-.+.+++|+++||.+..
T Consensus 225 ~~~~vk~gavVIDvGin 241 (299)
T PLN02516 225 KGDWIKPGAAVIDVGTN 241 (299)
T ss_pred CHHHcCCCCEEEEeecc
Confidence 12468899999999764
No 358
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.11 E-value=0.0036 Score=51.26 Aligned_cols=106 Identities=11% Similarity=-0.032 Sum_probs=61.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhh--cCCCEEEEe--ccCh-hhh---hh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAG--KDVSALVVV--ISHV-DQI---DD 74 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~--~~~dvii~~--v~~~-~~~---~~ 74 (173)
|+|.|+|+|.-|.++|+.|. .|++|+++|.++.... ..+.|+... . .+.. +++|+||.. +|.. +.+ ++
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~ 76 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN 76 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence 58999999999999999999 9999999996543221 223355543 2 2223 468987765 2322 212 12
Q ss_pred hhcCccchhhcCCCCCEE-EEcCCCCHHHHHHHHHHHhcCC
Q 044797 75 IFFGHEGVLKGLQKGAVI-ILQSTILPSHMQKLEKTFTGNL 114 (173)
Q Consensus 75 v~~~~~~i~~~l~~g~~i-i~~st~~~~~~~~l~~~l~~~g 114 (173)
++. +.++...+. ..+| |.-|.++..++.-+...|...+
T Consensus 77 i~~-~~e~~~~~~-~~~i~ITGT~GKTTTt~ml~~iL~~~g 115 (401)
T PRK03815 77 LIS-EYDYFYDVM-PFSIWISGTNGKTTTTQMTTHLLEDFG 115 (401)
T ss_pred Hhh-HHHHHHHhc-CCEEEEECCCcHHHHHHHHHHHHHHCC
Confidence 221 112222222 2344 4445555555666677777655
No 359
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=97.10 E-value=0.0042 Score=46.90 Aligned_cols=33 Identities=21% Similarity=0.185 Sum_probs=29.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCCh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISD 35 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~ 35 (173)
.+|.|+|+|.+|+.++++|...|. +++++|.+.
T Consensus 22 ~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 22 ARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 689999999999999999999996 788888753
No 360
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=97.07 E-value=0.0018 Score=51.70 Aligned_cols=64 Identities=8% Similarity=0.084 Sum_probs=44.9
Q ss_pred CCeEEEEeC-ChhhHHHHHHHHHC-CCeEEEEcCChHHHHHHHHc-CCce-----e---cChhhhhcCCCEEEEe
Q 044797 2 ASKVGFVGL-DEYSVDMAASLIRS-GYKVQAFEISDPLVDKFFML-GGIR-----S---ASPMDAGKDVSALVVV 65 (173)
Q Consensus 2 ~~~IgiiG~-G~mG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~-g~~~-----~---~~~~~~~~~~dvii~~ 65 (173)
||+|.|.|+ |.+|+.+++.|++. |++|++.+|++++...+... +++. . ....++++++|+||-+
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~ 75 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPL 75 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence 468999986 99999999999986 69999999987655443321 2221 1 1123456789999964
No 361
>PLN00016 RNA-binding protein; Provisional
Probab=97.07 E-value=0.0098 Score=48.13 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=33.1
Q ss_pred CCCeEEEE----e-CChhhHHHHHHHHHCCCeEEEEcCChHH
Q 044797 1 MASKVGFV----G-LDEYSVDMAASLIRSGYKVQAFEISDPL 37 (173)
Q Consensus 1 m~~~Igii----G-~G~mG~~ia~~l~~~g~~V~~~d~~~~~ 37 (173)
|+++|.|+ | .|.+|..+++.|++.|++|++.+|+++.
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcc
Confidence 46789999 5 5999999999999999999999998754
No 362
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.05 E-value=0.012 Score=48.83 Aligned_cols=114 Identities=17% Similarity=0.047 Sum_probs=67.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH--HHHHHH--cCCceec--ChhhhhcCCCEEEEec--c-Chhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL--VDKFFM--LGGIRSA--SPMDAGKDVSALVVVI--S-HVDQID 73 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~--~~~~~~--~g~~~~~--~~~~~~~~~dvii~~v--~-~~~~~~ 73 (173)
++|.|+|.|..|.+.|+.|.+.|++|+++|.++.. .+++.+ .|+.... ...+...++|+||.+. | +.+.+.
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p~~~ 85 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIE 85 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCHHHH
Confidence 58999999999999999999999999999976542 344443 2554322 1233346789988864 2 122222
Q ss_pred hhhcC------ccchh-hcCC--CCCEE-EEcCCCCHHHHHHHHHHHhcCCce
Q 044797 74 DIFFG------HEGVL-KGLQ--KGAVI-ILQSTILPSHMQKLEKTFTGNLTF 116 (173)
Q Consensus 74 ~v~~~------~~~i~-~~l~--~g~~i-i~~st~~~~~~~~l~~~l~~~g~~ 116 (173)
..... +.++. ...+ +..+| |.-|.++..++.-+...|+..|..
T Consensus 86 ~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~ 138 (445)
T PRK04308 86 AFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLD 138 (445)
T ss_pred HHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCC
Confidence 22110 11222 2222 23444 344555555566666777665554
No 363
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.04 E-value=0.004 Score=48.46 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=57.4
Q ss_pred CeEEEEeCC-hhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLD-EYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G-~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.|||-+ .+|.+++..|.+.+..|+++... +.++.+.+++||+||+++.-+.-+.
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~--------------T~~l~~~~~~ADIvI~AvG~~~~i~-------- 215 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSR--------------TKDLPQVAKEADILVVATGLAKFVK-------- 215 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccC--------
Confidence 578899755 57999999999999999988643 2356778899999999998554322
Q ss_pred hhhcCCCCCEEEEcCCCC
Q 044797 82 VLKGLQKGAVIILQSTIL 99 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~~ 99 (173)
.+.+++|+++||.+...
T Consensus 216 -~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 216 -KDYIKPGAIVIDVGMDR 232 (284)
T ss_pred -HHHcCCCCEEEEccCcc
Confidence 24578999999998653
No 364
>PRK08223 hypothetical protein; Validated
Probab=97.03 E-value=0.0057 Score=47.75 Aligned_cols=111 Identities=13% Similarity=-0.003 Sum_probs=63.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH--------cCCceecChhhhhc--CCCEEEEeccChhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM--------LGGIRSASPMDAGK--DVSALVVVISHVDQ 71 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~~dvii~~v~~~~~ 71 (173)
.+|.|||+|.+|+.++++|+..|. ++.++|.+.=....+.. .|-..+....+.+. +.++=|.+.+..-.
T Consensus 28 s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l~ 107 (287)
T PRK08223 28 SRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGIG 107 (287)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEecccC
Confidence 589999999999999999999996 78888876432222211 12111111222222 23333444332111
Q ss_pred hhhhhcCccchhhcCCCCCEEEEcCCCC-HHHHHHHHHHHhcCCceeeec
Q 044797 72 IDDIFFGHEGVLKGLQKGAVIILQSTIL-PSHMQKLEKTFTGNLTFYILE 120 (173)
Q Consensus 72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~-~~~~~~l~~~l~~~g~~~v~~ 120 (173)
+ +.+.+.+..-++|+|.+... ..+-..+.+....+++.++..
T Consensus 108 -~------~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~ 150 (287)
T PRK08223 108 -K------ENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTA 150 (287)
T ss_pred -c------cCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEE
Confidence 1 11122334457888876532 345566777777888888765
No 365
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=97.01 E-value=0.0031 Score=48.01 Aligned_cols=66 Identities=14% Similarity=0.081 Sum_probs=47.5
Q ss_pred CCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc--CCce-----ec---Chhhhh-cCCCEEEEecc
Q 044797 2 ASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML--GGIR-----SA---SPMDAG-KDVSALVVVIS 67 (173)
Q Consensus 2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--g~~~-----~~---~~~~~~-~~~dvii~~v~ 67 (173)
+++|.|+| .|.+|..+++.|++.|++|++..|++++....... ++.. .+ +..+.+ .++|+||.+.+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g 94 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATG 94 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCC
Confidence 36899998 59999999999999999999999998876544322 2221 11 122344 57899998765
No 366
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=97.01 E-value=0.0081 Score=47.69 Aligned_cols=87 Identities=14% Similarity=0.235 Sum_probs=60.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChh-hhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPM-DAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~-~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
.+|.|.|+|.+|...++.+...|..|++.++++++.+.+.+.|+...-+.. ...+..|+++.+...+..+..
T Consensus 167 ~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~~~~~------- 239 (329)
T TIGR02822 167 GRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGGLVPP------- 239 (329)
T ss_pred CEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHHHHHH-------
Confidence 368899999999999988889999999999999999888888875433221 112346887777664433332
Q ss_pred hhhcCCCCCEEEEcC
Q 044797 82 VLKGLQKGAVIILQS 96 (173)
Q Consensus 82 i~~~l~~g~~ii~~s 96 (173)
..+.++++..++..+
T Consensus 240 ~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 240 ALEALDRGGVLAVAG 254 (329)
T ss_pred HHHhhCCCcEEEEEe
Confidence 234566666666544
No 367
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=97.01 E-value=0.0095 Score=47.19 Aligned_cols=87 Identities=11% Similarity=0.025 Sum_probs=60.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHHHcCCcee-cC----hh---hhhc--CCCEEEEeccChhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFFMLGGIRS-AS----PM---DAGK--DVSALVVVISHVDQ 71 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~~-~~----~~---~~~~--~~dvii~~v~~~~~ 71 (173)
.+|.|+|.|.+|...++.+...|.+ |++.++++++.+.+.+.|+... +. .+ +... ..|+++-++..+..
T Consensus 165 ~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~ 244 (339)
T cd08239 165 DTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGNTAA 244 (339)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCCHHH
Confidence 4788999999999999999999988 9999999999888877775322 11 11 2222 58999999875443
Q ss_pred hhhhhcCccchhhcCCCCCEEEEcC
Q 044797 72 IDDIFFGHEGVLKGLQKGAVIILQS 96 (173)
Q Consensus 72 ~~~v~~~~~~i~~~l~~g~~ii~~s 96 (173)
....+ ..++++..++..+
T Consensus 245 ~~~~~-------~~l~~~G~~v~~g 262 (339)
T cd08239 245 RRLAL-------EAVRPWGRLVLVG 262 (339)
T ss_pred HHHHH-------HHhhcCCEEEEEc
Confidence 33333 3455555665544
No 368
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=97.01 E-value=0.0064 Score=47.80 Aligned_cols=85 Identities=19% Similarity=0.110 Sum_probs=57.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
.++.|+|+|.+|...++.+...|.+ |.++++++++++...+..+ .+..++.-...|++|-|+..+..++..+
T Consensus 146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~~--i~~~~~~~~g~Dvvid~~G~~~~~~~~~----- 218 (308)
T TIGR01202 146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYEV--LDPEKDPRRDYRAIYDASGDPSLIDTLV----- 218 (308)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhccc--cChhhccCCCCCEEEECCCCHHHHHHHH-----
Confidence 3688999999999999999889976 6678888888765544321 1111112235899999998654444443
Q ss_pred hhhcCCCCCEEEEcC
Q 044797 82 VLKGLQKGAVIILQS 96 (173)
Q Consensus 82 i~~~l~~g~~ii~~s 96 (173)
+.++++..++..+
T Consensus 219 --~~l~~~G~iv~~G 231 (308)
T TIGR01202 219 --RRLAKGGEIVLAG 231 (308)
T ss_pred --HhhhcCcEEEEEe
Confidence 4556666666554
No 369
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.00 E-value=0.0045 Score=48.30 Aligned_cols=73 Identities=21% Similarity=0.190 Sum_probs=56.6
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.|||- ..+|.+++..|.+.+..|+++.... .++.+..++||+||+++..+.-+.
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvGkp~~i~-------- 213 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVGRPHLIT-------- 213 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcCccC--------
Confidence 57888974 5689999999999999999886432 356778889999999998554221
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
..++++|+++||.+..
T Consensus 214 -~~~vk~GavVIDVGin 229 (287)
T PRK14173 214 -PEMVRPGAVVVDVGIN 229 (287)
T ss_pred -HHHcCCCCEEEEccCc
Confidence 2457899999999764
No 370
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.00 E-value=0.004 Score=48.43 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=56.3
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.|||- ..+|.+++..|.+.|..|+++.... .++.+..++||+||+++.-+.-+.
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~p~~i~-------- 214 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVGVPHFIG-------- 214 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccCCcCccC--------
Confidence 57888875 4679999999999999999886332 346777889999999998654322
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
.+.+++|+++||.+..
T Consensus 215 -~~~vk~GavVIDvGin 230 (282)
T PRK14169 215 -ADAVKPGAVVIDVGIS 230 (282)
T ss_pred -HHHcCCCcEEEEeecc
Confidence 2467899999999764
No 371
>PRK06813 homoserine dehydrogenase; Validated
Probab=97.00 E-value=0.0061 Score=48.92 Aligned_cols=116 Identities=11% Similarity=0.044 Sum_probs=64.0
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHC--------CCeE---EEEcCChHHHH-------HHHHcC--Cc-----eecChhhh
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRS--------GYKV---QAFEISDPLVD-------KFFMLG--GI-----RSASPMDA 55 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~--------g~~V---~~~d~~~~~~~-------~~~~~g--~~-----~~~~~~~~ 55 (173)
|+.+|+++|+|.+|+.+++-|.++ |.++ .+.+++..... .+.+.. .. ......+.
T Consensus 1 ~~i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~ 80 (346)
T PRK06813 1 MKIKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEER 80 (346)
T ss_pred CeeEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHH
Confidence 678999999999999999987543 4443 34465543322 111110 00 11122222
Q ss_pred h-c--CCCEEEEeccChhhhhhhhcCccchhhcCCCCCEEEEcCCCCH-HHHHHHHHHHhcCCceee
Q 044797 56 G-K--DVSALVVVISHVDQIDDIFFGHEGVLKGLQKGAVIILQSTILP-SHMQKLEKTFTGNLTFYI 118 (173)
Q Consensus 56 ~-~--~~dvii~~v~~~~~~~~v~~~~~~i~~~l~~g~~ii~~st~~~-~~~~~l~~~l~~~g~~~v 118 (173)
. . +.|+||-|+|++..-.+... .-+.++++.|+.+|..+-... ....++.+..+++|+.|.
T Consensus 81 ~~~~~~~dVvVe~T~s~~~~~e~a~--~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~ 145 (346)
T PRK06813 81 ATDNISGTVLVESTVTNLKDGNPGK--QYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIR 145 (346)
T ss_pred hcCCCCCCEEEECCCCccCCchHHH--HHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEE
Confidence 2 2 47999999874311001110 113466788999987753211 123667777777787764
No 372
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.99 E-value=0.0047 Score=47.96 Aligned_cols=73 Identities=22% Similarity=0.231 Sum_probs=56.8
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.|||- ..+|.+++..|.+.|..|++++.. +.++.+..++||+||+++.-+.-+.
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~-------- 216 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSK--------------TKNLKEVCKKADILVVAIGRPKFID-------- 216 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccC--------
Confidence 57889974 568999999999999999998743 2356778889999999998554321
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
.+.+++|+++||.+..
T Consensus 217 -~~~ik~gavVIDvGin 232 (278)
T PRK14172 217 -EEYVKEGAIVIDVGTS 232 (278)
T ss_pred -HHHcCCCcEEEEeecc
Confidence 2457899999998653
No 373
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.99 E-value=0.0037 Score=54.31 Aligned_cols=65 Identities=20% Similarity=0.212 Sum_probs=48.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH---------------------HHHHHHHcCCceec--------Chh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP---------------------LVDKFFMLGGIRSA--------SPM 53 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~---------------------~~~~~~~~g~~~~~--------~~~ 53 (173)
++|.|||.|..|...|..|.+.|++|+++++.+. ..+.+.+.|+.... +..
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~~~ 407 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISLE 407 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCCHH
Confidence 5899999999999999999999999999998643 22334455654321 233
Q ss_pred hhhcCCCEEEEecc
Q 044797 54 DAGKDVSALVVVIS 67 (173)
Q Consensus 54 ~~~~~~dvii~~v~ 67 (173)
+...+.|.||+++.
T Consensus 408 ~~~~~~DavilAtG 421 (654)
T PRK12769 408 SLLEDYDAVFVGVG 421 (654)
T ss_pred HHHhcCCEEEEeCC
Confidence 44567899999875
No 374
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.98 E-value=0.0042 Score=48.32 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=56.2
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.|||- ..+|.+++..|.+++..|+++.... .++.+..+.||+||+++.-+.-+.
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGkp~~i~-------- 216 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKPNFIT-------- 216 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCCcCcCC--------
Confidence 57888864 5689999999999999999887432 256667889999999998654322
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
...+++|+++||.+..
T Consensus 217 -~~~vk~gavVIDvGin 232 (282)
T PRK14180 217 -ADMVKEGAVVIDVGIN 232 (282)
T ss_pred -HHHcCCCcEEEEeccc
Confidence 2457899999999754
No 375
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=96.97 E-value=0.0039 Score=48.24 Aligned_cols=74 Identities=19% Similarity=0.174 Sum_probs=57.7
Q ss_pred CeEEEEeCCh-hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDE-YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~-mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.|||-++ +|.+|+..|.+.++.|+++.... .+..+..+++|+++.++.-+.-++
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~p~~i~-------- 214 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGKPHFIK-------- 214 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCCccccc--------
Confidence 5788998775 69999999999999999997542 356777889999999997544322
Q ss_pred hhhcCCCCCEEEEcCCCC
Q 044797 82 VLKGLQKGAVIILQSTIL 99 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~~ 99 (173)
.+.+++|.+++|.+...
T Consensus 215 -~d~vk~gavVIDVGinr 231 (283)
T COG0190 215 -ADMVKPGAVVIDVGINR 231 (283)
T ss_pred -cccccCCCEEEecCCcc
Confidence 24678999999987643
No 376
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.97 E-value=0.0012 Score=51.74 Aligned_cols=65 Identities=20% Similarity=0.046 Sum_probs=47.5
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-------ecChhhhhcCCCEEEEecc
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-------SASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-------~~~~~~~~~~~dvii~~v~ 67 (173)
|+|.|.| +|.+|..+++.|++.|++|++.+|++++...+...++.. ..+..++++++|+||.+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 4788996 599999999999999999999999877654333223221 1234456778999988763
No 377
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.97 E-value=0.0047 Score=48.40 Aligned_cols=74 Identities=16% Similarity=0.120 Sum_probs=56.9
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.|||- ..+|.+++..|.+.|..|+++... +.++.+..++||+||+++.-+.-+.
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~-------- 216 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSR--------------TQDLASITREADILVAAAGRPNLIG-------- 216 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccC--------
Confidence 57889975 467999999999999999988643 2356777889999999998554221
Q ss_pred hhhcCCCCCEEEEcCCCC
Q 044797 82 VLKGLQKGAVIILQSTIL 99 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~~ 99 (173)
...+++|+++||.+...
T Consensus 217 -~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 217 -AEMVKPGAVVVDVGIHR 233 (297)
T ss_pred -HHHcCCCCEEEEecccc
Confidence 24678999999998653
No 378
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.96 E-value=0.0049 Score=47.98 Aligned_cols=73 Identities=15% Similarity=0.099 Sum_probs=56.7
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.||| ...+|.+++..|.+.+..|++++.. +.++.+..++||+||+++.-+.-+.
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~--------------T~~l~~~~~~ADIvIsAvGk~~~i~-------- 217 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSK--------------TQNLPSIVRQADIIVGAVGKPEFIK-------- 217 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEeCCCcCccC--------
Confidence 5788886 4568999999999999999988743 2356677899999999998554321
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
...+++|+++||.+..
T Consensus 218 -~~~ik~gavVIDvGin 233 (284)
T PRK14177 218 -ADWISEGAVLLDAGYN 233 (284)
T ss_pred -HHHcCCCCEEEEecCc
Confidence 2467899999999864
No 379
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=96.95 E-value=0.0023 Score=46.73 Aligned_cols=64 Identities=11% Similarity=0.127 Sum_probs=44.3
Q ss_pred eEEEEeCChhhHHHH-HHHHHC-----CCeEEEEcCChHHHHHHHH--------cC----CceecChhhhhcCCCEEEEe
Q 044797 4 KVGFVGLDEYSVDMA-ASLIRS-----GYKVQAFEISDPLVDKFFM--------LG----GIRSASPMDAGKDVSALVVV 65 (173)
Q Consensus 4 ~IgiiG~G~mG~~ia-~~l~~~-----g~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~~dvii~~ 65 (173)
||+|||.|..-.+.- ..+... +.++..+|+++++++.... .+ +..+++.+++++++|+||.+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 799999999887743 233322 2489999999999875322 23 34578999999999999999
Q ss_pred cc
Q 044797 66 IS 67 (173)
Q Consensus 66 v~ 67 (173)
..
T Consensus 81 ir 82 (183)
T PF02056_consen 81 IR 82 (183)
T ss_dssp --
T ss_pred ee
Confidence 85
No 380
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.94 E-value=0.0051 Score=47.95 Aligned_cols=73 Identities=16% Similarity=0.164 Sum_probs=56.5
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.||| ...+|.+++..|.+.+..|++++.. +.++.+.+++||+||.++..+.- +.
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG~p~~----i~---- 216 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVGKPKL----IT---- 216 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecCCCCc----CC----
Confidence 5788886 5578999999999999999988643 23567788999999999975542 21
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
.+.+++|+++||.+..
T Consensus 217 -~~~ik~gavVIDvGi~ 232 (284)
T PRK14190 217 -ADMVKEGAVVIDVGVN 232 (284)
T ss_pred -HHHcCCCCEEEEeecc
Confidence 2457899999999754
No 381
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.94 E-value=0.0055 Score=47.71 Aligned_cols=73 Identities=14% Similarity=0.195 Sum_probs=56.5
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.|||- ..+|.+++..|.+.+..|+++.... .++.+..++||++|+++.-+.-+.
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGkp~~i~-------- 215 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNLLR-------- 215 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCccC--------
Confidence 57888875 4679999999999999999887542 346778889999999998554322
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
...+++|+++||.+..
T Consensus 216 -~~~vk~GavVIDvGin 231 (282)
T PRK14166 216 -SDMVKEGVIVVDVGIN 231 (282)
T ss_pred -HHHcCCCCEEEEeccc
Confidence 2457899999999754
No 382
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=96.94 E-value=0.0089 Score=45.70 Aligned_cols=110 Identities=11% Similarity=0.099 Sum_probs=62.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHH--------HcCCceecChhhhhc--CCCEEEEeccChhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFF--------MLGGIRSASPMDAGK--DVSALVVVISHVDQ 71 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~--------~~g~~~~~~~~~~~~--~~dvii~~v~~~~~ 71 (173)
.||.|+|+|.+|+.++++|...|. +++++|.+.=....+. +.|-..+....+.++ +.++-+.+.+..-.
T Consensus 33 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~ 112 (245)
T PRK05690 33 ARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARLD 112 (245)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 589999999999999999999996 7888887632221111 112111111112121 34444444432111
Q ss_pred hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797 72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE 120 (173)
Q Consensus 72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~ 120 (173)
+ +.+.+.++.-++|++++- .+.....+.+...++++.++..
T Consensus 113 -~------~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 113 -D------DELAALIAGHDLVLDCTD-NVATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred -H------HHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHhCCEEEEe
Confidence 1 111223445568888764 4555556777777778877754
No 383
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=96.93 E-value=0.01 Score=47.32 Aligned_cols=85 Identities=16% Similarity=0.107 Sum_probs=56.5
Q ss_pred CeEEEEeCChhhHHHHHHHHH-CC-CeEEEEcCChHHHHHHHHcCCceecChhhhhc--CCCEEEEeccC---hhhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIR-SG-YKVQAFEISDPLVDKFFMLGGIRSASPMDAGK--DVSALVVVISH---VDQIDDI 75 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~-~g-~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~--~~dvii~~v~~---~~~~~~v 75 (173)
.+|.|+|+|.+|...++.+++ .| .+|+++++++++.+.+.+.+.... ..+..+ ..|+||-++.. +..+.+.
T Consensus 165 ~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~~--~~~~~~~~g~d~viD~~G~~~~~~~~~~~ 242 (341)
T cd08237 165 NVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETYL--IDDIPEDLAVDHAFECVGGRGSQSAINQI 242 (341)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCceee--hhhhhhccCCcEEEECCCCCccHHHHHHH
Confidence 478899999999999888775 44 689999999999887765443321 112222 47999999873 2233333
Q ss_pred hcCccchhhcCCCCCEEEEcC
Q 044797 76 FFGHEGVLKGLQKGAVIILQS 96 (173)
Q Consensus 76 ~~~~~~i~~~l~~g~~ii~~s 96 (173)
...++++..++..+
T Consensus 243 -------~~~l~~~G~iv~~G 256 (341)
T cd08237 243 -------IDYIRPQGTIGLMG 256 (341)
T ss_pred -------HHhCcCCcEEEEEe
Confidence 34566666665443
No 384
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.92 E-value=0.0058 Score=47.63 Aligned_cols=73 Identities=11% Similarity=0.089 Sum_probs=56.4
Q ss_pred CeEEEEeC-ChhhHHHHHHHHH--CCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCc
Q 044797 3 SKVGFVGL-DEYSVDMAASLIR--SGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGH 79 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~--~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~ 79 (173)
+++.|||- ..+|.+++..|.+ .+..|+++... +.++.+..+.||+||+++.-+.- +
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp~~----i--- 217 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVAHL----V--- 217 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCcCc----c---
Confidence 57888864 5689999999988 68899988753 23577888999999999985542 2
Q ss_pred cchhhcCCCCCEEEEcCCC
Q 044797 80 EGVLKGLQKGAVIILQSTI 98 (173)
Q Consensus 80 ~~i~~~l~~g~~ii~~st~ 98 (173)
-.+++++|+++||.+..
T Consensus 218 --~~~~ik~GavVIDvGin 234 (284)
T PRK14193 218 --TADMVKPGAAVLDVGVS 234 (284)
T ss_pred --CHHHcCCCCEEEEcccc
Confidence 12468999999999764
No 385
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=96.91 E-value=0.0017 Score=51.88 Aligned_cols=87 Identities=11% Similarity=0.056 Sum_probs=52.5
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCC---eEEEEc--CChHHHHHHHHcCCceecChhhh-hcCCCEEEEeccChhhhhhh
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGY---KVQAFE--ISDPLVDKFFMLGGIRSASPMDA-GKDVSALVVVISHVDQIDDI 75 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~---~V~~~d--~~~~~~~~~~~~g~~~~~~~~~~-~~~~dvii~~v~~~~~~~~v 75 (173)
++|+|||+ |..|.-+.+.|.++.| ++.... ++..+.-.+........ +.++. ..++|++|+|+|.. ...++
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~-~s~~~ 82 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGRE-ASAAY 82 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHH-HHHHH
Confidence 68999986 9999999999998654 444332 22222111111112222 33333 36899999999954 33334
Q ss_pred hcCccchhhcCCCCCEEEEcCC
Q 044797 76 FFGHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 76 ~~~~~~i~~~l~~g~~ii~~st 97 (173)
. . .....|..+||.|+
T Consensus 83 ~---~---~~~~~g~~VIDlS~ 98 (336)
T PRK08040 83 A---E---EATNAGCLVIDSSG 98 (336)
T ss_pred H---H---HHHHCCCEEEECCh
Confidence 3 1 22356899999985
No 386
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=96.91 E-value=0.011 Score=47.63 Aligned_cols=87 Identities=14% Similarity=0.232 Sum_probs=60.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceec-----Chhhhh-----cCCCEEEEeccChhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSA-----SPMDAG-----KDVSALVVVISHVDQ 71 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~-----~~~~~~-----~~~dvii~~v~~~~~ 71 (173)
.+|.|.|.|.+|...++.+...|. +|++.++++++.+.+.+.|+...- +..+.+ ...|++|-++..+..
T Consensus 193 ~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~~~ 272 (371)
T cd08281 193 QSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSVPA 272 (371)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCChHH
Confidence 468899999999999999999998 699999999999888777764221 111111 147999999865444
Q ss_pred hhhhhcCccchhhcCCCCCEEEEcC
Q 044797 72 IDDIFFGHEGVLKGLQKGAVIILQS 96 (173)
Q Consensus 72 ~~~v~~~~~~i~~~l~~g~~ii~~s 96 (173)
+...+ ..++++..++..+
T Consensus 273 ~~~~~-------~~l~~~G~iv~~G 290 (371)
T cd08281 273 LETAY-------EITRRGGTTVTAG 290 (371)
T ss_pred HHHHH-------HHHhcCCEEEEEc
Confidence 44433 3455565665554
No 387
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=96.91 E-value=0.021 Score=42.25 Aligned_cols=110 Identities=12% Similarity=0.130 Sum_probs=64.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH--------cCCceecChhhhhc--CCCEEEEeccChhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM--------LGGIRSASPMDAGK--DVSALVVVISHVDQ 71 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~~dvii~~v~~~~~ 71 (173)
.||.|+|+|.+|+.++++|...|. +++++|.+.=....+.. .|-..+....+.++ +.++-+.+.+...
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~~- 100 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDDI- 100 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecCc-
Confidence 689999999999999999999996 68899876322221111 12111111112221 4555555443211
Q ss_pred hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
.+. ..+.+..-++++++.. .+.....+.+...++++.++...
T Consensus 101 -~~~------~~~~~~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~ 142 (197)
T cd01492 101 -SEK------PEEFFSQFDVVVATEL-SRAELVKINELCRKLGVKFYATG 142 (197)
T ss_pred -ccc------HHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEE
Confidence 111 0112233467777643 46666788888888888887654
No 388
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.90 E-value=0.022 Score=43.58 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=65.7
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHHHc----CCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFFML----GGIRSASPMDAGKDVSALVVVISHVDQIDDIFF 77 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~----g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~ 77 (173)
.+|.-+|||. |. ++..+.+.|.. |+++|.++..++...+. ++...-...+.-...|+|+.... .......+
T Consensus 121 ~~VLDiGcGs-G~-l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~-~~~~~~l~- 196 (250)
T PRK00517 121 KTVLDVGCGS-GI-LAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANIL-ANPLLELA- 196 (250)
T ss_pred CEEEEeCCcH-HH-HHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCc-HHHHHHHH-
Confidence 4788999998 63 44556667764 99999999888765442 33100000000014788876554 23344444
Q ss_pred CccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797 78 GHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI 118 (173)
Q Consensus 78 ~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v 118 (173)
+++...+++|..++-+.. .......+.+.+.+.|...+
T Consensus 197 --~~~~~~LkpgG~lilsgi-~~~~~~~v~~~l~~~Gf~~~ 234 (250)
T PRK00517 197 --PDLARLLKPGGRLILSGI-LEEQADEVLEAYEEAGFTLD 234 (250)
T ss_pred --HHHHHhcCCCcEEEEEEC-cHhhHHHHHHHHHHCCCEEE
Confidence 456677888877765433 33455677777777776544
No 389
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.90 E-value=0.0021 Score=52.00 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=43.3
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHH-HHHHHcCCc-eecC---hhhhhcCCCEEE
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLV-DKFFMLGGI-RSAS---PMDAGKDVSALV 63 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~-~~~~~~g~~-~~~~---~~~~~~~~dvii 63 (173)
|++|+|||.|..|..+++...+.|++|.++|.+++.. ..+.+.-+. ..++ ..++++.+|+|.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit 68 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVIT 68 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEE
Confidence 4689999999999999999999999999999876542 222221111 1122 345567788764
No 390
>PLN02427 UDP-apiose/xylose synthase
Probab=96.90 E-value=0.0027 Score=51.41 Aligned_cols=64 Identities=9% Similarity=0.029 Sum_probs=46.6
Q ss_pred CeEEEEe-CChhhHHHHHHHHHC-CCeEEEEcCChHHHHHHHHc-------CCce-------ecChhhhhcCCCEEEEec
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRS-GYKVQAFEISDPLVDKFFML-------GGIR-------SASPMDAGKDVSALVVVI 66 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~-g~~V~~~d~~~~~~~~~~~~-------g~~~-------~~~~~~~~~~~dvii~~v 66 (173)
|||.|.| +|.+|+.+++.|++. |++|.+.+|++++.+.+... +++. ..+..++++++|+||-+.
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHlA 94 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINLA 94 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEcc
Confidence 6899996 699999999999998 59999999987766554322 1111 112345677899999765
No 391
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.89 E-value=0.0051 Score=49.02 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=56.0
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.|||- ..+|.+++..|.+++..|+++.... .++.+..++||+||.++.-+.-+.
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvGkp~~v~-------- 272 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAGIPNLVR-------- 272 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccCCcCccC--------
Confidence 57888875 4579999999999999998886432 346777899999999998554322
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
.+.+++|+++||.+..
T Consensus 273 -~d~vk~GavVIDVGin 288 (345)
T PLN02897 273 -GSWLKPGAVVIDVGTT 288 (345)
T ss_pred -HHHcCCCCEEEEcccc
Confidence 2457899999999764
No 392
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.89 E-value=0.0044 Score=53.72 Aligned_cols=65 Identities=20% Similarity=0.242 Sum_probs=49.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH---------------------HHHHHHHcCCceec--------Chh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP---------------------LVDKFFMLGGIRSA--------SPM 53 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~---------------------~~~~~~~~g~~~~~--------~~~ 53 (173)
++|.|||.|..|...|..|.+.|++|++|++.+. ..+.+.+.|+.... +..
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~ 390 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFS 390 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCCHH
Confidence 6899999999999999999999999999998763 23444555654321 234
Q ss_pred hhhcCCCEEEEecc
Q 044797 54 DAGKDVSALVVVIS 67 (173)
Q Consensus 54 ~~~~~~dvii~~v~ 67 (173)
++..+.|.||+++-
T Consensus 391 ~l~~~~DaV~latG 404 (639)
T PRK12809 391 DLTSEYDAVFIGVG 404 (639)
T ss_pred HHHhcCCEEEEeCC
Confidence 55567899999885
No 393
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=96.89 E-value=0.0083 Score=47.90 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=26.2
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHCC-CeEEEEc
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRSG-YKVQAFE 32 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~g-~~V~~~d 32 (173)
|++||||.|+|+||..+.+.+.+.. .++.+.+
T Consensus 1 m~ikigInG~GRiGr~v~r~~~~~~~~~ivain 33 (334)
T PRK08955 1 MTIKVGINGFGRIGRLALRAAWDWPELEFVQIN 33 (334)
T ss_pred CCeEEEEECcCHHHHHHHHHHHhCCCcEEEEec
Confidence 6789999999999999999987654 5765554
No 394
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.88 E-value=0.0065 Score=47.57 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=56.5
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.|||- ..+|.+++..|.+.+..|++++... .++.+..++||+||+++.-+.-+.
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvGkp~~i~-------- 218 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVGIPNFVK-------- 218 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCccC--------
Confidence 57888864 5679999999999999999887532 356778899999999998654322
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
.+.+++|+++||.+..
T Consensus 219 -~~~ik~gaiVIDVGin 234 (294)
T PRK14187 219 -YSWIKKGAIVIDVGIN 234 (294)
T ss_pred -HHHcCCCCEEEEeccc
Confidence 2457899999999754
No 395
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.018 Score=43.39 Aligned_cols=146 Identities=8% Similarity=-0.059 Sum_probs=82.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEE-EEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQ-AFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~-~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+.++|||.|..|.+...+....++.+. +..|++++.+.+.+.-+-..-+.+...+-.+++|.-+|+. .+..+.
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~-~~s~va----- 84 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDA-LYSGVA----- 84 (289)
T ss_pred eEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHH-HHHHHH-----
Confidence 579999999999996666555555553 4467888877765532112222333344467888888854 344443
Q ss_pred hhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCcee-eeceeeeeecCHh------------------hHHHHHHHHHhh
Q 044797 82 VLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFY-ILERMFLISSSID------------------CFTYLFLVKNEF 142 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~-v~~~~~~~~g~~~------------------~~~~~~~~~~~~ 142 (173)
.....+||++++.+|...- ..+.+.+.+.|..- --.+.|+.+|.++ -+..++.+...+
T Consensus 85 a~~~~rpg~iv~HcSga~~---~~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~em 161 (289)
T COG5495 85 ATSLNRPGTIVAHCSGANG---SGILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLALEM 161 (289)
T ss_pred HhcccCCCeEEEEccCCCc---hhhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHHHHh
Confidence 1233578999999876432 23344444444321 1122333333332 344567777777
Q ss_pred CCceeecCCCchHhH
Q 044797 143 FIDKKVNISGQEIHW 157 (173)
Q Consensus 143 g~~~~~g~~Gsg~a~ 157 (173)
|...++-..+.-..|
T Consensus 162 gg~~f~V~~~~r~lY 176 (289)
T COG5495 162 GGEPFCVREEARILY 176 (289)
T ss_pred CCCceeechhHHHHH
Confidence 765555555544443
No 396
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.85 E-value=0.014 Score=46.68 Aligned_cols=45 Identities=18% Similarity=0.115 Sum_probs=39.9
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGI 47 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~ 47 (173)
.+|.|.|+|.+|...++.+...|.+|++.++++++.+.+.+.|+.
T Consensus 168 ~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~ 212 (349)
T TIGR03201 168 DLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGAD 212 (349)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCc
Confidence 468899999999999999999999999999999999888777753
No 397
>PRK05993 short chain dehydrogenase; Provisional
Probab=96.84 E-value=0.0047 Score=47.67 Aligned_cols=45 Identities=18% Similarity=0.093 Sum_probs=38.1
Q ss_pred CCeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCC
Q 044797 2 ASKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGG 46 (173)
Q Consensus 2 ~~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~ 46 (173)
++++.|.|+ |.+|.++++.|.+.|++|++.+|++++.+.+.+.++
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~~ 49 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEGL 49 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCc
Confidence 356777776 999999999999999999999999998887766543
No 398
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.83 E-value=0.0065 Score=47.43 Aligned_cols=73 Identities=11% Similarity=0.118 Sum_probs=56.3
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.|||- ..+|.+++..|.+.+..|++++.. +.++.+..+++|+||+++.-+.-+.
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~--------------T~~L~~~~~~ADIvV~AvGkp~~i~-------- 217 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSK--------------THNLSSITSKADIVVAAIGSPLKLT-------- 217 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCCCccC--------
Confidence 57888975 457999999999999999988743 2356778889999999998554222
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
...+++|+++||.+..
T Consensus 218 -~~~vk~GavVIDvGin 233 (288)
T PRK14171 218 -AEYFNPESIVIDVGIN 233 (288)
T ss_pred -HHHcCCCCEEEEeecc
Confidence 2457899999998754
No 399
>PRK07024 short chain dehydrogenase; Provisional
Probab=96.83 E-value=0.013 Score=44.58 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=36.8
Q ss_pred CCCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797 1 MASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM 43 (173)
Q Consensus 1 m~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~ 43 (173)
|++++-|.| .|.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 1 ~~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07024 1 MPLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAA 44 (257)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 667887775 8999999999999999999999999888766543
No 400
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.83 E-value=0.022 Score=47.02 Aligned_cols=113 Identities=10% Similarity=-0.024 Sum_probs=63.7
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH--HHHHHHcCCceec--ChhhhhcCCCEEEEec--c-Chhhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL--VDKFFMLGGIRSA--SPMDAGKDVSALVVVI--S-HVDQIDDI 75 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~--~~~~~~~g~~~~~--~~~~~~~~~dvii~~v--~-~~~~~~~v 75 (173)
++|.|+|.|..|.+.++.|++.|++|+++|..+.. .+.+. .|+.... ...+.+++.|++|..- | +.+.+...
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~-~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a 85 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLP-ENVERHTGSLNDEWLLAADLIVASPGIALAHPSLSAA 85 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHh-cCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHHHHH
Confidence 47999999999999999999999999999975432 23343 3654422 2334466788666543 2 11112211
Q ss_pred hcC------ccchhhcCCCCCEE-EEcCCCCHHHHHHHHHHHhcCCce
Q 044797 76 FFG------HEGVLKGLQKGAVI-ILQSTILPSHMQKLEKTFTGNLTF 116 (173)
Q Consensus 76 ~~~------~~~i~~~l~~g~~i-i~~st~~~~~~~~l~~~l~~~g~~ 116 (173)
... +.++...+.+..+| |.-|.++..++.-+...|+..|..
T Consensus 86 ~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~ 133 (438)
T PRK03806 86 ADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWK 133 (438)
T ss_pred HHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCCC
Confidence 100 01222222233344 333445555566666677665543
No 401
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.83 E-value=0.008 Score=50.19 Aligned_cols=66 Identities=21% Similarity=0.220 Sum_probs=49.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH---------------------HHHHHHHcCCceec--------Chh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP---------------------LVDKFFMLGGIRSA--------SPM 53 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~---------------------~~~~~~~~g~~~~~--------~~~ 53 (173)
.+|.|||.|..|...|..|.+.|++|+++++.+. ..+.+.+.|+.... ...
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~ 221 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDISLD 221 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccCHH
Confidence 5899999999999999999999999999997642 23445556654321 223
Q ss_pred hhhcCCCEEEEeccC
Q 044797 54 DAGKDVSALVVVISH 68 (173)
Q Consensus 54 ~~~~~~dvii~~v~~ 68 (173)
+.....|.||+++..
T Consensus 222 ~~~~~~D~vilAtGa 236 (467)
T TIGR01318 222 DLLEDYDAVFLGVGT 236 (467)
T ss_pred HHHhcCCEEEEEeCC
Confidence 444578999999853
No 402
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.82 E-value=0.0074 Score=46.97 Aligned_cols=73 Identities=19% Similarity=0.140 Sum_probs=55.7
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.|||- ..+|.+++..|.+.+..|+++... +.++.+..++||++|+++.-+.-+.
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~AtVtichs~--------------T~nl~~~~~~ADIvI~AvGk~~~i~-------- 215 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLERHATVTIAHSR--------------TADLAGEVGRADILVAAIGKAELVK-------- 215 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEecCCcCccC--------
Confidence 57888864 567999999999999999988643 2346677889999999998543221
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
.+.+++|+++||.+..
T Consensus 216 -~~~ik~gaiVIDvGin 231 (282)
T PRK14182 216 -GAWVKEGAVVIDVGMN 231 (282)
T ss_pred -HHHcCCCCEEEEeece
Confidence 2457899999999754
No 403
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.81 E-value=0.019 Score=47.90 Aligned_cols=113 Identities=13% Similarity=0.095 Sum_probs=62.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-CCc-eecChhhhhcCCCEEEEec--cC-hhhhhhhhc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-GGI-RSASPMDAGKDVSALVVVI--SH-VDQIDDIFF 77 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-g~~-~~~~~~~~~~~~dvii~~v--~~-~~~~~~v~~ 77 (173)
++|+|+|+|.-|.+.++.|.+ |.+|+++|.+++....+.+. ... ......+.+.++|+||..- |. .+.+.....
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a~~ 85 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIAKN 85 (454)
T ss_pred CEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHHHH
Confidence 589999999999999999994 99999999664433222221 111 1111234566789887753 21 122222110
Q ss_pred ------Cccchh-hcCCCCCEEEEc-CCCCHHHHHHHHHHHhcCCce
Q 044797 78 ------GHEGVL-KGLQKGAVIILQ-STILPSHMQKLEKTFTGNLTF 116 (173)
Q Consensus 78 ------~~~~i~-~~l~~g~~ii~~-st~~~~~~~~l~~~l~~~g~~ 116 (173)
.+-++. ...++..+|--+ |.++..++.-+...|+..|..
T Consensus 86 ~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~ 132 (454)
T PRK01368 86 FNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLD 132 (454)
T ss_pred CCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCC
Confidence 011222 222222455333 445555566667777665543
No 404
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=96.81 E-value=0.009 Score=46.86 Aligned_cols=89 Identities=20% Similarity=0.154 Sum_probs=66.4
Q ss_pred eEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 4 KVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 4 ~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
|+++| |.|.+|..-|+.|...|..|++...+|=.+-...-.|.+++ +.+|++++.|+++.++-.. +++. .+-
T Consensus 215 Kv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~-tm~ea~~e~difVTtTGc~----dii~--~~H 287 (434)
T KOG1370|consen 215 KVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVT-TLEEAIREVDIFVTTTGCK----DIIT--GEH 287 (434)
T ss_pred cEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEee-eHHHhhhcCCEEEEccCCc----chhh--HHH
Confidence 56665 99999999999999999999999988754433333476765 5899999999999988632 2232 234
Q ss_pred hhcCCCCCEEEEcCCCC
Q 044797 83 LKGLQKGAVIILQSTIL 99 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~ 99 (173)
...++++.++.+++-..
T Consensus 288 ~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 288 FDQMKNDAIVCNIGHFD 304 (434)
T ss_pred HHhCcCCcEEecccccc
Confidence 56688888888886543
No 405
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=96.80 E-value=0.0047 Score=48.92 Aligned_cols=65 Identities=17% Similarity=0.062 Sum_probs=49.6
Q ss_pred CCeEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHHHHH---HHHc-C-----------CceecChhhhhcCCCEEEEe
Q 044797 2 ASKVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPLVDK---FFML-G-----------GIRSASPMDAGKDVSALVVV 65 (173)
Q Consensus 2 ~~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~---~~~~-g-----------~~~~~~~~~~~~~~dvii~~ 65 (173)
+++|.|- +.|.+|+.+.+.|+++||.|.+.-|+++..+. +.+. + +....+..+++++||.||-+
T Consensus 6 ~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~ 85 (327)
T KOG1502|consen 6 GKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHT 85 (327)
T ss_pred CcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEEe
Confidence 3688888 57999999999999999999999888876322 3332 1 12345677899999999976
Q ss_pred c
Q 044797 66 I 66 (173)
Q Consensus 66 v 66 (173)
.
T Consensus 86 A 86 (327)
T KOG1502|consen 86 A 86 (327)
T ss_pred C
Confidence 5
No 406
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=96.80 E-value=0.0026 Score=44.80 Aligned_cols=104 Identities=15% Similarity=0.248 Sum_probs=63.7
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccch
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEGV 82 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~i 82 (173)
.||++||. + .++++.|.+.+.++.++|++++....- .+........+++.+||++++.-. ..+...+ +.+
T Consensus 12 ~~V~~VG~--f-~P~~~~l~~~~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~l~~aD~viiTGs--TlvN~Ti---~~i 81 (147)
T PF04016_consen 12 DKVGMVGY--F-QPLVEKLKERGAEVRVFDLNPDNIGEE--PGDVPDEDAEEILPWADVVIITGS--TLVNGTI---DDI 81 (147)
T ss_dssp SEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SS--CT-EEGGGHHHHGGG-SEEEEECH--HCCTTTH---HHH
T ss_pred CEEEEEcC--c-HHHHHHHhcCCCCEEEEECCCCCCCCC--CCcCCHHHHHHHHccCCEEEEEee--eeecCCH---HHH
Confidence 58999995 1 137788888889999999999775321 122244566788999999998753 2233333 345
Q ss_pred hhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797 83 LKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILE 120 (173)
Q Consensus 83 ~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~ 120 (173)
+...++++.++-.+++.|- .-+.+...|+.++..
T Consensus 82 L~~~~~~~~vil~GpS~~~----~P~~l~~~Gv~~v~g 115 (147)
T PF04016_consen 82 LELARNAREVILYGPSAPL----HPEALFDYGVTYVGG 115 (147)
T ss_dssp HHHTTTSSEEEEESCCGGS-----GGGGCCTT-SEEEE
T ss_pred HHhCccCCeEEEEecCchh----hHHHHHhCCCCEEEE
Confidence 5666667777766554432 234566678776544
No 407
>PRK09291 short chain dehydrogenase; Provisional
Probab=96.80 E-value=0.0057 Score=46.30 Aligned_cols=42 Identities=24% Similarity=0.238 Sum_probs=35.6
Q ss_pred CCCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797 1 MASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF 42 (173)
Q Consensus 1 m~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~ 42 (173)
|+++|.|.| .|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 1 m~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 43 (257)
T PRK09291 1 MSKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALR 43 (257)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 667888886 589999999999999999999999987765543
No 408
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.80 E-value=0.039 Score=43.22 Aligned_cols=108 Identities=13% Similarity=0.168 Sum_probs=68.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhh---hhhhhcC-
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQ---IDDIFFG- 78 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~---~~~v~~~- 78 (173)
++++|||.-.==..+++.|.+.|++|.++.-.... ..+. |+...++.++.++++|+||+++|...+ ++.++..
T Consensus 2 ~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~-~~~~--~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~ 78 (287)
T TIGR02853 2 IHIAVIGGDARQLELIRKLEELDAKISLIGFDQLE-DGFT--GAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNE 78 (287)
T ss_pred cEEEEEcccHHHHHHHHHHHHCCCEEEEEeccccc-cccc--cceeecchhhhhccCCEEEECCccccCCceEecccccC
Confidence 58999999999999999999999999888644210 1111 566677777789999999999993222 2222211
Q ss_pred ----ccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceee
Q 044797 79 ----HEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYI 118 (173)
Q Consensus 79 ----~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v 118 (173)
.+++.+.++++.++. ++...+ .+.+.++++|+.+.
T Consensus 79 ~~~l~~~~l~~~~~~~~~~-~G~~~~----~l~~~a~~~gi~v~ 117 (287)
T TIGR02853 79 KVVLTPELLESTKGHCTIY-VGISNP----YLEQLAADAGVKLI 117 (287)
T ss_pred CccccHHHHHhcCCCCEEE-EecCCH----HHHHHHHHCCCeEE
Confidence 123556666655433 332222 33346666787765
No 409
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=96.79 E-value=0.023 Score=42.92 Aligned_cols=88 Identities=16% Similarity=0.170 Sum_probs=58.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-c----Chhhh-----hcCCCEEEEeccChhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-A----SPMDA-----GKDVSALVVVISHVDQI 72 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~----~~~~~-----~~~~dvii~~v~~~~~~ 72 (173)
.+|.|.|.|.+|..+++.+...|.+|++.++++++.+.+.+.|.... + +..+. -...|+++.++..+...
T Consensus 136 ~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~ 215 (271)
T cd05188 136 DTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPETL 215 (271)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHHHH
Confidence 47889999999999999999999999999999888877766553211 1 11111 23578888887642333
Q ss_pred hhhhcCccchhhcCCCCCEEEEcCC
Q 044797 73 DDIFFGHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 73 ~~v~~~~~~i~~~l~~g~~ii~~st 97 (173)
... .+.++++..++..+.
T Consensus 216 ~~~-------~~~l~~~G~~v~~~~ 233 (271)
T cd05188 216 AQA-------LRLLRPGGRIVVVGG 233 (271)
T ss_pred HHH-------HHhcccCCEEEEEcc
Confidence 322 244556666665543
No 410
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.79 E-value=0.015 Score=43.44 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=33.6
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHH
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKF 41 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 41 (173)
++|.|.| .|.+|..+++.|.++|++|.+.+|++++.+.+
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 4688886 59999999999999999999999998776543
No 411
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=96.79 E-value=0.0031 Score=50.57 Aligned_cols=87 Identities=14% Similarity=0.103 Sum_probs=53.0
Q ss_pred CeEEEEeC-ChhhHHHHHHHHH-CCCe---EEEE--cCChHHHHHHHHcCCceec-ChhhhhcCCCEEEEeccChhhhhh
Q 044797 3 SKVGFVGL-DEYSVDMAASLIR-SGYK---VQAF--EISDPLVDKFFMLGGIRSA-SPMDAGKDVSALVVVISHVDQIDD 74 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~-~g~~---V~~~--d~~~~~~~~~~~~g~~~~~-~~~~~~~~~dvii~~v~~~~~~~~ 74 (173)
+||+|||. |..|.-+.+.|.+ ..++ +..+ .++..+.-.+......... +.. .+.++|++|+|+|.. ...+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~-~~~~~Divf~a~~~~-~s~~ 83 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKIN-SFEGVDIAFFSAGGE-VSRQ 83 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHH-HhcCCCEEEECCChH-HHHH
Confidence 58999986 9999999999985 5566 4333 2332221112111122221 333 347899999999854 3344
Q ss_pred hhcCccchhhcCCCCCEEEEcCC
Q 044797 75 IFFGHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 75 v~~~~~~i~~~l~~g~~ii~~st 97 (173)
+. . .....|..+||.|+
T Consensus 84 ~~---~---~~~~~G~~VID~Ss 100 (347)
T PRK06728 84 FV---N---QAVSSGAIVIDNTS 100 (347)
T ss_pred HH---H---HHHHCCCEEEECch
Confidence 43 1 23457889999875
No 412
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.78 E-value=0.0099 Score=47.93 Aligned_cols=111 Identities=14% Similarity=0.047 Sum_probs=63.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHH--------HcCCceecChhhhhc--CCCEEEEeccChhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFF--------MLGGIRSASPMDAGK--DVSALVVVISHVDQ 71 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~--------~~g~~~~~~~~~~~~--~~dvii~~v~~~~~ 71 (173)
.+|.|+|+|.+|+.++++|...|. +++++|.+.=....+. +.|-..+....+.++ +.++-+.+.+..-.
T Consensus 29 ~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~i~ 108 (355)
T PRK05597 29 AKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRRLT 108 (355)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEeecC
Confidence 689999999999999999999996 6888887642211111 112111111112121 35555555442111
Q ss_pred hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
.+. ..+.++.-++|++++-. +.+-..+.+...++++.++...
T Consensus 109 ~~~-------~~~~~~~~DvVvd~~d~-~~~r~~~n~~c~~~~ip~v~~~ 150 (355)
T PRK05597 109 WSN-------ALDELRDADVILDGSDN-FDTRHLASWAAARLGIPHVWAS 150 (355)
T ss_pred HHH-------HHHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEE
Confidence 111 11223455788888653 4444456667777888877654
No 413
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=96.77 E-value=0.0053 Score=52.28 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=45.9
Q ss_pred eEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH---------cC------Cce----ec---ChhhhhcCCC
Q 044797 4 KVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM---------LG------GIR----SA---SPMDAGKDVS 60 (173)
Q Consensus 4 ~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~---------~g------~~~----~~---~~~~~~~~~d 60 (173)
+|.|.| .|.+|..+++.|++.|++|++++|+.++.+.+.+ .| +.. .. +..+++.++|
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggiD 161 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNAS 161 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhcCCC
Confidence 466665 5999999999999999999999999888765432 01 111 11 2334567899
Q ss_pred EEEEecc
Q 044797 61 ALVVVIS 67 (173)
Q Consensus 61 vii~~v~ 67 (173)
+||.+..
T Consensus 162 iVVn~AG 168 (576)
T PLN03209 162 VVICCIG 168 (576)
T ss_pred EEEEccc
Confidence 9998864
No 414
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.77 E-value=0.044 Score=44.52 Aligned_cols=111 Identities=13% Similarity=0.009 Sum_probs=61.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH--------cCCceecChhhhhc--CCCEEEEeccChhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM--------LGGIRSASPMDAGK--DVSALVVVISHVDQ 71 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~~dvii~~v~~~~~ 71 (173)
.+|.|+|+|..|+.+++.|...|. +++++|++.-....+.. .|-..+....+.++ +.++-+...+....
T Consensus 136 ~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~~~ 215 (376)
T PRK08762 136 ARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQERVT 215 (376)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEeccCC
Confidence 689999999999999999999997 78999987321111111 11111111112221 23333333321110
Q ss_pred hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
.+. +.+.++.-++|++++.. +..-..+.+.+.++++.++...
T Consensus 216 -~~~------~~~~~~~~D~Vv~~~d~-~~~r~~ln~~~~~~~ip~i~~~ 257 (376)
T PRK08762 216 -SDN------VEALLQDVDVVVDGADN-FPTRYLLNDACVKLGKPLVYGA 257 (376)
T ss_pred -hHH------HHHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEE
Confidence 111 11223445688887653 4444567777777888877654
No 415
>PRK10537 voltage-gated potassium channel; Provisional
Probab=96.76 E-value=0.027 Score=46.04 Aligned_cols=106 Identities=8% Similarity=0.008 Sum_probs=63.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce---ecChhhh-----hcCCCEEEEeccChhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR---SASPMDA-----GKDVSALVVVISHVDQIDD 74 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~---~~~~~~~-----~~~~dvii~~v~~~~~~~~ 74 (173)
.++-|+|.|.+|..+++.|.+.|.++.+.|.+.. +...+.+... ..+..+. +++|+.++.+.+++..-..
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~~--~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ 318 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQRGQAVTVIVPLGL--EHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAF 318 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHCCCCEEEEECchh--hhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHH
Confidence 3588999999999999999999999999987632 3333333221 1111222 4578999998886554333
Q ss_pred hhcCccchhhcCCCC-CEEEEcCCCCHHHHHHHHHHHhcCCceeeec
Q 044797 75 IFFGHEGVLKGLQKG-AVIILQSTILPSHMQKLEKTFTGNLTFYILE 120 (173)
Q Consensus 75 v~~~~~~i~~~l~~g-~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~ 120 (173)
+.. ....+.|+ +++.... +++. .+.+++.|...+-.
T Consensus 319 ivL----~ar~l~p~~kIIa~v~--~~~~----~~~L~~~GaD~VIs 355 (393)
T PRK10537 319 VVL----AAKEMSSDVKTVAAVN--DSKN----LEKIKRVHPDMIFS 355 (393)
T ss_pred HHH----HHHHhCCCCcEEEEEC--CHHH----HHHHHhcCCCEEEC
Confidence 332 12234444 4444433 2332 34555667766543
No 416
>PRK06182 short chain dehydrogenase; Validated
Probab=96.75 E-value=0.023 Score=43.63 Aligned_cols=42 Identities=17% Similarity=0.106 Sum_probs=34.9
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML 44 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~ 44 (173)
+++.|.| .|.+|..+++.|.+.|++|++.+|++++++.+.+.
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~ 46 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASL 46 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhC
Confidence 4566666 59999999999999999999999999887665543
No 417
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.74 E-value=0.0038 Score=39.02 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=30.5
Q ss_pred eEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797 4 KVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP 36 (173)
Q Consensus 4 ~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~ 36 (173)
||.|||.|..|.-+|..|.+.|.+|+++++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence 688999999999999999999999999988754
No 418
>PRK07326 short chain dehydrogenase; Provisional
Probab=96.74 E-value=0.018 Score=43.01 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=34.2
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF 42 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~ 42 (173)
++|.|+| .|.+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA 47 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence 4687886 599999999999999999999999988766543
No 419
>PLN02214 cinnamoyl-CoA reductase
Probab=96.72 E-value=0.0054 Score=48.99 Aligned_cols=66 Identities=14% Similarity=0.002 Sum_probs=46.1
Q ss_pred CCeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHH-----HHHHc--CCc-------eecChhhhhcCCCEEEEec
Q 044797 2 ASKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVD-----KFFML--GGI-------RSASPMDAGKDVSALVVVI 66 (173)
Q Consensus 2 ~~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~-----~~~~~--g~~-------~~~~~~~~~~~~dvii~~v 66 (173)
+++|.|.|. |.+|+.+++.|+++|++|++..|+.++.. .+... .+. -..+..++++++|+||.+.
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A 89 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHTA 89 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEec
Confidence 467888976 99999999999999999999988765421 11110 111 1123445677899999886
Q ss_pred c
Q 044797 67 S 67 (173)
Q Consensus 67 ~ 67 (173)
.
T Consensus 90 ~ 90 (342)
T PLN02214 90 S 90 (342)
T ss_pred C
Confidence 4
No 420
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.72 E-value=0.02 Score=47.77 Aligned_cols=110 Identities=9% Similarity=0.057 Sum_probs=69.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh-HHHHHHHHcC-Cceec--ChhhhhcCCCEEEEeccChhhhhhhhcC
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD-PLVDKFFMLG-GIRSA--SPMDAGKDVSALVVVISHVDQIDDIFFG 78 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~-~~~~~~~~~g-~~~~~--~~~~~~~~~dvii~~v~~~~~~~~v~~~ 78 (173)
++|.|||.|.++..=++.|++.|.+|+++.+.- +.+..+.+.| +.... -..+.++++++||.|+.++..-+.+...
T Consensus 13 ~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n~~i~~~ 92 (457)
T PRK10637 13 RDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDAVNQRVSEA 92 (457)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHHHhHHHHHH
Confidence 689999999999999999999999999986652 3344444443 22211 1234578899999998765432332210
Q ss_pred c--cc--------------hhh-cCCCCCEEEEcCC--CCHHHHHHHHHHHhc
Q 044797 79 H--EG--------------VLK-GLQKGAVIILQST--ILPSHMQKLEKTFTG 112 (173)
Q Consensus 79 ~--~~--------------i~~-~l~~g~~ii~~st--~~~~~~~~l~~~l~~ 112 (173)
. .+ +.+ .++.|.+.+.+|| .+|...+.+.+.+++
T Consensus 93 a~~~~~lvN~~d~~~~~~f~~pa~~~~g~l~iaisT~G~sP~~a~~lr~~ie~ 145 (457)
T PRK10637 93 AEARRIFCNVVDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLREKLES 145 (457)
T ss_pred HHHcCcEEEECCCcccCeEEEeeEEecCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 0 00 111 1344777776665 568878877777754
No 421
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=96.72 E-value=0.0061 Score=47.85 Aligned_cols=65 Identities=15% Similarity=0.054 Sum_probs=45.2
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHH---HHHHc-----CCc-------eecChhhhhcCCCEEEEec
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVD---KFFML-----GGI-------RSASPMDAGKDVSALVVVI 66 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~---~~~~~-----g~~-------~~~~~~~~~~~~dvii~~v 66 (173)
++|.|.| +|.+|+.+++.|++.|++|++.+|++++.. .+... .+. -.....++++++|.||.+.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A 84 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHTA 84 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEeC
Confidence 5788887 799999999999999999998888765432 21111 111 1123456677899998876
Q ss_pred c
Q 044797 67 S 67 (173)
Q Consensus 67 ~ 67 (173)
.
T Consensus 85 ~ 85 (322)
T PLN02662 85 S 85 (322)
T ss_pred C
Confidence 3
No 422
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=96.71 E-value=0.02 Score=46.19 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=53.9
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecC-------hhhhh-----cCCCEEEEeccCh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSAS-------PMDAG-----KDVSALVVVISHV 69 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~-------~~~~~-----~~~dvii~~v~~~ 69 (173)
.+|.|.|+|.+|...++.+...|. +|++.++++++.+.+.+.|+...-+ ..+.+ ...|+++-++..+
T Consensus 187 ~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~G~~ 266 (368)
T TIGR02818 187 DTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECIGNV 266 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECCCCH
Confidence 468899999999999999999998 7999999999998887777642211 11111 1589999998754
Q ss_pred hhhhhhh
Q 044797 70 DQIDDIF 76 (173)
Q Consensus 70 ~~~~~v~ 76 (173)
..+.+.+
T Consensus 267 ~~~~~~~ 273 (368)
T TIGR02818 267 NVMRAAL 273 (368)
T ss_pred HHHHHHH
Confidence 4444443
No 423
>PRK07074 short chain dehydrogenase; Provisional
Probab=96.70 E-value=0.021 Score=43.26 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=36.4
Q ss_pred CCCeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797 1 MASKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM 43 (173)
Q Consensus 1 m~~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~ 43 (173)
|.+++.|.|+ |.+|..+++.|++.|++|++.+|++++.+.+.+
T Consensus 1 ~~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (257)
T PRK07074 1 TKRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFAD 44 (257)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 5667888865 899999999999999999999999887765543
No 424
>PLN02740 Alcohol dehydrogenase-like
Probab=96.70 E-value=0.019 Score=46.45 Aligned_cols=74 Identities=18% Similarity=0.170 Sum_probs=54.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecC-------hhhhh----c-CCCEEEEeccCh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSAS-------PMDAG----K-DVSALVVVISHV 69 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~-------~~~~~----~-~~dvii~~v~~~ 69 (173)
.+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+...-+ ..+.+ . ..|+++-++..+
T Consensus 200 ~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~G~~ 279 (381)
T PLN02740 200 SSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECAGNV 279 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCCCh
Confidence 478899999999999999999998 6999999999999888877642211 11211 1 489999998755
Q ss_pred hhhhhhh
Q 044797 70 DQIDDIF 76 (173)
Q Consensus 70 ~~~~~v~ 76 (173)
..+...+
T Consensus 280 ~~~~~a~ 286 (381)
T PLN02740 280 EVLREAF 286 (381)
T ss_pred HHHHHHH
Confidence 4444443
No 425
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.69 E-value=0.0078 Score=47.45 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=36.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHH-HHHHHcCCc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLV-DKFFMLGGI 47 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~-~~~~~~g~~ 47 (173)
++++|+|+|-+|+.-.+...+.|++|+++|++..+. +.+...|+.
T Consensus 183 ~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd 228 (360)
T KOG0023|consen 183 KWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGAD 228 (360)
T ss_pred cEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcc
Confidence 589999999999998899999999999999997444 444446653
No 426
>PRK08163 salicylate hydroxylase; Provisional
Probab=96.68 E-value=0.0026 Score=51.55 Aligned_cols=34 Identities=29% Similarity=0.279 Sum_probs=31.7
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP 36 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~ 36 (173)
++|.|||.|..|..+|..|.+.|++|++++++++
T Consensus 5 ~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~ 38 (396)
T PRK08163 5 TPVLIVGGGIGGLAAALALARQGIKVKLLEQAAE 38 (396)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcc
Confidence 4899999999999999999999999999998754
No 427
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=96.66 E-value=0.022 Score=44.81 Aligned_cols=87 Identities=17% Similarity=0.184 Sum_probs=60.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-cCh-hh----hhcCCCEEEEeccChhhhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-ASP-MD----AGKDVSALVVVISHVDQIDDIF 76 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~~~-~~----~~~~~dvii~~v~~~~~~~~v~ 76 (173)
.+|.|.|+|.+|..+++.+...|++|++.++++++.+.+.+.|.... ... .+ ..+..|+++.++.........+
T Consensus 164 ~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~ 243 (330)
T cd08245 164 ERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGAAAEAAL 243 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHHHHHHHH
Confidence 46889999999999999999999999999999998888766664321 111 01 1235899998876444443333
Q ss_pred cCccchhhcCCCCCEEEEcC
Q 044797 77 FGHEGVLKGLQKGAVIILQS 96 (173)
Q Consensus 77 ~~~~~i~~~l~~g~~ii~~s 96 (173)
..++++..++..+
T Consensus 244 -------~~l~~~G~~i~~~ 256 (330)
T cd08245 244 -------GGLRRGGRIVLVG 256 (330)
T ss_pred -------HhcccCCEEEEEC
Confidence 4566666776654
No 428
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=96.66 E-value=0.025 Score=43.27 Aligned_cols=34 Identities=12% Similarity=0.138 Sum_probs=31.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP 36 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~ 36 (173)
.++-|+|.|..+.++++.+...|++|+++|..++
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 4788999999999999999999999999997765
No 429
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=96.65 E-value=0.023 Score=45.54 Aligned_cols=88 Identities=13% Similarity=0.206 Sum_probs=61.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHHHcCCcee-c----Chhh----hh--cCCCEEEEeccChh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFFMLGGIRS-A----SPMD----AG--KDVSALVVVISHVD 70 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~~-~----~~~~----~~--~~~dvii~~v~~~~ 70 (173)
.+|.|.|+|.+|...++.+...|.+ |++.++++++.+.+.+.|+... + +..+ .. ...|+++-++..+.
T Consensus 178 ~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g~~~ 257 (358)
T TIGR03451 178 DSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVGRPE 257 (358)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCCCHH
Confidence 4788999999999999999999985 8999999999888877775321 1 1111 12 24799999987544
Q ss_pred hhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797 71 QIDDIFFGHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 71 ~~~~v~~~~~~i~~~l~~g~~ii~~st 97 (173)
.++..+ ..++++..++..+.
T Consensus 258 ~~~~~~-------~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 258 TYKQAF-------YARDLAGTVVLVGV 277 (358)
T ss_pred HHHHHH-------HHhccCCEEEEECC
Confidence 444333 34566666665543
No 430
>PRK06482 short chain dehydrogenase; Provisional
Probab=96.65 E-value=0.026 Score=43.30 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=37.1
Q ss_pred CCCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797 1 MASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM 43 (173)
Q Consensus 1 m~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~ 43 (173)
|.+++.|.| .|.+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus 1 m~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~ 44 (276)
T PRK06482 1 MSKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKA 44 (276)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 667788886 6999999999999999999999999887766544
No 431
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.64 E-value=0.0084 Score=49.49 Aligned_cols=65 Identities=15% Similarity=0.259 Sum_probs=47.9
Q ss_pred CeEEEEeCChh-hHHHHHHHHHC-----CCeEEEEcCChHHHHHHHH--------cC----CceecChhhhhcCCCEEEE
Q 044797 3 SKVGFVGLDEY-SVDMAASLIRS-----GYKVQAFEISDPLVDKFFM--------LG----GIRSASPMDAGKDVSALVV 64 (173)
Q Consensus 3 ~~IgiiG~G~m-G~~ia~~l~~~-----g~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~~dvii~ 64 (173)
+||+|||.|.. ...+.+.|+.. +.+|..+|.++++.+.... .| +..+.+.+++++++|+||.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~ 80 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 59999999984 22345555533 3589999999988865322 23 3467889999999999999
Q ss_pred ecc
Q 044797 65 VIS 67 (173)
Q Consensus 65 ~v~ 67 (173)
...
T Consensus 81 ~ir 83 (425)
T cd05197 81 QFR 83 (425)
T ss_pred eee
Confidence 875
No 432
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=96.64 E-value=0.014 Score=47.74 Aligned_cols=111 Identities=10% Similarity=-0.003 Sum_probs=63.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH--------cCCceecChhhhhc--CCCEEEEeccChhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM--------LGGIRSASPMDAGK--DVSALVVVISHVDQ 71 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~~dvii~~v~~~~~ 71 (173)
.+|.|||+|.+|+.++++|...|. +++++|.+.=....+.. .|-..+....+.+. +.++-+.+.+....
T Consensus 43 ~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~ 122 (392)
T PRK07878 43 ARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRLD 122 (392)
T ss_pred CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEeccCC
Confidence 689999999999999999999996 68889876322211111 12111111111111 34555544432111
Q ss_pred hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
.+. ..+.++.-++|++++- .+..-..+.+.....++.++...
T Consensus 123 ~~~-------~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p~v~~~ 164 (392)
T PRK07878 123 PSN-------AVELFSQYDLILDGTD-NFATRYLVNDAAVLAGKPYVWGS 164 (392)
T ss_pred hhH-------HHHHHhcCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEE
Confidence 111 1223344578888754 45555567777777888887653
No 433
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.63 E-value=0.0032 Score=51.35 Aligned_cols=33 Identities=27% Similarity=0.463 Sum_probs=31.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD 35 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~ 35 (173)
.+|.|||.|-+|.+.|..|++.|++|+++|+.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 599999999999999999999999999999875
No 434
>PRK07454 short chain dehydrogenase; Provisional
Probab=96.63 E-value=0.024 Score=42.51 Aligned_cols=40 Identities=10% Similarity=0.191 Sum_probs=33.7
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF 42 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~ 42 (173)
+++.|.| .|.+|..+++.|+++|++|.+.+|++++.+.+.
T Consensus 7 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (241)
T PRK07454 7 PRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALA 47 (241)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4677776 599999999999999999999999987765543
No 435
>PRK06180 short chain dehydrogenase; Provisional
Probab=96.63 E-value=0.026 Score=43.50 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=34.7
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM 43 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~ 43 (173)
++|.|.| .|.+|.++++.|++.|++|.+.+|++++.+.+.+
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEA 46 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHh
Confidence 4577775 5999999999999999999999999988766554
No 436
>PRK08643 acetoin reductase; Validated
Probab=96.62 E-value=0.021 Score=43.20 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=34.5
Q ss_pred CCCeEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797 1 MASKVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF 42 (173)
Q Consensus 1 m~~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~ 42 (173)
|.+++.|+ |.|.+|..+++.|++.|++|.+.+|++++.+++.
T Consensus 1 ~~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 43 (256)
T PRK08643 1 MSKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAA 43 (256)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 45566666 6889999999999999999999999987765543
No 437
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.62 E-value=0.012 Score=45.97 Aligned_cols=73 Identities=21% Similarity=0.158 Sum_probs=55.5
Q ss_pred CeEEEEeCC-hhhHHHHHHHHHC----CCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797 3 SKVGFVGLD-EYSVDMAASLIRS----GYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFF 77 (173)
Q Consensus 3 ~~IgiiG~G-~mG~~ia~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~ 77 (173)
+++.|||-+ .+|.+++..|.+. +..|+++... +.++.+.++.||+||+++.-+.-+.
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~--------------T~~l~~~~~~ADIvV~AvG~p~~i~---- 215 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQ--------------SENLTEILKTADIIIAAIGVPLFIK---- 215 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEccCCcCccC----
Confidence 578888754 5799999999888 7888887643 2357777899999999998553221
Q ss_pred CccchhhcCCCCCEEEEcCCC
Q 044797 78 GHEGVLKGLQKGAVIILQSTI 98 (173)
Q Consensus 78 ~~~~i~~~l~~g~~ii~~st~ 98 (173)
.+.+++|+++||.+..
T Consensus 216 -----~~~ik~GavVIDvGin 231 (287)
T PRK14181 216 -----EEMIAEKAVIVDVGTS 231 (287)
T ss_pred -----HHHcCCCCEEEEeccc
Confidence 2467899999999764
No 438
>PRK05865 hypothetical protein; Provisional
Probab=96.62 E-value=0.0074 Score=53.82 Aligned_cols=62 Identities=11% Similarity=0.093 Sum_probs=44.9
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCc-------eecChhhhhcCCCEEEEecc
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGI-------RSASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-------~~~~~~~~~~~~dvii~~v~ 67 (173)
|||.|.| .|.+|+.+++.|.+.|++|++++|+.... .. .++. -..+..++++++|+||.+..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~--~~-~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa 70 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS--WP-SSADFIAADIRDATAVESAMTGADVVAHCAW 70 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh--cc-cCceEEEeeCCCHHHHHHHHhCCCEEEECCC
Confidence 4899997 59999999999999999999999875321 11 1111 11234456778999998864
No 439
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=96.60 E-value=0.027 Score=44.60 Aligned_cols=87 Identities=22% Similarity=0.292 Sum_probs=60.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-c--Ch---hhhhcCCCEEEEeccChhhhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-A--SP---MDAGKDVSALVVVISHVDQIDDIF 76 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~--~~---~~~~~~~dvii~~v~~~~~~~~v~ 76 (173)
.++.|.|+|.+|..+++.+...|.+|++.++++++.+.+.+.|+... + +. .+.-...|+++.+++.+......+
T Consensus 171 ~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~ 250 (337)
T cd05283 171 KRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASHDLDPYL 250 (337)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcchHHHHH
Confidence 46888999999999999999999999999999888887776665321 1 11 112346899999987542233333
Q ss_pred cCccchhhcCCCCCEEEEcC
Q 044797 77 FGHEGVLKGLQKGAVIILQS 96 (173)
Q Consensus 77 ~~~~~i~~~l~~g~~ii~~s 96 (173)
..++++..++..+
T Consensus 251 -------~~l~~~G~~v~~g 263 (337)
T cd05283 251 -------SLLKPGGTLVLVG 263 (337)
T ss_pred -------HHhcCCCEEEEEe
Confidence 4556666666654
No 440
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.60 E-value=0.011 Score=47.51 Aligned_cols=73 Identities=14% Similarity=0.201 Sum_probs=55.9
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+++.||| ...+|.+++..|.+.+..|+++... +.++.+..++||+||.++.-+.-+.
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~--------------T~nl~~~~r~ADIVIsAvGkp~~i~-------- 289 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSR--------------TKNPEEITREADIIISAVGQPNMVR-------- 289 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCeEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCcCC--------
Confidence 5778886 4567999999999999999988643 2356778899999999998554322
Q ss_pred hhhcCCCCCEEEEcCCC
Q 044797 82 VLKGLQKGAVIILQSTI 98 (173)
Q Consensus 82 i~~~l~~g~~ii~~st~ 98 (173)
.+.+++|+++||.+..
T Consensus 290 -~d~vK~GAvVIDVGIn 305 (364)
T PLN02616 290 -GSWIKPGAVVIDVGIN 305 (364)
T ss_pred -HHHcCCCCEEEecccc
Confidence 2457899999998754
No 441
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=96.60 E-value=0.02 Score=45.53 Aligned_cols=74 Identities=12% Similarity=0.206 Sum_probs=58.6
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecChh----------hhhc-CCCEEEEeccChh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSASPM----------DAGK-DVSALVVVISHVD 70 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~~~----------~~~~-~~dvii~~v~~~~ 70 (173)
.+++|+|+|.+|.+..+.+...|. .+.+.|.+++|.+...+.|++..-++. ++.. .+|..|.|+-...
T Consensus 187 ~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~G~~~ 266 (366)
T COG1062 187 DTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECVGNVE 266 (366)
T ss_pred CeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEccCCHH
Confidence 368999999999999999999996 688999999999999888876433332 2223 6899999988776
Q ss_pred hhhhhh
Q 044797 71 QIDDIF 76 (173)
Q Consensus 71 ~~~~v~ 76 (173)
.+++.+
T Consensus 267 ~~~~al 272 (366)
T COG1062 267 VMRQAL 272 (366)
T ss_pred HHHHHH
Confidence 666665
No 442
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=96.59 E-value=0.029 Score=42.44 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=35.1
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM 43 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~ 43 (173)
|+|.|.| .|.+|..+++.|.+.|++|.+.+|++++.+.+.+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 42 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKD 42 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 4788886 5999999999999999999999999887766543
No 443
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=96.58 E-value=0.032 Score=43.65 Aligned_cols=85 Identities=14% Similarity=0.117 Sum_probs=59.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhhh--hcCCCEEEEeccChhhhhhhhcCcc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMDA--GKDVSALVVVISHVDQIDDIFFGHE 80 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~--~~~~dvii~~v~~~~~~~~v~~~~~ 80 (173)
.+|.|.|.|.+|..+++.+...|.+|++.++++++.+.+.+.|+....+..+. -...|+++-++.....++..+
T Consensus 157 ~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~~~---- 232 (319)
T cd08242 157 DKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPSGLELAL---- 232 (319)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChHHHHHHH----
Confidence 46888899999999999999999999999999999888887776543333221 135899999876433333332
Q ss_pred chhhcCCCCCEEEE
Q 044797 81 GVLKGLQKGAVIIL 94 (173)
Q Consensus 81 ~i~~~l~~g~~ii~ 94 (173)
..++++..++.
T Consensus 233 ---~~l~~~g~~v~ 243 (319)
T cd08242 233 ---RLVRPRGTVVL 243 (319)
T ss_pred ---HHhhcCCEEEE
Confidence 34455555544
No 444
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=96.57 E-value=0.013 Score=46.33 Aligned_cols=77 Identities=12% Similarity=0.013 Sum_probs=51.0
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCC-eEEEE-cCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhcCc
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGY-KVQAF-EISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFFGH 79 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~-~V~~~-d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~~~ 79 (173)
.||+|+| .|..|.-+.+.|..+.. ++... .++. + . ..+.++.++++|++|+|+|+... .+..
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~-----~-----~-~~~~~~~~~~~D~vFlalp~~~s-~~~~--- 66 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR-----K-----D-AAERAKLLNAADVAILCLPDDAA-REAV--- 66 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc-----c-----C-cCCHhHhhcCCCEEEECCCHHHH-HHHH---
Confidence 5899995 79999999999998763 44322 2221 1 1 12345666789999999996533 3333
Q ss_pred cchhhcCCCCCEEEEcCC
Q 044797 80 EGVLKGLQKGAVIILQST 97 (173)
Q Consensus 80 ~~i~~~l~~g~~ii~~st 97 (173)
. .....|..|||.|+
T Consensus 67 ~---~~~~~g~~VIDlSa 81 (310)
T TIGR01851 67 S---LVDNPNTCIIDAST 81 (310)
T ss_pred H---HHHhCCCEEEECCh
Confidence 1 22356889999984
No 445
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.57 E-value=0.014 Score=45.74 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=54.9
Q ss_pred CeEEEEe-CChhhHHHHHHHHHC----CCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRS----GYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFF 77 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~ 77 (173)
+++.||| ...+|.+++..|.+. +..|+++... +.++.+.+++||+||+++.-+.-+.
T Consensus 162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~--------------T~~l~~~~~~ADIvVsAvGkp~~i~---- 223 (297)
T PRK14168 162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTR--------------SKNLARHCQRADILIVAAGVPNLVK---- 223 (297)
T ss_pred CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCC--------------CcCHHHHHhhCCEEEEecCCcCccC----
Confidence 5788886 456899999999887 6788887543 2356778899999999997544221
Q ss_pred CccchhhcCCCCCEEEEcCCC
Q 044797 78 GHEGVLKGLQKGAVIILQSTI 98 (173)
Q Consensus 78 ~~~~i~~~l~~g~~ii~~st~ 98 (173)
.+.+++|+++||.+..
T Consensus 224 -----~~~ik~gavVIDvGin 239 (297)
T PRK14168 224 -----PEWIKPGATVIDVGVN 239 (297)
T ss_pred -----HHHcCCCCEEEecCCC
Confidence 2457899999999754
No 446
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=96.55 E-value=0.0039 Score=50.69 Aligned_cols=36 Identities=17% Similarity=0.258 Sum_probs=33.7
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP 36 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~ 36 (173)
|..+|.|||.|..|...|..|.+.|++|.++++.+.
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 778999999999999999999999999999998764
No 447
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.54 E-value=0.0029 Score=52.46 Aligned_cols=36 Identities=31% Similarity=0.483 Sum_probs=32.4
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP 36 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~ 36 (173)
|.++++|||+|.-|.+.|++|++.|+++++++|+.+
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDD 40 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCC
Confidence 357999999999999999999999999999988653
No 448
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=96.53 E-value=0.007 Score=41.07 Aligned_cols=78 Identities=17% Similarity=0.134 Sum_probs=50.9
Q ss_pred hhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecCh---------hhhhc--CCCEEEEeccChhhhhhhhcCccc
Q 044797 13 YSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASP---------MDAGK--DVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 13 mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~---------~~~~~--~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
+|...++.++..|.+|++.++++++.+.+++.|+...-+. .+... .+|++|.|+..+..++..+
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~----- 76 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAI----- 76 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHH-----
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHH-----
Confidence 6777788888899999999999999999988875432111 12222 4777888877554444333
Q ss_pred hhhcCCCCCEEEEcCC
Q 044797 82 VLKGLQKGAVIILQST 97 (173)
Q Consensus 82 i~~~l~~g~~ii~~st 97 (173)
+.++++..++..+.
T Consensus 77 --~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 77 --KLLRPGGRIVVVGV 90 (130)
T ss_dssp --HHEEEEEEEEEESS
T ss_pred --HHhccCCEEEEEEc
Confidence 34455555555543
No 449
>PRK05868 hypothetical protein; Validated
Probab=96.53 E-value=0.0038 Score=50.48 Aligned_cols=35 Identities=26% Similarity=0.162 Sum_probs=32.4
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP 36 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~ 36 (173)
|++|.|||.|..|..+|..|.++|++|+++++.++
T Consensus 1 ~~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 1 MKTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 56899999999999999999999999999998764
No 450
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=96.53 E-value=0.033 Score=44.85 Aligned_cols=74 Identities=14% Similarity=0.158 Sum_probs=53.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecC-------hhhhh-----cCCCEEEEeccCh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSAS-------PMDAG-----KDVSALVVVISHV 69 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~-------~~~~~-----~~~dvii~~v~~~ 69 (173)
.+|.|.|.|.+|...++.+...|. .|++.++++++.+.+.+.|+...-+ ..+.+ ..+|+|+-++..+
T Consensus 188 ~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~g~~ 267 (368)
T cd08300 188 STVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECIGNV 267 (368)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECCCCh
Confidence 468899999999999999999998 6999999999998887777532111 11211 1489999998754
Q ss_pred hhhhhhh
Q 044797 70 DQIDDIF 76 (173)
Q Consensus 70 ~~~~~v~ 76 (173)
..+...+
T Consensus 268 ~~~~~a~ 274 (368)
T cd08300 268 KVMRAAL 274 (368)
T ss_pred HHHHHHH
Confidence 4444443
No 451
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=96.52 E-value=0.03 Score=45.42 Aligned_cols=87 Identities=14% Similarity=0.109 Sum_probs=56.7
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH-HHHHHHcCCcee-c--Ch---hhhhcCCCEEEEeccChhhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL-VDKFFMLGGIRS-A--SP---MDAGKDVSALVVVISHVDQIDDI 75 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~-~~~~~~~g~~~~-~--~~---~~~~~~~dvii~~v~~~~~~~~v 75 (173)
.+|.+.|+|.+|...++.....|.+|++.++++++ .+.+.+.|+... + +. .+.....|+++-++..+..+...
T Consensus 180 ~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~~~~~ 259 (375)
T PLN02178 180 KRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHALLPL 259 (375)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHHHHHH
Confidence 36888899999999999999999999888887655 455556676422 1 11 12223579999998754333333
Q ss_pred hcCccchhhcCCCCCEEEEcC
Q 044797 76 FFGHEGVLKGLQKGAVIILQS 96 (173)
Q Consensus 76 ~~~~~~i~~~l~~g~~ii~~s 96 (173)
+ +.++++..++..+
T Consensus 260 ~-------~~l~~~G~iv~vG 273 (375)
T PLN02178 260 F-------SLLKVSGKLVALG 273 (375)
T ss_pred H-------HhhcCCCEEEEEc
Confidence 3 3345555555443
No 452
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.52 E-value=0.011 Score=49.51 Aligned_cols=64 Identities=8% Similarity=-0.077 Sum_probs=44.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH-H---HHHHHHcCCce-ecChhhhhcCCCEEEEec
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP-L---VDKFFMLGGIR-SASPMDAGKDVSALVVVI 66 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~-~---~~~~~~~g~~~-~~~~~~~~~~~dvii~~v 66 (173)
+||+|+|+|.-|.+.++.|.+.|.+|+++|.++. . .+++.+.+... .....+.+.++|+||.+-
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~Sp 77 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSP 77 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECC
Confidence 5899999999999999999999999999995432 1 12343322111 112235567899888764
No 453
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=96.51 E-value=0.0029 Score=51.13 Aligned_cols=64 Identities=13% Similarity=0.009 Sum_probs=42.7
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCc-------eecChhhhhcCCCEEEEec
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGI-------RSASPMDAGKDVSALVVVI 66 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~-------~~~~~~~~~~~~dvii~~v 66 (173)
|+|.|.|. |.+|+.+++.|.+.|++|++.+|.+............ ...+...+++++|+||-+.
T Consensus 22 ~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 22 LRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 68999975 9999999999999999999999864321110000111 1112234456789999876
No 454
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=96.51 E-value=0.019 Score=45.74 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=24.2
Q ss_pred eEEEEeCChhhHHHHHHHHHCC----CeEEEEc
Q 044797 4 KVGFVGLDEYSVDMAASLIRSG----YKVQAFE 32 (173)
Q Consensus 4 ~IgiiG~G~mG~~ia~~l~~~g----~~V~~~d 32 (173)
||||.|+|++|..+.+.+.+.+ ++|...+
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaIn 33 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALN 33 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 6999999999999999988753 6776554
No 455
>PRK07774 short chain dehydrogenase; Provisional
Probab=96.51 E-value=0.031 Score=42.04 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=33.1
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHH
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKF 41 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 41 (173)
+++.|.|. |.+|..+++.|.+.|++|++.+|++++.+.+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV 46 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 56777765 9999999999999999999999997765444
No 456
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.51 E-value=0.012 Score=51.29 Aligned_cols=65 Identities=18% Similarity=0.317 Sum_probs=47.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHH---------------------HHHHHHcCCceec--------Chh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPL---------------------VDKFFMLGGIRSA--------SPM 53 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~---------------------~~~~~~~g~~~~~--------~~~ 53 (173)
++|.|||.|..|...|..|.+.|++|+++++++.. .+.+...|++... +.+
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~~~ 273 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDITLE 273 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccCHH
Confidence 58999999999999999999999999999976431 2334445654321 223
Q ss_pred hhhcCCCEEEEecc
Q 044797 54 DAGKDVSALVVVIS 67 (173)
Q Consensus 54 ~~~~~~dvii~~v~ 67 (173)
+.....|.||+++.
T Consensus 274 ~~~~~~DaVilAtG 287 (652)
T PRK12814 274 ELQKEFDAVLLAVG 287 (652)
T ss_pred HHHhhcCEEEEEcC
Confidence 33345899999875
No 457
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.51 E-value=0.011 Score=50.55 Aligned_cols=66 Identities=21% Similarity=0.242 Sum_probs=48.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh---------------------HHHHHHHHcCCceec--------Chh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD---------------------PLVDKFFMLGGIRSA--------SPM 53 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~---------------------~~~~~~~~~g~~~~~--------~~~ 53 (173)
++|.|||.|..|...|..|.+.|++|+++|+.+ .+++.+.+.|+.... +..
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~~ 217 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDITLE 217 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCCHH
Confidence 589999999999999999999999999999642 334455566754221 122
Q ss_pred hhhcCCCEEEEeccC
Q 044797 54 DAGKDVSALVVVISH 68 (173)
Q Consensus 54 ~~~~~~dvii~~v~~ 68 (173)
+.-...|+||+++..
T Consensus 218 ~~~~~~D~Vi~AtG~ 232 (564)
T PRK12771 218 QLEGEFDAVFVAIGA 232 (564)
T ss_pred HHHhhCCEEEEeeCC
Confidence 233468999999864
No 458
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=96.50 E-value=0.011 Score=47.38 Aligned_cols=65 Identities=15% Similarity=0.034 Sum_probs=45.9
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc-----CCce-------ecChhhhhcCCCEEEEecc
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML-----GGIR-------SASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~-----g~~~-------~~~~~~~~~~~dvii~~v~ 67 (173)
|+|.|.| +|.+|+.+++.|++.|++|++.+|++++.+.+.+. ++.. .....+++++.|.||-+..
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~ 88 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVAA 88 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECCc
Confidence 6898997 69999999999999999999988887665443221 1111 1123455667898887653
No 459
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=96.50 E-value=0.014 Score=48.43 Aligned_cols=111 Identities=8% Similarity=-0.011 Sum_probs=63.9
Q ss_pred eEEEEeCChhhH-HHHHHHHHCCCeEEEEcCChH--HHHHHHHcCCcee--cChhhhhcCCCEEEEec--cC-hhhhhhh
Q 044797 4 KVGFVGLDEYSV-DMAASLIRSGYKVQAFEISDP--LVDKFFMLGGIRS--ASPMDAGKDVSALVVVI--SH-VDQIDDI 75 (173)
Q Consensus 4 ~IgiiG~G~mG~-~ia~~l~~~g~~V~~~d~~~~--~~~~~~~~g~~~~--~~~~~~~~~~dvii~~v--~~-~~~~~~v 75 (173)
+|-|||.|-+|. ++|+.|.+.|++|+++|.++. ..+.+.+.|++.. .+.....+++|+||.+- |+ .+.+...
T Consensus 1 ~~hfigigG~gm~~la~~l~~~G~~V~~~D~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~SpgI~~~~~~~~~a 80 (448)
T TIGR01081 1 HIHILGICGTFMGGLAMIAKQLGHEVTGSDANVYPPMSTQLEAQGIEIIEGFDAAQLEPKPDLVVIGNAMKRGNPCVEAV 80 (448)
T ss_pred CEEEEEECHHhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEeCCCCHHHCCCCCCEEEECCCCCCCCHHHHHH
Confidence 478999999995 578888999999999997642 2334656676553 23444445789887653 32 2222222
Q ss_pred hc------Cccchhhc-CCCCC-EEE-EcCCCCHHHHHHHHHHHhcCC
Q 044797 76 FF------GHEGVLKG-LQKGA-VII-LQSTILPSHMQKLEKTFTGNL 114 (173)
Q Consensus 76 ~~------~~~~i~~~-l~~g~-~ii-~~st~~~~~~~~l~~~l~~~g 114 (173)
.. .+.++... ..+.. +|- .-|.++..++.-+...|+..|
T Consensus 81 ~~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g 128 (448)
T TIGR01081 81 LNLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCG 128 (448)
T ss_pred HHCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence 11 01123222 22333 453 444555555566666666543
No 460
>PRK07236 hypothetical protein; Provisional
Probab=96.49 E-value=0.0045 Score=50.14 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=32.2
Q ss_pred CCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797 2 ASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP 36 (173)
Q Consensus 2 ~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~ 36 (173)
.++|.|||.|..|..+|..|.+.|++|+++++.+.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 36899999999999999999999999999998753
No 461
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.49 E-value=0.014 Score=45.64 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=54.6
Q ss_pred CeEEEEeC-ChhhHHHHHHHHH----CCCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797 3 SKVGFVGL-DEYSVDMAASLIR----SGYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFF 77 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~----~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~ 77 (173)
+++.|||- ..+|.+++..|.+ .+..|+.+..+. .++.+.+++||+||.++..+.-+.
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG~p~li~---- 219 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIGRPRFVT---- 219 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCCcCC----
Confidence 57888864 5679999999988 678888887442 246778899999999997554322
Q ss_pred CccchhhcCCCCCEEEEcCCC
Q 044797 78 GHEGVLKGLQKGAVIILQSTI 98 (173)
Q Consensus 78 ~~~~i~~~l~~g~~ii~~st~ 98 (173)
.+.+++|+++||.+..
T Consensus 220 -----~~~vk~GavVIDVGi~ 235 (286)
T PRK14184 220 -----ADMVKPGAVVVDVGIN 235 (286)
T ss_pred -----HHHcCCCCEEEEeeee
Confidence 2456899999998753
No 462
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=96.49 E-value=0.03 Score=42.45 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=58.1
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc----CCc---eecChhhhhc---CCCEEEEe-----cc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML----GGI---RSASPMDAGK---DVSALVVV-----IS 67 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~----g~~---~~~~~~~~~~---~~dvii~~-----v~ 67 (173)
++|.-|||| |..++..+++.|..|++.|.+++.++..+.. |+. ...+.+++.. .-|+|+.+ +|
T Consensus 61 ~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 61 LRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred CeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 478889998 5689999999999999999999988765532 333 2233445443 57887764 56
Q ss_pred ChhhhhhhhcCccchhhcCCCCCEEEEc
Q 044797 68 HVDQIDDIFFGHEGVLKGLQKGAVIILQ 95 (173)
Q Consensus 68 ~~~~~~~v~~~~~~i~~~l~~g~~ii~~ 95 (173)
+|.. ++ ....+.++||.+++.+
T Consensus 139 dp~~---~~---~~c~~lvkP~G~lf~S 160 (243)
T COG2227 139 DPES---FL---RACAKLVKPGGILFLS 160 (243)
T ss_pred CHHH---HH---HHHHHHcCCCcEEEEe
Confidence 5543 33 2355678887766554
No 463
>PRK05693 short chain dehydrogenase; Provisional
Probab=96.48 E-value=0.047 Score=41.91 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=34.6
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML 44 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~ 44 (173)
+++.|.| .|.+|..+++.|.+.|++|++.+|++++.+.+.+.
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~ 44 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAA 44 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC
Confidence 4566665 58999999999999999999999998877665543
No 464
>PRK06753 hypothetical protein; Provisional
Probab=96.48 E-value=0.0042 Score=49.91 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=31.9
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP 36 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~ 36 (173)
|+|.|||.|..|...|..|.+.|++|++++++++
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 5899999999999999999999999999998864
No 465
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=96.48 E-value=0.06 Score=38.35 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=61.5
Q ss_pred CeEEEEeC--ChhhHHHHHHHHHCCCeEEEEcCCh----H---HHHHH----HHcC--CceecChhhhhcCCCEEEEecc
Q 044797 3 SKVGFVGL--DEYSVDMAASLIRSGYKVQAFEISD----P---LVDKF----FMLG--GIRSASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 3 ~~IgiiG~--G~mG~~ia~~l~~~g~~V~~~d~~~----~---~~~~~----~~~g--~~~~~~~~~~~~~~dvii~~v~ 67 (173)
.||++||- +++..+++..+...|.++.++.+.. . -++.. .+.| +..+++.+++++++|+|..-.-
T Consensus 3 l~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~~~ 82 (158)
T PF00185_consen 3 LKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTDRW 82 (158)
T ss_dssp EEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEESS
T ss_pred CEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEcCc
Confidence 48999993 7999999999999999998886654 1 12111 2224 4677899999999999887654
Q ss_pred C----hh------hhhhhhcCccchhhcCCCCCEEEEcCC
Q 044797 68 H----VD------QIDDIFFGHEGVLKGLQKGAVIILQST 97 (173)
Q Consensus 68 ~----~~------~~~~v~~~~~~i~~~l~~g~~ii~~st 97 (173)
- .. .+.. +.-..++.+..+++.+|+.+..
T Consensus 83 ~s~~~~e~~~~~~~~~~-y~v~~~~m~~a~~~~i~mH~LP 121 (158)
T PF00185_consen 83 QSMGDKERFKRLEKFKP-YQVTEELMERAKPDAIFMHPLP 121 (158)
T ss_dssp SCTTSGGHHHHHHHHGG-GSBSHHHHHTSSTT-EEEESSS
T ss_pred ccccchHHHHHHHHhcC-CccCHHHHHhcCCCcEEEeCCC
Confidence 2 10 1111 1111245556778888888865
No 466
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.48 E-value=0.0044 Score=50.37 Aligned_cols=35 Identities=14% Similarity=0.166 Sum_probs=32.6
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHC--CCeEEEEcCCh
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRS--GYKVQAFEISD 35 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~--g~~V~~~d~~~ 35 (173)
|+.+|.|||.|-+|.++|..|.+. |++|+++|+.+
T Consensus 1 ~~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 1 AMYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred CCccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 778999999999999999999998 99999999874
No 467
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=96.48 E-value=0.041 Score=43.48 Aligned_cols=87 Identities=13% Similarity=0.153 Sum_probs=59.9
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCcee-c----Chhhh---hcCCCEEEEeccChhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRS-A----SPMDA---GKDVSALVVVISHVDQIDD 74 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~-~----~~~~~---~~~~dvii~~v~~~~~~~~ 74 (173)
.+|.|.|.|.+|..+++.+...|.+|++.++++++.+.+.+.|+... + +..+. ....|+++.++..+..+..
T Consensus 165 ~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~ 244 (333)
T cd08296 165 DLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNAKAISA 244 (333)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCchHHHHH
Confidence 36888899999999999999999999999999988888877775321 1 11111 2357888887643444443
Q ss_pred hhcCccchhhcCCCCCEEEEcC
Q 044797 75 IFFGHEGVLKGLQKGAVIILQS 96 (173)
Q Consensus 75 v~~~~~~i~~~l~~g~~ii~~s 96 (173)
.+ ..++++..++..+
T Consensus 245 ~~-------~~l~~~G~~v~~g 259 (333)
T cd08296 245 LV-------GGLAPRGKLLILG 259 (333)
T ss_pred HH-------HHcccCCEEEEEe
Confidence 33 4556666666654
No 468
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.47 E-value=0.0076 Score=48.71 Aligned_cols=88 Identities=17% Similarity=0.203 Sum_probs=50.2
Q ss_pred CeEEEEeC-ChhhHHHHHHHH-HCCCe---EEEEcCCh--HHHHHHHHcCCceec-ChhhhhcCCCEEEEeccChhhhhh
Q 044797 3 SKVGFVGL-DEYSVDMAASLI-RSGYK---VQAFEISD--PLVDKFFMLGGIRSA-SPMDAGKDVSALVVVISHVDQIDD 74 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~-~~g~~---V~~~d~~~--~~~~~~~~~g~~~~~-~~~~~~~~~dvii~~v~~~~~~~~ 74 (173)
++|+|+|+ |..|.-+.+.++ ...++ +..+.... .+...+......... ...+.++++|++|+|+|.. ..++
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~~~~~~~Divf~a~~~~-~s~~ 80 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDIDALKKLDIIITCQGGD-YTNE 80 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCChhHhcCCCEEEECCCHH-HHHH
Confidence 79999986 999999998554 45565 55543321 111112211112221 1123457899999999854 3344
Q ss_pred hhcCccchhhcCCCC--CEEEEcCC
Q 044797 75 IFFGHEGVLKGLQKG--AVIILQST 97 (173)
Q Consensus 75 v~~~~~~i~~~l~~g--~~ii~~st 97 (173)
+. .. ....| ..+||.|+
T Consensus 81 ~~---~~---~~~aG~~~~VID~Ss 99 (369)
T PRK06598 81 VY---PK---LRAAGWQGYWIDAAS 99 (369)
T ss_pred HH---HH---HHhCCCCeEEEECCh
Confidence 43 11 23457 56888874
No 469
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=96.47 E-value=0.043 Score=44.10 Aligned_cols=87 Identities=15% Similarity=0.214 Sum_probs=59.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCceecC-------hhhhh-----cCCCEEEEeccCh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRSAS-------PMDAG-----KDVSALVVVISHV 69 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~~~-------~~~~~-----~~~dvii~~v~~~ 69 (173)
.+|.|.|.|.+|...++.+...|. +|++.++++++.+.+.+.|+...-+ ..+.+ ...|+++-++..+
T Consensus 189 ~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~G~~ 268 (369)
T cd08301 189 STVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECTGNI 268 (369)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECCCCh
Confidence 468899999999999999999998 7999999999998888877542111 11111 1479999988654
Q ss_pred hhhhhhhcCccchhhcCCCC-CEEEEcC
Q 044797 70 DQIDDIFFGHEGVLKGLQKG-AVIILQS 96 (173)
Q Consensus 70 ~~~~~v~~~~~~i~~~l~~g-~~ii~~s 96 (173)
..+...+ ..++++ ..++..+
T Consensus 269 ~~~~~~~-------~~~~~~~g~~v~~g 289 (369)
T cd08301 269 DAMISAF-------ECVHDGWGVTVLLG 289 (369)
T ss_pred HHHHHHH-------HHhhcCCCEEEEEC
Confidence 4444443 344553 4555443
No 470
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.47 E-value=0.012 Score=53.29 Aligned_cols=65 Identities=25% Similarity=0.254 Sum_probs=48.5
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH---------------------HHHHHHHcCCcee--------cChh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP---------------------LVDKFFMLGGIRS--------ASPM 53 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~---------------------~~~~~~~~g~~~~--------~~~~ 53 (173)
+||+|||.|.-|.+.|..|.+.||+|++|++.+. .++.+.+.|++.. -+.+
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit~~ 386 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATLE 386 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEeHH
Confidence 6899999999999999999999999999997541 1233444565421 1345
Q ss_pred hhhc-CCCEEEEecc
Q 044797 54 DAGK-DVSALVVVIS 67 (173)
Q Consensus 54 ~~~~-~~dvii~~v~ 67 (173)
++.+ +.|.||+++-
T Consensus 387 ~l~~~~yDAV~LAtG 401 (944)
T PRK12779 387 DLKAAGFWKIFVGTG 401 (944)
T ss_pred HhccccCCEEEEeCC
Confidence 5544 6899999975
No 471
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.45 E-value=0.018 Score=45.10 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=54.9
Q ss_pred CeEEEEeC-ChhhHHHHHHHHHC----CCeEEEEcCChHHHHHHHHcCCceecChhhhhcCCCEEEEeccChhhhhhhhc
Q 044797 3 SKVGFVGL-DEYSVDMAASLIRS----GYKVQAFEISDPLVDKFFMLGGIRSASPMDAGKDVSALVVVISHVDQIDDIFF 77 (173)
Q Consensus 3 ~~IgiiG~-G~mG~~ia~~l~~~----g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~dvii~~v~~~~~~~~v~~ 77 (173)
+++.|||- ..+|.+++..|.+. +..|+++.... .++.+..++||+||+++.-+.-+.
T Consensus 158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvGkp~~i~---- 219 (293)
T PRK14185 158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALGQPEFVK---- 219 (293)
T ss_pred CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccCCcCccC----
Confidence 57888864 46799999999887 57888876432 356777889999999998554322
Q ss_pred CccchhhcCCCCCEEEEcCCC
Q 044797 78 GHEGVLKGLQKGAVIILQSTI 98 (173)
Q Consensus 78 ~~~~i~~~l~~g~~ii~~st~ 98 (173)
.+.+++|+++||.+..
T Consensus 220 -----~~~vk~gavVIDvGin 235 (293)
T PRK14185 220 -----ADMVKEGAVVIDVGTT 235 (293)
T ss_pred -----HHHcCCCCEEEEecCc
Confidence 2457899999999764
No 472
>COG3804 Uncharacterized conserved protein related to dihydrodipicolinate reductase [Function unknown]
Probab=96.45 E-value=0.014 Score=45.15 Aligned_cols=107 Identities=17% Similarity=0.082 Sum_probs=65.9
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHC-CCeEE-EEcCChHHHHH-HHH------cCCceecChhhhh-cCCCEEEEeccChh
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRS-GYKVQ-AFEISDPLVDK-FFM------LGGIRSASPMDAG-KDVSALVVVISHVD 70 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~-g~~V~-~~d~~~~~~~~-~~~------~g~~~~~~~~~~~-~~~dvii~~v~~~~ 70 (173)
|.+++-+.|.|++|....+.+.++ +++++ +|++++++..+ +.+ .|+...++.+..+ -.+|-++...-.+.
T Consensus 1 m~~~vvqyGtG~vGv~air~l~akpe~elvgawv~s~ak~Gkdlgelagl~dlgV~a~~~~~avlAtl~~~~~y~~~~~~ 80 (350)
T COG3804 1 MSLRVVQYGTGSVGVAAIRGLLAKPELELVGAWVHSAAKSGKDLGELAGLPDLGVIATNSIDAVLATLADAVIYAPLLPS 80 (350)
T ss_pred CCceeEEeccchHHHHHHHHHHcCCCCceEEEEecCcccccccHHHhcCCCCceeEeecccccceeccccceeeecccch
Confidence 788999999999999887777765 88865 89999887643 222 2455555554433 34444444433231
Q ss_pred hhhhhhcCccchhhcCCCCCEEEEcCC-------CCHHHHHHHHHHHhcCCc
Q 044797 71 QIDDIFFGHEGVLKGLQKGAVIILQST-------ILPSHMQKLEKTFTGNLT 115 (173)
Q Consensus 71 ~~~~v~~~~~~i~~~l~~g~~ii~~st-------~~~~~~~~l~~~l~~~g~ 115 (173)
++ ++...|+.|.-+|..+. ..|+..++..+...+.|.
T Consensus 81 -~~-------~y~rlL~aGiNVv~~g~~l~yPw~~~PelaeKpl~lAaraGn 124 (350)
T COG3804 81 -VD-------EYARLLRAGINVVTPGPVLQYPWFYPPELAEKPLELAARAGN 124 (350)
T ss_pred -HH-------HHHHHHHcCCceeccCccccCCCcCChHHhhchHHHHHhcCC
Confidence 22 33445667777776532 345556666666555555
No 473
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=96.45 E-value=0.037 Score=44.05 Aligned_cols=87 Identities=14% Similarity=0.105 Sum_probs=58.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHHHcCCcee-c----Chhh---hh--cCCC-EEEEeccChh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFFMLGGIRS-A----SPMD---AG--KDVS-ALVVVISHVD 70 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~~-~----~~~~---~~--~~~d-vii~~v~~~~ 70 (173)
.+|.|.|+|.+|...++.+...|.+ |++.++++++.+.+.+.|+... + +.++ .. ...| +++-|+..+.
T Consensus 162 ~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G~~~ 241 (347)
T PRK10309 162 KNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAGVPQ 241 (347)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCCCHH
Confidence 4788999999999999999999987 6889999999888777675321 1 1111 11 1356 7888887544
Q ss_pred hhhhhhcCccchhhcCCCCCEEEEcC
Q 044797 71 QIDDIFFGHEGVLKGLQKGAVIILQS 96 (173)
Q Consensus 71 ~~~~v~~~~~~i~~~l~~g~~ii~~s 96 (173)
.+...+ ..++++..++..+
T Consensus 242 ~~~~~~-------~~l~~~G~iv~~G 260 (347)
T PRK10309 242 TVELAI-------EIAGPRAQLALVG 260 (347)
T ss_pred HHHHHH-------HHhhcCCEEEEEc
Confidence 444333 4456666665554
No 474
>PRK07890 short chain dehydrogenase; Provisional
Probab=96.44 E-value=0.034 Score=42.03 Aligned_cols=40 Identities=15% Similarity=0.008 Sum_probs=33.2
Q ss_pred CeEEEE-eCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797 3 SKVGFV-GLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF 42 (173)
Q Consensus 3 ~~Igii-G~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~ 42 (173)
+++.|. |.|.+|.++++.|++.|++|.+.+|++++.+.+.
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 46 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVA 46 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 456666 5699999999999999999999999987765543
No 475
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=96.43 E-value=0.046 Score=43.92 Aligned_cols=74 Identities=14% Similarity=0.170 Sum_probs=53.2
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHcCCcee-c--C----hhhhh-----cCCCEEEEeccCh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFMLGGIRS-A--S----PMDAG-----KDVSALVVVISHV 69 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~g~~~~-~--~----~~~~~-----~~~dvii~~v~~~ 69 (173)
.+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+... + + ..+.+ ...|+++-++..+
T Consensus 186 ~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~~g~~ 265 (365)
T cd08277 186 STVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFECTGNA 265 (365)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEECCCCh
Confidence 478889999999999999999998 69999999999888877775321 1 1 11111 2589999998754
Q ss_pred hhhhhhh
Q 044797 70 DQIDDIF 76 (173)
Q Consensus 70 ~~~~~v~ 76 (173)
..+...+
T Consensus 266 ~~~~~~~ 272 (365)
T cd08277 266 DLMNEAL 272 (365)
T ss_pred HHHHHHH
Confidence 4444443
No 476
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=96.41 E-value=0.031 Score=43.71 Aligned_cols=107 Identities=20% Similarity=0.137 Sum_probs=61.8
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHHc--------CCceecChhhhhc--CCCEEEEeccChhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFML--------GGIRSASPMDAGK--DVSALVVVISHVDQ 71 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~~--------g~~~~~~~~~~~~--~~dvii~~v~~~~~ 71 (173)
.+|.|+|+|.+|..+|++|..+|. .++++|.+.-....+..+ |-..+....+.++ +.++-+...... .
T Consensus 20 s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~-~ 98 (286)
T cd01491 20 SNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP-L 98 (286)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc-C
Confidence 689999999999999999999996 689998764333222111 1111111111111 344444444322 1
Q ss_pred hhhhhcCccchhhcCCCCCEEEEcCCCCHHHHHHHHHHHhcCCceeeece
Q 044797 72 IDDIFFGHEGVLKGLQKGAVIILQSTILPSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
..+. +.+-++++++.. .+.....+.+..+++++.++...
T Consensus 99 ~~~~----------l~~fdvVV~~~~-~~~~~~~in~~c~~~~ipfI~a~ 137 (286)
T cd01491 99 TTDE----------LLKFQVVVLTDA-SLEDQLKINEFCHSPGIKFISAD 137 (286)
T ss_pred CHHH----------HhcCCEEEEecC-CHHHHHHHHHHHHHcCCEEEEEe
Confidence 1111 122346666643 56666778888888888776543
No 477
>PLN02650 dihydroflavonol-4-reductase
Probab=96.40 E-value=0.013 Score=46.78 Aligned_cols=65 Identities=23% Similarity=0.160 Sum_probs=45.8
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH---c-C----C-------ceecChhhhhcCCCEEEEec
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM---L-G----G-------IRSASPMDAGKDVSALVVVI 66 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~---~-g----~-------~~~~~~~~~~~~~dvii~~v 66 (173)
++|.|.| .|.+|+.+++.|++.|++|++.+|++++.+.+.. . + + .-..+..++++++|.||-+.
T Consensus 6 k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH~A 85 (351)
T PLN02650 6 ETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFHVA 85 (351)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEEeC
Confidence 5788886 6999999999999999999988887655443211 0 1 1 11123456677899998775
Q ss_pred c
Q 044797 67 S 67 (173)
Q Consensus 67 ~ 67 (173)
.
T Consensus 86 ~ 86 (351)
T PLN02650 86 T 86 (351)
T ss_pred C
Confidence 3
No 478
>PRK12320 hypothetical protein; Provisional
Probab=96.39 E-value=0.021 Score=49.98 Aligned_cols=62 Identities=8% Similarity=-0.023 Sum_probs=44.9
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCce-----e-cChhhhhcCCCEEEEecc
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIR-----S-ASPMDAGKDVSALVVVIS 67 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~-----~-~~~~~~~~~~dvii~~v~ 67 (173)
|||.|.| +|.+|+.+++.|.+.|++|++.++++.... ..+++. . ....+++.++|+||.+.+
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~~---~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa 69 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDAL---DPRVDYVCASLRNPVLQELAGEADAVIHLAP 69 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhcc---cCCceEEEccCCCHHHHHHhcCCCEEEEcCc
Confidence 4899997 799999999999999999999998765321 112111 1 123445678999999876
No 479
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=96.39 E-value=0.032 Score=41.86 Aligned_cols=38 Identities=16% Similarity=0.111 Sum_probs=32.9
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHH
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDK 40 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~ 40 (173)
++|.|.| .|.+|..+++.|+++|++|++.+|++++...
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~ 45 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAA 45 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 5787886 7999999999999999999999999766544
No 480
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.39 E-value=0.017 Score=47.93 Aligned_cols=65 Identities=15% Similarity=0.100 Sum_probs=47.7
Q ss_pred CeEEEEeCChhhH-HHHHHHHHC-----CCeEEEEcCChHHHHHHHH--------cC----CceecChhhhhcCCCEEEE
Q 044797 3 SKVGFVGLDEYSV-DMAASLIRS-----GYKVQAFEISDPLVDKFFM--------LG----GIRSASPMDAGKDVSALVV 64 (173)
Q Consensus 3 ~~IgiiG~G~mG~-~ia~~l~~~-----g~~V~~~d~~~~~~~~~~~--------~g----~~~~~~~~~~~~~~dvii~ 64 (173)
|||+|||.|..=+ .+.+.|... +-+|+.+|.++++++.... .| +..+.+.++++++||+||+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~ 80 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA 80 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence 5999999998622 234555433 3589999999988865322 23 3567889999999999999
Q ss_pred ecc
Q 044797 65 VIS 67 (173)
Q Consensus 65 ~v~ 67 (173)
...
T Consensus 81 ~ir 83 (437)
T cd05298 81 QIR 83 (437)
T ss_pred Eee
Confidence 875
No 481
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=96.39 E-value=0.046 Score=41.63 Aligned_cols=41 Identities=12% Similarity=0.115 Sum_probs=33.8
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM 43 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~ 43 (173)
+++.|.| .|.+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQ 48 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 3455554 5889999999999999999999999888776654
No 482
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=96.39 E-value=0.0055 Score=49.77 Aligned_cols=36 Identities=17% Similarity=0.224 Sum_probs=33.6
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP 36 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~ 36 (173)
|..+|.|||.|..|..+|..|.+.|++|.++++.+.
T Consensus 1 ~~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred CcceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 678999999999999999999999999999998864
No 483
>PRK05866 short chain dehydrogenase; Provisional
Probab=96.38 E-value=0.041 Score=42.93 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=34.2
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFM 43 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~ 43 (173)
+++.|.| .|.+|..+++.|++.|++|.+.+|++++.+.+.+
T Consensus 41 k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~ 82 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVAD 82 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 4566665 5999999999999999999999999887765543
No 484
>PRK08219 short chain dehydrogenase; Provisional
Probab=96.38 E-value=0.013 Score=43.38 Aligned_cols=64 Identities=13% Similarity=0.033 Sum_probs=43.9
Q ss_pred CCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHc--CCce-------ecChhhhhc---CCCEEEEec
Q 044797 2 ASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFML--GGIR-------SASPMDAGK---DVSALVVVI 66 (173)
Q Consensus 2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~--g~~~-------~~~~~~~~~---~~dvii~~v 66 (173)
++++.|.| .|.+|..+++.|++. ++|++.+|++++.+.+.+. ++.. ..+..++++ ..|.||.+.
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~a 79 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERLDELAAELPGATPFPVDLTDPEAIAAAVEQLGRLDVLVHNA 79 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHHHHHHHHhccceEEecCCCCHHHHHHHHHhcCCCCEEEECC
Confidence 45677775 699999999999999 9999999998876655432 2211 112223333 478888775
No 485
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.37 E-value=0.0057 Score=47.58 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=43.5
Q ss_pred eEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH---H-c--CCceecChhhhhcCC-CEEEEec
Q 044797 4 KVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF---M-L--GGIRSASPMDAGKDV-SALVVVI 66 (173)
Q Consensus 4 ~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~---~-~--g~~~~~~~~~~~~~~-dvii~~v 66 (173)
+|.|.| .|.+|+.+++.|.+.|++|.+.+|.+.+..... + . .........+..+.. |.|+.+.
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~d~vih~a 72 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDELAKGVPDAVIHLA 72 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccccccceeeecccchHHHHHHHhcCCCEEEEcc
Confidence 588898 599999999999999999999999876654332 0 0 111112233445555 8888765
No 486
>PRK07411 hypothetical protein; Validated
Probab=96.37 E-value=0.027 Score=46.07 Aligned_cols=33 Identities=12% Similarity=0.197 Sum_probs=29.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCCh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISD 35 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~ 35 (173)
.+|.|||+|.+|+.++++|...|. +++++|.+.
T Consensus 39 ~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ 72 (390)
T PRK07411 39 ASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV 72 (390)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 589999999999999999999996 688888753
No 487
>PLN02686 cinnamoyl-CoA reductase
Probab=96.37 E-value=0.012 Score=47.50 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=32.5
Q ss_pred CCeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHH
Q 044797 2 ASKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKF 41 (173)
Q Consensus 2 ~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 41 (173)
+++|.|.| .|.+|+.+++.|++.|++|.+..|+.++.+.+
T Consensus 53 ~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~~~l 93 (367)
T PLN02686 53 ARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDKEKL 93 (367)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 36787785 59999999999999999999888876655443
No 488
>PRK06139 short chain dehydrogenase; Provisional
Probab=96.35 E-value=0.049 Score=43.42 Aligned_cols=39 Identities=13% Similarity=0.123 Sum_probs=33.0
Q ss_pred eEEEEeC-ChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797 4 KVGFVGL-DEYSVDMAASLIRSGYKVQAFEISDPLVDKFF 42 (173)
Q Consensus 4 ~IgiiG~-G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~ 42 (173)
++.|.|+ |.+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 9 ~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~ 48 (330)
T PRK06139 9 VVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVA 48 (330)
T ss_pred EEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 4556665 89999999999999999999999998876554
No 489
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=96.35 E-value=0.0055 Score=48.28 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=29.7
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP 36 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~ 36 (173)
.+|.|||+|.-|..+|..|.++|++|.+++++++
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 4799999999999999999999999999998764
No 490
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=96.34 E-value=0.0084 Score=47.93 Aligned_cols=33 Identities=9% Similarity=0.012 Sum_probs=29.9
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISD 35 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~ 35 (173)
+||.|.| +|.+|+.+++.|++.|++|+++||..
T Consensus 16 ~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~ 49 (348)
T PRK15181 16 KRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFS 49 (348)
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 6898996 59999999999999999999999854
No 491
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=96.34 E-value=0.041 Score=44.24 Aligned_cols=87 Identities=17% Similarity=0.120 Sum_probs=57.0
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHH-HHHcCCceec---C---hhhhhcCCCEEEEeccChhhhhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDK-FFMLGGIRSA---S---PMDAGKDVSALVVVISHVDQIDDI 75 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~-~~~~g~~~~~---~---~~~~~~~~dvii~~v~~~~~~~~v 75 (173)
.+|.|.|+|.+|...++.+...|.+|++.+.++++... +.+.|+...- + ..+.....|++|-++..+..+.+.
T Consensus 185 ~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~ 264 (360)
T PLN02586 185 KHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVHALGPL 264 (360)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHHHHHHH
Confidence 36888999999999999999999998888777665443 3455653221 1 112223579999988754444333
Q ss_pred hcCccchhhcCCCCCEEEEcC
Q 044797 76 FFGHEGVLKGLQKGAVIILQS 96 (173)
Q Consensus 76 ~~~~~~i~~~l~~g~~ii~~s 96 (173)
+ ..++++..++..+
T Consensus 265 ~-------~~l~~~G~iv~vG 278 (360)
T PLN02586 265 L-------GLLKVNGKLITLG 278 (360)
T ss_pred H-------HHhcCCcEEEEeC
Confidence 3 4456666666554
No 492
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.34 E-value=0.0056 Score=49.85 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=33.1
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChH
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDP 36 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~ 36 (173)
|..||.|||.|.-|..+|..|.++|++|.++++.++
T Consensus 1 ~~~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~ 36 (400)
T PRK06475 1 TRGSPLIAGAGVAGLSAALELAARGWAVTIIEKAQE 36 (400)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 567999999999999999999999999999998764
No 493
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=96.33 E-value=0.0056 Score=49.87 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=32.4
Q ss_pred CCCeEEEEeCChhhHHHHHHHHHCCCeEEEEcCCh
Q 044797 1 MASKVGFVGLDEYSVDMAASLIRSGYKVQAFEISD 35 (173)
Q Consensus 1 m~~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~ 35 (173)
|..+|.|||.|..|.++|..|.++|++|+++++.+
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CCccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 56689999999999999999999999999999875
No 494
>PRK12939 short chain dehydrogenase; Provisional
Probab=96.30 E-value=0.048 Score=40.93 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=33.1
Q ss_pred CeEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHH
Q 044797 3 SKVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKF 41 (173)
Q Consensus 3 ~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~ 41 (173)
+++.|.| .|.+|..+++.|.+.|++|.+.+|++++.+.+
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~ 47 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEAREL 47 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 5677776 59999999999999999999999998876554
No 495
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=96.30 E-value=0.046 Score=42.99 Aligned_cols=87 Identities=13% Similarity=0.158 Sum_probs=58.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCe-EEEEcCChHHHHHHHHcCCce-ecC----hh--h--hhcCCCEEEEeccChhhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYK-VQAFEISDPLVDKFFMLGGIR-SAS----PM--D--AGKDVSALVVVISHVDQI 72 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~-V~~~d~~~~~~~~~~~~g~~~-~~~----~~--~--~~~~~dvii~~v~~~~~~ 72 (173)
.+|.|+|.|.+|..+++.+...|.+ |.+.++++++.+.+.+.|+.. ... .. . .-+..|+++-++..+...
T Consensus 161 ~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~~~~ 240 (334)
T cd08234 161 DSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVPKTL 240 (334)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCChHHH
Confidence 4788889999999999999999987 888999999888776666421 111 10 0 124589999988643333
Q ss_pred hhhhcCccchhhcCCCCCEEEEcC
Q 044797 73 DDIFFGHEGVLKGLQKGAVIILQS 96 (173)
Q Consensus 73 ~~v~~~~~~i~~~l~~g~~ii~~s 96 (173)
...+ ..++++..++..+
T Consensus 241 ~~~~-------~~l~~~G~~v~~g 257 (334)
T cd08234 241 EQAI-------EYARRGGTVLVFG 257 (334)
T ss_pred HHHH-------HHHhcCCEEEEEe
Confidence 3332 3455555666554
No 496
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=96.30 E-value=0.048 Score=42.82 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=59.3
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCCeEEEEcCChHHHHHHHHcCCceecChhh-hhcCCCEEEEeccChhhhhhhhcCccc
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGYKVQAFEISDPLVDKFFMLGGIRSASPMD-AGKDVSALVVVISHVDQIDDIFFGHEG 81 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~~~g~~~~~~~~~-~~~~~dvii~~v~~~~~~~~v~~~~~~ 81 (173)
.++.|.|+|.+|..+++.+...|.+|++.++++++.+.+.+.|+....+..+ .-+..|+++.+.+.....+.++
T Consensus 169 ~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vD~vi~~~~~~~~~~~~~----- 243 (329)
T cd08298 169 QRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAIIFAPVGALVPAAL----- 243 (329)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCccCCCcccEEEEcCCcHHHHHHHH-----
Confidence 3688889999999999999999999999999888888776667643222221 1235788888765443443333
Q ss_pred hhhcCCCCCEEEEcC
Q 044797 82 VLKGLQKGAVIILQS 96 (173)
Q Consensus 82 i~~~l~~g~~ii~~s 96 (173)
..++++..++..+
T Consensus 244 --~~l~~~G~~v~~g 256 (329)
T cd08298 244 --RAVKKGGRVVLAG 256 (329)
T ss_pred --HHhhcCCEEEEEc
Confidence 4555555555543
No 497
>PRK14851 hypothetical protein; Provisional
Probab=96.29 E-value=0.027 Score=49.20 Aligned_cols=112 Identities=11% Similarity=-0.011 Sum_probs=63.4
Q ss_pred CeEEEEeCChhhHHHHHHHHHCCC-eEEEEcCChHHHHHHHH--------cCCceecChhhhhc--CCCEEEEeccChhh
Q 044797 3 SKVGFVGLDEYSVDMAASLIRSGY-KVQAFEISDPLVDKFFM--------LGGIRSASPMDAGK--DVSALVVVISHVDQ 71 (173)
Q Consensus 3 ~~IgiiG~G~mG~~ia~~l~~~g~-~V~~~d~~~~~~~~~~~--------~g~~~~~~~~~~~~--~~dvii~~v~~~~~ 71 (173)
.+|+|+|+|.+|+.++..|...|. +++++|.+.=....+.. .|-..+.-..+.+. +.++-|.+.+..-.
T Consensus 44 ~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~i~ 123 (679)
T PRK14851 44 AKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAGIN 123 (679)
T ss_pred CeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 589999999999999999999996 67778765322111111 12111111122221 34555555442211
Q ss_pred hhhhhcCccchhhcCCCCCEEEEcCCCC-HHHHHHHHHHHhcCCceeeece
Q 044797 72 IDDIFFGHEGVLKGLQKGAVIILQSTIL-PSHMQKLEKTFTGNLTFYILER 121 (173)
Q Consensus 72 ~~~v~~~~~~i~~~l~~g~~ii~~st~~-~~~~~~l~~~l~~~g~~~v~~~ 121 (173)
.+ .+.+.+..-++|+|+.... ......+.+....+++.++..+
T Consensus 124 -~~------n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g 167 (679)
T PRK14851 124 -AD------NMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAG 167 (679)
T ss_pred -hH------HHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 11 1122334457888887542 3344567777777888887654
No 498
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=96.28 E-value=0.057 Score=40.60 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=32.3
Q ss_pred CCCeEEEEe-CChhhHHHHHHHHHCCCeEEEE-cCChHHHHHH
Q 044797 1 MASKVGFVG-LDEYSVDMAASLIRSGYKVQAF-EISDPLVDKF 41 (173)
Q Consensus 1 m~~~IgiiG-~G~mG~~ia~~l~~~g~~V~~~-d~~~~~~~~~ 41 (173)
|+++|.|.| .|.+|..+++.|++.|++|.+. .|++++.+.+
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~ 43 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEET 43 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence 778888885 5789999999999999998765 5666655443
No 499
>PRK07109 short chain dehydrogenase; Provisional
Probab=96.28 E-value=0.055 Score=43.12 Aligned_cols=39 Identities=18% Similarity=0.153 Sum_probs=32.7
Q ss_pred eEEEEe-CChhhHHHHHHHHHCCCeEEEEcCChHHHHHHH
Q 044797 4 KVGFVG-LDEYSVDMAASLIRSGYKVQAFEISDPLVDKFF 42 (173)
Q Consensus 4 ~IgiiG-~G~mG~~ia~~l~~~g~~V~~~d~~~~~~~~~~ 42 (173)
+|.|.| .|.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 10 ~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~ 49 (334)
T PRK07109 10 VVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALA 49 (334)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 455665 599999999999999999999999988776543
No 500
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=96.27 E-value=0.021 Score=47.06 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=47.2
Q ss_pred CeEEEEeCChhhHH-HHHHHHHC-----CCeEEEEcCC-hHHHHHHHH--------cC----CceecChhhhhcCCCEEE
Q 044797 3 SKVGFVGLDEYSVD-MAASLIRS-----GYKVQAFEIS-DPLVDKFFM--------LG----GIRSASPMDAGKDVSALV 63 (173)
Q Consensus 3 ~~IgiiG~G~mG~~-ia~~l~~~-----g~~V~~~d~~-~~~~~~~~~--------~g----~~~~~~~~~~~~~~dvii 63 (173)
+||.|||.|..-++ +.+.|+.. +-++..+|.+ +++++.... .+ +..+.+.+++++++|+||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi 80 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 59999999997543 34555542 2589999999 888754221 23 345778999999999999
Q ss_pred Eecc
Q 044797 64 VVIS 67 (173)
Q Consensus 64 ~~v~ 67 (173)
++..
T Consensus 81 ~~~~ 84 (419)
T cd05296 81 TQIR 84 (419)
T ss_pred EEEe
Confidence 9874
Done!