Your job contains 1 sequence.
>044798
MEEDEDRLLLSSLGVTSANPEDIERDVLAAAENVAGNSNETEESNEEKPHDKSESIDPSS
TSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASP
NDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKS
KEAQKPGKDRSKQQKTVSVDDDFDFDSALDAASAGFVETKRDELVRKGILTPFHKLKGFE
RCIQQPGPSNKQNVPDEQEARSNDPFSASVDRALRMMSEAAQARPSTKLLDPESLPKLDG
PTRPFQRLKTPFRMPQSEESEVEKKKRSKRKKKRPLPDKKWRKRIAREDTRLEENEDSRD
SLDMSSYEEEKQEDDEDSDNNEPPFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQR
AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVEL
LHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLI
TTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKL
SELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYL
LRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRK
ICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILES
FLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFD
PDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQR
RFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVNVVGDQKDKEDKQKHKKAASANAD
DAVGDKENNLEIGSSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDAIMNAHD
EEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGSTVG
SQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQFEVAS
SSANVARFADTRTSRSSKNASDVQPEILIRQICTFMQQRGGSSNSACIVEHFKDRVPSKD
LPLFKNLLKEIATLQKDPSGSRWVLKLNFVF
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 044798
(1231 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2054011 - symbol:CHR8 "chromatin remodeling 8"... 3546 0. 1
DICTYBASE|DDB_G0281441 - symbol:ercc6 "DNA excision repai... 1325 4.9e-196 5
ZFIN|ZDB-GENE-070228-1 - symbol:ercc6 "excision repair cr... 1312 2.1e-191 5
UNIPROTKB|E1BYA8 - symbol:ERCC6 "Uncharacterized protein"... 1287 1.8e-190 5
UNIPROTKB|E2QSK6 - symbol:ERCC6L "Uncharacterized protein... 1285 4.9e-187 4
UNIPROTKB|D3ZZZ1 - symbol:Ercc6 "Protein Ercc6" species:1... 1252 1.5e-185 4
CGD|CAL0000882 - symbol:orf19.607 species:5476 "Candida a... 1745 6.8e-184 2
UNIPROTKB|Q03468 - symbol:ERCC6 "DNA excision repair prot... 1275 9.0e-184 4
ASPGD|ASPL0000068126 - symbol:cshA species:162425 "Emeric... 1718 2.7e-180 2
POMBASE|SPCP25A2.02c - symbol:rhp26 "SNF2 family helicase... 1676 9.0e-180 3
SGD|S000003796 - symbol:RAD26 "Protein involved in transc... 1699 3.1e-177 2
UNIPROTKB|E1BFL2 - symbol:ERCC6 "Uncharacterized protein"... 1284 6.2e-167 4
UNIPROTKB|F1SDX0 - symbol:ERCC6 "Uncharacterized protein"... 1277 6.7e-163 3
UNIPROTKB|F5H493 - symbol:ERCC6 "DNA excision repair prot... 1237 6.0e-146 2
WB|WBGene00000803 - symbol:csb-1 species:6239 "Caenorhabd... 787 4.8e-82 3
TAIR|locus:2160811 - symbol:CHR24 "chromatin remodeling 2... 405 2.1e-78 3
ZFIN|ZDB-GENE-060531-56 - symbol:ercc6l "excision repair ... 412 4.4e-78 6
UNIPROTKB|I3LFY4 - symbol:ERCC6L "Uncharacterized protein... 413 3.5e-77 4
DICTYBASE|DDB_G0288873 - symbol:pich "polo-interacting ch... 468 6.1e-77 5
UNIPROTKB|A6QQR4 - symbol:ERCC6L "DNA excision repair pro... 406 2.6e-75 4
MGI|MGI:1923501 - symbol:Ercc6l2 "excision repair cross-c... 430 3.4e-75 2
UNIPROTKB|Q2NKX8 - symbol:ERCC6L "DNA excision repair pro... 403 3.6e-75 4
TAIR|locus:2024198 - symbol:SWI2 "switch 2" species:3702 ... 425 2.0e-73 3
RGD|1565734 - symbol:Ercc6l "excision repair cross-comple... 388 1.0e-72 4
UNIPROTKB|E2RGN3 - symbol:ERCC6L2 "Uncharacterized protei... 414 1.3e-72 2
UNIPROTKB|F1PQX1 - symbol:ERCC6L2 "Uncharacterized protei... 414 1.9e-72 2
UNIPROTKB|F1S4L1 - symbol:ERCC6L2 "Uncharacterized protei... 402 3.0e-72 4
UNIPROTKB|G5E5P9 - symbol:LOC789977 "Uncharacterized prot... 412 3.6e-72 3
UNIPROTKB|G4NCV5 - symbol:MGG_01012 "ISWI chromatin-remod... 619 4.2e-72 3
SGD|S000005831 - symbol:ISW2 "ATP-dependent DNA transloca... 604 6.5e-72 4
UNIPROTKB|I3LTT5 - symbol:SMARCA1 "Uncharacterized protei... 578 7.6e-72 3
UNIPROTKB|Q5T890 - symbol:RAD26L "Putative DNA repair and... 413 8.8e-72 3
UNIPROTKB|J9P3F5 - symbol:ERCC6L "Uncharacterized protein... 398 2.4e-71 4
MGI|MGI:2654144 - symbol:Ercc6l "excision repair cross-co... 385 6.8e-71 4
UNIPROTKB|F1NYG8 - symbol:F1NYG8 "Uncharacterized protein... 411 2.7e-70 4
ZFIN|ZDB-GENE-110411-274 - symbol:si:ch211-248d20.2 "si:c... 417 3.7e-70 6
GENEDB_PFALCIPARUM|PF11_0053 - symbol:PF11_0053 "PfSNF2L"... 616 5.6e-70 2
UNIPROTKB|Q8IIW0 - symbol:PF11_0053 "PfSNF2L" species:363... 616 5.6e-70 2
TAIR|locus:2087780 - symbol:PIE1 "PHOTOPERIOD-INDEPENDENT... 382 4.6e-69 4
UNIPROTKB|B5MDQ0 - symbol:ERCC6L "FLJ20105 protein, isofo... 403 1.1e-67 4
DICTYBASE|DDB_G0292948 - symbol:isw "CHR group protein" s... 582 3.1e-67 5
WB|WBGene00016868 - symbol:C52B9.8 species:6239 "Caenorha... 613 3.9e-67 4
UNIPROTKB|G4MNF9 - symbol:MGG_06945 "Helicase" species:24... 397 8.5e-67 5
CGD|CAL0005422 - symbol:ISW2 species:5476 "Candida albica... 588 1.2e-66 4
UNIPROTKB|Q5A310 - symbol:ISW2 "Putative uncharacterized ... 588 1.2e-66 4
WB|WBGene00002169 - symbol:isw-1 species:6239 "Caenorhabd... 570 2.7e-66 2
MGI|MGI:1935127 - symbol:Smarca1 "SWI/SNF related, matrix... 580 3.6e-66 4
WB|WBGene00004204 - symbol:swsn-4 species:6239 "Caenorhab... 626 3.9e-66 4
POMBASE|SPAC11E3.01c - symbol:swr1 "SNF2 family helicase ... 382 4.5e-66 4
ASPGD|ASPL0000041040 - symbol:AN9077 species:162425 "Emer... 349 5.7e-66 5
DICTYBASE|DDB_G0267638 - symbol:DDB_G0267638 "CHR group p... 378 1.6e-65 6
UNIPROTKB|Q6ZRS2 - symbol:SRCAP "Helicase SRCAP" species:... 382 1.7e-65 4
POMBASE|SPAC15A10.03c - symbol:rad54 "DNA-dependent ATPas... 378 2.2e-65 4
UNIPROTKB|F1P3Q4 - symbol:SMARCA1 "Uncharacterized protei... 578 3.0e-65 3
TAIR|locus:2182978 - symbol:CHR17 "chromatin remodeling f... 569 3.4e-65 3
MGI|MGI:1935129 - symbol:Smarca5 "SWI/SNF related, matrix... 571 3.5e-65 4
SGD|S000001388 - symbol:STH1 "ATPase component of the RSC... 606 4.8e-65 3
UNIPROTKB|Q9DG67 - symbol:RAD54B "DNA repair and recombin... 377 7.4e-65 3
CGD|CAL0003962 - symbol:orf19.239 species:5476 "Candida a... 595 7.5e-65 4
UNIPROTKB|K7GNV1 - symbol:SMARCA1 "Uncharacterized protei... 578 8.5e-65 4
UNIPROTKB|E2QVR5 - symbol:SMARCA1 "Uncharacterized protei... 566 9.1e-65 4
UNIPROTKB|E1C0M8 - symbol:SMARCA5 "Uncharacterized protei... 572 9.5e-65 3
CGD|CAL0002614 - symbol:orf19.4502 species:5476 "Candida ... 350 1.1e-64 4
UNIPROTKB|F1N052 - symbol:SMARCA5 "Uncharacterized protei... 572 1.1e-64 3
UNIPROTKB|E2QWV0 - symbol:SMARCA5 "Uncharacterized protei... 572 1.1e-64 3
UNIPROTKB|F1RRG9 - symbol:SMARCA5 "Uncharacterized protei... 572 1.1e-64 3
UNIPROTKB|E1C1A9 - symbol:CHD2 "Uncharacterized protein" ... 567 1.3e-64 3
RGD|1308832 - symbol:Smarca5 "SWI/SNF related, matrix ass... 571 1.4e-64 3
UNIPROTKB|O60264 - symbol:SMARCA5 "SWI/SNF-related matrix... 571 1.4e-64 3
RGD|1565642 - symbol:Srcap "Snf2-related CREBBP activator... 385 1.8e-64 5
DICTYBASE|DDB_G0271052 - symbol:snf2b "SNF2-related prote... 598 2.4e-64 4
SGD|S000002742 - symbol:SWR1 "Swi2/Snf2-related ATPase st... 355 2.5e-64 4
POMBASE|SPCC1620.14c - symbol:snf22 "ATP-dependent DNA he... 576 2.5e-64 4
UNIPROTKB|F1RG74 - symbol:SRCAP "Uncharacterized protein"... 385 2.7e-64 6
FB|FBgn0020306 - symbol:dom "domino" species:7227 "Drosop... 382 3.0e-64 5
UNIPROTKB|F1P5M3 - symbol:RAD54B "DNA repair and recombin... 375 3.3e-64 3
UNIPROTKB|F1NBD4 - symbol:RAD54L "DNA repair and recombin... 372 4.0e-64 3
UNIPROTKB|O12944 - symbol:RAD54L "DNA repair and recombin... 372 4.0e-64 3
UNIPROTKB|F1NX31 - symbol:RAD54L "DNA repair and recombin... 372 4.5e-64 3
UNIPROTKB|I3LQZ8 - symbol:CHD2 "Uncharacterized protein" ... 566 4.9e-64 2
WB|WBGene00007027 - symbol:ssl-1 species:6239 "Caenorhabd... 376 6.7e-64 4
UNIPROTKB|I3LRQ2 - symbol:CHD2 "Uncharacterized protein" ... 566 6.8e-64 3
UNIPROTKB|J9NX79 - symbol:CHD2 "Uncharacterized protein" ... 565 1.3e-63 2
FB|FBgn0011604 - symbol:Iswi "Imitation SWI" species:7227... 547 1.4e-63 3
UNIPROTKB|B4E0W6 - symbol:BTAF1 "TATA-binding protein-ass... 355 1.6e-63 4
ZFIN|ZDB-GENE-050419-256 - symbol:chd2 "chromodomain heli... 555 1.7e-63 3
ZFIN|ZDB-GENE-021125-1 - symbol:smarca5 "SWI/SNF related,... 564 2.0e-63 3
UNIPROTKB|D4AD08 - symbol:Chd2 "Chromodomain helicase DNA... 565 2.1e-63 2
UNIPROTKB|E1BAN8 - symbol:INO80 "Uncharacterized protein"... 351 2.7e-63 4
ZFIN|ZDB-GENE-070705-296 - symbol:si:dkey-148b12.1 "si:dk... 562 3.5e-63 3
UNIPROTKB|E1BC33 - symbol:LOC788113 "Uncharacterized prot... 385 6.0e-63 6
UNIPROTKB|F1SSV0 - symbol:INO80 "Uncharacterized protein"... 354 6.2e-63 5
ZFIN|ZDB-GENE-041014-72 - symbol:ino80 "INO80 homolog (S.... 350 7.1e-63 5
TAIR|locus:2150270 - symbol:CHR23 "chromatin remodeling 2... 563 7.4e-63 3
ASPGD|ASPL0000042729 - symbol:AN2278 species:162425 "Emer... 583 7.7e-63 4
UNIPROTKB|J9NSS6 - symbol:CHD2 "Uncharacterized protein" ... 565 8.8e-63 3
DICTYBASE|DDB_G0285205 - symbol:snf2a "SNF2-related prote... 544 1.1e-62 3
UNIPROTKB|F1PKX5 - symbol:INO80 "Uncharacterized protein"... 354 1.2e-62 5
POMBASE|SPAC1783.05 - symbol:hrp1 "ATP-dependent DNA heli... 566 2.2e-62 3
UNIPROTKB|O14647 - symbol:CHD2 "Chromodomain-helicase-DNA... 566 2.7e-62 3
WARNING: Descriptions of 468 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2054011 [details] [associations]
symbol:CHR8 "chromatin remodeling 8" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0010332 "response to
gamma radiation" evidence=IMP] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0010332 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AC005724 HOGENOM:HOG000170952 KO:K10841 IPI:IPI00524515
PIR:C84568 RefSeq:NP_179466.1 UniGene:At.39947
ProteinModelPortal:Q9ZV43 SMR:Q9ZV43 STRING:Q9ZV43 PaxDb:Q9ZV43
PRIDE:Q9ZV43 EnsemblPlants:AT2G18760.1 GeneID:816391
KEGG:ath:AT2G18760 TAIR:At2g18760 InParanoid:Q9ZV43 OMA:TETSNIF
PhylomeDB:Q9ZV43 ProtClustDB:CLSN2683061 ArrayExpress:Q9ZV43
Genevestigator:Q9ZV43 Uniprot:Q9ZV43
Length = 1187
Score = 3546 (1253.3 bits), Expect = 0., P = 0.
Identities = 726/1092 (66%), Positives = 836/1092 (76%)
Query: 60 STSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQAS 119
S+SQ +L NKLRAV+FEI AVASTV+++ ++ E+ ++D++S +Q
Sbjct: 57 SSSQNELLNKLRAVKFEIDAVASTVENVDEIAA------------EKGLKKDDESDLQGL 104
Query: 120 PNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRK 179
+ LQHAL DRL+SLKK K QL KEL+ S +H ++DLVKE+ KRK
Sbjct: 105 HSGSALQHALATDRLRSLKKRKIQLEKELTGLHGQSASSSADHGNLLRDLVKEKPSLKRK 164
Query: 180 SKEAQKPGKDRSKQQKTVSVXXXXXXXXXXXXXXXGFVETKRDELVRKGILTPFHKLKGF 239
KE +KP + K+ K VS GFVET+RDELVRKGILTPFHKL GF
Sbjct: 165 LKEIRKPSRRDGKKVKVVSFREDTDFDAVFDGASAGFVETERDELVRKGILTPFHKLDGF 224
Query: 240 ERCIQQPGPSNKQNVPDEQEARSNDPFSASVDRALRMMSEAAQARPSTKLLDPESLPKLD 299
ER +QQPGPSN +N+P E + + D S+ +DRA++ MS AA+ARP+TKLLD E LPKL+
Sbjct: 225 ERRLQQPGPSNSRNLP-EGDDENED--SSIIDRAVQSMSLAAKARPTTKLLDAEDLPKLE 281
Query: 300 GPTRPFQRLKTPFRMPQSEESEVEXXXXXXXXXXXXXXXXXX-XXXIAREDTRLEENEDS 358
PT PF+RL+ ++ P S ++E + I+RED+ L+ + D
Sbjct: 282 PPTAPFRRLRKLYKTPNSPDNEAKKRKAGKKSKKTRPLPEKKWRKRISREDSSLQGSGDG 341
Query: 359 RDSLDMSSYXXXXXXXXXXXXXXXPPFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHC 418
R L SS V LEGGL IPE IF LFDYQ+VGVQWLWELHC
Sbjct: 342 RRILTTSSCEEEELDDFDDADDNERSSVQLEGGLNIPECIFRKLFDYQRVGVQWLWELHC 401
Query: 419 QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHV 478
QRAGGIIGDEMGLGKTIQVLSFLG+LHFS MYKPSI++CPVTLLRQW+REA+KWYP FHV
Sbjct: 402 QRAGGIIGDEMGLGKTIQVLSFLGSLHFSKMYKPSIIICPVTLLRQWRREAQKWYPDFHV 461
Query: 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGL 538
E+LHDSAQD G K + K+S++D D E S DSD+E S+N KKWD L+NRVL SESGL
Sbjct: 462 EILHDSAQDSGHGKGQGKASESDYDSESSVDSDHEPK--SKNTKKWDSLLNRVLNSESGL 519
Query: 539 LITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQN 598
LITTYEQLRL GEKLL++EWGYAVLDEGHRIRNPN++I+LVCKQLQTVHRIIMTGAPIQN
Sbjct: 520 LITTYEQLRLQGEKLLNIEWGYAVLDEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQN 579
Query: 599 KLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMP 658
KL+ELWSLFDFVFPGKLGVLPVFEAEF+VPITVGGYANASPLQVSTAYRCAVVLRDLIMP
Sbjct: 580 KLTELWSLFDFVFPGKLGVLPVFEAEFSVPITVGGYANASPLQVSTAYRCAVVLRDLIMP 639
Query: 659 YLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVM 718
YLLRRMKADVNA L KKTEHVLFCSLT EQR+ YRAFLASSEVEQI DG+RNSLYGIDVM
Sbjct: 640 YLLRRMKADVNAHLTKKTEHVLFCSLTVEQRSTYRAFLASSEVEQIFDGNRNSLYGIDVM 699
Query: 719 RKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDIL 778
RKICNHPDLLERE S Q PDYGNPERS KMKVVA+VLKVWK QGHRVLLF+QTQQMLDIL
Sbjct: 700 RKICNHPDLLEREHSHQNPDYGNPERSGKMKVVAEVLKVWKQQGHRVLLFSQTQQMLDIL 759
Query: 779 ESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVII 838
ESFL+A+ Y YRRMDGLTPVKQRMALIDE+NNS D+F+F+LTTKVGGLGTNLTGANRVII
Sbjct: 760 ESFLVANEYSYRRMDGLTPVKQRMALIDEFNNSEDMFVFVLTTKVGGLGTNLTGANRVII 819
Query: 839 FDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ 898
FDPDWNPS D+QARERAWRIGQK+DVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ
Sbjct: 820 FDPDWNPSNDMQARERAWRIGQKKDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ 879
Query: 899 QRRFFKARNMKDLFTLNDDGNGG-STETSNIFSQLSEDVNVVGXXXXXXXXXXXXXAASA 957
QRRFFKAR+MKDLF L DDG+ STETSNIFSQL+E++N+VG A
Sbjct: 880 QRRFFKARDMKDLFILKDDGDSNASTETSNIFSQLAEEINIVGVQSDKKPESDTQLALHK 939
Query: 958 NADDAVGDKENNLEIGSSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDAIMN 1017
A+ GSS + E D G+ +DEETNILKSLFDA+GIHSA+NHDAIMN
Sbjct: 940 TAE------------GSSEQTDVEMTDKTGEAMDEETNILKSLFDAHGIHSAVNHDAIMN 987
Query: 1018 AHDEE-KMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKFG 1076
A+DEE KMRLE QASQVAQRAAEALRQSRMLRSR+ ISVPTWTG+SG AGAPSSVR++FG
Sbjct: 988 ANDEEEKMRLEHQASQVAQRAAEALRQSRMLRSRESISVPTWTGRSGCAGAPSSVRRRFG 1047
Query: 1077 STVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLER-Q 1135
STV S+L + + S+ K G AG S+GK SS+ELL RIRG++E A+G GLE+ Q
Sbjct: 1048 STVNSRLTQTGDKPSAIKNG----ISAGLSSGKAPSSAELLNRIRGSREQAIGVGLEQPQ 1103
Query: 1136 FEVASSSANVAR 1147
SSS + +R
Sbjct: 1104 SSFPSSSGSSSR 1115
Score = 710 (255.0 bits), Expect = 1.1e-113, Sum P(2) = 1.1e-113
Identities = 156/259 (60%), Positives = 189/259 (72%)
Query: 973 GSSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEE-KMRLEEQAS 1031
GSS + E D G+ +DEETNILKSLFDA+GIHSA+NHDAIMNA+DEE KMRLE QAS
Sbjct: 943 GSSEQTDVEMTDKTGEAMDEETNILKSLFDAHGIHSAVNHDAIMNANDEEEKMRLEHQAS 1002
Query: 1032 QVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGSTVGSQLIKPLEGSS 1091
QVAQRAAEALRQSRMLRSR+ ISVPTWTG+SG AGAPSSVR++FGSTV S+L + + S
Sbjct: 1003 QVAQRAAEALRQSRMLRSRESISVPTWTGRSGCAGAPSSVRRRFGSTVNSRLTQTGDKPS 1062
Query: 1092 SNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLER-QFEVASSSANVARFAD 1150
+ K G AG S+GK SS+ELL RIRG++E A+G GLE+ Q SSS
Sbjct: 1063 AIKNG----ISAGLSSGKAPSSAELLNRIRGSREQAIGVGLEQPQSSFPSSSG------- 1111
Query: 1151 TRTSRSSKNASDVQPEILIRQICTFMQQRGGSSNSACIVEHFKDRVPSKDLPLFKNLLKE 1210
SS +QPE+LIR+IC+F+QQ+GGS+++ IV HF+D V D LFKNLLKE
Sbjct: 1112 -----SSSRVGSLQPEVLIRKICSFVQQKGGSADTTSIVNHFRDIVSFNDKQLFKNLLKE 1166
Query: 1211 IATLQKDPSGSRWVLKLNF 1229
IATL+KD + S WVLK +
Sbjct: 1167 IATLEKDQNRSFWVLKSEY 1185
Score = 490 (177.5 bits), Expect = 1.1e-113, Sum P(2) = 1.1e-113
Identities = 123/319 (38%), Positives = 170/319 (53%)
Query: 1 MEEDEDRXXXXXXGVTSANPEDIERDVLAAAENVAGXXXXXXXXXXXKPHDKSESIDPSS 60
MEEDED+ GVTSANPED+E+ +L A + + E + S
Sbjct: 1 MEEDEDQFLLSSLGVTSANPEDLEQKILDEATKKPDNDEGGSVE---EKSTQLEGTNLLS 57
Query: 61 TSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASP 120
+SQ +L NKLRAV+FEI AVASTV+++ ++ E+ ++D++S +Q
Sbjct: 58 SSQNELLNKLRAVKFEIDAVASTVENVDEIAA------------EKGLKKDDESDLQGLH 105
Query: 121 NDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKS 180
+ LQHAL DRL+SLKK K QL KEL+ S +H ++DLVKE+ KRK
Sbjct: 106 SGSALQHALATDRLRSLKKRKIQLEKELTGLHGQSASSSADHGNLLRDLVKEKPSLKRKL 165
Query: 181 KEAQKPGKDRSKQQKTVSVXXXXXXXXXXXXXXXGFVETKRDELVRKGILTPFHKLKGFE 240
KE +KP + K+ K VS GFVET+RDELVRKGILTPFHKL GFE
Sbjct: 166 KEIRKPSRRDGKKVKVVSFREDTDFDAVFDGASAGFVETERDELVRKGILTPFHKLDGFE 225
Query: 241 RCIQQPGPSNKQNVPDEQEARSNDPFSASVDRALRMMSEAAQARPSTKLLDPESLPKLDG 300
R +QQPGPSN +N+P+ + + +++ + ++A D L
Sbjct: 226 RRLQQPGPSNSRNLPEGDDENEDSSIIDRAVQSMSLAAKARPTTKLLDAEDLPKLEPPTA 285
Query: 301 PTRPFQRL-KTPFRMPQSE 318
P R ++L KTP P +E
Sbjct: 286 PFRRLRKLYKTP-NSPDNE 303
>DICTYBASE|DDB_G0281441 [details] [associations]
symbol:ercc6 "DNA excision repair protein 6"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0281441 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000152_GR GO:GO:0003677
EMBL:AAFI02000041 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006289 GO:GO:0008094 KO:K10841
RefSeq:XP_640679.1 ProteinModelPortal:Q54TY2 STRING:Q54TY2
EnsemblProtists:DDB0232361 GeneID:8623063 KEGG:ddi:DDB_G0281441
InParanoid:Q54TY2 OMA:NIHKERW ProtClustDB:CLSZ2736745
Uniprot:Q54TY2
Length = 1655
Score = 1325 (471.5 bits), Expect = 4.9e-196, Sum P(5) = 4.9e-196
Identities = 251/433 (57%), Positives = 336/433 (77%)
Query: 508 HDSDYEGNLSSRNPKKWDLLINRVLRSESG-LLITTYEQLRLLGEKLLDVEWGYAVLDEG 566
H S G + + K+ D+ + ++ +E G +L+TT++ +R+ E LL W Y +LDEG
Sbjct: 876 HSSGSGGGGNDGSDKE-DI-VKKI--AEKGHILLTTFDSIRINQEILLKYHWEYVILDEG 931
Query: 567 HRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFA 626
H+IRNP+AEI+L CKQLQT HR+I++G+PIQNKL+ELWSLFDFVFPG+LG LP+F+++F+
Sbjct: 932 HKIRNPDAEITLSCKQLQTPHRVILSGSPIQNKLTELWSLFDFVFPGRLGTLPIFKSQFS 991
Query: 627 VPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTE 686
+PI+VGG+ANASP+QV AY+CAV LRDLI PY+LRR+K+DV LP K E VL C LT
Sbjct: 992 LPISVGGFANASPIQVQAAYKCAVALRDLISPYMLRRVKSDVLKSLPSKNEQVLMCPLTP 1051
Query: 687 EQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQI-P-DYGNPER 744
Q +Y FL S++++ +LDG RN+LYGID+++KICNHPD+L + S + P DYGN ER
Sbjct: 1052 FQEKLYLEFLDSNDIKSVLDGRRNALYGIDILKKICNHPDILHMDASDEDRPHDYGNIER 1111
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASG-YEYRRMDGLTPVKQRMA 803
S K+KVV +L +W QG +VLLF QT+QMLDI+E ++ S + Y RMDG T ++QR
Sbjct: 1112 SAKLKVVETILPLWFKQGDKVLLFCQTRQMLDIVEQYIRDSTQFNYLRMDGTTSIRQRQC 1171
Query: 804 LIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQD 863
L++++N +FIF+LTTKVGGLG NLTGANRVI+FDPDWNPSTD+QARER +RIGQK+
Sbjct: 1172 LVEQFNIDPSLFIFLLTTKVGGLGLNLTGANRVILFDPDWNPSTDMQARERVYRIGQKKA 1231
Query: 864 VTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGST 923
VT+YRLIT GTIEEK+YHRQIYK FLTNKILK+P+Q+RFFK+++ KDLFT + G +
Sbjct: 1232 VTIYRLITLGTIEEKIYHRQIYKQFLTNKILKDPRQKRFFKSKHFKDLFTYTKNKKG--S 1289
Query: 924 ETSNIFSQLSEDV 936
ET +IFS + ++
Sbjct: 1290 ETGDIFSGSNSEI 1302
Score = 299 (110.3 bits), Expect = 4.9e-196, Sum P(5) = 4.9e-196
Identities = 53/103 (51%), Positives = 71/103 (68%)
Query: 388 LEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS 447
++ KIP I+ NLF+YQ V+WL+ELHCQ GGI+GDEMGLGKT+Q++SFL +LH+S
Sbjct: 781 IDENFKIPFDIYKNLFEYQVTCVRWLYELHCQETGGIVGDEMGLGKTVQIVSFLASLHYS 840
Query: 448 N-MYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLG 489
+ P+++V P TLL W +E KW+P F V L H S G
Sbjct: 841 RRLGGPALIVAPATLLSNWIKEFHKWWPPFRVGLFHSSGSGGG 883
Score = 155 (59.6 bits), Expect = 4.9e-196, Sum P(5) = 4.9e-196
Identities = 36/110 (32%), Positives = 58/110 (52%)
Query: 991 DEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSR 1050
++++ ILK LF+ G+ SA+ HD IM+ E L +A ++A +A L++SR +
Sbjct: 1397 NDDSYILKCLFEKEGLKSALKHDTIMDQSGPEHSLLMNEAEKIASKAVSILKKSR---EQ 1453
Query: 1051 DDISVPTWTGKSGTAGAPSSVRKKFGSTVGSQLI--KPLEGSSSNKTGEF 1098
+ PTWTG+ G+ GAPS + +T + L P+ G G F
Sbjct: 1454 ITGNTPTWTGRFGSGGAPSFITSPTSTTTSTSLAVSSPIGGGGGG--GRF 1501
Score = 103 (41.3 bits), Expect = 4.9e-196, Sum P(5) = 4.9e-196
Identities = 26/90 (28%), Positives = 44/90 (48%)
Query: 1141 SSANVARFADTRTSRSSKNASDVQPEILIRQICTFMQQRGGSSNSACIVEHFKDRVPSKD 1200
S+ N +T N+S++ I I F+ ++GGS + I+ +F+ + +
Sbjct: 1571 STLNAEEEETAKTLFGGLNSSEI-----IESIFNFIMEKGGSVTTQSIINNFQLTITEEQ 1625
Query: 1201 LPLFKNLLKEIATLQKDPSGSRWVLKLNFV 1230
PLFK LLK ++ K RWV+K F+
Sbjct: 1626 APLFKVLLKSVSEFSK--VSKRWVVKSEFL 1653
Score = 77 (32.2 bits), Expect = 4.9e-196, Sum P(5) = 4.9e-196
Identities = 43/186 (23%), Positives = 80/186 (43%)
Query: 59 SSTSQEKLYNKLRAVEFEIGAVASTVDHL--RRVSTKEDNDIDDG-DSTEQDGREDEKSA 115
++ +Q +KL ++ V + V H + + E N++D D E E+
Sbjct: 175 NNNNQSLDLSKLGVTQYSSNYVENKVIHKIDKEILYNEINELDIKLKKIRNDISEAEQFL 234
Query: 116 VQASPNDMTLQHA-LTADRLKSLKKTKAQLVKELSHFP---KGITSKGIEHDKFIQDLVK 171
+ + ++ ++ + D L SL K+LS K +K IE I++ +K
Sbjct: 235 FKNNEREINEKNKDIDKDTLASLISLITFEKKKLSDLKSQEKSTQNKIIE----IKEKIK 290
Query: 172 EEHRPKRKSKEAQKP-GKDRSKQQKTVSVXXXXXXXXXXXXXXXGFVETKRDELVRKGIL 230
+ R KR + + +KP G + S + K S+ E++RD L+R G +
Sbjct: 291 TD-REKRINDQKRKPDGSNSSGENK--SIGELPLPSLFDKAFGFSTTESERDRLIRTGKI 347
Query: 231 TPFHKL 236
TPF ++
Sbjct: 348 TPFSEM 353
Score = 59 (25.8 bits), Expect = 3.9e-194, Sum P(5) = 3.9e-194
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 79 AVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEK 113
++ ST+ + +R K+D D DD + E + EDEK
Sbjct: 611 SIKSTISNNKR-KRKQDVDDDDDNDDEDEDDEDEK 644
Score = 55 (24.4 bits), Expect = 1.0e-193, Sum P(5) = 1.0e-193
Identities = 16/57 (28%), Positives = 29/57 (50%)
Query: 94 EDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSH 150
E+ND DD D + D +ED K ++ N+ + + + +LKK K + +S+
Sbjct: 566 EEND-DDDDEDDDDDQEDYKE-IEIEDNEDEDEDEIEEEF--TLKKNKKSIKSTISN 618
Score = 53 (23.7 bits), Expect = 3.4e-170, Sum P(5) = 3.4e-170
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 491 RKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKK 523
++K+ D DND E D D + + R PK+
Sbjct: 622 KRKQDVDDDDDNDDEDEDDEDEKIDYDDRIPKE 654
Score = 52 (23.4 bits), Expect = 2.1e-193, Sum P(5) = 2.1e-193
Identities = 19/72 (26%), Positives = 34/72 (47%)
Query: 48 KPHDKSESID-PSSTSQEKLYNKLRAVEFEI---GAVASTVDHLRRVS-TKEDNDIDDGD 102
K + K + I P S S+ K N + +I G + + + L + T ++ D DD +
Sbjct: 498 KSNSKLKKISTPKSKSKPKNNNDDDLLNLDISLSGRIRTPTNRLNLTTDTNKEKD-DDNE 556
Query: 103 STEQDGREDEKS 114
E D E+E++
Sbjct: 557 KEENDENENEEN 568
Score = 51 (23.0 bits), Expect = 1.3e-15, Sum P(5) = 1.3e-15
Identities = 34/138 (24%), Positives = 55/138 (39%)
Query: 877 EKVYHRQIY---KHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLS 933
EKVY +++ K + ++I K Q++R D N++ N + N
Sbjct: 669 EKVYQKRLLEWKKKKIRDRIKKMDQKKRLEVLEKYTDNLMKNNNNNNNNNNEEN------ 722
Query: 934 EDVNVVGXXXXXXXXXXXXXAASANADDAVGDKENNLEIGSSRRKGKEKV---DNIGD-- 988
ED ++AV +K NN EI + +EK + IGD
Sbjct: 723 EDELYPSQYDLAEDEYLNNEKLD---EEAVLNKNNNNEIEKIFEEEEEKEAEEEIIGDDY 779
Query: 989 EVDEET----NILKSLFD 1002
E+DE +I K+LF+
Sbjct: 780 EIDENFKIPFDIYKNLFE 797
Score = 48 (22.0 bits), Expect = 5.5e-193, Sum P(5) = 5.5e-193
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 92 TKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHF 151
+++DND + ++ E++ EDE ++ ND + KS KK+ ++L K++S
Sbjct: 459 SEDDNDDYNNNNNEEENEEDEID-IEKEEND-------ESPPPKSSKKSNSKL-KKIST- 508
Query: 152 PK 153
PK
Sbjct: 509 PK 510
Score = 45 (20.9 bits), Expect = 1.9e-13, Sum P(5) = 1.9e-13
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 972 IGSSRRKGKEKVDNIGDEVDEE 993
I +++RK K+ VD+ D DE+
Sbjct: 616 ISNNKRKRKQDVDDDDDNDDED 637
Score = 38 (18.4 bits), Expect = 6.2e-192, Sum P(5) = 6.2e-192
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 93 KEDNDIDDGDSTEQDGREDE 112
KE+ND + ++ E D +DE
Sbjct: 557 KEEND--ENENEENDDDDDE 574
Score = 37 (18.1 bits), Expect = 1.6e-168, Sum P(5) = 1.6e-168
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 496 KSSDTDNDGEGSHDSDYEGN 515
K D DN+ E + +++ E N
Sbjct: 549 KEKDDDNEKEENDENENEEN 568
Score = 37 (18.1 bits), Expect = 8.2e-40, Sum P(5) = 8.2e-40
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 486 QDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPK 522
+DL K K S+T + GS+ +++ +N K
Sbjct: 1277 KDLFTYTKNKKGSETGDIFSGSNSEILPEHMNDKNDK 1313
Score = 37 (18.1 bits), Expect = 8.0e-22, Sum P(4) = 8.0e-22
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 683 SLTEEQRAVYRAFLAS-SEVEQI 704
++TEEQ +++ L S SE ++
Sbjct: 1620 TITEEQAPLFKVLLKSVSEFSKV 1642
>ZFIN|ZDB-GENE-070228-1 [details] [associations]
symbol:ercc6 "excision repair cross-complementing
rodent repair deficiency, complementation group 6" species:7955
"Danio rerio" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-070228-1 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
EMBL:CR762493 IPI:IPI00933448 RefSeq:XP_688972.2
Ensembl:ENSDART00000112380 GeneID:560477 KEGG:dre:560477
NextBio:20883461 Bgee:F1RDN1 Uniprot:F1RDN1
Length = 1390
Score = 1312 (466.9 bits), Expect = 2.1e-191, Sum P(5) = 2.1e-191
Identities = 270/542 (49%), Positives = 365/542 (67%)
Query: 508 HDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGH 567
HD+ G+ +S+ K LI ++ S G+LIT+Y +R++ + + +W Y +LDEGH
Sbjct: 575 HDT---GSFTSKKEK----LIPEIVASH-GILITSYSYIRIMQDYIQRYDWHYVILDEGH 626
Query: 568 RIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAV 627
+IRNPNA ++ CKQ +T HR I++G+P+QN L ELWSLFDFVFPGKLG LPVF +F+V
Sbjct: 627 KIRNPNAGVTTACKQFRTPHRFILSGSPMQNNLKELWSLFDFVFPGKLGTLPVFMEQFSV 686
Query: 628 PITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADV--NAQLPKKTEHVLFCSLT 685
PIT+GGYANASP+QV TAY+CA VLRD I PYLLRRMKADV N LP K E VLFC LT
Sbjct: 687 PITMGGYANASPVQVQTAYKCACVLRDTINPYLLRRMKADVKANLSLPDKNEQVLFCRLT 746
Query: 686 EEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDL----------LEREQSCQ 735
E+QR VY+ FL S EV QIL+G G+ +RKICNHPDL + +Q +
Sbjct: 747 EDQRQVYQTFLDSKEVYQILNGDMQVFSGLIALRKICNHPDLFTGGPRLLRGIPHDQLTE 806
Query: 736 IPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGL 795
+G +RS KM VV +L++W QGHRVLLF Q++QML+ILE F+ +G+ Y +MDG
Sbjct: 807 EEHFGYWKRSGKMIVVESLLRLWHKQGHRVLLFTQSRQMLEILEVFVKENGFSYLKMDGT 866
Query: 796 TPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERA 855
T + R LI ++N + D+F+FILTT+VGGLG NLTGANRV+I+DPDWNPSTD QARERA
Sbjct: 867 TTIASRQPLIAQFNQNKDIFVFILTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERA 926
Query: 856 WRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLN 915
WRIGQKQ VTVYRL+T GTIEEK+YHRQI+K FLTN++LK+P+QRRFFK+ ++ +LFTL+
Sbjct: 927 WRIGQKQQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDIYELFTLS 986
Query: 916 D-DGNGGSTETSNIFSQLSEDVNVVGXXXXXXXXXXXXXAASANADDAVGDKENNLEIGS 974
DG+ G TETS IF+ DV V + +++ D+ G++ N +
Sbjct: 987 SPDGSQG-TETSAIFAGTGSDVQVPKRHKTSSPSQGTTRPSLSHSTDS-GNR-NTTSVNG 1043
Query: 975 SRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVA 1034
+ N N L+S +ANG+ S+ + A+ + + +K R +++ +
Sbjct: 1044 LPNNNTSESPN---------NKLESRSNANGLTSSTSK-ALSSMNSPQKHREKKKHCETP 1093
Query: 1035 QR 1036
++
Sbjct: 1094 EK 1095
Score = 301 (111.0 bits), Expect = 2.1e-191, Sum P(5) = 2.1e-191
Identities = 55/117 (47%), Positives = 78/117 (66%)
Query: 391 GLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM- 449
G KIP ++ LF YQ+ GV+W+WELHCQ+AGGI+GDEMGLGKTIQ+++FL L +S +
Sbjct: 473 GFKIPGFLWKKLFKYQQTGVRWMWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKLK 532
Query: 450 -----YK-----PSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAK 496
Y+ P+++VCP T++ QW +E W+P F V +LHD+ F K+ K
Sbjct: 533 TRGSNYRYAGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAVLHDTGS---FTSKKEK 586
Score = 203 (76.5 bits), Expect = 2.1e-191, Sum P(5) = 2.1e-191
Identities = 82/277 (29%), Positives = 128/277 (46%)
Query: 976 RRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQ 1035
+ + +EK D +E + +L LF +GIHS M HD IM A + + + +E +A++VA+
Sbjct: 1134 KEEDEEKEDERKNEKRSDDYVLAKLFKKSGIHSVMKHDTIMEASNPDYVLVEAEANRVAK 1193
Query: 1036 RAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGS-------------TVGSQ 1082
A AL+ SR R R +P G T P+ V+K+FG T ++
Sbjct: 1194 DALRALKVSRQ-RCR----LPYSRGS--TTATPAPVKKRFGQKKNSLLSQSSGTMTKSAE 1246
Query: 1083 LIKPLE---GSSSNKTGE---FNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQF 1136
K E S K G F+ GA +G LSSS LLAR+R N + ++
Sbjct: 1247 KCKDAEIVKKSVVKKPGSAAHFSGEGAEDESGS-LSSSSLLARMRAR--NHLKKPQSQED 1303
Query: 1137 EVASSSANVARFADTRTSRSSKNASDVQ-PEILI--RQICTFMQQRGGSSNSACIVEHFK 1193
E S+ +VA NA+ + E+L+ R F Q G +++ I+E+F
Sbjct: 1304 EEEESTQSVA-----------VNAAPTEHDELLVDLRNFVAFQAQVDGQASTKEILEYFT 1352
Query: 1194 DRVPSKDLPLFKNLLKEIATLQKDPSGS-RWVLKLNF 1229
R+ S +P+F+ LL I + P W LK ++
Sbjct: 1353 PRLTSTQMPVFRELLNNICEFHRLPGKEGMWKLKADY 1389
Score = 54 (24.1 bits), Expect = 2.1e-191, Sum P(5) = 2.1e-191
Identities = 24/103 (23%), Positives = 44/103 (42%)
Query: 134 LKSLKKTKAQLVKELSHFPKGITSK--GIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRS 191
LK + K QL + K I+ K ++ K ++ ++ R K+K +A G+D
Sbjct: 135 LKHINKILEQLTPHAAS-SKDISRKIESVKRQKENKEKQLKKIRAKQKRLQALLDGEDIQ 193
Query: 192 KQQKTVSVXXXXXXX-XXXXXXXXGFVETKRDELVRKGILTPF 233
K + + + E++ +EL+R G +TPF
Sbjct: 194 KLEAELLIEDDEEPGPSTLGSMLMPAQESEWEELIRTGHMTPF 236
Score = 53 (23.7 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 23/100 (23%), Positives = 43/100 (43%)
Query: 89 RVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRL-KSLKKTKAQLVKE 147
R S D + ++T +G + ++ SPN+ L+ A+ L S K + +
Sbjct: 1024 RPSLSHSTDSGNRNTTSVNGLPNNNTS--ESPNNK-LESRSNANGLTSSTSKALSSMNSP 1080
Query: 148 LSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPG 187
H K + E D D K +H+ ++ S++A+ G
Sbjct: 1081 QKHREKKKHCETPEKDTIPSDGHKRKHKKRKHSEDARFEG 1120
Score = 49 (22.3 bits), Expect = 7.0e-191, Sum P(5) = 7.0e-191
Identities = 31/162 (19%), Positives = 70/162 (43%)
Query: 52 KSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKE--DNDIDDGDSTE---- 105
K ES+ ++EK K+RA + + A+ D ++++ + ++D + G ST
Sbjct: 158 KIESVKRQKENKEKQLKKIRAKQKRLQALLDGED-IQKLEAELLIEDDEEPGPSTLGSML 216
Query: 106 QDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKF 165
+E E + + + MT + + K+ + ++ E S F K + + + D
Sbjct: 217 MPAQESEWEELIRTGH-MT-PFGSRIPQKQEKKEPRKVMLTENSGFDKYLADQALLADSR 274
Query: 166 IQDLVKE--------EHRPKRKSKEAQKPGKDRSKQQKTVSV 199
+ ++K+ E P ++ K KD+ Q++ + +
Sbjct: 275 KRPIMKKKTTKKHSGETTPNKEKKNGSLSSKDKKLQKRMLKL 316
Score = 45 (20.9 bits), Expect = 2.1e-191, Sum P(5) = 2.1e-191
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 278 SEAAQARPSTKLLDPESLPKLD 299
SE ++ PS +L+DPE P+ D
Sbjct: 351 SEGSEYVPSDELMDPEE-PERD 371
>UNIPROTKB|E1BYA8 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000303 "response to superoxide" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006284
"base-excision repair" evidence=IEA] [GO:0006290 "pyrimidine dimer
repair" evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IEA] [GO:0009636 "response to
toxic substance" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010332 "response to gamma radiation" evidence=IEA] [GO:0032403
"protein complex binding" evidence=IEA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0047485 "protein N-terminus binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:AADN02027759 EMBL:AADN02027760 IPI:IPI00592927
Ensembl:ENSGALT00000010107 Uniprot:E1BYA8
Length = 1498
Score = 1287 (458.1 bits), Expect = 1.8e-190, Sum P(5) = 1.8e-190
Identities = 252/430 (58%), Positives = 312/430 (72%)
Query: 522 KKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCK 581
KK L+ R + S G+LIT+Y +RL+ + + +W Y +LDEGH+IRNPNA ++L CK
Sbjct: 601 KKVKLI--REIASCHGILITSYSYIRLMQDNIHSYDWHYVILDEGHKIRNPNAAVTLACK 658
Query: 582 QLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQ 641
Q +T HRII++G+P+QN L ELWSLFDFVFPGKLG LPVF +F+VPIT+GGY+NASP+Q
Sbjct: 659 QFRTPHRIILSGSPMQNNLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYSNASPVQ 718
Query: 642 VSTAYRCAVVLRDLIMPYLLRRMKADV--NAQLPKKTEHVLFCSLTEEQRAVYRAFLASS 699
V TAY+CA VLRD I PYLLRRMKADV + LP K E VLFC LT+EQR VY+ F+ S
Sbjct: 719 VKTAYKCACVLRDAINPYLLRRMKADVKMSLSLPDKNEQVLFCRLTDEQRQVYQNFIDSK 778
Query: 700 EVEQILDGSRNSLYGIDVMRKICNHPDLLE---REQSCQIPD--------YGNPERSEKM 748
EV QIL+G G+ +RKICNHPDL + C +PD +G +RS KM
Sbjct: 779 EVYQILNGDMQVFSGLVALRKICNHPDLFSGGPKILKC-VPDADLEEADQFGYWKRSGKM 837
Query: 749 KVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEY 808
VV +LK+W QGHRVL F Q++QML ILE FL Y Y RMDG T + R LI Y
Sbjct: 838 IVVESLLKIWHKQGHRVLFFTQSRQMLQILEVFLRDRNYSYLRMDGTTTIASRQPLITRY 897
Query: 809 NNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYR 868
N +FIF+LTT+VGG+G NLTGA+RVII+DPDWNPSTD QARERAWRIGQK+ VTVYR
Sbjct: 898 NEDKSIFIFLLTTRVGGIGVNLTGADRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYR 957
Query: 869 LITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNI 928
L+T GTIEEK+YHRQI+K FLTN++LK+P+QRRFFK+ ++ +LFTL+ TETS I
Sbjct: 958 LLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLSSPDVSQGTETSAI 1017
Query: 929 FSQLSEDVNV 938
F+ DV V
Sbjct: 1018 FAGTGSDVQV 1027
Score = 304 (112.1 bits), Expect = 1.8e-190, Sum P(5) = 1.8e-190
Identities = 55/119 (46%), Positives = 79/119 (66%)
Query: 389 EGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN 448
E G K+P +F LF YQ+ GV+WLWELHCQ+AGGI+GDEMGLGKTIQ+++FL L +S
Sbjct: 489 EEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSK 548
Query: 449 M------YK-----PSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAK 496
+ Y+ P+++VCP T++ QW +E W+P F V +LH++ + K+ K
Sbjct: 549 IRTRGSNYRYQGLGPTVIVCPATVMHQWVKEFHTWWPPFRVAILHETGS---YTNKKVK 604
Score = 220 (82.5 bits), Expect = 1.8e-190, Sum P(5) = 1.8e-190
Identities = 74/272 (27%), Positives = 123/272 (45%)
Query: 976 RRKGKEKVDNIGDEVDEETN---ILKSLFDAN-GIHSAMNHDAIMNAHDEEKMRLEEQAS 1031
++K +K D+ E+D + N +L+ LF G+HS M HDAIM A + + +E +A+
Sbjct: 1226 KQKRYKKEDSEEKELDPKKNDDYVLEKLFKKTVGVHSVMKHDAIMEASSADYVLVEAEAN 1285
Query: 1032 QVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSSV--RKKFGSTVGSQL------ 1083
+VAQ A AL+ SR VPTWTG SG +GAPS V R +FG L
Sbjct: 1286 RVAQDALRALKVSRQRCLGAASGVPTWTGVSGLSGAPSGVKFRSRFGQKRNPMLLSSHST 1345
Query: 1084 -IKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQFEVASSS 1142
+ P++ T + + +S G SE +++ R
Sbjct: 1346 CVSPMKKCKDADTMKKENVKKNSSNGHFDGKSETGESSSSILDSSSLLAKMRARNHLILP 1405
Query: 1143 ANVARFADTRTSRSSKNA--SDVQPEILI--RQICTFMQQRGGSSNSACIVEHFKDRVPS 1198
D ++S A S E+L+ R F + G +++ I++ F+ ++P+
Sbjct: 1406 QRTGNEGDDNLHQASAPAPGSTEYDELLVDVRNFIAFQARVDGEASTQEILQEFESKLPA 1465
Query: 1199 KDLPLFKNLLKEIATLQKDPSGSR-WVLKLNF 1229
+F+ LL+ + + ++P+G W LK F
Sbjct: 1466 AQSCVFRELLRNLCSFHRNPNGEGVWRLKPEF 1497
Score = 63 (27.2 bits), Expect = 9.1e-23, Sum P(5) = 9.1e-23
Identities = 47/181 (25%), Positives = 74/181 (40%)
Query: 1021 EEKMRLEEQASQ-VAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSS-VRKKFGST 1078
EEK+ + Q + R + +Q R +S D + T + + G +S + GS
Sbjct: 965 EEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLSSPDVSQGTETSAIFAGTGSD 1024
Query: 1079 VG---SQLIKPLEGSSSNKTGEFNSFGAGASAGKVL-SSSELLARIRGNQENAVGAGLER 1134
V QL + LE + + T + +S+ K SSS L R R N A+ E
Sbjct: 1025 VQVPKHQLKRKLERPADDDTLKGGLHLKKSSSPKYSKSSSSHLTRHRANSSEAIETSEEA 1084
Query: 1135 Q--FEVASSSANVARFADTRTSRSSKNASDVQPEILIRQICTFMQQR---GGSSNSACIV 1189
+ E ++ A+T T +S N S + E L R + Q GSS +A +
Sbjct: 1085 KGNLETFDQNSYAKDNAETATDINSVNKS--KQESLERADISLSQSLPGGAGSSENAKVT 1142
Query: 1190 E 1190
E
Sbjct: 1143 E 1143
Score = 49 (22.3 bits), Expect = 1.8e-190, Sum P(5) = 1.8e-190
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 218 ETKRDELVRKGILTPF 233
ET+ +EL+R G +TPF
Sbjct: 236 ETEWEELIRTGQMTPF 251
Score = 46 (21.3 bits), Expect = 1.8e-190, Sum P(5) = 1.8e-190
Identities = 25/126 (19%), Positives = 51/126 (40%)
Query: 77 IGAVASTVDH-LRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLK 135
I ++S H + T+++N I + D G + S P+ R +
Sbjct: 18 ITTLSSICPHNAEQKGTEQENGICNSDLVNHFGVHNSDS----KPSTSVAVPVEVPRRGQ 73
Query: 136 SLKKTKAQLVKELSHFPKGITSKGIEHDKFIQDLVKEE--HRPKRKSKEAQKPGK--DRS 191
L Q ++ +SH + KG+ D + Q+++++ + EA + K D
Sbjct: 74 PLLHINRQQIQSVSHSAQAAELKGLGVDVYDQEVLEQGVIQQVDNAINEANRATKIADAE 133
Query: 192 KQQKTV 197
K+ ++V
Sbjct: 134 KEYQSV 139
Score = 45 (20.9 bits), Expect = 2.0e-39, Sum P(5) = 2.0e-39
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 562 VLDEGHRIRNPNAE--ISLVC 580
V +E H + N NAE SL+C
Sbjct: 1141 VTEEEHEVANENAEGDFSLLC 1161
Score = 44 (20.5 bits), Expect = 4.3e-186, Sum P(4) = 4.3e-186
Identities = 19/76 (25%), Positives = 32/76 (42%)
Query: 112 EKSAVQASPNDMTLQHALTADRLKSLK-KTKAQLVKELSHFPKGITSKGIEHDKFIQDLV 170
EK S D L+ L + +L+ +KA + KE + G + D D V
Sbjct: 317 EKRGKALSKTDKRLKKHLKKLQKHALQVHSKAGIPKEKKNLETTKLKPGQKDDSGESDYV 376
Query: 171 KEEH-RPKRKSKEAQK 185
+EH P+ +E ++
Sbjct: 377 PDEHLEPEAVEEEEEQ 392
Score = 38 (18.4 bits), Expect = 9.1e-23, Sum P(5) = 9.1e-23
Identities = 21/113 (18%), Positives = 44/113 (38%)
Query: 907 NMKDLFTLNDDGNGGSTETSNIF-SQLSEDVNVVGXXXXXXXXXXXXXAASANADDAVGD 965
N+K+L++L D G T +F Q S + + G + DA+
Sbjct: 676 NLKELWSLFDFVFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDAINP 735
Query: 966 -----KENNLEIGSSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHD 1013
+ ++++ S E+V DE+ + ++ D+ ++ +N D
Sbjct: 736 YLLRRMKADVKMSLSLPDKNEQV-LFCRLTDEQRQVYQNFIDSKEVYQILNGD 787
Score = 37 (18.1 bits), Expect = 8.2e-12, Sum P(4) = 8.2e-12
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 738 DYGNPERSEKMKVVAQVLKVWKDQG 762
DY E+ V + +K W+D G
Sbjct: 428 DYFPSSEEEEHTVGKRKVKRWRDDG 452
>UNIPROTKB|E2QSK6 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0047485 "protein N-terminus binding"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] [GO:0032786 "positive regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0010332 "response to gamma
radiation" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0009636 "response to toxic substance" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0008023 "transcription elongation factor complex"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007257 "activation of JUN kinase activity"
evidence=IEA] [GO:0007256 "activation of JNKK activity"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0006284 "base-excision repair" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0005730 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 GO:GO:0045494 GO:GO:0010332
GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
GO:GO:0008094 GO:GO:0008023 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 GeneTree:ENSGT00590000083118 CTD:2074 KO:K10841
OMA:NGEMQIF GO:GO:0000303 EMBL:AAEX03015368 RefSeq:XP_534944.2
UniGene:Cfa.1909 Ensembl:ENSCAFT00000010674 GeneID:477747
KEGG:cfa:477747 NextBio:20853169 Uniprot:E2QSK6
Length = 1486
Score = 1285 (457.4 bits), Expect = 4.9e-187, Sum P(4) = 4.9e-187
Identities = 248/425 (58%), Positives = 313/425 (73%)
Query: 522 KKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCK 581
+K + LI + G+LIT+Y +RL+ + + +W Y +LDEGH+IRNPNA ++L CK
Sbjct: 601 QKKEKLIRDIAHCH-GILITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACK 659
Query: 582 QLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQ 641
Q +T HRII++G+P+QN L ELWSLFDF+FPGKLG LPVF +F+VPIT+GGY+NASP+Q
Sbjct: 660 QFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQ 719
Query: 642 VSTAYRCAVVLRDLIMPYLLRRMKADV--NAQLPKKTEHVLFCSLTEEQRAVYRAFLASS 699
V TAY+CA VLRD I PYLLRRMK+DV + LP K E VLFC LTEEQ VY+ F+ S
Sbjct: 720 VKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTEEQHKVYQNFIDSK 779
Query: 700 EVEQILDGSRNSLYGIDVMRKICNHPDLLER--EQSCQIPD------YGNPERSEKMKVV 751
EV +IL+G G+ +RKICNHPDL + IPD +G +RS KM VV
Sbjct: 780 EVYRILNGDMQIFSGLVALRKICNHPDLFSGGPKNLKTIPDDDEEDQFGYWKRSGKMIVV 839
Query: 752 AQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNS 811
+LK+W QG RVLLF+Q++QMLDILE FL A Y Y +MDG T + R LI YN
Sbjct: 840 ESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTAIASRQPLITRYNED 899
Query: 812 SDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLIT 871
+ +F+F+LTT+VGG+G NLTGANRVII+DPDWNPSTD QARERAWRIGQK+ VTVYRL+T
Sbjct: 900 TSIFVFLLTTRVGGIGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLT 959
Query: 872 RGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQ 931
GTIEEK+YHRQI+K FLTN++LK+P+QRRFFK+ ++ +LFTL G STETS IF+
Sbjct: 960 AGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLTSPGASQSTETSAIFAG 1019
Query: 932 LSEDV 936
+V
Sbjct: 1020 TGSEV 1024
Score = 294 (108.6 bits), Expect = 4.9e-187, Sum P(4) = 4.9e-187
Identities = 54/115 (46%), Positives = 78/115 (67%)
Query: 393 KIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM--- 449
K+P +F LF YQ+ GV+WLWELHCQ+AGGI+GDEMGLGKTIQ+++FL L +S +
Sbjct: 494 KMPGFLFRKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIRTR 553
Query: 450 ---YK-----PSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAK 496
Y+ P+I+VCP T++ QW +E W+P F V +LH++ + +K+ K
Sbjct: 554 GSNYRFKGLGPTIIVCPTTVMHQWVKEFHTWWPPFRVAILHETGS---YTQKKEK 605
Score = 238 (88.8 bits), Expect = 4.9e-187, Sum P(4) = 4.9e-187
Identities = 71/265 (26%), Positives = 126/265 (47%)
Query: 976 RRKGKEKVDNIGDEVDEETN---ILKSLFDAN-GIHSAMNHDAIMNAHDEEKMRLEEQAS 1031
+R+ +++ I E E++N +L+ LF + G+HS M HDAIM+ D + + +E +A+
Sbjct: 1221 KRRYQKQDSEIESETSEQSNDDYVLEKLFKKSVGVHSVMRHDAIMDGADPDYVLVEAEAN 1280
Query: 1032 QVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGSTVGSQLIKPLEGSS 1091
+VAQ A +ALR SR VPTWTG G +GAP+ ++ +FG S+ S+
Sbjct: 1281 RVAQDALKALRLSRQQCLGASSGVPTWTGHRGISGAPAGIKSRFGQKRNSKFSVQHPSSA 1340
Query: 1092 SNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQFEVASSSANVARFADT 1151
S+K E G GK +S ++ + E++ GA + N
Sbjct: 1341 SSK--EKCQDGVPRKDGKDNASEHFSGKVE-DAESSPGALPSSSLLAKMRARNHLILPQR 1397
Query: 1152 RTSRSSKNASDVQP-------EILI--RQICTFMQQRGGSSNSACIVEHFKDRVPSKDLP 1202
S ++ + P ++L+ R F + G +++ I++ F+ ++ +
Sbjct: 1398 LESENAHQEAPAPPPPTTEHDDLLVEMRNFIAFQARVDGQASTQEILQEFESKLSASQSC 1457
Query: 1203 LFKNLLKEIATLQKDPSGSR-WVLK 1226
+F+ LL+ + T + SG W LK
Sbjct: 1458 VFRQLLRNLCTFHRTSSGEGIWKLK 1482
Score = 48 (22.0 bits), Expect = 7.6e-15, Sum P(2) = 7.6e-15
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 216 FVETKRDELVRKGILTPFHKLKGFERCIQQP-----GPSNKQNVPDEQE 259
F+++K + G + F L + P GP N + +PD+ E
Sbjct: 775 FIDSKEVYRILNGDMQIFSGLVALRKICNHPDLFSGGPKNLKTIPDDDE 823
Score = 47 (21.6 bits), Expect = 4.9e-187, Sum P(4) = 4.9e-187
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 218 ETKRDELVRKGILTPF 233
ET +EL+R G +TPF
Sbjct: 239 ETAWEELIRTGQMTPF 254
Score = 43 (20.2 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 18/82 (21%), Positives = 33/82 (40%)
Query: 69 KLRAVEF--EIGAVASTVDHLRRVSTKEDNDIDDGDST-EQDGREDEKSAVQASPNDMTL 125
K +AV E+ + VD T + + + +S E+ G D + + QA +
Sbjct: 1105 KTKAVPILEELSVTSGRVDCSSSPRTSKMDGLSSEESIHEKQGLSDRRESCQAQTEPLQE 1164
Query: 126 QHALTADRLKSLKKTKAQLVKE 147
+ K KTK +++E
Sbjct: 1165 NKESENNFSKHKSKTKHSVLEE 1186
Score = 42 (19.8 bits), Expect = 6.6e-20, Sum P(3) = 6.6e-20
Identities = 27/93 (29%), Positives = 41/93 (44%)
Query: 698 SSEVEQILDGSRNSLYGIDVMRKIC--NH---PDLLEREQSCQIPDYGNPERSEKMKVVA 752
S +VE + S +L ++ K+ NH P LE E + Q P +E ++
Sbjct: 1364 SGKVEDA-ESSPGALPSSSLLAKMRARNHLILPQRLESENAHQEAPAPPPPTTEHDDLLV 1422
Query: 753 QVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS 785
++ Q RV A TQ++L ES L AS
Sbjct: 1423 EMRNFIAFQA-RVDGQASTQEILQEFESKLSAS 1454
>UNIPROTKB|D3ZZZ1 [details] [associations]
symbol:Ercc6 "Protein Ercc6" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:1311509
GO:GO:0005524 GO:GO:0008630 GO:GO:0005730 GO:GO:0006284
GO:GO:0003677 GO:GO:0009636 GO:GO:0003682 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257
GO:GO:0006283 GO:GO:0008094 GO:GO:0008023 GO:GO:0032786
GO:GO:0006290 GO:GO:0007256 GO:GO:0000303 IPI:IPI00358023
Ensembl:ENSRNOT00000038493 ArrayExpress:D3ZZZ1 Uniprot:D3ZZZ1
Length = 1475
Score = 1252 (445.8 bits), Expect = 1.5e-185, Sum P(4) = 1.5e-185
Identities = 239/414 (57%), Positives = 304/414 (73%)
Query: 537 GLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPI 596
G+LIT+Y +RL+ + + +W Y +LDEGH+IRNPNA ++L CKQ +T HRII++G+P+
Sbjct: 613 GVLITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPM 672
Query: 597 QNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLI 656
QN L ELWSLFDF FPGKLG LPVF +F+VPIT+GGY+NASP+QV TAY+CA VLRD I
Sbjct: 673 QNNLRELWSLFDFTFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTI 732
Query: 657 MPYLLRRMKADV--NAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYG 714
PYLLRRMK+DV + LP K E VLFC LT+EQ VY+ F+ S V +IL+G G
Sbjct: 733 NPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKAVYRILNGENQIFSG 792
Query: 715 IDVMRKICNHPDLLER--EQSCQIPDYGNPE-------RSEKMKVVAQVLKVWKDQGHRV 765
+ +RKICNHPDL + + +P+ G E RS KM VV +LK+W QG RV
Sbjct: 793 LVALRKICNHPDLFSGGPKNTSALPEDGLEEEQFGYWKRSGKMIVVESLLKIWHKQGQRV 852
Query: 766 LLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGG 825
LLF+Q++QML ILE FL A Y Y +MDG T + R LI +YN + +F+F+LTT+VGG
Sbjct: 853 LLFSQSRQMLHILEVFLRAHKYSYLKMDGTTTIASRQPLITKYNEDTSIFVFLLTTRVGG 912
Query: 826 LGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIY 885
LG NLTGANRVII+DPDWNPSTD QARERAWRIGQK+ VTVYRL+T GTIEEK+YHRQI+
Sbjct: 913 LGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIF 972
Query: 886 KHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVNVV 939
K FLTN++LK+P+QRRFFK+ ++ +LFTL TETS IF+ ++ +
Sbjct: 973 KQFLTNRVLKDPKQRRFFKSNDLYELFTLTSPDASQGTETSAIFAGTGSNIQTL 1026
Score = 304 (112.1 bits), Expect = 1.5e-185, Sum P(4) = 1.5e-185
Identities = 55/115 (47%), Positives = 78/115 (67%)
Query: 391 GLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM- 449
G K+P +F LF YQ+ GV+WLWELHCQ+AGGI+GDEMGLGKTIQ+++FL L +S +
Sbjct: 490 GFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIR 549
Query: 450 -----YK-----PSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKR 494
Y+ P+++VCP T++ QW +E W+P F V +LH++ RK+R
Sbjct: 550 TRGSNYRFEGLGPTLIVCPTTVMHQWVKEFHTWWPPFRVAILHETGS-CAHRKER 603
Score = 236 (88.1 bits), Expect = 1.5e-185, Sum P(4) = 1.5e-185
Identities = 76/246 (30%), Positives = 119/246 (48%)
Query: 996 ILKSLFDAN-GIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDIS 1054
+L+ LF + G+HS + HDAI++ + + +E +A++VAQ A +ALR SR
Sbjct: 1234 VLEKLFKKSVGVHSVVKHDAIIDGSSPDYVLVEAEANRVAQDALKALRLSRQQCLGATSG 1293
Query: 1055 VPTWTGKSGTAGAPSSVRKKFGSTVGSQLI--KP---LEGSSSN--KTGE------FNSF 1101
VPTWTG G +GAP+ V+K+FG S L +P E + +N K GE F+
Sbjct: 1294 VPTWTGHRGISGAPAGVKKRFGQKRNSSLPVQRPSSLTERTQNNMKKEGEAHTAEHFSGK 1353
Query: 1102 GAGASAGKVLSSSELLARIRGNQENAVGAGLERQFEVASSSANVARFADTRTSRSSKNAS 1161
GAS+ SSS LLAR+R + LE E + +A A A ++
Sbjct: 1354 EDGASSSGAPSSSSLLARMRARNHMILPERLESDGEQLAGAAAAA--APPCSTEHDALLV 1411
Query: 1162 DVQPEILIRQICTFMQQRGGSSNSACIVEHFKDRVPSKDLPLFKNLLKEIATLQKDPSGS 1221
D+ R F Q G +++ I++ F+ ++ +F+ LL+ + + P G
Sbjct: 1412 DM------RNFIAFQAQVDGQASTQEILQAFESKLSVAQSCVFRELLRNLCNFHRTPGGE 1465
Query: 1222 R-WVLK 1226
W LK
Sbjct: 1466 GIWKLK 1471
Score = 58 (25.5 bits), Expect = 1.5e-185, Sum P(4) = 1.5e-185
Identities = 25/115 (21%), Positives = 52/115 (45%)
Query: 48 KPHDKSESIDPSSTSQEKLYNKL--RAVEFE--IGAVAST--VDHLRRVSTKEDNDIDDG 101
KP+ +S+++ + +K KL RA++F+ +G ++ R + D + ++
Sbjct: 313 KPNQRSQALSQTDKRLKKHIRKLQRRALQFQGKVGLQRGKRPLEPEERPGAEGDTEGEES 372
Query: 102 DSTEQDGREDEKSAVQA----SPNDMTLQHALTADRLKSLKKTKAQLVKELSHFP 152
S+ DG E+E+ + S +D++ + K KK Q + + FP
Sbjct: 373 GSSPTDGEEEEEQEEEGVAVLSSDDISYELKPLRKGQKYEKKVPVQEIDD-DFFP 426
Score = 51 (23.0 bits), Expect = 8.0e-185, Sum P(4) = 8.0e-185
Identities = 17/76 (22%), Positives = 29/76 (38%)
Query: 248 PSNKQNVPDEQEARSNDPFSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRPFQR 307
P+ + + + R RAL+ + R + L+PE P +G T +
Sbjct: 314 PNQRSQALSQTDKRLKKHIRKLQRRALQFQGKVGLQR-GKRPLEPEERPGAEGDTEGEES 372
Query: 308 LKTPFRMPQSEESEVE 323
+P + EE E E
Sbjct: 373 GSSPTDGEEEEEQEEE 388
Score = 50 (22.7 bits), Expect = 1.0e-184, Sum P(4) = 1.0e-184
Identities = 23/94 (24%), Positives = 39/94 (41%)
Query: 218 ETKRDELVRKGILTPFHKLKGFERCIQQPGPSNKQNVPDE---QEARSNDPFSAS-VDRA 273
E+ +EL+R G +TPF G P P ++ P + EA + + A +
Sbjct: 234 ESAWEELIRTGQMTPF----G------TPAPQKQEKKPRKIMLNEASGFEKYLADQAQLS 283
Query: 274 LRMMSEAAQARPSTKLLDPESLPKLDGPTRPFQR 307
+ +AA R + K + + T+P QR
Sbjct: 284 FKRKKQAANKRTAKKAVVVSESSRGPNETKPNQR 317
Score = 40 (19.1 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 150 HFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQ 184
HF K + + +HD ++ ++ +PK+K+K ++
Sbjct: 1161 HFSKHKSKR--KHDAAEEETTEKCPQPKQKAKNSR 1193
>CGD|CAL0000882 [details] [associations]
symbol:orf19.607 species:5476 "Candida albicans" [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000882 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000108 HOGENOM:HOG000170952 KO:K10841
RefSeq:XP_714234.1 ProteinModelPortal:Q59XB8 STRING:Q59XB8
GeneID:3644142 KEGG:cal:CaO19.607 Uniprot:Q59XB8
Length = 1055
Score = 1745 (619.3 bits), Expect = 6.8e-184, Sum P(2) = 6.8e-184
Identities = 348/718 (48%), Positives = 480/718 (66%)
Query: 393 KIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMY-K 451
K+P I+ +LFDYQK VQWLWEL+ Q+ GGIIGDEMGLGKTIQ++SFL LH+S + K
Sbjct: 262 KLPGDIYPSLFDYQKTCVQWLWELYTQKTGGIIGDEMGLGKTIQIISFLAGLHYSGLLDK 321
Query: 452 PSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSD-TDNDGEGSHDS 510
P +VV P T+L QW E +W+P +LH + +K + ++ + S
Sbjct: 322 PVLVVVPATVLNQWVNEFHRWWPPLRCIILHSIGSGMNGSVSESKLEEYLESTDPDATQS 381
Query: 511 DYEGNLSSRNPKKWDLLINRVLRSESG-LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRI 569
G S N ++ +++RV+ E G +L+TTY LR+ + +L EWGY VLDEGH+I
Sbjct: 382 SLHGIKSQINAQE---IVDRVM--EKGHVLVTTYVGLRIYSKHILPREWGYVVLDEGHKI 436
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629
RNP+++ISL CK+++TV+RII++G PIQN L ELWSLFDFVFPG+LG LPVF+ EF++PI
Sbjct: 437 RNPDSDISLTCKKIKTVNRIILSGTPIQNNLIELWSLFDFVFPGRLGTLPVFQQEFSIPI 496
Query: 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQR 689
+GGYAN++ LQV TAY+CAVVLRDLI PY+LRR+K+DV LPKK E VLF LT+ Q+
Sbjct: 497 NIGGYANSNNLQVKTAYKCAVVLRDLISPYMLRRLKSDVAQDLPKKNEMVLFVKLTKIQQ 556
Query: 690 AVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMK 749
+Y +FL S ++E IL G RN L G+D++RKICNHPDL+ R+ + +YG+P +S KM+
Sbjct: 557 ELYESFLQSEDLESILKGKRNVLMGVDILRKICNHPDLVYRDTLMKRKNYGDPAKSGKMQ 616
Query: 750 VVAQVLKVWKDQGHRVLLFAQTQQMLDILESF-----LIASG-YEYRRMDGLTPVKQRMA 803
V+ +L++W+ + H+ LLF QT+QMLDILE F LI G + Y RMDG TP+ +R
Sbjct: 617 VLKNLLRLWQSENHKTLLFCQTRQMLDILEKFVANLSLINGGDFNYLRMDGSTPISKRQM 676
Query: 804 LIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQD 863
L+D +N D+ +F+LTTKVGGLG NLTGA+RVII+DPDWNPSTD+QARERAWR+GQK+D
Sbjct: 677 LVDAFNQDPDMHVFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDIQARERAWRLGQKRD 736
Query: 864 VTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGST 923
+T+YRL+T G+IEEK+YHRQI+K FLTNKILK+P+QRRFFKA ++ DLFTL D G T
Sbjct: 737 ITIYRLMTTGSIEEKIYHRQIFKTFLTNKILKDPKQRRFFKANDLHDLFTLGDQDEEG-T 795
Query: 924 ETSNIFSQLSEDVNVVGXXXXXXXXXXXXXAASANADDAVGDKENNLEIGSSRRKGKEKV 983
ET+ +F + + D + + + + G
Sbjct: 796 ETAQLFEGGEQSQQKYSGTKPRQSRGLFKKKYKDDDDFSQVARISGVSKLDKFEDGDHN- 854
Query: 984 DNIGDEV---DEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRL-EEQASQVAQRAAE 1039
D GD +E+ I+ S+F +G+HS + HD I++ E++ L E++A ++A AAE
Sbjct: 855 DGDGDSTYSANEDNRIMSSIFAQSGVHSTLQHDDIISGSKEKESSLVEKEADKLATAAAE 914
Query: 1040 ALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKF---GSTVGSQLIKPLEGSSSNK 1094
AL++SRM ++ I PTWTGK G+AG ++K ST+ L + E + S K
Sbjct: 915 ALKKSRMQTRKNTIGTPTWTGKFGSAGKFGLKKRKLLNSSSTILQNLRQKNELTESKK 972
Score = 61 (26.5 bits), Expect = 6.8e-184, Sum P(2) = 6.8e-184
Identities = 25/82 (30%), Positives = 36/82 (43%)
Query: 218 ETKRDELVRKGILTPFHKLKGFER----------CIQQPGPSNKQNVPDE--QEARSNDP 265
ET+RD L+R G +T F F+ +++PG NK N D Q D
Sbjct: 125 ETERDYLIRTGKITAFGNENAFQSEQTHEQQSHVFLREPGLDNKVNDEDYAYQSDSEVDD 184
Query: 266 FSASVDR-ALRMMSEAAQARPS 286
S+D+ A+R + E Q S
Sbjct: 185 NDNSIDKNAVRDLGETNQESES 206
Score = 41 (19.5 bits), Expect = 8.9e-182, Sum P(2) = 8.9e-182
Identities = 32/160 (20%), Positives = 57/160 (35%)
Query: 16 TSANPEDIERDVLAAAENVAGXXXXXXXXXXXKPHDKSESIDPSSTSQEKLYNKLRAVEF 75
TS PE+ ERD L + + H++ + + L NK+ ++
Sbjct: 119 TSRLPEETERDYLIRTGKITAFGNENAFQSE-QTHEQQSHV---FLREPGLDNKVNDEDY 174
Query: 76 EIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLK 135
+ S VD DN ID + E +V + +D +L RL+
Sbjct: 175 AYQS-DSEVDD-------NDNSIDKNAVRDLGETNQESESVLHNIDDG--DESLYQQRLQ 224
Query: 136 SLKKTKAQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHR 175
+ + +A L H +GI + H + E+ +
Sbjct: 225 TWVRKRASL--RTQHQQEGIEEWFLPHPNIADAKLNEKFK 262
>UNIPROTKB|Q03468 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006290 "pyrimidine dimer repair" evidence=IEA]
[GO:0007256 "activation of JNKK activity" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009636 "response to toxic substance"
evidence=IEA] [GO:0010165 "response to X-ray" evidence=IEA]
[GO:0010224 "response to UV-B" evidence=IEA] [GO:0010332 "response
to gamma radiation" evidence=IEA] [GO:0045494 "photoreceptor cell
maintenance" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0003678
"DNA helicase activity" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IDA] [GO:0047485 "protein N-terminus
binding" evidence=IPI] [GO:0008022 "protein C-terminus binding"
evidence=IPI] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IDA] [GO:0008023 "transcription
elongation factor complex" evidence=IDA] [GO:0032786 "positive
regulation of DNA-dependent transcription, elongation"
evidence=IDA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP;TAS] [GO:0032403 "protein
complex binding" evidence=IDA] [GO:0009411 "response to UV"
evidence=IDA] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0006979
"response to oxidative stress" evidence=IDA] [GO:0006284
"base-excision repair" evidence=IMP] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0006979
GO:GO:0005730 GO:GO:0032403 GO:GO:0006284 GO:GO:0003677
GO:GO:0009636 GO:GO:0003682 Orphanet:279 GO:GO:0045494
GO:GO:0010332 GO:GO:0006366 GO:GO:0004386 GO:GO:0010165
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 EMBL:CH471187 GO:GO:0032786 GO:GO:0006290
GO:GO:0007256 Orphanet:1466 EMBL:L04791 EMBL:AY204752 EMBL:AL138760
IPI:IPI00414779 PIR:A44224 RefSeq:NP_000115.1 UniGene:Hs.654449
ProteinModelPortal:Q03468 SMR:Q03468 DIP:DIP-193N IntAct:Q03468
MINT:MINT-1193928 STRING:Q03468 PhosphoSite:Q03468 DMDM:416959
PaxDb:Q03468 PRIDE:Q03468 Ensembl:ENST00000355832 GeneID:2074
KEGG:hsa:2074 UCSC:uc001jhr.4 CTD:2074 GeneCards:GC10M050663
HGNC:HGNC:3438 MIM:133540 MIM:214150 MIM:278800 MIM:600630
MIM:609413 MIM:613761 neXtProt:NX_Q03468 Orphanet:90321
Orphanet:90322 Orphanet:90324 Orphanet:1569 Orphanet:178338
PharmGKB:PA27852 HOGENOM:HOG000170952 HOVERGEN:HBG051502
InParanoid:Q03468 KO:K10841 OMA:NGEMQIF OrthoDB:EOG476JZF
PhylomeDB:Q03468 ChiTaRS:ERCC6 GenomeRNAi:2074 NextBio:8437
ArrayExpress:Q03468 Bgee:Q03468 CleanEx:HS_ERCC6
Genevestigator:Q03468 GermOnline:ENSG00000032514 GO:GO:0000303
Uniprot:Q03468
Length = 1493
Score = 1275 (453.9 bits), Expect = 9.0e-184, Sum P(4) = 9.0e-184
Identities = 247/425 (58%), Positives = 313/425 (73%)
Query: 523 KWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQ 582
K + LI V G+LIT+Y +RL+ + + +W Y +LDEGH+IRNPNA ++L CKQ
Sbjct: 606 KKEKLIRDVAHCH-GILITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQ 664
Query: 583 LQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQV 642
+T HRII++G+P+QN L ELWSLFDF+FPGKLG LPVF +F+VPIT+GGY+NASP+QV
Sbjct: 665 FRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQV 724
Query: 643 STAYRCAVVLRDLIMPYLLRRMKADV--NAQLPKKTEHVLFCSLTEEQRAVYRAFLASSE 700
TAY+CA VLRD I PYLLRRMK+DV + LP K E VLFC LT+EQ VY+ F+ S E
Sbjct: 725 KTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKE 784
Query: 701 VEQILDGSRNSLYGIDVMRKICNHPDLLER-EQSCQ-IPD-------YGNPERSEKMKVV 751
V +IL+G G+ +RKICNHPDL ++ + +PD +G +RS KM VV
Sbjct: 785 VYRILNGEMQIFSGLIALRKICNHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIVV 844
Query: 752 AQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNS 811
+LK+W QG RVLLF+Q++QMLDILE FL A Y Y +MDG T + R LI YN
Sbjct: 845 ESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNED 904
Query: 812 SDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLIT 871
+ +F+F+LTT+VGGLG NLTGANRV+I+DPDWNPSTD QARERAWRIGQK+ VTVYRL+T
Sbjct: 905 TSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLT 964
Query: 872 RGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQ 931
GTIEEK+YHRQI+K FLTN++LK+P+QRRFFK+ ++ +LFTL STETS IF+
Sbjct: 965 AGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLTSPDASQSTETSAIFAG 1024
Query: 932 LSEDV 936
DV
Sbjct: 1025 TGSDV 1029
Score = 300 (110.7 bits), Expect = 9.0e-184, Sum P(4) = 9.0e-184
Identities = 52/105 (49%), Positives = 74/105 (70%)
Query: 391 GLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM- 449
G K+P +F LF YQ+ GV+WLWELHCQ+AGGI+GDEMGLGKTIQ+++FL L +S +
Sbjct: 496 GFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIR 555
Query: 450 -----YK-----PSIVVCPVTLLRQWKREAEKWYPSFHVELLHDS 484
Y+ P+++VCP T++ QW +E W+P F V +LH++
Sbjct: 556 TRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVAILHET 600
Score = 210 (79.0 bits), Expect = 9.0e-184, Sum P(4) = 9.0e-184
Identities = 73/266 (27%), Positives = 121/266 (45%)
Query: 976 RRKGKEKVDNIGDEVDEETN---ILKSLFDAN-GIHSAMNHDAIMNAHDEEKMRLEEQAS 1031
RR K+ +N E E++N +L+ LF + G+HS M HDAIM+ + + +E +A+
Sbjct: 1229 RRYQKQDSEN-KSEAKEQSNDDYVLEKLFKKSVGVHSVMKHDAIMDGASPDYVLVEAEAN 1287
Query: 1032 QVAQRAAEALRQSRMLRSRDDIS-VPTWTGKSGTAGAPSSVRKKFGSTVGSQLIKPLEGS 1090
+VAQ A +ALR SR R +S VPTWTG G +GAP+ + +FG S ++
Sbjct: 1288 RVAQDALKALRLSRQ-RCLGAVSGVPTWTGHRGISGAPAGKKSRFGKKRNSNF--SVQHP 1344
Query: 1091 SSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQFEVASSSANVARFAD 1150
SS E G GK R + +++ G + N +
Sbjct: 1345 SSTSPTEKCQDGIMKKEGKDNVPEHFSGRAE-DADSSSGPLASSSLLAKMRARNHLILPE 1403
Query: 1151 TRTSRSS--KNASDVQP-----EILI--RQICTFMQQRGGSSNSACIVEHFKDRVPSKDL 1201
S S + AS + P ++L+ R F G +++ I++ F+ ++ +
Sbjct: 1404 RLESESGHLQEASALLPTTEHDDLLVEMRNFIAFQAHTDGQASTREILQEFESKLSASQS 1463
Query: 1202 PLFKNLLKEIATLQKDPSGSR-WVLK 1226
+F+ LL+ + T + G W LK
Sbjct: 1464 CVFRELLRNLCTFHRTSGGEGIWKLK 1489
Score = 48 (22.0 bits), Expect = 9.0e-184, Sum P(4) = 9.0e-184
Identities = 34/151 (22%), Positives = 57/151 (37%)
Query: 97 DIDDGDSTEQDGREDEKSAVQASPN-----DMTLQHALTADRLKSLKKTKAQLVKELSHF 151
D+ D D EQ + +A+ + D+ ++ D L S + Q+ K +
Sbjct: 98 DVYDQDVLEQGVLQQVDNAIHEASRASQLVDVEKEYRSVLDDLTSCTTSLRQINKIIEQL 157
Query: 152 -PKGITSKGIEH--DKFIQDLVKEEHRPKR---KSKEAQK--PGKDRSKQQKTVSVXXXX 203
P+ TS+ I D + +E + K+ K K Q G + + S+
Sbjct: 158 SPQAATSRDINRKLDSVKRQKYNKEQQLKKITAKQKHLQAILGGAEVKIELDHASLEEDA 217
Query: 204 XXXXXXXXXXXGFV-ETKRDELVRKGILTPF 233
V ET +EL+R G +TPF
Sbjct: 218 EPGPSSLGSMLMPVQETAWEELIRTGQMTPF 248
Score = 43 (20.2 bits), Expect = 3.2e-10, Sum P(3) = 3.2e-10
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 216 FVETKRDELVRKGILTPFHKLKGFERCIQQP-----GPSNKQNVPDEQ 258
FV++K + G + F L + P GP N + +PD++
Sbjct: 779 FVDSKEVYRILNGEMQIFSGLIALRKICNHPDLFSGGPKNLKGLPDDE 826
Score = 39 (18.8 bits), Expect = 8.1e-10, Sum P(3) = 8.1e-10
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 161 EHDKFIQDLVKEEH-RPKRKSKEAQ 184
+H ++ E+H RPK+K K ++
Sbjct: 1186 KHHSVAEEETLEKHLRPKQKPKNSK 1210
Score = 38 (18.4 bits), Expect = 5.2e-37, Sum P(4) = 5.2e-37
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 491 RKKRAKSSDTDNDGEGSHDS--DY 512
+K+R + D++N E S DY
Sbjct: 1227 KKRRYQKQDSENKSEAKEQSNDDY 1250
>ASPGD|ASPL0000068126 [details] [associations]
symbol:cshA species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001304
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACD01000119 HOGENOM:HOG000170952 KO:K10841
OrthoDB:EOG44TSGZ RefSeq:XP_664707.1 ProteinModelPortal:Q5AX77
STRING:Q5AX77 EnsemblFungi:CADANIAT00000362 GeneID:2869817
KEGG:ani:AN7103.2 OMA:HSALEHD Uniprot:Q5AX77
Length = 1193
Score = 1718 (609.8 bits), Expect = 2.7e-180, Sum P(2) = 2.7e-180
Identities = 359/759 (47%), Positives = 479/759 (63%)
Query: 384 PFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA 443
P + L+ G +IP I LFDYQK GVQW+WELH Q+ GGIIGDEMGLGKTIQ ++FL
Sbjct: 380 PDLHLDNGYRIPGDIHPLLFDYQKTGVQWMWELHQQQVGGIIGDEMGLGKTIQAIAFLAG 439
Query: 444 LHFSN-MYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDN 502
LH+S + KP IVVCP T+++QW E +W+P F V +LH S G +++SS D
Sbjct: 440 LHYSKRLTKPIIVVCPATVMKQWVNEFHRWWPPFRVSILHTSGS--GMVNIKSESSREDA 497
Query: 503 DGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAV 562
G++ + G SS K ++ RV+ E +L+TTY L+ L+ VEWG +
Sbjct: 498 LMYGTY---WSGG-SSSGLKAARKVVKRVVE-EGHVLVTTYSGLQSYASLLIPVEWGGTI 552
Query: 563 LDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFE 622
LDEGH+IRNPN I++ K+L+T HRII++G P+QN L+ELWSLFDFVFP +LG L F
Sbjct: 553 LDEGHKIRNPNTSITMHAKELRTPHRIILSGTPMQNNLTELWSLFDFVFPMRLGTLVNFR 612
Query: 623 AEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFC 682
+F PI GGYANAS LQV TA +CA L+D I PYLL+R K DV A LPKK+E VLFC
Sbjct: 613 NQFEFPIRQGGYANASNLQVQTAAKCAETLKDAISPYLLQRFKIDVAADLPKKSEQVLFC 672
Query: 683 SLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNP 742
LT+ QR Y AFL S E++ IL G R LYG+D++RKICNHPDL + P+YGNP
Sbjct: 673 RLTKPQRQAYEAFLGSEEMQSILRGRRQVLYGVDILRKICNHPDLQNHKLLYAKPNYGNP 732
Query: 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIA-SGYEYRRMDGLTPVKQR 801
+S KM+VV +L++WK+ GH+ LLFAQ + MLDILE F+ + SG+ YRRMDG TP++ R
Sbjct: 733 TKSGKMQVVRSLLELWKETGHKTLLFAQHRIMLDILEKFVKSLSGFNYRRMDGTTPIQHR 792
Query: 802 MALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQK 861
++DE+N D+ +F+LTTKVGGLG NLTGA+RVII+DPDWNPSTDVQARERAWR+GQK
Sbjct: 793 QTMVDEFNKDPDLHVFLLTTKVGGLGVNLTGADRVIIYDPDWNPSTDVQARERAWRLGQK 852
Query: 862 QDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGG 921
+DVT+YRL+T GTIEEK+YHRQI+K FLTNKILK+P+QR+ F+ ++ DLF L ++G G
Sbjct: 853 RDVTIYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQRQTFQLSDLYDLFALGEEGQG- 911
Query: 922 STETSNIFSQLS----EDVNVVGXXXXXXXXXXXXXAASANADDAVGDKENNLEIGSSRR 977
TETS +F + E+ + A + G G +
Sbjct: 912 PTETSKLFKEAEVTYEENRDKDAPKERDASYQRDVEAEKQDISKVTGVAAIEQFQGEPEQ 971
Query: 978 KGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDAIMNA----HDEEKMRLEEQASQV 1033
+ K++ G + E+ +++ +F +G+HSA+ HD I+N + K+ +E +A +V
Sbjct: 972 QAKQESGESG--TNSESRLMEGIFARSGVHSALEHDQIVNGKRVVRADPKI-IEAEAKRV 1028
Query: 1034 AQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSS----VRKKFG---STVGSQLIKP 1086
A AAE LR++ I PTWTG+ G AG P +R FG ST L P
Sbjct: 1029 AAEAAEQLRRAGEAAKSVPIGTPTWTGQFGVAGKPEESPMPMRGPFGGRSSTARRALAGP 1088
Query: 1087 LEGSS----SNKTGEFNSFGAGASAGKVLSSSELLARIR 1121
S S++T S + G S + + IR
Sbjct: 1089 SSASIIANLSSRTPSSRSATNSPAPGNEPSGKDFITMIR 1127
Score = 54 (24.1 bits), Expect = 2.7e-180, Sum P(2) = 2.7e-180
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 218 ETKRDELVRKGILTPFHKL 236
E++RD L+R G +TPF ++
Sbjct: 151 ESRRDYLIRTGKITPFSRM 169
>POMBASE|SPCP25A2.02c [details] [associations]
symbol:rhp26 "SNF2 family helicase Rhp26" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISM]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCP25A2.02c GO:GO:0005829
GO:GO:0005524 GO:GO:0005634 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0003677 GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006283
HOGENOM:HOG000170952 KO:K10841 OrthoDB:EOG44TSGZ EMBL:AB022912
PIR:T50449 RefSeq:NP_588091.1 ProteinModelPortal:Q9UR24
STRING:Q9UR24 EnsemblFungi:SPCP25A2.02c.1 GeneID:2539473
KEGG:spo:SPCP25A2.02c NextBio:20800635 Uniprot:Q9UR24
Length = 973
Score = 1676 (595.0 bits), Expect = 9.0e-180, Sum P(3) = 9.0e-180
Identities = 349/677 (51%), Positives = 452/677 (66%)
Query: 387 TLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF 446
T EGG IP I +LF YQ VQWLWEL+CQ AGGIIGDEMGLGKTIQ++SFL +LH
Sbjct: 262 TFEGGFTIPGDIRPHLFRYQVTCVQWLWELYCQEAGGIIGDEMGLGKTIQIVSFLSSLHH 321
Query: 447 SNMY-KPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQ-DLGFRKKRAKSSD-TDND 503
S + KP+++VCP TL++QW E W+ V +LH + R+KR SD ++++
Sbjct: 322 SGKFQKPALIVCPATLMKQWVNEFHTWWAPLRVVVLHATGSGQRASREKRQYESDASESE 381
Query: 504 GEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVL 563
E S S SS + L+ V + +LITTY LR+ G+ +L EWGY VL
Sbjct: 382 AEESKTSIKLRGASSSFHRYAKNLVESVF-TRGHILITTYAGLRIYGDLILPREWGYCVL 440
Query: 564 DEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEA 623
DEGH+IRNP++EIS+ CKQ++TV+RII++G PIQN L+ELW+LFDFVFPG+LG LPVF+
Sbjct: 441 DEGHKIRNPDSEISISCKQIRTVNRIILSGTPIQNNLTELWNLFDFVFPGRLGTLPVFQN 500
Query: 624 EFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCS 683
+FA+PI +GGYANAS +QV TAY+CA +LRDLI PYLLRRMK DV A LPKK+E VLFC
Sbjct: 501 QFALPINIGGYANASNVQVQTAYKCACMLRDLISPYLLRRMKLDVAADLPKKSEQVLFCK 560
Query: 684 LTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDY--GN 741
LT QR Y+ FL S++++IL+G R LYGID++RKICNHPDL+ RE DY G+
Sbjct: 561 LTPLQRKAYQDFLQGSDMQKILNGKRQMLYGIDILRKICNHPDLVTREYLLHKEDYNYGD 620
Query: 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLI-ASGYEYRRMDGLTPVKQ 800
PE+S K+KV+ +L +WK QGHR LLF+QT+QMLDILE L Y RMDG T +
Sbjct: 621 PEKSGKLKVIRALLTLWKKQGHRTLLFSQTRQMLDILEIGLKDLPDVHYCRMDGSTSIAL 680
Query: 801 RMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQ 860
R L+D +N + +F+LTT+VGGLG NLTGA+RVI+FDPDWNPSTD QARERAWR+GQ
Sbjct: 681 RQDLVDNFNKNEYFDVFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLGQ 740
Query: 861 KQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNG 920
K+DV VYRL+T GTIEEK+YHRQI+K FLTNKILK+P+QRRFFK ++ DLFTL D+
Sbjct: 741 KKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQRRFFKMTDLHDLFTLGDNKTE 800
Query: 921 GSTETSNIFSQLSEDVNVVGXXXXXXXXXXXXXAASANADDA--VGDKENNLEI----G- 973
G TET ++F SE V A G K N+ ++ G
Sbjct: 801 G-TETGSMFLG-SERVLRKDNSSRNGNEAEDIPARDRKKHKIHDKGKKVNSSKVFEKMGI 858
Query: 974 SSRRKGKEKVD-NI----GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEE 1028
+S K K + N+ D + ++L +F + GI S + HD IM A E + +E+
Sbjct: 859 ASMEKYKPPQESNVTKTNSDSTLGDDSVLDDIFASAGIQSTLKHDDIMEASQTESILVEK 918
Query: 1029 QASQVAQRAAEALRQSR 1045
+A++VA A A+ R
Sbjct: 919 EATRVANEALRAVSSFR 935
Score = 62 (26.9 bits), Expect = 9.0e-180, Sum P(3) = 9.0e-180
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 218 ETKRDELVRKGILTPFHKLKGFER 241
E +R EL+R G +TPF L G ++
Sbjct: 121 ELERQELIRTGKVTPFRNLSGLQK 144
Score = 45 (20.9 bits), Expect = 9.0e-180, Sum P(3) = 9.0e-180
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 14 GVTSANPEDIERDVL-AAAENVA 35
GV S + E++ERDV A+E +A
Sbjct: 11 GVFSVDQENLERDVTNTASEYIA 33
>SGD|S000003796 [details] [associations]
symbol:RAD26 "Protein involved in transcription-coupled
nucleotide excision repair" species:4932 "Saccharomyces cerevisiae"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006283
"transcription-coupled nucleotide-excision repair"
evidence=IGI;IMP] [GO:0006289 "nucleotide-excision repair"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000003796 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 EMBL:BK006943 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006283 GO:GO:0008094
GeneTree:ENSGT00590000083118 HOGENOM:HOG000170952 KO:K10841
EMBL:X81635 EMBL:L26910 EMBL:Z49535 PIR:JC2227 RefSeq:NP_012569.1
ProteinModelPortal:P40352 SMR:P40352 DIP:DIP-3008N IntAct:P40352
MINT:MINT-439055 STRING:P40352 PaxDb:P40352 PeptideAtlas:P40352
EnsemblFungi:YJR035W GeneID:853492 KEGG:sce:YJR035W CYGD:YJR035w
OMA:DENRIME OrthoDB:EOG44TSGZ NextBio:974125 Genevestigator:P40352
GermOnline:YJR035W Uniprot:P40352
Length = 1085
Score = 1699 (603.1 bits), Expect = 3.1e-177, Sum P(2) = 3.1e-177
Identities = 378/828 (45%), Positives = 526/828 (63%)
Query: 384 PFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA 443
P L KIP I++ LF+YQK VQWL+EL+ Q GGIIGDEMGLGKTIQV++F+ A
Sbjct: 279 PDAKLNSQFKIPGEIYSLLFNYQKTCVQWLYELYQQNCGGIIGDEMGLGKTIQVIAFIAA 338
Query: 444 LHFSNMYK-PSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKK-RAKSSDTD 501
LH S + P ++VCP T+++QW E + W+P +LH + +K + +D +
Sbjct: 339 LHHSGLLTGPVLIVCPATVMKQWCNEFQHWWPPLRTVILHSMGSGMASDQKFKMDENDLE 398
Query: 502 NDGEGSHDSD--YEGNLSSRNPKK-------WDLLINRVLRSESGLLITTYEQLRLLGEK 552
N S SD YE +S KK D LI++V+ ++ +LITTY LR+ +K
Sbjct: 399 NLIMNSKPSDFSYEDWKNSTRTKKALESSYHLDKLIDKVV-TDGHILITTYVGLRIHSDK 457
Query: 553 LLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFP 612
LL V+W YAVLDEGH+IRNP++EISL CK+L+T +RII++G PIQN L+ELWSLFDF+FP
Sbjct: 458 LLKVKWQYAVLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELWSLFDFIFP 517
Query: 613 GKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQL 672
GKLG LPVF+ +F +PI +GGYANA+ +QV T Y+CAV LRDLI PYLLRR+KADV L
Sbjct: 518 GKLGTLPVFQQQFVIPINIGGYANATNIQVQTGYKCAVALRDLISPYLLRRVKADVAKDL 577
Query: 673 PKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQ 732
P+K E VLFC LT+ QR+ Y FL SS++ QI +G RN L+GID++RKICNHPDLL+R+
Sbjct: 578 PQKKEMVLFCKLTKYQRSKYLEFLHSSDLNQIQNGKRNVLFGIDILRKICNHPDLLDRDT 637
Query: 733 SCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIA-----SGY 787
PDYG+P+RS KM+VV Q+L +W QG++ LLF Q++QMLDILE F+ S
Sbjct: 638 KRHNPDYGDPKRSGKMQVVKQLLLLWHKQGYKALLFTQSRQMLDILEEFISTKDPDLSHL 697
Query: 788 EYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPST 847
Y RMDG T +K R +L+D +NN S +F+LTT+VGGLG NLTGANR+IIFDPDWNPST
Sbjct: 698 NYLRMDGTTNIKGRQSLVDRFNNES-FDVFLLTTRVGGLGVNLTGANRIIIFDPDWNPST 756
Query: 848 DVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARN 907
D+QARERAWRIGQK++V++YRL+ G+IEEK+YHRQI+K FLTN+IL +P+Q+RFFK
Sbjct: 757 DMQARERAWRIGQKREVSIYRLMVGGSIEEKIYHRQIFKQFLTNRILTDPKQKRFFKIHE 816
Query: 908 MKDLFTLNDDGNGGSTETSNIFSQLSEDVNVVGXXXXXXXXXXXXXAASANADDAVGDKE 967
+ DLF+L + NG STE +L+E+V + S +DD ++
Sbjct: 817 LHDLFSLGGE-NGYSTE------ELNEEVQ--------KHTENLKNSKSEESDDF--EQL 859
Query: 968 NNLEIGSSRRK----GKEKVDNIGDEVDEETNILKSLFDA-NGIHSAMNHDAIMNAH--D 1020
NL G S+ + GKEK +N E D +++ L + + + M+HD+++N+H
Sbjct: 860 VNLS-GVSKLESFYNGKEKKENSKTEDDR---LIEGLLGGESNLETVMSHDSVVNSHAGS 915
Query: 1021 EEKMRLEEQASQVAQRAAEALRQSRM-LRSRDDISVPTWTGKSGTAGA---PSSVRKKF- 1075
+ ++AS+VA A ALR+SR + + +I PTWTG+ G AG ++ K
Sbjct: 916 SSSNIITKEASRVAIEAVNALRKSRKKITKQYEIGTPTWTGRFGKAGKIRKRDPLKNKLT 975
Query: 1076 GST--VGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLE 1133
GS +G+ E S + ++ A + ++ S+++ L IR A L+
Sbjct: 976 GSAAILGNITKSQKEASKEARQENYDDGITFARSKEINSNTKTLENIR--------AYLQ 1027
Query: 1134 RQFEVASSSANVARFADTRTSRSSKNASDVQPEILIRQICTFMQQRGG 1181
+Q SSS ++ S S K ++ L++ I F ++R G
Sbjct: 1028 KQNNFFSSSVSILN--SIGVSLSDKE-DVIKVRALLKTIAQFDKERKG 1072
Score = 44 (20.5 bits), Expect = 3.1e-177, Sum P(2) = 3.1e-177
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 218 ETKRDELVRKGILTPFHKLKGF 239
ET+++ L+R G +T F GF
Sbjct: 139 ETEKEFLIRTGKITAFGHKAGF 160
>UNIPROTKB|E1BFL2 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 OMA:NGEMQIF GO:GO:0000303
EMBL:DAAA02062232 EMBL:DAAA02062233 EMBL:DAAA02062234
EMBL:DAAA02062235 IPI:IPI00733931 Ensembl:ENSBTAT00000046144
Uniprot:E1BFL2
Length = 1482
Score = 1284 (457.0 bits), Expect = 6.2e-167, Sum P(4) = 6.2e-167
Identities = 248/425 (58%), Positives = 315/425 (74%)
Query: 523 KWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQ 582
K + L+ + R G+LIT+Y +RL+ + + +W Y +LDEGH+IRNPNA ++L CKQ
Sbjct: 597 KKEKLVRDIARCH-GILITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAVTLACKQ 655
Query: 583 LQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQV 642
+T HRII++G+P+QN L ELWSLFDF+FPGKLG LPVF +F+VPIT+GGY+NASP+QV
Sbjct: 656 FRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQV 715
Query: 643 STAYRCAVVLRDLIMPYLLRRMKADV--NAQLPKKTEHVLFCSLTEEQRAVYRAFLASSE 700
TAY+CA VLRD I PYLLRRMK+DV + LP K E VLFC LT+EQ VY+ F+ S E
Sbjct: 716 KTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKE 775
Query: 701 VEQILDGSRNSLYGIDVMRKICNHPDLLER-EQSCQ-IPD-------YGNPERSEKMKVV 751
V +IL+G G+ +RKICNHPDL ++ + IPD +G +RS KM VV
Sbjct: 776 VYRILNGEMQIFSGLVALRKICNHPDLFSGGPKNLKGIPDEELGEDQFGYWKRSGKMIVV 835
Query: 752 AQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNS 811
+LK+W QG RVLLF+Q++QMLDILE FL A Y Y +MDG T + R LI YN
Sbjct: 836 ESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQKYSYLKMDGTTAIASRQPLITRYNED 895
Query: 812 SDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLIT 871
+ +F+F+LTT+VGGLG NLTGANRVII+DPDWNPSTD QARERAWRIGQK+ VTVYRL+T
Sbjct: 896 TSIFVFLLTTRVGGLGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLT 955
Query: 872 RGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQ 931
GTIEEK+YHRQI+K FLTN++LK+P+QRRFFK+ ++ +LFTL+ STETS IF+
Sbjct: 956 AGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKSNDLYELFTLSSPDTSQSTETSAIFAG 1015
Query: 932 LSEDV 936
DV
Sbjct: 1016 TGSDV 1020
Score = 195 (73.7 bits), Expect = 6.2e-167, Sum P(4) = 6.2e-167
Identities = 67/262 (25%), Positives = 111/262 (42%)
Query: 977 RKGKEKVDNIGDEVDEETNILKSLFDAN-GIHSAMNHDAIMNAHDEEKMRLEEQASQVAQ 1035
R+ ++ E + +L+ LF + G+HS M HDAIM+ + + +E +A++VAQ
Sbjct: 1220 RRRDPAAESEAKERSHDDYVLEKLFRKSAGVHSVMKHDAIMDGASPDHVLVEAEANRVAQ 1279
Query: 1036 RAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGSTVGSQLIKPLEGSSSNKT 1095
A ALR SR VPTWTG AGAP+ + +FG S S+S K
Sbjct: 1280 DALRALRLSRQQCLGAASGVPTWTGHRVLAGAPAGKKSRFGQKRNSSFSVQRPSSTSPK- 1338
Query: 1096 GEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQFEVASSSANVARFADTRTSR 1155
E GK S + + E++ GA + N + S
Sbjct: 1339 -EKCQDSTVKKEGKDHVSEHFSGKAE-DTESSSGALTSSSLLAKMRARNHLILPERLESE 1396
Query: 1156 SSKNASDVQP--------EILI--RQICTFMQQRGGSSNSACIVEHFKDRVPSKDLPLFK 1205
S + P ++L+ R F Q G +++ I++ F+ ++ + +F+
Sbjct: 1397 SGRLPEAAAPLPCSTEHDDLLVEMRNFIAFQAQADGQASTREILQEFESKLSASQSCVFR 1456
Query: 1206 NLLKEIATLQKDPSGSR-WVLK 1226
LL+ + T + +G W LK
Sbjct: 1457 ELLRSLCTFHRTSAGEGIWKLK 1478
Score = 141 (54.7 bits), Expect = 6.2e-167, Sum P(4) = 6.2e-167
Identities = 32/122 (26%), Positives = 62/122 (50%)
Query: 386 VTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH 445
+ L G+++P+ + +L+ Y++ + ++ C + +GD G ++L+FL
Sbjct: 482 MNLSHGVRMPKIMRKSLYKYREKDNVFPGDIRCAQGAWELGDSTGHADAQRILAFLMKTS 541
Query: 446 FSNM-----YK------PSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKR 494
F + Y P+I+VCP T++ QW +E W+P+F V +LH++ F K+
Sbjct: 542 FKRLRVRGVYALFEGLGPTIIVCPTTVMHQWVKEFHTWWPAFRVAVLHETGS---FTHKK 598
Query: 495 AK 496
K
Sbjct: 599 EK 600
Score = 53 (23.7 bits), Expect = 6.2e-167, Sum P(4) = 6.2e-167
Identities = 25/112 (22%), Positives = 49/112 (43%)
Query: 218 ETKRDELVRKGILTPFH-KL-----KGFERCIQQPGPSNKQNVPDEQEARSNDPFSASVD 271
ET +ELVR G +TPF K+ K + + ++ + D+ + A
Sbjct: 234 ETAWEELVRTGQMTPFGTKIPQKQEKKPRKLMLNEASGFEKYLADQAKLSFERKKQACNK 293
Query: 272 RALRMMSEAAQARPSTKLLDPESLPKLDGPTRPFQRLKTPFRMPQSEESEVE 323
RA + S +A + PS+ L + + + ++ +RLK + Q +++
Sbjct: 294 RAAKKASASATSEPSSALNENKPDERGKAVSKTDKRLKKQIKKLQKRALQLQ 345
Score = 48 (22.0 bits), Expect = 2.7e-10, Sum P(2) = 2.7e-10
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 216 FVETKRDELVRKGILTPFHKLKGFERCIQQP-----GPSNKQNVPDEQ 258
F+++K + G + F L + P GP N + +PDE+
Sbjct: 770 FIDSKEVYRILNGEMQIFSGLVALRKICNHPDLFSGGPKNLKGIPDEE 817
Score = 37 (18.1 bits), Expect = 3.0e-165, Sum P(4) = 3.0e-165
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 244 QQPGPSNKQNVPDEQEARSNDPFSASVDRALRMMSEAAQARPST 287
Q+P S Q+V +E +D + S ++ PST
Sbjct: 13 QEPDCSRSQDVSGSEEGTIKQEKDGDMDLGQSLPSCSSANGPST 56
>UNIPROTKB|F1SDX0 [details] [associations]
symbol:ERCC6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0047485 "protein N-terminus binding" evidence=IEA]
[GO:0045494 "photoreceptor cell maintenance" evidence=IEA]
[GO:0032786 "positive regulation of DNA-dependent transcription,
elongation" evidence=IEA] [GO:0032403 "protein complex binding"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0010165 "response to X-ray" evidence=IEA] [GO:0009636 "response
to toxic substance" evidence=IEA] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IEA]
[GO:0008023 "transcription elongation factor complex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0007257
"activation of JUN kinase activity" evidence=IEA] [GO:0007256
"activation of JNKK activity" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0006284 "base-excision repair"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0000303 "response to superoxide" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008630
GO:GO:0005730 GO:GO:0006284 GO:GO:0003677 GO:GO:0009636
GO:GO:0003682 GO:GO:0045494 GO:GO:0010332 GO:GO:0004386
GO:GO:0010165 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010224 GO:GO:0007257 GO:GO:0006283 GO:GO:0008094
GO:GO:0008023 GO:GO:0032786 GO:GO:0006290 GO:GO:0007256
GeneTree:ENSGT00590000083118 KO:K10841 OMA:NGEMQIF GO:GO:0000303
EMBL:CT990602 EMBL:CT990615 RefSeq:XP_003483566.1
Ensembl:ENSSSCT00000011375 GeneID:100738583 KEGG:ssc:100738583
Uniprot:F1SDX0
Length = 1481
Score = 1277 (454.6 bits), Expect = 6.7e-163, Sum P(3) = 6.7e-163
Identities = 266/540 (49%), Positives = 350/540 (64%)
Query: 537 GLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPI 596
G+LIT+Y +RL+ + + +W Y +LDEGH+IRNPNA I+L CKQ +T HRII++G+P+
Sbjct: 608 GILITSYSYIRLMQDDISRHDWHYVILDEGHKIRNPNAAITLACKQFRTPHRIILSGSPM 667
Query: 597 QNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLI 656
QN L ELWSLFDF+FPGKLG LPVF +F+VPIT+GGY+NASP+QV TAY+CA VLRD I
Sbjct: 668 QNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTI 727
Query: 657 MPYLLRRMKADV--NAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYG 714
PYLLRRMK+DV + LP K E VLFC LT+EQ VY+ F+ S EV +IL+G G
Sbjct: 728 NPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFIDSKEVYRILNGEMQIFSG 787
Query: 715 IDVMRKICNHPDLLER--EQSCQIP-------DYGNPERSEKMKVVAQVLKVWKDQGHRV 765
+ +RKICNHPDL + IP +G +RS KM VV +LK+W QG RV
Sbjct: 788 LVALRKICNHPDLFSGGPKNFKGIPGEELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRV 847
Query: 766 LLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGG 825
LLF+Q++QMLDILE FL A Y Y +MDG T + R LI YN + +F+F+LTT+VGG
Sbjct: 848 LLFSQSRQMLDILEVFLRAQKYSYLKMDGTTTIASRQPLITRYNEDASIFVFLLTTRVGG 907
Query: 826 LGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIY 885
LG NLTGANRVII+DPDWNPSTD QARERAWRIGQK+ VTVYRL+T GTIEEK+YHRQI+
Sbjct: 908 LGVNLTGANRVIIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIF 967
Query: 886 KHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVNVVGXXXXX 945
K FLTN++LK+P+QRRFFK+ ++ +LFTL STETS IF+ DV
Sbjct: 968 KQFLTNRVLKDPKQRRFFKSNDLYELFTLTSPDTSQSTETSAIFAGTGSDVQTP----KR 1023
Query: 946 XXXXXXXXAASANADDAVGDKENNLEIGSS-RRKGKEKVDNIGDEVDEET-NILKSLFDA 1003
+ + A+G K +L ++ +EK +G E++ T N L DA
Sbjct: 1024 HLKRKLHPVLGTDQNVAMGKKLPDLNASANDATPSEEKSIAMGAEINAATSNQEDPLKDA 1083
Query: 1004 NGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQ-RAAEALRQSRMLRSRDDISVPTWTGKS 1062
++ + + + RL+E + +++ +M R+ + S+ G S
Sbjct: 1084 PQTPRSLTSSDRLGGETDAESRLQESSGIRGNGECSDSTGVGKMCRTPGEDSIEEEEGLS 1143
Score = 301 (111.0 bits), Expect = 6.7e-163, Sum P(3) = 6.7e-163
Identities = 56/117 (47%), Positives = 78/117 (66%)
Query: 391 GLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM- 449
G K+P +F LF YQ+ GV+WLWELHCQ+AGGI+GDEMGLGKTIQ+++FL L +S +
Sbjct: 485 GFKMPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMGLGKTIQIIAFLAGLSYSKIR 544
Query: 450 -----YK-----PSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAK 496
Y+ P+I+VCP T++ QW +E W+P F V +LH++ F K+ K
Sbjct: 545 TRGSNYRFEGLGPTIIVCPTTVMHQWVKEFHTWWPPFRVAILHETGS---FTHKKEK 598
Score = 226 (84.6 bits), Expect = 1.7e-39, Sum P(3) = 1.7e-39
Identities = 80/268 (29%), Positives = 123/268 (45%)
Query: 976 RRKGKEKVDNIGD-EVDEETN---ILKSLFDAN-GIHSAMNHDAIMNAHDEEKMRLEEQA 1030
+++ ++ DN + EV E +N +L+ LF + G+HS M HDAIM+ + M +E +A
Sbjct: 1214 KKRQYQRQDNENESEVKERSNDDYVLEKLFKKSVGVHSVMKHDAIMDGASPDYMLVEAEA 1273
Query: 1031 SQVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGSTVGSQLIKPLEGS 1090
++VAQ A +ALR SR VPTWTG G AGAP+ + +FG S S
Sbjct: 1274 NRVAQDALKALRLSRQRCLGAASGVPTWTGHRGLAGAPAGRKSRFGQKRNSNFAVQHPSS 1333
Query: 1091 SSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQFEVASSSANVARFAD 1150
+S K E + G GK S ++ + E + GA L +A A
Sbjct: 1334 ASPK--EKSQDGILKKDGKDSVSEHFSGKVE-DAELSSGA-LTSSSLLAKMRARNHLILP 1389
Query: 1151 TRTSRSSKN---ASDVQP------EILI--RQICTFMQQRGGSSNSACIVEHFKDRVPSK 1199
R S + AS P E+L+ R F Q G + + I++ F+ R+ +
Sbjct: 1390 ARLESESGHVPEASAPLPSSTEHDELLVEMRNFIAFQAQVDGQAGTREILQEFEPRLSAS 1449
Query: 1200 DLPLFKNLLKEIATLQKDPSGSR-WVLK 1226
+F+ LL+ + T + G W LK
Sbjct: 1450 QSCVFRELLRNLCTFHRTSGGEGIWKLK 1477
Score = 45 (20.9 bits), Expect = 6.7e-163, Sum P(3) = 6.7e-163
Identities = 33/153 (21%), Positives = 57/153 (37%)
Query: 97 DIDDGDSTEQDGREDEKSAVQASPN-----DMTLQHALTADRLKSLKKTKAQLVKELSHF 151
D+ D D EQ SA+Q + D ++ D L S + Q+ K +
Sbjct: 97 DVYDQDVLEQGVLRQVDSAIQEASRTAQLADAEKEYRSVLDDLTSCTTSLRQIDKIIEQL 156
Query: 152 -PKGITSKGI-------EHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTVSVXXXX 203
P+ T++ I + K+ ++ ++ KRK +A G + + S+
Sbjct: 157 SPQAATNRDINRKLDSVKRQKYNKEQQLKKITAKRKRLQAILGGAEVQVEIDHASLEEEE 216
Query: 204 XXXXXXXXXXXGFV---ETKRDELVRKGILTPF 233
+ E +ELVR G +TPF
Sbjct: 217 DAEAGPSCLGSMLMPVQEAAWEELVRTGQMTPF 249
Score = 41 (19.5 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 24/97 (24%), Positives = 40/97 (41%)
Query: 105 EQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELS---HFPKGITSKGIE 161
E++G D++ + Q + K KTK ++ +E + H K +
Sbjct: 1138 EEEGLSDKRESCQVQTEPLWENGQTDTSFQKHKSKTKHRVTEEETLEKHLRPKQKPKNSK 1197
Query: 162 H--D-KF----IQDLVKEEHRPKRKSKEAQKPGKDRS 191
H D KF I LVK+ +R+ E + K+RS
Sbjct: 1198 HRRDAKFEGTRIPHLVKKRQY-QRQDNENESEVKERS 1233
Score = 37 (18.1 bits), Expect = 6.1e-20, Sum P(3) = 6.1e-20
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 655 LIMPYLLRRMKADV---NAQLPKKTEH 678
LI+P L V +A LP TEH
Sbjct: 1386 LILPARLESESGHVPEASAPLPSSTEH 1412
>UNIPROTKB|F5H493 [details] [associations]
symbol:ERCC6 "DNA excision repair protein ERCC-6"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000303 "response to superoxide"
evidence=IEA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IEA] [GO:0006290 "pyrimidine
dimer repair" evidence=IEA] [GO:0007256 "activation of JNKK
activity" evidence=IEA] [GO:0007257 "activation of JUN kinase
activity" evidence=IEA] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IEA] [GO:0009636
"response to toxic substance" evidence=IEA] [GO:0010165 "response
to X-ray" evidence=IEA] [GO:0010224 "response to UV-B"
evidence=IEA] [GO:0010332 "response to gamma radiation"
evidence=IEA] [GO:0045494 "photoreceptor cell maintenance"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0008630 GO:GO:0003677 GO:GO:0009636 GO:GO:0045494
GO:GO:0010332 GO:GO:0004386 GO:GO:0010165 InterPro:IPR014001
PROSITE:PS51192 GO:GO:0010224 GO:GO:0007257 GO:GO:0006283
EMBL:AC073366 GO:GO:0006290 GO:GO:0007256 EMBL:AL138760
HGNC:HGNC:3438 ChiTaRS:ERCC6 GO:GO:0000303 IPI:IPI01012579
ProteinModelPortal:F5H493 SMR:F5H493 Ensembl:ENST00000542458
UCSC:uc009xod.3 ArrayExpress:F5H493 Bgee:F5H493 Uniprot:F5H493
Length = 863
Score = 1237 (440.5 bits), Expect = 6.0e-146, Sum P(2) = 6.0e-146
Identities = 236/391 (60%), Positives = 295/391 (75%)
Query: 557 EWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLG 616
+W Y +LDEGH+IRNPNA ++L CKQ +T HRII++G+P+QN L ELWSLFDF+FPGKLG
Sbjct: 9 DWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLG 68
Query: 617 VLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADV--NAQLPK 674
LPVF +F+VPIT+GGY+NASP+QV TAY+CA VLRD I PYLLRRMK+DV + LP
Sbjct: 69 TLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPD 128
Query: 675 KTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLER-EQS 733
K E VLFC LT+EQ VY+ F+ S EV +IL+G G+ +RKICNHPDL ++
Sbjct: 129 KNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEMQIFSGLIALRKICNHPDLFSGGPKN 188
Query: 734 CQ-IPD-------YGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS 785
+ +PD +G +RS KM VV +LK+W QG RVLLF+Q++QMLDILE FL A
Sbjct: 189 LKGLPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLFSQSRQMLDILEVFLRAQ 248
Query: 786 GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNP 845
Y Y +MDG T + R LI YN + +F+F+LTT+VGGLG NLTGANRV+I+DPDWNP
Sbjct: 249 KYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNP 308
Query: 846 STDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKA 905
STD QARERAWRIGQK+ VTVYRL+T GTIEEK+YHRQI+K FLTN++LK+P+QRRFFK+
Sbjct: 309 STDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQFLTNRVLKDPKQRRFFKS 368
Query: 906 RNMKDLFTLNDDGNGGSTETSNIFSQLSEDV 936
++ +LFTL STETS IF+ DV
Sbjct: 369 NDLYELFTLTSPDASQSTETSAIFAGTGSDV 399
Score = 210 (79.0 bits), Expect = 6.0e-146, Sum P(2) = 6.0e-146
Identities = 73/266 (27%), Positives = 121/266 (45%)
Query: 976 RRKGKEKVDNIGDEVDEETN---ILKSLFDAN-GIHSAMNHDAIMNAHDEEKMRLEEQAS 1031
RR K+ +N E E++N +L+ LF + G+HS M HDAIM+ + + +E +A+
Sbjct: 599 RRYQKQDSEN-KSEAKEQSNDDYVLEKLFKKSVGVHSVMKHDAIMDGASPDYVLVEAEAN 657
Query: 1032 QVAQRAAEALRQSRMLRSRDDIS-VPTWTGKSGTAGAPSSVRKKFGSTVGSQLIKPLEGS 1090
+VAQ A +ALR SR R +S VPTWTG G +GAP+ + +FG S ++
Sbjct: 658 RVAQDALKALRLSRQ-RCLGAVSGVPTWTGHRGISGAPAGKKSRFGKKRNSNF--SVQHP 714
Query: 1091 SSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQFEVASSSANVARFAD 1150
SS E G GK R + +++ G + N +
Sbjct: 715 SSTSPTEKCQDGIMKKEGKDNVPEHFSGRAE-DADSSSGPLASSSLLAKMRARNHLILPE 773
Query: 1151 TRTSRSS--KNASDVQP-----EILI--RQICTFMQQRGGSSNSACIVEHFKDRVPSKDL 1201
S S + AS + P ++L+ R F G +++ I++ F+ ++ +
Sbjct: 774 RLESESGHLQEASALLPTTEHDDLLVEMRNFIAFQAHTDGQASTREILQEFESKLSASQS 833
Query: 1202 PLFKNLLKEIATLQKDPSGSR-WVLK 1226
+F+ LL+ + T + G W LK
Sbjct: 834 CVFRELLRNLCTFHRTSGGEGIWKLK 859
Score = 43 (20.2 bits), Expect = 3.9e-11, Sum P(3) = 3.9e-11
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 216 FVETKRDELVRKGILTPFHKLKGFERCIQQP-----GPSNKQNVPDEQ 258
FV++K + G + F L + P GP N + +PD++
Sbjct: 149 FVDSKEVYRILNGEMQIFSGLIALRKICNHPDLFSGGPKNLKGLPDDE 196
Score = 39 (18.8 bits), Expect = 9.9e-11, Sum P(3) = 9.9e-11
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 161 EHDKFIQDLVKEEH-RPKRKSKEAQ 184
+H ++ E+H RPK+K K ++
Sbjct: 556 KHHSVAEEETLEKHLRPKQKPKNSK 580
Score = 38 (18.4 bits), Expect = 3.9e-11, Sum P(3) = 3.9e-11
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 491 RKKRAKSSDTDNDGEGSHDS--DY 512
+K+R + D++N E S DY
Sbjct: 597 KKRRYQKQDSENKSEAKEQSNDDY 620
>WB|WBGene00000803 [details] [associations]
symbol:csb-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0004427 "inorganic
diphosphatase activity" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006796 "phosphate-containing compound metabolic
process" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0009650 "UV protection"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009650
GeneTree:ENSGT00590000083118 KO:K10841 EMBL:Z81089 PIR:T22595
RefSeq:NP_510607.2 ProteinModelPortal:Q93781 SMR:Q93781
EnsemblMetazoa:F53H4.1 GeneID:181674 KEGG:cel:CELE_F53H4.1
UCSC:F53H4.1 CTD:181674 WormBase:F53H4.1 HOGENOM:HOG000020742
InParanoid:Q93781 OMA:GDICNHP NextBio:914906 Uniprot:Q93781
Length = 957
Score = 787 (282.1 bits), Expect = 4.8e-82, Sum P(3) = 4.8e-82
Identities = 178/533 (33%), Positives = 279/533 (52%)
Query: 393 KIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKP 452
K+ ++N L +Q+ GV+WL + R+GGI+ DEMGLGKTIQ + FL ++ +
Sbjct: 185 KVNAGVWNKLHKFQQEGVEWLQKKTDHRSGGILADEMGLGKTIQSVVFLRSIQETARTHY 244
Query: 453 SIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDY 512
L+ HV ++ ++L +A+ + DY
Sbjct: 245 KTTGLDTALI------------VCHVSIIAQWIKELNQWFPKARVFLLHSHCSTGRQEDY 292
Query: 513 EGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNP 572
G++ + ++ R + +++TTY L + ++ W +LDEGH IRN
Sbjct: 293 VGSIFRKLQRR------RKEYPDGAIILTTYSLFTKLKKPIVKHLWQVVILDEGHYIRNE 346
Query: 573 NAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVG 632
N + S+ ++L T R I+TG P QN+LSE W L DFV PG+L F F I G
Sbjct: 347 NTKCSIAMRKLMTTQRFILTGTPFQNRLSEFWKLVDFVHPGRLSDSATFHRNFTHIINAG 406
Query: 633 GYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNA--QLPKKTEHVLFCSLTEEQRA 690
N SP + AY C V L + P +LRR++ D QLP+K E VL C L++ QR
Sbjct: 407 ANLNCSPEAAAKAYECLVALHIAVKPLILRRLQEDHKEVLQLPEKQEIVLSCELSKRQRR 466
Query: 691 VYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKV 750
+Y + S +V +I++ + GI+ + ICNHP + R S P +G+ + S K+++
Sbjct: 467 LYMEYGNSHQVNEIIERRLKAFVGINHLTNICNHPGIY-RSLSPASPKFGSIKDSGKVEM 525
Query: 751 VAQVLKVW-KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYN 809
++ W K +RV+LF Q + ++ ++E FL G + + G R +I ++
Sbjct: 526 TFKLFDDWFKSPTNRVILFTQRRTVITMMEYFLAEKGIKCVSLTGADSAAARPKIIKKFE 585
Query: 810 NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRL 869
+ + +F++TT+ GGLG NLT AN+VIIFDPDWNP D QA+ R +R+GQ DV +YRL
Sbjct: 586 DDVSIKVFLMTTRAGGLGLNLTCANKVIIFDPDWNPQADNQAKNRIYRMGQTNDVAIYRL 645
Query: 870 ITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGS 922
++ GTIE+ + +Q+ K L ++L N + +F + DLF L G GS
Sbjct: 646 VSNGTIEDLKFFKQVQKENLAARLLHNAEIDQFVPNNTLADLFRLKPKGLEGS 698
Score = 42 (19.8 bits), Expect = 4.8e-82, Sum P(3) = 4.8e-82
Identities = 13/34 (38%), Positives = 15/34 (44%)
Query: 102 DSTEQDGREDEKSAVQASPNDMTLQHALTADRLK 135
D E D ED KSA ND + D+LK
Sbjct: 127 DFIESDDNEDYKSAGLLDDND-SKNFKARIDKLK 159
Score = 37 (18.1 bits), Expect = 4.8e-82, Sum P(3) = 4.8e-82
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 965 DKENNLEIGSS-RRKGKEKVDNIGDEVD 991
DK + ++ S ++K K + D+ DEVD
Sbjct: 910 DKYRSADVLSPVKKKNKRRSDD-NDEVD 936
>TAIR|locus:2160811 [details] [associations]
symbol:CHR24 "chromatin remodeling 24" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0006270
"DNA replication initiation" evidence=RCA] [GO:0006275 "regulation
of DNA replication" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0010051 "xylem and phloem pattern formation" evidence=RCA]
[GO:0048439 "flower morphogenesis" evidence=RCA] [GO:0048519
"negative regulation of biological process" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046686 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AF462829 EMBL:AY142010 IPI:IPI00526353 RefSeq:NP_201200.2
UniGene:At.28262 ProteinModelPortal:Q8W103 PaxDb:Q8W103
PRIDE:Q8W103 EnsemblPlants:AT5G63950.1 GeneID:836516
KEGG:ath:AT5G63950 TAIR:At5g63950 HOGENOM:HOG000029838
InParanoid:Q8W103 OMA:VIVYRLM PhylomeDB:Q8W103
ProtClustDB:CLSN2690259 Genevestigator:Q8W103 Uniprot:Q8W103
Length = 1090
Score = 405 (147.6 bits), Expect = 2.1e-78, Sum P(3) = 2.1e-78
Identities = 77/191 (40%), Positives = 125/191 (65%)
Query: 741 NPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQ 800
N S K+ + +L+ +GHRVL+F+QT++ML++++ L ++GY + R+DG T
Sbjct: 727 NDSISCKLSFIMSLLENLIPEGHRVLIFSQTRKMLNLIQDSLTSNGYSFLRIDGTTKAPD 786
Query: 801 RMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQ 860
R+ ++E+ IF+LT++VGGLG LT A+RVI+ DP WNPSTD Q+ +RA+RIGQ
Sbjct: 787 RLKTVEEFQEGHVAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQ 846
Query: 861 KQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNG 920
+DV VYRL+T T+EEK+Y +Q+YK L ++ +Q R+F +++++LF+L G
Sbjct: 847 TKDVIVYRLMTSATVEEKIYRKQVYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKGGFD 906
Query: 921 GSTETSNIFSQ 931
S ++ +
Sbjct: 907 VSPTQQQLYEE 917
Score = 321 (118.1 bits), Expect = 2.1e-78, Sum P(3) = 2.1e-78
Identities = 87/238 (36%), Positives = 132/238 (55%)
Query: 511 DYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLR-----LLGEKLLDVE-------W 558
+Y G +S +++DL + +L+ + G+L+TTY+ +R L G+ E W
Sbjct: 455 EYYG--TSTKAREYDL--HHILQGK-GILLTTYDIVRNNTKALQGDDHYTDEDDEDGNKW 509
Query: 559 GYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVL 618
Y +LDEGH I+NPN + + ++ + HRII++G PIQN L ELW+LF+F PG LG
Sbjct: 510 DYMILDEGHLIKNPNTQRAKSLLEIPSSHRIIISGTPIQNNLKELWALFNFSCPGLLGDK 569
Query: 619 PVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADV------NAQL 672
F+ + I G NA+ + A LR+ I P+ LRR+K++V ++L
Sbjct: 570 NWFKQNYEHYILRGTDKNATDREQRIGSTVAKNLREHIQPFFLRRLKSEVFGDDGATSKL 629
Query: 673 PKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLER 730
KK E V++ LT QR +Y AFL S V DGS L + +++KIC+HP LL +
Sbjct: 630 SKKDEIVVWLRLTACQRQLYEAFLNSEIVLSAFDGS--PLAALTILKKICDHPLLLTK 685
Score = 207 (77.9 bits), Expect = 2.1e-78, Sum P(3) = 2.1e-78
Identities = 40/86 (46%), Positives = 54/86 (62%)
Query: 386 VTLEG---GLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLG 442
+TL G +P I L+ +Q+ G+ WLW LH Q GGI+GD+MGLGKT+Q+ SFL
Sbjct: 358 ITLTGLNLSYTLPGKIATMLYPHQREGLNWLWSLHTQGKGGILGDDMGLGKTMQICSFLA 417
Query: 443 ALHFSNMYKPSIVVCPVTLLRQWKRE 468
L S + K ++VV P TLL W +E
Sbjct: 418 GLFHSKLIKRALVVAPKTLLPHWMKE 443
Score = 41 (19.5 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 873 GTIEEKVYHRQIYKHFLTNKILKNPQQR 900
G + +K + +Q Y+H++ KN R
Sbjct: 564 GLLGDKNWFKQNYEHYILRGTDKNATDR 591
Score = 37 (18.1 bits), Expect = 9.2e-11, Sum P(2) = 9.2e-11
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 564 DEGHRIRNPNAEISLVCKQLQTVHRIIM 591
D G +I+ AE++ K ++ RI M
Sbjct: 1043 DGGAKIQKQIAELTRELKDMKAAERINM 1070
>ZFIN|ZDB-GENE-060531-56 [details] [associations]
symbol:ercc6l "excision repair cross-complementing
rodent repair deficiency, complementation group 6-like"
species:7955 "Danio rerio" [GO:0016539 "intein-mediated protein
splicing" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000776 "kinetochore" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000775 "chromosome, centromeric region"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0000777
"condensed chromosome kinetochore" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR006141 InterPro:IPR011990
InterPro:IPR019734 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-060531-56 GO:GO:0005524 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
GO:GO:0016539 CTD:54821 GeneTree:ENSGT00590000083118
OrthoDB:EOG4FR0RD EMBL:CR391924 EMBL:BX510925 EMBL:BC150168
IPI:IPI00635423 RefSeq:NP_001093563.1 UniGene:Dr.38615
ProteinModelPortal:A2BGR3 Ensembl:ENSDART00000015401
GeneID:100005291 KEGG:dre:100005291 InParanoid:A2BGR3
NextBio:20786618 Bgee:A2BGR3 Uniprot:A2BGR3
Length = 1451
Score = 412 (150.1 bits), Expect = 4.4e-78, Sum P(6) = 4.4e-78
Identities = 88/207 (42%), Positives = 131/207 (63%)
Query: 724 HPDLLER--EQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESF 781
H D E Q I D+ E S K++ V +++ +++GHR L+F+Q+++MLDI+E
Sbjct: 451 HSDESESAVSQIDNISDHTLIEESGKLQFVVSLMECLREEGHRTLIFSQSRKMLDIMERV 510
Query: 782 LIASGYEYRRMDG-LTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFD 840
L + R+DG +T + +R I + IF+LTT+VGG+G LTGANRV+IFD
Sbjct: 511 LRNRNFRLLRLDGTVTQLAEREKRISLFQTDKRYTIFLLTTQVGGVGITLTGANRVVIFD 570
Query: 841 PDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL---KNP 897
P WNP+TD QA +RA+RIGQ ++V +YRLIT GT+EEK+Y RQ++K L + KNP
Sbjct: 571 PSWNPATDAQAVDRAYRIGQTENVIIYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNP 630
Query: 898 QQRRFFKARNMKDLFTLNDDGNGGSTE 924
R+F + +++LF L +D ST+
Sbjct: 631 F--RYFSKQELRELFKL-EDTRSSSTQ 654
Score = 248 (92.4 bits), Expect = 4.4e-78, Sum P(6) = 4.4e-78
Identities = 60/178 (33%), Positives = 96/178 (53%)
Query: 506 GSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKL-----LDVEWGY 560
G ++ G SS+ + +L R+ R + G++ITTY+ L E+L + +W Y
Sbjct: 179 GMRVKEFHG--SSKTERNRNL--ERIQR-KGGVIITTYQMLINNYEQLGSNGHREFKWDY 233
Query: 561 AVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKL-GVLP 619
+LDE H+I+ + + + + +R+++TG P+QN L E+W+LFDF G L G
Sbjct: 234 VILDEAHKIKTSSTKTAKSAHAIPAKNRVLLTGTPVQNNLREMWALFDFACQGSLLGTSK 293
Query: 620 VFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTE 677
F+ E+ PIT +A+P + + R + L D+I PY LRR KADV + K E
Sbjct: 294 TFKTEYENPITRAREKDATPGEKALGLRISQNLTDIIKPYFLRRTKADVQQKKLKLEE 351
Score = 221 (82.9 bits), Expect = 4.4e-78, Sum P(6) = 4.4e-78
Identities = 42/104 (40%), Positives = 69/104 (66%)
Query: 385 FVTLEG-GLKIPESIFNNLFDYQKVGVQWLWELHCQ-RAGGIIGDEMGLGKTIQVLSFLG 442
FV + GLK+ + +++ L+D+QK GV +L+ L+ R GGI+ D+MGLGKTIQV+SFL
Sbjct: 87 FVNVNNSGLKLYKGLYDKLYDHQKEGVAFLYSLYRDGRKGGILADDMGLGKTIQVISFLS 146
Query: 443 ALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQ 486
++ + + +++V P +L++ W RE KW P V+ H S++
Sbjct: 147 GMYDAELANHTLLVMPTSLIKNWVREFAKWTPGMRVKEFHGSSK 190
Score = 101 (40.6 bits), Expect = 4.4e-78, Sum P(6) = 4.4e-78
Identities = 17/65 (26%), Positives = 40/65 (61%)
Query: 672 LPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLERE 731
L +K + +++ L+ Q +Y F++ +++++L +R+ L + V++K+C+HP LL +
Sbjct: 375 LTRKNDLIVWTYLSSVQEDIYNKFISLDQIKELLTTTRSPLAELTVLKKLCDHPRLLSQR 434
Query: 732 QSCQI 736
Q+
Sbjct: 435 AVIQL 439
Score = 52 (23.4 bits), Expect = 4.4e-78, Sum P(6) = 4.4e-78
Identities = 23/101 (22%), Positives = 36/101 (35%)
Query: 957 ANADDAVGDKENNLEIG--SSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDA 1014
A + GDK + EI S + + IGD S D + +
Sbjct: 1266 AEEEKPSGDKSESYEISEASETHTDNSEEEIIGDHTGSYKISESSEADESVVEEEEPSGE 1325
Query: 1015 IMNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISV 1055
+N + E EE A +A + E S +L S D+ +
Sbjct: 1326 TLNTEESEMGEEEESAELIAGQEQEEWH-SAVLESTGDVEL 1365
Score = 51 (23.0 bits), Expect = 5.6e-78, Sum P(6) = 5.6e-78
Identities = 40/210 (19%), Positives = 86/210 (40%)
Query: 961 DAVGDKENNLEIGSSRRKGKEKVDNIGDEVDEETNILKSLFDAN-GIHSAMNHDAIMNAH 1019
D G++ I ++ E V+ EV + ++LK N + + H ++
Sbjct: 1057 DVSGERLEEPSINHDKQNNGEFVNYNDSEVSKRESLLKIRSTPNESVDDSFVH-SVRTKK 1115
Query: 1020 DEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDIS-VPTWTGKSGTAGAPSSVRKKFGST 1078
+ EE+ + + L S + D IS + + T K+ + +R+ ++
Sbjct: 1116 RQVISDTEEEEEEEEESEKPCLTSSPFI---DAISRLGSSTPKAVLVDG-ARLRRSLNAS 1171
Query: 1079 VGSQ---LIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQ-ENAVGAGLER 1134
V S+ ++ LE S ++ E + +GAS + EL+ ++ + +N+ +
Sbjct: 1172 VASRRSFVVSLLENESDEESNEDKTKSSGASE---TCADELVEEVQTSSGDNS------K 1222
Query: 1135 QFEVASSSANVAR--FADTRTSRSSKNASD 1162
+E + ++ +A + R KN SD
Sbjct: 1223 SYETSEANGTLADELVEEEGEYREGKNTSD 1252
Score = 46 (21.3 bits), Expect = 1.8e-12, Sum P(4) = 1.8e-12
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 478 VELLHDSAQDLGFRKKRAKSSDTDNDGEGSH 508
+E+ S DL F K+ A D D E H
Sbjct: 681 MEMFGISDHDLMFTKEPAADEDDPEDAESHH 711
Score = 39 (18.8 bits), Expect = 4.4e-78, Sum P(6) = 4.4e-78
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 267 SASVDRALRMMSEAAQARPSTKL 289
+ + RAL + A Q +PS KL
Sbjct: 40 NGELPRALELFQLAYQLQPSEKL 62
>UNIPROTKB|I3LFY4 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001440
InterPro:IPR001650 InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271
Pfam:PF00515 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
OMA:TKNGDLE EMBL:CU469343 Ensembl:ENSSSCT00000023457 Uniprot:I3LFY4
Length = 1225
Score = 413 (150.4 bits), Expect = 3.5e-77, Sum P(4) = 3.5e-77
Identities = 88/210 (41%), Positives = 135/210 (64%)
Query: 735 QIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDG 794
Q+ D E S KM + +LK +D+GH+ L+F+Q++Q+L+ILE L ++ R+DG
Sbjct: 429 QVSDETLMEESGKMTFLMDLLKRLRDEGHQTLVFSQSRQILNILERLLKNRHFKILRIDG 488
Query: 795 -LTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARE 853
+T + +R I + + D +F+LTT+VGG+G LT A+RV+IFDP WNP+TD QA +
Sbjct: 489 TITHLVEREKRISLFQQNKDYSVFLLTTQVGGVGLTLTAASRVVIFDPSWNPATDAQAVD 548
Query: 854 RAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL---KNPQQRRFFKARNMKD 910
R +RIGQK++V VYRLIT GT+EEK+Y RQ++K L + KNP R+F + +++
Sbjct: 549 RVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNPF--RYFSKQELRE 606
Query: 911 LFTLNDDGNGGST-ETSNIF-SQLSEDVNV 938
LFT+ D N + + ++ SQ D N+
Sbjct: 607 LFTIEDFQNSATQLQLQSLHASQRRSDKNL 636
Score = 244 (91.0 bits), Expect = 3.5e-77, Sum P(4) = 3.5e-77
Identities = 52/152 (34%), Positives = 85/152 (55%)
Query: 532 LRSESGLLITTYEQLRLLGEKLLDVE-----WGYAVLDEGHRIRNPNAEISLVCKQLQTV 586
++ +G++ITTY+ L ++L + W Y +LDE H+I+ + + ++ + +
Sbjct: 169 IQQRNGVIITTYQMLINNWQQLSSLNGREFVWDYVILDEAHKIKTSSTKSAICARAIPAR 228
Query: 587 HRIIMTGAPIQNKLSELWSLFDFVFPGKL-GVLPVFEAEFAVPITVGGYANASPLQVSTA 645
+RI++TG PIQN L ELWSLFDF G L G L F+ E+ PIT +A+P + +
Sbjct: 229 NRILLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALG 288
Query: 646 YRCAVVLRDLIMPYLLRRMKADVNAQLPKKTE 677
++ + L +I PY LRR K +V + E
Sbjct: 289 FKISENLMAIIKPYFLRRTKEEVQKKKSSNPE 320
Score = 204 (76.9 bits), Expect = 3.5e-77, Sum P(4) = 3.5e-77
Identities = 37/98 (37%), Positives = 61/98 (62%)
Query: 391 GLKIPESIFNNLFDYQKVGVQWLWELHCQ-RAGGIIGDEMGLGKTIQVLSFLGALHFSNM 449
GL + + N LF+YQK GV +L+ L+ R GGI+ D+MGLGKT+Q+++FL + +++
Sbjct: 63 GLLLYRELHNQLFEYQKEGVAFLYSLYRDGRRGGILADDMGLGKTVQIIAFLSGMFDASL 122
Query: 450 YKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQD 487
+++ P +L+ W RE KW P V+ H ++D
Sbjct: 123 VNHVLLIMPTSLISTWLREFVKWTPGMRVKTFHGPSKD 160
Score = 110 (43.8 bits), Expect = 3.5e-77, Sum P(4) = 3.5e-77
Identities = 22/78 (28%), Positives = 47/78 (60%)
Query: 666 ADVNAQLP---KKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKIC 722
AD ++P +K + +++ L Q +YR F++ ++++L +R+ L + V++K+C
Sbjct: 330 ADAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLC 389
Query: 723 NHPDLLEREQSCQIPDYG 740
+HP LL ++CQ+ + G
Sbjct: 390 DHPRLLSA-RACQLLNLG 406
Score = 42 (19.8 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 492 KKRAKSSDTDNDGEGSHDSDYEGNLSSRNP 521
K R+K+ D+D E ++D+ ++ + SS NP
Sbjct: 994 KVRSKARRIDSDDEDANDT-FK-DTSSTNP 1021
Score = 41 (19.5 bits), Expect = 3.7e-33, Sum P(2) = 3.7e-33
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 699 SEVEQILDGSRN-SLYGIDVMRKICNHPDLLEREQSCQIPDY 739
S +++I + + +G D +CN LL RE Q+ +Y
Sbjct: 36 SRIQKIQEALEELAEHGEDEFTDVCNSGLLLYRELHNQLFEY 77
>DICTYBASE|DDB_G0288873 [details] [associations]
symbol:pich "polo-interacting checkpoint helicase"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0288873 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000125 RefSeq:XP_636560.1
EnsemblProtists:DDB0233442 GeneID:8626845 KEGG:ddi:DDB_G0288873
InParanoid:Q54IB7 OMA:DYGHEEE Uniprot:Q54IB7
Length = 1332
Score = 468 (169.8 bits), Expect = 6.1e-77, Sum P(5) = 6.1e-77
Identities = 107/270 (39%), Positives = 162/270 (60%)
Query: 674 KKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQS 733
+K + V++ L + Q +YR FL S EV+ L+ +++ L + V++KIC+HP LL E
Sbjct: 718 RKNDFVVWTKLADSQIELYRTFLESDEVKDALNKTQSPLAALTVLKKICDHPHLLREEMK 777
Query: 734 C----QIPDY----GNPERS--------EKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDI 777
++ D G RS K +++ ++L GHRVL+F+Q+ +ML+
Sbjct: 778 MISLDEMKDLLSKVGGSSRSINSLVNNSGKFQLLLKLLPNLHQDGHRVLMFSQSVKMLED 837
Query: 778 LESFLIASGYEYRRMDG-LTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRV 836
E L G Y R+DG ++ K+R +ID YN F FI+T +VG LG NLT A+RV
Sbjct: 838 FEILLDHLGLTYLRIDGSISSTKKRQEIIDLYNTDMSYFAFIMTIQVGALGLNLTSADRV 897
Query: 837 IIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKN 896
+I DP WN + D QA +RA+RIGQK+DV VYRL++ GTIEEK+Y +Q++K L +L N
Sbjct: 898 LILDPSWN-TIDNQAVDRAYRIGQKKDVVVYRLMSCGTIEEKIYRKQVFKGSLMKTMLNN 956
Query: 897 PQ--QRRFFKARNMKDLFTLNDDGNGGSTE 924
Q R+F + +++++FTL DD N T+
Sbjct: 957 TMSGQHRYFSSNDLREMFTL-DDTNISVTQ 985
Score = 232 (86.7 bits), Expect = 6.1e-77, Sum P(5) = 6.1e-77
Identities = 91/402 (22%), Positives = 164/402 (40%)
Query: 92 TKEDNDIDD-GDSTEQDGREDE----KSAVQASPNDMTLQHALTADRLKSLKKTKAQLVK 146
TK+ +D+ DS ++D EDE K + S +D + + + LKS++ +++
Sbjct: 91 TKKTSDLSICNDSEDEDEDEDEDNHQKVILDESDSDEKKKVEVKSSTLKSIQTPESEEES 150
Query: 147 ELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEA-QKPGKDRSKQQKTVSVXXXXXX 205
E + + + + L K+ + + Q K + ++KT
Sbjct: 151 EEEEESEEESEEEVPIVNKKSSLSKKSIISESDDELLLQTVNKKSTTKEKTSKPTTTTTT 210
Query: 206 XXXXXXXXXGFVETKRD--ELVRKGILTPFHKLKGFERCIQQPGPSNKQNVPDEQEARSN 263
+T+ + E K I P K+ ++ IQ+ S ++ E++ +
Sbjct: 211 TTTKTTTKDDTTDTEEEYSEEDIKPIKKPVSKVT--KKQIQESEGSEEEISDSEEDIKQE 268
Query: 264 DPFSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRPFQRLKTPFRMPQSEESEVE 323
+ S S + ++ +P T L+ + K PT + +SEE E
Sbjct: 269 EEKSESSEEDIKPKRLTRLRKPITTTLNTTTKKK---PT---------LILSESEEEEES 316
Query: 324 XXXXXXXXXXXXXXXXXXXXXIAREDTRLEENEDSRDSLDMSSYXXXXXXXXXXXXXXXP 383
E+ EE E+ +++D S
Sbjct: 317 DGSIYQEESDDYQEEEEE-----EEEEEEEEEEEEEENIDPSKMVDQLNGFLKYKEKSIY 371
Query: 384 PFVTL--EGG-LKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSF 440
T EG K+ + I++ L+ YQ+ GV WLW L C+ AGGI+GD+MGLGKT+Q+ SF
Sbjct: 372 INSTKSKEGKYFKMKDKIYDGLYWYQRDGVNWLWNLFCRHAGGILGDDMGLGKTMQICSF 431
Query: 441 LGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLH 482
L ++H +++V PV L+ W +E ++ P + V + H
Sbjct: 432 LNSMHSQGHISHTLLVMPVGLIEHWLKEFNRFNPKYLVRVFH 473
Score = 229 (85.7 bits), Expect = 6.1e-77, Sum P(5) = 6.1e-77
Identities = 56/150 (37%), Positives = 83/150 (55%)
Query: 528 INRVLRSESGLLITTYEQLRLLGEKLLD-----VEWGYAVLDEGHRIRNPNAEISLVCKQ 582
+ RV+ +E G++ITTY + + +++ W Y +LDEGH+I+ +IS +
Sbjct: 484 LKRVM-NEGGIIITTYGMVVSNVDSMIENGRKSFIWDYVILDEGHKIKETKTQISKTMHR 542
Query: 583 LQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKL-GVLPVFEAEFAVPITVGGYANASPLQ 641
H+II+TG IQN L ELW+LFD+V L G + F A F+ PI +++S Q
Sbjct: 543 FNAKHKIILTGTAIQNNLRELWALFDWVCGSTLLGSVRNFTANFSKPIIKAHTSDSSQDQ 602
Query: 642 VSTAYRCAVVLRDLIMPYLLRRMKADVNAQ 671
T A LR++I P+ LRR K DV Q
Sbjct: 603 KITGSAIAEDLRNIIAPHFLRREKKDVFKQ 632
Score = 67 (28.6 bits), Expect = 8.9e-60, Sum P(5) = 8.9e-60
Identities = 28/142 (19%), Positives = 58/142 (40%)
Query: 57 DPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAV 116
D + T +E ++ ++ + V T ++ E+ D + +Q+ + E S
Sbjct: 220 DTTDTEEEYSEEDIKPIKKPVSKV--TKKQIQESEGSEEEISDSEEDIKQEEEKSESSEE 277
Query: 117 QASPNDMT-LQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHR 175
P +T L+ +T L + K K L+ LS + S G + + D +EE
Sbjct: 278 DIKPKRLTRLRKPITTT-LNTTTKKKPTLI--LSESEEEEESDGSIYQEESDDYQEEEEE 334
Query: 176 PKRKSKEAQKPGKDRSKQQKTV 197
+ + +E ++ ++ K V
Sbjct: 335 EEEEEEEEEEEEEENIDPSKMV 356
Score = 45 (20.9 bits), Expect = 6.1e-77, Sum P(5) = 6.1e-77
Identities = 10/65 (15%), Positives = 29/65 (44%)
Query: 1067 APSSVRKKFGSTVGSQLIKPLEGSSSNKTGEFNS---FGAGASAGKVLSSSELLARIRGN 1123
+PS ++V + ++ L+ + +FN ++ + + + IRGN
Sbjct: 1197 SPSKFNSSVNNSVNNSIVIDLDSDEEKENQDFNQSSVLSTTTASTPSMPNIQKATEIRGN 1256
Query: 1124 QENAV 1128
+++++
Sbjct: 1257 KDDSL 1261
Score = 41 (19.5 bits), Expect = 3.9e-31, Sum P(5) = 3.9e-31
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 903 FKARNMKDLFTLNDDGNGGSTETSN 927
F R KD+F ND + + +N
Sbjct: 621 FLRREKKDVFKQNDQPSNNNNNNNN 645
Score = 40 (19.1 bits), Expect = 5.5e-57, Sum P(5) = 5.5e-57
Identities = 23/97 (23%), Positives = 44/97 (45%)
Query: 52 KSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGRED 111
KS I +STS NK++ + + ++ + R+ K D D+D + +E++
Sbjct: 2 KSSKITTTSTS----INKIKPLPPN---KSKSIANKSRIK-KIDIDLDSEEESEEEIISA 53
Query: 112 EKSAVQASPNDMTLQHALTADRLKSLK--KTKAQLVK 146
+K + + T + TA + +LK +TK K
Sbjct: 54 KKKSSTTTTTKTTAKTTTTATKT-NLKDNQTKGSFDK 89
Score = 38 (18.4 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 506 GSHDSDYEGNLSSRNPKKWDLLINRVLRSE 535
G+ D E + R K ++ L+NR SE
Sbjct: 1255 GNKDDSLE---TIRKQKNFNFLVNRAKESE 1281
Score = 37 (18.1 bits), Expect = 6.1e-77, Sum P(5) = 6.1e-77
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 971 EIG-SSRRKGKEKVDNIGD 988
++G S+RKG E ++ + D
Sbjct: 1150 DVGLGSKRKGNEPIEILDD 1168
>UNIPROTKB|A6QQR4 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9913 "Bos taurus" [GO:0000777 "condensed chromosome
kinetochore" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005 PROSITE:PS50293
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0051301
GO:GO:0007067 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000777 EMBL:BC149963 EMBL:BT026201 IPI:IPI00694211
RefSeq:NP_001096000.1 UniGene:Bt.74729 ProteinModelPortal:A6QQR4
STRING:A6QQR4 PRIDE:A6QQR4 Ensembl:ENSBTAT00000007362 GeneID:782916
KEGG:bta:782916 CTD:54821 GeneTree:ENSGT00590000083118
HOGENOM:HOG000074172 HOVERGEN:HBG107854 InParanoid:A6QQR4
OMA:TKNGDLE OrthoDB:EOG4FR0RD NextBio:20925771 ArrayExpress:A6QQR4
Uniprot:A6QQR4
Length = 1242
Score = 406 (148.0 bits), Expect = 2.6e-75, Sum P(4) = 2.6e-75
Identities = 83/192 (43%), Positives = 127/192 (66%)
Query: 735 QIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDG 794
QI D E S KM + +LK +D+GH+ L+F+Q++++L+I+E L ++ R+DG
Sbjct: 451 QISDDTLMEESGKMLFLMDLLKKLRDEGHQTLVFSQSRRILNIIERLLKNRHFKILRIDG 510
Query: 795 -LTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARE 853
+T + +R I + + D +F+LTT+VGG+G LT A+RV+IFDP WNP+TD QA +
Sbjct: 511 TITHLVEREKRISLFQQNKDYSVFLLTTQVGGVGLTLTAASRVVIFDPSWNPATDAQAVD 570
Query: 854 RAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL---KNPQQRRFFKARNMKD 910
R +RIGQK++V VYRLIT GT+EEK+Y RQ++K L + KNP R+F + +++
Sbjct: 571 RVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNPF--RYFSKQELRE 628
Query: 911 LFTLNDDGNGGS 922
LFT+ D N +
Sbjct: 629 LFTIEDFQNSAT 640
Score = 245 (91.3 bits), Expect = 2.6e-75, Sum P(4) = 2.6e-75
Identities = 52/152 (34%), Positives = 86/152 (56%)
Query: 532 LRSESGLLITTYEQLRLLGEKLLDVE-----WGYAVLDEGHRIRNPNAEISLVCKQLQTV 586
++ +G++ITTY+ L ++L + W Y +LDE H+I++ + + ++ + +
Sbjct: 191 IQQRNGVIITTYQMLINNWQQLSSLNGQEFLWDYVILDEAHKIKSSSTKSAICARAIPAS 250
Query: 587 HRIIMTGAPIQNKLSELWSLFDFVFPGKL-GVLPVFEAEFAVPITVGGYANASPLQVSTA 645
+RI++TG PIQN L ELWSLFDF G L G L F+ E+ PIT +A+P + +
Sbjct: 251 NRILLTGTPIQNNLQELWSLFDFACQGSLLGTLRTFKMEYENPITRAREKDATPGEKALG 310
Query: 646 YRCAVVLRDLIMPYLLRRMKADVNAQLPKKTE 677
++ + L +I PY LRR K +V + E
Sbjct: 311 FKISENLMAIIKPYFLRRTKEEVQKKKSSNPE 342
Score = 202 (76.2 bits), Expect = 2.6e-75, Sum P(4) = 2.6e-75
Identities = 35/98 (35%), Positives = 62/98 (63%)
Query: 391 GLKIPESIFNNLFDYQKVGVQWLWELHCQ-RAGGIIGDEMGLGKTIQVLSFLGALHFSNM 449
GL + + + N L++YQK G+ +L+ L+ R GGI+ D+MGLGKT+Q+++FL + +++
Sbjct: 85 GLLLYQELHNQLYEYQKEGIAFLYSLYRDGRRGGILADDMGLGKTVQIIAFLSGMFDASL 144
Query: 450 YKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQD 487
+++ P +L+ W RE KW P V+ H ++D
Sbjct: 145 VNHVLLIMPTSLISTWLREFVKWTPGMRVKTFHGPSKD 182
Score = 101 (40.6 bits), Expect = 2.6e-75, Sum P(4) = 2.6e-75
Identities = 19/69 (27%), Positives = 42/69 (60%)
Query: 672 LPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLERE 731
L +K + +++ L Q +YR F++ ++++L +R+ L + V++K+C+HP LL
Sbjct: 361 LSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLLSA- 419
Query: 732 QSCQIPDYG 740
++C + + G
Sbjct: 420 RACGLLNLG 428
Score = 37 (18.1 bits), Expect = 5.8e-32, Sum P(2) = 5.8e-32
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 64 EKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDS--TEQDGREDEKSA 115
++L + R+ E+G + DH R +S + ++ G + + QD E E S+
Sbjct: 391 KELLMETRSPLAELGVLKKLCDHPRLLSARACGLLNLGAAKFSVQDEIEGEDSS 444
Score = 37 (18.1 bits), Expect = 1.9e-30, Sum P(3) = 1.9e-30
Identities = 13/37 (35%), Positives = 15/37 (40%)
Query: 695 FLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLERE 731
FL E E L GS + V K C DL E +
Sbjct: 965 FLEHVEKENSLCGSAANSRAESVHSKACLSVDLSEED 1001
Score = 37 (18.1 bits), Expect = 4.4e-10, Sum P(2) = 4.4e-10
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 483 DSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNP 521
D +++ K R K+ D+D E H + SS NP
Sbjct: 1002 DEPEEVVNVKIRRKARRIDSDNEDEHTFK---DTSSTNP 1037
>MGI|MGI:1923501 [details] [associations]
symbol:Ercc6l2 "excision repair cross-complementing rodent
repair deficiency, complementation group 6 like 2" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005856
"cytoskeleton" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1923501
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003677
GO:GO:0006281 GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 CTD:375748 HOGENOM:HOG000074171
HOVERGEN:HBG108393 OMA:HGNRKDN EMBL:AK002307 EMBL:AK082850
EMBL:AC154248 EMBL:AF217319 EMBL:BC032964 IPI:IPI00403243
IPI:IPI00754737 IPI:IPI00857027 RefSeq:NP_075996.2
UniGene:Mm.186610 ProteinModelPortal:Q9JIM3 SMR:Q9JIM3 PRIDE:Q9JIM3
Ensembl:ENSMUST00000021926 Ensembl:ENSMUST00000067821 GeneID:76251
KEGG:mmu:76251 UCSC:uc007qyb.2 UCSC:uc007qyc.2 NextBio:344851
Bgee:Q9JIM3 CleanEx:MM_0610007P08RIK Genevestigator:Q9JIM3
Uniprot:Q9JIM3
Length = 699
Score = 430 (156.4 bits), Expect = 3.4e-75, Sum P(2) = 3.4e-75
Identities = 84/207 (40%), Positives = 138/207 (66%)
Query: 704 ILDGSRNSLYGIDVMRKICNH-----PDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVW 758
+L + S + V+++IC+ PD +++ + +P+ S KMKV+ Q+L +
Sbjct: 459 LLQAASTSKHQETVIKRICDRVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHF 518
Query: 759 KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFI 818
+ Q +VLLF+ + ++LD+L+ + +ASG +YRR+DG T ++R+ ++ E+N+S DV I +
Sbjct: 519 RKQRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSSQDVNICL 578
Query: 819 LTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEK 878
++T GGLG N GAN VI+FDP WNP+ D+QA +RA+RIGQ +DV V RLI+ GT+EE
Sbjct: 579 VSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIGQCRDVKVLRLISLGTVEEI 638
Query: 879 VYHRQIYKHFLTNKILKNPQQRRFFKA 905
+Y RQ+YK L ++ + +R+F+A
Sbjct: 639 MYLRQVYKQQLHCVVVGSENAKRYFEA 665
Score = 409 (149.0 bits), Expect = 3.4e-75, Sum P(2) = 3.4e-75
Identities = 113/340 (33%), Positives = 178/340 (52%)
Query: 385 FVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA- 443
F E G IP +I L DYQ+ G Q+L+ + + G I+GD+MGLGKTIQV+SFL A
Sbjct: 105 FQLSEDGDSIPYTINRYLRDYQREGAQFLYRHYIEGRGCILGDDMGLGKTIQVISFLAAV 164
Query: 444 LHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVEL-LHDSAQDLGFRKKRAKSSDTDN 502
LH + P LL+ K++ PS ++ L + + + K + D
Sbjct: 165 LHKKGTREDIENNMPEFLLKSMKKKP----PSTAKKMFLIVAPLSVLYNWK----DELDT 216
Query: 503 DGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAV 562
G + + + K +LL R+ + + + +TTYE LRL E+L +EW +
Sbjct: 217 WGY------FRVTVLHGSKKDNELL--RLKQRKCEIALTTYETLRLCLEELNSLEWSAII 268
Query: 563 LDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFE 622
+DE HRI+NP A ++ V K ++ RI +TG +QN + ELW + D+ PG LG F+
Sbjct: 269 VDEAHRIKNPKARVTEVMKAVKCKVRIGLTGTVLQNNMKELWCVMDWAVPGLLGSRIHFK 328
Query: 623 AEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFC 682
+F+ P+ G A+ +++T + L + + LRR K + QLPKK + +++C
Sbjct: 329 KQFSDPVEHGQRHTATKRELATGRKAMHRLAKKMSGWFLRRTKTLIKGQLPKKEDRMVYC 388
Query: 683 SLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKIC 722
SLT+ Q+AVY+ L + +V IL S+ G R+ C
Sbjct: 389 SLTDFQKAVYQTVLETEDVALILTSSQPCTCGSGQKRRKC 428
>UNIPROTKB|Q2NKX8 [details] [associations]
symbol:ERCC6L "DNA excision repair protein ERCC-6-like"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0051301 "cell division" evidence=IEA]
[GO:0000777 "condensed chromosome kinetochore" evidence=IEA]
[GO:0000087 "M phase of mitotic cell cycle" evidence=TAS]
[GO:0000236 "mitotic prometaphase" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR011990
InterPro:IPR013026 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_115566 Reactome:REACT_21300
GO:GO:0051301 GO:GO:0003677 Gene3D:1.25.40.10 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000236 GO:GO:0000777 CTD:54821 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OMA:TKNGDLE EMBL:EU069463 EMBL:BC008808
EMBL:BC111486 EMBL:AK000112 EMBL:AK074719 EMBL:AY121802
IPI:IPI00552569 RefSeq:NP_060139.2 UniGene:Hs.47558
ProteinModelPortal:Q2NKX8 SMR:Q2NKX8 IntAct:Q2NKX8 STRING:Q2NKX8
PhosphoSite:Q2NKX8 DMDM:121948339 PaxDb:Q2NKX8 PeptideAtlas:Q2NKX8
PRIDE:Q2NKX8 DNASU:54821 Ensembl:ENST00000334463 GeneID:54821
KEGG:hsa:54821 UCSC:uc004eap.1 GeneCards:GC0XM071424
H-InvDB:HIX0016867 HGNC:HGNC:20794 HPA:HPA050492 MIM:300687
neXtProt:NX_Q2NKX8 PharmGKB:PA162385290 InParanoid:Q2NKX8
GenomeRNAi:54821 NextBio:57573 ArrayExpress:Q2NKX8 Bgee:Q2NKX8
CleanEx:HS_ERCC6L Genevestigator:Q2NKX8 Uniprot:Q2NKX8
Length = 1250
Score = 403 (146.9 bits), Expect = 3.6e-75, Sum P(4) = 3.6e-75
Identities = 82/186 (44%), Positives = 125/186 (67%)
Query: 735 QIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDG 794
Q+ D E S KM + +LK +D+GH+ L+F+Q++Q+L+I+E L ++ R+DG
Sbjct: 449 QVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDG 508
Query: 795 -LTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARE 853
+T + +R I+ + + D +F+LTT+VGG+G LT A RV+IFDP WNP+TD QA +
Sbjct: 509 TVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVD 568
Query: 854 RAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL---KNPQQRRFFKARNMKD 910
R +RIGQK++V VYRLIT GT+EEK+Y RQ++K L + KNP R+F + +++
Sbjct: 569 RVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPF--RYFSKQELRE 626
Query: 911 LFTLND 916
LFT+ D
Sbjct: 627 LFTIED 632
Score = 252 (93.8 bits), Expect = 3.6e-75, Sum P(4) = 3.6e-75
Identities = 54/156 (34%), Positives = 88/156 (56%)
Query: 528 INRVLRSESGLLITTYEQL-----RLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQ 582
+NR+ + +G++ITTY+ L +L + + W Y +LDE H+I+ + + ++ +
Sbjct: 188 LNRI-QQRNGVIITTYQMLINNWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARA 246
Query: 583 LQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKL-GVLPVFEAEFAVPITVGGYANASPLQ 641
+ +R+++TG PIQN L ELWSLFDF G L G L F+ E+ PIT +A+P +
Sbjct: 247 IPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGE 306
Query: 642 VSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTE 677
+ ++ + L +I PY LRR K DV + E
Sbjct: 307 KALGFKISENLMAIIKPYFLRRTKEDVQKKKSSNPE 342
Score = 194 (73.4 bits), Expect = 3.6e-75, Sum P(4) = 3.6e-75
Identities = 34/98 (34%), Positives = 60/98 (61%)
Query: 391 GLKIPESIFNNLFDYQKVGVQWLWELHCQ-RAGGIIGDEMGLGKTIQVLSFLGALHFSNM 449
GL + + N LF++QK G+ +L+ L+ R GGI+ D+MGLGKT+Q+++FL + +++
Sbjct: 85 GLLLYRELHNQLFEHQKEGIAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDASL 144
Query: 450 YKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQD 487
+++ P L+ W +E KW P V+ H ++D
Sbjct: 145 VNHVLLIMPTNLINTWVKEFIKWTPGMRVKTFHGPSKD 182
Score = 104 (41.7 bits), Expect = 3.6e-75, Sum P(4) = 3.6e-75
Identities = 22/79 (27%), Positives = 44/79 (55%)
Query: 661 LRRMKADVNA--QLP---KKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGI 715
L DV+A ++P +K + +++ L Q +YR F++ ++++L +R+ L +
Sbjct: 345 LNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAEL 404
Query: 716 DVMRKICNHPDLLEREQSC 734
V++K+C+HP LL C
Sbjct: 405 GVLKKLCDHPRLLSARACC 423
Score = 54 (24.1 bits), Expect = 2.1e-33, Sum P(2) = 2.1e-33
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 64 EKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKS 114
++L + R+ E+G + DH R +S + ++ G + QDG E E S
Sbjct: 391 KELLMETRSPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGNEGEDS 441
>TAIR|locus:2024198 [details] [associations]
symbol:SWI2 "switch 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0016020 "membrane"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GO:GO:0005524 GO:GO:0016020 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:HGNRKDN
IPI:IPI00529418 RefSeq:NP_171871.2 UniGene:At.42525
UniGene:At.42526 ProteinModelPortal:F4I2H2 SMR:F4I2H2 PRIDE:F4I2H2
EnsemblPlants:AT1G03750.1 GeneID:839417 KEGG:ath:AT1G03750
Uniprot:F4I2H2
Length = 862
Score = 425 (154.7 bits), Expect = 2.0e-73, Sum P(3) = 2.0e-73
Identities = 82/197 (41%), Positives = 129/197 (65%)
Query: 738 DYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTP 797
D + + KM+ + +++ W +G ++LLF+ + +MLDILE FLI GY + R+DG TP
Sbjct: 520 DLSDVKHCGKMRALEKLMASWISKGDKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTP 579
Query: 798 VKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWR 857
R +L+D++N S +F+++TK GGLG NL ANRV+IFDP+WNPS D+QA++R++R
Sbjct: 580 TNLRQSLVDDFNASPSKQVFLISTKAGGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFR 639
Query: 858 IGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDD 917
GQK+ V V+RL++ G++EE VY RQ+YK L+N + + R+F+ ++D +
Sbjct: 640 YGQKRHVVVFRLLSAGSLEELVYTRQVYKQQLSNIAVAGKMETRYFEG--VQDCKEFQGE 697
Query: 918 GNGGSTETSNIFSQLSE 934
G SN+F LS+
Sbjct: 698 LFG----ISNLFRDLSD 710
Score = 265 (98.3 bits), Expect = 2.0e-73, Sum P(3) = 2.0e-73
Identities = 57/199 (28%), Positives = 107/199 (53%)
Query: 525 DLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQ 584
D+++ ++ +L+T+++ R+ G L + W + DE HR++N +++ C +++
Sbjct: 235 DMILEKLKARGVEVLVTSFDTFRIQGPVLSGINWEIVIADEAHRLKNEKSKLYEACLEIK 294
Query: 585 TVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVST 644
T RI +TG +QNK+SEL++LF++V PG LG F + P+ +G A A V
Sbjct: 295 TKKRIGLTGTVMQNKISELFNLFEWVAPGSLGTREHFRDFYDEPLKLGQRATAPERFVQI 354
Query: 645 AYRCAVVLRDLIMPYLLRRMKADVNAQLPK-KTEHVLFCSLTEEQRAVYRAFLASSEVEQ 703
A + L L+ Y+LRR K + L K ++V+FC +++ QR VY+ + E++
Sbjct: 355 ADKRKQHLGSLLRKYMLRRTKEETIGHLMMGKEDNVVFCQMSQLQRRVYQRMIQLPEIQC 414
Query: 704 ILDGSRNSLYGIDVMRKIC 722
+++ G + + C
Sbjct: 415 LVNKDNPCACGSPLKQSEC 433
Score = 187 (70.9 bits), Expect = 2.0e-73, Sum P(3) = 2.0e-73
Identities = 37/116 (31%), Positives = 67/116 (57%)
Query: 392 LKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH------ 445
+ +P SI L ++Q+ GV++++ L+ GGI+GD+MGLGKTIQ ++FL A++
Sbjct: 129 IHVPASINCRLLEHQREGVKFMYNLYKNNHGGILGDDMGLGKTIQTIAFLAAVYGKDGDA 188
Query: 446 -----FSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAK 496
+ P +++CP +++ W+ E +W F V + H S +D+ K +A+
Sbjct: 189 GESCLLESDKGPVLIICPSSIIHNWESEFSRWASFFKVSVYHGSNRDMILEKLKAR 244
Score = 42 (19.8 bits), Expect = 3.1e-58, Sum P(3) = 3.1e-58
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 150 HFPKGITSKGIEHD----KFIQDLVKEEH 174
H P I + +EH KF+ +L K H
Sbjct: 130 HVPASINCRLLEHQREGVKFMYNLYKNNH 158
>RGD|1565734 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent repair
deficiency complementation group 6 - like" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1565734 GO:GO:0005524 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
OrthoDB:EOG4FR0RD EMBL:CH473966 IPI:IPI00362012
RefSeq:NP_001092144.1 UniGene:Rn.72855 Ensembl:ENSRNOT00000004310
GeneID:317252 KEGG:rno:317252 UCSC:RGD:1565734 NextBio:671491
Uniprot:D4A0G9
Length = 1230
Score = 388 (141.6 bits), Expect = 1.0e-72, Sum P(4) = 1.0e-72
Identities = 78/178 (43%), Positives = 122/178 (68%)
Query: 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDG-LTPVKQR 801
+ S KM + +L+ +D+GH+ L+F+Q++Q+L+I+E L ++ R+DG +T + +R
Sbjct: 459 QESGKMIFLMALLERLQDEGHQTLVFSQSRQILNIIERLLKNKHFKTLRIDGTVTHLWER 518
Query: 802 MALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQK 861
I + + + +F+LTT+VGG+G LT A+RV+IFDP WNP+TD QA +R +RIGQK
Sbjct: 519 EKRIQLFQQNKEYSVFLLTTQVGGVGLTLTAASRVVIFDPSWNPATDAQAVDRVYRIGQK 578
Query: 862 QDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL---KNPQQRRFFKARNMKDLFTLND 916
++V VYRLIT GT+EEK+Y RQ++K L + KNP R+F + +K+LFT+ D
Sbjct: 579 ENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNPF--RYFTKQELKELFTVGD 634
Score = 246 (91.7 bits), Expect = 1.0e-72, Sum P(4) = 1.0e-72
Identities = 56/167 (33%), Positives = 95/167 (56%)
Query: 517 SSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVE-----WGYAVLDEGHRIRN 571
SS+N + +L R+ + +G++ITTY+ L ++L W Y +LDE H+I++
Sbjct: 179 SSKNERIRNL--TRI-QQRNGVVITTYQMLLNNWQQLASFNGQAFVWDYVILDEAHKIKS 235
Query: 572 PNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKL-GVLPVFEAEFAVPIT 630
+ + ++ + + +R+++TG PIQN L ELWSLFDF G L G L F+ E+ PI
Sbjct: 236 ASTKSAVCARAVPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPII 295
Query: 631 VGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTE 677
+A+P + + ++ + L ++I PY LRR K +V+ + K E
Sbjct: 296 RAREKDATPGEKALGFKMSENLMEIIKPYFLRRTKEEVHMKKADKPE 342
Score = 194 (73.4 bits), Expect = 1.0e-72, Sum P(4) = 1.0e-72
Identities = 33/98 (33%), Positives = 61/98 (62%)
Query: 391 GLKIPESIFNNLFDYQKVGVQWLWELHCQ-RAGGIIGDEMGLGKTIQVLSFLGALHFSNM 449
GL + ++ LF++QK G+ +L+ L+ R GGI+ D+MGLGKT+Q+++FL + +++
Sbjct: 85 GLLLYRELYEKLFEHQKEGIAFLYSLYKNGRKGGILADDMGLGKTVQIIAFLSGMFDASL 144
Query: 450 YKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQD 487
+++ P L+ W +E KW P V+ H S+++
Sbjct: 145 VNHVLLIMPTNLINTWVKEFAKWTPGMRVKTFHGSSKN 182
Score = 102 (41.0 bits), Expect = 1.0e-72, Sum P(4) = 1.0e-72
Identities = 19/69 (27%), Positives = 42/69 (60%)
Query: 672 LPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLERE 731
L +K + +++ L Q +YR F++ ++++L +R+ L + V++K+C+HP LL
Sbjct: 361 LTRKNDLIVWIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLLSA- 419
Query: 732 QSCQIPDYG 740
++C + + G
Sbjct: 420 RACHLLNLG 428
Score = 42 (19.8 bits), Expect = 1.5e-30, Sum P(2) = 1.5e-30
Identities = 17/64 (26%), Positives = 30/64 (46%)
Query: 64 EKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDM 123
++L + R+ E+G + DH R +S + + ++ G T EDE AS N
Sbjct: 391 KELLMETRSPLAELGVLKKLCDHPRLLSARACHLLNLGTVTFS--AEDENEQEDAS-NMG 447
Query: 124 TLQH 127
++ H
Sbjct: 448 SIDH 451
>UNIPROTKB|E2RGN3 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001890 Uniprot:E2RGN3
Length = 925
Score = 414 (150.8 bits), Expect = 1.3e-72, Sum P(2) = 1.3e-72
Identities = 82/229 (35%), Positives = 147/229 (64%)
Query: 686 EEQRAVYRAFLAS-SEVEQ---ILDGSRNSLYGIDVMRKICNH-----PDLLEREQSCQI 736
E + +Y ++LA +V +L + S ++++IC+ PD +++ +
Sbjct: 377 ETVKTLYFSYLAVLQKVANHVALLQSASTSKQQETLIKRICDQVFSKFPDFVQKSKDASF 436
Query: 737 PDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLT 796
+P+ S KMKV+ Q+L + ++LLF+ + ++LD+L+ + +A+G++YRR+DG T
Sbjct: 437 ETLSDPKYSGKMKVLQQLLNHCRKNKDKILLFSFSTKLLDVLQQYCMAAGFDYRRLDGST 496
Query: 797 PVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAW 856
++R+ ++ E+N++ DV I +++T GG+G N GAN V++FDP WNP+ D+QA +RA+
Sbjct: 497 KSEERIKIVKEFNSTQDVNICLVSTMAGGVGLNFVGANVVVLFDPTWNPANDLQAIDRAY 556
Query: 857 RIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKA 905
RIGQ +DV V+RLI+ GT+EE +Y RQ+YK L ++ + +R+F+A
Sbjct: 557 RIGQCRDVKVFRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAKRYFEA 605
Score = 410 (149.4 bits), Expect = 1.3e-72, Sum P(2) = 1.3e-72
Identities = 110/319 (34%), Positives = 167/319 (52%)
Query: 391 GLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA-LHFSNM 449
G IP +I L DYQ+ G Q+L+ Q G I+GD+MGLGKT+QV+SFL A LH
Sbjct: 50 GDSIPYTINRYLRDYQREGAQFLYAHFIQGKGCILGDDMGLGKTVQVISFLAAVLHKKGT 109
Query: 450 YKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHD 509
+ P LLR K+E PS + + L DT G
Sbjct: 110 REDIENNMPEFLLRSMKKEP----PSSTAKKMFLIVAPLSVLYNWRDELDT----WGY-- 159
Query: 510 SDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRI 569
+ + N K +L+ RV + + + +TTYE LRL ++L +EW ++DE H+I
Sbjct: 160 --FRVTILHGNKKDNELV--RVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHKI 215
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629
+NP A ++ V K L+ RI +TG +QN + ELW + D+ PG LG F+ +F+ P+
Sbjct: 216 KNPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPV 275
Query: 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQR 689
G A+ +++T + L ++ + LRR K + QLPKK + +++CSLT+ Q+
Sbjct: 276 EHGQRHTATKRELATGRKAMQRLAKMMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQK 335
Query: 690 AVYRAFLASSEVEQILDGS 708
AVY+ L + +V IL S
Sbjct: 336 AVYQTVLETKDVTLILQSS 354
>UNIPROTKB|F1PQX1 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:AAEX03000489 Ensembl:ENSCAFT00000001906 OMA:QSSQPCT
Uniprot:F1PQX1
Length = 995
Score = 414 (150.8 bits), Expect = 1.9e-72, Sum P(2) = 1.9e-72
Identities = 82/229 (35%), Positives = 147/229 (64%)
Query: 686 EEQRAVYRAFLAS-SEVEQ---ILDGSRNSLYGIDVMRKICNH-----PDLLEREQSCQI 736
E + +Y ++LA +V +L + S ++++IC+ PD +++ +
Sbjct: 439 ETVKTLYFSYLAVLQKVANHVALLQSASTSKQQETLIKRICDQVFSKFPDFVQKSKDASF 498
Query: 737 PDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLT 796
+P+ S KMKV+ Q+L + ++LLF+ + ++LD+L+ + +A+G++YRR+DG T
Sbjct: 499 ETLSDPKYSGKMKVLQQLLNHCRKNKDKILLFSFSTKLLDVLQQYCMAAGFDYRRLDGST 558
Query: 797 PVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAW 856
++R+ ++ E+N++ DV I +++T GG+G N GAN V++FDP WNP+ D+QA +RA+
Sbjct: 559 KSEERIKIVKEFNSTQDVNICLVSTMAGGVGLNFVGANVVVLFDPTWNPANDLQAIDRAY 618
Query: 857 RIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKA 905
RIGQ +DV V+RLI+ GT+EE +Y RQ+YK L ++ + +R+F+A
Sbjct: 619 RIGQCRDVKVFRLISLGTVEEIMYLRQVYKQQLHCVVVGSENAKRYFEA 667
Score = 410 (149.4 bits), Expect = 1.9e-72, Sum P(2) = 1.9e-72
Identities = 110/319 (34%), Positives = 167/319 (52%)
Query: 391 GLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA-LHFSNM 449
G IP +I L DYQ+ G Q+L+ Q G I+GD+MGLGKT+QV+SFL A LH
Sbjct: 112 GDSIPYTINRYLRDYQREGAQFLYAHFIQGKGCILGDDMGLGKTVQVISFLAAVLHKKGT 171
Query: 450 YKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHD 509
+ P LLR K+E PS + + L DT G
Sbjct: 172 REDIENNMPEFLLRSMKKEP----PSSTAKKMFLIVAPLSVLYNWRDELDT----WGY-- 221
Query: 510 SDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRI 569
+ + N K +L+ RV + + + +TTYE LRL ++L +EW ++DE H+I
Sbjct: 222 --FRVTILHGNKKDNELV--RVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHKI 277
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629
+NP A ++ V K L+ RI +TG +QN + ELW + D+ PG LG F+ +F+ P+
Sbjct: 278 KNPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSRIHFKKQFSDPV 337
Query: 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQR 689
G A+ +++T + L ++ + LRR K + QLPKK + +++CSLT+ Q+
Sbjct: 338 EHGQRHTATKRELATGRKAMQRLAKMMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQK 397
Query: 690 AVYRAFLASSEVEQILDGS 708
AVY+ L + +V IL S
Sbjct: 398 AVYQTVLETKDVTLILQSS 416
>UNIPROTKB|F1S4L1 [details] [associations]
symbol:ERCC6L2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 OMA:HGNRKDN EMBL:CU855584
Ensembl:ENSSSCT00000011974 Uniprot:F1S4L1
Length = 928
Score = 402 (146.6 bits), Expect = 3.0e-72, Sum P(4) = 3.0e-72
Identities = 84/233 (36%), Positives = 144/233 (61%)
Query: 686 EEQRAVYRAFLAS-SEVEQ---ILDGSRNSLYGIDVMRKICNH-----PDLLEREQSCQI 736
E + +Y ++LA +V +L + S ++++IC+ PD +++ +
Sbjct: 373 ESVKTLYFSYLAVLQKVANHVALLQAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAF 432
Query: 737 PDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLT 796
+P+ S KMKV+ Q+L + +VLLF+ + ++LD+L+ + +ASG +YRR+DG T
Sbjct: 433 ETLSDPKYSGKMKVLQQLLNHCRKNKDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGST 492
Query: 797 PVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAW 856
++R+ ++ E+N++ DV I +++T GGLG N GAN V++FDP WNP+ D+QA +RA+
Sbjct: 493 KSEERIKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAY 552
Query: 857 RIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMK 909
RIGQ +DV V RLI+ GT+EE +Y RQ+YK L ++ + +R+ + K
Sbjct: 553 RIGQCRDVKVLRLISLGTVEEIMYLRQLYKQQLHCVVVGSENAKRYEAVQGSK 605
Score = 311 (114.5 bits), Expect = 3.0e-72, Sum P(4) = 3.0e-72
Identities = 71/187 (37%), Positives = 109/187 (58%)
Query: 522 KKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCK 581
KK + LI RV + + + +TTYE LRL ++L +EW ++DE HRI+NP A I+ V K
Sbjct: 165 KKDNELI-RVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARITEVMK 223
Query: 582 QLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQ 641
L+ RI +TG +QN + ELW + D+ PG LG F+ F+ P+ G A+ +
Sbjct: 224 ALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSEIHFKKHFSDPVEHGQRHTATKRE 283
Query: 642 VSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEV 701
++T + L + + LRR K + QLPKK + +++CSLT+ Q+AVY+ L + +V
Sbjct: 284 LATGRKAMQRLAIKMSGWFLRRTKILIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDV 343
Query: 702 EQILDGS 708
IL S
Sbjct: 344 SLILQSS 350
Score = 138 (53.6 bits), Expect = 3.0e-72, Sum P(4) = 3.0e-72
Identities = 30/60 (50%), Positives = 39/60 (65%)
Query: 385 FVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL 444
F E G IP +I L DYQ+ G Q+L+ Q G I+GD+MGLGKT+QV+SFL A+
Sbjct: 44 FQLSEDGASIPYTINRYLRDYQREGAQFLYGHFIQGRGCILGDDMGLGKTVQVISFLAAV 103
Score = 64 (27.6 bits), Expect = 3.0e-72, Sum P(4) = 3.0e-72
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 454 IVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQD 487
++V P+++L W+ E + W F V +LH + +D
Sbjct: 135 LIVAPLSVLYNWRDELDTW-GYFRVTILHGNKKD 167
Score = 40 (19.1 bits), Expect = 8.7e-06, Sum P(3) = 8.7e-06
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 1017 NAHDEEKMRLEEQASQVAQRAAEALR 1042
N D E +R++++ ++A E LR
Sbjct: 164 NKKDNELIRVKQRKCEIALTTYETLR 189
>UNIPROTKB|G5E5P9 [details] [associations]
symbol:LOC789977 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 OMA:HGNRKDN EMBL:DAAA02024017
EMBL:DAAA02024018 EMBL:DAAA02024019 EMBL:DAAA02024020
EMBL:DAAA02024021 EMBL:DAAA02024022 Ensembl:ENSBTAT00000027486
Uniprot:G5E5P9
Length = 908
Score = 412 (150.1 bits), Expect = 3.6e-72, Sum P(3) = 3.6e-72
Identities = 113/341 (33%), Positives = 176/341 (51%)
Query: 384 PFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA 443
PF E G IP +I L DYQ+ G Q+L+ Q G I+GD+MGLGKT+QV+SFL A
Sbjct: 43 PFQLSENGDSIPYTINRYLRDYQREGAQFLYGHFIQGRGCILGDDMGLGKTVQVISFLAA 102
Query: 444 LHFSNMYKPSIVV-CPVTLLRQWKREAEKWYPSFHVEL-LHDSAQDLGFRKKRAKSSDTD 501
+ + I P LLR K++ PS ++ L + + + K + D
Sbjct: 103 VLGKKGTREDIENNMPEFLLRNMKKDP----PSTAKKMFLIVAPLSVLYNWK----DELD 154
Query: 502 NDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYA 561
G + + N K +L+ RV + + + +TTYE LRL ++L +EW
Sbjct: 155 TWGY------FRVTILHGNKKDSELI--RVKQRKCEIALTTYETLRLCLDELNSLEWSAV 206
Query: 562 VLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVF 621
++DE HRI+NP A ++ + K L+ RI +TG +QN + ELW + D+ PG LG F
Sbjct: 207 IVDEAHRIKNPKARVTEIMKALRCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSRIHF 266
Query: 622 EAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLF 681
+ +F+ P+ G A+ +++T + L + + LRR K + QLPKK + +++
Sbjct: 267 KKQFSDPVEHGQRHTATKRELATGRKAMQRLARKMSGWFLRRTKTLIKDQLPKKEDRMVY 326
Query: 682 CSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKIC 722
CSLT+ Q+AVY+ L + +V IL S R+ C
Sbjct: 327 CSLTDFQKAVYQTVLETEDVSLILQSSEPCTCNSGQKRRNC 367
Score = 410 (149.4 bits), Expect = 3.6e-72, Sum P(3) = 3.6e-72
Identities = 78/194 (40%), Positives = 131/194 (67%)
Query: 717 VMRKICNH-----PDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQT 771
++++IC+ PD +++ + +P+ S KMKV+ Q+L + +VLLF+ +
Sbjct: 411 LIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNKDKVLLFSFS 470
Query: 772 QQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLT 831
++LD+L+ + +ASG +YRR+DG T ++R+ ++ E+N++ DV I +++T GGLG N
Sbjct: 471 TKLLDVLQQYCMASGLDYRRLDGSTKSEERIKIVKEFNSTQDVNICLVSTMAGGLGLNFV 530
Query: 832 GANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTN 891
GAN V++FDP WNP+ D+QA +RA+RIGQ +DV V RLI+ GT+EE +Y RQ+YK L
Sbjct: 531 GANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQVYKQQLHC 590
Query: 892 KILKNPQQRRFFKA 905
++ + +R+F+A
Sbjct: 591 VVVGSENAKRYFEA 604
Score = 46 (21.3 bits), Expect = 3.6e-72, Sum P(3) = 3.6e-72
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 285 PSTKLLDPESLPKLDGPTRPFQRLKTPFRMPQSEES 320
P +L + E L K P R F PF++ ++ +S
Sbjct: 17 PLKRLQEDEDLEKPYFPDRKFPSSAVPFQLSENGDS 52
>UNIPROTKB|G4NCV5 [details] [associations]
symbol:MGG_01012 "ISWI chromatin-remodeling complex ATPase
ISW2" species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CM001235 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
SUPFAM:SSF101224 RefSeq:XP_003717932.1 EnsemblFungi:MGG_01012T0
GeneID:2674262 KEGG:mgr:MGG_01012 Uniprot:G4NCV5
Length = 1128
Score = 619 (223.0 bits), Expect = 4.2e-72, Sum P(3) = 4.2e-72
Identities = 153/396 (38%), Positives = 220/396 (55%)
Query: 526 LLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQT 585
L+ R++ + IT+YE + L W Y ++DE HRI+N + ++ V + +
Sbjct: 276 LIAERLVDESFDVCITSYEMILREKSHLKKFAWEYIIIDEAHRIKNEESSLAQVIRLFNS 335
Query: 586 VHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTA 645
+R+++TG P+QN + ELW+L +F+ P G F+ F+ G S V
Sbjct: 336 RNRLLITGTPLQNNIHELWALLNFLLPDVFGDSEAFDQWFS------GEGQDSDTVVQQL 389
Query: 646 YRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQI- 704
+R VLR P+LLRR+KADV L K E L+ +TE QR Y+ L +++ +
Sbjct: 390 HR---VLR----PFLLRRVKADVEKSLLPKKEVNLYLKMTEMQRTWYQKIL-EKDIDAVN 441
Query: 705 -LDGSRNS---LYGIDV-MRKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVL 755
+G R S L I + +RK CNHP L E + P Y E S KM V+ ++L
Sbjct: 442 GANGKRESKTRLLNIVMQLRKCCNHPYLFEGAEPG--PPYTTDEHLVYNSGKMVVLDKLL 499
Query: 756 KVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDV 814
K K QG RVL+F+Q ++LDILE + + Y+Y R+DG T + R+A IDEYN S+
Sbjct: 500 KRLKAQGSRVLIFSQMSRVLDILEDYCVFREYKYSRIDGGTAHEDRIAAIDEYNKPGSEK 559
Query: 815 FIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGT 874
F+F+LTT+ GGLG NLT A+ VI+FD DWNP D+QA +RA RIGQ + V VYR + T
Sbjct: 560 FVFLLTTRAGGLGINLTTADIVILFDSDWNPQADLQAMDRAHRIGQTKQVYVYRFLVDNT 619
Query: 875 IEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKD 910
IEEKV R K L +++ + + KA KD
Sbjct: 620 IEEKVLERAAQKLHLDRLVIQQGRAQVAAKAAANKD 655
Score = 196 (74.1 bits), Expect = 4.2e-72, Sum P(3) = 4.2e-72
Identities = 40/94 (42%), Positives = 54/94 (57%)
Query: 395 PESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPS 453
P I + DYQ G+ WL LH GI+ DEMGLGKT+Q +SFLG L H + P
Sbjct: 179 PAFIQGTMRDYQIAGLNWLISLHENGISGILADEMGLGKTLQTISFLGYLRHIMGITGPH 238
Query: 454 IVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQD 487
+V+ P + L WKRE KW P +V +L + ++
Sbjct: 239 LVIVPKSTLDNWKREFGKWTPEVNVLVLQGAKEE 272
Score = 42 (19.8 bits), Expect = 4.2e-72, Sum P(3) = 4.2e-72
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 955 ASANADDAVGDKENNLEIGSSRRKGKEKVDN 985
A + DD D+++ L + ++K K V N
Sbjct: 1054 AKRDVDDEENDEDSILGMAPPKKKAKNGVKN 1084
>SGD|S000005831 [details] [associations]
symbol:ISW2 "ATP-dependent DNA translocase involved in
chromatin remodeling" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0006338 "chromatin remodeling"
evidence=IEA;IGI;IMP;IPI] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0060195 "negative
regulation of antisense RNA transcription" evidence=IGI]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0008623
"CHRAC" evidence=ISS;IPI] [GO:0046020 "negative regulation of
transcription from RNA polymerase II promoter by pheromones"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IMP] [GO:0015616 "DNA
translocase activity" evidence=IDA] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006369
"termination of RNA polymerase II transcription" evidence=IGI]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 SGD:S000005831 GO:GO:0005524 EMBL:BK006948
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0003697
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006348
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0008623 GO:GO:0006369 GO:GO:0046020 GO:GO:0060195
GO:GO:0015616 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OrthoDB:EOG48SM27 EMBL:Z75212 PIR:S67208
RefSeq:NP_014948.1 ProteinModelPortal:Q08773 SMR:Q08773
DIP:DIP-6603N IntAct:Q08773 MINT:MINT-469536 STRING:Q08773
PaxDb:Q08773 PeptideAtlas:Q08773 PRIDE:Q08773 EnsemblFungi:YOR304W
GeneID:854480 KEGG:sce:YOR304W CYGD:YOR304w OMA:NEQSALS
NextBio:976792 Genevestigator:Q08773 GermOnline:YOR304W
Uniprot:Q08773
Length = 1120
Score = 604 (217.7 bits), Expect = 6.5e-72, Sum P(4) = 6.5e-72
Identities = 143/397 (36%), Positives = 219/397 (55%)
Query: 525 DLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQ 584
D++ N +L + +LIT+YE + L + W Y V+DE HRI+N + +S + +
Sbjct: 273 DIVRNIILEARFDVLITSYEMVIREKNALKRLAWQYIVIDEAHRIKNEQSALSQIIRLFY 332
Query: 585 TVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVST 644
+ +R+++TG P+QN L ELW+L +F+ P G +F+ F N S
Sbjct: 333 SKNRLLITGTPLQNNLHELWALLNFLLPDIFGDSELFDEWFE--------QNNSEQDQEI 384
Query: 645 AYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQI 704
+ L ++ P+LLRR+KADV L K E ++ +T+ Q Y++ L +++ +
Sbjct: 385 VIQ---QLHSVLNPFLLRRVKADVEKSLLPKIETNVYVGMTDMQIQWYKSLL-EKDIDAV 440
Query: 705 ------LDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQV 754
+G L + +RK CNHP L E + P Y E S KM ++ ++
Sbjct: 441 NGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPG--PPYTTDEHLIFNSGKMIILDKL 498
Query: 755 LKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSD 813
LK K++G RVL+F+Q ++LDILE + +EY R+DG T ++R+ IDEYN +S+
Sbjct: 499 LKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAIDEYNKPNSE 558
Query: 814 VFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRG 873
F+F+LTT+ GGLG NL A+ VI+FD DWNP D+QA +RA RIGQK+ V VYR +T
Sbjct: 559 KFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHVYRFVTEN 618
Query: 874 TIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKD 910
IEEKV R K L +++ ++ N KD
Sbjct: 619 AIEEKVIERAAQKLRLDQLVIQQGTGKKTASLGNSKD 655
Score = 193 (73.0 bits), Expect = 6.5e-72, Sum P(4) = 6.5e-72
Identities = 37/82 (45%), Positives = 52/82 (63%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYK-PSIVVCPVT 460
L DYQ G+ WL LH + GI+ DEMGLGKT+Q +SFLG L + + P +++ P +
Sbjct: 184 LRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFLGYLRYVKQIEGPFLIIVPKS 243
Query: 461 LLRQWKREAEKWYPSFHVELLH 482
L W+RE KW P+ +V +LH
Sbjct: 244 TLDNWRREFLKWTPNVNVLVLH 265
Score = 53 (23.7 bits), Expect = 6.5e-72, Sum P(4) = 6.5e-72
Identities = 31/125 (24%), Positives = 54/125 (43%)
Query: 80 VASTVDHLRRVSTKEDN-----DIDDGDSTEQDGREDEKSAVQASPN--DMTLQHALTAD 132
+ T+D S+ +DN ++ D + + R E A + D+ ++A D
Sbjct: 24 LVDTLDSKSNGSSDDDNIGQSEELSDKEIYTVEDRPPEYWAQRKKKFVLDVDPKYAKQKD 83
Query: 133 RLKSLKKTKAQL-VKEL-SHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDR 190
+ + K+ K L V +L HF GI +K HDK IQ L+K+ K ++
Sbjct: 84 KSDTYKRFKYLLGVTDLFRHFI-GIKAK---HDKNIQKLLKQLDSDANKLSKSHSTVSSS 139
Query: 191 SKQQK 195
S+ +
Sbjct: 140 SRHHR 144
Score = 48 (22.0 bits), Expect = 6.5e-72, Sum P(4) = 6.5e-72
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 983 VDNIGDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALR 1042
+ N G + +EE K+ + G H H+E K R+EE+ ++ +A
Sbjct: 826 IRNEGSDAEEEEGEYKNAANTEG------H----KGHEELKRRIEEEQEKI--NSAPDFT 873
Query: 1043 QSRMLRSRDDIS 1054
Q LR ++ IS
Sbjct: 874 QEDELRKQELIS 885
Score = 48 (22.0 bits), Expect = 1.6e-55, Sum P(3) = 1.6e-55
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 497 SSDTDNDGEGSHDSDYE-GNLSSRNPKKW 524
SSD DN G+ SD E + R P+ W
Sbjct: 35 SSDDDNIGQSEELSDKEIYTVEDRPPEYW 63
Score = 45 (20.9 bits), Expect = 1.3e-71, Sum P(4) = 1.3e-71
Identities = 14/66 (21%), Positives = 30/66 (45%)
Query: 972 IGSSRRKGKEKVDNIGDEVD----EETNILKSLF-----DANGIHSAMNHDAIMNAHDEE 1022
I + + G++ ++NI +D EE + +F + NG + H+ + E
Sbjct: 900 INACAKYGRDDMENIKKSIDSKTPEEVEVYAKIFWERLKEINGWEKYL-HNVELGEKKNE 958
Query: 1023 KMRLEE 1028
K++ +E
Sbjct: 959 KLKFQE 964
Score = 41 (19.5 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 9/52 (17%), Positives = 23/52 (44%)
Query: 729 EREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILES 780
E+E+ PD+ + K +++++ W + + A + D +E+
Sbjct: 862 EQEKINSAPDFTQEDELRKQELISKAFTNWNKRDFMAFINACAKYGRDDMEN 913
Score = 38 (18.4 bits), Expect = 7.2e-71, Sum P(4) = 7.2e-71
Identities = 16/87 (18%), Positives = 40/87 (45%)
Query: 967 ENNLEIGSSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDAIMN--AHDEEKM 1024
+N E +S+ +D+I + +++T L + + + G+ + I N A++
Sbjct: 666 KNMFEKKASKVTVDADIDDILKKGEQKTQELNAKYQSLGLDDLQKFNGIENQSAYEWNGK 725
Query: 1025 RLEEQASQVAQRAAEALRQSRMLRSRD 1051
+++++ + E + SR R R+
Sbjct: 726 SFQKKSND---KVVEWINPSRRERRRE 749
>UNIPROTKB|I3LTT5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 EMBL:CU695129
Ensembl:ENSSSCT00000027860 Uniprot:I3LTT5
Length = 778
Score = 578 (208.5 bits), Expect = 7.6e-72, Sum P(3) = 7.6e-72
Identities = 141/393 (35%), Positives = 223/393 (56%)
Query: 529 NRVLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV 586
+ ++ E + +T+YE + + EK + W Y V+DE HRI+N +++S + ++ ++
Sbjct: 279 DEMMPGEWDVCVTSYEMV--IKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKST 336
Query: 587 HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAY 646
+R+++TG P+QN L ELW+L +F+ P F++ F +G
Sbjct: 337 NRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQ--------KLVE 388
Query: 647 RCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD 706
R VL+ P+LLRR+K DV LP K E ++ L++ QR Y L +++ +
Sbjct: 389 RLHAVLK----PFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMK-DIDVLNS 443
Query: 707 -GSRNSLYGIDVM---RKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVW 758
G + + ++++ RK CNHP L + + P Y E S KM V+ ++L
Sbjct: 444 AGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG--PPYTTDEHIVSNSGKMVVLDKLLAKL 501
Query: 759 KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYN--NSSDVFI 816
K+QG RVL+F+Q ++LDILE + + GYEY R+DG TP ++R I+ +N NSS FI
Sbjct: 502 KEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNVPNSSR-FI 560
Query: 817 FILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIE 876
F+L+T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQK+ V V+RLIT T+E
Sbjct: 561 FMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 620
Query: 877 EKVYHRQIYKHFLTNKILKNPQQRRFFKARNMK 909
E++ R K L + ++ QQ R ++ K
Sbjct: 621 ERIVERAEIKLRLDSIVI---QQGRLIDQQSNK 650
Score = 172 (65.6 bits), Expect = 7.6e-72, Sum P(3) = 7.6e-72
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL L+ GI+ DEMGLGKT+Q ++ LG L H+ N+ P +V+ P +
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 245
Query: 461 LLRQWKREAEKWYPSFHV 478
L W E ++W PS V
Sbjct: 246 TLHNWMNEFKRWVPSLRV 263
Score = 47 (21.6 bits), Expect = 1.3e-07, Sum P(3) = 1.3e-07
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QR ++ MKD+ LN G NI QL + N
Sbjct: 426 QREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCN 464
Score = 37 (18.1 bits), Expect = 7.6e-72, Sum P(3) = 7.6e-72
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 280 AAQARPSTKLLDPESLPKL 298
AA+A S K +DPE K+
Sbjct: 72 AAKASKSEKEMDPEYEEKM 90
Score = 37 (18.1 bits), Expect = 4.4e-56, Sum P(2) = 4.4e-56
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 492 KKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINR 530
K AK+S ++ + D +YE + + K+++ L+ +
Sbjct: 70 KLAAKASKSEKE----MDPEYEEKMKADRAKRFEFLLKQ 104
>UNIPROTKB|Q5T890 [details] [associations]
symbol:RAD26L "Putative DNA repair and recombination
protein RAD26-like" species:9606 "Homo sapiens" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005815
"microtubule organizing center" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
GO:GO:0005815 HSSP:Q97XQ5 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:CH471174 EMBL:AL161454
EMBL:BC035183 EMBL:BC140702 EMBL:AL389953 IPI:IPI00641648
IPI:IPI00873984 RefSeq:NP_001010895.1 UniGene:Hs.432364
UniGene:Hs.732570 ProteinModelPortal:Q5T890 SMR:Q5T890
IntAct:Q5T890 PhosphoSite:Q5T890 DMDM:74756405 PRIDE:Q5T890
DNASU:375748 Ensembl:ENST00000288985 Ensembl:ENST00000426805
Ensembl:ENST00000437817 GeneID:375748 KEGG:hsa:375748
UCSC:uc004avt.4 UCSC:uc010mrz.3 CTD:375748 HGNC:HGNC:26922
neXtProt:NX_Q5T890 PharmGKB:PA134961240 HOGENOM:HOG000074171
HOVERGEN:HBG108393 InParanoid:Q5T890 OMA:HGNRKDN OrthoDB:EOG41G33K
ChiTaRS:ERCC6L2 GenomeRNAi:375748 NextBio:100596
ArrayExpress:Q5T890 Bgee:Q5T890 CleanEx:HS_C9orf102
Genevestigator:Q5T890 Uniprot:Q5T890
Length = 712
Score = 413 (150.4 bits), Expect = 8.8e-72, Sum P(3) = 8.8e-72
Identities = 81/207 (39%), Positives = 135/207 (65%)
Query: 704 ILDGSRNSLYGIDVMRKICNH-----PDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVW 758
+L + S ++++IC+ PD +++ + +P+ S KMKV+ Q+L
Sbjct: 472 LLQAASTSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHC 531
Query: 759 KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFI 818
+ +VLLF+ + ++LD+L+ + +ASG +YRR+DG T ++R+ ++ E+N++ DV I +
Sbjct: 532 RKNRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNICL 591
Query: 819 LTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEK 878
++T GGLG N GAN V++FDP WNP+ D+QA +RA+RIGQ +DV V RLI+ GT+EE
Sbjct: 592 VSTMAGGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEI 651
Query: 879 VYHRQIYKHFLTNKILKNPQQRRFFKA 905
+Y RQIYK L ++ + +R+F+A
Sbjct: 652 MYLRQIYKQQLHCVVVGSENAKRYFEA 678
Score = 400 (145.9 bits), Expect = 8.8e-72, Sum P(3) = 8.8e-72
Identities = 110/325 (33%), Positives = 170/325 (52%)
Query: 385 FVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA- 443
F + G IP +I L DYQ+ G ++L+ + G I+GD+MGLGKT+QV+SFL A
Sbjct: 117 FKLSDNGDSIPYTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAV 176
Query: 444 LHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDND 503
LH + P LLR K+E P L +A+ + F S +
Sbjct: 177 LHKKGTREDIENNMPEFLLRSMKKE-----P------LSSTAKKM-FLIVAPLSVLYNWK 224
Query: 504 GEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVL 563
E + + N K +L+ RV + + + +TTYE LRL ++L +EW ++
Sbjct: 225 DELDTWGYFRVTVLHGNRKDNELI--RVKQRKCEIALTTYETLRLCLDELNSLEWSAVIV 282
Query: 564 DEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEA 623
DE HRI+NP A ++ V K L+ RI +TG +QN + ELW + D+ PG LG F+
Sbjct: 283 DEAHRIKNPKARVTEVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKK 342
Query: 624 EFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCS 683
+F+ P+ G A+ +++T + L + + LRR K + QLPKK + +++CS
Sbjct: 343 QFSDPVEHGQRHTATKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCS 402
Query: 684 LTEEQRAVYRAFLASSEVEQILDGS 708
LT+ Q+AVY+ L + +V IL S
Sbjct: 403 LTDFQKAVYQTVLETEDVTLILQSS 427
Score = 41 (19.5 bits), Expect = 8.8e-72, Sum P(3) = 8.8e-72
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 285 PSTKLLDPESLPKLDGPTRPFQRLKTPFRMPQSEES 320
P + D E L K P R F F++ + +S
Sbjct: 90 PRNLIFDDEDLEKPYFPNRKFPSSSVAFKLSDNGDS 125
>UNIPROTKB|J9P3F5 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 Gene3D:1.25.40.10
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:54821 GeneTree:ENSGT00590000083118 OMA:TKNGDLE
EMBL:AAEX03026496 RefSeq:XP_549075.2 Ensembl:ENSCAFT00000036577
GeneID:491955 KEGG:cfa:491955 Uniprot:J9P3F5
Length = 1268
Score = 398 (145.2 bits), Expect = 2.4e-71, Sum P(4) = 2.4e-71
Identities = 79/184 (42%), Positives = 124/184 (67%)
Query: 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDG-LTPVKQR 801
E S KM + ++L+ +D+GH+ L+F+Q++Q+L+I+E L ++ R+DG +T + +R
Sbjct: 481 EESGKMIFLIELLRRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKILRVDGTVTHLVER 540
Query: 802 MALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQK 861
I + + D +F+LTT+VGG+G LT A RV+IFDP WNP+TD QA +R +RIGQK
Sbjct: 541 EKRIHLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQK 600
Query: 862 QDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL---KNPQQRRFFKARNMKDLFTLNDDG 918
+++ VYRLIT GT+EEK+Y RQ++K L + KNP R+F + +++LFT+ D
Sbjct: 601 ENIVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNPF--RYFTKQELRELFTIEDFQ 658
Query: 919 NGGS 922
N +
Sbjct: 659 NSAT 662
Score = 225 (84.3 bits), Expect = 2.4e-71, Sum P(4) = 2.4e-71
Identities = 53/170 (31%), Positives = 90/170 (52%)
Query: 528 INRVLRSESGLLITTYEQLRLLGEKLLDVE-----WGYAVLDEGHRIRNPNAEISLVCKQ 582
+NR+ + +G++ITTY+ L ++L + W Y +LDE H+I+ + + ++ +
Sbjct: 210 LNRI-QQRNGVIITTYQMLINNWQQLSSLNGQEFVWDYVILDEAHKIKTSSTKSAICARA 268
Query: 583 LQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKL-GVLPVFEAEFAVPITVGGYANASPLQ 641
+ +RI++TG PIQN L ELWSLFDF G L G L F+ E+ PI +A+P +
Sbjct: 269 VPARNRILLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKIEYENPIMRAREKDATPGE 328
Query: 642 VSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAV 691
+ + + L +I + LRR K +V + E + F + A+
Sbjct: 329 KALGLKISENLMAIIKSHFLRRTKEEVQKK-SSTPEEIRFSEKNPDGDAI 377
Score = 198 (74.8 bits), Expect = 2.4e-71, Sum P(4) = 2.4e-71
Identities = 36/98 (36%), Positives = 60/98 (61%)
Query: 391 GLKIPESIFNNLFDYQKVGVQWLWELHCQ-RAGGIIGDEMGLGKTIQVLSFLGALHFSNM 449
GL + + N LF++QK GV +L+ L+ R GGI+ D+MGLGKT+Q+++FL + + +
Sbjct: 107 GLLLYRELHNQLFEHQKEGVAFLYSLYRDGRKGGILADDMGLGKTVQIIAFLSGMFDATL 166
Query: 450 YKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQD 487
+++ P L+ W +E KW P V+ H S++D
Sbjct: 167 VSHVLLIMPTNLISTWIKEFVKWTPGMRVKTFHGSSKD 204
Score = 96 (38.9 bits), Expect = 2.4e-71, Sum P(4) = 2.4e-71
Identities = 17/57 (29%), Positives = 36/57 (63%)
Query: 672 LPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLL 728
L +K + +++ L Q +YR F++ ++++L +R+ L + V++K+C+HP LL
Sbjct: 383 LSRKNDLIIWIRLRPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLL 439
>MGI|MGI:2654144 [details] [associations]
symbol:Ercc6l "excision repair cross-complementing rodent
repair deficiency complementation group 6 like" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IEA]
[GO:0000776 "kinetochore" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005694 "chromosome" evidence=IEA] [GO:0007049
"cell cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0051301 "cell division"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR011990 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50005
PROSITE:PS50293 PROSITE:PS51194 SMART:SM00490 MGI:MGI:2654144
GO:GO:0005524 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
Gene3D:1.25.40.10 GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000777
CTD:54821 GeneTree:ENSGT00590000083118 HOGENOM:HOG000074172
HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD EMBL:AY172688 EMBL:AK029015
EMBL:AK045113 EMBL:AK084617 EMBL:AK084618 EMBL:AL807784
EMBL:BC037660 IPI:IPI00221889 RefSeq:NP_666347.2 UniGene:Mm.31911
ProteinModelPortal:Q8BHK9 SMR:Q8BHK9 IntAct:Q8BHK9 STRING:Q8BHK9
PhosphoSite:Q8BHK9 PaxDb:Q8BHK9 PRIDE:Q8BHK9
Ensembl:ENSMUST00000056904 GeneID:236930 KEGG:mmu:236930
UCSC:uc009tyk.2 InParanoid:Q8BHK9 NextBio:383173 Bgee:Q8BHK9
Genevestigator:Q8BHK9 Uniprot:Q8BHK9
Length = 1240
Score = 385 (140.6 bits), Expect = 6.8e-71, Sum P(4) = 6.8e-71
Identities = 79/185 (42%), Positives = 123/185 (66%)
Query: 736 IPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDG- 794
+PD + S KM + +L+ +D+GH+ L+F+Q+ ++L+I+E L ++ R+DG
Sbjct: 453 LPDKTLIQESGKMIFLMSLLERLQDEGHQTLVFSQSIKILNIIERLLKNKHFKTLRIDGT 512
Query: 795 LTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARER 854
+T + +R I + + + +F+LTT+VGG+G LT A RV+IFDP WNP+TD QA +R
Sbjct: 513 VTHLWEREKRIQLFQQNKEYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDR 572
Query: 855 AWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL---KNPQQRRFFKARNMKDL 911
+RIGQK++V VYRLIT GT+EEK+Y RQ++K L + KNP R+F + +K+L
Sbjct: 573 VYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPF--RYFTKQELKEL 630
Query: 912 FTLND 916
FT+ D
Sbjct: 631 FTVGD 635
Score = 235 (87.8 bits), Expect = 6.8e-71, Sum P(4) = 6.8e-71
Identities = 48/146 (32%), Positives = 83/146 (56%)
Query: 532 LRSESGLLITTYEQLRLLGEKLLDVE-----WGYAVLDEGHRIRNPNAEISLVCKQLQTV 586
++ +G++ITTY+ L ++L W Y +LDE H+I++ + + ++ + +
Sbjct: 192 IQQRNGVVITTYQMLLNNWQQLASFNGQAFVWDYVILDEAHKIKSASTKSAVCARAIPAS 251
Query: 587 HRIIMTGAPIQNKLSELWSLFDFVFPGKL-GVLPVFEAEFAVPITVGGYANASPLQVSTA 645
+R+++TG P+QN L ELWSLFDF G L G L F+ E+ PI +A+P + +
Sbjct: 252 NRLLLTGTPVQNNLQELWSLFDFACQGSLLGTLKTFKMEYEHPIIRAREKDATPGEKALG 311
Query: 646 YRCAVVLRDLIMPYLLRRMKADVNAQ 671
+ + L ++I PY LRR K +V +
Sbjct: 312 LKISENLMEIIKPYFLRRTKEEVQTK 337
Score = 191 (72.3 bits), Expect = 6.8e-71, Sum P(4) = 6.8e-71
Identities = 33/97 (34%), Positives = 59/97 (60%)
Query: 391 GLKIPESIFNNLFDYQKVGVQWLWELHCQ-RAGGIIGDEMGLGKTIQVLSFLGALHFSNM 449
GL + ++ LF++QK G+ +L+ L+ R GGI+ D+MGLGKT+Q+++FL + +++
Sbjct: 86 GLLLYRELYEKLFEHQKEGIAFLYSLYKDGRKGGILADDMGLGKTVQIIAFLSGMFDASL 145
Query: 450 YKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQ 486
+++ P L+ W E KW P V+ H S++
Sbjct: 146 VNHVLLIMPTNLINTWVNEFAKWTPGMRVKTFHGSSK 182
Score = 102 (41.0 bits), Expect = 6.8e-71, Sum P(4) = 6.8e-71
Identities = 19/69 (27%), Positives = 43/69 (62%)
Query: 672 LPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLERE 731
L +K + +++ L Q +YR F++ ++++L +R+ L + V++K+C+HP LL
Sbjct: 362 LARKNDLIVWIRLLPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLKKLCDHPRLLSA- 420
Query: 732 QSCQIPDYG 740
++C++ + G
Sbjct: 421 RACRLLNLG 429
>UNIPROTKB|F1NYG8 [details] [associations]
symbol:F1NYG8 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00590000083118 EMBL:AADN02067869 EMBL:AADN02067866
EMBL:AADN02067867 EMBL:AADN02067868 IPI:IPI00682975
Ensembl:ENSGALT00000020603 OMA:PEINICL Uniprot:F1NYG8
Length = 879
Score = 411 (149.7 bits), Expect = 2.7e-70, Sum P(4) = 2.7e-70
Identities = 112/339 (33%), Positives = 180/339 (53%)
Query: 385 FVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA- 443
F + G IP +I L YQ+ G Q+L+ + + G I+GD+MGLGKT+QV+SFL A
Sbjct: 17 FKLSDNGDFIPYTINRYLRGYQREGAQFLYWHYANKRGCILGDDMGLGKTVQVISFLAAV 76
Query: 444 LHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDND 503
LH + P L R K+E+ K P L + + + K + D
Sbjct: 77 LHKKGTREDIENNMPEFLQRTMKKES-KCNPK--KTFLIVAPLSVLYNWK----DELDTW 129
Query: 504 GEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVL 563
G ++ ++ + K+ DL NR+ + + + +TTYE LRL ++L ++ W ++
Sbjct: 130 GY------FKVSVLHGSKKEGDL--NRIKQGKCEVALTTYETLRLYLDELNNIGWSAVIV 181
Query: 564 DEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEA 623
DE HRI+NP ++I+ K L+ RI +TG +QN ++ELW + D+ PG LG F+
Sbjct: 182 DEVHRIKNPKSQITQTMKSLKCNVRIGLTGTILQNNMNELWCVMDWAVPGLLGSRVHFKK 241
Query: 624 EFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCS 683
+F+ P+ G A+ +++T + V L + + LRR K ++ QLPKK + +++CS
Sbjct: 242 KFSDPLERGQRHTATKRELATGRKAMVKLARKMSSWFLRRTKVLISDQLPKKEDRMVYCS 301
Query: 684 LTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKIC 722
LTE Q+AVYRA L + +V +L +RK C
Sbjct: 302 LTEFQKAVYRAVLKTEDVSLVLRAREPCSCNSGRIRKNC 340
Score = 395 (144.1 bits), Expect = 2.7e-70, Sum P(4) = 2.7e-70
Identities = 75/189 (39%), Positives = 126/189 (66%)
Query: 718 MRKICNH-----PDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQ 772
++++CN PD ++ + +P+ S KM+V+ Q+L ++ +VLLF+ +
Sbjct: 385 IKRVCNEVFSSFPDFMQLSKDAAFETISDPKYSGKMRVLQQLLNHFRKNKDKVLLFSFST 444
Query: 773 QMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTG 832
++LD+LE + IASG ++RR+DG T + R+ ++ E+N ++ I +++T GGLG N G
Sbjct: 445 KLLDVLEQYCIASGLDFRRLDGSTKSEDRIRIVREFNRVPEINICLVSTMAGGLGLNFVG 504
Query: 833 ANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNK 892
AN VI+FDP WNP+ D+QA +RA+RIGQ +DV V+RLI+ GT+EE +Y RQ+YK L
Sbjct: 505 ANVVILFDPTWNPANDLQAIDRAYRIGQCKDVKVFRLISLGTVEEMMYLRQVYKQLLAY- 563
Query: 893 ILKNPQQRR 901
I++ ++++
Sbjct: 564 IIQGQKKKK 572
Score = 50 (22.7 bits), Expect = 2.7e-70, Sum P(4) = 2.7e-70
Identities = 21/80 (26%), Positives = 38/80 (47%)
Query: 1006 IHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTA 1065
+ +AM+ A N + + + RL+E S + + E R+ ++ ++V TW +
Sbjct: 577 LSTAMSGRAGRNWYVDVRTRLQEFGSCLTKEILE--REGQV--EAGVMTVTTWLKEEPPQ 632
Query: 1066 GAPSSVRKKFGSTVGSQLIK 1085
G+ +VR G G LIK
Sbjct: 633 GSSENVRHLCGKIFG-YLIK 651
Score = 37 (18.1 bits), Expect = 2.7e-70, Sum P(4) = 2.7e-70
Identities = 5/19 (26%), Positives = 13/19 (68%)
Query: 715 IDVMRKICNHPDLLEREQS 733
+ +++K+ NH LL+ + +
Sbjct: 359 LTILQKVANHVALLQTDNT 377
>ZFIN|ZDB-GENE-110411-274 [details] [associations]
symbol:si:ch211-248d20.2 "si:ch211-248d20.2"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-110411-274
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00590000083118
EMBL:CR376747 IPI:IPI00994578 RefSeq:XP_689596.5 UniGene:Dr.83737
Ensembl:ENSDART00000122774 Ensembl:ENSDART00000125173 GeneID:553504
KEGG:dre:553504 NextBio:20880249 Uniprot:F1QJP0
Length = 1269
Score = 417 (151.9 bits), Expect = 3.7e-70, Sum P(6) = 3.7e-70
Identities = 83/189 (43%), Positives = 125/189 (66%)
Query: 717 VMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLD 776
V RK PD ER + +P S KMKV+ ++L + + +VLLF+ + ++LD
Sbjct: 416 VFRKF---PDFTERCKQAAFEAMSDPMYSGKMKVMQKLLNHFIAKKDKVLLFSLSTKLLD 472
Query: 777 ILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRV 836
+LES+ +A G EY R+DG T K R+ ++ E+N+S DV + +++T GGLG N GAN V
Sbjct: 473 VLESYCMAEGLEYHRLDGNTKSKDRVKIVKEFNSSRDVNLCLVSTLAGGLGLNFIGANVV 532
Query: 837 IIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKN 896
++FDP WNP+ D+QA +R +RIGQ +DVTV+RLI+ GT+EE +Y RQ+YK L + ++
Sbjct: 533 VLFDPTWNPANDLQAIDRVYRIGQCRDVTVFRLISLGTVEEIIYLRQVYKQQLQSSVIGQ 592
Query: 897 PQQRRFFKA 905
RR+F+A
Sbjct: 593 ENARRYFEA 601
Score = 296 (109.3 bits), Expect = 3.7e-70, Sum P(6) = 3.7e-70
Identities = 64/179 (35%), Positives = 100/179 (55%)
Query: 530 RVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRI 589
RV R + +TTYE LRL ++ + W ++DE H+I+N ++I+ KQ++ RI
Sbjct: 171 RVQRGRCEIALTTYETLRLCLDQFNSINWAAVIVDEAHKIKNHKSKITQAVKQMRCKVRI 230
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
+TG +QN L ELW + ++ P LG L F+ F+ PI G + ++ +
Sbjct: 231 GLTGTILQNNLEELWCVMNWAVPRCLGSLGAFKNRFSDPIEKGQKHTVTKRALAEGRKAV 290
Query: 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGS 708
L + + LRR K+ ++ QLPKK + V++CSLT+ QR VYRA L S +V +L S
Sbjct: 291 QELAKKLSRWFLRRTKSLISDQLPKKDDRVVYCSLTDFQRTVYRAVLDSDDVTLMLQSS 349
Score = 133 (51.9 bits), Expect = 3.7e-70, Sum P(6) = 3.7e-70
Identities = 24/60 (40%), Positives = 42/60 (70%)
Query: 385 FVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL 444
F+ +K+P +I L DYQ+ G++++++ + + G I+GD+MGLGKT+QV+ FL A+
Sbjct: 43 FLLAGSDVKVPYTINRYLRDYQREGIKFIYQNYAKSRGCILGDDMGLGKTVQVIGFLAAV 102
Score = 62 (26.9 bits), Expect = 3.7e-70, Sum P(6) = 3.7e-70
Identities = 12/37 (32%), Positives = 21/37 (56%)
Query: 451 KPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQD 487
K ++V P+++L WK E + W F V ++H +D
Sbjct: 131 KVFVIVAPLSVLYNWKDELDTW-GHFRVVVVHGVRKD 166
Score = 46 (21.3 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 458 PVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTD 501
P++ R K +++ +P+ VE+ A+D K+ K+S+T+
Sbjct: 1047 PLSAARH-KPTSKRAHPNSSVEVPTPEAEDRRKTSKKKKTSETE 1089
Score = 45 (20.9 bits), Expect = 3.7e-70, Sum P(6) = 3.7e-70
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 1021 EEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTWTG 1060
++K E +AS++ + L +++M +S DIS + +G
Sbjct: 1081 KKKKTSETEASKIDLHCSTDLTKTKMKKSSTDISPSSSSG 1120
Score = 43 (20.2 bits), Expect = 5.9e-70, Sum P(6) = 5.9e-70
Identities = 13/44 (29%), Positives = 20/44 (45%)
Query: 1103 AGASAGKVLSSSELLARIRGNQENAVGAGLERQFEVASSSANVA 1146
AG SAG + +E+L G+++ +R E S VA
Sbjct: 670 AGGSAGVCIKPAEVLDFSSGSEDEDPCCSKQRPSETHSGEQMVA 713
Score = 43 (20.2 bits), Expect = 5.9e-70, Sum P(6) = 5.9e-70
Identities = 19/83 (22%), Positives = 34/83 (40%)
Query: 1048 RSRDDISVPTWTGKSGTAGAPSSVRKKFGSTVGSQLIKPLEGSSSNKTGEFNSFGAGASA 1107
RS D+I +W+ G A V++K + Q + +S K G+ G +
Sbjct: 811 RSEDEIEHFSWSDDEGFLKAVRCVKEK--ESDHRQSSRRENTTSGFKKGQSRDEGYTGTL 868
Query: 1108 GKVLSSSELLARIRGNQENAVGA 1130
+L + + NQ+ VG+
Sbjct: 869 DSLLGGLQQVGYTHSNQK-VVGS 890
Score = 38 (18.4 bits), Expect = 3.7e-70, Sum P(6) = 3.7e-70
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 717 VMRKICNHPDLLE 729
++RK+ NH LL+
Sbjct: 384 ILRKVANHVALLQ 396
>GENEDB_PFALCIPARUM|PF11_0053 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:5833
"Plasmodium falciparum" [GO:0006338 "chromatin remodeling"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008026 "ATP-dependent helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 616 (221.9 bits), Expect = 5.6e-70, Sum P(2) = 5.6e-70
Identities = 146/423 (34%), Positives = 241/423 (56%)
Query: 528 INR-VLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV 586
+NR +L S+ +L+TTYE + L D++W + V+DE HRI+N + +S + L++
Sbjct: 412 LNRNLLHSDFDVLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSE 471
Query: 587 HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAY 646
+R+++TG P+ N L ELWSL +F+ P F+ F N S + +
Sbjct: 472 NRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLF----------NISKISTNDNK 521
Query: 647 RCAVV--LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASS-EVEQ 703
+ ++ L ++ P++LRR+K +V LP K E +F +++ Q+ +Y L+ + +V
Sbjct: 522 QSEIITQLHTILKPFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILSKNIDVLN 581
Query: 704 ILDGSRNSLYGIDV-MRKICNHPDLLEREQSCQIPDY--GNP--ERSEKMKVVAQVLKVW 758
+ GS+N + I + +RK CNHP L + + P Y GN E S KM ++ ++L
Sbjct: 582 AMTGSKNQMLNILMQLRKCCNHPYLFD---GIEEPPYIEGNHLIETSGKMSLLDKLLPRL 638
Query: 759 KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIF 817
K + RVLLF+Q ++LDI++ + Y Y R+DG TP +R I+++N +S FIF
Sbjct: 639 KKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVRINQFNEPNSKYFIF 698
Query: 818 ILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEE 877
+L+T+ GG+G NLT A+ VI+FD D+NP D+QA +RA RIGQK+ V VYR +T+ ++EE
Sbjct: 699 LLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVEE 758
Query: 878 KVYHRQIYKHFLTNKIL-KNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDV 936
K+ R K L + I+ K K N ++L + + G +T +I S ED+
Sbjct: 759 KIVERAAKKLKLDSLIIQKGKLNLNSAKENNKQELHDILNFGAPEVYKTQDISSISDEDI 818
Query: 937 NVV 939
+++
Sbjct: 819 DII 821
Score = 182 (69.1 bits), Expect = 5.6e-70, Sum P(2) = 5.6e-70
Identities = 36/82 (43%), Positives = 52/82 (63%)
Query: 392 LKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS-NMY 450
LK P +I + YQ G+ WL++L+ + GI+ DEMGLGKT+Q +S L L F+ N+
Sbjct: 312 LKQPMNINGTMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISLLCYLRFNKNIK 371
Query: 451 KPSIVVCPVTLLRQWKREAEKW 472
K SI++CP + L W E +KW
Sbjct: 372 KKSIIICPRSTLDNWYEEIKKW 393
Score = 45 (20.9 bits), Expect = 1.5e-55, Sum P(2) = 1.5e-55
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 483 DSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
D + ++ ++K + + T ND +H+ D + N
Sbjct: 162 DDSMEMNDKEKGSTNMSTINDNNNNHNDDSNNHNDDSN 199
Score = 41 (19.5 bits), Expect = 3.9e-55, Sum P(2) = 3.9e-55
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHD-SDYEGNLSSRN 520
E+ +D+ ++ FR K+ S + ++ +GS + S N ++ N
Sbjct: 146 EISYDNNEEDEFRNKKDDSMEMNDKEKGSTNMSTINDNNNNHN 188
Score = 40 (19.1 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 23/112 (20%), Positives = 46/112 (41%)
Query: 803 ALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQ 862
+L DE+ ++ + + + T + +N R D+N T +
Sbjct: 1035 SLFDEHKDTKEEELLKMGTH-SDVNSNDKDYKRSSFMSTDYNMKTTYLNNINSNNNNNNN 1093
Query: 863 DVTVYRLITRGTIEEKVYHRQ-IYKHFLTNKILKNPQQRRFFKARNMKDLFT 913
++ + TI+++ Y ++ I F + K L Q FK RN+K+ +T
Sbjct: 1094 NINDNVGTSINTIDDQQYFKKKILSLFESGKKL----QMIKFKDRNIKNCYT 1141
Score = 37 (18.1 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 894 LKN--PQQRRFFKARNMKDLFTLNDDGNGGSTETSN 927
+KN Q F K +N + ND N ST N
Sbjct: 1136 IKNCYTQVANFIK-KNFPEKINNNDTNNNKSTTLKN 1170
>UNIPROTKB|Q8IIW0 [details] [associations]
symbol:PF11_0053 "PfSNF2L" species:36329 "Plasmodium
falciparum 3D7" [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0008026
EMBL:AE014186 GO:GO:0008094 KO:K01509 RefSeq:XP_001347729.1
ProteinModelPortal:Q8IIW0 IntAct:Q8IIW0 MINT:MINT-1585538
EnsemblProtists:PF11_0053:mRNA GeneID:810605 KEGG:pfa:PF11_0053
EuPathDB:PlasmoDB:PF3D7_1104200 HOGENOM:HOG000282197
ProtClustDB:CLSZ2444952 Uniprot:Q8IIW0
Length = 1426
Score = 616 (221.9 bits), Expect = 5.6e-70, Sum P(2) = 5.6e-70
Identities = 146/423 (34%), Positives = 241/423 (56%)
Query: 528 INR-VLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV 586
+NR +L S+ +L+TTYE + L D++W + V+DE HRI+N + +S + L++
Sbjct: 412 LNRNLLHSDFDVLLTTYEIVIKDKSALYDIDWFFLVIDEAHRIKNEKSVLSSSVRFLRSE 471
Query: 587 HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAY 646
+R+++TG P+ N L ELWSL +F+ P F+ F N S + +
Sbjct: 472 NRLLITGTPLHNNLKELWSLLNFLMPKIFDNSEEFDNLF----------NISKISTNDNK 521
Query: 647 RCAVV--LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASS-EVEQ 703
+ ++ L ++ P++LRR+K +V LP K E +F +++ Q+ +Y L+ + +V
Sbjct: 522 QSEIITQLHTILKPFMLRRLKVEVEQSLPPKREIYIFVGMSKLQKKLYSDILSKNIDVLN 581
Query: 704 ILDGSRNSLYGIDV-MRKICNHPDLLEREQSCQIPDY--GNP--ERSEKMKVVAQVLKVW 758
+ GS+N + I + +RK CNHP L + + P Y GN E S KM ++ ++L
Sbjct: 582 AMTGSKNQMLNILMQLRKCCNHPYLFD---GIEEPPYIEGNHLIETSGKMSLLDKLLPRL 638
Query: 759 KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIF 817
K + RVLLF+Q ++LDI++ + Y Y R+DG TP +R I+++N +S FIF
Sbjct: 639 KKENSRVLLFSQMTRLLDIIDDYCRWKNYPYLRIDGSTPGDERQVRINQFNEPNSKYFIF 698
Query: 818 ILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEE 877
+L+T+ GG+G NLT A+ VI+FD D+NP D+QA +RA RIGQK+ V VYR +T+ ++EE
Sbjct: 699 LLSTRAGGIGINLTTADIVILFDSDYNPQMDIQAMDRAHRIGQKKRVIVYRFVTQNSVEE 758
Query: 878 KVYHRQIYKHFLTNKIL-KNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDV 936
K+ R K L + I+ K K N ++L + + G +T +I S ED+
Sbjct: 759 KIVERAAKKLKLDSLIIQKGKLNLNSAKENNKQELHDILNFGAPEVYKTQDISSISDEDI 818
Query: 937 NVV 939
+++
Sbjct: 819 DII 821
Score = 182 (69.1 bits), Expect = 5.6e-70, Sum P(2) = 5.6e-70
Identities = 36/82 (43%), Positives = 52/82 (63%)
Query: 392 LKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS-NMY 450
LK P +I + YQ G+ WL++L+ + GI+ DEMGLGKT+Q +S L L F+ N+
Sbjct: 312 LKQPMNINGTMKPYQLEGLNWLYQLYRFKINGILADEMGLGKTLQTISLLCYLRFNKNIK 371
Query: 451 KPSIVVCPVTLLRQWKREAEKW 472
K SI++CP + L W E +KW
Sbjct: 372 KKSIIICPRSTLDNWYEEIKKW 393
Score = 45 (20.9 bits), Expect = 1.5e-55, Sum P(2) = 1.5e-55
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 483 DSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
D + ++ ++K + + T ND +H+ D + N
Sbjct: 162 DDSMEMNDKEKGSTNMSTINDNNNNHNDDSNNHNDDSN 199
Score = 41 (19.5 bits), Expect = 3.9e-55, Sum P(2) = 3.9e-55
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHD-SDYEGNLSSRN 520
E+ +D+ ++ FR K+ S + ++ +GS + S N ++ N
Sbjct: 146 EISYDNNEEDEFRNKKDDSMEMNDKEKGSTNMSTINDNNNNHN 188
Score = 40 (19.1 bits), Expect = 3.8e-08, Sum P(2) = 3.8e-08
Identities = 23/112 (20%), Positives = 46/112 (41%)
Query: 803 ALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQ 862
+L DE+ ++ + + + T + +N R D+N T +
Sbjct: 1035 SLFDEHKDTKEEELLKMGTH-SDVNSNDKDYKRSSFMSTDYNMKTTYLNNINSNNNNNNN 1093
Query: 863 DVTVYRLITRGTIEEKVYHRQ-IYKHFLTNKILKNPQQRRFFKARNMKDLFT 913
++ + TI+++ Y ++ I F + K L Q FK RN+K+ +T
Sbjct: 1094 NINDNVGTSINTIDDQQYFKKKILSLFESGKKL----QMIKFKDRNIKNCYT 1141
Score = 37 (18.1 bits), Expect = 7.8e-08, Sum P(2) = 7.8e-08
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 894 LKN--PQQRRFFKARNMKDLFTLNDDGNGGSTETSN 927
+KN Q F K +N + ND N ST N
Sbjct: 1136 IKNCYTQVANFIK-KNFPEKINNNDTNNNKSTTLKN 1170
>TAIR|locus:2087780 [details] [associations]
symbol:PIE1 "PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0009910 "negative regulation of flower development"
evidence=IGI] [GO:0016514 "SWI/SNF complex" evidence=ISS]
[GO:0048441 "petal development" evidence=IGI] [GO:0048451 "petal
formation" evidence=IGI;RCA] [GO:0005618 "cell wall" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IGI;RCA] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0003002 "regionalization" evidence=RCA]
[GO:0006338 "chromatin remodeling" evidence=RCA] [GO:0007155 "cell
adhesion" evidence=RCA] [GO:0009793 "embryo development ending in
seed dormancy" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0010090 "trichome morphogenesis"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005618
GO:GO:0046686 EMBL:CP002686 GO:GO:0003677 GO:GO:0042742
GO:GO:0003682 Gene3D:1.10.10.60 GO:GO:0016514 GO:GO:0004386
GO:GO:0009910 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 KO:K11320 GO:GO:0048451
EMBL:AY279398 IPI:IPI00545059 RefSeq:NP_187887.3 UniGene:At.39549
SMR:Q7X9V2 IntAct:Q7X9V2 STRING:Q7X9V2 EnsemblPlants:AT3G12810.1
GeneID:820463 KEGG:ath:AT3G12810 TAIR:At3g12810 InParanoid:Q7X9V2
OMA:CCHPPPS ProtClustDB:CLSN2680833 Genevestigator:Q7X9V2
Uniprot:Q7X9V2
Length = 2055
Score = 382 (139.5 bits), Expect = 4.6e-69, Sum P(4) = 4.6e-69
Identities = 72/168 (42%), Positives = 111/168 (66%)
Query: 747 KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALID 806
K++ +A +L+ K GHR L+F Q +MLD+LE+F+ GY Y R+DG TP ++R L+
Sbjct: 1076 KLQELAMLLRKLKFGGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQ 1135
Query: 807 EYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866
+N + +F+FIL+T+ GG+G NL GA+ VI +D DWNP+ D QA++R RIGQ ++V +
Sbjct: 1136 RFNTNPKIFLFILSTRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHI 1195
Query: 867 YRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQR-RFFKARNMKDLFT 913
YRLI+ TIEE + + K L N +++N + FFK + +LF+
Sbjct: 1196 YRLISESTIEENILKKANQKRVLDNLVIQNGEYNTEFFKKLDPMELFS 1243
Score = 309 (113.8 bits), Expect = 4.6e-69, Sum P(4) = 4.6e-69
Identities = 76/193 (39%), Positives = 104/193 (53%)
Query: 540 ITTYEQLRLLGEKLLD-VEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQN 598
ITTY +L + K+ +W Y +LDE H I+N ++ + RI++TG P+QN
Sbjct: 640 ITTY-RLVIQDSKMFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQN 698
Query: 599 KLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMP 658
L ELWSL F+ P F+ F PI G + R VLR P
Sbjct: 699 DLMELWSLMHFLMPHVFQSHQEFKDWFCNPIA-GMVEGQEKINKEVIDRLHNVLR----P 753
Query: 659 YLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL-DGSRNSLYGIDV 717
+LLRR+K DV QLP K EHV+FC L++ QR +Y F+AS+E + L GS + I +
Sbjct: 754 FLLRRLKRDVEKQLPSKHEHVIFCRLSKRQRNLYEDFIASTETQATLTSGSFFGMISIIM 813
Query: 718 -MRKICNHPDLLE 729
+RK+CNHPDL E
Sbjct: 814 QLRKVCNHPDLFE 826
Score = 171 (65.3 bits), Expect = 4.6e-69, Sum P(4) = 4.6e-69
Identities = 32/102 (31%), Positives = 61/102 (59%)
Query: 393 KIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN-MYK 451
K+P + ++L +YQ +G+ WL ++ ++ GI+ DEMGLGKTI ++ L L ++
Sbjct: 527 KLPFLLKHSLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIMTIALLAHLACDKGIWG 586
Query: 452 PSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKK 493
P ++V P +++ W+ E KW P+F + SA++ +++
Sbjct: 587 PHLIVVPTSVMLNWETEFLKWCPAFKILTYFGSAKERKLKRQ 628
Score = 48 (22.0 bits), Expect = 2.8e-29, Sum P(3) = 2.8e-29
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 461 LLRQWKREAEKWYPSFHVELL 481
LLR+ KR+ EK PS H ++
Sbjct: 755 LLRRLKRDVEKQLPSKHEHVI 775
Score = 46 (21.3 bits), Expect = 4.6e-69, Sum P(4) = 4.6e-69
Identities = 25/104 (24%), Positives = 44/104 (42%)
Query: 94 EDNDIDDGDSTEQDG---REDEKSAVQASPNDM--TLQHALTADRLKSLKK-TKAQLVKE 147
ED D+ D TE D EDEK + + LQ+ + + L++ T ++ +E
Sbjct: 211 EDYDLKSEDETEDDEDTIEEDEKHFTKRERQEELEALQNEVDLPVEELLRRYTSGRVSRE 270
Query: 148 LSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRS 191
S K + + VK+E++ S Q G+D++
Sbjct: 271 TSPV-KDENEDNLTSVSRVTSPVKDENQDNLASV-GQDHGEDKN 312
Score = 39 (18.8 bits), Expect = 3.9e-06, Sum P(3) = 3.9e-06
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 1204 FKNLLKEIATLQKDPSGSRWVLKLNF 1229
+K L+ + A L K+ RW LNF
Sbjct: 658 WKYLILDEAHLIKNWKSQRWQTLLNF 683
Score = 37 (18.1 bits), Expect = 4.0e-68, Sum P(4) = 4.0e-68
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 179 KSKEAQKPGKDRSKQQKTV 197
KS +++ + R+K+QKT+
Sbjct: 17 KSGKSKPDNESRAKRQKTL 35
Score = 37 (18.1 bits), Expect = 5.9e-33, Sum P(4) = 5.9e-33
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 1023 KMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTW 1058
K R Q + + + +A+ + R+ S+D + W
Sbjct: 911 KNRKNLQGTNIFEEIRKAVFEERIQESKDRAAAIAW 946
>UNIPROTKB|B5MDQ0 [details] [associations]
symbol:ERCC6L "FLJ20105 protein, isoform CRA_a"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AL135749 EMBL:CH471213
HOGENOM:HOG000074172 HOVERGEN:HBG107854 OrthoDB:EOG4FR0RD
UniGene:Hs.47558 HGNC:HGNC:20794 IPI:IPI00873388 SMR:B5MDQ0
IntAct:B5MDQ0 STRING:B5MDQ0 Ensembl:ENST00000373657 Uniprot:B5MDQ0
Length = 1127
Score = 403 (146.9 bits), Expect = 1.1e-67, Sum P(4) = 1.1e-67
Identities = 82/186 (44%), Positives = 125/186 (67%)
Query: 735 QIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDG 794
Q+ D E S KM + +LK +D+GH+ L+F+Q++Q+L+I+E L ++ R+DG
Sbjct: 326 QVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDG 385
Query: 795 -LTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARE 853
+T + +R I+ + + D +F+LTT+VGG+G LT A RV+IFDP WNP+TD QA +
Sbjct: 386 TVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVD 445
Query: 854 RAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL---KNPQQRRFFKARNMKD 910
R +RIGQK++V VYRLIT GT+EEK+Y RQ++K L + KNP R+F + +++
Sbjct: 446 RVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNPF--RYFSKQELRE 503
Query: 911 LFTLND 916
LFT+ D
Sbjct: 504 LFTIED 509
Score = 252 (93.8 bits), Expect = 1.1e-67, Sum P(4) = 1.1e-67
Identities = 54/156 (34%), Positives = 88/156 (56%)
Query: 528 INRVLRSESGLLITTYEQL-----RLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQ 582
+NR+ + +G++ITTY+ L +L + + W Y +LDE H+I+ + + ++ +
Sbjct: 65 LNRI-QQRNGVIITTYQMLINNWQQLSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARA 123
Query: 583 LQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKL-GVLPVFEAEFAVPITVGGYANASPLQ 641
+ +R+++TG PIQN L ELWSLFDF G L G L F+ E+ PIT +A+P +
Sbjct: 124 IPASNRLLLTGTPIQNNLQELWSLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGE 183
Query: 642 VSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTE 677
+ ++ + L +I PY LRR K DV + E
Sbjct: 184 KALGFKISENLMAIIKPYFLRRTKEDVQKKKSSNPE 219
Score = 119 (46.9 bits), Expect = 1.1e-67, Sum P(4) = 1.1e-67
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 429 MGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQD 487
MGLGKT+Q+++FL + +++ +++ P L+ W +E KW P V+ H ++D
Sbjct: 1 MGLGKTVQIIAFLSGMFDASLVNHVLLIMPTNLINTWVKEFIKWTPGMRVKTFHGPSKD 59
Score = 104 (41.7 bits), Expect = 1.1e-67, Sum P(4) = 1.1e-67
Identities = 22/79 (27%), Positives = 44/79 (55%)
Query: 661 LRRMKADVNA--QLP---KKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGI 715
L DV+A ++P +K + +++ L Q +YR F++ ++++L +R+ L +
Sbjct: 222 LNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLDHIKELLMETRSPLAEL 281
Query: 716 DVMRKICNHPDLLEREQSC 734
V++K+C+HP LL C
Sbjct: 282 GVLKKLCDHPRLLSARACC 300
Score = 54 (24.1 bits), Expect = 1.4e-33, Sum P(2) = 1.4e-33
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 64 EKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKS 114
++L + R+ E+G + DH R +S + ++ G + QDG E E S
Sbjct: 268 KELLMETRSPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGNEGEDS 318
>DICTYBASE|DDB_G0292948 [details] [associations]
symbol:isw "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0016587 "Isw1
complex" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0292948 GO:GO:0005524
GenomeReviews:CM000155_GR GO:GO:0003677 EMBL:AAFI02000197
GO:GO:0016887 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016587 KO:K11654 SUPFAM:SSF101224
RefSeq:XP_629432.1 ProteinModelPortal:Q54CI4 STRING:Q54CI4
PRIDE:Q54CI4 EnsemblProtists:DDB0231763 GeneID:8628951
KEGG:ddi:DDB_G0292948 InParanoid:Q54CI4 OMA:IREANAF
ProtClustDB:CLSZ2728711 Uniprot:Q54CI4
Length = 1221
Score = 582 (209.9 bits), Expect = 3.1e-67, Sum P(5) = 3.1e-67
Identities = 144/394 (36%), Positives = 219/394 (55%)
Query: 525 DLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQ 584
D+ N+++ + + ITTYE W Y ++DE HRI+N N+ +S +
Sbjct: 365 DIKKNQLIFKKFDVCITTYEVAIREKSTFKKFSWRYIIIDEAHRIKNENSVLSKGVRMFN 424
Query: 585 TVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVST 644
+ R+++TG P+QN L ELWSL +F+ P F+ F + AN + Q
Sbjct: 425 SQFRLLITGTPLQNNLHELWSLLNFLLPDVFSSSDDFDKWFDL-------ANNTENQQEV 477
Query: 645 AYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQI 704
+ VLR P+LLRR+K +V LP K E LF L+ Q+ Y+ L S +++ +
Sbjct: 478 IDKLHKVLR----PFLLRRIKTEVEKSLPPKKEIKLFVGLSTMQKEWYKRLL-SKDLDAV 532
Query: 705 LDGSRNS-----LYGIDV-MRKICNHPDLLE-REQSCQIPDYGNPERSEKMKVVAQVLKV 757
+ G++ + L I + +RK CNHP L + E+ + S KM ++ ++LK
Sbjct: 533 VVGAKGNTGRVRLLNICMQLRKACNHPYLFDGAEEEPYTTGEHLIDNSGKMALLDKLLKK 592
Query: 758 WKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFI 816
K++G RVL+F+Q +MLDILE +++ GY+Y R+DG T R I+ YN SD+F
Sbjct: 593 LKERGSRVLIFSQMSRMLDILEDYMLYRGYKYARIDGSTESIVRENSIENYNKPGSDLFA 652
Query: 817 FILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIE 876
F+LTT+ GGLG L A+ VI+FD DWNP D+QA++RA RIGQ + VTVYR +T ++E
Sbjct: 653 FLLTTRAGGLGITLNTADIVILFDSDWNPQMDLQAQDRAHRIGQTKPVTVYRFVTENSME 712
Query: 877 EKVYHRQIYKHFLTNKILKNPQQRRFFKA-RNMK 909
EK+ + K L ++ QQ R +A +N K
Sbjct: 713 EKMVEKAEMKLQLDALVI---QQGRLVEANKNAK 743
Score = 170 (64.9 bits), Expect = 3.1e-67, Sum P(5) = 3.1e-67
Identities = 32/85 (37%), Positives = 49/85 (57%)
Query: 404 DYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVTLL 462
DYQ G+ WL +L+ + GI+ DEMGLGKT+Q +S LG L + + P +++ P + L
Sbjct: 278 DYQVYGLNWLIQLYERGINGILADEMGLGKTLQTISLLGYLSEYKGIRGPHLIIAPKSTL 337
Query: 463 RQWKREAEKWYPSFHVELLHDSAQD 487
W +E +W P V H S ++
Sbjct: 338 SGWAKEFTRWCPFLRVVRFHGSKEE 362
Score = 57 (25.1 bits), Expect = 3.1e-67, Sum P(5) = 3.1e-67
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 959 ADDAVGDKENNL---EIGSSRRKGKEKVDNIGDEV-DEETNILKSLFDAN 1004
ADD K + + +I S +KG+EK + + +V D +N LK D N
Sbjct: 755 ADDIFKSKSSTITDEDIDSILKKGEEKTEQLNSKVKDLASNPLKFQSDGN 804
Score = 55 (24.4 bits), Expect = 3.1e-67, Sum P(5) = 3.1e-67
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 95 DNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKEL 148
D+D D D T Q+G + K + + N+ L +RLK +++ + + ++EL
Sbjct: 103 DDDEDLNDPTIQNGI-NRKDETEEARNERLESIRLEKERLKQIREQQRKQLQEL 155
Score = 37 (18.1 bits), Expect = 3.1e-67, Sum P(5) = 3.1e-67
Identities = 15/54 (27%), Positives = 21/54 (38%)
Query: 1021 EEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKK 1074
+EK +L+ AS V A+ ++ L R D K A A S K
Sbjct: 1112 KEKEKLKLAASGVTASKAKTESPNKTLGKRKDAPPSKPPAKPSKASAKSKPAPK 1165
Score = 37 (18.1 bits), Expect = 8.6e-07, Sum P(4) = 8.6e-07
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 808 YNNSSDVFIFILTTKVG 824
YN+ D+F+ + ++G
Sbjct: 1035 YNDEEDIFLVCMCHRLG 1051
>WB|WBGene00016868 [details] [associations]
symbol:C52B9.8 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:FO080644 PIR:T28937 RefSeq:NP_508736.1
ProteinModelPortal:Q22944 SMR:Q22944 STRING:Q22944 PaxDb:Q22944
EnsemblMetazoa:C52B9.8 GeneID:180705 KEGG:cel:CELE_C52B9.8
UCSC:C52B9.8 CTD:180705 WormBase:C52B9.8 InParanoid:Q22944
NextBio:910548 Uniprot:Q22944
Length = 1336
Score = 613 (220.8 bits), Expect = 3.9e-67, Sum P(4) = 3.9e-67
Identities = 140/400 (35%), Positives = 235/400 (58%)
Query: 516 LSSRNPKKWDLLINRVLRS-ESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNP 572
++ + PK+ + +++S + +L+TT+E + + EK L + W Y ++DEGHR++N
Sbjct: 444 IAYKGPKETRKVFEPIIKSGKFNVLLTTFEYV--IREKALLGKLRWKYMIIDEGHRLKNQ 501
Query: 573 NAEIS-LVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITV 631
+ +++ ++ + Q R+++TG P+QNKL ELW+L +F+ P FE F P
Sbjct: 502 HCKLTEMLNTRFQCQRRLLITGTPLQNKLPELWALLNFLLPSIFSSCSTFEQWFNAPFAT 561
Query: 632 GGYANASPLQVSTAYRCAVV--LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQR 689
G ++++ ++ L ++ P+LLRR+K +V ++LP K E V+ C ++ Q+
Sbjct: 562 TG----EKVELTQEETMLIIRRLHKVLRPFLLRRLKKEVESELPDKMEFVVRCDMSALQK 617
Query: 690 AVYRAFLASSEVEQILDGSRN----SLYGIDV-MRKICNHPDLLER-EQSCQ-------I 736
+Y+ + +LDG N SL + +RK+CNHP L E E+SC+ I
Sbjct: 618 VLYKHM----QKGLLLDGKTNTGSKSLRNTMIHLRKLCNHPFLFENVEESCRNFWDARFI 673
Query: 737 PDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLT 796
S K+++++++L + GHRVL+F Q M+ I+E FL +Y R+DG T
Sbjct: 674 SAVDLYRVSGKLELLSRILPKLQATGHRVLMFFQMTSMMTIVEDFLAGGTIQYLRLDGST 733
Query: 797 PVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERA 855
+R AL+D++N +S+ F+F+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA
Sbjct: 734 KPDERGALLDKFNAPNSEYFLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRA 793
Query: 856 WRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
RIGQK +V V+RLIT ++EEK+ YK + K+++
Sbjct: 794 HRIGQKAEVRVFRLITANSVEEKILAAARYKLNVDEKVIQ 833
Score = 144 (55.7 bits), Expect = 3.9e-67, Sum P(4) = 3.9e-67
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 405 YQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVTLLR 463
YQ G++W+ L GI+ DEMGLGKTIQ ++F+ L P +V+ P++ +
Sbjct: 369 YQIKGLEWMVSLFNNNLNGILADEMGLGKTIQTIAFITYLMEIKKTSGPFLVIVPLSTVP 428
Query: 464 QWKREAEKWYPSFHV 478
W+ E +KW + H+
Sbjct: 429 NWQNEFDKWAANVHL 443
Score = 55 (24.4 bits), Expect = 3.9e-67, Sum P(4) = 3.9e-67
Identities = 25/99 (25%), Positives = 42/99 (42%)
Query: 958 NADDAV--GDKENNLEIGSSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHD-A 1014
N D+ V K +N G+ RR+ E + +E +E+ + D N I S +
Sbjct: 826 NVDEKVIQAGKFDNRSTGAERREILENIIKTENESEEDEEVPNDE-DINDILSRSEEEFE 884
Query: 1015 IMNAHDEEKMRLEEQASQVAQRAAEALRQSR-MLRSRDD 1052
+ D+E+ EQA + R R +LR+ D+
Sbjct: 885 LFQKMDQERFE-NEQAQKAKPRLVGEDEIPRDILRAADE 922
Score = 51 (23.0 bits), Expect = 1.0e-66, Sum P(4) = 1.0e-66
Identities = 21/93 (22%), Positives = 36/93 (38%)
Query: 965 DKENNLEIGSSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKM 1024
+KE + E KGKEK + + D+E KS D +A +E+
Sbjct: 1236 EKEKDKEKEKEEDKGKEKEKHKDKDKDKEHK-KKSREDETEEERRARKEAKRLKRQKEEQ 1294
Query: 1025 RLEEQASQVAQRAAEALRQSRMLRSRDDISVPT 1057
+ + + R A Q R+ + + + S T
Sbjct: 1295 EDDAKLQEKLARKAAKKEQKRLEKEKSESSTGT 1327
Score = 48 (22.0 bits), Expect = 3.9e-67, Sum P(4) = 3.9e-67
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 136 SLKKTKAQLVKELSHFP-KGITSKG--IEHDKFIQDLVKEEHRPKRKSKEAQKPGK-DRS 191
S+++TK + ++EL P + I K + + F+Q L K H R+ KE K + +
Sbjct: 159 SIRRTKYEYLQELKRHPDRAILEKRRKVTNFHFLQSLTK--HA--REFKEFHKRNMLNHT 214
Query: 192 KQQKTV 197
K +K++
Sbjct: 215 KVRKSM 220
Score = 42 (19.8 bits), Expect = 1.7e-66, Sum P(4) = 1.7e-66
Identities = 16/69 (23%), Positives = 28/69 (40%)
Query: 76 EIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLK 135
E VA D ++ + K ND D+ ++ + ED + ++ QH +
Sbjct: 304 EYDGVAEE-DKVKSILDKARNDDDEYENKTKMNIEDYYTTAHGVREEIKEQHFMMGGGNP 362
Query: 136 SLKKTKAQL 144
SLK Q+
Sbjct: 363 SLKLKPYQI 371
Score = 41 (19.5 bits), Expect = 1.1e-65, Sum P(4) = 1.1e-65
Identities = 12/57 (21%), Positives = 27/57 (47%)
Query: 987 GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQ 1043
GDE + N +S D N + H + ++EK + +E+ + + + + L++
Sbjct: 1029 GDEKKRKHNRSESDSDDNSLKKEKKHRKEDHPKEKEKEKKKEKEQEKSTDSEKDLKR 1085
Score = 37 (18.1 bits), Expect = 0.00054, Sum P(3) = 0.00054
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 483 DSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKK 523
+ +D G K++ K D D D E S + R +K
Sbjct: 1244 EKEEDKG--KEKEKHKDKDKDKEHKKKSREDETEEERRARK 1282
>UNIPROTKB|G4MNF9 [details] [associations]
symbol:MGG_06945 "Helicase" species:242507 "Magnaporthe
oryzae 70-15" [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
EMBL:CM001231 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_003709685.1 ProteinModelPortal:G4MNF9
EnsemblFungi:MGG_06945T0 GeneID:2685118 KEGG:mgr:MGG_06945
Uniprot:G4MNF9
Length = 1103
Score = 397 (144.8 bits), Expect = 8.5e-67, Sum P(5) = 8.5e-67
Identities = 70/163 (42%), Positives = 112/163 (68%)
Query: 741 NPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQ 800
+PE K +V+ +LK W+ G +VL+F+ + ++L +L + + Y Y +DG +++
Sbjct: 566 DPEFCGKWRVLKDLLKFWEGNGDKVLVFSHSVKLLQVLRALFQTTHYSYSYLDGSLAIEE 625
Query: 801 RMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQ 860
R ++D++N+ F+F+++TK GG+G N+T AN+V+IFDP WNPS D+QA++RA+RIGQ
Sbjct: 626 RQQIVDDFNSDPQQFVFLISTKAGGVGLNITSANKVVIFDPHWNPSWDLQAQDRAYRIGQ 685
Query: 861 KQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFF 903
+DV V+RL+++GTIEE VY RQIYK N +RR+F
Sbjct: 686 TRDVDVFRLVSQGTIEEIVYARQIYKQQQANIGYNASNERRYF 728
Score = 295 (108.9 bits), Expect = 8.5e-67, Sum P(5) = 8.5e-67
Identities = 68/189 (35%), Positives = 105/189 (55%)
Query: 517 SSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEI 576
S P K D+L + +++TT RL E++ V W V+DE H I+ +EI
Sbjct: 288 SYHGPGKDDVL-DTAKSGRLEVMLTTPATYRLQKERVNTVSWDAVVVDECHNIKERRSEI 346
Query: 577 SLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYAN 636
+ ++ + RI +TG IQNK ELW+L ++ PG+ G ++ + P+T+G N
Sbjct: 347 TKAMTEVNALCRIGLTGTAIQNKYEELWTLLNWTNPGRFGTFGEWKTSISRPLTLGQSHN 406
Query: 637 ASPLQVSTAYRCAVVLRDLIMP-YLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAF 695
A+ ++S A + A L ++P Y LRRMK+ + QLPKK + V+FC LT+ Q Y F
Sbjct: 407 ATLQELSMARKTAKKLVQNLLPDYFLRRMKSLIAHQLPKKRDRVVFCPLTDLQTTAYERF 466
Query: 696 LASSEVEQI 704
+AS EVE +
Sbjct: 467 IASEEVELV 475
Score = 113 (44.8 bits), Expect = 8.5e-67, Sum P(5) = 8.5e-67
Identities = 25/50 (50%), Positives = 32/50 (64%)
Query: 394 IPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA 443
IP I L DYQ GV ++ E + G I+GD+MGLGKT+QV +FL A
Sbjct: 186 IPAPIAQYLRDYQVDGVSFMHEAFVYQRGCILGDDMGLGKTVQVAAFLTA 235
Score = 65 (27.9 bits), Expect = 8.5e-67, Sum P(5) = 8.5e-67
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 450 YKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQD 487
Y +VVCP +++ W++E +W + VE H +D
Sbjct: 259 YYKVLVVCPSSVMENWRQELARW-GWWKVESYHGPGKD 295
Score = 43 (20.2 bits), Expect = 8.5e-67, Sum P(5) = 8.5e-67
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 1103 AGASAGKVLSSSELLARIRGNQENAVGAGLERQFEVASSSANVARFADTRTSR 1155
A A G L ++ + I+ N+E + LE + ++ AD TS+
Sbjct: 767 AEAKVGVYLQDIDIESAIKDNEEAGIPIKLEPGSSGDAEERGASQLADFLTSK 819
Score = 37 (18.1 bits), Expect = 1.1e-30, Sum P(3) = 1.1e-30
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 113 KSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKEL 148
K+++ + P + H T L +KT +LV+ L
Sbjct: 392 KTSI-SRPLTLGQSHNATLQELSMARKTAKKLVQNL 426
>CGD|CAL0005422 [details] [associations]
symbol:ISW2 species:5476 "Candida albicans" [GO:0001410
"chlamydospore formation" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0071280 "cellular response to copper ion"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0008623 "CHRAC" evidence=IEA] [GO:0060195 "negative regulation
of antisense RNA transcription" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0000183 "chromatin
silencing at rDNA" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0046020 "negative
regulation of transcription from RNA polymerase II promoter by
pheromones" evidence=IEA] [GO:0006348 "chromatin silencing at
telomere" evidence=IEA] [GO:0016584 "nucleosome positioning"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 588 (212.0 bits), Expect = 1.2e-66, Sum P(4) = 1.2e-66
Identities = 153/440 (34%), Positives = 232/440 (52%)
Query: 516 LSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAE 575
L ++ ++ +++ ++ +LIT++E + L W Y V+DE HRI+N ++
Sbjct: 219 LQGDKEQRASIIKDQLYTAKFDVLITSFEMILREKSALQKFRWEYIVVDEAHRIKNEDSS 278
Query: 576 ISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYA 635
+S + + + +R+++TG P+QN L ELW+L +F+ P G F+ F
Sbjct: 279 LSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDSDQFDEAF-------DNQ 331
Query: 636 NASPLQVSTAYRC---AVV-LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAV 691
N+ L R AV L L+ P+LLRR+KADV L K E ++ +T+ Q
Sbjct: 332 NSEELDEEEKQRRQDKAVSELHQLLSPFLLRRVKADVEKSLLPKIETNVYIGMTDMQVEW 391
Query: 692 YRAFLASS--EVEQIL---DGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPER-- 744
Y+ L V ++ +G L + +RK CNHP L + + P Y E
Sbjct: 392 YKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPG--PPYTTDEHLV 449
Query: 745 --SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRM 802
S KM ++ ++LK +K +G RVL+F+Q ++LDILE + YEY R+DG T + R+
Sbjct: 450 YNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRI 509
Query: 803 ALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQK 861
IDEYN S+ FIF+LTT+ GGLG NLT A+ VI++D DWNP D+QA +RA RIGQK
Sbjct: 510 EAIDEYNAPDSEKFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQK 569
Query: 862 QDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFK-ARNMKD-LFTLNDDGN 919
+ V V+R +T IEEKV R K L +++ +Q N KD L + G
Sbjct: 570 KQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVIQQGRQMNSNNNVGNSKDDLIGMIQHGA 629
Query: 920 GGSTETSNIFSQLSEDVNVV 939
E S + L +DV +
Sbjct: 630 KEVFENSK-GTMLDDDVEEI 648
Score = 183 (69.5 bits), Expect = 1.2e-66, Sum P(4) = 1.2e-66
Identities = 41/102 (40%), Positives = 58/102 (56%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF-SNMYKPSIVVCPVT 460
L +YQ G+ WL L+ R GI+ DEMGLGKT+Q +SFLG L + ++ P IV+ P +
Sbjct: 139 LREYQIQGLNWLISLYENRLSGILADEMGLGKTLQTISFLGYLRYIKHIDGPFIVIVPKS 198
Query: 461 LLRQWKREAEKWYPSFHVELLH-DSAQDLGFRKKRAKSSDTD 501
L W+RE KW P +V +L D Q K + ++ D
Sbjct: 199 TLDNWRREFAKWTPDVNVVVLQGDKEQRASIIKDQLYTAKFD 240
Score = 38 (18.4 bits), Expect = 1.2e-66, Sum P(4) = 1.2e-66
Identities = 13/66 (19%), Positives = 32/66 (48%)
Query: 60 STSQEKLYNK-LRAVEFEIGAVAST--VDHLRRVSTKEDNDIDD-GDSTEQDGREDEKSA 115
+ S++ + K +R ++ + S+ + RR T+++ D + D QD + + +
Sbjct: 67 NASKDPAFKKRIREIDSKTSFKESSKKAKNSRRRKTEKEEDAELLQDEEHQDDEDHQHTV 126
Query: 116 VQASPN 121
+ SP+
Sbjct: 127 MTESPS 132
Score = 37 (18.1 bits), Expect = 1.2e-66, Sum P(4) = 1.2e-66
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 965 DKENNLEIGSSRRKGKEKVDNIGDEVDEE 993
D E+++ R+ +EK++N +EE
Sbjct: 795 DDEDDMTRDEKRKIAQEKINNAVALTEEE 823
>UNIPROTKB|Q5A310 [details] [associations]
symbol:ISW2 "Putative uncharacterized protein ISW2"
species:237561 "Candida albicans SC5314" [GO:0001410 "chlamydospore
formation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0035690 "cellular response to drug" evidence=IMP]
[GO:0071280 "cellular response to copper ion" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 CGD:CAL0005422 GO:GO:0005524
GO:GO:0001410 GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0071280 GO:GO:0035690 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 EMBL:AACQ01000074 GO:GO:0030447 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224 RefSeq:XP_716066.1
ProteinModelPortal:Q5A310 STRING:Q5A310 GeneID:3642235
KEGG:cal:CaO19.7401 Uniprot:Q5A310
Length = 1056
Score = 588 (212.0 bits), Expect = 1.2e-66, Sum P(4) = 1.2e-66
Identities = 153/440 (34%), Positives = 232/440 (52%)
Query: 516 LSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAE 575
L ++ ++ +++ ++ +LIT++E + L W Y V+DE HRI+N ++
Sbjct: 219 LQGDKEQRASIIKDQLYTAKFDVLITSFEMILREKSALQKFRWEYIVVDEAHRIKNEDSS 278
Query: 576 ISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYA 635
+S + + + +R+++TG P+QN L ELW+L +F+ P G F+ F
Sbjct: 279 LSKIIRLFYSRNRLLITGTPLQNNLHELWALLNFLLPDVFGDSDQFDEAF-------DNQ 331
Query: 636 NASPLQVSTAYRC---AVV-LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAV 691
N+ L R AV L L+ P+LLRR+KADV L K E ++ +T+ Q
Sbjct: 332 NSEELDEEEKQRRQDKAVSELHQLLSPFLLRRVKADVEKSLLPKIETNVYIGMTDMQVEW 391
Query: 692 YRAFLASS--EVEQIL---DGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPER-- 744
Y+ L V ++ +G L + +RK CNHP L + + P Y E
Sbjct: 392 YKRLLEKDIDAVNGVVGKREGKTRLLNIVMQLRKCCNHPYLFDGAEPG--PPYTTDEHLV 449
Query: 745 --SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRM 802
S KM ++ ++LK +K +G RVL+F+Q ++LDILE + YEY R+DG T + R+
Sbjct: 450 YNSGKMIILDKMLKKFKAEGSRVLIFSQMSRVLDILEDYCYFRDYEYCRIDGSTSHEDRI 509
Query: 803 ALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQK 861
IDEYN S+ FIF+LTT+ GGLG NLT A+ VI++D DWNP D+QA +RA RIGQK
Sbjct: 510 EAIDEYNAPDSEKFIFLLTTRAGGLGINLTSADIVILYDSDWNPQADLQAMDRAHRIGQK 569
Query: 862 QDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFK-ARNMKD-LFTLNDDGN 919
+ V V+R +T IEEKV R K L +++ +Q N KD L + G
Sbjct: 570 KQVKVFRFVTEKAIEEKVLERAAQKLRLDQLVIQQGRQMNSNNNVGNSKDDLIGMIQHGA 629
Query: 920 GGSTETSNIFSQLSEDVNVV 939
E S + L +DV +
Sbjct: 630 KEVFENSK-GTMLDDDVEEI 648
Score = 183 (69.5 bits), Expect = 1.2e-66, Sum P(4) = 1.2e-66
Identities = 41/102 (40%), Positives = 58/102 (56%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF-SNMYKPSIVVCPVT 460
L +YQ G+ WL L+ R GI+ DEMGLGKT+Q +SFLG L + ++ P IV+ P +
Sbjct: 139 LREYQIQGLNWLISLYENRLSGILADEMGLGKTLQTISFLGYLRYIKHIDGPFIVIVPKS 198
Query: 461 LLRQWKREAEKWYPSFHVELLH-DSAQDLGFRKKRAKSSDTD 501
L W+RE KW P +V +L D Q K + ++ D
Sbjct: 199 TLDNWRREFAKWTPDVNVVVLQGDKEQRASIIKDQLYTAKFD 240
Score = 38 (18.4 bits), Expect = 1.2e-66, Sum P(4) = 1.2e-66
Identities = 13/66 (19%), Positives = 32/66 (48%)
Query: 60 STSQEKLYNK-LRAVEFEIGAVAST--VDHLRRVSTKEDNDIDD-GDSTEQDGREDEKSA 115
+ S++ + K +R ++ + S+ + RR T+++ D + D QD + + +
Sbjct: 67 NASKDPAFKKRIREIDSKTSFKESSKKAKNSRRRKTEKEEDAELLQDEEHQDDEDHQHTV 126
Query: 116 VQASPN 121
+ SP+
Sbjct: 127 MTESPS 132
Score = 37 (18.1 bits), Expect = 1.2e-66, Sum P(4) = 1.2e-66
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 965 DKENNLEIGSSRRKGKEKVDNIGDEVDEE 993
D E+++ R+ +EK++N +EE
Sbjct: 795 DDEDDMTRDEKRKIAQEKINNAVALTEEE 823
>WB|WBGene00002169 [details] [associations]
symbol:isw-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0000003 "reproduction" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
[GO:0040026 "positive regulation of vulval development"
evidence=IGI] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0008340 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0016246 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0000790 GO:GO:0040035 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0004386 GO:GO:0040027 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GO:GO:0040026 EMBL:FO081312 PIR:S44645
RefSeq:NP_498468.2 ProteinModelPortal:P41877 SMR:P41877
STRING:P41877 PaxDb:P41877 EnsemblMetazoa:F37A4.8 GeneID:175944
KEGG:cel:CELE_F37A4.8 UCSC:F37A4.8 CTD:175944 WormBase:F37A4.8
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 InParanoid:P41877
KO:K11654 OMA:MQRKWYK NextBio:890418 SUPFAM:SSF101224
Uniprot:P41877
Length = 1009
Score = 570 (205.7 bits), Expect = 2.7e-66, Sum P(2) = 2.7e-66
Identities = 143/409 (34%), Positives = 230/409 (56%)
Query: 514 GNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPN 573
G+ ++RN +L + +L + + TTYE + + +L + W Y ++DE HRI+N
Sbjct: 214 GDEAARN----QVLRDVILPQKFDVCCTTYEMMLKVKTQLKKLNWRYIIIDEAHRIKNEK 269
Query: 574 AEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGG 633
+++S ++L + +R+++TG P+QN L ELW+L +F+ P F++ F+ G
Sbjct: 270 SKLSETVRELNSENRLLITGTPLQNNLHELWALLNFLLPDIFTSSDDFDSWFSNDAMSG- 328
Query: 634 YANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYR 693
N +Q R L ++ P+LLRR+K+DV L K E ++ L++ QR Y
Sbjct: 329 --NTDLVQ-----R----LHKVLQPFLLRRIKSDVEKSLLPKKEVKVYVGLSKMQREWYT 377
Query: 694 AFLASSEVEQILDGS----RNSLYGIDV-MRKICNHPDLLEREQSCQ--IPDYGNPERSE 746
L +++ I++G+ + L I + +RK NHP L + + D + S
Sbjct: 378 KVLMK-DID-IINGAGKVEKARLMNILMHLRKCVNHPYLFDGAEPGPPFTTDQHLVDNSG 435
Query: 747 KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALID 806
KM V+ ++L +K+QG RVL+F+Q +MLD+LE F YEY R+DG TP + R I+
Sbjct: 436 KMVVLDKLLMKFKEQGSRVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIE 495
Query: 807 EYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVT 865
YN S FIF+LTT+ GGLG NL A+ VII+D DWNP +D+QA +RA RIGQK+ V
Sbjct: 496 AYNAPDSKKFIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVR 555
Query: 866 VYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTL 914
V+RLIT T++E++ + K L N +++ + K D+ ++
Sbjct: 556 VFRLITENTVDERIIEKAEAKLRLDNIVIQQGRMSEAQKTLGKGDMISM 604
Score = 187 (70.9 bits), Expect = 2.7e-66, Sum P(2) = 2.7e-66
Identities = 40/96 (41%), Positives = 56/96 (58%)
Query: 393 KIPESIFNN-LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMY 450
K P I N + DYQ G+ WL L + GI+ DEMGLGKT+Q +S +G + H+ N
Sbjct: 122 KSPFYIENGEMRDYQVRGLNWLASLQHNKINGILADEMGLGKTLQTISMIGYMKHYKNKA 181
Query: 451 KPSIVVCPVTLLRQWKREAEKWYPSFH-VELLHDSA 485
P +V+ P + L+ W E +KW PS + V L+ D A
Sbjct: 182 SPHLVIVPKSTLQNWANEFKKWCPSINAVVLIGDEA 217
Score = 44 (20.5 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QR ++ MKD+ +N G NI L + VN
Sbjct: 372 QREWYTKVLMKDIDIINGAGKVEKARLMNILMHLRKCVN 410
>MGI|MGI:1935127 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000733 "DNA strand renaturation" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0007420 "brain
development" evidence=ISO;IMP] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0016589 "NURF complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IMP] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=ISO] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=ISO]
[GO:0090537 "CERF complex" evidence=ISO] [GO:2000177 "regulation of
neural precursor cell proliferation" evidence=IGI;IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 MGI:MGI:1935127 GO:GO:0005524 GO:GO:0005634
GO:GO:0045893 GO:GO:0007420 GO:GO:0030182 GO:GO:0003677
GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0006338
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016589 GO:GO:0036310 GO:GO:0008094
GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862 SUPFAM:SSF101224
CTD:6594 HOVERGEN:HBG056329 KO:K11727 EMBL:AF325920 EMBL:AK030741
EMBL:AL671903 EMBL:BC057115 IPI:IPI00314654 IPI:IPI00761324
RefSeq:NP_444353.3 UniGene:Mm.229151 HSSP:Q24368
ProteinModelPortal:Q6PGB8 SMR:Q6PGB8 STRING:Q6PGB8
PhosphoSite:Q6PGB8 PaxDb:Q6PGB8 PRIDE:Q6PGB8
Ensembl:ENSMUST00000077569 Ensembl:ENSMUST00000088973
Ensembl:ENSMUST00000101616 GeneID:93761 KEGG:mmu:93761
UCSC:uc009tbl.2 UCSC:uc009tbm.2 InParanoid:B1AUP6 OrthoDB:EOG44J2H9
NextBio:351647 Bgee:Q6PGB8 Genevestigator:Q6PGB8
GermOnline:ENSMUSG00000031099 Uniprot:Q6PGB8
Length = 1046
Score = 580 (209.2 bits), Expect = 3.6e-66, Sum P(4) = 3.6e-66
Identities = 141/393 (35%), Positives = 222/393 (56%)
Query: 529 NRVLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV 586
+ ++ E + +T+YE + + EK + W Y V+DE HRI+N +++S + ++ ++
Sbjct: 280 DEMMPGEWDVCVTSYEMV--IKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKST 337
Query: 587 HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAY 646
+R+++TG P+QN L ELW+L +F+ P F++ F +G
Sbjct: 338 NRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQ--------KLVE 389
Query: 647 RCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQI-L 705
R VL+ P+LLRR+K DV LP K E ++ L++ QR Y L +++ +
Sbjct: 390 RLHAVLK----PFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMK-DIDVLNS 444
Query: 706 DGSRNSLYGIDVM---RKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVW 758
G + + ++++ RK CNHP L + + P Y E S KM + ++L
Sbjct: 445 SGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG--PPYTTDEHIVGNSGKMVALDKLLARI 502
Query: 759 KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYN--NSSDVFI 816
K+QG RVL+F+Q ++LDILE + + GYEY R+DG TP ++R ID +N NSS FI
Sbjct: 503 KEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAFNAPNSSK-FI 561
Query: 817 FILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIE 876
F+L+T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQK+ V V+RLIT T+E
Sbjct: 562 FMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 621
Query: 877 EKVYHRQIYKHFLTNKILKNPQQRRFFKARNMK 909
E++ R K L + ++ QQ R ++ K
Sbjct: 622 ERIVERAEIKLRLDSIVI---QQGRLIDQQSNK 651
Score = 172 (65.6 bits), Expect = 3.6e-66, Sum P(4) = 3.6e-66
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL L+ GI+ DEMGLGKT+Q ++ LG L H+ N+ P +V+ P +
Sbjct: 187 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 246
Query: 461 LLRQWKREAEKWYPSFHV 478
L W E ++W PS V
Sbjct: 247 TLHNWMNEFKRWVPSLRV 264
Score = 49 (22.3 bits), Expect = 2.8e-08, Sum P(4) = 2.8e-08
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QR ++ MKD+ LN G NI QL + N
Sbjct: 427 QREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCN 465
Score = 47 (21.6 bits), Expect = 3.6e-66, Sum P(4) = 3.6e-66
Identities = 20/81 (24%), Positives = 36/81 (44%)
Query: 244 QQPGPSNKQNVPDEQEARSNDPFSASVDRALRMMSE-----AAQARPSTKLLDPESLPKL 298
+QPGPS + A + ++ ++ S AA+A S K +DPE K+
Sbjct: 27 EQPGPSTFKEEGAAAAATEGTTATEKGEKKEKITSPFQLKLAAKASKSEKEMDPEYEEKM 86
Query: 299 -DGPTRPFQRLKTPFRMPQSE 318
+ P + + + F + Q+E
Sbjct: 87 VNMPLKADRAKRFEFLLKQTE 107
Score = 43 (20.2 bits), Expect = 3.6e-66, Sum P(4) = 3.6e-66
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVD 991
++ N I ++ + G++ +DNI EV+
Sbjct: 855 RDFNQFIKANEKYGRDDIDNIAREVE 880
Score = 38 (18.4 bits), Expect = 8.6e-08, Sum P(4) = 8.6e-08
Identities = 7/16 (43%), Positives = 14/16 (87%)
Query: 1106 SAGKVLSSSELLARIR 1121
++GK+++ +LLARI+
Sbjct: 488 NSGKMVALDKLLARIK 503
>WB|WBGene00004204 [details] [associations]
symbol:swsn-4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040010 "positive
regulation of growth rate" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006355
GO:GO:0003677 GO:GO:0040035 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 OMA:QKKYTIS InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:Z68751 EMBL:Z68341 EMBL:AF230280 PIR:T20488
RefSeq:NP_502082.1 UniGene:Cel.23435 ProteinModelPortal:G5EF53
SMR:G5EF53 EnsemblMetazoa:F01G4.1 GeneID:178015
KEGG:cel:CELE_F01G4.1 CTD:178015 WormBase:F01G4.1 NextBio:899366
Uniprot:G5EF53
Length = 1474
Score = 626 (225.4 bits), Expect = 3.9e-66, Sum P(4) = 3.9e-66
Identities = 136/381 (35%), Positives = 224/381 (58%)
Query: 530 RVLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQL-QTV 586
++ + +L+TTYE + + EK L + W Y ++DEGHR++N N +++L+
Sbjct: 626 QIRKGAFNVLMTTYEYV--IKEKALLGKIRWKYMIIDEGHRLKNHNCKLTLMLNGFFHAQ 683
Query: 587 HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAY 646
HR+++TG P+QNKL ELW+L +F+ P FE F P G ++++
Sbjct: 684 HRLLLTGTPLQNKLPELWALLNFLLPSIFSSCGTFEQWFNAPFATTG----EKVELNQEE 739
Query: 647 RCAVV--LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVE-Q 703
++ L ++ P+LLRR+K +V +QLP KTE+V+ C + Q+ +YR ++ +
Sbjct: 740 TMLIIRRLHKVLRPFLLRRLKKEVESQLPDKTEYVIKCDQSALQKVIYRHMQKGLLLDAK 799
Query: 704 ILDGSRNSLYGIDVMRKICNHPDLLER-EQSCQ----IPDYGNPERSE---KMKVVAQVL 755
+ G+R+ + + +RK+CNHP L E SC+ + + + K++++ ++L
Sbjct: 800 MSSGARSLMNTVVHLRKLCNHPFLFPNIEDSCRAYWKVNEVNGTDLMRVAGKLELLDRIL 859
Query: 756 KVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDV 814
K GHR+L+F Q M++I E FL Y Y R+DG T +R L+ ++N +SD+
Sbjct: 860 PKLKATGHRILMFFQMTSMMNIFEDFLNFRRYTYLRLDGSTKPDERGDLLTQFNAPNSDL 919
Query: 815 FIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGT 874
F+F+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RIGQK++V V RLIT +
Sbjct: 920 FLFMLSTRAGGLGLNLQTADTVIIFDSDWNPHQDMQAQDRAHRIGQKKEVRVLRLITANS 979
Query: 875 IEEKVYHRQIYKHFLTNKILK 895
+EEK+ YK + K+++
Sbjct: 980 VEEKILAAARYKLNVDEKVIQ 1000
Score = 149 (57.5 bits), Expect = 3.9e-66, Sum P(4) = 3.9e-66
Identities = 43/142 (30%), Positives = 64/142 (45%)
Query: 348 EDTRLEENE-DSRDSLDMSSYXXXXXXXXXXXXXXXPPFVTLEGGLKIPESIFNNLFDYQ 406
E R EE+E D + M+ Y T+ GG P + L YQ
Sbjct: 486 EKARNEEDEYDQKTKKQMADYYATAHKIKEKVVKQH---TTMGGG--DPNLL---LKPYQ 537
Query: 407 KVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVTLLRQW 465
G++W+ L+ GI+ DEMGLGKTIQ +S + L P +V+ P++ L W
Sbjct: 538 IKGLEWMVSLYNNNLNGILADEMGLGKTIQTISLVTYLMEVKQNNGPYLVIVPLSTLSNW 597
Query: 466 KREAEKWYPSFHVELLHDSAQD 487
+ E KW PS +++ +D
Sbjct: 598 QNEFAKWAPSV-TTIIYKGTKD 618
Score = 40 (19.1 bits), Expect = 3.9e-66, Sum P(4) = 3.9e-66
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 64 EKLYNKLRAVEFEIGAVASTV-DH--LRRVSTKEDNDIDDGDSTEQDGRED--EKSAVQA 118
++L L+ + + ++ S V H + KED I+ G+ +++ R E+S +A
Sbjct: 360 QRLVYLLQQTDEYVDSLCSLVRQHQNTEKKKKKEDKKIEKGNQMDEEARVHVRERSTGKA 419
Query: 119 SPND 122
D
Sbjct: 420 LTGD 423
Score = 38 (18.4 bits), Expect = 3.9e-66, Sum P(4) = 3.9e-66
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 965 DKENNLEIGSSRRKGKEKVDNIGDEVDE 992
+ ENN + +++ K K+ + DE D+
Sbjct: 1138 EDENNQAVAERKKQRKRKMAGL-DENDD 1164
>POMBASE|SPAC11E3.01c [details] [associations]
symbol:swr1 "SNF2 family helicase Swr1" species:4896
"Schizosaccharomyces pombe" [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISM] [GO:0005524
"ATP binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=IPI] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0043486 "histone exchange" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC11E3.01c GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0000812 GO:GO:0004003 GO:GO:0043486
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 PROSITE:PS51204 KO:K11681 HOGENOM:HOG000186095
OrthoDB:EOG49S9FK PIR:T37528 RefSeq:XP_001713118.1
ProteinModelPortal:O13682 STRING:O13682 EnsemblFungi:SPAC11E3.01c.1
GeneID:3361561 KEGG:spo:SPAC11E3.01c OMA:VKNEREG NextBio:20811602
Uniprot:O13682
Length = 1288
Score = 382 (139.5 bits), Expect = 4.5e-66, Sum P(4) = 4.5e-66
Identities = 74/172 (43%), Positives = 112/172 (65%)
Query: 747 KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALID 806
K++V+ ++LK GHRVL+F Q ++LDILE FL G+ Y R+DG T ++QR L +
Sbjct: 992 KLQVLDRLLKDLVSNGHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQILTE 1051
Query: 807 EYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866
+NN + +FIL+T+ GGLG NLTGA+ VI +D DWNP D QA++R+ RIGQ +DV +
Sbjct: 1052 RFNNDDKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQDRSHRIGQTRDVHI 1111
Query: 867 YRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFFKARNMKDLFTLNDD 917
YRLI+ T+E + R K L +++ + +F+ ++ DLF L+D+
Sbjct: 1112 YRLISEYTVESNMLRRANQKRMLDKIVIQGGEFTTEWFRKADVLDLFDLDDE 1163
Score = 271 (100.5 bits), Expect = 4.5e-66, Sum P(4) = 4.5e-66
Identities = 67/201 (33%), Positives = 108/201 (53%)
Query: 540 ITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNK 599
IT+Y+ + + +W Y +LDE H I+N ++ HR+++TG P+QN
Sbjct: 551 ITSYQLVLQDHQPFRRKKWQYMILDEAHNIKNFRSQRWQSLLNFNAEHRLLLTGTPLQNN 610
Query: 600 LSELWSLFDFVFPGKL-------GVLPVFEAEFAVPIT--VGGYANASPLQVSTAYRCAV 650
L ELWSL F+ P + L F+ F+ P+ + + +P ++T +
Sbjct: 611 LVELWSLLYFLMPAGVTQNNSAFANLKDFQDWFSKPMDRLIEEGQDMNPEAMNTVAKLHR 670
Query: 651 VLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL-DGSR 709
VLR PYLLRR+K +V Q+P K EHV++C L++ QR +Y F+ + +IL G+
Sbjct: 671 VLR----PYLLRRLKTEVEKQMPAKYEHVVYCQLSKRQRFLYDDFINRARTREILASGNF 726
Query: 710 NSLYG-IDVMRKICNHPDLLE 729
S+ + +RK+CNHP+L E
Sbjct: 727 MSIINCLMQLRKVCNHPNLHE 747
Score = 173 (66.0 bits), Expect = 4.5e-66, Sum P(4) = 4.5e-66
Identities = 42/141 (29%), Positives = 72/141 (51%)
Query: 392 LKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM-Y 450
+++P L +YQ+ G++WL LH GI+ DEMGLGKTIQ ++ L L +
Sbjct: 437 IQVPFLFRGTLREYQQYGLEWLTALHDSNTNGILADEMGLGKTIQTIALLAHLACEKENW 496
Query: 451 KPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDS 510
P +++ P +++ W+ E +K+ P F + + + Q+ RK++ +S D +
Sbjct: 497 GPHLIIVPTSVMLNWEMEFKKFLPGFKILTYYGNPQE---RKEK-RSGWYKPDTWHVCIT 552
Query: 511 DYEGNLSSRNP---KKWDLLI 528
Y+ L P KKW +I
Sbjct: 553 SYQLVLQDHQPFRRKKWQYMI 573
Score = 42 (19.8 bits), Expect = 4.5e-66, Sum P(4) = 4.5e-66
Identities = 18/89 (20%), Positives = 38/89 (42%)
Query: 65 KLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMT 124
K + L +V+ E+ S D ++ + +E+ + D E EDE++ + +
Sbjct: 252 KTSDDLLSVD-ELKLKYSNPDLIKNIEREEEAEETSDD--EPLSSEDEENEDEDITEESN 308
Query: 125 LQHALTADRLKSLKKTKAQLVKELSHFPK 153
L+ +D+ + + K L + F K
Sbjct: 309 LRKRKVSDKTRVVNKHPPSLRRSRRFFAK 337
Score = 41 (19.5 bits), Expect = 5.7e-66, Sum P(4) = 5.7e-66
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 106 QDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFP 152
+DG D K A + ++ L+H + R K +A + EL P
Sbjct: 64 EDGDHDPKEAKELVFREVQLRHRINEFRKKGYFTAEAPV--ELKKAP 108
Score = 40 (19.1 bits), Expect = 7.2e-66, Sum P(4) = 7.2e-66
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 90 VSTKEDNDIDDGDSTEQDGREDEKSAV 116
V KED I DG ST++D + +++ V
Sbjct: 352 VMKKED--ITDGVSTKKDLNDGDQNEV 376
Score = 37 (18.1 bits), Expect = 1.3e-28, Sum P(3) = 1.3e-28
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 461 LLRQWKREAEKWYPSFHVELLH 482
LLR+ K E EK P+ + +++
Sbjct: 676 LLRRLKTEVEKQMPAKYEHVVY 697
>ASPGD|ASPL0000041040 [details] [associations]
symbol:AN9077 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0000812 "Swr1
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001306 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 EMBL:AACD01000169 KO:K11681
RefSeq:XP_682346.1 STRING:Q5ARK3 GeneID:2868023 KEGG:ani:AN9077.2
HOGENOM:HOG000186095 OMA:YGNQEER OrthoDB:EOG49S9FK Uniprot:Q5ARK3
Length = 1698
Score = 349 (127.9 bits), Expect = 5.7e-66, Sum P(5) = 5.7e-66
Identities = 75/202 (37%), Positives = 118/202 (58%)
Query: 747 KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALID 806
K++ + ++L+ K GHR L+F Q +MLD+LE FL G+ Y R+DG T V+QR L D
Sbjct: 1374 KLQRLDKLLRDLKAGGHRALIFTQMTKMLDVLEQFLNIHGHRYLRLDGTTKVEQRQILTD 1433
Query: 807 EYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866
+NN + + FIL+++ GGLG NLTGA+ VI +D DWNP+ D Q ++R RIGQ +DV +
Sbjct: 1434 RFNNDNRILAFILSSRSGGLGINLTGADTVIFYDLDWNPAMDKQCQDRCHRIGQTRDVHI 1493
Query: 867 YRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFFKARNMKDLF----TLNDDGNGG 921
YR ++ TIE + + K L + +++ + +F +++D+ L D+ +
Sbjct: 1494 YRFVSEYTIESNILRKANQKRMLDDVVIQEGEFTTDYFTKLDVRDMIGNDEALKDEASAA 1553
Query: 922 S--------TETSNIFSQLSED 935
T TS +F Q +ED
Sbjct: 1554 MDRVLENRVTNTSRVFEQ-AED 1574
Score = 294 (108.6 bits), Expect = 5.7e-66, Sum P(5) = 5.7e-66
Identities = 78/230 (33%), Positives = 122/230 (53%)
Query: 512 YEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVE-WGYAVLDEGHRIR 570
Y GN R K+ + + + +LIT+Y QL L +++L W Y +LDE H I+
Sbjct: 905 YYGNQEERRQKRRGWMDD----NSWNVLITSY-QLVLQDQQVLKRRSWHYMILDEAHNIK 959
Query: 571 NPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFP---GKLGV-----LPVFE 622
N ++ +T R+++TG P+QN L+ELWSL F+ P + G+ L F
Sbjct: 960 NFRSQRWQALLTFRTRARLLLTGTPLQNNLTELWSLLFFLMPTDGDEAGIEGFADLRNFS 1019
Query: 623 AEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFC 682
F P+ + A + L ++ PY+LRR+KADV Q+P K EHV++C
Sbjct: 1020 EWFRRPVEQI-LEHGRETMDDEAKQVVTKLHTVLRPYILRRLKADVEKQMPGKYEHVVYC 1078
Query: 683 SLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVM---RKICNHPDLLE 729
L++ QR +Y F++ ++ ++ L S N L I+ + RK+CNHPDL E
Sbjct: 1079 RLSKRQRYLYDGFMSRAQTKETL-ASGNYLSIINCLMQLRKVCNHPDLFE 1127
Score = 182 (69.1 bits), Expect = 5.7e-66, Sum P(5) = 5.7e-66
Identities = 42/115 (36%), Positives = 64/115 (55%)
Query: 391 GLK--IPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN 448
GLK IP + L +YQ G+ WL L+ GI+ DEMGLGKTIQ ++ L L +
Sbjct: 812 GLKTPIPHLLRGTLREYQHFGLDWLAGLYSNHINGILADEMGLGKTIQTIALLAHLAVEH 871
Query: 449 -MYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDN 502
++ P +VV P +++ W+ E +KW P F + + + ++ R+KR D DN
Sbjct: 872 GVWGPHLVVVPTSVILNWEMEFKKWCPGFKIMTYYGNQEER--RQKRRGWMD-DN 923
Score = 50 (22.7 bits), Expect = 5.7e-66, Sum P(5) = 5.7e-66
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 246 PGPSNKQNVPDEQEARSNDPFSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGP 301
P S N+ + E + ++P+ + RA SEA+ +TK +PES+ ++ P
Sbjct: 748 PVMSPATNLLKQIERQQHEPYHS---RAAS--SEASPGTVATKPSEPESVSSIEAP 798
Score = 48 (22.0 bits), Expect = 5.7e-66, Sum P(5) = 5.7e-66
Identities = 24/95 (25%), Positives = 44/95 (46%)
Query: 48 KPHDKSESIDPSSTSQEKLYNKLRA-VEFEIGAVA--STVDHLRRVSTKE--DNDIDDGD 102
K D+ ++D + L+ K R + E G+ A +T D V T +ND ++G+
Sbjct: 431 KAKDQ-RALDRAIKQSTMLFEKRRLEILGETGSDAPETTTDD-EEVETDNGSENDDEEGE 488
Query: 103 S-----TEQDGREDEKSAVQASPNDMTLQHALTAD 132
S TE++ +D V + ++ L++A D
Sbjct: 489 SNMSTETEEEDGDDRDDDVGLTAEELRLKYANLPD 523
Score = 39 (18.8 bits), Expect = 4.9e-65, Sum P(5) = 4.9e-65
Identities = 13/71 (18%), Positives = 32/71 (45%)
Query: 115 AVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKG--IEHDKFIQDLVKE 172
A++ + + A+ L S + A L + P+ + + + H + + L+ +
Sbjct: 299 ALEEAQKRRQVTEAMEPGGLLSSEVCSAFLPEPQEELPQQFSHQDHLVAHALYFKKLLDK 358
Query: 173 EHRPKRKSKEA 183
EHR R++ ++
Sbjct: 359 EHRAHRQAAKS 369
Score = 39 (18.8 bits), Expect = 1.1e-25, Sum P(4) = 1.1e-25
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 302 TRPFQRLKTPFRMPQSEESEVE 323
TRP + T F MP+S +E E
Sbjct: 1128 TRP---ISTSFAMPRSVATEFE 1146
Score = 38 (18.4 bits), Expect = 6.2e-65, Sum P(5) = 6.2e-65
Identities = 19/78 (24%), Positives = 34/78 (43%)
Query: 121 NDMTLQHALTADRLKSLKKTKAQLVKELSH---------FPKGITSKGIEHDKFIQ--DL 169
ND +H RL+ K A ++ SH F + + ++G + + D
Sbjct: 240 NDGQDEHGQRIQRLRIKVKKPALSIQHPSHVLPTRKYGSFKEWLENEGTGPGRMLTMTDA 299
Query: 170 VKEEHRPKRKSKEAQKPG 187
+ EE + +R+ EA +PG
Sbjct: 300 L-EEAQKRRQVTEAMEPG 316
>DICTYBASE|DDB_G0267638 [details] [associations]
symbol:DDB_G0267638 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 dictyBase:DDB_G0267638 GO:GO:0005524
GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0003682 SUPFAM:SSF46689
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR014012 PROSITE:PS51204 KO:K11320 RefSeq:XP_647182.1
ProteinModelPortal:Q55GK2 EnsemblProtists:DDB0220518 GeneID:8615986
KEGG:ddi:DDB_G0267638 InParanoid:Q55GK2 OMA:ISFEAFA Uniprot:Q55GK2
Length = 3069
Score = 378 (138.1 bits), Expect = 1.6e-65, Sum P(6) = 1.6e-65
Identities = 80/197 (40%), Positives = 117/197 (59%)
Query: 747 KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALID 806
K++ +A +L+ K QGHR L+F Q +MLDI E+FL Y Y R+DG T + +R L +
Sbjct: 1380 KLQQLAILLRRLKQQGHRALIFTQMTKMLDIFETFLNLHAYTYLRLDGSTKIDKRQVLTE 1439
Query: 807 EYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866
+N +F+FIL+T+ GGLG NLTGA+ VI +D DWNPS D QA++R RIGQ ++V +
Sbjct: 1440 RFNTDPKIFLFILSTRSGGLGLNLTGADTVIFYDTDWNPSMDAQAQDRCHRIGQTREVNI 1499
Query: 867 YRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFFKARNMK---DLFTLNDDGNGGS 922
YR IT+ TIEE + + K L ++K + FFK N+ + T+ D N
Sbjct: 1500 YRFITQHTIEENILKKSNQKRQLDKMVIKAGEFTTDFFKNLNLSTKSSIDTIKD--NVTQ 1557
Query: 923 TETSNIFSQLSEDVNVV 939
E N Q ++ +V+
Sbjct: 1558 QEWENAVEQAEDESDVL 1574
Score = 282 (104.3 bits), Expect = 1.6e-65, Sum P(6) = 1.6e-65
Identities = 69/194 (35%), Positives = 102/194 (52%)
Query: 540 ITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
IT+Y + + + L+ +W Y +LDE H I+N + T R+++TG P+Q
Sbjct: 885 ITSYSMV--MSDHLIFRRKKWVYMILDEAHVIKNFKTQRWQNMLHFNTERRLLLTGTPLQ 942
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N L ELWSL F+ P F+ F+ P+T G + R VLR
Sbjct: 943 NNLMELWSLMHFLMPDIFQSHREFQDWFSNPVT-GMIEGGDDVNEDIINRLHAVLR---- 997
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD-GSRNSLYGID 716
P+LLRR+K DV Q+P K H++ CS++ Q+ +Y F+ SS + L GS S+ I
Sbjct: 998 PFLLRRLKKDVEKQMPPKHTHIVPCSMSRRQKFLYEEFINSSSTQSTLSSGSFFSIINIL 1057
Query: 717 V-MRKICNHPDLLE 729
+ +RK+CNHPDL E
Sbjct: 1058 MQLRKVCNHPDLFE 1071
Score = 175 (66.7 bits), Expect = 1.6e-65, Sum P(6) = 1.6e-65
Identities = 41/137 (29%), Positives = 70/137 (51%)
Query: 393 KIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN-MYK 451
K+P + L +YQ +G+ WL L+ + GI+ DEMGLGKTI +S + L ++
Sbjct: 772 KVPFLLKFPLREYQHIGLDWLVSLYEKNLNGILADEMGLGKTIMTISLIAYLAVQKGVWG 831
Query: 452 PSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSD 511
P ++V P ++L W+ E ++W P + H +++D +K S+ + S+
Sbjct: 832 PHLIVVPSSVLFNWEMEFKRWCPGLKIFTYHGTSRDRKANRKGWSKSNAFHVCITSYSMV 891
Query: 512 YEGNLSSRNPKKWDLLI 528
+L R KKW +I
Sbjct: 892 MSDHLIFRR-KKWVYMI 907
Score = 51 (23.0 bits), Expect = 1.6e-65, Sum P(6) = 1.6e-65
Identities = 14/62 (22%), Positives = 30/62 (48%)
Query: 64 EKLYNKLRAVEFEIGAVASTVDHLRRVST-KEDNDIDDGDSTEQDGREDEKSAVQASPND 122
E+L +K E ++ + + L+++ K DND DD ++ E D + + + N
Sbjct: 681 EQLESKEYLEELKLESEMPLDELLKKLDQEKSDNDDDDNNNNEDDNNNNNNNNNNNNENS 740
Query: 123 MT 124
++
Sbjct: 741 IS 742
Score = 47 (21.6 bits), Expect = 1.6e-65, Sum P(6) = 1.6e-65
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 965 DKENNLEIGSSRRKGKEKVDNIGDEVDEE 993
+KEN +EI + KG EK + +E ++E
Sbjct: 1771 EKENEIEI--EKEKGNEKENEKENEKEKE 1797
Score = 47 (21.6 bits), Expect = 1.6e-65, Sum P(6) = 1.6e-65
Identities = 22/89 (24%), Positives = 35/89 (39%)
Query: 1013 DAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDI------SVPTWTGKSGTAG 1066
D I A EE+ R +E+ Q S + S +++ T +G SG++
Sbjct: 2122 DKIEKAKQEEERRAKEKRDQKIHSKKSNSSSSTLSNSNNNVINNSNSGNVTVSGYSGSST 2181
Query: 1067 APSSVRKKFGSTVGSQLIKPLEGSSSNKT 1095
SS+ S S K SSS+ +
Sbjct: 2182 PSSSLSSSTSSISTSNKDKKKSSSSSSSS 2210
Score = 46 (21.3 bits), Expect = 2.0e-65, Sum P(6) = 2.0e-65
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 965 DKENNLEIGSSRRKGKEKVDNIGDEVDEETNILKSL 1000
+KEN E + R K K+K D D+ D+E I+ +
Sbjct: 1789 EKENEKEKENERDKDKDK-DQDQDK-DQEMKIINEI 1822
Score = 45 (20.9 bits), Expect = 6.5e-31, Sum P(5) = 6.5e-31
Identities = 25/130 (19%), Positives = 47/130 (36%)
Query: 880 YHRQIYKHFLTNKILKNPQQRRFFKARNMKD-LFTLNDDGNGGSTETSNIFSQLSEDVNV 938
Y + + N + N + +N ++ L + + + TS I S+ ED N+
Sbjct: 1880 YGGSLTNQYDNNNLNNNNNNKNNMYIKNFQNKLISPDHNFRKNINSTSKIKSEFKED-NI 1938
Query: 939 VGXXXXXXXXXXXXXAASANADDAVGDKENNLEIGSSRRKGKEKVDNIGDEVDEETNILK 998
+ A + DD D+ + R G+ V G +V E
Sbjct: 1939 IVNDNDYNEEDGADDEADDDGDDEADDENEGNDFEGGGRGGR--VGE-GKKVMIEKKKPL 1995
Query: 999 SLFDANGIHS 1008
F+ +GI++
Sbjct: 1996 LFFELSGINN 2005
Score = 45 (20.9 bits), Expect = 1.0e-27, Sum P(4) = 1.0e-27
Identities = 7/42 (16%), Positives = 22/42 (52%)
Query: 717 VMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVW 758
+++++ H L++ ++ ++ D N ++ V ++ K W
Sbjct: 535 IVKEVIRHHLLIQTQEERELRDEENRKKKVASNVSKEIRKFW 576
Score = 44 (20.5 bits), Expect = 4.4e-51, Sum P(6) = 4.4e-51
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 491 RKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
+K + SD D+D +++ D N ++ N
Sbjct: 705 KKLDQEKSDNDDDDNNNNEDDNNNNNNNNN 734
Score = 43 (20.2 bits), Expect = 3.7e-65, Sum P(5) = 3.7e-65
Identities = 20/126 (15%), Positives = 54/126 (42%)
Query: 913 TLNDDGNGGSTETSNIFSQL-SEDVNVVGXXXXXXXXXXXXXAASANADDAVGDKENNL- 970
T N D S+ +S+ +L +D+ V G + + ++++ K+ +
Sbjct: 2195 TSNKDKKKSSSSSSSSKKRLVPDDIIVTGGVANSDKSDAELEDFAGSLEESLVSKQGGVP 2254
Query: 971 ----EIGSSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRL 1026
+SR+K + + + + + TN S + N I++ + + ++ ++ R
Sbjct: 2255 STTTNSSTSRKKSEYDLFDASSQDEGSTNESGSTTNNNNINNPTSTSSSSSSSGRKRDRK 2314
Query: 1027 EEQASQ 1032
+++ S+
Sbjct: 2315 KQRLSK 2320
Score = 43 (20.2 bits), Expect = 8.3e-31, Sum P(4) = 8.3e-31
Identities = 38/226 (16%), Positives = 79/226 (34%)
Query: 860 QKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGN 919
QKQ Y + T E++ + + K ++ +Q +A+ +D + N
Sbjct: 2090 QKQVAQQYVYSKQHTKEKEKERKLLMKMKKEKDKIEKAKQEEERRAKEKRDQKIHSKKSN 2149
Query: 920 GGSTETSNIFSQL---SEDVNV-VGXXXXXXXXXXXXXAASANADDAVGDKENNLEIGSS 975
S+ SN + + S NV V +++++ + DK+ + SS
Sbjct: 2150 SSSSTLSNSNNNVINNSNSGNVTVSGYSGSSTPSSSLSSSTSSISTSNKDKKKSSSSSSS 2209
Query: 976 RRKGKEKVDNI-------GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEE 1028
+K D I D+ D E + + + + + + E
Sbjct: 2210 SKKRLVPDDIIVTGGVANSDKSDAELEDFAGSLEESLVSKQGGVPSTTTNSSTSRKKSEY 2269
Query: 1029 QASQVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKK 1074
+ + + +S + ++I+ PT T S ++ RKK
Sbjct: 2270 DLFDASSQDEGSTNESGSTTNNNNINNPTSTSSSSSSSGRKRDRKK 2315
Score = 42 (19.8 bits), Expect = 7.5e-28, Sum P(5) = 7.5e-28
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 461 LLRQWKREAEKWYPSFHVELL 481
LLR+ K++ EK P H ++
Sbjct: 1000 LLRRLKKDVEKQMPPKHTHIV 1020
Score = 42 (19.8 bits), Expect = 8.5e-07, Sum P(3) = 8.5e-07
Identities = 13/63 (20%), Positives = 30/63 (47%)
Query: 627 VPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTE 686
VP V + + +PLQ+ST A+ ++ + R ++ N L + + +++
Sbjct: 2465 VPAQVSLHQSHAPLQISTPVT-AITASEMALMTTNRFIREKKNQMLQAQLQAQQRAQMSQ 2523
Query: 687 EQR 689
+Q+
Sbjct: 2524 QQQ 2526
Score = 41 (19.5 bits), Expect = 1.7e-64, Sum P(6) = 1.7e-64
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 138 KKTKAQLVKELSHFPKGITSKGIEH-DKFIQDLVKEEHRPKR 178
KK + + KE+ F I K +++ DK QD + + R K+
Sbjct: 562 KKVASNVSKEIRKFWNQI-KKLVQYKDKIHQDSINKIERDKQ 602
Score = 39 (18.8 bits), Expect = 1.0e-64, Sum P(6) = 1.0e-64
Identities = 28/118 (23%), Positives = 41/118 (34%)
Query: 1051 DDISVPTWTGKSGTAGAP-----SSVRKKFGSTVGSQLIKPLEGSSSNKTGEFNSFGAGA 1105
DDI V S + A S+ + S G S+S K E++ F A
Sbjct: 2217 DDIIVTGGVANSDKSDAELEDFAGSLEESLVSKQGGVPSTTTNSSTSRKKSEYDLFDAS- 2275
Query: 1106 SAGKVLSSSELLARIRGNQENAVGAGLERQFEVASSSANVARFADTRTSRSSKNASDV 1163
S E G+ N + +SSS++ R D + R SK+ V
Sbjct: 2276 ------SQDEGSTNESGSTTN--NNNINNPTSTSSSSSSSGRKRDRKKQRLSKSNGGV 2325
Score = 39 (18.8 bits), Expect = 4.1e-51, Sum P(5) = 4.1e-51
Identities = 29/136 (21%), Positives = 56/136 (41%)
Query: 410 VQWLWELHCQRAGGIIGD---EMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWK 466
VQ+ ++H I D E+ +GKT + S L A + + + P LL Q+
Sbjct: 583 VQYKDKIHQDSINKIERDKQLELIVGKT-EAYSNLLAENLRGHHHHHSTITPKDLLNQFD 641
Query: 467 REAEK------WYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
+ ++ + F+ +S+ DL + + D+DGE +Y L +
Sbjct: 642 HDVDEDGNEIEYNDDFNTS--DESSCDLSDDNI---NEEEDDDGEQLESKEYLEELKLES 696
Query: 521 PKKWDLLINRVLRSES 536
D L+ ++ + +S
Sbjct: 697 EMPLDELLKKLDQEKS 712
Score = 39 (18.8 bits), Expect = 1.4e-50, Sum P(6) = 1.4e-50
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 496 KSSDTDNDGEGSHDSDYEGNLSSRN 520
KS + D+D + D + N ++ N
Sbjct: 711 KSDNDDDDNNNNEDDNNNNNNNNNN 735
>UNIPROTKB|Q6ZRS2 [details] [associations]
symbol:SRCAP "Helicase SRCAP" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0043234
"protein complex" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=TAS] [GO:0004402 "histone
acetyltransferase activity" evidence=TAS] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0016573 "histone acetylation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0019048 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0006357 GO:GO:0006351 GO:GO:0003713
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC106886 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 GO:GO:0004402
EMBL:AC093249 EMBL:AK128030 EMBL:AB002307 EMBL:BC159099
EMBL:AF143946 IPI:IPI00009101 IPI:IPI00444046 IPI:IPI00550342
RefSeq:NP_006653.2 UniGene:Hs.647334 ProteinModelPortal:Q6ZRS2
SMR:Q6ZRS2 IntAct:Q6ZRS2 MINT:MINT-123408 STRING:Q6ZRS2
PhosphoSite:Q6ZRS2 DMDM:296452947 PaxDb:Q6ZRS2 PRIDE:Q6ZRS2
DNASU:10847 Ensembl:ENST00000262518 Ensembl:ENST00000344771
Ensembl:ENST00000380361 Ensembl:ENST00000395059 GeneID:10847
KEGG:hsa:10847 UCSC:uc002dze.1 UCSC:uc002dzg.1 CTD:10847
GeneCards:GC16P030710 H-InvDB:HIX0012970 HGNC:HGNC:16974
HPA:HPA028929 MIM:136140 MIM:611421 neXtProt:NX_Q6ZRS2
Orphanet:2044 PharmGKB:PA162404706 HOGENOM:HOG000168717
InParanoid:Q6ZRS2 KO:K11661 OMA:LGTGNPQ OrthoDB:EOG4B2SWB
ChiTaRS:SRCAP GenomeRNAi:10847 NextBio:41182 ArrayExpress:Q6ZRS2
Bgee:Q6ZRS2 CleanEx:HS_SRCAP Genevestigator:Q6ZRS2 Uniprot:Q6ZRS2
Length = 3230
Score = 382 (139.5 bits), Expect = 1.7e-65, Sum P(4) = 1.7e-65
Identities = 106/366 (28%), Positives = 185/366 (50%)
Query: 747 KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALID 806
K++ +A +L+ K +GHRVL+F Q +MLD+LE FL G+ Y R+DG T V+QR AL++
Sbjct: 2044 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2103
Query: 807 EYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866
+N +F FIL+T+ GG+G NLTGA+ V+ +D DWNP+ D QA++R RIGQ +DV +
Sbjct: 2104 RFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 2163
Query: 867 YRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFFKARNMKDLFTLN-DDGNGGSTE 924
YRLI+ T+EE + + K L + ++ +FK + +++LF + ++ + S
Sbjct: 2164 YRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDMPLEEPSSSSVP 2223
Query: 925 TSNIFSQ---LSEDVNVVGXXXXXXXXXXXXXAAS-ANADDAVGDKENNLEIGSSRRKGK 980
++ + S+ +++ AA+ A A+ E N G +G+
Sbjct: 2224 SAPEEEEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNENDGFPAGEGE 2283
Query: 981 EKVDNIGDEVDE----ETNILKSLFDANGIHS-AMNH-DAIMNAHDEEKMRLEEQASQVA 1034
E G E +E E I + I AM +A + E+++ E+ + A
Sbjct: 2284 E-AGRPGAEDEEMSRAEQEIAALVEQLTPIERYAMKFLEASLEEVSREELKQAEEQVEAA 2342
Query: 1035 QRAAEALRQSRMLRSRDDISVPTWTGKS--GTAGAPS--SVRKKFGSTVGSQLIKPLEGS 1090
++ + ++ +++ P +S GT G S + K G+++ + L G+
Sbjct: 2343 RKDLDQAKEEVFRLPQEEEEGPGAGDESSCGTGGGTHRRSKKAKAPERPGTRVSERLRGA 2402
Query: 1091 SSNKTG 1096
+ G
Sbjct: 2403 RAETQG 2408
Score = 273 (101.2 bits), Expect = 1.7e-65, Sum P(4) = 1.7e-65
Identities = 66/192 (34%), Positives = 101/192 (52%)
Query: 540 ITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNK 599
IT+Y+ + + W Y +LDE I+N ++ + R+++TG P+QN
Sbjct: 722 ITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNS 781
Query: 600 LSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPY 659
L ELWSL F+ P F+ F+ P+T G + R VLR P+
Sbjct: 782 LMELWSLMHFLMPHVFQSHREFKEWFSNPLT-GMIEGSQEYNEGLVKRLHKVLR----PF 836
Query: 660 LLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL-DGSRNSLYGIDV- 717
LLRR+K DV Q+PKK EHV+ C L++ QR +Y F+A + ++ L G S+ I +
Sbjct: 837 LLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGHFMSVINILMQ 896
Query: 718 MRKICNHPDLLE 729
+RK+CNHP+L +
Sbjct: 897 LRKVCNHPNLFD 908
Score = 172 (65.6 bits), Expect = 1.7e-65, Sum P(4) = 1.7e-65
Identities = 34/94 (36%), Positives = 56/94 (59%)
Query: 394 IPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN-MYKP 452
IP + L +YQ +G+ WL ++ ++ GI+ DEMGLGKTIQ +S L L + P
Sbjct: 610 IPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGP 669
Query: 453 SIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQ 486
+++ P +++ W+ E ++W PSF + L + AQ
Sbjct: 670 HLIIVPTSVMLNWEMELKRWCPSFKI-LTYYGAQ 702
Score = 56 (24.8 bits), Expect = 1.7e-65, Sum P(4) = 1.7e-65
Identities = 30/152 (19%), Positives = 63/152 (41%)
Query: 50 HDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGR 109
HD P ++E+ L EI S V + D D ++ + E++
Sbjct: 357 HDSDTRDGPEEGAEEEPPQVL-----EIKPPPSAVTQRNKQPWHPDEDDEEFTANEEEA- 410
Query: 110 EDEKSAVQASPN-DMTLQHALTADRL-KSLKKTKAQLVKELS--HFPKGITSKGIEHDKF 165
EDE+ + A + + HA+ L + + + +L+++ + + P +S+ + D+
Sbjct: 411 EDEEDTIAAEEQLEGEVDHAMELSELAREGELSMEELLQQYAGAYAPGSGSSEDEDEDEV 470
Query: 166 IQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTV 197
D + P+ + + P +D S Q +V
Sbjct: 471 --DANSSDCEPEGPVEAEEPPQEDSSSQSDSV 500
Score = 47 (21.6 bits), Expect = 2.3e-30, Sum P(4) = 2.3e-30
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 1039 EALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGSTVGSQLIKPLEGSSSN 1093
E +R+ R R VP + S + G+PS VR G + P E + S+
Sbjct: 2762 ELVRRRRQQRGAASTLVPGVSETSASPGSPS-VRSMSGPESSPPIGGPCEAAPSS 2815
Score = 44 (20.5 bits), Expect = 3.5e-63, Sum P(5) = 3.5e-63
Identities = 25/108 (23%), Positives = 38/108 (35%)
Query: 94 EDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHA----LTADRLKSLKKTKAQLVKELS 149
ED D + E+D E + Q ND Q L + L++ L +L
Sbjct: 285 EDGDFQPQEDEEEDDEETIEVEEQQEGNDAEAQRREIELLRREGELPLEELLRSLPPQLL 344
Query: 150 HFPKGITSKGIEHDKFIQDLVKE--EHRPKRKSKEAQKPGK--DRSKQ 193
P + HD +D +E E P + + P R+KQ
Sbjct: 345 EGPSSPSQTPSSHDSDTRDGPEEGAEEEPPQVLEIKPPPSAVTQRNKQ 392
Score = 43 (20.2 bits), Expect = 5.9e-30, Sum P(4) = 5.9e-30
Identities = 21/99 (21%), Positives = 33/99 (33%)
Query: 973 GSSRRKGKEKV-DNIGDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQAS 1031
G+ RR K K + G V E L A NH +++AH + S
Sbjct: 2377 GTHRRSKKAKAPERPGTRVSER------LRGARAETQGANHTPVISAHQTRSTTTPPRCS 2430
Query: 1032 QVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSS 1070
+R + R + ++P +A P S
Sbjct: 2431 PARERVPRPAPRPRPTPASAPAAIPALVPVPVSAPVPIS 2469
Score = 41 (19.5 bits), Expect = 2.1e-41, Sum P(4) = 2.1e-41
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFP 612
R+P + HR ++ ++LSE+ F FV P
Sbjct: 1939 RSPGPSHPTFWTYTEAAHRAVLFPQQRLDQLSEIIERFIFVMP 1981
Score = 40 (19.1 bits), Expect = 3.5e-63, Sum P(5) = 3.5e-63
Identities = 12/42 (28%), Positives = 20/42 (47%)
Query: 223 ELVRKGILTPFHKLKGFERCIQQPGPSNKQNVPDEQEARSND 264
EL R+G L+ L+ + S++ DE +A S+D
Sbjct: 435 ELAREGELSMEELLQQYAGAYAPGSGSSEDEDEDEVDANSSD 476
Score = 40 (19.1 bits), Expect = 2.4e-51, Sum P(3) = 2.4e-51
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 61 TSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDN 96
T EK N + A E +G T+ L ++ ++ N
Sbjct: 631 TMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGN 666
Score = 39 (18.8 bits), Expect = 1.0e-63, Sum P(4) = 1.0e-63
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 91 STKEDNDIDDGDSTEQD--GREDEKSAVQAS 119
S+ + + ++D E+D E+E S AS
Sbjct: 493 SSSQSDSVEDRSEDEEDEHSEEEETSGSSAS 523
Score = 38 (18.4 bits), Expect = 1.2e-27, Sum P(4) = 1.2e-27
Identities = 17/56 (30%), Positives = 22/56 (39%)
Query: 243 IQQPGPSNKQNVPDEQEARSNDPFSASVDRALRMMSEAAQARPSTKLLDPESLPKL 298
+ P PS P + + P S S +AL A A P T +L P P L
Sbjct: 1555 LASPFPSAPNPAPAQASLLA--PAS-SASQALATPL-APMAAPQTAILAPSPAPPL 1606
Score = 37 (18.1 bits), Expect = 3.3e-50, Sum P(4) = 3.3e-50
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWD 525
ELL A ++ D D S D + EG + + P + D
Sbjct: 446 ELLQQYAGAYAPGSGSSEDEDEDEVDANSSDCEPEGPVEAEEPPQED 492
>POMBASE|SPAC15A10.03c [details] [associations]
symbol:rad54 "DNA-dependent ATPase Rad54/Rhp54"
species:4896 "Schizosaccharomyces pombe" [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISM] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005819 "spindle"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IMP] [GO:0006311
"meiotic gene conversion" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0015616 "DNA translocase activity"
evidence=ISO] [GO:0030491 "heteroduplex formation" evidence=ISO]
[GO:0033170 "protein-DNA loading ATPase activity" evidence=TAS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC15A10.03c GO:GO:0005524 GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0005819 GO:GO:0006338
GO:GO:0000724 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007131 GO:GO:0006311
GO:GO:0015616 HOGENOM:HOG000204521 GO:GO:0033170 GO:GO:0030491
KO:K10875 EMBL:Z29640 PIR:S41886 RefSeq:NP_594290.1
ProteinModelPortal:P41410 IntAct:P41410 STRING:P41410
EnsemblFungi:SPAC15A10.03c.1 GeneID:2542749 KEGG:spo:SPAC15A10.03c
OMA:LSEYFAL OrthoDB:EOG4T1MVP NextBio:20803794 Uniprot:P41410
Length = 852
Score = 378 (138.1 bits), Expect = 2.2e-65, Sum P(4) = 2.2e-65
Identities = 75/175 (42%), Positives = 110/175 (62%)
Query: 745 SEKMKVVAQVL-KVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMA 803
S KM V+ ++L ++ ++ +++L + LD+ E A GY+ R+DG V +R
Sbjct: 609 SGKMLVLERMLYQIKQETDDKIVLISNYTSTLDLFEQLCRARGYKALRLDGTMNVNKRQR 668
Query: 804 LIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQ 862
L+D +N+ D F+F+L++K GG G NL GANR+I+FDPDWNP+ D QA R WR GQK+
Sbjct: 669 LVDTFNDPEKDAFVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKK 728
Query: 863 DVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLND 916
D VYR I GTIEEK++ RQ +K L++ ++ Q R F N++ LF LND
Sbjct: 729 DCFVYRFIATGTIEEKIFQRQSHKQSLSSCVVDEAQDVERHFSLDNLRQLFQLND 783
Score = 327 (120.2 bits), Expect = 2.2e-65, Sum P(4) = 2.2e-65
Identities = 71/192 (36%), Positives = 110/192 (57%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
+LI +YE LR E L + E G + DEGHR++N ++ +L R+I++G PIQ
Sbjct: 384 VLIASYETLRSYVEHLNNAEIGMLLCDEGHRLKNSDSLTFTALDKLNVQRRVILSGTPIQ 443
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N LSE +SL +F PG LG F + +PI G A+ + L ++
Sbjct: 444 NDLSEYFSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGTEKDKENGDAKLAELAKIVN 503
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNS-LYGID 716
+++RR ++ LP K EHV+FC+L+E Q ++Y+ F+ S E+ +IL G+ + L I
Sbjct: 504 RFIIRRTNDILSKYLPVKYEHVVFCNLSEFQLSLYKHFITSPEINKILRGTGSQPLKAIG 563
Query: 717 VMRKICNHPDLL 728
+++KICNHPDLL
Sbjct: 564 LLKKICNHPDLL 575
Score = 104 (41.7 bits), Expect = 2.2e-65, Sum P(4) = 2.2e-65
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 405 YQKVGVQWLWELHCQR----AGG-IIGDEMGLGKTIQVLSFLGAL--HFSNMYKPSI--- 454
+Q GV++L++ R A G I+ DEMGLGKT+Q ++ L L KP+I
Sbjct: 267 HQIEGVKFLYKCVTGRIDRCANGCIMADEMGLGKTLQCIALLWTLLKQSPQAGKPTIEKA 326
Query: 455 -VVCPVTLLRQWKREAEKW 472
+ CP +L++ W E KW
Sbjct: 327 IITCPSSLVKNWANELVKW 345
Score = 46 (21.3 bits), Expect = 7.3e-60, Sum P(3) = 7.3e-60
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 468 EAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDS 510
+A++ P L +D + ++ K +D++ E HDS
Sbjct: 163 DADEIIPDIKEVLAEKRKKDELLKNRKGKKEISDSEPESDHDS 205
Score = 39 (18.8 bits), Expect = 2.2e-65, Sum P(4) = 2.2e-65
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 249 SNKQNVPDEQEARSNDPF-SASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRP 304
S+ + D S D S S +++L + + RP+ L D + K P P
Sbjct: 195 SDSEPESDHDSCVSTDTVASCSTEQSLITSNTSKHRRPNKSLKDLLGIQKEKPPPPP 251
>UNIPROTKB|F1P3Q4 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0007420 "brain development" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0016589 "NURF
complex" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IEA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0003677 GO:GO:0006351 Gene3D:1.10.10.60 SUPFAM:SSF46689
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0008094 GeneTree:ENSGT00680000100002
SUPFAM:SSF101224 OMA:PMSQKRK EMBL:AADN02013587 EMBL:AADN02013588
IPI:IPI00594974 Ensembl:ENSGALT00000013737 Uniprot:F1P3Q4
Length = 982
Score = 578 (208.5 bits), Expect = 3.0e-65, Sum P(3) = 3.0e-65
Identities = 144/392 (36%), Positives = 224/392 (57%)
Query: 531 VLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHR 588
++ E + +T+YE + + EK + W Y V+DE HRI+N +++S + ++ +T +R
Sbjct: 202 MMPGEWDVCVTSYEMV--IKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNR 259
Query: 589 IIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRC 648
+++TG P+QN L ELW+L +F+ P F++ F +G R
Sbjct: 260 LLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQ--------KLVERL 311
Query: 649 AVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD-- 706
VL+ P+LLRR+KA+V LP K E ++ L++ QR Y L +++ IL+
Sbjct: 312 HAVLK----PFLLRRIKAEVEKSLPPKKEVKIYLGLSKMQREWYTRILMK-DID-ILNSA 365
Query: 707 GSRNSLYGIDVM---RKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVWK 759
G + + ++++ RK CNHP L + + P Y S KM V+ ++L +
Sbjct: 366 GKMDKMRLLNILMQLRKCCNHPYLFDGAEPG--PPYTTDTHLITNSGKMLVLDKLLAKLR 423
Query: 760 DQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYN--NSSDVFIF 817
+QG RVLLF+Q ++LDILE + + GYEY R+DG TP ++R ID +N NSS FIF
Sbjct: 424 EQGSRVLLFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIDTFNAPNSSK-FIF 482
Query: 818 ILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEE 877
+L+T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQK+ V V+RLIT T+EE
Sbjct: 483 MLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEE 542
Query: 878 KVYHRQIYKHFLTNKILKNPQQRRFFKARNMK 909
++ R K L + ++ QQ R ++ K
Sbjct: 543 RIVERAEIKLRLDSIVI---QQGRLIDQQSNK 571
Score = 168 (64.2 bits), Expect = 3.0e-65, Sum P(3) = 3.0e-65
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ W+ L+ GI+ DEMGLGKT+Q ++ LG L H+ N+ P +V+ P +
Sbjct: 107 LRDYQVRGLNWMISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 166
Query: 461 LLRQWKREAEKWYPSFHVELL 481
L W E ++W PS L
Sbjct: 167 TLHNWMNEFKRWVPSLRAVCL 187
Score = 46 (21.3 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QR ++ MKD+ LN G NI QL + N
Sbjct: 347 QREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCN 385
Score = 43 (20.2 bits), Expect = 3.0e-65, Sum P(3) = 3.0e-65
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVD 991
++ N I ++ + G++ +DNI EV+
Sbjct: 775 RDFNQFIKANEKYGRDDIDNIAREVE 800
>TAIR|locus:2182978 [details] [associations]
symbol:CHR17 "chromatin remodeling factor17" species:3702
"Arabidopsis thaliana" [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] [GO:0000226 "microtubule
cytoskeleton organization" evidence=RCA] [GO:0000911 "cytokinesis
by cell plate formation" evidence=RCA] [GO:0006259 "DNA metabolic
process" evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=RCA]
[GO:0007126 "meiosis" evidence=RCA] [GO:0008283 "cell
proliferation" evidence=RCA] [GO:0010413 "glucuronoxylan metabolic
process" evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016572 "histone phosphorylation" evidence=RCA] [GO:0031047
"gene silencing by RNA" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045492 "xylan
biosynthetic process" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=IGI] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 EMBL:CP002688 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 GO:GO:0010228 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 KO:K11654 OMA:MQRKWYK SUPFAM:SSF101224
IPI:IPI00547773 RefSeq:NP_850847.1 UniGene:At.19176
ProteinModelPortal:F4JY25 SMR:F4JY25 IntAct:F4JY25 PRIDE:F4JY25
EnsemblPlants:AT5G18620.2 GeneID:831980 KEGG:ath:AT5G18620
PhylomeDB:F4JY25 Uniprot:F4JY25
Length = 1072
Score = 569 (205.4 bits), Expect = 3.4e-65, Sum P(3) = 3.4e-65
Identities = 144/405 (35%), Positives = 223/405 (55%)
Query: 514 GNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPN 573
GN R + +LL+ + + +T++E L W Y ++DE HRI+N N
Sbjct: 276 GNPEERRHIREELLV----AGKFDICVTSFEMAIKEKTTLRRFSWRYIIIDEAHRIKNEN 331
Query: 574 AEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGG 633
+ +S + T +R+++TG P+QN L ELW+L +F+ P F+ F + G
Sbjct: 332 SLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWFQI----SG 387
Query: 634 YANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYR 693
N V ++ VLR P+LLRR+K+DV LP K E +L +++ Q+ Y+
Sbjct: 388 -ENDQQEVVQQLHK---VLR----PFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYK 439
Query: 694 AFLASSEVEQILDGS-RNSLYGIDV-MRKICNHPDLLEREQSCQIPDYGNPER----SEK 747
A L ++E + G R L I + +RK CNHP L + + P Y + + K
Sbjct: 440 ALL-QKDLEVVNGGGERKRLLNIAMQLRKCCNHPYLFQGAEPG--PPYTTGDHLVTNAGK 496
Query: 748 MKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDE 807
M ++ ++L KD+ RVL+F+Q ++LDILE +L+ GY+Y R+DG T +R A I+
Sbjct: 497 MVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEA 556
Query: 808 YNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866
YN S+ F+F+L+T+ GGLG NL A+ VI++D DWNP D+QA++RA RIGQK++V V
Sbjct: 557 YNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQV 616
Query: 867 YRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNM-KD 910
+R T IE KV R YK + ++ QQ R + + + KD
Sbjct: 617 FRFCTENAIEAKVIERA-YKKLALDALVI--QQGRLAEQKTVNKD 658
Score = 158 (60.7 bits), Expect = 3.4e-65, Sum P(3) = 3.4e-65
Identities = 35/89 (39%), Positives = 48/89 (53%)
Query: 390 GGLKI---PESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH- 445
GG ++ P I L DYQ G+ WL L+ GI+ DEMGLGKT+Q +S L LH
Sbjct: 179 GGTRLLTQPACIQGKLRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHE 238
Query: 446 FSNMYKPSIVVCPVTLLRQWKREAEKWYP 474
+ + P +VV P + L W E ++ P
Sbjct: 239 YRGINGPHMVVAPKSTLGNWMNEIRRFCP 267
Score = 67 (28.6 bits), Expect = 3.4e-65, Sum P(3) = 3.4e-65
Identities = 30/147 (20%), Positives = 61/147 (41%)
Query: 59 SSTSQEKLYNKLRAVEF--EIGAVASTVDHLRRVSTKEDNDIDDGD--STEQDGREDEKS 114
SS +E++ ++ E E+ AVA + ++ + D + E D EDE+
Sbjct: 16 SSEEEEQVNDQANVEEDDDELEAVARSAGSDEEDVAPDEAPVSDDEVVPVEDDAEEDEED 75
Query: 115 AVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSH--FPKGITSKGIEHDKFI-QDLVK 171
+A +++ + ++ +KK K Q + + + + +KG K++ Q
Sbjct: 76 EEKA---EISKREKARLKEMQKMKKQKIQQILDSQNASIDADMNNKGKGRIKYLLQQTEL 132
Query: 172 EEHRPKRKSKEAQKPGKDRSKQQKTVS 198
H K +QK GK R + ++
Sbjct: 133 FAHFAKSDPSPSQKKGKGRGRHSSKLT 159
Score = 52 (23.4 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 892 KILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
K+ + Q++++KA KDL +N G G NI QL + N
Sbjct: 427 KVGMSQMQKQYYKALLQKDLEVVN--GGGERKRLLNIAMQLRKCCN 470
>MGI|MGI:1935129 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IDA] [GO:0000793 "condensed chromosome" evidence=ISO]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISO] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005677 "chromatin silencing complex" evidence=IDA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006302 "double-strand
break repair" evidence=IMP] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA] [GO:0006334 "nucleosome assembly"
evidence=ISO] [GO:0006338 "chromatin remodeling"
evidence=ISO;IGI;IDA] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=ISO] [GO:0009790 "embryo development"
evidence=IMP] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=ISO] [GO:0016589
"NURF complex" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] [GO:0016818 "hydrolase activity, acting
on acid anhydrides, in phosphorus-containing anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0031213 "RSF complex" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;TAS] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00717
MGI:MGI:1935129 GO:GO:0005524 GO:GO:0045893 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0006338 GO:GO:0009790 GO:GO:0043596
GO:GO:0006333 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183
GO:GO:0006302 GO:GO:0004386 GO:GO:0000793 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213
HOVERGEN:HBG056329 OrthoDB:EOG44J2H9 CTD:8467 EMBL:AF375046
EMBL:AF325921 EMBL:BC021922 EMBL:BC053069 EMBL:AK039811
EMBL:AK052320 IPI:IPI00396739 RefSeq:NP_444354.2 UniGene:Mm.246803
ProteinModelPortal:Q91ZW3 SMR:Q91ZW3 DIP:DIP-36073N IntAct:Q91ZW3
MINT:MINT-1867515 STRING:Q91ZW3 PhosphoSite:Q91ZW3 PaxDb:Q91ZW3
PRIDE:Q91ZW3 Ensembl:ENSMUST00000043359 GeneID:93762 KEGG:mmu:93762
UCSC:uc009mja.1 InParanoid:Q91ZW3 NextBio:351651 Bgee:Q91ZW3
Genevestigator:Q91ZW3 GermOnline:ENSMUSG00000031715 Uniprot:Q91ZW3
Length = 1051
Score = 571 (206.1 bits), Expect = 3.5e-65, Sum P(4) = 3.5e-65
Identities = 138/375 (36%), Positives = 214/375 (57%)
Query: 531 VLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHR 588
+L E + +T+YE L + EK + W Y V+DE HRI+N +++S + ++ +T +R
Sbjct: 274 LLPGEWDVCVTSYEML--IKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNR 331
Query: 589 IIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRC 648
+++TG P+QN L ELWSL +F+ P F++ F +G R
Sbjct: 332 LLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQ--------KLVERL 383
Query: 649 AVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD-- 706
+VLR P+LLRR+KADV LP K E ++ L++ QR Y L +++ IL+
Sbjct: 384 HMVLR----PFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMK-DID-ILNSA 437
Query: 707 GSRNSLYGIDVM---RKICNHPDLLEREQSCQ--IPDYGNPERSEKMKVVAQVLKVWKDQ 761
G + + ++++ RK CNHP L + + D S KM V+ ++L K+Q
Sbjct: 438 GKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQ 497
Query: 762 GHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILT 820
G RVL+F+Q ++LDILE + + YEY R+DG TP +R I+ YN +S F+F+L+
Sbjct: 498 GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLS 557
Query: 821 TKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVY 880
T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQ + V V+R IT T+EE++
Sbjct: 558 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIV 617
Query: 881 HRQIYKHFLTNKILK 895
R K L + +++
Sbjct: 618 ERAEMKLRLDSIVIQ 632
Score = 177 (67.4 bits), Expect = 3.5e-65, Sum P(4) = 3.5e-65
Identities = 38/94 (40%), Positives = 53/94 (56%)
Query: 399 FNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVC 457
+ L DYQ G+ WL L+ GI+ DEMGLGKT+Q +S LG + H+ N+ P +V+
Sbjct: 176 WGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLV 235
Query: 458 PVTLLRQWKREAEKWYPSFH-VELLHDSAQDLGF 490
P + L W E +KW P+ V L+ D Q F
Sbjct: 236 PKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAF 269
Score = 46 (21.3 bits), Expect = 4.2e-08, Sum P(4) = 4.2e-08
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QR ++ MKD+ LN G NI QL + N
Sbjct: 419 QREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCN 457
Score = 44 (20.5 bits), Expect = 3.5e-65, Sum P(4) = 3.5e-65
Identities = 17/90 (18%), Positives = 38/90 (42%)
Query: 234 HKLKGFERCIQQPGPSNKQNVPDEQEARSNDPFSASVDRALRMMSEAAQARPSTKLLDPE 293
H G ++ IQ+P P+ ++ + ++ R + + + AAQ P++ L
Sbjct: 63 HGSPGKQKEIQEPDPTYEEKMQTDRANRF-EYLLKQTELFAHFIQPAAQKTPTSPLKMKP 121
Query: 294 SLPKLDGPTRPFQRLKTPFRMPQSEESEVE 323
P++ + +R ++E+ E E
Sbjct: 122 GRPRVKKDEKQNLLSVGDYRHRRTEQEEDE 151
Score = 42 (19.8 bits), Expect = 3.5e-65, Sum P(4) = 3.5e-65
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVDEET 994
++ N I ++ + G++ ++NI EV+ +T
Sbjct: 847 RDFNQFIKANEKWGRDDIENIAREVEGKT 875
>SGD|S000001388 [details] [associations]
symbol:STH1 "ATPase component of the RSC chromatin remodeling
complex" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0007126 "meiosis" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0006337 "nucleosome
disassembly" evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IMP] [GO:0007010 "cytoskeleton organization"
evidence=IGI;IMP] [GO:0031055 "chromatin remodeling at centromere"
evidence=IMP] [GO:0007059 "chromosome segregation" evidence=IGI]
[GO:0016586 "RSC complex" evidence=IDA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000086 "G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0006302 "double-strand break repair"
evidence=IMP] [GO:0015616 "DNA translocase activity" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SGD:S000001388 GO:GO:0005524 GO:GO:0007126 GO:GO:0000086
GO:GO:0007010 GO:GO:0007059 GO:GO:0000775 GO:GO:0006355
EMBL:BK006942 GO:GO:0006302 GO:GO:0004386 GO:GO:0006368
GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0043044 GO:GO:0016584
EMBL:DQ115392 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
GO:GO:0070577 InterPro:IPR018359 EMBL:Z46833 InterPro:IPR014012
PROSITE:PS51204 GeneTree:ENSGT00670000098110 HOGENOM:HOG000172362
GO:GO:0015616 GO:GO:0031055 KO:K11786 OrthoDB:EOG4D565R EMBL:D10595
EMBL:M83755 PIR:S49883 RefSeq:NP_012140.1 ProteinModelPortal:P32597
SMR:P32597 DIP:DIP-5889N IntAct:P32597 MINT:MINT-615490
STRING:P32597 PaxDb:P32597 PeptideAtlas:P32597 EnsemblFungi:YIL126W
GeneID:854680 KEGG:sce:YIL126W CYGD:YIL126w OMA:MEDFLRM
NextBio:977286 Genevestigator:P32597 GermOnline:YIL126W
Uniprot:P32597
Length = 1359
Score = 606 (218.4 bits), Expect = 4.8e-65, Sum P(3) = 4.8e-65
Identities = 135/374 (36%), Positives = 219/374 (58%)
Query: 538 LLITTYEQLRLLGEKLLDV-EWGYAVLDEGHRIRNPNAEISL-VCKQLQTVHRIIMTGAP 595
+L+TTYE + + + LL +W + ++DEGHR++N +++S + +T +R+I+TG P
Sbjct: 571 VLLTTYEYI-IKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTISHYYRTRNRLILTGTP 629
Query: 596 IQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVV--LR 653
+QN L ELW+L +FV P FE F P G L+++ ++ L
Sbjct: 630 LQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTG--TQEKLELTEEETLLIIRRLH 687
Query: 654 DLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSE--VEQILDGS-RN 710
++ P+LLRR+K +V LP K E V+ C L+ Q+ +Y+ L + V +G+ +
Sbjct: 688 KVLRPFLLRRLKKEVEKDLPDKVEKVIKCKLSGLQQQLYQQMLKHNALFVGAGTEGATKG 747
Query: 711 SLYGID--VM--RKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVWKDQG 762
+ G++ +M RKICNHP + + + P GN + + K +++ +VL +K G
Sbjct: 748 GIKGLNNKIMQLRKICNHPFVFDEVEGVVNPSRGNSDLLFRVAGKFELLDRVLPKFKASG 807
Query: 763 HRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTT 821
HRVL+F Q Q++DI+E FL +Y R+DG T ++R +++ +N SD F F+L+T
Sbjct: 808 HRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAFNAPDSDYFCFLLST 867
Query: 822 KVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYH 881
+ GGLG NL A+ VIIFD DWNP D+QA++RA RIGQK +V + RLIT ++EE +
Sbjct: 868 RAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITTDSVEEVILE 927
Query: 882 RQIYKHFLTNKILK 895
R + K + K+++
Sbjct: 928 RAMQKLDIDGKVIQ 941
Score = 150 (57.9 bits), Expect = 4.8e-65, Sum P(3) = 4.8e-65
Identities = 30/77 (38%), Positives = 45/77 (58%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH-FSNMYKPSIVVCPVT 460
L +YQ G++W+ L+ GI+ DEMGLGKTIQ +S + L+ P +V+ P++
Sbjct: 470 LKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSISLITYLYEVKKDIGPFLVIVPLS 529
Query: 461 LLRQWKREAEKWYPSFH 477
+ W E EKW PS +
Sbjct: 530 TITNWTLEFEKWAPSLN 546
Score = 42 (19.8 bits), Expect = 4.8e-65, Sum P(3) = 4.8e-65
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 965 DKENNLEIGSSRRKGKEKVD 984
DKEN E +S+ G KV+
Sbjct: 1162 DKENTQEESTSQENGGAKVE 1181
>UNIPROTKB|Q9DG67 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 CTD:25788
KO:K10877 EMBL:AF178529 IPI:IPI00590839 RefSeq:NP_990041.1
UniGene:Gga.2372 ProteinModelPortal:Q9DG67 STRING:Q9DG67
PRIDE:Q9DG67 GeneID:395449 KEGG:gga:395449 HOGENOM:HOG000204521
HOVERGEN:HBG058654 InParanoid:Q9DG67 OrthoDB:EOG4SBDX5
NextBio:20815533 Uniprot:Q9DG67
Length = 918
Score = 377 (137.8 bits), Expect = 7.4e-65, Sum P(3) = 7.4e-65
Identities = 75/180 (41%), Positives = 114/180 (63%)
Query: 745 SEKMKVVAQVLKVWKD--QGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRM 802
S K++V+ ++L ++ RV+L + Q L++L GY Y R+DG TPV QR
Sbjct: 648 SGKLQVLVKLLAAIRELSSSERVVLVSNYTQTLNVLLETCKCYGYSYTRLDGNTPVSQRQ 707
Query: 803 ALIDEYNNS-SDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQK 861
++D +N+ S FIF+L++K GG+G NL GA+ +I++D DWNP+TD+QA R WR GQK
Sbjct: 708 QIVDSFNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDGQK 767
Query: 862 QDVTVYRLITRGTIEEKVYHRQIYKHFLTNKI--LKNPQQRRFFKARNMKDLFTLNDDGN 919
V +YRL+T GTIEEK+Y RQI K L+ + L + F +++LFTL+++ +
Sbjct: 768 CTVHIYRLLTTGTIEEKIYQRQISKQDLSGAVVDLSKTSEHIHFSVEELRNLFTLHENSS 827
Score = 284 (105.0 bits), Expect = 7.4e-65, Sum P(3) = 7.4e-65
Identities = 68/205 (33%), Positives = 108/205 (52%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
++I +YE L +++ +E+ + DEGHR++N + + + L RII+TG PIQ
Sbjct: 412 VMIISYEMLLRSLDQIQAIEFNLLICDEGHRLKNSSIKTTTALTNLSCERRIILTGTPIQ 471
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N L E ++L +FV PG LG L + + PI +A+ + + A L L
Sbjct: 472 NDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLGEKRAAELTRLTG 531
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGS-RNS--LYG 714
++LRR + +N LP K E+++FC T Q +YR L+S + L G NS L
Sbjct: 532 LFILRRTQEVINKFLPPKKENIIFCQPTALQLELYRKLLSSRVISSCLQGRLENSPHLIC 591
Query: 715 IDVMRKICNHPDLLER--EQSCQIP 737
I ++K+CNHP LL + ++ C P
Sbjct: 592 IGALKKLCNHPCLLFKALKEKCCDP 616
Score = 140 (54.3 bits), Expect = 7.4e-65, Sum P(3) = 7.4e-65
Identities = 34/94 (36%), Positives = 56/94 (59%)
Query: 398 IFNNLFDYQKVGVQWLWE----LHCQ-RAGGIIGDEMGLGKTIQVLSFLGALHFSNMY-- 450
I NNL +Q+ G+ +L+E + R G I+ DEMGLGKT+Q +S + L +Y
Sbjct: 299 IANNLRPHQREGIVFLYECVMGMRVSGRFGAILADEMGLGKTLQCISLVWTLLRQGVYGC 358
Query: 451 KP----SIVVCPVTLLRQWKREAEKWYPSFHVEL 480
KP +++V P +L++ WK+E +KW S +++
Sbjct: 359 KPVLKRALIVTPGSLVKNWKKEFQKWLGSERIKV 392
Score = 40 (19.1 bits), Expect = 1.2e-29, Sum P(2) = 1.2e-29
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 55 SIDPSSTSQEKLYNKLRAVE 74
S +PS+T +EK + RA E
Sbjct: 506 SREPSATKEEKDLGEKRAAE 525
>CGD|CAL0003962 [details] [associations]
symbol:orf19.239 species:5476 "Candida albicans" [GO:0016586
"RSC complex" evidence=IEA] [GO:0007059 "chromosome segregation"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0031055 "chromatin remodeling at
centromere" evidence=IEA] [GO:0006337 "nucleosome disassembly"
evidence=IEA] [GO:0016584 "nucleosome positioning" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA] [GO:0007010
"cytoskeleton organization" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0000086
"G2/M transition of mitotic cell cycle" evidence=IEA] [GO:0015616
"DNA translocase activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0070577 "histone acetyl-lysine binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0003962 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
EMBL:AACQ01000027 EMBL:AACQ01000026 InterPro:IPR014012
PROSITE:PS51204 KO:K11786 RefSeq:XP_719938.1 RefSeq:XP_720068.1
ProteinModelPortal:Q5AEM9 STRING:Q5AEM9 GeneID:3638290
GeneID:3638351 KEGG:cal:CaO19.239 KEGG:cal:CaO19.7869
Uniprot:Q5AEM9
Length = 1303
Score = 595 (214.5 bits), Expect = 7.5e-65, Sum P(4) = 7.5e-65
Identities = 142/404 (35%), Positives = 220/404 (54%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQL-QTVHRIIMTGAPI 596
+L+TTYE + L + + ++DEGHR++N +++S + +T +R+I+TG P+
Sbjct: 601 VLLTTYEYVIRERPMLAKFHYSHMIIDEGHRMKNAQSKLSQTLRTYYKTKNRLILTGTPL 660
Query: 597 QNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLI 656
QN L ELW+L +FV PG + F+ F P G L + L ++
Sbjct: 661 QNNLPELWALLNFVLPGIFNSVKSFDDWFNTPFANTGAQEKIELTEEESLLVIRRLHKVL 720
Query: 657 MPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSE--VEQILDGSRNSLYG 714
P+LLRR+K DV LP K E VL C+L+ Q +Y+ L + V + G+++ + G
Sbjct: 721 RPFLLRRLKKDVEKDLPDKVEKVLKCNLSGLQYVLYQQMLKHNALFVGADVGGAKSGIKG 780
Query: 715 ID--VM--RKICNHPDLLEREQSC-QIPDYGNP---ERSEKMKVVAQVLKVWKDQGHRVL 766
++ +M RKICNHP + E +S N S K +++ +VL +K GHRVL
Sbjct: 781 LNNKIMQLRKICNHPFVFEEVESVLNSSRLTNDLIWRVSGKFELLDRVLPKFKKSGHRVL 840
Query: 767 LFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGG 825
+F Q Q++DI+E FL +Y R+DG T ++R ++ +N SD F F+L+T+ GG
Sbjct: 841 MFFQMTQIMDIMEDFLRWKDMKYLRLDGSTKAEERQDMLKVFNAPDSDYFCFLLSTRAGG 900
Query: 826 LGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIY 885
LG NL A+ VIIFD DWNP D+QA++RA RIGQK +V + RLIT ++EE + R
Sbjct: 901 LGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITNDSVEEVILERAHQ 960
Query: 886 KHFLTNKILKNPQQRRFFKARNMKDLFT--LNDDGNGGSTETSN 927
K + K+++ + A + L D NG E ++
Sbjct: 961 KLDIDGKVIQAGKFDNKSTAEEQEAFLKRLLEADANGADNEEND 1004
Score = 151 (58.2 bits), Expect = 7.5e-65, Sum P(4) = 7.5e-65
Identities = 31/85 (36%), Positives = 46/85 (54%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTL 461
L +YQ G++W+ L+ GI+ DEMGLGKTIQ +S + L +++ P++
Sbjct: 501 LKEYQMKGLEWMVSLYNNHLNGILADEMGLGKTIQSISLVTYLIEKKHENKFLIIVPLST 560
Query: 462 LRQWKREAEKWYPSFHVELLHDSAQ 486
+ W E EKW PS V + S Q
Sbjct: 561 ITNWTLEFEKWAPSIKVIVYKGSQQ 585
Score = 55 (24.4 bits), Expect = 7.5e-65, Sum P(4) = 7.5e-65
Identities = 20/86 (23%), Positives = 36/86 (41%)
Query: 112 EKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKG--ITSKGIEHD--KFIQ 167
EK + P L A +L+ LKK +A+ K H K + K K+++
Sbjct: 303 EKRSFNVRPKIEQRNPQLLAVQLEELKKLEAREAKRKQHIEKVDLVVEKSTSRSEAKYVR 362
Query: 168 DLVKEEHRPKRKSKEAQKPGKDRSKQ 193
D + + ++ + Q K+ SK+
Sbjct: 363 DHYRSHYLVRQINNFHQTTEKEESKK 388
Score = 38 (18.4 bits), Expect = 7.5e-65, Sum P(4) = 7.5e-65
Identities = 8/34 (23%), Positives = 17/34 (50%)
Query: 960 DDAVGDKENNLEIGSSRRKGKEKVDNIGDEVDEE 993
++ + ++ N I + K D +G+E DE+
Sbjct: 1107 EERIAKRKRNKAIREGLLEEDIKDDEVGEEDDED 1140
Score = 38 (18.4 bits), Expect = 1.6e-05, Sum P(3) = 1.6e-05
Identities = 10/52 (19%), Positives = 21/52 (40%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDAIMN 1017
K N L +G+ K + + +++ + I F + S +N + N
Sbjct: 761 KHNALFVGADVGGAKSGIKGLNNKIMQLRKICNHPFVFEEVESVLNSSRLTN 812
Score = 38 (18.4 bits), Expect = 6.0e-05, Sum P(4) = 6.0e-05
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 667 DVNAQLPKKTEH-VLFCSLTEEQRA 690
++N L + E VLF S+ EE+++
Sbjct: 1010 ELNEILARSEEEKVLFASMDEERKS 1034
>UNIPROTKB|K7GNV1 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360492.1 Ensembl:ENSSSCT00000032734
Uniprot:K7GNV1
Length = 1061
Score = 578 (208.5 bits), Expect = 8.5e-65, Sum P(4) = 8.5e-65
Identities = 141/393 (35%), Positives = 223/393 (56%)
Query: 529 NRVLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV 586
+ ++ E + +T+YE + + EK + W Y V+DE HRI+N +++S + ++ ++
Sbjct: 279 DEMMPGEWDVCVTSYEMV--IKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKST 336
Query: 587 HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAY 646
+R+++TG P+QN L ELW+L +F+ P F++ F +G
Sbjct: 337 NRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQ--------KLVE 388
Query: 647 RCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD 706
R VL+ P+LLRR+K DV LP K E ++ L++ QR Y L +++ +
Sbjct: 389 RLHAVLK----PFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMK-DIDVLNS 443
Query: 707 -GSRNSLYGIDVM---RKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVW 758
G + + ++++ RK CNHP L + + P Y E S KM V+ ++L
Sbjct: 444 AGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG--PPYTTDEHIVSNSGKMVVLDKLLAKL 501
Query: 759 KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYN--NSSDVFI 816
K+QG RVL+F+Q ++LDILE + + GYEY R+DG TP ++R I+ +N NSS FI
Sbjct: 502 KEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEAIEAFNVPNSSR-FI 560
Query: 817 FILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIE 876
F+L+T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQK+ V V+RLIT T+E
Sbjct: 561 FMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVE 620
Query: 877 EKVYHRQIYKHFLTNKILKNPQQRRFFKARNMK 909
E++ R K L + ++ QQ R ++ K
Sbjct: 621 ERIVERAEIKLRLDSIVI---QQGRLIDQQSNK 650
Score = 172 (65.6 bits), Expect = 8.5e-65, Sum P(4) = 8.5e-65
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL L+ GI+ DEMGLGKT+Q ++ LG L H+ N+ P +V+ P +
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 245
Query: 461 LLRQWKREAEKWYPSFHV 478
L W E ++W PS V
Sbjct: 246 TLHNWMNEFKRWVPSLRV 263
Score = 47 (21.6 bits), Expect = 4.4e-07, Sum P(4) = 4.4e-07
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QR ++ MKD+ LN G NI QL + N
Sbjct: 426 QREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCN 464
Score = 43 (20.2 bits), Expect = 8.5e-65, Sum P(4) = 8.5e-65
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVD 991
++ N I ++ + G++ +DNI EV+
Sbjct: 854 RDFNQFIKANEKYGRDDIDNIAREVE 879
Score = 37 (18.1 bits), Expect = 8.5e-65, Sum P(4) = 8.5e-65
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 280 AAQARPSTKLLDPESLPKL 298
AA+A S K +DPE K+
Sbjct: 72 AAKASKSEKEMDPEYEEKM 90
Score = 37 (18.1 bits), Expect = 4.1e-51, Sum P(3) = 4.1e-51
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 492 KKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINR 530
K AK+S ++ + D +YE + + K+++ L+ +
Sbjct: 70 KLAAKASKSEKE----MDPEYEEKMKADRAKRFEFLLKQ 104
>UNIPROTKB|E2QVR5 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 SUPFAM:SSF101224
Ensembl:ENSCAFT00000029649 Uniprot:E2QVR5
Length = 1073
Score = 566 (204.3 bits), Expect = 9.1e-65, Sum P(4) = 9.1e-65
Identities = 139/395 (35%), Positives = 223/395 (56%)
Query: 529 NRVLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV 586
+ ++ E + +T+YE + + EK + W Y V+DE HRI+N +++S + ++ ++
Sbjct: 288 DEMMPGEWDVCVTSYEMV--IKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKST 345
Query: 587 HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAY 646
+R+++TG P+QN L ELW+L +F+ P F++ F +G
Sbjct: 346 NRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQ--------KLVE 397
Query: 647 RCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD 706
R VL+ P+LLRR+K DV LP K E ++ L++ QR + + +++ +
Sbjct: 398 RLHAVLK----PFLLRRIKTDVEKSLPPKKEIKVYLGLSKMQREWWYTKILMKDIDVLNS 453
Query: 707 -GSRNSLYGIDVM---RKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVW 758
G + + ++++ RK CNHP L + + P Y E S KM V+ ++L
Sbjct: 454 AGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG--PPYTTDEHIVSNSGKMVVLDKLLAKL 511
Query: 759 KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQR--MALIDEYN--NSSDV 814
K+QG RVL+F+Q ++LDILE + + GYEY R+DG TP ++R I+ +N NSS
Sbjct: 512 KEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREKKEAIEAFNAPNSSK- 570
Query: 815 FIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGT 874
FIF+L+T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQK+ V V+RLIT T
Sbjct: 571 FIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNT 630
Query: 875 IEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMK 909
+EE++ R K L + ++ QQ R ++ K
Sbjct: 631 VEERIVERAEIKLRLDSIVI---QQGRLIDQQSNK 662
Score = 170 (64.9 bits), Expect = 9.1e-65, Sum P(4) = 9.1e-65
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL L+ GI+ DEMGLGKT+Q ++ LG L H+ N+ P +V+ P +
Sbjct: 195 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 254
Query: 461 LLRQWKREAEKWYPSFHV 478
L W E ++W PS V
Sbjct: 255 TLYNWMNEFKRWVPSLRV 272
Score = 53 (23.7 bits), Expect = 9.1e-65, Sum P(4) = 9.1e-65
Identities = 26/107 (24%), Positives = 45/107 (42%)
Query: 217 VETKRDELVRKGILTPFHKLKGFERCIQQPGPSNKQNVPDEQEARSNDPFSASVDRALRM 276
V T++ E ++ I T + LK RC+ +++ + E E + + F DRA R
Sbjct: 48 VATEKGEKKKEMIYT-YDMLK--TRCLLSKASKSEKEMDPEYEEKMVNIFLEKADRAKRF 104
Query: 277 MSEAAQARPSTKLLDPESLPKLDGPTRPFQ-RLKTPFRMPQSEESEV 322
Q + P S K PT P +L P R+ + ++ +
Sbjct: 105 EFLLKQTELFAHFIQP-SAQK--SPTSPLNMKLGRP-RIKKDDKQSL 147
Score = 43 (20.2 bits), Expect = 9.1e-65, Sum P(4) = 9.1e-65
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVD 991
++ N I ++ + G++ +DNI EV+
Sbjct: 866 RDFNQFIKANEKYGRDDIDNIAREVE 891
Score = 42 (19.8 bits), Expect = 6.3e-08, Sum P(4) = 6.3e-08
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 894 LKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
L Q+ ++ MKD+ LN G NI QL + N
Sbjct: 431 LSKMQREWWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCN 474
>UNIPROTKB|E1C0M8 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0000793 "condensed
chromosome" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005677 "chromatin
silencing complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IEA]
[GO:0009790 "embryo development" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0016589 "NURF complex"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0042393 "histone
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0043596 "nuclear replication fork"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0043596 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031491
GO:GO:0043044 GO:GO:0016584 GO:GO:0006334 GO:GO:0005677
GO:GO:0016589 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 EMBL:AADN02016239 EMBL:AADN02016240
IPI:IPI00577188 Ensembl:ENSGALT00000016121 ArrayExpress:E1C0M8
Uniprot:E1C0M8
Length = 1038
Score = 572 (206.4 bits), Expect = 9.5e-65, Sum P(3) = 9.5e-65
Identities = 138/375 (36%), Positives = 214/375 (57%)
Query: 531 VLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHR 588
+L E + +T+YE L + EK + W Y V+DE HRI+N +++S + ++ +T +R
Sbjct: 260 LLPGEWDVCVTSYEML--IKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNR 317
Query: 589 IIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRC 648
+++TG P+QN L ELW+L +F+ P F++ F +G R
Sbjct: 318 LLLTGTPLQNNLHELWALLNFLLPDVFNSSEDFDSWFDTNNCLGDQ--------KLVERL 369
Query: 649 AVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD-- 706
+VLR P+LLRR+KADV LP K E ++ L++ QR Y L +++ IL+
Sbjct: 370 HMVLR----PFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMK-DID-ILNSA 423
Query: 707 GSRNSLYGIDVM---RKICNHPDLLEREQSCQ--IPDYGNPERSEKMKVVAQVLKVWKDQ 761
G + + ++++ RK CNHP L + + D S KM V+ ++L K+Q
Sbjct: 424 GKLDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQ 483
Query: 762 GHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILT 820
G RVL+F+Q ++LDILE + + YEY R+DG TP +R A I+ YN S F+F+L+
Sbjct: 484 GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQASINAYNEPGSSKFVFMLS 543
Query: 821 TKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVY 880
T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQ + V V+R IT T+EE++
Sbjct: 544 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIV 603
Query: 881 HRQIYKHFLTNKILK 895
R K L + +++
Sbjct: 604 ERAEMKLRLDSIVIQ 618
Score = 174 (66.3 bits), Expect = 9.5e-65, Sum P(3) = 9.5e-65
Identities = 37/94 (39%), Positives = 53/94 (56%)
Query: 399 FNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVC 457
+ L DYQ G+ WL L+ GI+ DEMGLGKT+Q +S LG + H+ N+ P +V+
Sbjct: 162 WGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLV 221
Query: 458 PVTLLRQWKREAEKWYPSFH-VELLHDSAQDLGF 490
P + L W E ++W P+ V L+ D Q F
Sbjct: 222 PKSTLHNWMNEFKRWVPTLRAVCLIGDKDQRAAF 255
Score = 45 (20.9 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QR ++ MKD+ LN G NI QL + N
Sbjct: 405 QREWYTRILMKDIDILNSAGKLDKMRLLNILMQLRKCCN 443
Score = 42 (19.8 bits), Expect = 9.5e-65, Sum P(3) = 9.5e-65
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVDEET 994
++ N I ++ + G++ ++NI EV+ +T
Sbjct: 833 RDFNQFIKANEKWGRDDIENIAREVEGKT 861
>CGD|CAL0002614 [details] [associations]
symbol:orf19.4502 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0017025 "TBP-class protein binding" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045898 "regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 CGD:CAL0002614 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 InterPro:IPR022707 Pfam:PF12054 EMBL:AACQ01000142
EMBL:AACQ01000141 RefSeq:XP_712896.1 RefSeq:XP_712928.1
ProteinModelPortal:Q59TC9 STRING:Q59TC9 GeneID:3645462
GeneID:3645500 KEGG:cal:CaO19.11978 KEGG:cal:CaO19.4502
Uniprot:Q59TC9
Length = 1915
Score = 350 (128.3 bits), Expect = 1.1e-64, Sum P(4) = 1.1e-64
Identities = 85/236 (36%), Positives = 128/236 (54%)
Query: 699 SEVEQILDGSRNSLYGIDVMRKICNHPDLL-EREQSCQIPDYGNPERSEKMKVVAQVLKV 757
+E+ Q L L I+ K+ + +LL E Q +Y N +K Q ++
Sbjct: 1618 AEINQFLISRNTDLRNIEHAPKLLSLKNLLLECGIGSQDSEYNNNVSKKKSLQQQQQQQL 1677
Query: 758 WKDQG----HRVLLFAQTQQMLDILESFLIAS---GYEYRRMDGLTPVKQRMALIDEYNN 810
G HR L+F Q + MLDI+E+ L+ + R+DG T + R +++ ++N
Sbjct: 1678 ISADGVISEHRALIFCQLKDMLDIVENELLRKYLPSVTFMRLDGSTDPRDRQSIVRKFNE 1737
Query: 811 SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLI 870
+ + +LTTKVGGLG NLTGA+ VI + DWNP D+QA +RA R+GQK+ V VYRLI
Sbjct: 1738 DPSIDVLLLTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRLGQKKVVNVYRLI 1797
Query: 871 TRGTIEEKVYHRQIYKHFLTNKILKNPQQR--RFFKARNMKDLFTLNDDGNGGSTE 924
T+ T+EEK+ Q +K + + I+ N Q + + DLF ++D GNG E
Sbjct: 1798 TKDTLEEKIMGLQKFKMNIASTIV-NQQNAGLQSMDTNQLLDLFDVDDTGNGAKVE 1852
Score = 341 (125.1 bits), Expect = 1.1e-64, Sum P(4) = 1.1e-64
Identities = 73/206 (35%), Positives = 117/206 (56%)
Query: 535 ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGA 594
++ +++T+Y+ R E L ++ Y VLDEGH I+N ++++S K+++ HR+I++G
Sbjct: 1409 DADVVVTSYDVCRNDVESLTKHDYNYCVLDEGHIIKNASSKLSKSVKRVKAEHRLILSGT 1468
Query: 595 PIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRD 654
PIQN + ELWSLFDF+ PG LG VF +FA PI + S + L
Sbjct: 1469 PIQNNVLELWSLFDFLMPGFLGTEKVFHEKFAKPIAASRNSKTSSKEQEAGALAMESLHK 1528
Query: 655 LIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL--------D 706
++P++LRR+K DV + LP K +C L++ Q+ +Y+ F A ++ E I +
Sbjct: 1529 QVLPFMLRRLKEDVLSDLPPKIIQDYYCELSDLQKKLYKDF-AKTQKETIKTDVQGSEKE 1587
Query: 707 GSRNSLYGIDVMRKICNHPDLLEREQ 732
G + + MRK+CNHP L+ EQ
Sbjct: 1588 GKTHVFQALQYMRKLCNHPALVMSEQ 1613
Score = 132 (51.5 bits), Expect = 1.1e-64, Sum P(4) = 1.1e-64
Identities = 33/97 (34%), Positives = 52/97 (53%)
Query: 394 IPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF------- 446
+P +I L YQ+ GV WL L+ GI+ D+MGLGKT+Q + + + H
Sbjct: 1294 LPVTIKATLRKYQQEGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIVSSDHHIREENFK 1353
Query: 447 ---SNMYK--PSIVVCPVTLLRQWKREAEKWYPSFHV 478
S Y+ PS+V+CP +L+ W++E ++ P V
Sbjct: 1354 ETGSAEYRKLPSLVICPPSLIGHWEQEINQYAPFMKV 1390
Score = 43 (20.2 bits), Expect = 1.1e-64, Sum P(4) = 1.1e-64
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 68 NKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQ 106
NK+R+V+ +++ + + E DID DST Q
Sbjct: 258 NKIRSVDISQSSLSRQM-----IENGEGMDIDSKDSTPQ 291
Score = 37 (18.1 bits), Expect = 1.6e-24, Sum P(3) = 1.6e-24
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 606 LFD-FVFPGKLGVLPVFEAEFAVPITVGGYANASP 639
LFD FV KL + + +P+ V G A A P
Sbjct: 855 LFDVFVTAAKLSPSRIPQ----IPVVVQGEAEAGP 885
>UNIPROTKB|F1N052 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 EMBL:DAAA02044371 IPI:IPI00868566 UniGene:Bt.103096
Ensembl:ENSBTAT00000004408 Uniprot:F1N052
Length = 1052
Score = 572 (206.4 bits), Expect = 1.1e-64, Sum P(3) = 1.1e-64
Identities = 138/375 (36%), Positives = 214/375 (57%)
Query: 531 VLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHR 588
+L E + +T+YE L + EK + W Y V+DE HRI+N +++S + ++ +T +R
Sbjct: 275 LLPGEWDVCVTSYEML--IKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNR 332
Query: 589 IIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRC 648
+++TG P+QN L ELWSL +F+ P F++ F +G R
Sbjct: 333 LLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQ--------KLVERL 384
Query: 649 AVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD-- 706
+VLR P+LLRR+KADV LP K E ++ L++ QR Y L +++ IL+
Sbjct: 385 HMVLR----PFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMK-DID-ILNSA 438
Query: 707 GSRNSLYGIDVM---RKICNHPDLLEREQSCQ--IPDYGNPERSEKMKVVAQVLKVWKDQ 761
G + + ++++ RK CNHP L + + D S KM V+ ++L K+Q
Sbjct: 439 GKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQ 498
Query: 762 GHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILT 820
G RVL+F+Q ++LDILE + + YEY R+DG TP +R I+ YN +S F+F+L+
Sbjct: 499 GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLS 558
Query: 821 TKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVY 880
T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQ + V V+R IT T+EE++
Sbjct: 559 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIV 618
Query: 881 HRQIYKHFLTNKILK 895
R K L + +++
Sbjct: 619 ERAEMKLRLDSIVIQ 633
Score = 174 (66.3 bits), Expect = 1.1e-64, Sum P(3) = 1.1e-64
Identities = 37/94 (39%), Positives = 53/94 (56%)
Query: 399 FNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVC 457
+ L DYQ G+ WL L+ GI+ DEMGLGKT+Q +S LG + H+ N+ P +V+
Sbjct: 177 WGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLV 236
Query: 458 PVTLLRQWKREAEKWYPSFH-VELLHDSAQDLGF 490
P + L W E ++W P+ V L+ D Q F
Sbjct: 237 PKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAF 270
Score = 46 (21.3 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QR ++ MKD+ LN G NI QL + N
Sbjct: 420 QREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCN 458
Score = 42 (19.8 bits), Expect = 1.1e-64, Sum P(3) = 1.1e-64
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVDEET 994
++ N I ++ + G++ ++NI EV+ +T
Sbjct: 848 RDFNQFIKANEKWGRDDIENIAREVEGKT 876
>UNIPROTKB|E2QWV0 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0043596 "nuclear replication fork"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA] [GO:0042393 "histone binding" evidence=IEA]
[GO:0031213 "RSF complex" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA]
[GO:0016584 "nucleosome positioning" evidence=IEA] [GO:0009790
"embryo development" evidence=IEA] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0006334 "nucleosome
assembly" evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IEA] [GO:0000183
"chromatin silencing at rDNA" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0005730
GO:GO:0003677 GO:GO:0006352 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302 GO:GO:0004386
GO:GO:0000793 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0005677 GO:GO:0016589 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 OMA:EDYCHWR GO:GO:0031213 CTD:8467
EMBL:AAEX03010002 RefSeq:XP_532676.1 ProteinModelPortal:E2QWV0
Ensembl:ENSCAFT00000012062 GeneID:475451 KEGG:cfa:475451
NextBio:20851293 Uniprot:E2QWV0
Length = 1052
Score = 572 (206.4 bits), Expect = 1.1e-64, Sum P(3) = 1.1e-64
Identities = 138/375 (36%), Positives = 214/375 (57%)
Query: 531 VLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHR 588
+L E + +T+YE L + EK + W Y V+DE HRI+N +++S + ++ +T +R
Sbjct: 275 LLPGEWDVCVTSYEML--IKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNR 332
Query: 589 IIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRC 648
+++TG P+QN L ELWSL +F+ P F++ F +G R
Sbjct: 333 LLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQ--------KLVERL 384
Query: 649 AVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD-- 706
+VLR P+LLRR+KADV LP K E ++ L++ QR Y L +++ IL+
Sbjct: 385 HMVLR----PFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMK-DID-ILNSA 438
Query: 707 GSRNSLYGIDVM---RKICNHPDLLEREQSCQ--IPDYGNPERSEKMKVVAQVLKVWKDQ 761
G + + ++++ RK CNHP L + + D S KM V+ ++L K+Q
Sbjct: 439 GKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQ 498
Query: 762 GHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILT 820
G RVL+F+Q ++LDILE + + YEY R+DG TP +R I+ YN +S F+F+L+
Sbjct: 499 GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLS 558
Query: 821 TKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVY 880
T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQ + V V+R IT T+EE++
Sbjct: 559 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIV 618
Query: 881 HRQIYKHFLTNKILK 895
R K L + +++
Sbjct: 619 ERAEMKLRLDSIVIQ 633
Score = 174 (66.3 bits), Expect = 1.1e-64, Sum P(3) = 1.1e-64
Identities = 37/94 (39%), Positives = 53/94 (56%)
Query: 399 FNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVC 457
+ L DYQ G+ WL L+ GI+ DEMGLGKT+Q +S LG + H+ N+ P +V+
Sbjct: 177 WGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLV 236
Query: 458 PVTLLRQWKREAEKWYPSFH-VELLHDSAQDLGF 490
P + L W E ++W P+ V L+ D Q F
Sbjct: 237 PKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAF 270
Score = 46 (21.3 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QR ++ MKD+ LN G NI QL + N
Sbjct: 420 QREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCN 458
Score = 42 (19.8 bits), Expect = 1.1e-64, Sum P(3) = 1.1e-64
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVDEET 994
++ N I ++ + G++ ++NI EV+ +T
Sbjct: 848 RDFNQFIKANEKWGRDDIENIAREVEGKT 876
>UNIPROTKB|F1RRG9 [details] [associations]
symbol:SMARCA5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IEA]
[GO:0042393 "histone binding" evidence=IEA] [GO:0031213 "RSF
complex" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016589 "NURF complex" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0009790 "embryo development"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0006334 "nucleosome assembly" evidence=IEA]
[GO:0006302 "double-strand break repair" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005677 "chromatin silencing complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000793 "condensed chromosome"
evidence=IEA] [GO:0000183 "chromatin silencing at rDNA"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
GO:GO:0005730 GO:GO:0003677 GO:GO:0006352 GO:GO:0016887
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009790 GO:GO:0043596
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0000183 GO:GO:0006302
GO:GO:0004386 GO:GO:0000793 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016584
GO:GO:0006334 GO:GO:0005677 GO:GO:0016589
GeneTree:ENSGT00680000100002 KO:K11654 SUPFAM:SSF101224 OMA:EDYCHWR
GO:GO:0031213 CTD:8467 EMBL:CU463195 RefSeq:XP_003129222.2
UniGene:Ssc.97261 Ensembl:ENSSSCT00000009907 GeneID:100188903
KEGG:ssc:100188903 ArrayExpress:F1RRG9 Uniprot:F1RRG9
Length = 1052
Score = 572 (206.4 bits), Expect = 1.1e-64, Sum P(3) = 1.1e-64
Identities = 138/375 (36%), Positives = 214/375 (57%)
Query: 531 VLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHR 588
+L E + +T+YE L + EK + W Y V+DE HRI+N +++S + ++ +T +R
Sbjct: 275 LLPGEWDVCVTSYEML--IKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNR 332
Query: 589 IIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRC 648
+++TG P+QN L ELWSL +F+ P F++ F +G R
Sbjct: 333 LLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQ--------KLVERL 384
Query: 649 AVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD-- 706
+VLR P+LLRR+KADV LP K E ++ L++ QR Y L +++ IL+
Sbjct: 385 HMVLR----PFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMK-DID-ILNSA 438
Query: 707 GSRNSLYGIDVM---RKICNHPDLLEREQSCQ--IPDYGNPERSEKMKVVAQVLKVWKDQ 761
G + + ++++ RK CNHP L + + D S KM V+ ++L K+Q
Sbjct: 439 GKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQ 498
Query: 762 GHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILT 820
G RVL+F+Q ++LDILE + + YEY R+DG TP +R I+ YN +S F+F+L+
Sbjct: 499 GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQESINAYNEPNSTKFVFMLS 558
Query: 821 TKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVY 880
T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQ + V V+R IT T+EE++
Sbjct: 559 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIV 618
Query: 881 HRQIYKHFLTNKILK 895
R K L + +++
Sbjct: 619 ERAEMKLRLDSIVIQ 633
Score = 174 (66.3 bits), Expect = 1.1e-64, Sum P(3) = 1.1e-64
Identities = 37/94 (39%), Positives = 53/94 (56%)
Query: 399 FNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVC 457
+ L DYQ G+ WL L+ GI+ DEMGLGKT+Q +S LG + H+ N+ P +V+
Sbjct: 177 WGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLV 236
Query: 458 PVTLLRQWKREAEKWYPSFH-VELLHDSAQDLGF 490
P + L W E ++W P+ V L+ D Q F
Sbjct: 237 PKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAF 270
Score = 46 (21.3 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QR ++ MKD+ LN G NI QL + N
Sbjct: 420 QREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCN 458
Score = 42 (19.8 bits), Expect = 1.1e-64, Sum P(3) = 1.1e-64
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVDEET 994
++ N I ++ + G++ ++NI EV+ +T
Sbjct: 848 RDFNQFIKANEKWGRDDIENIAREVEGKT 876
>UNIPROTKB|E1C1A9 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AADN02041467 EMBL:AADN02041468 EMBL:AADN02041469
EMBL:AADN02041470 IPI:IPI00575702 Ensembl:ENSGALT00000011260
Uniprot:E1C1A9
Length = 1727
Score = 567 (204.7 bits), Expect = 1.3e-64, Sum P(3) = 1.3e-64
Identities = 137/396 (34%), Positives = 226/396 (57%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEKLL-DVEWGYAVLDEGHRI 569
Y G+L SRN ++++ + ++ R + LITTYE L L + +L + W + +DE HR+
Sbjct: 566 YIGDLMSRNMIREYEWIHSQSKRLKFNALITTYEIL-LKDKAVLGSISWAFLGVDEAHRL 624
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629
+N ++ + ++ HR+++TG P+QN L ELWSL F+ P K FE +
Sbjct: 625 KNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-- 682
Query: 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQR 689
G N Y+ L ++ P+LLRR+K DV LP K E +L ++ Q+
Sbjct: 683 ---GRENG--------YQS---LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQK 728
Query: 690 AVYRAFLASSEVEQILDGSRNSLYG-IDV---MRKICNHPDLL----EREQSCQIPDYGN 741
Y+ ++ + + + G+R S G +++ ++K CNH L+ E E+ I +
Sbjct: 729 QYYK-WILTRNYKALSKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGIETLQS 787
Query: 742 PERSE-KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQ 800
RS K+ ++ ++L +D+G+RVL+F+Q +MLDIL +L Y ++R+DG +
Sbjct: 788 LIRSSGKLILLDKLLTRLRDRGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEI 847
Query: 801 RMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIG 859
R +D +N + S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA RIG
Sbjct: 848 RKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG 907
Query: 860 QKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
QK+ V +YRL+T+GT+EE++ R K L + +++
Sbjct: 908 QKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQ 943
Score = 184 (69.8 bits), Expect = 1.3e-64, Sum P(3) = 1.3e-64
Identities = 44/100 (44%), Positives = 56/100 (56%)
Query: 383 PPFVTLEGGLKIPESIFNN---LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLS 439
P FV L+ K P I + L DYQ G+ WL C+ I+ DEMGLGKTIQ +S
Sbjct: 467 PRFVALK---KQPSYIGSENLELRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTIS 523
Query: 440 FLGAL-HFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHV 478
FL L H +Y P +VV P++ L W+RE E W P +V
Sbjct: 524 FLSYLFHQHQLYGPFLVVVPLSTLTSWQREFEVWAPEINV 563
Score = 52 (23.4 bits), Expect = 1.3e-64, Sum P(3) = 1.3e-64
Identities = 27/149 (18%), Positives = 58/149 (38%)
Query: 51 DKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGRE 110
DKS+ + S S ++ A S + ++ ++ + +S + E
Sbjct: 5 DKSQGEEGSVHSNASSHSASEEASGSDSASQSESEQGSEQGSESNSSSESSESQSESESE 64
Query: 111 DEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKF-IQDL 169
S Q +P + + A +R+ +KK + ++ + S+ E +F I+D
Sbjct: 65 STGSKSQQTPPETKEKPASKKERIADVKKMWEEY-PDVYGVRRSNRSRQ-EPSRFNIKDE 122
Query: 170 VKEEHRPKRKSKEAQKPGKDRSKQQKTVS 198
E + + QK K + K ++ +S
Sbjct: 123 ASSESENESPKRRGQKQVKRKKKWKREIS 151
Score = 51 (23.0 bits), Expect = 1.6e-64, Sum P(3) = 1.6e-64
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 88 RRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPND 122
R+VS+++D+D +DG++ ++ R V +D
Sbjct: 205 RQVSSEDDDDDEDGETPKRQTRRRAAKNVSYKEDD 239
Score = 46 (21.3 bits), Expect = 5.1e-09, Sum P(3) = 5.1e-09
Identities = 31/143 (21%), Positives = 62/143 (43%)
Query: 1020 DEEKMRLEEQASQVAQRAAEALRQS--RMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGS 1077
D EK L + Q+ + AL++ + + +R+ ++ T + T+G + V +
Sbjct: 706 DVEKS-LPAKVEQILRVEMSALQKQYYKWILTRNYKALSKGT-RGSTSGFLNIVMELKKC 763
Query: 1078 TVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIR--GNQENAVGAGLERQ 1135
LIKP E + + G S+GK++ +LL R+R GN+ + + + R
Sbjct: 764 CNHCYLIKPPE-ENERENGIETLQSLIRSSGKLILLDKLLTRLRDRGNRV-LIFSQMVRM 821
Query: 1136 FEVASSSANVARFADTRTSRSSK 1158
++ + + + R S K
Sbjct: 822 LDILAEYLTIKHYPFQRLDGSIK 844
Score = 41 (19.5 bits), Expect = 1.1e-49, Sum P(3) = 1.1e-49
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 491 RKKRAKSSDTDNDGEG 506
RK++ S D D+D +G
Sbjct: 203 RKRQVSSEDDDDDEDG 218
Score = 40 (19.1 bits), Expect = 2.3e-63, Sum P(3) = 2.3e-63
Identities = 17/64 (26%), Positives = 27/64 (42%)
Query: 88 RRVSTKEDNDIDDGDSTEQDGREDEKSAVQAS-P---NDMTLQHALTADRLKSLKKTKAQ 143
R +S +E+++ D GD E E ++A P M +L+ KK K Q
Sbjct: 148 REISGEEEDE-DGGDQGTSAESEPEPKRIKAKRPVQRRTMAKTSVKKPPKLQRGKKRKRQ 206
Query: 144 LVKE 147
+ E
Sbjct: 207 VSSE 210
Score = 40 (19.1 bits), Expect = 1.4e-49, Sum P(3) = 1.4e-49
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 489 GFRKKRAKSSDTDNDGE 505
G ++KR SS+ D+D E
Sbjct: 200 GKKRKRQVSSEDDDDDE 216
>RGD|1308832 [details] [associations]
symbol:Smarca5 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 5"
species:10116 "Rattus norvegicus" [GO:0000183 "chromatin silencing
at rDNA" evidence=ISO] [GO:0000793 "condensed chromosome"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005677 "chromatin silencing complex" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006333 "chromatin assembly or disassembly"
evidence=ISO] [GO:0006334 "nucleosome assembly" evidence=ISO]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISO] [GO:0009790
"embryo development" evidence=ISO] [GO:0016584 "nucleosome
positioning" evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0031213 "RSF
complex" evidence=ISO] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0043596 "nuclear
replication fork" evidence=ISO] [GO:0042393 "histone binding"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1308832 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 OMA:EDYCHWR
IPI:IPI00359419 PRIDE:F1LNL2 Ensembl:ENSRNOT00000024568
UCSC:RGD:1308832 ArrayExpress:F1LNL2 Uniprot:F1LNL2
Length = 1051
Score = 571 (206.1 bits), Expect = 1.4e-64, Sum P(3) = 1.4e-64
Identities = 138/375 (36%), Positives = 214/375 (57%)
Query: 531 VLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHR 588
+L E + +T+YE L + EK + W Y V+DE HRI+N +++S + ++ +T +R
Sbjct: 274 LLPGEWDVCVTSYEML--IKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNR 331
Query: 589 IIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRC 648
+++TG P+QN L ELWSL +F+ P F++ F +G R
Sbjct: 332 LLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQ--------KLVERL 383
Query: 649 AVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD-- 706
+VLR P+LLRR+KADV LP K E ++ L++ QR Y L +++ IL+
Sbjct: 384 HMVLR----PFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMK-DID-ILNSA 437
Query: 707 GSRNSLYGIDVM---RKICNHPDLLEREQSCQ--IPDYGNPERSEKMKVVAQVLKVWKDQ 761
G + + ++++ RK CNHP L + + D S KM V+ ++L K+Q
Sbjct: 438 GKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQ 497
Query: 762 GHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILT 820
G RVL+F+Q ++LDILE + + YEY R+DG TP +R I+ YN +S F+F+L+
Sbjct: 498 GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLS 557
Query: 821 TKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVY 880
T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQ + V V+R IT T+EE++
Sbjct: 558 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIV 617
Query: 881 HRQIYKHFLTNKILK 895
R K L + +++
Sbjct: 618 ERAEMKLRLDSIVIQ 632
Score = 174 (66.3 bits), Expect = 1.4e-64, Sum P(3) = 1.4e-64
Identities = 37/94 (39%), Positives = 53/94 (56%)
Query: 399 FNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVC 457
+ L DYQ G+ WL L+ GI+ DEMGLGKT+Q +S LG + H+ N+ P +V+
Sbjct: 176 WGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLV 235
Query: 458 PVTLLRQWKREAEKWYPSFH-VELLHDSAQDLGF 490
P + L W E ++W P+ V L+ D Q F
Sbjct: 236 PKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAF 269
Score = 46 (21.3 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QR ++ MKD+ LN G NI QL + N
Sbjct: 419 QREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCN 457
Score = 42 (19.8 bits), Expect = 1.4e-64, Sum P(3) = 1.4e-64
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVDEET 994
++ N I ++ + G++ ++NI EV+ +T
Sbjct: 847 RDFNQFIKANEKWGRDDIENIAREVEGKT 875
>UNIPROTKB|O60264 [details] [associations]
symbol:SMARCA5 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A member 5"
species:9606 "Homo sapiens" [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000183 "chromatin silencing at rDNA" evidence=IEA] [GO:0005677
"chromatin silencing complex" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0009790 "embryo
development" evidence=IEA] [GO:0006334 "nucleosome assembly"
evidence=IDA;TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=IDA]
[GO:0016584 "nucleosome positioning" evidence=IDA] [GO:0031213 "RSF
complex" evidence=IPI] [GO:0042393 "histone binding" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IDA] [GO:0000793 "condensed
chromosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016589 "NURF complex" evidence=IDA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0034080
"CENP-A containing nucleosome assembly at centromere" evidence=TAS]
[GO:0043596 "nuclear replication fork" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0006200 "ATP
catabolic process" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0006352 GO:GO:0006357 GO:GO:0016887 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009790 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0000183 GO:GO:0006302 GO:GO:0004386 GO:GO:0000793
GO:GO:0034080 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016584 GO:GO:0005677
GO:GO:0016589 HOGENOM:HOG000192862 KO:K11654 SUPFAM:SSF101224
OMA:EDYCHWR GO:GO:0031213 HOVERGEN:HBG056329 OrthoDB:EOG44J2H9
EMBL:AB010882 EMBL:BC023144 IPI:IPI00297211 RefSeq:NP_003592.3
UniGene:Hs.558422 ProteinModelPortal:O60264 SMR:O60264
IntAct:O60264 MINT:MINT-2981772 STRING:O60264 PhosphoSite:O60264
PaxDb:O60264 PeptideAtlas:O60264 PRIDE:O60264 DNASU:8467
Ensembl:ENST00000283131 GeneID:8467 KEGG:hsa:8467 UCSC:uc003ijg.3
CTD:8467 GeneCards:GC04P144434 HGNC:HGNC:11101 HPA:CAB005227
HPA:HPA008751 MIM:603375 neXtProt:NX_O60264 PharmGKB:PA35951
InParanoid:O60264 PhylomeDB:O60264 GenomeRNAi:8467 NextBio:31688
ArrayExpress:O60264 Bgee:O60264 CleanEx:HS_SMARCA5
Genevestigator:O60264 GermOnline:ENSG00000153147 Uniprot:O60264
Length = 1052
Score = 571 (206.1 bits), Expect = 1.4e-64, Sum P(3) = 1.4e-64
Identities = 138/375 (36%), Positives = 214/375 (57%)
Query: 531 VLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHR 588
+L E + +T+YE L + EK + W Y V+DE HRI+N +++S + ++ +T +R
Sbjct: 275 LLPGEWDVCVTSYEML--IKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNR 332
Query: 589 IIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRC 648
+++TG P+QN L ELWSL +F+ P F++ F +G R
Sbjct: 333 LLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQ--------KLVERL 384
Query: 649 AVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD-- 706
+VLR P+LLRR+KADV LP K E ++ L++ QR Y L +++ IL+
Sbjct: 385 HMVLR----PFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMK-DID-ILNSA 438
Query: 707 GSRNSLYGIDVM---RKICNHPDLLEREQSCQ--IPDYGNPERSEKMKVVAQVLKVWKDQ 761
G + + ++++ RK CNHP L + + D S KM V+ ++L K+Q
Sbjct: 439 GKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQ 498
Query: 762 GHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILT 820
G RVL+F+Q ++LDILE + + YEY R+DG TP +R I+ YN +S F+F+L+
Sbjct: 499 GSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLS 558
Query: 821 TKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVY 880
T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQ + V V+R IT T+EE++
Sbjct: 559 TRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIV 618
Query: 881 HRQIYKHFLTNKILK 895
R K L + +++
Sbjct: 619 ERAEMKLRLDSIVIQ 633
Score = 174 (66.3 bits), Expect = 1.4e-64, Sum P(3) = 1.4e-64
Identities = 37/94 (39%), Positives = 53/94 (56%)
Query: 399 FNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVC 457
+ L DYQ G+ WL L+ GI+ DEMGLGKT+Q +S LG + H+ N+ P +V+
Sbjct: 177 WGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLV 236
Query: 458 PVTLLRQWKREAEKWYPSFH-VELLHDSAQDLGF 490
P + L W E ++W P+ V L+ D Q F
Sbjct: 237 PKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAF 270
Score = 46 (21.3 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QR ++ MKD+ LN G NI QL + N
Sbjct: 420 QREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCN 458
Score = 42 (19.8 bits), Expect = 1.4e-64, Sum P(3) = 1.4e-64
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVDEET 994
++ N I ++ + G++ ++NI EV+ +T
Sbjct: 848 RDFNQFIKANEKWGRDDIENIAREVEGKT 876
>RGD|1565642 [details] [associations]
symbol:Srcap "Snf2-related CREBBP activator protein"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005794 "Golgi apparatus" evidence=ISO]
[GO:0043234 "protein complex" evidence=ISO] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00384 SMART:SM00490 RGD:1565642
GO:GO:0005524 GO:GO:0005634 GO:GO:0005794 GO:GO:0043234
GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 OrthoDB:EOG4B2SWB
IPI:IPI00778475 Ensembl:ENSRNOT00000054997 UCSC:RGD:1565642
ArrayExpress:D3ZWX7 Uniprot:D3ZWX7
Length = 3182
Score = 385 (140.6 bits), Expect = 1.8e-64, Sum P(5) = 1.8e-64
Identities = 75/181 (41%), Positives = 118/181 (65%)
Query: 747 KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALID 806
K++ +A +L+ K +GHRVL+F Q +MLD+LE FL G+ Y R+DG T V+QR AL++
Sbjct: 2032 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2091
Query: 807 EYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866
+N +F FIL+T+ GG+G NLTGA+ V+ +D DWNP+ D QA++R RIGQ +DV +
Sbjct: 2092 RFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 2151
Query: 867 YRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFFKARNMKDLFTLNDDGNGGSTET 925
YRLI+ T+EE + + K L + ++ +FK + +++LF + + GS+ +
Sbjct: 2152 YRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDMPLEEPPGSSVS 2211
Query: 926 S 926
S
Sbjct: 2212 S 2212
Score = 273 (101.2 bits), Expect = 1.8e-64, Sum P(5) = 1.8e-64
Identities = 66/192 (34%), Positives = 101/192 (52%)
Query: 540 ITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNK 599
IT+Y+ + + W Y +LDE I+N ++ + R+++TG P+QN
Sbjct: 732 ITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNS 791
Query: 600 LSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPY 659
L ELWSL F+ P F+ F+ P+T G + R VLR P+
Sbjct: 792 LMELWSLMHFLMPHVFQSHREFKEWFSNPLT-GMIEGSQEYNEGLVKRLHKVLR----PF 846
Query: 660 LLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL-DGSRNSLYGIDV- 717
LLRR+K DV Q+PKK EHV+ C L++ QR +Y F+A + ++ L G S+ I +
Sbjct: 847 LLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGHFMSVINILMQ 906
Query: 718 MRKICNHPDLLE 729
+RK+CNHP+L +
Sbjct: 907 LRKVCNHPNLFD 918
Score = 172 (65.6 bits), Expect = 1.8e-64, Sum P(5) = 1.8e-64
Identities = 34/94 (36%), Positives = 56/94 (59%)
Query: 394 IPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN-MYKP 452
IP + L +YQ +G+ WL ++ ++ GI+ DEMGLGKTIQ +S L L + P
Sbjct: 620 IPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGP 679
Query: 453 SIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQ 486
+++ P +++ W+ E ++W PSF + L + AQ
Sbjct: 680 HLIIVPTSVMLNWEMELKRWCPSFKI-LTYYGAQ 712
Score = 51 (23.0 bits), Expect = 1.8e-64, Sum P(5) = 1.8e-64
Identities = 35/143 (24%), Positives = 50/143 (34%)
Query: 18 ANPEDIE----RDVLAAAENVAGXXXXXXXXXXXKPHDKSESIDPSSTSQEKLYNKLRAV 73
AN D E RDV AA+ + D+ + S +SQ + + +
Sbjct: 476 ANSSDCELEETRDVEEAAQEDSSSQSDSAEEHSEDEEDEHSEEEMSGSSQSE---ESESD 532
Query: 74 EFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADR 133
E E S D + + D+D DD R+DE+S V T T
Sbjct: 533 ESEDAQSQSQADEEQE--DEGDDDDDDFGVEYLLARDDERSEVDGGSGPPTPGPTTTLGP 590
Query: 134 LKSLKKTKAQLVKELSHFPKGIT 156
K + A + L PKG T
Sbjct: 591 KKEITDIAAA-AESLQ--PKGYT 610
Score = 50 (22.7 bits), Expect = 2.2e-64, Sum P(5) = 2.2e-64
Identities = 18/86 (20%), Positives = 34/86 (39%)
Query: 50 HDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGR 109
HD P +E+ + + E+ +S+V + D D D+ + +D
Sbjct: 358 HDSDTPDGPEENIEEE-----PSQDLEVDPPSSSVTQCNKQCWHPDED-DEEFTANEDEA 411
Query: 110 EDEKSAVQASPN-DMTLQHALTADRL 134
EDE+ + A + + HA+ L
Sbjct: 412 EDEEDTIAAEEQLEGEVDHAMELSEL 437
Score = 42 (19.8 bits), Expect = 1.8e-64, Sum P(5) = 1.8e-64
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 1014 AIMNAHDEEKMRLEEQAS--QVAQRA 1037
A+ A DEE +R QA QVA+ A
Sbjct: 2232 ALCRAEDEEDIRAATQAKAEQVAELA 2257
Score = 41 (19.5 bits), Expect = 2.9e-29, Sum P(4) = 2.9e-29
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 1131 GLERQFEVASSSANVARFADTRTSRSSK 1158
GL+ ++++ + V R R+SRS K
Sbjct: 1417 GLKAAWKISEAYGLVERMGQDRSSRSRK 1444
Score = 40 (19.1 bits), Expect = 1.7e-40, Sum P(5) = 1.7e-40
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFP 612
R+P + + H+ ++ ++LSE+ F FV P
Sbjct: 1926 RSPGPSHPIFWTYTEAAHQAVLFPQQRLDQLSEIIERFIFVMP 1968
Score = 39 (18.8 bits), Expect = 3.6e-64, Sum P(5) = 3.6e-64
Identities = 16/81 (19%), Positives = 33/81 (40%)
Query: 960 DDAVGDKENN-LEIGSSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDAIM-- 1016
++ V K+ + LE R + +E + E+ L + G + +A
Sbjct: 2218 EETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNENEGFPAGEGEEASRPG 2277
Query: 1017 -NAHDEEKMRLEEQASQVAQR 1036
A DEE R E++ + + ++
Sbjct: 2278 PGAEDEEMSRAEQEIAALVEQ 2298
Score = 38 (18.4 bits), Expect = 3.9e-63, Sum P(5) = 3.9e-63
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 90 VSTKEDNDIDDGDSTEQDGREDEKSAVQ 117
VS +D ID +++ ED++ ++
Sbjct: 279 VSRLDDEAIDGDFQPQEEEEEDDEETIE 306
Score = 37 (18.1 bits), Expect = 8.7e-27, Sum P(5) = 8.7e-27
Identities = 6/16 (37%), Positives = 12/16 (75%)
Query: 184 QKPGKDRSKQQKTVSV 199
++ G+DRS + + +SV
Sbjct: 1432 ERMGQDRSSRSRKISV 1447
>DICTYBASE|DDB_G0271052 [details] [associations]
symbol:snf2b "SNF2-related protein Snf2a"
species:44689 "Dictyostelium discoideum" [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00951 dictyBase:DDB_G0271052 GO:GO:0005524 GO:GO:0005654
EMBL:AAFI02000005 GO:GO:0003677 GO:GO:0006357 GO:GO:0004386
InterPro:IPR011050 SUPFAM:SSF51126 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF47370
KO:K11647 InterPro:IPR014012 PROSITE:PS51204 RefSeq:XP_646649.1
ProteinModelPortal:Q55C32 EnsemblProtists:DDB0220695 GeneID:8617621
KEGG:ddi:DDB_G0271052 InParanoid:Q55C32 OMA:NINDNPN Uniprot:Q55C32
Length = 3247
Score = 598 (215.6 bits), Expect = 2.4e-64, Sum P(4) = 2.4e-64
Identities = 145/414 (35%), Positives = 235/414 (56%)
Query: 539 LITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVC-KQLQTVHRIIMTGAPIQ 597
++TTYE + L ++W Y ++DEGHR++N +++S++ + +R+++TG P+Q
Sbjct: 1814 VVTTYEYIIKDKNALSKIKWNYLIVDEGHRMKNYTSKLSIILGTSYSSRYRLLLTGTPLQ 1873
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVV--LRDL 655
N L ELW+L +F+ P + FE F P G ++++ + ++ L +
Sbjct: 1874 NSLPELWALLNFLLPTIFDCVEDFEQWFNAPFAQTG----EKIEMNEEEQLLIIQRLHKV 1929
Query: 656 IMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL-----DGSRN 710
+ P+LLRR+K +V AQLP K E VL C ++ Q +Y + + V ++ DG+
Sbjct: 1930 LRPFLLRRLKKEVEAQLPDKVEKVLKCDMSAFQAKMYD-LIKTKGVSKLASSGGADGNPK 1988
Query: 711 SLYGID----VMRKICNHPDLLEREQSCQIPDYGNPER-SEKMKVVAQVLKVWKDQGHRV 765
G+ +RKICNHP L ++ I D N R + K ++ ++L K GHRV
Sbjct: 1989 LAKGLKNTYVQLRKICNHPYLFYDDEY-NIDD--NLIRYAGKFDLLDRLLPKLKAAGHRV 2045
Query: 766 LLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVG 824
L+F+Q Q+++ILE F Y++ R+DG T +R L++ +N +S+ FIF+L+T+ G
Sbjct: 2046 LIFSQMTQLINILEVFFAYKDYKFLRLDGSTKSDERGHLLELFNAPNSEYFIFVLSTRAG 2105
Query: 825 GLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQI 884
GLG NL A+ VIIFD DWNP D+QA++RA RIGQKQ V V RL+T ++EE + R
Sbjct: 2106 GLGLNLQTADTVIIFDSDWNPQMDLQAQDRAHRIGQKQTVRVLRLVTAHSVEESILARAN 2165
Query: 885 YKHFLTNKILK----NPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSE 934
+K L KI++ N + R + + ++DL T D+ +T SQ++E
Sbjct: 2166 FKKELDKKIIQAGQFNNKSNRSDRKKMLEDLMT-QDETAEMEKQTVPTDSQINE 2218
Score = 147 (56.8 bits), Expect = 2.4e-64, Sum P(4) = 2.4e-64
Identities = 29/71 (40%), Positives = 41/71 (57%)
Query: 405 YQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVTLLR 463
YQ G+QW+ L+ + GI+ DEMGLGKTIQ ++ + L P +VV P++ L
Sbjct: 1714 YQMQGLQWMVSLYNNKLNGILADEMGLGKTIQTIALVSYLIEVKKNNGPFLVVVPLSTLS 1773
Query: 464 QWKREAEKWYP 474
W +E KW P
Sbjct: 1774 NWGQEFSKWAP 1784
Score = 58 (25.5 bits), Expect = 2.4e-64, Sum P(4) = 2.4e-64
Identities = 20/75 (26%), Positives = 40/75 (53%)
Query: 1121 RGNQENAVGAGLERQFEVASSSANVARFADTRTSRSSKNASDVQPEILIRQICTFMQ-QR 1179
R +QE+ + + + ++ E+ + V + SSK + D++ E+ IR+I + +R
Sbjct: 2256 RLSQEDEIPSWITKEVELGDDLSFVLN--QSIKPGSSKKSLDLENELQIRKILESGKIKR 2313
Query: 1180 GGSSNSACIVEHFKD 1194
++N+A I E F D
Sbjct: 2314 KTANNNAMISEFFDD 2328
Score = 57 (25.1 bits), Expect = 2.4e-64, Sum P(4) = 2.4e-64
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 51 DKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDID-DGDSTEQDGR 109
+K E+ + Q++L + + E E A S + + ++ D DID DG++T +D
Sbjct: 1406 EKEENEEAIRRQQDQLLLQQKEKEGEEDAKQS--EKISIMNITNDVDIDTDGNTTNRDLS 1463
Query: 110 EDEKSAVQASPNDMT 124
+ KS + S N ++
Sbjct: 1464 NNSKSPLVRSSNPIS 1478
Score = 55 (24.4 bits), Expect = 3.9e-64, Sum P(4) = 3.9e-64
Identities = 29/110 (26%), Positives = 53/110 (48%)
Query: 102 DSTEQDGRE-DEKSAVQA-SPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKG 159
+ EQ RE +E+ ++A ND + LK L++TK Q ++EL K
Sbjct: 1341 EKKEQQQREREERERLRALKTND-------ESKYLKLLEQTKNQRLRELFDQTNEFLDK- 1392
Query: 160 IEH----DKF-IQDLVKEEHRPKRKS-----KEAQKPGKDRSKQQKTVSV 199
I H +K IQ+ + E +R+ ++ +K G++ +KQ + +S+
Sbjct: 1393 ISHLLQKEKISIQEKEENEEAIRRQQDQLLLQQKEKEGEEDAKQSEKISI 1442
Score = 49 (22.3 bits), Expect = 3.6e-05, Sum P(3) = 3.6e-05
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 499 DTDNDGEGSHDSDYEGNLSSR-NPKK 523
D D+DG S SD + + S+ PK+
Sbjct: 2327 DDDDDGSSSSSSDSDSDFESKPTPKR 2352
Score = 47 (21.6 bits), Expect = 3.4e-63, Sum P(4) = 3.4e-63
Identities = 70/353 (19%), Positives = 126/353 (35%)
Query: 888 FLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSE--DVNVVGXXXXX 945
F+ N+ +K ++ N + + + G +T+N + +SE D + G
Sbjct: 2279 FVLNQSIKPGSSKKSLDLENELQIRKILESGKI-KRKTANNNAMISEFFDDDDDGSSSSS 2337
Query: 946 XXXXXXXXAASANADDAVGDKENNLEIGSSRRKGKEKVDNIGDEVDEETNILKSLFDANG 1005
+ DK + + ++R++ K + + D+ +TN L D N
Sbjct: 2338 SDSDSDFESKPTPKRTTTSDKPKSSKESNNRKEKKNTKEKLKDK---DTNGLDDDDDDNN 2394
Query: 1006 IHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTA 1065
++ N+D +D + + + E L + DD +
Sbjct: 2395 SNNNNNNDD----YDNNNVSVVATTPSRTNKRKE-LESNYSDEEDDDDDADEEDEEDEDF 2449
Query: 1066 GAPSSVRKKFGSTVGSQLIKPLEGSSSN-KTGEFNSFGAGASAGKVLSSSELLARIRGNQ 1124
P VR K + V + KP S K + NS G G G SS
Sbjct: 2450 QRP--VRSKKRAKVAASK-KPSASSKKQEKEKKANSNGGGGGGGGGDDSSNSNPSTPLTP 2506
Query: 1125 ENAVGAGLERQFEVASSS----ANVARFADTRTSRSSKNASDVQPEILIRQICTFMQQRG 1180
++ + + Q + S S A R A T + S+N Q + I Q
Sbjct: 2507 SSSSSSSITAQPPLPSPSPVKKAGRGRPAGTMKKKISENE---QKYLQIWDAIRADQDEE 2563
Query: 1181 GSSNSACIVEHFKDRVPSK-DLPLFKNLLKE---IATLQKDPSGSRWVLKLNF 1229
G S V ++PSK D P + +KE + T+++ G+++ L+F
Sbjct: 2564 GRKRSDIFV-----KLPSKRDYPDYYITIKEPIDMKTIKERIVGAKFSNPLSF 2611
Score = 46 (21.3 bits), Expect = 7.1e-05, Sum P(3) = 7.1e-05
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 492 KKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
KK K D D G D D + N ++ N
Sbjct: 2371 KKNTKEKLKDKDTNGLDDDDDDNNSNNNN 2399
Score = 44 (20.5 bits), Expect = 7.0e-63, Sum P(4) = 7.0e-63
Identities = 29/144 (20%), Positives = 63/144 (43%)
Query: 1020 DEEKMRLEEQASQVAQRAAEALR-QSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGST 1078
+++ + + Q +++ R+ E M + R +I W ++G G + ++
Sbjct: 2206 EKQTVPTDSQINEMIARSPEEFELYENMDKERMEIDQKKWD-EAGKKGEAKRLSQE--DE 2262
Query: 1079 VGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQFEV 1138
+ S + K +E S G+S + +EL +IR E+ ++R+
Sbjct: 2263 IPSWITKEVELGDDLSFVLNQSIKPGSSKKSLDLENEL--QIRKILESGK---IKRK--T 2315
Query: 1139 ASSSANVARFADTRTSRSSKNASD 1162
A+++A ++ F D SS ++SD
Sbjct: 2316 ANNNAMISEFFDDDDDGSSSSSSD 2339
Score = 44 (20.5 bits), Expect = 1.5e-62, Sum P(5) = 1.5e-62
Identities = 13/82 (15%), Positives = 33/82 (40%)
Query: 243 IQQPGPSNKQNVPDEQEARSNDP--FSASVDRALRMMSEAAQARPSTKLLDPESLPKLDG 300
+QQ P + Q +Q+ P + + E Q+ T+ + + P+ +
Sbjct: 1016 LQQQQPEHLQQQQQQQQEHLQQPENLQPQPQQQSQQQPEQVQSSEQTQSMQAQQQPEQNQ 1075
Query: 301 PTRPFQRLKTPFRMPQSEESEV 322
P + +++ T + Q + ++
Sbjct: 1076 PQQQSEQI-TQQQQSQQDPQQI 1096
Score = 43 (20.2 bits), Expect = 7.0e-63, Sum P(4) = 7.0e-63
Identities = 14/60 (23%), Positives = 28/60 (46%)
Query: 105 EQDGREDEKSAVQASPNDMTLQ-HALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHD 163
E+D ++ EK ++ ND+ + T +R S +K+ LV+ + + K + D
Sbjct: 1431 EEDAKQSEKISIMNITNDVDIDTDGNTTNRDLS-NNSKSPLVRSSNPISNLLNGKDDDDD 1489
Score = 43 (20.2 bits), Expect = 1.5e-62, Sum P(5) = 1.5e-62
Identities = 6/25 (24%), Positives = 18/25 (72%)
Query: 171 KEEHRPKRKSKEAQKPGKDRSKQQK 195
+++H+P+ + ++ Q+ + +S QQ+
Sbjct: 379 QQQHQPQTQQQQQQQQQQQQSPQQQ 403
Score = 43 (20.2 bits), Expect = 1.5e-62, Sum P(5) = 1.5e-62
Identities = 13/92 (14%), Positives = 42/92 (45%)
Query: 106 QDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKF 165
Q + ++ +Q + L ++K ++ Q + ++ +TS I +
Sbjct: 427 QQQPQQQQPQIQQQQQQAAYEAQLKQQQMKHQQQQHLQHQQNMNVTSPNMTSPNIPSTQQ 486
Query: 166 I--QDLVKEEHRPKRKSKEAQKPGKDRSKQQK 195
+ Q L+ ++ + +++ ++ Q+ + + +QQ+
Sbjct: 487 LMQQQLLLQQQQQQQQQQQQQQQQQQQQQQQQ 518
Score = 41 (19.5 bits), Expect = 1.1e-62, Sum P(4) = 1.1e-62
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 88 RRVSTKEDNDI-DDGDSTEQDGREDEKSAVQASPNDMT 124
+ + K+DND D +T DG +D S ++ ++
Sbjct: 1606 KEIQEKKDNDNKDQSKATTIDG-DDNSSNIKVDDKSIS 1642
Score = 40 (19.1 bits), Expect = 1.4e-62, Sum P(4) = 1.4e-62
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 93 KEDNDIDDGDSTEQ 106
K+D+D DD D Q
Sbjct: 1484 KDDDDDDDNDDNNQ 1497
Score = 39 (18.8 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 496 KSSDTDNDGEGSHDSDYEGNLSSRNPKK 523
+ D D D E D D++ + S+ K
Sbjct: 2433 EDDDDDADEEDEEDEDFQRPVRSKKRAK 2460
Score = 39 (18.8 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 491 RKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
+ + K D D +G D D N ++ N
Sbjct: 2372 KNTKEKLKDKDTNGLDDDDDDNNSNNNNNN 2401
Score = 39 (18.8 bits), Expect = 0.00035, Sum P(3) = 0.00035
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 482 HDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKK 523
H +Q+ +++KSS + + G D D + + K+
Sbjct: 2819 HQQSQNPNQTPQKSKSSSSKSSKGGDRDRDRDRDRDRERQKE 2860
Score = 38 (18.4 bits), Expect = 1.5e-51, Sum P(4) = 1.5e-51
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 495 AKSSDTDNDGEGSHDSDYEGNLSSRN 520
+ S++ +N+ +++S+ GN ++ N
Sbjct: 825 SNSNNNNNNNNNNNNSNTSGNNNNNN 850
>SGD|S000002742 [details] [associations]
symbol:SWR1 "Swi2/Snf2-related ATPase structural component of
the SWR1 complex" species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000812 "Swr1 complex"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IGI;IMP;IDA] [GO:0005198 "structural molecule
activity" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000002742 GO:GO:0005524 GO:GO:0006355 GO:GO:0003677
GO:GO:0005198 EMBL:BK006938 GO:GO:0006351 GO:GO:0000812
GO:GO:0004386 GO:GO:0043486 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427
EMBL:U51032 KO:K11681 HOGENOM:HOG000186095 OrthoDB:EOG49S9FK
PIR:S70099 RefSeq:NP_010621.1 ProteinModelPortal:Q05471 SMR:Q05471
DIP:DIP-2845N IntAct:Q05471 MINT:MINT-1165514 STRING:Q05471
PaxDb:Q05471 EnsemblFungi:YDR334W GeneID:851934 KEGG:sce:YDR334W
CYGD:YDR334w OMA:APGFKVL NextBio:970001 Genevestigator:Q05471
GermOnline:YDR334W Uniprot:Q05471
Length = 1514
Score = 355 (130.0 bits), Expect = 2.5e-64, Sum P(4) = 2.5e-64
Identities = 70/178 (39%), Positives = 110/178 (61%)
Query: 747 KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALID 806
K++ +A +L+ KD GHR L+F Q ++LD+LE FL GY Y R+DG T ++ R L +
Sbjct: 1247 KLQKLAILLQQLKDNGHRALIFTQMTKVLDVLEQFLNYHGYLYMRLDGATKIEDRQILTE 1306
Query: 807 EYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866
+N S + +FIL+++ GGLG NLTGA+ VI +D DWNP+ D Q ++R RIGQ +DV +
Sbjct: 1307 RFNTDSRITVFILSSRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQTRDVHI 1366
Query: 867 YRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFFKARNMKDLF--TLNDDGNGG 921
YR ++ TIE + + K L N +++ +F +++DL L ++ +GG
Sbjct: 1367 YRFVSEHTIESNILKKANQKRQLDNVVIQEGDFTTDYFSKLSVRDLLGSELPENASGG 1424
Score = 278 (102.9 bits), Expect = 2.5e-64, Sum P(4) = 2.5e-64
Identities = 69/207 (33%), Positives = 105/207 (50%)
Query: 558 WGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFP----- 612
W Y VLDE H I+N + T R+++TG P+QN L+ELWSL F+ P
Sbjct: 818 WQYMVLDEAHNIKNFRSTRWQALLNFNTQRRLLLTGTPLQNNLAELWSLLYFLMPQTVID 877
Query: 613 GK----LGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADV 668
GK L F+ F P+ + Q + L ++ PYLLRR+KADV
Sbjct: 878 GKKVSGFADLDAFQQWFGRPVDKIIETGQNFGQDKETKKTVAKLHQVLRPYLLRRLKADV 937
Query: 669 NAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL-DGSRNSLYG-IDVMRKICNHPD 726
Q+P K EH+++C L++ QR +Y F++ ++ + L G+ S+ + +RK+CNHP+
Sbjct: 938 EKQMPAKYEHIVYCKLSKRQRFLYDDFMSRAQTKATLASGNFMSIVNCLMQLRKVCNHPN 997
Query: 727 LLERE--------QSCQIPDYGNPERS 745
L E + C DY + ER+
Sbjct: 998 LFEVRPILTSFVLEHCVASDYKDVERT 1024
Score = 175 (66.7 bits), Expect = 2.5e-64, Sum P(4) = 2.5e-64
Identities = 39/104 (37%), Positives = 57/104 (54%)
Query: 394 IPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM-YKP 452
+P + NL YQK G+ WL L+ GI+ DEMGLGKTIQ +S L L + P
Sbjct: 688 VPSLLRGNLRTYQKQGLNWLASLYNNHTNGILADEMGLGKTIQTISLLAYLACEKENWGP 747
Query: 453 SIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAK 496
++V P ++L W+ E +++ P F V + S Q RK++ K
Sbjct: 748 HLIVVPTSVLLNWEMEFKRFAPGFKVLTYYGSPQQ---RKEKRK 788
Score = 58 (25.5 bits), Expect = 3.5e-09, Sum P(3) = 3.5e-09
Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 666 ADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHP 725
ADV A+ P++ E +L + E++ V A LA EVE D S + NH
Sbjct: 1432 ADVAAKDPRQLERLL--AQAEDEDDVKAANLAMREVEIDNDDFDESTEKKAANEEEENHA 1489
Query: 726 DLLEREQSCQIPDY 739
+L E E + + +Y
Sbjct: 1490 ELDEYEGTAHVDEY 1503
Score = 49 (22.3 bits), Expect = 2.5e-64, Sum P(4) = 2.5e-64
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 90 VSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELS 149
V ++ D+D+DD ST D ++E A N A D +L QL ++
Sbjct: 482 VLSESDDDMDDELSTSSD-EDEEVDADVGLENSPASTEATPTDESLNL----IQLKEKYG 536
Query: 150 HF 151
HF
Sbjct: 537 HF 538
>POMBASE|SPCC1620.14c [details] [associations]
symbol:snf22 "ATP-dependent DNA helicase Snf22"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEP] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0003677 "DNA binding" evidence=IC]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISM]
[GO:0005524 "ATP binding" evidence=IC] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005819 "spindle" evidence=IDA] [GO:0006338
"chromatin remodeling" evidence=IGI] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0010972 "negative
regulation of G2/M transition of mitotic cell cycle" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEP] [GO:1900389 "regulation of glucose import
by regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:1900400 "regulation of iron ion import by
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR014978 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00384
SMART:SM00490 SMART:SM00951 PomBase:SPCC1620.14c GO:GO:0005524
GO:GO:0005819 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0045944 GO:GO:0000122 GO:GO:0000790 GO:GO:0016514
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0007131
InterPro:IPR014012 PROSITE:PS51204 GO:GO:0010972
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R EMBL:AB162437
PIR:T41628 RefSeq:NP_588472.2 ProteinModelPortal:O94421
DIP:DIP-48377N STRING:O94421 PRIDE:O94421
EnsemblFungi:SPCC1620.14c.1 GeneID:2538881 KEGG:spo:SPCC1620.14c
NextBio:20800061 GO:GO:1900389 GO:GO:1900400 Uniprot:O94421
Length = 1680
Score = 576 (207.8 bits), Expect = 2.5e-64, Sum P(4) = 2.5e-64
Identities = 135/388 (34%), Positives = 219/388 (56%)
Query: 521 PKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLD-VEWGYAVLDEGHRIRNPNAEI-SL 578
P+ L +++ S +L+TT+E + + LL ++W + ++DEGHRI+N +++ S
Sbjct: 953 PQLRKTLQSQIRSSNFNVLLTTFEYI-IKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTST 1011
Query: 579 VCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANAS 638
+ + +R+I+TG P+QN L ELW+L +FV P + F+ F P G +
Sbjct: 1012 LSTYYHSQYRLILTGTPLQNNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTGGQDKI 1071
Query: 639 PLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS 698
L A L ++ P+L RR+K DV +LP K E V+ C L+ Q +Y+
Sbjct: 1072 GLNEEEALLIIKRLHKVLRPFLFRRLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQMKKH 1131
Query: 699 SEVEQILDGSRNS--LYGID--VM--RKICNHPDLLEREQSCQIPDYGNPE---RSE-KM 748
+ +DG + + G+ VM +KICNHP + E + P N + R+ K
Sbjct: 1132 GML--FVDGEKGKTGIKGLQNTVMQLKKICNHPFIFEDVERAIDPSGTNVDLLWRAAGKF 1189
Query: 749 KVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEY 808
+++ ++L GH+ L+F Q Q++ I+E +L + ++Y R+DG T R +L+ ++
Sbjct: 1190 ELLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQF 1249
Query: 809 NN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVY 867
N+ SDV+IF+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RIGQ ++V +
Sbjct: 1250 NDPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRIL 1309
Query: 868 RLITRGTIEEKVYHRQIYKHFLTNKILK 895
RLIT +IEE + R YK L K+++
Sbjct: 1310 RLITEKSIEENILSRAQYKLDLDGKVIQ 1337
Score = 165 (63.1 bits), Expect = 2.5e-64, Sum P(4) = 2.5e-64
Identities = 32/75 (42%), Positives = 45/75 (60%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G++W+ L+ GI+ DEMGLGKTIQ ++F+ L N P +++ P++
Sbjct: 869 LKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTIAFITYLIEKKNQQGPFLIIVPLS 928
Query: 461 LLRQWKREAEKWYPS 475
L W E EKW PS
Sbjct: 929 TLTNWIMEFEKWAPS 943
Score = 57 (25.1 bits), Expect = 2.5e-64, Sum P(4) = 2.5e-64
Identities = 22/110 (20%), Positives = 50/110 (45%)
Query: 52 KSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDS--TEQDGR 109
+ + + + +EKL LR++ ++ + VD + T+ DI + + +++ +
Sbjct: 702 EKQKTEHAMRQKEKLLTHLRSIMLHRKSIVTKVDKQNKAKTQRCKDIINFHAHLEKEEKK 761
Query: 110 EDEKSA---VQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGIT 156
E+SA +QA D + D+ K + T L+K+ + + +T
Sbjct: 762 RIERSARQRLQALRADDEAAYLQLLDKAKDTRIT--HLLKQTDQYLENLT 809
Score = 47 (21.6 bits), Expect = 2.5e-64, Sum P(4) = 2.5e-64
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 1016 MNAHDEEKMRLEEQASQVAQRAAEA-LRQSRMLRSRDDISVPTWTGKSGT 1064
++A++EE + EEQAS V +EA L + S +D V T+ S +
Sbjct: 1629 LHAYEEEALN-EEQASLVFLENSEAELPLDSGIVSAEDDKVITYEDSSSS 1677
Score = 43 (20.2 bits), Expect = 7.1e-63, Sum P(4) = 7.1e-63
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 168 DLVKEEHRPKRKSKEAQKPGKDRS 191
D +++E+RPK +K+ + K +S
Sbjct: 621 DFLEKENRPKSVNKKILQQDKSKS 644
Score = 40 (19.1 bits), Expect = 1.5e-62, Sum P(4) = 1.5e-62
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 252 QNVPDEQEARSNDPFSASVDRALRMMSEAAQAR 284
Q + ++ N+P A + LRM+ A AR
Sbjct: 27 QVMRNQGATEENNPEFAQISSILRMVQRAHYAR 59
>UNIPROTKB|F1RG74 [details] [associations]
symbol:SRCAP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0043234 "protein complex" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005794
GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478 PRINTS:PR00929
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GeneTree:ENSGT00530000063427 OMA:LGTGNPQ EMBL:FP102572
Ensembl:ENSSSCT00000008537 Uniprot:F1RG74
Length = 3230
Score = 385 (140.6 bits), Expect = 2.7e-64, Sum P(6) = 2.7e-64
Identities = 75/181 (41%), Positives = 117/181 (64%)
Query: 747 KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALID 806
K++ +A +L+ K +GHRVL+F Q +MLD+LE FL G+ Y R+DG T V+QR AL++
Sbjct: 2044 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2103
Query: 807 EYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866
+N +F FIL+T+ GG+G NLTGA+ V+ +D DWNP+ D QA++R RIGQ +DV +
Sbjct: 2104 RFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 2163
Query: 867 YRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFFKARNMKDLFTLNDDGNGGSTET 925
YRLI+ T+EE + + K L + ++ +FK + +++LF + + GS+
Sbjct: 2164 YRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDMPLEEPSGSSVP 2223
Query: 926 S 926
S
Sbjct: 2224 S 2224
Score = 273 (101.2 bits), Expect = 2.7e-64, Sum P(6) = 2.7e-64
Identities = 66/192 (34%), Positives = 101/192 (52%)
Query: 540 ITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNK 599
IT+Y+ + + W Y +LDE I+N ++ + R+++TG P+QN
Sbjct: 729 ITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNS 788
Query: 600 LSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPY 659
L ELWSL F+ P F+ F+ P+T G + R VLR P+
Sbjct: 789 LMELWSLMHFLMPHVFQSHREFKEWFSNPLT-GMIEGSQEYNEGLVKRLHKVLR----PF 843
Query: 660 LLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL-DGSRNSLYGIDV- 717
LLRR+K DV Q+PKK EHV+ C L++ QR +Y F+A + ++ L G S+ I +
Sbjct: 844 LLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGHFMSVINILMQ 903
Query: 718 MRKICNHPDLLE 729
+RK+CNHP+L +
Sbjct: 904 LRKVCNHPNLFD 915
Score = 172 (65.6 bits), Expect = 2.7e-64, Sum P(6) = 2.7e-64
Identities = 34/94 (36%), Positives = 56/94 (59%)
Query: 394 IPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN-MYKP 452
IP + L +YQ +G+ WL ++ ++ GI+ DEMGLGKTIQ +S L L + P
Sbjct: 617 IPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGP 676
Query: 453 SIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQ 486
+++ P +++ W+ E ++W PSF + L + AQ
Sbjct: 677 HLIIVPTSVMLNWEMELKRWCPSFKI-LTYYGAQ 709
Score = 56 (24.8 bits), Expect = 2.7e-64, Sum P(6) = 2.7e-64
Identities = 29/107 (27%), Positives = 42/107 (39%)
Query: 90 VSTKEDNDIDDGDSTEQDGREDEKSAV----QASPNDMTLQHALTADRLKS-----LKKT 140
VS +D ID GD Q+ ED++ + Q ND Q L + L+ L++
Sbjct: 279 VSRMDDEAID-GDFQPQEEEEDDEETIEVEEQQEGNDAETQR-LEIELLRREGELPLEEL 336
Query: 141 KAQLVKELSHFPKGITSKGIEHDKFIQDLVKE-EHRPKRKSKEAQKP 186
L +L P + HD QD +E E P + K P
Sbjct: 337 LRSLPPQLLGGPSSPSRTPSSHDSDTQDGPEEGEEEPSQAMKVKPPP 383
Score = 45 (20.9 bits), Expect = 2.7e-64, Sum P(6) = 2.7e-64
Identities = 17/85 (20%), Positives = 37/85 (43%)
Query: 954 AASANADDAVGDKENN-LEIGSSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNH 1012
+A + ++ V K+ + LE R + +E + E+ L + +G +
Sbjct: 2224 SAPEDEEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNENDGFPAGEGE 2283
Query: 1013 DAIM-NAHDEEKMRLEEQASQVAQR 1036
+A A DEE R E++ + + ++
Sbjct: 2284 EAGRPGAEDEEMSRAEQEIAALVEQ 2308
Score = 43 (20.2 bits), Expect = 5.9e-63, Sum P(6) = 5.9e-63
Identities = 9/53 (16%), Positives = 24/53 (45%)
Query: 85 DHLRRVSTKEDNDIDDGDSTEQDGREDEKSA-VQASPNDMTLQHALTADRLKS 136
+H T ++ ++ +S E + + + A + +D +++ L D +S
Sbjct: 516 EHSEEEETSRSSESEESESEESEESQSQSQADEEEEDDDFGVEYLLARDEERS 568
Score = 42 (19.8 bits), Expect = 5.5e-64, Sum P(6) = 5.5e-64
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 1014 AIMNAHDEEKMRLEEQAS--QVAQRA 1037
A+ A DEE +R QA QVA+ A
Sbjct: 2244 ALCRAEDEEDIRAATQAKAEQVAELA 2269
Score = 39 (18.8 bits), Expect = 1.5e-62, Sum P(6) = 1.5e-62
Identities = 14/73 (19%), Positives = 35/73 (47%)
Query: 53 SESIDPSS-TSQEKLYNKLRA--VEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGR 109
S++ P S +S+E+ +++ A E E A + S+ + + ++ E+D
Sbjct: 458 SDASAPGSGSSEEEEEDEVEADSSESEPEGAAEAEEAPHEDSSSQSDSAEEQSEDEEDEH 517
Query: 110 EDEKSAVQASPND 122
+E+ ++S ++
Sbjct: 518 SEEEETSRSSESE 530
Score = 38 (18.4 bits), Expect = 2.7e-64, Sum P(6) = 2.7e-64
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 1065 AGAPSSVRKKFGSTVGSQLIKPLEGSSSNKTGE 1097
A P+S +K V +++ P SS+ T E
Sbjct: 2681 AQTPTSTPEKPQELVSAEVAAPSTSSSATSTPE 2713
>FB|FBgn0020306 [details] [associations]
symbol:dom "domino" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=IEA;NAS] [GO:0008283 "cell
proliferation" evidence=NAS] [GO:0016458 "gene silencing"
evidence=IGI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0002165 "instar larval or pupal development"
evidence=IMP] [GO:0006325 "chromatin organization" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC;IDA] [GO:0035207 "negative regulation of hemocyte
proliferation" evidence=TAS] [GO:0030097 "hemopoiesis"
evidence=TAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000381 "regulation of alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0000123 "histone
acetyltransferase complex" evidence=IPI] [GO:0045747 "positive
regulation of Notch signaling pathway" evidence=IGI] [GO:0035222
"wing disc pattern formation" evidence=IGI] [GO:0010629 "negative
regulation of gene expression" evidence=IMP] [GO:0005515 "protein
binding" evidence=IPI] [GO:0070983 "dendrite guidance"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:2000637
"positive regulation of gene silencing by miRNA" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 EMBL:AE013599 GO:GO:0005524
GO:GO:0006355 GO:GO:0003677 GO:GO:0035222 GO:GO:0048477
GO:GO:0016573 GO:GO:0045747 GO:GO:0006351 GO:GO:0007049
GO:GO:0035267 GO:GO:0004386 GO:GO:0030097 GO:GO:0043486
GO:GO:2000637 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016458 InterPro:IPR017877
PROSITE:PS50090 GO:GO:0070983 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 GO:GO:0000381 EMBL:AF076776 EMBL:AF254373
EMBL:AY058653 RefSeq:NP_524833.2 RefSeq:NP_788424.1 UniGene:Dm.7802
ProteinModelPortal:Q9NDJ2 SMR:Q9NDJ2 IntAct:Q9NDJ2 STRING:Q9NDJ2
PaxDb:Q9NDJ2 EnsemblMetazoa:FBtr0071603 GeneID:45655
KEGG:dme:Dmel_CG9696 UCSC:CG9696-RA CTD:45655 FlyBase:FBgn0020306
GeneTree:ENSGT00530000063427 InParanoid:Q9NDJ2 KO:K11320
OMA:TENDASA OrthoDB:EOG4C5B08 PhylomeDB:Q9NDJ2 GenomeRNAi:45655
NextBio:838265 Bgee:Q9NDJ2 GO:GO:0002165 GO:GO:0035207
Uniprot:Q9NDJ2
Length = 3198
Score = 382 (139.5 bits), Expect = 3.0e-64, Sum P(5) = 3.0e-64
Identities = 74/179 (41%), Positives = 115/179 (64%)
Query: 747 KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALID 806
K++ + ++L+ K GHRVL+F Q +MLD+LE+FL G+ Y R+DG T V+QR L++
Sbjct: 1659 KLQTMDRLLRQLKVNGHRVLIFTQMTKMLDVLEAFLNYHGHIYLRLDGSTRVEQRQILME 1718
Query: 807 EYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866
+N +F FIL+T+ GG+G NLTGA+ VI +D DWNP+ D QA++R RIGQ +DV +
Sbjct: 1719 RFNGDKRIFCFILSTRSGGVGINLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 1778
Query: 867 YRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFFKARNMKDLFTLNDDGNGGSTE 924
YRL++ TIE + + K L++ ++ +FK+ +KDLFT+ S++
Sbjct: 1779 YRLVSERTIEVNILKKANQKRMLSDMAIEGGNFTTTYFKSSTIKDLFTMEQSEQDESSQ 1837
Score = 273 (101.2 bits), Expect = 3.0e-64, Sum P(5) = 3.0e-64
Identities = 65/195 (33%), Positives = 107/195 (54%)
Query: 540 ITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNK 599
IT+Y+ + + +W Y +LDE I+N ++ + T R+++TG P+QN
Sbjct: 1018 ITSYKLVVQDQQSFRRKKWKYLILDEAQNIKNFKSQRWQLLLNFSTERRLLLTGTPLQND 1077
Query: 600 LSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLR--DLIM 657
L ELWSL F+ P F+ F+ P+T G ++ + Y ++ R +I
Sbjct: 1078 LMELWSLMHFLMPYVFSSHREFKEWFSNPMT--GM-----IEGNMEYNETLITRLHKVIR 1130
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDV 717
P+LLRR+K +V Q+PKK EHV+ C L+ QR +Y F++ ++ + L + N L I+V
Sbjct: 1131 PFLLRRLKKEVEKQMPKKYEHVITCRLSNRQRYLYEDFMSRAKTRETLQ-TGNLLSVINV 1189
Query: 718 M---RKICNHPDLLE 729
+ RK+CNHP++ E
Sbjct: 1190 LMQLRKVCNHPNMFE 1204
Score = 169 (64.5 bits), Expect = 3.0e-64, Sum P(5) = 3.0e-64
Identities = 39/136 (28%), Positives = 72/136 (52%)
Query: 394 IPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN-MYKP 452
+P + ++L +YQ +G+ WL ++ ++ GI+ DEMGLGKTIQ ++ L L + + P
Sbjct: 906 VPFLLKHSLREYQHIGLDWLVTMNERKLNGILADEMGLGKTIQTIALLAHLACAKGNWGP 965
Query: 453 SIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDY 512
++V P +++ W+ E +KW P F + + S ++ ++ + + S+
Sbjct: 966 HLIVVPSSVMLNWEMEFKKWCPGFKILTYYGSQKERKLKRVGWTKPNAFHVCITSYKLVV 1025
Query: 513 EGNLSSRNPKKWDLLI 528
+ S R KKW LI
Sbjct: 1026 QDQQSFRR-KKWKYLI 1040
Score = 58 (25.5 bits), Expect = 3.0e-64, Sum P(5) = 3.0e-64
Identities = 49/210 (23%), Positives = 80/210 (38%)
Query: 64 EKLYNKLRAVEFEIGAVAST--VDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPN 121
EK +L VE +VA T ++ R S K ++D D E +DE++ +A +
Sbjct: 624 EKFSQQL--VEGMNKSVADTPSLNSSRLTSPKRESD--DDFRPESGSEDDEETIAKAEED 679
Query: 122 DMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSK 181
++ +TA K+++ L+ P G DK L+KEE K+
Sbjct: 680 AADVKEEVTA----LAKESEMDFDDFLNDLPPGYLEN---RDK----LMKEEQSSAIKT- 727
Query: 182 EAQKPGKDRSKQQKTVSVXXXXXXXXXXXXXXXGFVETKRDELVRKGILTPFHKLKGFER 241
E D + K S + + DEL L+ L + +
Sbjct: 728 ETPDDSDDSEFEAKEASDDDENTISKQEEAEQEIDHKKEIDELEADNDLSVEQLLAKY-K 786
Query: 242 CIQQPGPSNKQNVPDEQEARSNDPFSASVD 271
Q P P ++ P + E S+D S +VD
Sbjct: 787 SEQPPSPKRRKLAPRDPELDSDDD-STAVD 815
Score = 50 (22.7 bits), Expect = 2.0e-63, Sum P(5) = 2.0e-63
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 88 RRVSTKEDNDID-DGDSTEQDGREDEKSAVQASPNDMT 124
RR D ++D D DST D E+ + A D++
Sbjct: 795 RRKLAPRDPELDSDDDSTAVDSTEESEDAATEDEEDLS 832
Score = 45 (20.9 bits), Expect = 6.7e-63, Sum P(5) = 6.7e-63
Identities = 13/66 (19%), Positives = 22/66 (33%)
Query: 297 KLDGPTRPFQRLKTPFRMPQSEESEVEXXXXXXXXXXXXXXXXXXXXXIAREDTRLEENE 356
K + P P +R P R P+ + + + DT +EE +
Sbjct: 786 KSEQPPSPKRRKLAP-RDPELDSDDDSTAVDSTEESEDAATEDEEDLSTVKTDTDMEEQD 844
Query: 357 DSRDSL 362
+ D L
Sbjct: 845 EQEDGL 850
Score = 45 (20.9 bits), Expect = 1.5e-27, Sum P(4) = 1.5e-27
Identities = 17/70 (24%), Positives = 32/70 (45%)
Query: 118 ASPNDMTLQHALTA--DRLKSLKKTKAQLV--------KELSHFPKGITSKGIEHDKFIQ 167
A N +L H L + +R LK A V + + + ++S +H++ I+
Sbjct: 1563 AHRNGWSLNHLLKSFEERCADLKPVFANFVIYVPSVCAPRIRRYVQNLSSTHWQHEQRIE 1622
Query: 168 DLVKEEHRPK 177
++V + RPK
Sbjct: 1623 NIVDQALRPK 1632
Score = 42 (19.8 bits), Expect = 4.6e-28, Sum P(4) = 4.6e-28
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 511 DYEGNLSSRNPKKWDLLINRVLRSESGLLIT 541
D N+ + ++W LL+N +E LL+T
Sbjct: 1042 DEAQNIKNFKSQRWQLLLN--FSTERRLLLT 1070
Score = 39 (18.8 bits), Expect = 3.0e-64, Sum P(5) = 3.0e-64
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 1076 GSTVGSQLIKPLEGSSSNKT-GEFNSFG---AGASAGK 1109
G + QL+K + G+SS+ T G+ A AS G+
Sbjct: 2464 GQSNTQQLVKTIVGTSSSLTAGQLQQLAQQSAVASGGQ 2501
Score = 39 (18.8 bits), Expect = 1.5e-28, Sum P(5) = 1.5e-28
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 1037 AAEALRQSRMLRSRDDISVPT 1057
A L S++L +R I+ PT
Sbjct: 1375 ALSVLSNSKLLGARSQINAPT 1395
Score = 39 (18.8 bits), Expect = 1.5e-28, Sum P(5) = 1.5e-28
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 1149 ADTRTSRSSKNASDVQPEILIR 1170
A T TSR++ AS + LIR
Sbjct: 1435 ASTTTSRTTVTASTTSGQQLIR 1456
Score = 39 (18.8 bits), Expect = 9.4e-28, Sum P(4) = 9.4e-28
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 455 VVCPVTLLRQWKREAEKWYP 474
V+ P LLR+ K+E EK P
Sbjct: 1128 VIRPF-LLRRLKKEVEKQMP 1146
Score = 38 (18.4 bits), Expect = 3.6e-62, Sum P(5) = 3.6e-62
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 295 LPKLDGPTRP 304
LPKL P+RP
Sbjct: 507 LPKLQEPSRP 516
Score = 38 (18.4 bits), Expect = 3.6e-62, Sum P(5) = 3.6e-62
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 81 ASTVDHLRRVSTKEDNDIDDGDSTEQDG 108
A+T D + K D D+++ D E DG
Sbjct: 823 AATEDEEDLSTVKTDTDMEEQDEQE-DG 849
Score = 38 (18.4 bits), Expect = 1.3e-25, Sum P(4) = 1.3e-25
Identities = 17/87 (19%), Positives = 35/87 (40%)
Query: 114 SAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELS-HFPKGITSKGIEHDKFIQDLVKE 172
S AS + T + +TA + + +VK+L+ H + + I + K + E
Sbjct: 1429 SKTTASASTTTSRTTVTASTTSGQQLIRDPIVKDLATHVKSTVQKQSIANGKTEPEEETE 1488
Query: 173 EHRPKRKSKEAQKPGKDRSKQQKTVSV 199
P + + Q + R K +++
Sbjct: 1489 AEDPYKVQELIQMRKEQRLAALKRMAM 1515
Score = 38 (18.4 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 1204 FKNLLKEIATLQKDPSGSRWVLKLNF 1229
+K L+ + A K+ RW L LNF
Sbjct: 1036 WKYLILDEAQNIKNFKSQRWQLLLNF 1061
>UNIPROTKB|F1P5M3 [details] [associations]
symbol:RAD54B "DNA repair and recombination protein RAD54B"
species:9031 "Gallus gallus" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0015616 IPI:IPI00590839
OMA:VCKRHGY EMBL:AADN02024876 EMBL:AADN02024875
Ensembl:ENSGALT00000025712 Uniprot:F1P5M3
Length = 920
Score = 375 (137.1 bits), Expect = 3.3e-64, Sum P(3) = 3.3e-64
Identities = 72/175 (41%), Positives = 112/175 (64%)
Query: 748 MKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDE 807
+K++A + ++ + V+L + Q L++L+ GY Y R+DG TPV QR ++D
Sbjct: 655 VKLLAAIRELSSSERQVVVLVSNYTQTLNVLQETCKCYGYSYTRLDGNTPVSQRQQIVDS 714
Query: 808 YNNS-SDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866
+N+ S FIF+L++K GG+G NL GA+ +I++D DWNP+TD+QA R WR GQK V +
Sbjct: 715 FNSKFSPAFIFLLSSKAGGVGLNLVGASHLILYDIDWNPATDIQAMARVWRDGQKCTVHI 774
Query: 867 YRLITRGTIEEKVYHRQIYKHFLTNKI--LKNPQQRRFFKARNMKDLFTLNDDGN 919
YRL+T GTIEEK+Y RQI K L+ + L + F +++LFTL+++ +
Sbjct: 775 YRLLTTGTIEEKIYQRQISKQDLSGAVVDLSKTSEHIHFSVEELRNLFTLHENSS 829
Score = 280 (103.6 bits), Expect = 3.3e-64, Sum P(3) = 3.3e-64
Identities = 67/205 (32%), Positives = 108/205 (52%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
++I +YE L +++ +E+ + DEGHR++N + + + L RII+TG PIQ
Sbjct: 412 VMIISYEMLLRSLDQIQAIEFNLLICDEGHRLKNSSIKTTTALTNLSCERRIILTGTPIQ 471
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N L E ++L +FV PG LG L + + PI +A+ + + A L L
Sbjct: 472 NDLQEFYALIEFVNPGVLGSLSTYRKIYEEPIVRSREPSATKEEKDLGEKRAAELTRLTG 531
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGS-RNS--LYG 714
++LRR + +N LP K E+++FC T Q +Y+ L+S + L G NS L
Sbjct: 532 LFILRRTQEVINKFLPPKKENIIFCQPTALQLELYQKLLSSRVISSCLQGRLENSPHLIC 591
Query: 715 IDVMRKICNHPDLLER--EQSCQIP 737
I ++K+CNHP LL + ++ C P
Sbjct: 592 IGALKKLCNHPCLLFKALKEKCCDP 616
Score = 140 (54.3 bits), Expect = 3.3e-64, Sum P(3) = 3.3e-64
Identities = 34/94 (36%), Positives = 56/94 (59%)
Query: 398 IFNNLFDYQKVGVQWLWE----LHCQ-RAGGIIGDEMGLGKTIQVLSFLGALHFSNMY-- 450
I NNL +Q+ G+ +L+E + R G I+ DEMGLGKT+Q +S + L +Y
Sbjct: 299 IANNLRPHQREGIVFLYECVMGMRVSGRFGAILADEMGLGKTLQCISLVWTLLRQGVYGC 358
Query: 451 KP----SIVVCPVTLLRQWKREAEKWYPSFHVEL 480
KP +++V P +L++ WK+E +KW S +++
Sbjct: 359 KPVLKRALIVTPGSLVKNWKKEFQKWLGSERIKV 392
Score = 40 (19.1 bits), Expect = 2.0e-29, Sum P(2) = 2.0e-29
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 55 SIDPSSTSQEKLYNKLRAVE 74
S +PS+T +EK + RA E
Sbjct: 506 SREPSATKEEKDLGEKRAAE 525
>UNIPROTKB|F1NBD4 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 EMBL:AADN02012644 IPI:IPI00818904
Ensembl:ENSGALT00000016863 ArrayExpress:F1NBD4 Uniprot:F1NBD4
Length = 733
Score = 372 (136.0 bits), Expect = 4.0e-64, Sum P(3) = 4.0e-64
Identities = 75/178 (42%), Positives = 113/178 (63%)
Query: 742 PERSEKMKVVAQVLKVWKDQGH-RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQ 800
P+ S KM V+ +L V K + +V+L + Q LD+ E Y Y R+DG +K+
Sbjct: 481 PQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKK 540
Query: 801 RMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIG 859
R +++ +N+ SS FIF+L++K GG G NL GANR+++FDPDWNP+ D QA R WR G
Sbjct: 541 RAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDG 600
Query: 860 QKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLND 916
QK+ +YRL++ GTIEEK++ RQ +K L++ ++ Q R F +K+LF+LN+
Sbjct: 601 QKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDEEQDVERHFSLGELKELFSLNE 658
Score = 290 (107.1 bits), Expect = 4.0e-64, Sum P(3) = 4.0e-64
Identities = 73/202 (36%), Positives = 105/202 (51%)
Query: 530 RVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRI 589
R LR S +LI +YE RL E L G + DEGHR++N + L T R+
Sbjct: 251 RGLRVPSPILIISYETFRLHAEALQKGSVGLVICDEGHRLKNSENQTYQALNSLNTPRRV 310
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
+++G PIQN L E +SL FV G LG F+ F +PI G A+AS +
Sbjct: 311 LISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKRHFELPILKGRDADASEAERQKGEERL 370
Query: 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSE-VEQILDGS 708
L ++ L+RR ++ LP K E V+ C LT Q +Y+ FL ++ VE++ +G
Sbjct: 371 KELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQAELYKNFLKQAKPVEELKEGK 430
Query: 709 RN--SLYGIDVMRKICNHPDLL 728
N SL I ++K+CNHP L+
Sbjct: 431 INVSSLSSITSLKKLCNHPALI 452
Score = 125 (49.1 bits), Expect = 4.0e-64, Sum P(3) = 4.0e-64
Identities = 32/78 (41%), Positives = 44/78 (56%)
Query: 405 YQKVGVQWLWELHCQRA-----GGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSI---- 454
+Q+ GV++LW+ R G I+ DEMGLGKT+Q ++ + L S KP I
Sbjct: 145 HQREGVKFLWDCVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPDCKPEIEKAM 204
Query: 455 VVCPVTLLRQWKREAEKW 472
VV P +L+R W E EKW
Sbjct: 205 VVSPSSLVRNWYNEVEKW 222
>UNIPROTKB|O12944 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000733 "DNA
strand renaturation" evidence=ISS] [GO:0036310 "annealing helicase
activity" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0036310
HOGENOM:HOG000204521 HOVERGEN:HBG058654 EMBL:U92461 IPI:IPI00588266
UniGene:Gga.3308 ProteinModelPortal:O12944 SMR:O12944 STRING:O12944
InParanoid:O12944 OrthoDB:EOG4D7Z53 Uniprot:O12944
Length = 733
Score = 372 (136.0 bits), Expect = 4.0e-64, Sum P(3) = 4.0e-64
Identities = 75/178 (42%), Positives = 113/178 (63%)
Query: 742 PERSEKMKVVAQVLKVWKDQGH-RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQ 800
P+ S KM V+ +L V K + +V+L + Q LD+ E Y Y R+DG +K+
Sbjct: 481 PQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKK 540
Query: 801 RMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIG 859
R +++ +N+ SS FIF+L++K GG G NL GANR+++FDPDWNP+ D QA R WR G
Sbjct: 541 RAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDG 600
Query: 860 QKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLND 916
QK+ +YRL++ GTIEEK++ RQ +K L++ ++ Q R F +K+LF+LN+
Sbjct: 601 QKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDEEQDVERHFSLGELKELFSLNE 658
Score = 290 (107.1 bits), Expect = 4.0e-64, Sum P(3) = 4.0e-64
Identities = 73/202 (36%), Positives = 105/202 (51%)
Query: 530 RVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRI 589
R LR S +LI +YE RL E L G + DEGHR++N + L T R+
Sbjct: 251 RGLRVPSPILIISYETFRLHAEALQKGSVGLVICDEGHRLKNSENQTYQALNSLNTPRRV 310
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
+++G PIQN L E +SL FV G LG F+ F +PI G A+AS +
Sbjct: 311 LISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKRHFELPILKGRDADASEAERQKGEERL 370
Query: 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSE-VEQILDGS 708
L ++ L+RR ++ LP K E V+ C LT Q +Y+ FL ++ VE++ +G
Sbjct: 371 KELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQAELYKNFLKQAKPVEELKEGK 430
Query: 709 RN--SLYGIDVMRKICNHPDLL 728
N SL I ++K+CNHP L+
Sbjct: 431 INVSSLSSITSLKKLCNHPALI 452
Score = 125 (49.1 bits), Expect = 4.0e-64, Sum P(3) = 4.0e-64
Identities = 32/78 (41%), Positives = 44/78 (56%)
Query: 405 YQKVGVQWLWELHCQRA-----GGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSI---- 454
+Q+ GV++LW+ R G I+ DEMGLGKT+Q ++ + L S KP I
Sbjct: 145 HQREGVKFLWDCVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPDCKPEIEKAM 204
Query: 455 VVCPVTLLRQWKREAEKW 472
VV P +L+R W E EKW
Sbjct: 205 VVSPSSLVRNWYNEVEKW 222
>UNIPROTKB|F1NX31 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0036310 "annealing helicase activity" evidence=IEA] [GO:0042493
"response to drug" evidence=IEA] [GO:0051276 "chromosome
organization" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0042493
GO:GO:0003677 GO:GO:0010212 GO:GO:0000724 GO:GO:0004386
GO:GO:0051276 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 IPI:IPI00588266 OMA:TYQALMG
EMBL:AADN02012644 Ensembl:ENSGALT00000038354 ArrayExpress:F1NX31
Uniprot:F1NX31
Length = 742
Score = 372 (136.0 bits), Expect = 4.5e-64, Sum P(3) = 4.5e-64
Identities = 75/178 (42%), Positives = 113/178 (63%)
Query: 742 PERSEKMKVVAQVLKVWKDQGH-RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQ 800
P+ S KM V+ +L V K + +V+L + Q LD+ E Y Y R+DG +K+
Sbjct: 490 PQLSGKMLVLDYILAVTKSTSNDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKK 549
Query: 801 RMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIG 859
R +++ +N+ SS FIF+L++K GG G NL GANR+++FDPDWNP+ D QA R WR G
Sbjct: 550 RAKVVERFNSPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDG 609
Query: 860 QKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLND 916
QK+ +YRL++ GTIEEK++ RQ +K L++ ++ Q R F +K+LF+LN+
Sbjct: 610 QKKTCYIYRLLSTGTIEEKIFQRQTHKKALSSCVVDEEQDVERHFSLGELKELFSLNE 667
Score = 290 (107.1 bits), Expect = 4.5e-64, Sum P(3) = 4.5e-64
Identities = 73/202 (36%), Positives = 105/202 (51%)
Query: 530 RVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRI 589
R LR S +LI +YE RL E L G + DEGHR++N + L T R+
Sbjct: 260 RGLRVPSPILIISYETFRLHAEALQKGSVGLVICDEGHRLKNSENQTYQALNSLNTPRRV 319
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
+++G PIQN L E +SL FV G LG F+ F +PI G A+AS +
Sbjct: 320 LISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKRHFELPILKGRDADASEAERQKGEERL 379
Query: 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSE-VEQILDGS 708
L ++ L+RR ++ LP K E V+ C LT Q +Y+ FL ++ VE++ +G
Sbjct: 380 KELISIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQAELYKNFLKQAKPVEELKEGK 439
Query: 709 RN--SLYGIDVMRKICNHPDLL 728
N SL I ++K+CNHP L+
Sbjct: 440 INVSSLSSITSLKKLCNHPALI 461
Score = 125 (49.1 bits), Expect = 4.5e-64, Sum P(3) = 4.5e-64
Identities = 32/78 (41%), Positives = 44/78 (56%)
Query: 405 YQKVGVQWLWELHCQRA-----GGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSI---- 454
+Q+ GV++LW+ R G I+ DEMGLGKT+Q ++ + L S KP I
Sbjct: 154 HQREGVKFLWDCVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPDCKPEIEKAM 213
Query: 455 VVCPVTLLRQWKREAEKW 472
VV P +L+R W E EKW
Sbjct: 214 VVSPSSLVRNWYNEVEKW 231
>UNIPROTKB|I3LQZ8 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000025402
Uniprot:I3LQZ8
Length = 1709
Score = 566 (204.3 bits), Expect = 4.9e-64, Sum P(2) = 4.9e-64
Identities = 136/397 (34%), Positives = 225/397 (56%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEKLL-DVEWGYAVLDEGHRI 569
Y G+L SRN ++++ + ++ R + LITTYE L L + +L + W + +DE HR+
Sbjct: 553 YIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEIL-LKDKTVLGSINWAFLGVDEAHRL 611
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629
+N ++ + ++ HR+++TG P+QN L ELWSL F+ P K FE +
Sbjct: 612 KNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-- 669
Query: 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQR 689
G N Y+ L ++ P+LLRR+K DV LP K E +L ++ Q+
Sbjct: 670 ---GRENG--------YQS---LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQK 715
Query: 690 AVYRAFLASSEVEQILDGSRNSLYG-IDV---MRKICNH------PDLLEREQSCQIPDY 739
Y+ ++ + + + G+R S G +++ ++K CNH P+ ERE +I
Sbjct: 716 QYYK-WILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEIL-L 773
Query: 740 GNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
S K+ ++ ++L +++G+RVL+F+Q +MLDIL +L Y ++R+DG +
Sbjct: 774 SLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 833
Query: 800 QRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
R +D +N + S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA RI
Sbjct: 834 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 893
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
GQK+ V +YRL+T+GT+EE++ R K L + +++
Sbjct: 894 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQ 930
Score = 181 (68.8 bits), Expect = 4.9e-64, Sum P(2) = 4.9e-64
Identities = 37/79 (46%), Positives = 48/79 (60%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGII-GDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPV 459
L DYQ G+ WL C R+ +I DEMGLGKTIQ +SFL L H +Y P ++V P+
Sbjct: 472 LRDYQLEGLNWLAHSWCNRSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPL 531
Query: 460 TLLRQWKREAEKWYPSFHV 478
+ L W+RE E W P +V
Sbjct: 532 STLTSWQREFEIWAPEINV 550
Score = 51 (23.0 bits), Expect = 5.5e-09, Sum P(2) = 5.5e-09
Identities = 31/143 (21%), Positives = 63/143 (44%)
Query: 1020 DEEKMRLEEQASQVAQRAAEALRQS--RMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGS 1077
D EK L + Q+ + AL++ + + +R+ ++ T + T+G + V +
Sbjct: 693 DVEKS-LPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGT-RGSTSGFLNIVMELKKC 750
Query: 1078 TVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIR--GNQENAVGAGLERQ 1135
LIKP E + + G+ S+GK++ +LL R+R GN+ + + + R
Sbjct: 751 CNHCYLIKPPE-ENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRV-LIFSQMVRM 808
Query: 1136 FEVASSSANVARFADTRTSRSSK 1158
++ + + + R S K
Sbjct: 809 LDILAEYLTIKHYPFQRLDGSIK 831
Score = 45 (20.9 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 474 PSFHVELLHDSAQDLGFRKKRAKSSDTDN-DGEGSHDSDYEGNLSSRNPK 522
PS E+ D + +KK+ K + +N + + S D EG+ + K
Sbjct: 1362 PSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKSK 1411
Score = 42 (19.8 bits), Expect = 2.1e-49, Sum P(2) = 2.1e-49
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 489 GFRKKRAKSSDTDNDGE 505
G RKK+ S D D D E
Sbjct: 204 GKRKKQDSSDDDDEDDE 220
Score = 38 (18.4 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 493 KRAKSSDTDNDGEGSHDS 510
K+A+++D+D+D E +
Sbjct: 1067 KKAQTNDSDSDTESKRQA 1084
Score = 38 (18.4 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 539 LITTYEQLRLLGEKLLDVE 557
LI T +L+L +K+L VE
Sbjct: 1272 LIKTDPELKLTDKKILPVE 1290
>WB|WBGene00007027 [details] [associations]
symbol:ssl-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0002119
GO:GO:0003677 GO:GO:0040011 GO:GO:0016568 GO:GO:0040035
GO:GO:0004386 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 PROSITE:PS51204 GeneTree:ENSGT00530000063427 KO:K11320
EMBL:AL132904 EMBL:AY551965 RefSeq:NP_001255179.1
RefSeq:NP_001255180.1 RefSeq:NP_001255181.1 RefSeq:NP_001255182.1
UniGene:Cel.203 ProteinModelPortal:Q9NEL2 SMR:Q9NEL2
MINT:MINT-3384018 PaxDb:Q9NEL2 EnsemblMetazoa:Y111B2A.22a
GeneID:190954 KEGG:cel:CELE_Y111B2A.22 UCSC:Y111B2A.22 CTD:190954
WormBase:Y111B2A.22a WormBase:Y111B2A.22b WormBase:Y111B2A.22c
WormBase:Y111B2A.22d InParanoid:Q9NEL2 OMA:HLACSES NextBio:947488
ArrayExpress:Q9NEL2 Uniprot:Q9NEL2
Length = 2395
Score = 376 (137.4 bits), Expect = 6.7e-64, Sum P(4) = 6.7e-64
Identities = 90/243 (37%), Positives = 138/243 (56%)
Query: 747 KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALID 806
K++ +A +L+ HR L+F Q +MLD+L++FL GY+Y R+DG T V+QR A+++
Sbjct: 1189 KLQTLAVLLRQLYLYKHRCLIFTQMSKMLDVLQTFLSHHGYQYFRLDGTTGVEQRQAMME 1248
Query: 807 EYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866
+N VF FIL+T+ GG+G NLTGA+ VI +D DWNP+ D QA++R RIGQ ++V++
Sbjct: 1249 RFNADPKVFCFILSTRSGGVGVNLTGADTVIFYDSDWNPTMDAQAQDRCHRIGQTRNVSI 1308
Query: 867 YRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFFK-ARNMKDLFTLNDDGNGGSTE 924
YRLI+ TIEE + + K L + FFK + +++DLF D N T
Sbjct: 1309 YRLISERTIEENILRKATQKRRLGELAIDEAGFTPEFFKQSDSIRDLF---DGENVEVTA 1365
Query: 925 TSNIFSQLSE---DVNVVGXXXXXXXXXXXXXAASANADDAVGDKENNLEIGSSRRKGKE 981
+++ + +SE +V + A AN D+A D E +L S +G E
Sbjct: 1366 VADVATTMSEKEMEVAMAKCEDEADVNAAKIAVAEANVDNAEFD-EKSLP-PMSNLQGDE 1423
Query: 982 KVD 984
+ D
Sbjct: 1424 EAD 1426
Score = 270 (100.1 bits), Expect = 6.7e-64, Sum P(4) = 6.7e-64
Identities = 63/174 (36%), Positives = 95/174 (54%)
Query: 558 WGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGV 617
W Y +LDE I+N ++ ++ R+++TG P+QN L ELWSL F+ P
Sbjct: 680 WQYLILDEAQNIKNWKSQRWQALLNVRARRRLLLTGTPLQNSLMELWSLMHFLMPTIFSS 739
Query: 618 LPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTE 677
F+ F+ P+T G R VLR P++LRR+K +V QLP+KTE
Sbjct: 740 HDDFKDWFSNPLT-GMMEGNMEFNAPLIGRLHKVLR----PFILRRLKKEVEKQLPEKTE 794
Query: 678 HVLFCSLTEEQRAVYRAFLAS-SEVEQILDGSRNSLYGIDV-MRKICNHPDLLE 729
H++ CSL++ QR +Y F++ S E + G+ S+ I + +RK CNHP+L E
Sbjct: 795 HIVNCSLSKRQRYLYDDFMSRRSTKENLKSGNMMSVLNIVMQLRKCCNHPNLFE 848
Score = 175 (66.7 bits), Expect = 6.7e-64, Sum P(4) = 6.7e-64
Identities = 34/101 (33%), Positives = 60/101 (59%)
Query: 394 IPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS-NMYKP 452
+P I L +YQ VG+ W+ L+ + GI+ DEMGLGKTIQ +S L + S +++ P
Sbjct: 550 VPFLIRGQLREYQMVGLDWMVTLYEKNLNGILADEMGLGKTIQTISLLAHMACSESIWGP 609
Query: 453 SIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKK 493
++V P +++ W+ E +KW P+ + +A++ ++K
Sbjct: 610 HLIVVPTSVILNWEMEFKKWCPALKILTYFGTAKERAEKRK 650
Score = 42 (19.8 bits), Expect = 2.2e-26, Sum P(4) = 2.2e-26
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAE-ISLVCKQLQTVHRIIMTGA 594
+L+T +R +KL+ + G V E H + A+ I V Q+Q V +II+ G+
Sbjct: 82 ILLTENRSIR---DKLV-LSSG-PVRQEDHEEQIARAQRIQPVVDQIQRVEQIILNGS 134
Score = 41 (19.5 bits), Expect = 6.7e-64, Sum P(4) = 6.7e-64
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 1035 QRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRK 1073
Q+ + Q + +RS + V G G G P +R+
Sbjct: 2265 QQRINVMVQPQQMRSNNGGGVGGQGGLQGGPGGPQGIRR 2303
Score = 40 (19.1 bits), Expect = 4.8e-40, Sum P(4) = 4.8e-40
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 653 RDLIMPYLLRRMKADVNAQL 672
R ++ P+++ +++ DV A+L
Sbjct: 850 RPVVAPFVVEKLQLDVPARL 869
Score = 39 (18.8 bits), Expect = 7.7e-06, Sum P(3) = 7.7e-06
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 752 AQVLKVWKDQGHRVLLFAQTQQML 775
AQ +K WK Q + LL + ++ L
Sbjct: 688 AQNIKNWKSQRWQALLNVRARRRL 711
>UNIPROTKB|I3LRQ2 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:CT954235 EMBL:CU466964
Ensembl:ENSSSCT00000027293 Uniprot:I3LRQ2
Length = 1051
Score = 566 (204.3 bits), Expect = 6.8e-64, Sum P(3) = 6.8e-64
Identities = 136/397 (34%), Positives = 225/397 (56%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEKLL-DVEWGYAVLDEGHRI 569
Y G+L SRN ++++ + ++ R + LITTYE L L + +L + W + +DE HR+
Sbjct: 566 YIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEIL-LKDKTVLGSINWAFLGVDEAHRL 624
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629
+N ++ + ++ HR+++TG P+QN L ELWSL F+ P K FE +
Sbjct: 625 KNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-- 682
Query: 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQR 689
G N Y+ L ++ P+LLRR+K DV LP K E +L ++ Q+
Sbjct: 683 ---GRENG--------YQS---LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQK 728
Query: 690 AVYRAFLASSEVEQILDGSRNSLYG-IDV---MRKICNH------PDLLEREQSCQIPDY 739
Y+ ++ + + + G+R S G +++ ++K CNH P+ ERE +I
Sbjct: 729 QYYK-WILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEIL-L 786
Query: 740 GNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
S K+ ++ ++L +++G+RVL+F+Q +MLDIL +L Y ++R+DG +
Sbjct: 787 SLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 846
Query: 800 QRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
R +D +N + S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA RI
Sbjct: 847 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 906
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
GQK+ V +YRL+T+GT+EE++ R K L + +++
Sbjct: 907 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQ 943
Score = 178 (67.7 bits), Expect = 6.8e-64, Sum P(3) = 6.8e-64
Identities = 36/78 (46%), Positives = 47/78 (60%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL C+ I+ DEMGLGKTIQ +SFL L H +Y P ++V P++
Sbjct: 486 LRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLS 545
Query: 461 LLRQWKREAEKWYPSFHV 478
L W+RE E W P +V
Sbjct: 546 TLTSWQREFEIWAPEINV 563
Score = 51 (23.0 bits), Expect = 3.8e-08, Sum P(3) = 3.8e-08
Identities = 31/143 (21%), Positives = 63/143 (44%)
Query: 1020 DEEKMRLEEQASQVAQRAAEALRQS--RMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGS 1077
D EK L + Q+ + AL++ + + +R+ ++ T + T+G + V +
Sbjct: 706 DVEKS-LPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGT-RGSTSGFLNIVMELKKC 763
Query: 1078 TVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIR--GNQENAVGAGLERQ 1135
LIKP E + + G+ S+GK++ +LL R+R GN+ + + + R
Sbjct: 764 CNHCYLIKPPE-ENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRV-LIFSQMVRM 821
Query: 1136 FEVASSSANVARFADTRTSRSSK 1158
++ + + + R S K
Sbjct: 822 LDILAEYLTIKHYPFQRLDGSIK 844
Score = 42 (19.8 bits), Expect = 1.1e-49, Sum P(3) = 1.1e-49
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 489 GFRKKRAKSSDTDNDGE 505
G RKK+ S D D D E
Sbjct: 199 GKRKKQDSSDDDDEDDE 215
Score = 37 (18.1 bits), Expect = 6.8e-64, Sum P(3) = 6.8e-64
Identities = 16/105 (15%), Positives = 43/105 (40%)
Query: 91 STKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQ-LVKELS 149
+++E + D G +E + D S + N + ++ +K+Q ++ E
Sbjct: 23 ASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAK 82
Query: 150 HFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQ 194
P + + K ++ + + +R ++ Q+P + K++
Sbjct: 83 EKPASKKERIADVKKMWEEY-PDVYGVRRSNRSRQEPSRFNIKEE 126
>UNIPROTKB|J9NX79 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000044612
Uniprot:J9NX79
Length = 1689
Score = 565 (203.9 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 135/397 (34%), Positives = 225/397 (56%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEKLL-DVEWGYAVLDEGHRI 569
Y G+L SRN ++++ + ++ R + LITTYE L L + +L + W + +DE HR+
Sbjct: 533 YIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEIL-LKDKTVLGSINWAFLGVDEAHRL 591
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629
+N ++ + ++ HR+++TG P+QN L ELWSL F+ P K FE +
Sbjct: 592 KNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-- 649
Query: 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQR 689
G N Y+ L ++ P+LLRR+K DV LP K E +L ++ Q+
Sbjct: 650 ---GRENG--------YQS---LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQK 695
Query: 690 AVYRAFLASSEVEQILDGSRNSLYG-IDV---MRKICNH------PDLLEREQSCQIPDY 739
Y+ ++ + + + G+R S G +++ ++K CNH P+ ERE ++
Sbjct: 696 QYYK-WILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEVL-L 753
Query: 740 GNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
S K+ ++ ++L +++G+RVL+F+Q +MLDIL +L Y ++R+DG +
Sbjct: 754 SLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 813
Query: 800 QRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
R +D +N + S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA RI
Sbjct: 814 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 873
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
GQK+ V +YRL+T+GT+EE++ R K L + +++
Sbjct: 874 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQ 910
Score = 178 (67.7 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
Identities = 36/78 (46%), Positives = 47/78 (60%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL C+ I+ DEMGLGKTIQ +SFL L H +Y P ++V P++
Sbjct: 453 LRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLS 512
Query: 461 LLRQWKREAEKWYPSFHV 478
L W+RE E W P +V
Sbjct: 513 TLTSWQREFEIWAPEINV 530
Score = 51 (23.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 31/143 (21%), Positives = 63/143 (44%)
Query: 1020 DEEKMRLEEQASQVAQRAAEALRQS--RMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGS 1077
D EK L + Q+ + AL++ + + +R+ ++ T + T+G + V +
Sbjct: 673 DVEKS-LPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGT-RGSTSGFLNIVMELKKC 730
Query: 1078 TVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIR--GNQENAVGAGLERQ 1135
LIKP E + + G+ S+GK++ +LL R+R GN+ + + + R
Sbjct: 731 CNHCYLIKPPE-ENERENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRV-LIFSQMVRM 788
Query: 1136 FEVASSSANVARFADTRTSRSSK 1158
++ + + + R S K
Sbjct: 789 LDILAEYLTIKHYPFQRLDGSIK 811
Score = 45 (20.9 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 474 PSFHVELLHDSAQDLGFRKKRAKSSDTDN-DGEGSHDSDYEGNLSSRNPK 522
PS E+ D + +KK+ K + +N + + S D EG+ + K
Sbjct: 1342 PSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKSK 1391
Score = 39 (18.8 bits), Expect = 5.3e-49, Sum P(2) = 5.3e-49
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 489 GFRKKRAKSSDTDNDGE 505
G RK++ S D D D E
Sbjct: 184 GKRKRQDSSDDDDEDDE 200
Score = 38 (18.4 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 493 KRAKSSDTDNDGEGSHDS 510
K+A+++D+D+D E +
Sbjct: 1047 KKAQTNDSDSDTESKRQA 1064
Score = 38 (18.4 bits), Expect = 3.1e-06, Sum P(3) = 3.1e-06
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 539 LITTYEQLRLLGEKLLDVE 557
LI T +L+L +K+L VE
Sbjct: 1252 LIKTDPELKLTDKKILPVE 1270
Score = 37 (18.1 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 16/72 (22%), Positives = 32/72 (44%)
Query: 482 HDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLIT 541
+DS D +++ +SS ++++ + S D D + R L+ +E I
Sbjct: 1052 NDSDSDTESKRQAQRSSASESETDDS-DDDKKPKRRGRPRSVRKDLVEGFTDAEIRRFIK 1110
Query: 542 TYEQLRLLGEKL 553
Y++ L E+L
Sbjct: 1111 AYKKFGLPLERL 1122
>FB|FBgn0011604 [details] [associations]
symbol:Iswi "Imitation SWI" species:7227 "Drosophila
melanogaster" [GO:0006338 "chromatin remodeling"
evidence=ISS;NAS;TAS] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IGI;IDA] [GO:0000166 "nucleotide binding"
evidence=TAS] [GO:0016584 "nucleosome positioning" evidence=IDA]
[GO:0006334 "nucleosome assembly" evidence=IDA] [GO:0016590 "ACF
complex" evidence=NAS;IDA;TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0008623 "CHRAC"
evidence=NAS;IDA;TAS] [GO:0006333 "chromatin assembly or
disassembly" evidence=IDA;TAS] [GO:0042766 "nucleosome
mobilization" evidence=IDA;TAS] [GO:0016887 "ATPase activity"
evidence=NAS] [GO:0035060 "brahma complex" evidence=IDA]
[GO:0003678 "DNA helicase activity" evidence=TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0005667 "transcription factor
complex" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=TAS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IMP] [GO:0035076 "ecdysone
receptor-mediated signaling pathway" evidence=IGI] [GO:0007517
"muscle organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0042752 "regulation of circadian
rhythm" evidence=IMP] [GO:0006325 "chromatin organization"
evidence=IMP] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0031213 "RSF complex"
evidence=IPI] [GO:0005700 "polytene chromosome" evidence=IDA]
[GO:0070615 "nucleosome-dependent ATPase activity" evidence=IDA]
[GO:0035063 "nuclear speck organization" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 EMBL:AE013599 GO:GO:0005524
GO:GO:0045892 GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0042752 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0005667
GO:GO:0048813 GO:GO:0007517 InterPro:IPR017884 PROSITE:PS51293
GO:GO:0005700 GO:GO:0035076 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0031491 GO:GO:0043044 GO:GO:0016584 GO:GO:0006334
GO:GO:0016589 GO:GO:0016590 GO:GO:0008623 GO:GO:0008094
ChiTaRS:SMARCA1 GeneTree:ENSGT00680000100002 KO:K11654
SUPFAM:SSF101224 EMBL:L27127 EMBL:AY094908 EMBL:BT044562 PIR:A56533
RefSeq:NP_523719.1 RefSeq:NP_725203.1 RefSeq:NP_725204.1
UniGene:Dm.2581 PDB:1OFC PDBsum:1OFC ProteinModelPortal:Q24368
SMR:Q24368 DIP:DIP-24067N IntAct:Q24368 MINT:MINT-252539
STRING:Q24368 PaxDb:Q24368 PRIDE:Q24368 EnsemblMetazoa:FBtr0087841
EnsemblMetazoa:FBtr0087842 EnsemblMetazoa:FBtr0087843 GeneID:36390
KEGG:dme:Dmel_CG8625 CTD:36390 FlyBase:FBgn0011604
InParanoid:Q24368 OMA:EDYCHWR OrthoDB:EOG4M0CGK PhylomeDB:Q24368
EvolutionaryTrace:Q24368 GenomeRNAi:36390 NextBio:798287
Bgee:Q24368 GermOnline:CG8625 GO:GO:0031213 GO:GO:0070615
GO:GO:0035063 Uniprot:Q24368
Length = 1027
Score = 547 (197.6 bits), Expect = 1.4e-63, Sum P(3) = 1.4e-63
Identities = 141/394 (35%), Positives = 220/394 (55%)
Query: 514 GNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRN 571
G+ +RN D+L + E + +T+YE + EK + W Y V+DE HRI+N
Sbjct: 210 GDQDTRNTFIRDVL----MPGEWDVCVTSYEMC--IREKSVFKKFNWRYLVIDEAHRIKN 263
Query: 572 PNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITV 631
+++S + ++ +T +R+++TG P+QN L ELW+L +F+ P F+ F +
Sbjct: 264 EKSKLSEILREFKTANRLLITGTPLQNNLHELWALLNFLLPDVFNSSEDFDEWFNTNTCL 323
Query: 632 GGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAV 691
G A + L VL+ P+LLRR+KA+V +L K E +F L++ QR
Sbjct: 324 GDDALITRLHA--------VLK----PFLLRRLKAEVEKRLKPKKEMKIFVGLSKMQRDW 371
Query: 692 YRAFLASSEVEQILDGS----RNSLYGIDV-MRKICNHPDLLEREQSCQIPDYGNPER-- 744
Y L +++ +++G+ + L I + +RK NHP L + + P Y
Sbjct: 372 YTKVLLK-DID-VVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPG--PPYTTDTHLV 427
Query: 745 --SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRM 802
S KM ++ ++L ++QG RVL+F+Q +MLDILE + Y Y R+DG TP + R
Sbjct: 428 YNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRN 487
Query: 803 ALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQK 861
I E+N ++S F+F+L+T+ GGLG NL A+ VII+D DWNP D+QA +RA RIGQK
Sbjct: 488 RQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQK 547
Query: 862 QDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
+ V V+RLIT T+EEK+ R K L +++
Sbjct: 548 KQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQ 581
Score = 179 (68.1 bits), Expect = 1.4e-63, Sum P(3) = 1.4e-63
Identities = 36/79 (45%), Positives = 46/79 (58%)
Query: 404 DYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVTLL 462
DYQ G+ W+ L+ GI+ DEMGLGKT+Q +S LG L HF N P IV+ P + L
Sbjct: 130 DYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYLKHFKNQAGPHIVIVPKSTL 189
Query: 463 RQWKREAEKWYPSFHVELL 481
+ W E +KW PS L
Sbjct: 190 QNWVNEFKKWCPSLRAVCL 208
Score = 53 (23.7 bits), Expect = 1.4e-63, Sum P(3) = 1.4e-63
Identities = 26/91 (28%), Positives = 48/91 (52%)
Query: 978 KGKEKVDNIGDEV--DEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQ 1035
+G VDN +++ DE NI++ F AN + S+ D + D + + +A Q
Sbjct: 581 QGGRLVDNRSNQLNKDEMLNIIR--FGANQVFSSKETD--ITDEDIDVILERGEAKTAEQ 636
Query: 1036 RAA-EALRQSRMLRSRDDISVPTWTGKSGTA 1065
+AA ++L +S LR+ ++ T G++GT+
Sbjct: 637 KAALDSLGESS-LRT---FTMDT-NGEAGTS 662
Score = 45 (20.9 bits), Expect = 9.5e-63, Sum P(3) = 9.5e-63
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVDEET 994
++ N I ++ + G++ +DNI +V+ +T
Sbjct: 803 RDFNQFIKANEKYGRDDIDNIAKDVEGKT 831
Score = 42 (19.8 bits), Expect = 2.0e-62, Sum P(3) = 2.0e-62
Identities = 18/83 (21%), Positives = 38/83 (45%)
Query: 1020 DEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDIS--VPTWTGKSGTAGAPSSVRKKFGS 1077
D K++ EEQ ++ + AE L + + + +S WT + ++ +K+G
Sbjct: 763 DATKVQREEQR-KIDE--AEPLTEEEIQEKENLLSQGFTAWTKRDFNQFIKAN--EKYGR 817
Query: 1078 TVGSQLIKPLEGSSSNKTGEFNS 1100
+ K +EG + + E+N+
Sbjct: 818 DDIDNIAKDVEGKTPEEVIEYNA 840
Score = 40 (19.1 bits), Expect = 8.7e-09, Sum P(3) = 8.7e-09
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QR ++ +KD+ +N G NI QL + N
Sbjct: 368 QRDWYTKVLLKDIDVVNGAGKVEKMRLQNILMQLRKCTN 406
>UNIPROTKB|B4E0W6 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 UniGene:Hs.500526 HGNC:HGNC:17307
EMBL:AL365398 EMBL:AL359198 EMBL:AK303554 IPI:IPI01015564
SMR:B4E0W6 STRING:B4E0W6 Ensembl:ENST00000544642 HOVERGEN:HBG104002
Uniprot:B4E0W6
Length = 677
Score = 355 (130.0 bits), Expect = 1.6e-63, Sum P(4) = 1.6e-63
Identities = 73/168 (43%), Positives = 102/168 (60%)
Query: 763 HRVLLFAQTQQMLDILESFLIAS---GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFIL 819
HR+L+F Q + MLDI+E L+ Y R+DG P QR +++ +NN + + +L
Sbjct: 473 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLL 532
Query: 820 TTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKV 879
TT VGGLG NLTGA+ V+ + DWNP D+QA +RA RIGQK+ V VYRLITRGT+EEK+
Sbjct: 533 TTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKI 592
Query: 880 YHRQIYKHFLTNKILKNPQQR-RFFKARNMKDLFTLNDDGNGGSTETS 926
Q +K + N ++ + + DLFTL+ DG +TS
Sbjct: 593 MGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDGKAEKADTS 640
Score = 278 (102.9 bits), Expect = 1.6e-63, Sum P(4) = 1.6e-63
Identities = 60/161 (37%), Positives = 89/161 (55%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
L++ +Y+ +R + ++++ Y +LDEGH I+N ++S KQL +RII++G PIQ
Sbjct: 206 LIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQ 265
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N + ELWSLFDF+ PG LG F A + PI A +S + L ++
Sbjct: 266 NNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVL 325
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS 698
P+LLRRMK DV LP K +C+L+ Q +Y F S
Sbjct: 326 PFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKS 366
Score = 132 (51.5 bits), Expect = 1.6e-63, Sum P(4) = 1.6e-63
Identities = 38/102 (37%), Positives = 50/102 (49%)
Query: 393 KIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA--LHFSNMY 450
KIP I L YQ+ GV WL L+ + GI+ D+MGLGKT+Q + L H + Y
Sbjct: 85 KIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEY 144
Query: 451 K----------PSIVVCPVTLLRQWKREAEKWYPSFHVELLH 482
PS+VVCP TL W E K+ ++ LH
Sbjct: 145 ARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLH 186
Score = 57 (25.1 bits), Expect = 1.6e-63, Sum P(4) = 1.6e-63
Identities = 24/80 (30%), Positives = 36/80 (45%)
Query: 698 SSEVEQI-LDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLK 756
S E E+ L + + + +RK+CNHP L+ Q P++ +EK+ V L
Sbjct: 382 SEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQH---PEFKTT--AEKLAVQNSSLH 436
Query: 757 VWKDQGHRVLLFAQTQQMLD 776
D H L A Q +LD
Sbjct: 437 ---DIQHAPKLSALKQLLLD 453
Score = 52 (23.4 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 1131 GLERQFEVASSSANVARFADTRTSRSSKNASDVQPEILIRQICTFMQQR 1179
G ERQF A + D R+S + A + + L RQ+ F+ +R
Sbjct: 284 GTERQF-AARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRR 331
Score = 37 (18.1 bits), Expect = 1.3e-27, Sum P(2) = 1.3e-27
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 701 VEQILDGSRNSLYGIDV 717
+EQ+LDG + Y I V
Sbjct: 72 LEQLLDGKKLENYKIPV 88
>ZFIN|ZDB-GENE-050419-256 [details] [associations]
symbol:chd2 "chromodomain helicase DNA binding
protein 2" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 ZFIN:ZDB-GENE-050419-256
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 EMBL:BX649578 IPI:IPI00999128
Ensembl:ENSDART00000127730 ArrayExpress:E7F7R2 Bgee:E7F7R2
Uniprot:E7F7R2
Length = 1813
Score = 555 (200.4 bits), Expect = 1.7e-63, Sum P(3) = 1.7e-63
Identities = 143/439 (32%), Positives = 237/439 (53%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHR 568
Y G+++SR + ++ + + R + L+TTYE L L +K L ++ W + +DE HR
Sbjct: 569 YLGDVTSRKTIRDYEWINPQTKRIKFNALLTTYEIL--LKDKGVLGNINWAFLGVDEAHR 626
Query: 569 IRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP 628
++N ++ + ++ HR+++TG P+QN L ELWSL F+ K FE E
Sbjct: 627 LKNDDSLLYKTLIDFRSNHRLLITGTPLQNSLKELWSLLHFLMSDKFESWEDFEDEHGK- 685
Query: 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQ 688
G N Y+ L ++ P+LLRR+K DV LP K E +L ++ +Q
Sbjct: 686 ----GRDNG--------YQS---LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVDMSAQQ 730
Query: 689 RAVYRAFLASSEVEQILDGSRNSLYG-IDV---MRKICNHPDLLEREQSCQ--IPD---Y 739
+ Y+ ++ + + + G+R S G +++ ++K CNH L+++ + + P
Sbjct: 731 KQFYK-WILTRNFKALSKGTRGSSSGFLNIVMELKKCCNHAFLIKQPEDGENDAPQEHLQ 789
Query: 740 GNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
K+ ++ ++L KD+G+RVL+F+Q +MLDIL +L Y+++R+DG +
Sbjct: 790 SLVRGGGKLVLLDKLLTRLKDRGNRVLIFSQMVRMLDILADYLSMKRYQFQRLDGSIKGE 849
Query: 800 QRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
R +D +N S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA RI
Sbjct: 850 LRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 909
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDG 918
GQK+ V +YRL+T+GT+EE + R K L + ++ QR R + D + N +
Sbjct: 910 GQKKQVNIYRLVTKGTVEEDIIERAKKKMVLDHLVI----QRMDTTGRTVLDNSSANSNS 965
Query: 919 NG-GSTETSNIFSQLSEDV 936
N E S I +ED+
Sbjct: 966 NPFNKEELSAILKFGAEDL 984
Score = 182 (69.1 bits), Expect = 1.7e-63, Sum P(3) = 1.7e-63
Identities = 45/100 (45%), Positives = 56/100 (56%)
Query: 383 PPFVTLEGGLKIPESIFNN---LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLS 439
P FV L+ K P I + L DYQ GV WL C+ I+ DEMGLGKTIQ +S
Sbjct: 470 PRFVPLK---KQPSYIGDENLELRDYQLDGVNWLAHSWCRCNSVILADEMGLGKTIQTIS 526
Query: 440 FLGAL-HFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHV 478
FL L H +Y P IVV P++ L W+RE + W P +V
Sbjct: 527 FLSYLFHQHQLYGPFIVVVPLSTLTSWQREFDTWAPDMNV 566
Score = 57 (25.1 bits), Expect = 1.7e-63, Sum P(3) = 1.7e-63
Identities = 21/90 (23%), Positives = 44/90 (48%)
Query: 93 KEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLK-KTKAQLVKELSHF 151
K++N D DS +++ E+E S+ ++ + ++ + RL + + +TK+ K+
Sbjct: 147 KKENTWKDDDSNDEEDVEEETSSSESEQEEKKVR----SRRLPARRPQTKSSASKQSQKG 202
Query: 152 PKGITSKGIEHDKFIQDLVKEEHRPKRKSK 181
K + + D D EE PKR+++
Sbjct: 203 RKQRKQESSDEDDDDDD-DDEEDTPKRQTR 231
Score = 52 (23.4 bits), Expect = 7.6e-10, Sum P(3) = 7.6e-10
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 474 PSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN--PKK 523
PS E+ D A+ +KK+ K + + + G+ + EG+ + PKK
Sbjct: 1371 PSEEGEVKDDGAEKTPTKKKQKKDNKENKEKTGTPKKEKEGDKDKKRSKPKK 1422
Score = 45 (20.9 bits), Expect = 3.0e-62, Sum P(3) = 3.0e-62
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 88 RRVSTKEDNDIDDGDSTEQDGREDEKSA 115
++ S+ ED+D DD D + R+ + A
Sbjct: 207 KQESSDEDDDDDDDDEEDTPKRQTRRRA 234
Score = 45 (20.9 bits), Expect = 3.8e-09, Sum P(3) = 3.8e-09
Identities = 24/93 (25%), Positives = 43/93 (46%)
Query: 483 DSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRV--LRSESGLLI 540
D ++D K+R + N+ EG D++ + + KK+ + R+ + +S L+
Sbjct: 1110 DDSEDDKRPKRRGRPRARKNNVEGFTDAEIRRFIKAY--KKFGAPLERLEAIARDSELVE 1167
Query: 541 TTYEQLRLLGEKLLDVEWGYAVLD-EGHRIRNP 572
+ L+ LGE L+ AV + E H NP
Sbjct: 1168 KSIADLKRLGE-LVHNSCVTAVQEHEEHLKENP 1199
Score = 43 (20.2 bits), Expect = 2.1e-47, Sum P(3) = 2.1e-47
Identities = 7/23 (30%), Positives = 15/23 (65%)
Query: 489 GFRKKRAKSSDTDNDGEGSHDSD 511
G ++++ +SSD D+D + + D
Sbjct: 202 GRKQRKQESSDEDDDDDDDDEED 224
Score = 42 (19.8 bits), Expect = 2.5e-61, Sum P(4) = 2.5e-61
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 94 EDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKK 139
E N D +S + G E S S + + D L +KK
Sbjct: 54 ESNSTSDSESHSESGSESNGSKSHQSSAQVKDKPVRKKDNLADVKK 99
Score = 41 (19.5 bits), Expect = 7.9e-62, Sum P(3) = 7.9e-62
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 88 RRVSTKEDNDIDDGDSTEQD 107
+R D D DD D E+D
Sbjct: 205 QRKQESSDEDDDDDDDDEED 224
Score = 41 (19.5 bits), Expect = 2.5e-61, Sum P(4) = 2.5e-61
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 156 TSKGIEHDKFIQDLVKEEHRPKRKS---KEAQKPGKDRSKQQKT 196
+S+ + +K ++ RP+ KS K++QK G+ + KQ+ +
Sbjct: 169 SSESEQEEKKVRSRRLPARRPQTKSSASKQSQK-GRKQRKQESS 211
Score = 40 (19.1 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 898 QQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QQ++F+K ++ L+ G S+ NI +L + N
Sbjct: 729 QQKQFYKWILTRNFKALSKGTRGSSSGFLNIVMELKKCCN 768
Score = 37 (18.1 bits), Expect = 8.9e-47, Sum P(3) = 8.9e-47
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 491 RKKRAKSSDTDNDGEGSHDS 510
RK+ + D D+D + D+
Sbjct: 206 RKQESSDEDDDDDDDDEEDT 225
Score = 37 (18.1 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 493 KRAKSSDTDND--------GEGSHDSDYEGNLSSRNPKK 523
K+A+++D+D+D GS DS+ + + + PK+
Sbjct: 1083 KKAQANDSDSDVGSKLKHRSSGS-DSETDDSEDDKRPKR 1120
>ZFIN|ZDB-GENE-021125-1 [details] [associations]
symbol:smarca5 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 5"
species:7955 "Danio rerio" [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016818 "hydrolase activity, acting on
acid anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0060041
"retina development in camera-type eye" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 ZFIN:ZDB-GENE-021125-1 GO:GO:0005524
GO:GO:0003677 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0060041
InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 OMA:EDYCHWR HOVERGEN:HBG056329 EMBL:CU550733
IPI:IPI00619566 UniGene:Dr.76168 Ensembl:ENSDART00000123972
ArrayExpress:B8A552 Bgee:B8A552 Uniprot:B8A552
Length = 1035
Score = 564 (203.6 bits), Expect = 2.0e-63, Sum P(3) = 2.0e-63
Identities = 136/373 (36%), Positives = 210/373 (56%)
Query: 531 VLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRII 590
+L E + +T+YE L + W Y V+DE HRI+N +++S + ++ +T +R++
Sbjct: 258 LLPGEWDVCVTSYEMLIIERAVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLL 317
Query: 591 MTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAV 650
+TG P+QN L ELW+L +F+ P F+A F +G R
Sbjct: 318 LTGTPLQNNLHELWALLNFLLPDVFNSSEDFDAWFDTNNCLG--------DTKLVERLHT 369
Query: 651 VLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD--GS 708
VLR P+LLRR+KADV L K E ++ L++ QR Y L +++ IL+ G
Sbjct: 370 VLR----PFLLRRIKADVEKSLLPKKEIKIYVGLSKMQREWYTKILMK-DID-ILNSAGK 423
Query: 709 RNSLYGIDVM---RKICNHPDLLEREQSCQ--IPDYGNPERSEKMKVVAQVLKVWKDQGH 763
+ + ++V+ RK CNHP L + + D S KM V+ ++L K+QG
Sbjct: 424 MDKMRLLNVLMQLRKCCNHPYLFDGAEPGPPYTTDLHLVVNSGKMVVLDKLLPKLKEQGS 483
Query: 764 RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTK 822
RVL+F+Q ++LDILE + + Y Y R+DG TP ++R I+ +N +S F+F+L+T+
Sbjct: 484 RVLIFSQMTRVLDILEDYCMWRNYGYCRLDGQTPHEERQISINAFNEPNSSKFLFMLSTR 543
Query: 823 VGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHR 882
GGLG NL A+ VII+D DWNP D+QA +RA RIGQK+ V V+R IT T+EE++ R
Sbjct: 544 AGGLGINLATADVVIIYDSDWNPQVDLQAMDRAHRIGQKKQVRVFRFITDNTVEERIVER 603
Query: 883 QIYKHFLTNKILK 895
K L + +++
Sbjct: 604 AEMKLRLDSIVIQ 616
Score = 170 (64.9 bits), Expect = 2.0e-63, Sum P(3) = 2.0e-63
Identities = 37/91 (40%), Positives = 52/91 (57%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL L+ GI+ DEMGLGKT+Q +S LG + H+ N+ P +V+ P +
Sbjct: 163 LRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKS 222
Query: 461 LLRQWKREAEKWYPSFH-VELLHDSAQDLGF 490
L W E ++W PS V L+ D + F
Sbjct: 223 TLYNWMNEFKRWVPSLKAVCLIGDREERTAF 253
Score = 45 (20.9 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QR ++ MKD+ LN G N+ QL + N
Sbjct: 403 QREWYTKILMKDIDILNSAGKMDKMRLLNVLMQLRKCCN 441
Score = 42 (19.8 bits), Expect = 2.0e-63, Sum P(3) = 2.0e-63
Identities = 8/29 (27%), Positives = 19/29 (65%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVDEET 994
++ N I ++ + G++ ++NI EV+ +T
Sbjct: 830 RDFNQFIKANEKWGRDDIENIAREVEGKT 858
>UNIPROTKB|D4AD08 [details] [associations]
symbol:Chd2 "Chromodomain helicase DNA binding protein 2
(Predicted)" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:CH473980
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 KO:K11367 CTD:1106 OrthoDB:EOG4QRH36
IPI:IPI00778855 RefSeq:NP_001100993.1 UniGene:Rn.225034
Ensembl:ENSRNOT00000055829 GeneID:308738 KEGG:rno:308738
RGD:1310056 NextBio:659434 Uniprot:D4AD08
Length = 1834
Score = 565 (203.9 bits), Expect = 2.1e-63, Sum P(2) = 2.1e-63
Identities = 135/397 (34%), Positives = 225/397 (56%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEKLL-DVEWGYAVLDEGHRI 569
Y G+L SRN ++++ + ++ R + LITTYE L L + +L + W + +DE HR+
Sbjct: 571 YIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEIL-LKDKTVLGSINWAFLGVDEAHRL 629
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629
+N ++ + ++ HR+++TG P+QN L ELWSL F+ P K FE +
Sbjct: 630 KNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-- 687
Query: 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQR 689
G N Y+ L ++ P+LLRR+K DV LP K E +L ++ Q+
Sbjct: 688 ---GRENG--------YQS---LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQK 733
Query: 690 AVYRAFLASSEVEQILDGSRNSLYG-IDV---MRKICNH------PDLLEREQSCQIPDY 739
Y+ ++ + + + G+R S G +++ ++K CNH P+ ERE ++
Sbjct: 734 QYYK-WILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIRAPEDSERETGQEVLQ- 791
Query: 740 GNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
S K+ ++ ++L +++G+RVL+F+Q +MLDIL +L Y ++R+DG +
Sbjct: 792 SLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 851
Query: 800 QRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
R +D +N + S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA RI
Sbjct: 852 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 911
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
GQK+ V +YRL+T+GT+EE++ R K L + +++
Sbjct: 912 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQ 948
Score = 177 (67.4 bits), Expect = 2.1e-63, Sum P(2) = 2.1e-63
Identities = 36/78 (46%), Positives = 47/78 (60%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL C+ I+ DEMGLGKTIQ +SFL L H +Y P ++V P++
Sbjct: 491 LRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLS 550
Query: 461 LLRQWKREAEKWYPSFHV 478
L W+RE E W P +V
Sbjct: 551 TLTSWQREFEIWAPEVNV 568
Score = 45 (20.9 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 31/143 (21%), Positives = 63/143 (44%)
Query: 1020 DEEKMRLEEQASQVAQRAAEALRQS--RMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGS 1077
D EK L + Q+ + AL++ + + +R+ ++ T + T+G + V +
Sbjct: 711 DVEKS-LPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGT-RGSTSGFLNIVMELKKC 768
Query: 1078 TVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIR--GNQENAVGAGLERQ 1135
LI+ E S +TG+ S+GK++ +LL R+R GN+ + + + R
Sbjct: 769 CNHCYLIRAPE-DSERETGQEVLQSLIRSSGKLILLDKLLTRLRERGNRV-LIFSQMVRM 826
Query: 1136 FEVASSSANVARFADTRTSRSSK 1158
++ + + + R S K
Sbjct: 827 LDILAEYLTIKHYPFQRLDGSIK 849
Score = 44 (20.5 bits), Expect = 2.1e-49, Sum P(2) = 2.1e-49
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 489 GFRKKRAKSSDTDNDGE 505
G RKK+ S D D+D E
Sbjct: 200 GKRKKQESSDDDDDDDE 216
Score = 38 (18.4 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 493 KRAKSSDTDNDGEGSHDS 510
K+A+++D+D+D E +
Sbjct: 1085 KKAQTNDSDSDTESKRQA 1102
Score = 37 (18.1 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 16/72 (22%), Positives = 32/72 (44%)
Query: 482 HDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLIT 541
+DS D +++ +SS ++++ + S D D + R L+ +E I
Sbjct: 1090 NDSDSDTESKRQAQRSSASESETDDS-DDDKKPKRRGRPRSVRKDLVEGFTDAEIRRFIK 1148
Query: 542 TYEQLRLLGEKL 553
Y++ L E+L
Sbjct: 1149 AYKKFGLPLERL 1160
>UNIPROTKB|E1BAN8 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:DAAA02028556 EMBL:DAAA02028557 IPI:IPI00685860
RefSeq:NP_001192313.1 UniGene:Bt.55708 Ensembl:ENSBTAT00000013708
GeneID:505992 KEGG:bta:505992 NextBio:20867400 Uniprot:E1BAN8
Length = 1566
Score = 351 (128.6 bits), Expect = 2.7e-63, Sum P(4) = 2.7e-63
Identities = 114/416 (27%), Positives = 181/416 (43%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K+ + +L K QGHRVL+++Q +M+D+LE +++ + Y R+DG + + +R +
Sbjct: 1110 SGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDM 1169
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+ ++ +D+F+F+L+T+ GGLG NLT A+ VI +D DWNP+ D QA +RA R+GQ + V
Sbjct: 1170 VADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1229
Query: 865 TVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRR-FFKARNMKDLFTLNDDGNGGST 923
TVYRLI +GTIEE++ R K + ++ + K + + L L+D+
Sbjct: 1230 TVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPKEVVSLL-LDDEELEKKL 1288
Query: 924 ETSNIFSQLSEDVNVVGXXXXXXXXXXXXXAASANADDAVGDKENNLEIGSSRRKGKEKV 983
+ E+ N V D + NL I +
Sbjct: 1289 RLRQEEKRQQEETNRVKERKRKREKYAEKKKKEDELDGKRRKEGMNLVIPFVPSADNSNL 1348
Query: 984 DNIGDE-VDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRL--EEQASQVAQRAAEA 1040
GD+ + + S F I S ++ +I M + ++ AS Q A
Sbjct: 1349 SADGDDSFISVDSAMPSPFSEISISSELHTGSIPPDESSSDMLVIVDDPASSAPQSRATN 1408
Query: 1041 LRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGSTVGS-QLIKPL-EGSSSNKTGEF 1098
S M S D + AG S R + G GS K +G S T
Sbjct: 1409 SPAS-MTGSVSDTVNGISIQEMPAAGRGHSARSR-GRPKGSGSTAKGAGKGRSRKSTAGS 1466
Query: 1099 NSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQFEVASSSANVARFADTRTS 1154
+ AGA AG +S+ A N + A Q + A +A F + S
Sbjct: 1467 AAAMAGAKAGAAAASAAAYAAYGYNVSKGISASSPLQTSLVRP-AGLADFGPSSAS 1521
Score = 257 (95.5 bits), Expect = 2.7e-63, Sum P(4) = 2.7e-63
Identities = 66/208 (31%), Positives = 108/208 (51%)
Query: 538 LLITTYEQLRLLGEKLLD-VEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPI 596
++IT+Y QL + K V+W Y VLDE +++ ++ + Q Q +R+++TG PI
Sbjct: 635 VVITSY-QLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPI 693
Query: 597 QNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLI 656
QN ++ELW+L F+ P F F+ I N S + + R ++L+
Sbjct: 694 QNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHA-ENKSAIDENQLSRLHMILK--- 749
Query: 657 MPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGID 716
P++LRR+K DV +L K E +++C LT Q+ +Y+A +E +L S S
Sbjct: 750 -PFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQ 808
Query: 717 ---------VM--RKICNHPDLLEREQS 733
VM RK+CNHP+L ER+++
Sbjct: 809 TTTSSLMNLVMQFRKVCNHPELFERQET 836
Score = 166 (63.5 bits), Expect = 2.7e-63, Sum P(4) = 2.7e-63
Identities = 36/95 (37%), Positives = 55/95 (57%)
Query: 387 TLEGGLKIPE-SIFNN-LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL 444
++ G IP+ +IFN L YQ G+ WL L+ Q GI+ DEMGLGKT+Q ++ L L
Sbjct: 510 SIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHL 569
Query: 445 -HFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHV 478
N++ P +++ P + L W +E ++ P F V
Sbjct: 570 AERENIWGPFLIISPASTLNNWHQEFTRFVPKFKV 604
Score = 74 (31.1 bits), Expect = 2.7e-63, Sum P(4) = 2.7e-63
Identities = 29/109 (26%), Positives = 52/109 (47%)
Query: 91 STKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSH 150
S++ D+ +D D E++ +DE+ + S D L + L + K L + K KEL
Sbjct: 135 SSEADSHSEDNDEGEEED-DDEEEELSLSRED--LHNMLRLHKYKKLHQNKYSKEKELQQ 191
Query: 151 FPKGITSKGI--EHDKFIQDLVKEEHR--PKRKSKEAQKPGKDRSKQQK 195
+ S G+ +D F + ++ H PK+K + +K K + K+ K
Sbjct: 192 YQ--YYSAGLLSTYDPFYE---QQRHLLGPKKKKFKEEKKLKAKLKKVK 235
Score = 42 (19.8 bits), Expect = 9.9e-48, Sum P(3) = 9.9e-48
Identities = 16/51 (31%), Positives = 21/51 (41%)
Query: 467 REAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLS 517
+++ KW S LL D + + A S DND D D E LS
Sbjct: 120 KKSRKWLKSI---LLSDESSE-------ADSHSEDNDEGEEEDDDEEEELS 160
Score = 41 (19.5 bits), Expect = 5.3e-09, Sum P(3) = 5.3e-09
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 671 QLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRN 710
Q + T + L C T E+R + RA SE+++++ N
Sbjct: 1225 QTKQVTVYRLICKGTIEERILQRA-KEKSEIQRMVISGGN 1263
>ZFIN|ZDB-GENE-070705-296 [details] [associations]
symbol:si:dkey-148b12.1 "si:dkey-148b12.1"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 ZFIN:ZDB-GENE-070705-296 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491
GO:GO:0043044 GeneTree:ENSGT00680000100002 HOGENOM:HOG000192862
SUPFAM:SSF101224 HOVERGEN:HBG056329 KO:K11727 OrthoDB:EOG44J2H9
EMBL:CR848717 EMBL:CU104724 IPI:IPI00488326 RefSeq:NP_001093467.1
UniGene:Dr.81160 SMR:A5WUY4 Ensembl:ENSDART00000020725
GeneID:559803 KEGG:dre:559803 OMA:IGHAWIN NextBio:20883144
Uniprot:A5WUY4
Length = 1036
Score = 562 (202.9 bits), Expect = 3.5e-63, Sum P(3) = 3.5e-63
Identities = 151/425 (35%), Positives = 238/425 (56%)
Query: 531 VLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHR 588
++ E + +T+YE + + EK + W Y V+DE HRI+N +++S + ++ +T +R
Sbjct: 238 MMPGEWDVCVTSYEMV--IREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIAREFKTTNR 295
Query: 589 IIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRC 648
+++TG P+QN L ELWSL +F+ P F++ F N Q R
Sbjct: 296 LLLTGTPLQNNLHELWSLLNFLLPDVFNSASDFDSWFDT--------NCLGDQ-KLVERL 346
Query: 649 AVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD-- 706
VLR P+LLRR+KA+V LP K E ++ L++ QR Y L +++ IL+
Sbjct: 347 HAVLR----PFLLRRIKAEVEKSLPPKKEVKIYLGLSKMQREWYTRILMK-DID-ILNSA 400
Query: 707 GSRNSLYGIDVM---RKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVWK 759
G + + ++++ RK CNHP L + + P Y S KM + ++L +
Sbjct: 401 GKMDKMRLLNILMQLRKCCNHPYLFDGAEPG--PPYTTDTHLVINSGKMVALDKLLPKVQ 458
Query: 760 DQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYN--NSSDVFIF 817
+QG RVL+F+Q ++LDILE + + G+EY R+DG TP + R ID +N NSS FIF
Sbjct: 459 EQGSRVLIFSQMTRVLDILEDYCMWRGFEYCRLDGNTPHEAREQAIDAFNAPNSSK-FIF 517
Query: 818 ILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEE 877
+L+T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQ++ V V+RLIT T+EE
Sbjct: 518 MLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQRKPVKVFRLITDNTVEE 577
Query: 878 KVYHRQIYKHFLTNKILKNPQQRRFFKARNM--KDLFTLNDDGNGGSTETSNIFSQLS-E 934
++ R K L + ++ QQ R +N KD L +G + ++ S+L+ E
Sbjct: 578 RIVERAEMKLRLDSIVI---QQGRLIDQQNKLGKDEM-LQMIRHGATHVFASKDSELTDE 633
Query: 935 DVNVV 939
D++ +
Sbjct: 634 DIDTI 638
Score = 165 (63.1 bits), Expect = 3.5e-63, Sum P(3) = 3.5e-63
Identities = 34/83 (40%), Positives = 49/83 (59%)
Query: 395 PESIFNN-LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKP 452
P I N L DYQ G+ W+ L+ GI+ DEMGLGKT+Q ++ LG L H+ N+ P
Sbjct: 135 PSYIKNGTLRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTIALLGYLKHYRNIPGP 194
Query: 453 SIVVCPVTLLRQWKREAEKWYPS 475
+V+ P + L W E ++W P+
Sbjct: 195 HMVLVPKSTLHNWMNEFKRWVPT 217
Score = 47 (21.6 bits), Expect = 3.5e-63, Sum P(3) = 3.5e-63
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVDEET 994
++ N I ++ + G++ +DNI EV+ +T
Sbjct: 833 RDFNQFIKANEKYGRDDIDNIAREVEGKT 861
>UNIPROTKB|E1BC33 [details] [associations]
symbol:LOC788113 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0043234 "protein complex" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00384 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0005794 GO:GO:0043234 GO:GO:0003677 InterPro:IPR020478
PRINTS:PR00929 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GeneTree:ENSGT00530000063427 OMA:LGTGNPQ
EMBL:DAAA02057908 IPI:IPI00705506 Ensembl:ENSBTAT00000018503
Uniprot:E1BC33
Length = 3242
Score = 385 (140.6 bits), Expect = 6.0e-63, Sum P(6) = 6.0e-63
Identities = 75/181 (41%), Positives = 117/181 (64%)
Query: 747 KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALID 806
K++ +A +L+ K +GHRVL+F Q +MLD+LE FL G+ Y R+DG T V+QR AL++
Sbjct: 2055 KLQTLAVLLRQLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALME 2114
Query: 807 EYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866
+N +F FIL+T+ GG+G NLTGA+ V+ +D DWNP+ D QA++R RIGQ +DV +
Sbjct: 2115 RFNADKRIFCFILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHI 2174
Query: 867 YRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFFKARNMKDLFTLNDDGNGGSTET 925
YRLI+ T+EE + + K L + ++ +FK + +++LF + + GS+
Sbjct: 2175 YRLISERTVEENILKKANQKRMLGDMAIEGGNFTTAYFKQQTIRELFDMPLEEPSGSSVP 2234
Query: 926 S 926
S
Sbjct: 2235 S 2235
Score = 273 (101.2 bits), Expect = 6.0e-63, Sum P(6) = 6.0e-63
Identities = 66/192 (34%), Positives = 101/192 (52%)
Query: 540 ITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNK 599
IT+Y+ + + W Y +LDE I+N ++ + R+++TG P+QN
Sbjct: 730 ITSYKLVLQDHQAFRRKNWRYLILDEAQNIKNFKSQRWQSLLNFNSQRRLLLTGTPLQNS 789
Query: 600 LSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPY 659
L ELWSL F+ P F+ F+ P+T G + R VLR P+
Sbjct: 790 LMELWSLMHFLMPHVFQSHREFKEWFSNPLT-GMIEGSQEYNEGLVKRLHKVLR----PF 844
Query: 660 LLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL-DGSRNSLYGIDV- 717
LLRR+K DV Q+PKK EHV+ C L++ QR +Y F+A + ++ L G S+ I +
Sbjct: 845 LLRRVKVDVEKQMPKKYEHVIRCRLSKRQRCLYDDFMAQTTTKETLATGHFMSVINILMQ 904
Query: 718 MRKICNHPDLLE 729
+RK+CNHP+L +
Sbjct: 905 LRKVCNHPNLFD 916
Score = 172 (65.6 bits), Expect = 6.0e-63, Sum P(6) = 6.0e-63
Identities = 34/94 (36%), Positives = 56/94 (59%)
Query: 394 IPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN-MYKP 452
IP + L +YQ +G+ WL ++ ++ GI+ DEMGLGKTIQ +S L L + P
Sbjct: 618 IPLLLRGQLREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLLAHLACEKGNWGP 677
Query: 453 SIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQ 486
+++ P +++ W+ E ++W PSF + L + AQ
Sbjct: 678 HLIIVPTSVMLNWEMELKRWCPSFKI-LTYYGAQ 710
Score = 44 (20.5 bits), Expect = 6.0e-63, Sum P(6) = 6.0e-63
Identities = 17/85 (20%), Positives = 37/85 (43%)
Query: 954 AASANADDAVGDKENN-LEIGSSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNH 1012
+A + ++ V K+ + LE R + +E + E+ L + +G +
Sbjct: 2235 SAPDDEEETVASKQTHILEQALCRAEDEEDIRAATQAKAEQVAELAEFNENDGFTAGEGE 2294
Query: 1013 DAIM-NAHDEEKMRLEEQASQVAQR 1036
+A A DEE R E++ + + ++
Sbjct: 2295 EAGRPGAEDEEMSRAEQEIAALVEQ 2319
Score = 44 (20.5 bits), Expect = 6.0e-63, Sum P(6) = 6.0e-63
Identities = 31/148 (20%), Positives = 62/148 (41%)
Query: 51 DKSESIDPSSTSQEKLYNKL-RAVEF-EIGAVA--STVDHLRRVSTKEDNDID---DGDS 103
D++E + + ++E+L ++ A+E E+ S + L+R + +D G S
Sbjct: 409 DEAEDEEDTIAAEEQLEGEVDHAMELSELAREGELSMEELLQRYAGAYASDASAPGSGSS 468
Query: 104 TEQDGREDEKSAVQASPNDMT-LQHALTADRLKSLKKTKAQLVKE-LSHFPKGITSKGIE 161
E+D E E ++ P T + A D + Q E H + TS+ E
Sbjct: 469 EEEDEDEVEANSSDCEPEGATEAEEAPQEDSSSQSDSAEEQSEDEDEEHSEEEETSESSE 528
Query: 162 HDKFIQDLVKEEHRPKRKSKEAQKPGKD 189
++ + EE + + ++ E ++ D
Sbjct: 529 SEESESE-ESEESQSQSQADEEEEEDDD 555
Score = 43 (20.2 bits), Expect = 7.7e-63, Sum P(6) = 7.7e-63
Identities = 21/105 (20%), Positives = 46/105 (43%)
Query: 97 DIDDGDST-EQDGREDEKSAVQASPN-DMTLQHALTADRL-KSLKKTKAQLVKELSH-FP 152
D DD + T +D EDE+ + A + + HA+ L + + + +L++ + +
Sbjct: 398 DEDDEEFTANEDEAEDEEDTIAAEEQLEGEVDHAMELSELAREGELSMEELLQRYAGAYA 457
Query: 153 KGITSKGI----EHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQ 193
++ G E D+ + + P+ ++ + P +D S Q
Sbjct: 458 SDASAPGSGSSEEEDEDEVEANSSDCEPEGATEAEEAPQEDSSSQ 502
Score = 42 (19.8 bits), Expect = 9.7e-63, Sum P(6) = 9.7e-63
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 1014 AIMNAHDEEKMRLEEQAS--QVAQRA 1037
A+ A DEE +R QA QVA+ A
Sbjct: 2255 ALCRAEDEEDIRAATQAKAEQVAELA 2280
Score = 42 (19.8 bits), Expect = 9.7e-63, Sum P(6) = 9.7e-63
Identities = 25/114 (21%), Positives = 45/114 (39%)
Query: 92 TKEDNDIDDGD-STEQDGREDEKSAV----QASPNDMTLQHA----LTADRLKSLKKTKA 142
++ D++ DGD +++ ED++ + Q ND Q L + L++
Sbjct: 280 SRMDDEAIDGDFQPQEEEEEDDEETIEVEEQQEGNDAETQRREIELLRREGELPLEELLR 339
Query: 143 QLVKELSHFPKGITSKGIEHDKFIQDLVKE--EHRPKRKSKEAQKPG-KDRSKQ 193
L +L P + H+ +D +E E P + K P R+KQ
Sbjct: 340 SLPPQLLGGPSSPSGTPSSHESDTRDGPEEGGEEEPSQVLKVKPPPSVTQRNKQ 393
Score = 39 (18.8 bits), Expect = 4.1e-27, Sum P(6) = 4.1e-27
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 831 TGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV--TVYRLITRG 873
TG ++ + F N T A+ R +GQ + + V L++ G
Sbjct: 1209 TGGSKPLTFQIQGNKLTLTGAQVRQLAVGQPRPLQRNVVHLVSAG 1253
Score = 38 (18.4 bits), Expect = 6.0e-63, Sum P(6) = 6.0e-63
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 1065 AGAPSSVRKKFGSTVGSQLIKPLEGSSSNKTGEFNS 1100
A P+S +K V ++ P SS+ T E +S
Sbjct: 2691 AQTPTSTPEKPQELVSAEATAPSTSSSATSTPEGSS 2726
Score = 37 (18.1 bits), Expect = 3.2e-62, Sum P(6) = 3.2e-62
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 291 DPESLPKLDGPTRPFQRLKTPFRMPQSEESE 321
+P + K+ P QR K P+ P ++ E
Sbjct: 374 EPSQVLKVKPPPSVTQRNKQPWH-PDEDDEE 403
Score = 37 (18.1 bits), Expect = 6.4e-49, Sum P(6) = 6.4e-49
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 484 SAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
S ++L R A +SD G GS + + E + + +
Sbjct: 444 SMEELLQRYAGAYASDASAPGSGSSEEEDEDEVEANS 480
>UNIPROTKB|F1SSV0 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000045 "regulation of G1/S transition of mitotic cell
cycle" evidence=IEA] [GO:0071479 "cellular response to ionizing
radiation" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:FP015925 RefSeq:XP_003121636.1 UniGene:Ssc.45003
Ensembl:ENSSSCT00000005252 GeneID:100517567 KEGG:ssc:100517567
Uniprot:F1SSV0
Length = 1566
Score = 354 (129.7 bits), Expect = 6.2e-63, Sum P(5) = 6.2e-63
Identities = 62/138 (44%), Positives = 98/138 (71%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K+ + +L K QGHRVL+++Q +M+D+LE +++ + Y R+DG + + +R +
Sbjct: 1110 SGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDM 1169
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+ ++ N +D+F+F+L+T+ GGLG NLT A+ VI +D DWNP+ D QA +RA R+GQ + V
Sbjct: 1170 VADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1229
Query: 865 TVYRLITRGTIEEKVYHR 882
TVYRLI +GTIEE++ R
Sbjct: 1230 TVYRLICKGTIEERILQR 1247
Score = 257 (95.5 bits), Expect = 6.2e-63, Sum P(5) = 6.2e-63
Identities = 66/208 (31%), Positives = 108/208 (51%)
Query: 538 LLITTYEQLRLLGEKLLD-VEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPI 596
++IT+Y QL + K V+W Y VLDE +++ ++ + Q Q +R+++TG PI
Sbjct: 635 VVITSY-QLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPI 693
Query: 597 QNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLI 656
QN ++ELW+L F+ P F F+ I N S + + R ++L+
Sbjct: 694 QNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHA-ENKSAIDENQLSRLHMILK--- 749
Query: 657 MPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGID 716
P++LRR+K DV +L K E +++C LT Q+ +Y+A +E +L S S
Sbjct: 750 -PFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQ 808
Query: 717 ---------VM--RKICNHPDLLEREQS 733
VM RK+CNHP+L ER+++
Sbjct: 809 TTTSSLMNLVMQFRKVCNHPELFERQET 836
Score = 166 (63.5 bits), Expect = 6.2e-63, Sum P(5) = 6.2e-63
Identities = 36/95 (37%), Positives = 55/95 (57%)
Query: 387 TLEGGLKIPE-SIFNN-LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL 444
++ G IP+ +IFN L YQ G+ WL L+ Q GI+ DEMGLGKT+Q ++ L L
Sbjct: 510 SIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHL 569
Query: 445 -HFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHV 478
N++ P +++ P + L W +E ++ P F V
Sbjct: 570 AERENIWGPFLIISPASTLNNWHQEFTRFVPKFKV 604
Score = 71 (30.1 bits), Expect = 6.2e-63, Sum P(5) = 6.2e-63
Identities = 28/109 (25%), Positives = 52/109 (47%)
Query: 91 STKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSH 150
S++ D+ +D + E+D E+E+ + S + L + L + K L + K KEL
Sbjct: 135 SSEADSQSEDNEEEEEDDEEEEEE-LNLSREE--LHNMLRLHKYKKLHQNKYSKDKELQQ 191
Query: 151 FPKGITSKGI--EHDKFIQDLVKEEHR--PKRKSKEAQKPGKDRSKQQK 195
+ S G+ +D F + ++ H PK+K + +K K + K+ K
Sbjct: 192 YQ--YYSAGLLSTYDPFYE---QQRHLLGPKKKKFKEEKKLKAKLKKVK 235
Score = 43 (20.2 bits), Expect = 6.2e-63, Sum P(5) = 6.2e-63
Identities = 25/92 (27%), Positives = 34/92 (36%)
Query: 1065 AGAPSSVRKKFGSTVGS-QLIKPL-EGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRG 1122
AG S R + G GS K +G S T + AGA AG +S+ A
Sbjct: 1432 AGRGHSARSR-GRPKGSGSTAKGAGKGRSRKSTAGSAAAMAGAKAGAAAASAAAYAAYGY 1490
Query: 1123 NQENAVGAGLERQFEVASSSANVARFADTRTS 1154
N + A Q + A +A F + S
Sbjct: 1491 NVSKGISASSPLQTSLVRP-AGLADFGPSSAS 1521
Score = 41 (19.5 bits), Expect = 1.9e-08, Sum P(4) = 1.9e-08
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 671 QLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRN 710
Q + T + L C T E+R + RA SE+++++ N
Sbjct: 1225 QTKQVTVYRLICKGTIEERILQRA-KEKSEIQRMVISGGN 1263
Score = 38 (18.4 bits), Expect = 1.6e-59, Sum P(5) = 1.6e-59
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 51 DKSESIDPSSTSQEKLYNKLRAVEFE 76
D E + + S+E+L+N LR +++
Sbjct: 151 DDEEEEEELNLSREELHNMLRLHKYK 176
Score = 38 (18.4 bits), Expect = 4.2e-47, Sum P(4) = 4.2e-47
Identities = 12/51 (23%), Positives = 24/51 (47%)
Query: 467 REAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLS 517
+++ +W S LL D + + ++S D + + E + + E NLS
Sbjct: 120 KKSRRWLKSI---LLSDESSEAD-----SQSEDNEEEEEDDEEEEEELNLS 162
>ZFIN|ZDB-GENE-041014-72 [details] [associations]
symbol:ino80 "INO80 homolog (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
ZFIN:ZDB-GENE-041014-72 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX897725
HOGENOM:HOG000231795 HOVERGEN:HBG057875 OMA:KVIRKFW IPI:IPI00516098
UniGene:Dr.84310 ProteinModelPortal:Q5RGG8 STRING:Q5RGG8
InParanoid:Q5RGG8 Uniprot:Q5RGG8
Length = 1582
Score = 350 (128.3 bits), Expect = 7.1e-63, Sum P(5) = 7.1e-63
Identities = 61/138 (44%), Positives = 98/138 (71%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K+ + +L K QGHRVL+++Q +M+D+LE +++ + Y R+DG + + +R +
Sbjct: 1131 SGKLHTLDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDM 1190
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+ ++ + +D+F+F+L+T+ GGLG NLT A+ VI +D DWNP+ D QA +RA R+GQ + V
Sbjct: 1191 VADFQSRTDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1250
Query: 865 TVYRLITRGTIEEKVYHR 882
TVYRLI +GTIEE++ R
Sbjct: 1251 TVYRLICKGTIEERILQR 1268
Score = 260 (96.6 bits), Expect = 7.1e-63, Sum P(5) = 7.1e-63
Identities = 73/235 (31%), Positives = 114/235 (48%)
Query: 512 YEGNLSSRNP--KKWDLLINRVLRSESGLLITTYEQLRLLGEKLLD-VEWGYAVLDEGHR 568
Y GN R K W + ++IT+Y QL + K V+W Y VLDE
Sbjct: 599 YWGNPHDRKVIRKFWSQKTLYTQNAPFHVVITSY-QLVVQDVKYFQRVKWQYMVLDEAQA 657
Query: 569 IRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP 628
+++ + + Q Q +R+++TG PIQN ++ELW+L F+ P F F+
Sbjct: 658 LKSSTSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKD 717
Query: 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQ 688
I N S + + R ++L+ P++LRR+K DV +L K E + +C LT Q
Sbjct: 718 IESHA-ENKSAIDENQLSRLHMILK----PFMLRRIKKDVENELSDKIEILTYCQLTSRQ 772
Query: 689 RAVYRAFLASSEVEQILDGSR----------NSLYGIDVM-RKICNHPDLLEREQ 732
R +Y+A +E +L S +SL + + RK+CNHPDL ER++
Sbjct: 773 RLLYQALKNKISIEDLLQSSMGSAQQAHSTTSSLMNLVMQFRKVCNHPDLFERQE 827
Score = 170 (64.9 bits), Expect = 7.1e-63, Sum P(5) = 7.1e-63
Identities = 45/134 (33%), Positives = 69/134 (51%)
Query: 350 TRL--EENEDSRDSLDMSSYXXXXXXXXXXXXXXXPPFVTLEGGLKIPE-SIFNN-LFDY 405
TRL EE +DSR + + + P +++ G IP+ +IFN L Y
Sbjct: 467 TRLFDEEAKDSRCA-SLHAASMSGSGFGESYSLSNP---SIQAGEDIPQPTIFNGKLKGY 522
Query: 406 QKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVTLLRQ 464
Q G+ WL L+ Q GI+ DEMGLGKT+Q ++ L L N++ P +++ P + L
Sbjct: 523 QLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHLAERENIWGPFLIISPASTLNN 582
Query: 465 WKREAEKWYPSFHV 478
W +E ++ P F V
Sbjct: 583 WHQEFSRFVPKFKV 596
Score = 63 (27.2 bits), Expect = 7.1e-63, Sum P(5) = 7.1e-63
Identities = 22/94 (23%), Positives = 39/94 (41%)
Query: 102 DSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIE 161
D+T+ D D+ LQ L + L ++K +EL H+ T
Sbjct: 142 DTTDSDSDSDDSDFTMTREE---LQDMLRLHKFTRLHQSKFHSDRELQHYQHYSTGLLST 198
Query: 162 HDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQK 195
HD F + ++ H K K+ ++ K ++K +K
Sbjct: 199 HDPFYE---QQRHLLGLKKKKIKEEKKCKAKLKK 229
Score = 48 (22.0 bits), Expect = 7.1e-63, Sum P(5) = 7.1e-63
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 1016 MNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDD 1052
+ EEK +LEE +S+V +R + + + R DD
Sbjct: 1309 LRLRQEEKRQLEE-SSKVKERKRKREKYAERKRKEDD 1344
Score = 43 (20.2 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 20/83 (24%), Positives = 41/83 (49%)
Query: 671 QLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQ-ILDGSR---NSLYGIDVMRKICNHPD 726
Q + T + L C T E+R + RA SE+++ ++ G ++L +V+ + + +
Sbjct: 1246 QTKQVTVYRLICKGTIEERILQRA-KEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDEE 1304
Query: 727 LLEREQSCQIPDYGNPERSEKMK 749
L E++ + + E S K+K
Sbjct: 1305 L-EKKLRLRQEEKRQLEESSKVK 1326
>TAIR|locus:2150270 [details] [associations]
symbol:CHR23 "chromatin remodeling 23" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0004386 "helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP
binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006259 "DNA metabolic process" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007126 "meiosis"
evidence=RCA] [GO:0009640 "photomorphogenesis" evidence=RCA]
[GO:0010388 "cullin deneddylation" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0016571 "histone
methylation" evidence=RCA] [GO:0016579 "protein deubiquitination"
evidence=RCA] [GO:0031048 "chromatin silencing by small RNA"
evidence=RCA] [GO:0033044 "regulation of chromosome organization"
evidence=RCA] [GO:0045132 "meiotic chromosome segregation"
evidence=RCA] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002688 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K11647
OMA:WAPSISA IPI:IPI00536400 RefSeq:NP_197432.2 UniGene:At.43995
ProteinModelPortal:F4K128 SMR:F4K128 PRIDE:F4K128
EnsemblPlants:AT5G19310.1 GeneID:832051 KEGG:ath:AT5G19310
PhylomeDB:F4K128 Uniprot:F4K128
Length = 1064
Score = 563 (203.2 bits), Expect = 7.4e-63, Sum P(3) = 7.4e-63
Identities = 134/375 (35%), Positives = 207/375 (55%)
Query: 530 RVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRI 589
R+ + +LIT Y+ + L ++W Y ++DEGHR++N ++ K L T +RI
Sbjct: 479 RIAGGKFNVLITHYDLIMRDKAFLKKIDWNYMIVDEGHRLKNHECALA---KTLGTGYRI 535
Query: 590 ----IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTA 645
++TG PIQN L ELWSL +F+ P + FE F P G A+ + +
Sbjct: 536 KRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSIHNFEEWFNTPFAECGSASLTDEEELLI 595
Query: 646 YRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVE-QI 704
L +I P+LLRR K++V LP KT+ +L C ++ Q+ Y+ V
Sbjct: 596 INR---LHHVIRPFLLRRKKSEVEKFLPGKTQVILKCDMSAWQKLYYKQVTDVGRVGLHS 652
Query: 705 LDGSRNSLYGIDV-MRKICNHPDLLEREQ--SCQIPDYGNPERSEKMKVVAQVLKVWKDQ 761
+G SL + + +RK CNHP L C+ P+ S K +++ ++L K
Sbjct: 653 GNGKSKSLQNLTMQLRKCCNHPYLFVGADYNMCKKPEI--VRASGKFELLDRLLPKLKKA 710
Query: 762 GHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILT 820
GHR+LLF+Q +++D+LE +L + Y Y R+DG T QR L+ ++N S F+F+L+
Sbjct: 711 GHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFNEPDSPYFMFLLS 770
Query: 821 TKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVY 880
T+ GGLG NL A+ +IIFD DWNP D QA +RA RIGQK++V V+ L++ G+IEE +
Sbjct: 771 TRAGGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSIGSIEEVIL 830
Query: 881 HRQIYKHFLTNKILK 895
R K + K+++
Sbjct: 831 ERAKQKMGIDAKVIQ 845
Score = 152 (58.6 bits), Expect = 7.4e-63, Sum P(3) = 7.4e-63
Identities = 39/136 (28%), Positives = 62/136 (45%)
Query: 353 EENEDSRDSLDMSSYXXXXXXXXXXXXXXXPPFVTLEGGLKIPESIFNNLFDYQKVGVQW 412
+ N+DS D L+ P L+GG L YQ G+QW
Sbjct: 348 DNNDDSNDLLEGERQFNLAIHSIQEKVTKQPSL--LQGG---------ELRSYQLEGLQW 396
Query: 413 LWELHCQRAGGIIGDEMGLGKTIQVLSFLG-ALHFSNMYKPSIVVCPVTLLRQWKREAEK 471
+ L+ GI+ DEMGLGKTIQ ++ + L +++ P +++ P +L W+ E
Sbjct: 397 MVSLYNNDYNGILADEMGLGKTIQTIALIAYLLESKDLHGPHLILAPKAVLPNWENEFAL 456
Query: 472 WYPSFHVELLHDSAQD 487
W PS L+D +++
Sbjct: 457 WAPSISA-FLYDGSKE 471
Score = 57 (25.1 bits), Expect = 7.4e-63, Sum P(3) = 7.4e-63
Identities = 29/145 (20%), Positives = 57/145 (39%)
Query: 1018 AHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGS 1077
A EE+ + EQ + +R + ++R++ ++ VP W S T ++ + FGS
Sbjct: 888 ARTEEEFWMFEQMDE--ERRKKENYKTRLMEEKE---VPEWAYTSETQEDKTNAKNHFGS 942
Query: 1078 TVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQFE 1137
G + K E S+ + A S + S R R + + + G + +
Sbjct: 943 LTGKR--KRKEAVYSDSLSDLQWMKAMESEDEDASKVSQ-KRKRTDTKTRMSNGSKAEAV 999
Query: 1138 VASSSANVARFADTRTSRSSKNASD 1162
++ S + R S K + +
Sbjct: 1000 LSESDEEKEEEEEERKEESGKESEE 1024
Score = 45 (20.9 bits), Expect = 1.3e-61, Sum P(3) = 1.3e-61
Identities = 16/65 (24%), Positives = 32/65 (49%)
Query: 1013 DAIMNAHDEEKMRLEEQASQVAQRAAE--------ALRQSRMLRSRDDI--SVPTWTGKS 1062
+A+++ DEEK EE+ + + + +E + + ++ RSR + S P GK
Sbjct: 997 EAVLSESDEEKEEEEEERKEESGKESEEENEKPLHSWKTNKKKRSRYPVMTSSPNSRGKG 1056
Query: 1063 GTAGA 1067
+ G+
Sbjct: 1057 SSKGS 1061
>ASPGD|ASPL0000042729 [details] [associations]
symbol:AN2278 species:162425 "Emericella nidulans"
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194
SMART:SM00297 SMART:SM00490 SMART:SM00951 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 EMBL:BN001307
GO:GO:0004386 EMBL:AACD01000038 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
HOGENOM:HOG000172362 KO:K11786 OrthoDB:EOG4D565R RefSeq:XP_659882.1
ProteinModelPortal:Q5BB02 STRING:Q5BB02
EnsemblFungi:CADANIAT00008970 GeneID:2875521 KEGG:ani:AN2278.2
OMA:GSDHSSP Uniprot:Q5BB02
Length = 1407
Score = 583 (210.3 bits), Expect = 7.7e-63, Sum P(4) = 7.7e-63
Identities = 134/370 (36%), Positives = 208/370 (56%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRIIMTGAPI 596
+L+TTYE + L ++W + ++DEGHR++N +++S Q T +R+I+TG P+
Sbjct: 638 VLLTTYEYIIKDRPILSKIKWTHMIVDEGHRMKNTQSKLSSTLSQYYTSRYRLILTGTPL 697
Query: 597 QNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLI 656
QN L ELW+L +FV P + F+ F P G + L L ++
Sbjct: 698 QNNLPELWALLNFVLPNIFKSVKSFDEWFNTPFANTGGQDRMDLTEEEQLLVIRRLHKVL 757
Query: 657 MPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGS--RNSLYG 714
P+LLRR+K DV LP K E V+ C + Q + + LA+ + DG + + G
Sbjct: 758 RPFLLRRLKKDVEKDLPDKQERVIKCRFSALQAKLNKQ-LATHNKMVVSDGKGGKVGMRG 816
Query: 715 IDVM----RKICNHPDLLEREQSCQIPDYGNPE---RSE-KMKVVAQVLKVWKDQGHRVL 766
+ M RK+CNHP + E+ + P G + R+ K +++ ++L +K GHRVL
Sbjct: 817 LSNMLMQLRKLCNHPFVFEQVEDQVNPGRGTNDLIWRTAGKFELLDRILPKFKATGHRVL 876
Query: 767 LFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGG 825
+F Q Q+++I+E FL G +Y R+DG T R L+ +N S+ F F+L+T+ GG
Sbjct: 877 MFFQMTQIMNIMEDFLRLRGMKYLRLDGSTKSDDRSDLLKLFNAPDSEYFCFLLSTRAGG 936
Query: 826 LGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIY 885
LG NL A+ VIIFD DWNP D+QA++RA RIGQK +V + RLIT ++EEK+ R +
Sbjct: 937 LGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKNEVRILRLITSNSVEEKILERAQF 996
Query: 886 KHFLTNKILK 895
K + K+++
Sbjct: 997 KLDMDGKVIQ 1006
Score = 154 (59.3 bits), Expect = 7.7e-63, Sum P(4) = 7.7e-63
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLG-ALHFSNMYKPSIVVCPVT 460
L +YQ G+QW+ L+ GI+ DEMGLGKTIQ +S + + P +V+ P++
Sbjct: 537 LKEYQMKGLQWMISLYNNNLNGILADEMGLGKTIQTISLITHIIERKRNNGPFLVIVPLS 596
Query: 461 LLRQWKREAEKWYPS 475
L W E EKW PS
Sbjct: 597 TLTNWNLEFEKWAPS 611
Score = 49 (22.3 bits), Expect = 7.7e-63, Sum P(4) = 7.7e-63
Identities = 17/89 (19%), Positives = 40/89 (44%)
Query: 113 KSAVQASPNDMTLQHALTADRLKSLKKTKA---QLVKELSHFPK-GITSKGIEHDKFIQD 168
+S V + + L+ + L L K + Q+ E+ H+ G+T+ H + +
Sbjct: 291 QSDVATGDDSLKLKALIEYRMLNLLPKQRLLRKQIQHEMFHYDNLGMTANRATHRRMKKQ 350
Query: 169 LVKEEHRPKRKSKEAQKPGKDRSKQQKTV 197
++E ++ K+ + + R K+++ V
Sbjct: 351 SLREARITEKLEKQQRDARESREKRKQDV 379
Score = 44 (20.5 bits), Expect = 7.7e-51, Sum P(3) = 7.7e-51
Identities = 22/90 (24%), Positives = 37/90 (41%)
Query: 94 EDNDIDDGDSTEQDGRE--DEKSAVQASPNDMTLQHA-LTADRLKSLKKTKAQ-LVKELS 149
+D DI G E +GR D + ++T Q + L LK + Q ++ +
Sbjct: 494 DDEDIASGSDEEGEGRRKIDYYAVAHRIKEEITEQPSILVGGTLKEYQMKGLQWMISLYN 553
Query: 150 HFPKGITSKGIEHDKFIQDLVKEEHRPKRK 179
+ GI + + K IQ + H +RK
Sbjct: 554 NNLNGILADEMGLGKTIQTISLITHIIERK 583
Score = 39 (18.8 bits), Expect = 6.8e-51, Sum P(4) = 6.8e-51
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 497 SSDTDNDGEGSHDSDY 512
+S +D +GEG DY
Sbjct: 499 ASGSDEEGEGRRKIDY 514
Score = 38 (18.4 bits), Expect = 7.7e-63, Sum P(4) = 7.7e-63
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 56 IDPSSTSQEK---LYNKLRAVEFEIGAVASTV 84
ID +E+ LYN++ A + E+ A+ + +
Sbjct: 253 IDLEQVREEREVALYNRINARKAELAALPANI 284
Score = 37 (18.1 bits), Expect = 1.4e-61, Sum P(4) = 1.4e-61
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 94 EDNDIDDGDSTEQDGREDEK 113
E++D DD D + DE+
Sbjct: 486 EEHDFDDDDDEDIASGSDEE 505
>UNIPROTKB|J9NSS6 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
GeneTree:ENSGT00560000076896 EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000043290 Uniprot:J9NSS6
Length = 1379
Score = 565 (203.9 bits), Expect = 8.8e-63, Sum P(3) = 8.8e-63
Identities = 135/397 (34%), Positives = 225/397 (56%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEKLL-DVEWGYAVLDEGHRI 569
Y G+L SRN ++++ + ++ R + LITTYE L L + +L + W + +DE HR+
Sbjct: 564 YIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEIL-LKDKTVLGSINWAFLGVDEAHRL 622
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629
+N ++ + ++ HR+++TG P+QN L ELWSL F+ P K FE +
Sbjct: 623 KNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-- 680
Query: 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQR 689
G N Y+ L ++ P+LLRR+K DV LP K E +L ++ Q+
Sbjct: 681 ---GRENG--------YQS---LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQK 726
Query: 690 AVYRAFLASSEVEQILDGSRNSLYG-IDV---MRKICNH------PDLLEREQSCQIPDY 739
Y+ ++ + + + G+R S G +++ ++K CNH P+ ERE ++
Sbjct: 727 QYYK-WILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEVL-L 784
Query: 740 GNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
S K+ ++ ++L +++G+RVL+F+Q +MLDIL +L Y ++R+DG +
Sbjct: 785 SLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 844
Query: 800 QRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
R +D +N + S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA RI
Sbjct: 845 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 904
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
GQK+ V +YRL+T+GT+EE++ R K L + +++
Sbjct: 905 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQ 941
Score = 178 (67.7 bits), Expect = 8.8e-63, Sum P(3) = 8.8e-63
Identities = 36/78 (46%), Positives = 47/78 (60%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL C+ I+ DEMGLGKTIQ +SFL L H +Y P ++V P++
Sbjct: 484 LRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLS 543
Query: 461 LLRQWKREAEKWYPSFHV 478
L W+RE E W P +V
Sbjct: 544 TLTSWQREFEIWAPEINV 561
Score = 51 (23.0 bits), Expect = 1.0e-07, Sum P(3) = 1.0e-07
Identities = 31/143 (21%), Positives = 63/143 (44%)
Query: 1020 DEEKMRLEEQASQVAQRAAEALRQS--RMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGS 1077
D EK L + Q+ + AL++ + + +R+ ++ T + T+G + V +
Sbjct: 704 DVEKS-LPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGT-RGSTSGFLNIVMELKKC 761
Query: 1078 TVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIR--GNQENAVGAGLERQ 1135
LIKP E + + G+ S+GK++ +LL R+R GN+ + + + R
Sbjct: 762 CNHCYLIKPPE-ENERENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRV-LIFSQMVRM 819
Query: 1136 FEVASSSANVARFADTRTSRSSK 1158
++ + + + R S K
Sbjct: 820 LDILAEYLTIKHYPFQRLDGSIK 842
Score = 39 (18.8 bits), Expect = 3.0e-48, Sum P(3) = 3.0e-48
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 489 GFRKKRAKSSDTDNDGE 505
G RK++ S D D D E
Sbjct: 200 GKRKRQDSSDDDDEDDE 216
Score = 38 (18.4 bits), Expect = 2.0e-06, Sum P(3) = 2.0e-06
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 493 KRAKSSDTDNDGEGSHDS 510
K+A+++D+D+D E +
Sbjct: 1078 KKAQTNDSDSDTESKRQA 1095
Score = 37 (18.1 bits), Expect = 8.8e-63, Sum P(3) = 8.8e-63
Identities = 16/105 (15%), Positives = 43/105 (40%)
Query: 91 STKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQ-LVKELS 149
+++E + D G +E + D S + N + ++ +K+Q ++ E
Sbjct: 24 ASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAK 83
Query: 150 HFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQ 194
P + + K ++ + + +R ++ Q+P + K++
Sbjct: 84 EKPASKKERIADVKKMWEEY-PDVYGVRRSNRSRQEPSRFNIKEE 127
Score = 37 (18.1 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 16/72 (22%), Positives = 32/72 (44%)
Query: 482 HDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLIT 541
+DS D +++ +SS ++++ + S D D + R L+ +E I
Sbjct: 1083 NDSDSDTESKRQAQRSSASESETDDS-DDDKKPKRRGRPRSVRKDLVEGFTDAEIRRFIK 1141
Query: 542 TYEQLRLLGEKL 553
Y++ L E+L
Sbjct: 1142 AYKKFGLPLERL 1153
>DICTYBASE|DDB_G0285205 [details] [associations]
symbol:snf2a "SNF2-related protein SNF2a"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR017956
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00384
SMART:SM00490 dictyBase:DDB_G0285205 GO:GO:0005524 GO:GO:0003677
EMBL:AAFI02000075 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 KO:K11647 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 RefSeq:XP_638342.2
ProteinModelPortal:Q54NM0 STRING:Q54NM0 PRIDE:Q54NM0
EnsemblProtists:DDB0233441 GeneID:8624967 KEGG:ddi:DDB_G0285205
OMA:HASKHRV Uniprot:Q54NM0
Length = 1604
Score = 544 (196.6 bits), Expect = 1.1e-62, Sum P(3) = 1.1e-62
Identities = 130/372 (34%), Positives = 207/372 (55%)
Query: 538 LLITTYEQLRLLGEKLLD-VEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPI 596
++IT++E + + K L V W Y ++DEGHRI+N N+++S+ +Q + +R+++TG P+
Sbjct: 725 VVITSFEYI-IKDRKTLGRVHWIYIIIDEGHRIKNKNSKLSVQLRQYHSRNRLLLTGTPL 783
Query: 597 QNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVV--LRD 654
QN L ELW+L +F+ P F+ F P G + + V+ ++ L
Sbjct: 784 QNDLGELWALLNFLLPTIFNSADTFQNWFNAPFQAKG---KNLINVNEEESLIIINRLHQ 840
Query: 655 LIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYG 714
++ +LLRR+K+DV +QLP K E V+ C+++ Q A+YR+ L V I S+ G
Sbjct: 841 VLRFFLLRRLKSDVESQLPDKKEKVIKCNMSALQIAMYRS-LVEYGVLPIDPDSKEGRSG 899
Query: 715 ----------IDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHR 764
+ ++KICNHP L + E D S K + Q+L HR
Sbjct: 900 RLKMKGFNNIVKQLQKICNHPYLFKDEWDIN-EDL--IRTSGKFDTMDQILTKMHASKHR 956
Query: 765 VLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVF-IFILTTKV 823
VL+F Q ++++++E + + + R+DG T ++R L+ E+N F IF+L+T
Sbjct: 957 VLIFTQMTEVINLMEEYFSLKEWTFLRLDGSTKPEERAHLVVEWNRPDSPFWIFVLSTHA 1016
Query: 824 GGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQ 883
GGLG NL A+ VIIFD DWNP D+QA++R RIGQ V+V+RLI+ +IEEK+ R
Sbjct: 1017 GGLGMNLQTADTVIIFDSDWNPQMDLQAQDRCHRIGQTNSVSVFRLISANSIEEKILGRA 1076
Query: 884 IYKHFLTNKILK 895
K + KI++
Sbjct: 1077 TDKLEIDAKIIQ 1088
Score = 178 (67.7 bits), Expect = 1.1e-62, Sum P(3) = 1.1e-62
Identities = 33/87 (37%), Positives = 54/87 (62%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS-NMYKPSIVVCPVT 460
L +YQ G++WL L+ + GI+ DEMGLGKT+Q ++F+ L+ N+ +P +VV P++
Sbjct: 624 LKEYQVTGLEWLISLYTRNLNGILADEMGLGKTVQTIAFISFLYERMNVREPFLVVAPLS 683
Query: 461 LLRQWKREAEKWYPSFHVELLHDSAQD 487
+ W E +W P HV +++ QD
Sbjct: 684 TISNWVSEFARWSPKLHV-IVYKGKQD 709
Score = 62 (26.9 bits), Expect = 1.1e-62, Sum P(3) = 1.1e-62
Identities = 41/199 (20%), Positives = 78/199 (39%)
Query: 976 RRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDAI--MNAHDEEKMRLEEQASQV 1033
+++ K+ +N D +++ I NGI ++ N++ N++ + ++Q S
Sbjct: 1332 QQQEKQNHENNSDNENQDDIIQVDDHPTNGIENSSNNNNNDDNNSNGNSNQQQQQQQSNN 1391
Query: 1034 AQRAAEALR---QSRMLRSRDDIS--VPTWTGKSGTAGAPSSVRKKFGSTVGSQLIKPLE 1088
+ A + + R+ + I + GKS + PS + T S + ++
Sbjct: 1392 GETPTPAKKGRGRPRLSNNPTPIKRKLDDLKGKSDDSPKPSK-KSLMSETETSDNEQSMD 1450
Query: 1089 -GSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQFEVASSSANVAR 1147
G +SN N+ + + ++S G+QEN G G VAS++A
Sbjct: 1451 SGDNSNNNNNNNNSNNNNNNNEKNNNSNGEPSENGSQENVNGNG-----NVASTAATNGT 1505
Query: 1148 FADTRTSRSSKNASDVQPE 1166
T R K PE
Sbjct: 1506 SVHTPGKRGRKKKIRPNPE 1524
Score = 46 (21.3 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 497 SSDTDNDGEGSHDSDYEGNLSSRN 520
SSD + D EG D + N+++ N
Sbjct: 1267 SSDDELDDEGISSDDDDNNINNNN 1290
Score = 43 (20.2 bits), Expect = 1.1e-60, Sum P(3) = 1.1e-60
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 965 DKENNLEIGSSRRKGKEK 982
DKEN E + + KG EK
Sbjct: 1531 DKENENENENEKEKGNEK 1548
Score = 43 (20.2 bits), Expect = 4.8e-60, Sum P(4) = 4.8e-60
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 965 DKENNLEIGSSRRKGKEKVDNIGDEVDEETNILK 998
D +NN+ ++ K +N D DEET ++
Sbjct: 1281 DDDNNINNNNNNNDNNNKNNNNND--DEETGAIQ 1312
Score = 40 (19.1 bits), Expect = 4.8e-60, Sum P(4) = 4.8e-60
Identities = 14/56 (25%), Positives = 26/56 (46%)
Query: 1017 NAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTA-GAPSSV 1071
N DEEK + +E ++ + + + S + T + +GT+ G+ SSV
Sbjct: 1522 NPEDEEKDKDKENENENENEKEKGNEKDKDPTSTTSPTTTTTSTSAGTSSGSSSSV 1577
Score = 38 (18.4 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 493 KRAKSSDTD-NDGEGSHDSDYEGNLSSRN 520
K++ S+T+ +D E S DS N ++ N
Sbjct: 1433 KKSLMSETETSDNEQSMDSGDNSNNNNNN 1461
>UNIPROTKB|F1PKX5 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000045 "regulation of G1/S transition of
mitotic cell cycle" evidence=IEA] [GO:0071479 "cellular response to
ionizing radiation" evidence=IEA] [GO:0070914 "UV-damage excision
repair" evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0043014 "alpha-tubulin
binding" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0030307
"positive regulation of cell growth" evidence=IEA] [GO:0016887
"ATPase activity" evidence=IEA] [GO:0010571 "positive regulation of
DNA replication involved in S phase" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0030307
GO:GO:0051225 GO:GO:0003677 GO:GO:0045944 GO:GO:0016887
GO:GO:0006338 GO:GO:0000070 GO:GO:0031011 GO:GO:0000724
GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914 GO:GO:2000045
GO:GO:0010571 KO:K11665 CTD:54617 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AAEX03016071 RefSeq:XP_849183.1
Ensembl:ENSCAFT00000015097 GeneID:478262 KEGG:cfa:478262
Uniprot:F1PKX5
Length = 1560
Score = 354 (129.7 bits), Expect = 1.2e-62, Sum P(5) = 1.2e-62
Identities = 62/138 (44%), Positives = 98/138 (71%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K+ + +L K QGHRVL+++Q +M+D+LE +++ + Y R+DG + + +R +
Sbjct: 1104 SGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDM 1163
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+ ++ N +D+F+F+L+T+ GGLG NLT A+ VI +D DWNP+ D QA +RA R+GQ + V
Sbjct: 1164 VADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1223
Query: 865 TVYRLITRGTIEEKVYHR 882
TVYRLI +GTIEE++ R
Sbjct: 1224 TVYRLICKGTIEERILQR 1241
Score = 257 (95.5 bits), Expect = 1.2e-62, Sum P(5) = 1.2e-62
Identities = 66/208 (31%), Positives = 108/208 (51%)
Query: 538 LLITTYEQLRLLGEKLLD-VEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPI 596
++IT+Y QL + K V+W Y VLDE +++ ++ + Q Q +R+++TG PI
Sbjct: 629 VVITSY-QLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPI 687
Query: 597 QNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLI 656
QN ++ELW+L F+ P F F+ I N S + + R ++L+
Sbjct: 688 QNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHA-ENKSAIDENQLSRLHMILK--- 743
Query: 657 MPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGID 716
P++LRR+K DV +L K E +++C LT Q+ +Y+A +E +L S S
Sbjct: 744 -PFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQ 802
Query: 717 ---------VM--RKICNHPDLLEREQS 733
VM RK+CNHP+L ER+++
Sbjct: 803 TTTSSLMNLVMQFRKVCNHPELFERQET 830
Score = 166 (63.5 bits), Expect = 1.2e-62, Sum P(5) = 1.2e-62
Identities = 36/95 (37%), Positives = 55/95 (57%)
Query: 387 TLEGGLKIPE-SIFNN-LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL 444
++ G IP+ +IFN L YQ G+ WL L+ Q GI+ DEMGLGKT+Q ++ L L
Sbjct: 504 SIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHL 563
Query: 445 -HFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHV 478
N++ P +++ P + L W +E ++ P F V
Sbjct: 564 AERENIWGPFLIISPASTLNNWHQEFTRFVPKFKV 598
Score = 68 (29.0 bits), Expect = 1.2e-62, Sum P(5) = 1.2e-62
Identities = 26/104 (25%), Positives = 48/104 (46%)
Query: 96 NDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGI 155
++ + DS +D E+E+ + S + L + L + K L + K KEL +
Sbjct: 133 DESSEADSQSEDNEEEEEEELHLSREE--LHNMLRLHKYKKLHQNKYSKDKELQQYQ--Y 188
Query: 156 TSKGI--EHDKFIQDLVKEEHR--PKRKSKEAQKPGKDRSKQQK 195
S G+ +D F + ++ H PK+K + +K K + K+ K
Sbjct: 189 YSAGLLSTYDPFYE---QQRHLLGPKKKKFKEEKKLKAKLKKVK 229
Score = 43 (20.2 bits), Expect = 1.2e-62, Sum P(5) = 1.2e-62
Identities = 25/92 (27%), Positives = 34/92 (36%)
Query: 1065 AGAPSSVRKKFGSTVGS-QLIKPL-EGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRG 1122
AG S R + G GS K +G S T + AGA AG +S+ A
Sbjct: 1426 AGRGHSARSR-GRPKGSGSTAKGAGKGRSRKSTAGSAAAMAGAKAGAAAASAAAYAAYGY 1484
Query: 1123 NQENAVGAGLERQFEVASSSANVARFADTRTS 1154
N + A Q + A +A F + S
Sbjct: 1485 NVSKGISASSPLQTSLVRP-AGLADFGPSSAS 1515
Score = 41 (19.5 bits), Expect = 3.7e-08, Sum P(4) = 3.7e-08
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 671 QLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRN 710
Q + T + L C T E+R + RA SE+++++ N
Sbjct: 1219 QTKQVTVYRLICKGTIEERILQRA-KEKSEIQRMVISGGN 1257
>POMBASE|SPAC1783.05 [details] [associations]
symbol:hrp1 "ATP-dependent DNA helicase Hrp1"
species:4896 "Schizosaccharomyces pombe" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0000779 "condensed chromosome, centromeric
region" evidence=IDA] [GO:0000790 "nuclear chromatin" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISM] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=IMP] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=IMP] [GO:0007076 "mitotic chromosome
condensation" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0016592 "mediator complex"
evidence=IPI] [GO:0030466 "chromatin silencing at silent
mating-type cassette" evidence=IMP] [GO:0030702 "chromatin
silencing at centromere" evidence=IMP] [GO:0035067 "negative
regulation of histone acetylation" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0048096 "chromatin-mediated maintenance
of transcription" evidence=TAS] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 PomBase:SPAC1783.05 Pfam:PF00385 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944
GO:GO:0030466 GO:GO:0000122 GO:GO:0000790 GO:GO:0030702
GO:GO:0004003 GO:GO:0007076 GO:GO:0048096 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000779 GO:GO:0035067 InterPro:IPR023780
PROSITE:PS00598 GO:GO:0016592 GO:GO:0006369 KO:K11367
HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB EMBL:X99021 EMBL:AB027852
PIR:T43334 PIR:T50107 RefSeq:NP_593660.1 ProteinModelPortal:Q9US25
MINT:MINT-4979817 STRING:Q9US25 EnsemblFungi:SPAC1783.05.1
GeneID:2542363 KEGG:spo:SPAC1783.05 OMA:VERVIKW NextBio:20803422
GO:GO:0060303 Uniprot:Q9US25
Length = 1373
Score = 566 (204.3 bits), Expect = 2.2e-62, Sum P(3) = 2.2e-62
Identities = 143/400 (35%), Positives = 219/400 (54%)
Query: 512 YEGNLSSR-NPKKWDLLINRVLRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRI 569
Y GN SR N ++++ ++ R + +L+TTYE + ++L ++ W Y +DE HR+
Sbjct: 470 YTGNTESRANIREYEFYLSTNSRKLKFNILLTTYEYILKDKQELNNIRWQYLAIDEAHRL 529
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629
+N + + Q +T +R+++TG P+QN L EL SL +F+ PGK + E F P
Sbjct: 530 KNSESSLYETLSQFRTANRLLITGTPLQNNLKELASLVNFLMPGKFYIRD--ELNFDQP- 586
Query: 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQR 689
NA R L++ + P++LRR+K DV LP K+E +L L++ Q
Sbjct: 587 ------NAEQ------ERDIRDLQERLQPFILRRLKKDVEKSLPSKSERILRVELSDMQT 634
Query: 690 AVYRAFLASS--EVEQILDG-SRNSLYGIDV-MRKICNHPDL---------LEREQSCQI 736
Y+ L + + DG + SL I V ++K+ NHP L + R+ + +
Sbjct: 635 EWYKNILTKNYRALTGHTDGRGQLSLLNIVVELKKVSNHPYLFPGAAEKWMMGRKMTRED 694
Query: 737 PDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLT 796
G S KM ++ ++L+ K GHRVL+F+Q +ML+IL ++ GY Y+R+DG
Sbjct: 695 TLRGIIMNSGKMVLLDKLLQRLKHDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTI 754
Query: 797 PVKQRMALIDEYN--NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARER 854
P R ID +N +S D F+F+L+T+ GGLG NL A+ VIIFD DWNP D+QA R
Sbjct: 755 PASVRRVSIDHFNAPDSPD-FVFLLSTRAGGLGINLNTADTVIIFDSDWNPQADLQAMAR 813
Query: 855 AWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL 894
A RIGQK V VYR +++ T+EE + R K L I+
Sbjct: 814 AHRIGQKNHVNVYRFLSKDTVEEDILERARRKMILEYAII 853
Score = 149 (57.5 bits), Expect = 2.2e-62, Sum P(3) = 2.2e-62
Identities = 33/97 (34%), Positives = 50/97 (51%)
Query: 383 PPFVTLEGGLKIPESIFNN-LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFL 441
PP+ LE K P I + D+Q G+ W+ L + GI+ DEMGLGKT+Q + FL
Sbjct: 373 PPYRKLE---KQPSYIKGGEIRDFQLTGINWMAYLWHRNENGILADEMGLGKTVQTVCFL 429
Query: 442 GAL-HFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFH 477
L H + P ++V P++ + W+ W P +
Sbjct: 430 SYLVHSLKQHGPFLIVVPLSTVPAWQETLANWTPDLN 466
Score = 61 (26.5 bits), Expect = 2.2e-62, Sum P(3) = 2.2e-62
Identities = 30/102 (29%), Positives = 48/102 (47%)
Query: 967 EN-NLEIGSSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSA-MNHDAIMNAHDEEKM 1024
EN NL+ S + ++ +++G LK F+ + +N D I+ +EE
Sbjct: 896 ENMNLDDILSHAEDRDSSNDVGGASMGGEEFLKQ-FEVTDYKAEDLNWDDIIP--EEEME 952
Query: 1025 RLEEQASQVA-QRAAEALRQSRMLRSRD-DISVPTWTGKSGT 1064
R+EE+ +A QRA E R+ R R+ D P+ T K T
Sbjct: 953 RIEEEERMLAAQRAKEEERERREEEERENDEDHPSRTYKRTT 994
Score = 44 (20.5 bits), Expect = 1.3e-60, Sum P(3) = 1.3e-60
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 975 SRRKGKEKVDNIGDEVDEETN 995
S K KE+VD++ E E N
Sbjct: 1325 SNEKAKEEVDHVKSENGESVN 1345
Score = 44 (20.5 bits), Expect = 1.3e-60, Sum P(3) = 1.3e-60
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 968 NNLEIGSSRRKGKEKVDNIGDEVDEETNI 996
+N + S +K KE+ N GDE E +
Sbjct: 1237 SNTKKSSRTKKKKEEETNRGDETSPEGTV 1265
Score = 40 (19.1 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 17/88 (19%), Positives = 35/88 (39%)
Query: 465 WKREAEKW---YPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNP 521
+K E W P +E + + + L ++ + + + + E +D D+ R
Sbjct: 935 YKAEDLNWDDIIPEEEMERIEEEERMLAAQRAKEEERERREEEERENDEDHPSRTYKRTT 994
Query: 522 KKWDLLINRVLRSESGLLITTYEQLRLL 549
K + R R E + +++RLL
Sbjct: 995 KS---ITKRQQRREE---MVREKEIRLL 1016
>UNIPROTKB|O14647 [details] [associations]
symbol:CHD2 "Chromodomain-helicase-DNA-binding protein 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0004003 EMBL:CH471101
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
EMBL:AF006514 EMBL:BT007050 EMBL:FJ515838 EMBL:AC013394
EMBL:BC007347 EMBL:CR978407 IPI:IPI00023109 IPI:IPI00815893
RefSeq:NP_001036037.1 RefSeq:NP_001262.3 UniGene:Hs.220864
ProteinModelPortal:O14647 SMR:O14647 IntAct:O14647 STRING:O14647
PhosphoSite:O14647 PaxDb:O14647 PRIDE:O14647 DNASU:1106
Ensembl:ENST00000394196 Ensembl:ENST00000420239
Ensembl:ENST00000557381 GeneID:1106 KEGG:hsa:1106 UCSC:uc002bso.1
UCSC:uc002bsp.3 CTD:1106 GeneCards:GC15P093533 HGNC:HGNC:1917
MIM:602119 neXtProt:NX_O14647 PharmGKB:PA26453 InParanoid:O14647
OMA:AHSWCKN OrthoDB:EOG4QRH36 ChiTaRS:CHD2 GenomeRNAi:1106
NextBio:4584 ArrayExpress:O14647 Bgee:O14647 CleanEx:HS_CHD2
Genevestigator:O14647 GermOnline:ENSG00000173575 Uniprot:O14647
Length = 1828
Score = 566 (204.3 bits), Expect = 2.7e-62, Sum P(3) = 2.7e-62
Identities = 136/397 (34%), Positives = 225/397 (56%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEKLL-DVEWGYAVLDEGHRI 569
Y G+L SRN ++++ + ++ R + LITTYE L L + +L + W + +DE HR+
Sbjct: 564 YIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEIL-LKDKTVLGSINWAFLGVDEAHRL 622
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629
+N ++ + ++ HR+++TG P+QN L ELWSL F+ P K FE +
Sbjct: 623 KNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-- 680
Query: 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQR 689
G N Y+ L ++ P+LLRR+K DV LP K E +L ++ Q+
Sbjct: 681 ---GRENG--------YQS---LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQK 726
Query: 690 AVYRAFLASSEVEQILDGSRNSLYG-IDV---MRKICNH------PDLLEREQSCQIPDY 739
Y+ ++ + + + G+R S G +++ ++K CNH P+ ERE +I
Sbjct: 727 QYYK-WILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEIL-L 784
Query: 740 GNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
S K+ ++ ++L +++G+RVL+F+Q +MLDIL +L Y ++R+DG +
Sbjct: 785 SLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 844
Query: 800 QRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
R +D +N + S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA RI
Sbjct: 845 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 904
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
GQK+ V +YRL+T+GT+EE++ R K L + +++
Sbjct: 905 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQ 941
Score = 179 (68.1 bits), Expect = 2.7e-62, Sum P(3) = 2.7e-62
Identities = 36/78 (46%), Positives = 47/78 (60%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL C+ I+ DEMGLGKTIQ +SFL L H +Y P ++V P++
Sbjct: 484 LRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLS 543
Query: 461 LLRQWKREAEKWYPSFHV 478
L W+RE E W P +V
Sbjct: 544 TLTSWQREFEIWAPEINV 561
Score = 51 (23.0 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 31/143 (21%), Positives = 63/143 (44%)
Query: 1020 DEEKMRLEEQASQVAQRAAEALRQS--RMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGS 1077
D EK L + Q+ + AL++ + + +R+ ++ T + T+G + V +
Sbjct: 704 DVEKS-LPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGT-RGSTSGFLNIVMELKKC 761
Query: 1078 TVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIR--GNQENAVGAGLERQ 1135
LIKP E + + G+ S+GK++ +LL R+R GN+ + + + R
Sbjct: 762 CNHCYLIKPPE-ENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRV-LIFSQMVRM 819
Query: 1136 FEVASSSANVARFADTRTSRSSK 1158
++ + + + R S K
Sbjct: 820 LDILAEYLTIKHYPFQRLDGSIK 842
Score = 45 (20.9 bits), Expect = 8.1e-07, Sum P(3) = 8.1e-07
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 474 PSFHVELLHDSAQDLGFRKKRAKSSDTDN-DGEGSHDSDYEGNLSSRNPK 522
PS E+ D + +KK+ K + +N + + S D EG+ + K
Sbjct: 1372 PSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKSK 1421
Score = 40 (19.1 bits), Expect = 2.5e-06, Sum P(3) = 2.5e-06
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 482 HDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLIT 541
+DS D +++ +SS ++++ E S D D + R L+ +E I
Sbjct: 1083 NDSDSDTESKRQAQRSSASESETEDS-DDDKKPKRRGRPRSVRKDLVEGFTDAEIRRFIK 1141
Query: 542 TYEQLRLLGEKL 553
Y++ L E+L
Sbjct: 1142 AYKKFGLPLERL 1153
Score = 39 (18.8 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 489 GFRKKRAKSSDTDNDGE 505
G RKK+ S + D+D E
Sbjct: 200 GKRKKQDSSDEDDDDDE 216
Score = 38 (18.4 bits), Expect = 4.0e-06, Sum P(3) = 4.0e-06
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 493 KRAKSSDTDNDGEGSHDS 510
K+A+++D+D+D E +
Sbjct: 1078 KKAQTNDSDSDTESKRQA 1095
Score = 37 (18.1 bits), Expect = 2.7e-62, Sum P(3) = 2.7e-62
Identities = 16/105 (15%), Positives = 43/105 (40%)
Query: 91 STKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQ-LVKELS 149
+++E + D G +E + D S + N + ++ +K+Q ++ E
Sbjct: 24 ASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAK 83
Query: 150 HFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQ 194
P + + K ++ + + +R ++ Q+P + K++
Sbjct: 84 EKPASKKERIADVKKMWEEY-PDVYGVRRSNRSRQEPSRFNIKEE 127
>UNIPROTKB|E2R5Z7 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:AAEX03002279 EMBL:AAEX03002280 Ensembl:ENSCAFT00000017614
NextBio:20854276 Uniprot:E2R5Z7
Length = 1831
Score = 565 (203.9 bits), Expect = 2.8e-62, Sum P(3) = 2.8e-62
Identities = 135/397 (34%), Positives = 225/397 (56%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEKLL-DVEWGYAVLDEGHRI 569
Y G+L SRN ++++ + ++ R + LITTYE L L + +L + W + +DE HR+
Sbjct: 567 YIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEIL-LKDKTVLGSINWAFLGVDEAHRL 625
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629
+N ++ + ++ HR+++TG P+QN L ELWSL F+ P K FE +
Sbjct: 626 KNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-- 683
Query: 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQR 689
G N Y+ L ++ P+LLRR+K DV LP K E +L ++ Q+
Sbjct: 684 ---GRENG--------YQS---LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQK 729
Query: 690 AVYRAFLASSEVEQILDGSRNSLYG-IDV---MRKICNH------PDLLEREQSCQIPDY 739
Y+ ++ + + + G+R S G +++ ++K CNH P+ ERE ++
Sbjct: 730 QYYK-WILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEVL-L 787
Query: 740 GNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
S K+ ++ ++L +++G+RVL+F+Q +MLDIL +L Y ++R+DG +
Sbjct: 788 SLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 847
Query: 800 QRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
R +D +N + S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA RI
Sbjct: 848 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 907
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
GQK+ V +YRL+T+GT+EE++ R K L + +++
Sbjct: 908 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQ 944
Score = 178 (67.7 bits), Expect = 2.8e-62, Sum P(3) = 2.8e-62
Identities = 36/78 (46%), Positives = 47/78 (60%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL C+ I+ DEMGLGKTIQ +SFL L H +Y P ++V P++
Sbjct: 487 LRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLS 546
Query: 461 LLRQWKREAEKWYPSFHV 478
L W+RE E W P +V
Sbjct: 547 TLTSWQREFEIWAPEINV 564
Score = 51 (23.0 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 31/143 (21%), Positives = 63/143 (44%)
Query: 1020 DEEKMRLEEQASQVAQRAAEALRQS--RMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGS 1077
D EK L + Q+ + AL++ + + +R+ ++ T + T+G + V +
Sbjct: 707 DVEKS-LPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGT-RGSTSGFLNIVMELKKC 764
Query: 1078 TVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIR--GNQENAVGAGLERQ 1135
LIKP E + + G+ S+GK++ +LL R+R GN+ + + + R
Sbjct: 765 CNHCYLIKPPE-ENERENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRV-LIFSQMVRM 822
Query: 1136 FEVASSSANVARFADTRTSRSSK 1158
++ + + + R S K
Sbjct: 823 LDILAEYLTIKHYPFQRLDGSIK 845
Score = 45 (20.9 bits), Expect = 6.5e-07, Sum P(3) = 6.5e-07
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 474 PSFHVELLHDSAQDLGFRKKRAKSSDTDN-DGEGSHDSDYEGNLSSRNPK 522
PS E+ D + +KK+ K + +N + + S D EG+ + K
Sbjct: 1376 PSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKSK 1425
Score = 39 (18.8 bits), Expect = 2.8e-62, Sum P(3) = 2.8e-62
Identities = 17/110 (15%), Positives = 45/110 (40%)
Query: 86 HLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQ-L 144
+L +++E + D G +E + D S + N + ++ +K+Q +
Sbjct: 19 NLSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPV 78
Query: 145 VKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQ 194
+ E P + + K ++ + + +R ++ Q+P + K++
Sbjct: 79 LPEAKEKPASKKERIADVKKMWEEY-PDVYGVRRSNRSRQEPSRFNIKEE 127
Score = 39 (18.8 bits), Expect = 9.4e-48, Sum P(3) = 9.4e-48
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 489 GFRKKRAKSSDTDNDGE 505
G RK++ S D D D E
Sbjct: 200 GKRKRQDSSDDDDEDDE 216
Score = 38 (18.4 bits), Expect = 1.8e-05, Sum P(4) = 1.8e-05
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 493 KRAKSSDTDNDGEGSHDS 510
K+A+++D+D+D E +
Sbjct: 1081 KKAQTNDSDSDTESKRQA 1098
Score = 38 (18.4 bits), Expect = 1.8e-05, Sum P(4) = 1.8e-05
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 539 LITTYEQLRLLGEKLLDVE 557
LI T +L+L +K+L VE
Sbjct: 1286 LIKTDPELKLTDKKILPVE 1304
Score = 37 (18.1 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 16/72 (22%), Positives = 32/72 (44%)
Query: 482 HDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLIT 541
+DS D +++ +SS ++++ + S D D + R L+ +E I
Sbjct: 1086 NDSDSDTESKRQAQRSSASESETDDS-DDDKKPKRRGRPRSVRKDLVEGFTDAEIRRFIK 1144
Query: 542 TYEQLRLLGEKL 553
Y++ L E+L
Sbjct: 1145 AYKKFGLPLERL 1156
>UNIPROTKB|P28370 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0031491 "nucleosome binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016589 "NURF complex" evidence=IDA]
[GO:0036310 "annealing helicase activity" evidence=IDA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA] [GO:0090537
"CERF complex" evidence=IDA] [GO:0030182 "neuron differentiation"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007420 "brain development" evidence=IMP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0006351 "transcription, DNA-dependent"
evidence=IMP] [GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044
GO:GO:0016589 GO:GO:0036310 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:M88163 EMBL:M89907 EMBL:AL022577 EMBL:BC117447
IPI:IPI00216046 IPI:IPI00646130 PIR:S35457 PIR:S35458
RefSeq:NP_003060.2 RefSeq:NP_620604.2 UniGene:Hs.152292
ProteinModelPortal:P28370 SMR:P28370 IntAct:P28370
MINT:MINT-2802155 STRING:P28370 PhosphoSite:P28370 DMDM:115311627
PaxDb:P28370 PRIDE:P28370 Ensembl:ENST00000371121
Ensembl:ENST00000371122 Ensembl:ENST00000371123 GeneID:6594
KEGG:hsa:6594 UCSC:uc004eun.4 UCSC:uc004eup.4 CTD:6594
GeneCards:GC0XM128580 HGNC:HGNC:11097 HPA:HPA003335 MIM:300012
neXtProt:NX_P28370 PharmGKB:PA35947 HOVERGEN:HBG056329
InParanoid:P28370 KO:K11727 OMA:PMSQKRK PhylomeDB:P28370
GenomeRNAi:6594 NextBio:25645 ArrayExpress:P28370 Bgee:P28370
CleanEx:HS_SMARCA1 Genevestigator:P28370 GermOnline:ENSG00000102038
Uniprot:P28370
Length = 1054
Score = 550 (198.7 bits), Expect = 2.9e-62, Sum P(4) = 2.9e-62
Identities = 141/405 (34%), Positives = 223/405 (55%)
Query: 529 NRVLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV 586
+ ++ E + +T+YE + + EK + W Y V+DE HRI+N +++S + ++ ++
Sbjct: 276 DEMMPGEWDVCVTSYEMV--IKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKST 333
Query: 587 HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAY 646
+R+++TG P+QN L ELW+L +F+ P F++ F +G
Sbjct: 334 NRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQ--------KLVE 385
Query: 647 RCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQI-L 705
R VL+ P+LLRR+K DV LP K E ++ L++ QR Y L +++ +
Sbjct: 386 RLHAVLK----PFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMK-DIDVLNS 440
Query: 706 DGSRNSLYGIDVM---RKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVW 758
G + + ++++ RK CNHP L + + P Y E S KM V+ ++L
Sbjct: 441 SGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG--PPYTTDEHIVSNSGKMVVLDKLLAKL 498
Query: 759 KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQR------------MALID 806
K+QG RVL+F+Q ++LDILE + + GYEY R+DG TP ++R I+
Sbjct: 499 KEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIE 558
Query: 807 EYN--NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+N NSS FIF+L+T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQK+ V
Sbjct: 559 AFNAPNSSK-FIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPV 617
Query: 865 TVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMK 909
V+RLIT T+EE++ R K L + ++ QQ R ++ K
Sbjct: 618 RVFRLITDNTVEERIVERAEIKLRLDSIVI---QQGRLIDQQSNK 659
Score = 172 (65.6 bits), Expect = 2.9e-62, Sum P(4) = 2.9e-62
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL L+ GI+ DEMGLGKT+Q ++ LG L H+ N+ P +V+ P +
Sbjct: 183 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 242
Query: 461 LLRQWKREAEKWYPSFHV 478
L W E ++W PS V
Sbjct: 243 TLHNWMNEFKRWVPSLRV 260
Score = 49 (22.3 bits), Expect = 5.7e-08, Sum P(4) = 5.7e-08
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QR ++ MKD+ LN G NI QL + N
Sbjct: 423 QREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCN 461
Score = 44 (20.5 bits), Expect = 2.9e-62, Sum P(4) = 2.9e-62
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 244 QQPGPSNKQNVPDEQEARSNDPFSASVDRALRMMSE---------AAQARPSTKLLDPES 294
+QPGPS Q +E A + +A+ ++ + + AA+A S K +DPE
Sbjct: 27 EQPGPSTSQ---EEGAAAAATEATAATEKGEKKKEKNVSSFQLKLAAKAPKSEKEMDPEY 83
Query: 295 LPKL 298
K+
Sbjct: 84 EEKM 87
Score = 43 (20.2 bits), Expect = 2.9e-62, Sum P(4) = 2.9e-62
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVD 991
++ N I ++ + G++ +DNI EV+
Sbjct: 863 RDFNQFIKANEKYGRDDIDNIAREVE 888
>UNIPROTKB|F1SA77 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:CT954235 EMBL:CU466964 Ensembl:ENSSSCT00000002524
Uniprot:F1SA77
Length = 1831
Score = 566 (204.3 bits), Expect = 3.5e-62, Sum P(3) = 3.5e-62
Identities = 136/397 (34%), Positives = 225/397 (56%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEKLL-DVEWGYAVLDEGHRI 569
Y G+L SRN ++++ + ++ R + LITTYE L L + +L + W + +DE HR+
Sbjct: 566 YIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEIL-LKDKTVLGSINWAFLGVDEAHRL 624
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629
+N ++ + ++ HR+++TG P+QN L ELWSL F+ P K FE +
Sbjct: 625 KNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-- 682
Query: 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQR 689
G N Y+ L ++ P+LLRR+K DV LP K E +L ++ Q+
Sbjct: 683 ---GRENG--------YQS---LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQK 728
Query: 690 AVYRAFLASSEVEQILDGSRNSLYG-IDV---MRKICNH------PDLLEREQSCQIPDY 739
Y+ ++ + + + G+R S G +++ ++K CNH P+ ERE +I
Sbjct: 729 QYYK-WILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEIL-L 786
Query: 740 GNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
S K+ ++ ++L +++G+RVL+F+Q +MLDIL +L Y ++R+DG +
Sbjct: 787 SLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 846
Query: 800 QRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
R +D +N + S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA RI
Sbjct: 847 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 906
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
GQK+ V +YRL+T+GT+EE++ R K L + +++
Sbjct: 907 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQ 943
Score = 178 (67.7 bits), Expect = 3.5e-62, Sum P(3) = 3.5e-62
Identities = 36/78 (46%), Positives = 47/78 (60%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL C+ I+ DEMGLGKTIQ +SFL L H +Y P ++V P++
Sbjct: 486 LRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLS 545
Query: 461 LLRQWKREAEKWYPSFHV 478
L W+RE E W P +V
Sbjct: 546 TLTSWQREFEIWAPEINV 563
Score = 51 (23.0 bits), Expect = 2.6e-07, Sum P(3) = 2.6e-07
Identities = 31/143 (21%), Positives = 63/143 (44%)
Query: 1020 DEEKMRLEEQASQVAQRAAEALRQS--RMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGS 1077
D EK L + Q+ + AL++ + + +R+ ++ T + T+G + V +
Sbjct: 706 DVEKS-LPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGT-RGSTSGFLNIVMELKKC 763
Query: 1078 TVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIR--GNQENAVGAGLERQ 1135
LIKP E + + G+ S+GK++ +LL R+R GN+ + + + R
Sbjct: 764 CNHCYLIKPPE-ENERENGQEILLSLIRSSGKLILLDKLLTRLRERGNRV-LIFSQMVRM 821
Query: 1136 FEVASSSANVARFADTRTSRSSK 1158
++ + + + R S K
Sbjct: 822 LDILAEYLTIKHYPFQRLDGSIK 844
Score = 45 (20.9 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 474 PSFHVELLHDSAQDLGFRKKRAKSSDTDN-DGEGSHDSDYEGNLSSRNPK 522
PS E+ D + +KK+ K + +N + + S D EG+ + K
Sbjct: 1375 PSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKSK 1424
Score = 42 (19.8 bits), Expect = 5.7e-48, Sum P(3) = 5.7e-48
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 489 GFRKKRAKSSDTDNDGE 505
G RKK+ S D D D E
Sbjct: 199 GKRKKQDSSDDDDEDDE 215
Score = 38 (18.4 bits), Expect = 2.7e-05, Sum P(4) = 2.7e-05
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 493 KRAKSSDTDNDGEGSHDS 510
K+A+++D+D+D E +
Sbjct: 1080 KKAQTNDSDSDTESKRQA 1097
Score = 38 (18.4 bits), Expect = 2.7e-05, Sum P(4) = 2.7e-05
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 539 LITTYEQLRLLGEKLLDVE 557
LI T +L+L +K+L VE
Sbjct: 1285 LIKTDPELKLTDKKILPVE 1303
Score = 37 (18.1 bits), Expect = 3.5e-62, Sum P(3) = 3.5e-62
Identities = 16/105 (15%), Positives = 43/105 (40%)
Query: 91 STKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQ-LVKELS 149
+++E + D G +E + D S + N + ++ +K+Q ++ E
Sbjct: 23 ASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAK 82
Query: 150 HFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQ 194
P + + K ++ + + +R ++ Q+P + K++
Sbjct: 83 EKPASKKERIADVKKMWEEY-PDVYGVRRSNRSRQEPSRFNIKEE 126
>UNIPROTKB|J9PA90 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:AAEX03002279 EMBL:AAEX03002280
Ensembl:ENSCAFT00000045903 Uniprot:J9PA90
Length = 1840
Score = 565 (203.9 bits), Expect = 3.6e-62, Sum P(3) = 3.6e-62
Identities = 135/397 (34%), Positives = 225/397 (56%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEKLL-DVEWGYAVLDEGHRI 569
Y G+L SRN ++++ + ++ R + LITTYE L L + +L + W + +DE HR+
Sbjct: 577 YIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEIL-LKDKTVLGSINWAFLGVDEAHRL 635
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629
+N ++ + ++ HR+++TG P+QN L ELWSL F+ P K FE +
Sbjct: 636 KNDDSLLYKTLIDFKSHHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-- 693
Query: 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQR 689
G N Y+ L ++ P+LLRR+K DV LP K E +L ++ Q+
Sbjct: 694 ---GRENG--------YQS---LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQK 739
Query: 690 AVYRAFLASSEVEQILDGSRNSLYG-IDV---MRKICNH------PDLLEREQSCQIPDY 739
Y+ ++ + + + G+R S G +++ ++K CNH P+ ERE ++
Sbjct: 740 QYYK-WILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEVL-L 797
Query: 740 GNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
S K+ ++ ++L +++G+RVL+F+Q +MLDIL +L Y ++R+DG +
Sbjct: 798 SLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 857
Query: 800 QRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
R +D +N + S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA RI
Sbjct: 858 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 917
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
GQK+ V +YRL+T+GT+EE++ R K L + +++
Sbjct: 918 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQ 954
Score = 178 (67.7 bits), Expect = 3.6e-62, Sum P(3) = 3.6e-62
Identities = 36/78 (46%), Positives = 47/78 (60%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL C+ I+ DEMGLGKTIQ +SFL L H +Y P ++V P++
Sbjct: 497 LRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLS 556
Query: 461 LLRQWKREAEKWYPSFHV 478
L W+RE E W P +V
Sbjct: 557 TLTSWQREFEIWAPEINV 574
Score = 51 (23.0 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 31/143 (21%), Positives = 63/143 (44%)
Query: 1020 DEEKMRLEEQASQVAQRAAEALRQS--RMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGS 1077
D EK L + Q+ + AL++ + + +R+ ++ T + T+G + V +
Sbjct: 717 DVEKS-LPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGT-RGSTSGFLNIVMELKKC 774
Query: 1078 TVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIR--GNQENAVGAGLERQ 1135
LIKP E + + G+ S+GK++ +LL R+R GN+ + + + R
Sbjct: 775 CNHCYLIKPPE-ENERENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRV-LIFSQMVRM 832
Query: 1136 FEVASSSANVARFADTRTSRSSK 1158
++ + + + R S K
Sbjct: 833 LDILAEYLTIKHYPFQRLDGSIK 855
Score = 45 (20.9 bits), Expect = 8.3e-07, Sum P(3) = 8.3e-07
Identities = 13/50 (26%), Positives = 23/50 (46%)
Query: 474 PSFHVELLHDSAQDLGFRKKRAKSSDTDN-DGEGSHDSDYEGNLSSRNPK 522
PS E+ D + +KK+ K + +N + + S D EG+ + K
Sbjct: 1385 PSEEGEVKDDGLEKSPMKKKQKKKENKENKEKQMSSRKDKEGDKERKKSK 1434
Score = 39 (18.8 bits), Expect = 1.2e-47, Sum P(3) = 1.2e-47
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 489 GFRKKRAKSSDTDNDGE 505
G RK++ S D D D E
Sbjct: 213 GKRKRQDSSDDDDEDDE 229
Score = 38 (18.4 bits), Expect = 3.6e-62, Sum P(3) = 3.6e-62
Identities = 17/109 (15%), Positives = 44/109 (40%)
Query: 87 LRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQ-LV 145
L +++E + D G +E + D S + N + ++ +K+Q ++
Sbjct: 33 LSHSASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVL 92
Query: 146 KELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQ 194
E P + + K ++ + + +R ++ Q+P + K++
Sbjct: 93 PEAKEKPASKKERIADVKKMWEEY-PDVYGVRRSNRSRQEPSRFNIKEE 140
Score = 38 (18.4 bits), Expect = 4.1e-06, Sum P(3) = 4.1e-06
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 493 KRAKSSDTDNDGEGSHDS 510
K+A+++D+D+D E +
Sbjct: 1091 KKAQTNDSDSDTESKRQA 1108
Score = 37 (18.1 bits), Expect = 5.2e-06, Sum P(3) = 5.2e-06
Identities = 16/72 (22%), Positives = 32/72 (44%)
Query: 482 HDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLIT 541
+DS D +++ +SS ++++ + S D D + R L+ +E I
Sbjct: 1096 NDSDSDTESKRQAQRSSASESETDDS-DDDKKPKRRGRPRSVRKDLVEGFTDAEIRRFIK 1154
Query: 542 TYEQLRLLGEKL 553
Y++ L E+L
Sbjct: 1155 AYKKFGLPLERL 1166
>UNIPROTKB|F6TQG2 [details] [associations]
symbol:SMARCA1 "Probable global transcription activator
SNF2L1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF09110
Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194 SMART:SM00490
SMART:SM00717 GO:GO:0005524 GO:GO:0003677 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0016585
GO:GO:0031491 GO:GO:0043044 ChiTaRS:SMARCA1 SUPFAM:SSF101224
EMBL:AL138745 EMBL:AL022577 HGNC:HGNC:11097 IPI:IPI00647510
ProteinModelPortal:F6TQG2 SMR:F6TQG2 PRIDE:F6TQG2
Ensembl:ENST00000450039 ArrayExpress:F6TQG2 Bgee:F6TQG2
Uniprot:F6TQG2
Length = 1005
Score = 550 (198.7 bits), Expect = 3.9e-62, Sum P(4) = 3.9e-62
Identities = 141/405 (34%), Positives = 223/405 (55%)
Query: 529 NRVLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV 586
+ ++ E + +T+YE + + EK + W Y V+DE HRI+N +++S + ++ ++
Sbjct: 255 DEMMPGEWDVCVTSYEMV--IKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKST 312
Query: 587 HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAY 646
+R+++TG P+QN L ELW+L +F+ P F++ F +G
Sbjct: 313 NRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQ--------KLVE 364
Query: 647 RCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQI-L 705
R VL+ P+LLRR+K DV LP K E ++ L++ QR Y L +++ +
Sbjct: 365 RLHAVLK----PFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMK-DIDVLNS 419
Query: 706 DGSRNSLYGIDVM---RKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVW 758
G + + ++++ RK CNHP L + + P Y E S KM V+ ++L
Sbjct: 420 SGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG--PPYTTDEHIVSNSGKMVVLDKLLAKL 477
Query: 759 KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQR------------MALID 806
K+QG RVL+F+Q ++LDILE + + GYEY R+DG TP ++R I+
Sbjct: 478 KEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQREAIE 537
Query: 807 EYN--NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+N NSS FIF+L+T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQK+ V
Sbjct: 538 AFNAPNSSK-FIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPV 596
Query: 865 TVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMK 909
V+RLIT T+EE++ R K L + ++ QQ R ++ K
Sbjct: 597 RVFRLITDNTVEERIVERAEIKLRLDSIVI---QQGRLIDQQSNK 638
Score = 172 (65.6 bits), Expect = 3.9e-62, Sum P(4) = 3.9e-62
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL L+ GI+ DEMGLGKT+Q ++ LG L H+ N+ P +V+ P +
Sbjct: 162 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 221
Query: 461 LLRQWKREAEKWYPSFHV 478
L W E ++W PS V
Sbjct: 222 TLHNWMNEFKRWVPSLRV 239
Score = 49 (22.3 bits), Expect = 1.1e-07, Sum P(4) = 1.1e-07
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QR ++ MKD+ LN G NI QL + N
Sbjct: 402 QREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCN 440
Score = 43 (20.2 bits), Expect = 3.9e-62, Sum P(4) = 3.9e-62
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVD 991
++ N I ++ + G++ +DNI EV+
Sbjct: 842 RDFNQFIKANEKYGRDDIDNIAREVE 867
Score = 40 (19.1 bits), Expect = 3.9e-62, Sum P(4) = 3.9e-62
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 254 VPDEQEARSNDPFSASVDRALRMMSEAAQARPSTKLLDPESLPKL 298
+ DEQ S +V + AA+A S K +DPE K+
Sbjct: 24 IEDEQPGPSTSQEEKNVSSF--QLKLAAKAPKSEKEMDPEYEEKM 66
Score = 39 (18.8 bits), Expect = 4.9e-62, Sum P(4) = 4.9e-62
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 182 EAQKPGKDRSKQQKTVS 198
E ++PG S+++K VS
Sbjct: 25 EDEQPGPSTSQEEKNVS 41
>UNIPROTKB|G3MXX3 [details] [associations]
symbol:CHD2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AHSWCKN EMBL:DAAA02051958 Ensembl:ENSBTAT00000065179
Uniprot:G3MXX3
Length = 1810
Score = 565 (203.9 bits), Expect = 4.2e-62, Sum P(3) = 4.2e-62
Identities = 135/397 (34%), Positives = 225/397 (56%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEKLL-DVEWGYAVLDEGHRI 569
Y G+L SRN ++++ + ++ R + LITTYE L L + +L + W + +DE HR+
Sbjct: 546 YIGDLMSRNTIREYEWIHSQTKRLKFNALITTYEIL-LKDKTVLGSINWAFLGVDEAHRL 604
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629
+N ++ + ++ HR+++TG P+QN L ELWSL F+ P K FE +
Sbjct: 605 KNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHGK-- 662
Query: 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQR 689
G N Y+ L ++ P+LLRR+K DV LP K E +L ++ Q+
Sbjct: 663 ---GRENG--------YQS---LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQK 708
Query: 690 AVYRAFLASSEVEQILDGSRNSLYG-IDV---MRKICNH------PDLLEREQSCQIPDY 739
Y+ ++ + + + G+R S G +++ ++K CNH P+ ERE ++
Sbjct: 709 QYYK-WILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCHLIKPPEENERENGQEVL-L 766
Query: 740 GNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
S K+ ++ ++L +++G+RVL+F+Q +MLDIL +L Y ++R+DG +
Sbjct: 767 SLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGE 826
Query: 800 QRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
R +D +N + S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA RI
Sbjct: 827 IRKQALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRI 886
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
GQK+ V +YRL+T+GT+EE++ R K L + +++
Sbjct: 887 GQKKQVNIYRLVTKGTVEEEIIERAKKKMVLDHLVIQ 923
Score = 178 (67.7 bits), Expect = 4.2e-62, Sum P(3) = 4.2e-62
Identities = 36/78 (46%), Positives = 47/78 (60%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL C+ I+ DEMGLGKTIQ +SFL L H +Y P ++V P++
Sbjct: 466 LRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLS 525
Query: 461 LLRQWKREAEKWYPSFHV 478
L W+RE E W P +V
Sbjct: 526 TLTSWQREFEIWAPEINV 543
Score = 52 (23.4 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 31/143 (21%), Positives = 63/143 (44%)
Query: 1020 DEEKMRLEEQASQVAQRAAEALRQS--RMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGS 1077
D EK L + Q+ + AL++ + + +R+ ++ T + T+G + V +
Sbjct: 686 DVEKS-LPAKVEQILRVEMSALQKQYYKWILTRNYKALAKGT-RGSTSGFLNIVMELKKC 743
Query: 1078 TVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIR--GNQENAVGAGLERQ 1135
LIKP E + + G+ S+GK++ +LL R+R GN+ + + + R
Sbjct: 744 CNHCHLIKPPE-ENERENGQEVLLSLIRSSGKLILLDKLLTRLRERGNRV-LIFSQMVRM 801
Query: 1136 FEVASSSANVARFADTRTSRSSK 1158
++ + + + R S K
Sbjct: 802 LDILAEYLTIKHYPFQRLDGSIK 824
Score = 42 (19.8 bits), Expect = 7.0e-48, Sum P(3) = 7.0e-48
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 489 GFRKKRAKSSDTDNDGE 505
G RKK+ S D D D E
Sbjct: 179 GKRKKQDSSDDEDEDDE 195
Score = 38 (18.4 bits), Expect = 1.8e-47, Sum P(3) = 1.8e-47
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 492 KKRAKSSDTDNDGEGSHDSDYEGNLSSRNP 521
K++ + SD + + S +S+ E + +R P
Sbjct: 130 KRKWELSDDEQEQGSSAESEPEQTVKARRP 159
Score = 38 (18.4 bits), Expect = 8.3e-05, Sum P(5) = 8.3e-05
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 493 KRAKSSDTDNDGEGSHDS 510
K+A+++D+D+D E +
Sbjct: 1060 KKAQTNDSDSDTESKRQA 1077
Score = 38 (18.4 bits), Expect = 8.3e-05, Sum P(5) = 8.3e-05
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 539 LITTYEQLRLLGEKLLDVE 557
LI T +L+L +K+L VE
Sbjct: 1265 LIKTDPELKLTDKKILPVE 1283
Score = 37 (18.1 bits), Expect = 4.2e-62, Sum P(3) = 4.2e-62
Identities = 16/105 (15%), Positives = 43/105 (40%)
Query: 91 STKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQ-LVKELS 149
+++E + D G +E + D S + N + ++ +K+Q ++ E
Sbjct: 4 ASEEASGSDSGSQSESEQGSDPGSGHGSESNSSSESSESQSESESESAGSKSQPVLPEAK 63
Query: 150 HFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQ 194
P + + K ++ + + +R ++ Q+P + K++
Sbjct: 64 EKPASKKERIADVKKMWEEY-PDVYGVRRSNRSRQEPSRFNIKEE 107
Score = 37 (18.1 bits), Expect = 4.0e-05, Sum P(4) = 4.0e-05
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 751 VAQVLKVWKDQGHRVL 766
+A+ LK + DQ H L
Sbjct: 1495 IAECLKAYSDQEHTKL 1510
Score = 37 (18.1 bits), Expect = 4.0e-05, Sum P(4) = 4.0e-05
Identities = 16/72 (22%), Positives = 32/72 (44%)
Query: 482 HDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLIT 541
+DS D +++ +SS ++++ + S D D + R L+ +E I
Sbjct: 1065 NDSDSDTESKRQAQRSSASESETDDS-DDDKKPKRRGRPRSVRKDLVEGFTDAEIRRFIK 1123
Query: 542 TYEQLRLLGEKL 553
Y++ L E+L
Sbjct: 1124 AYKKFGLPLERL 1135
>DICTYBASE|DDB_G0292358 [details] [associations]
symbol:ino80 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0031011 "Ino80 complex" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0006338 "chromatin remodeling" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
dictyBase:DDB_G0292358 GO:GO:0005524 GenomeReviews:CM000155_GR
GO:GO:0003677 GO:GO:0006281 GO:GO:0016887 GO:GO:0006338
GO:GO:0006366 GO:GO:0031011 GO:GO:0004386 EMBL:AAFI02000189
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_629681.1 ProteinModelPortal:Q54DG0
STRING:Q54DG0 PRIDE:Q54DG0 EnsemblProtists:DDB0233012
GeneID:8628597 KEGG:ddi:DDB_G0292358 InParanoid:Q54DG0 OMA:MINILED
ProtClustDB:CLSZ2497087 Uniprot:Q54DG0
Length = 2129
Score = 355 (130.0 bits), Expect = 5.6e-62, Sum P(4) = 5.6e-62
Identities = 73/179 (40%), Positives = 115/179 (64%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K++V+ ++LK K GHRVL+++Q +M++ILE F+I Y+Y R+DG + + R +
Sbjct: 1766 SGKLQVLDKLLKDLKVGGHRVLIYSQFTKMINILEDFMIFRKYKYLRLDGSSKLDDRRDM 1825
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+D++ + +F F+L+T+ G+G NLT A+ VI +D DWNP+ D QA++RA R+GQ + V
Sbjct: 1826 VDDFQSDPSIFAFLLSTRACGIGINLTSADTVIFYDSDWNPTVDEQAQDRAHRLGQTRPV 1885
Query: 865 TVYRLITRGTIEEKVYHRQIYKHFLTNKIL------KNPQQRRFFKARNMKDLFTLNDD 917
TVYRLIT+ TIEEK+ R KH + + ++ NP++ N F L+DD
Sbjct: 1886 TVYRLITKNTIEEKILKRAKQKHQIQSIVIAGGKFESNPEELDQV-GENEAISFLLDDD 1943
Score = 261 (96.9 bits), Expect = 5.6e-62, Sum P(4) = 5.6e-62
Identities = 69/227 (30%), Positives = 115/227 (50%)
Query: 520 NPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLD-VEWGYAVLDEGHRIRNPNAEISL 578
NPKK L +R S +LIT+Y + + EK + W Y VLDE H I++ +
Sbjct: 1257 NPKK---LYHR--NSPFHVLITSYNVI-VRDEKYFHRLRWQYMVLDEAHAIKSSASNRWK 1310
Query: 579 VCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANAS 638
+R+++TG PIQN ++ELW+L F+ P F F+ I +
Sbjct: 1311 TLMSFNCRNRLLLTGTPIQNSMAELWALLHFIMPTFFDSHDEFAEWFSKDIENHAMSQGG 1370
Query: 639 PLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS 698
L R ++L+ P++LRR+K DV ++P KTE ++C+LT Q+ +Y++ ++
Sbjct: 1371 -LNEHQLNRLHMILK----PFMLRRIKRDVENEMPSKTEVEVYCNLTHRQKKLYQSIRSN 1425
Query: 699 SEVEQILDGSRNSLYG--------IDVMRKICNHPDLLEREQSCQIP 737
+ ++L G+ S G + RK+CNHP+ +R + C+ P
Sbjct: 1426 ISITELLGGASFSEQGSMKALMNFVMQFRKVCNHPETFKRSE-CESP 1471
Score = 169 (64.5 bits), Expect = 5.6e-62, Sum P(4) = 5.6e-62
Identities = 38/97 (39%), Positives = 54/97 (55%)
Query: 383 PPFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLG 442
PP + LK P + +L YQ G+ W+ L+ Q GI+ DEMGLGKTIQ ++ L
Sbjct: 1143 PPGFSTADTLKQPTILNADLKPYQLKGMTWIVNLYDQGINGILADEMGLGKTIQSIAVLA 1202
Query: 443 AL-HFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHV 478
L N++ P ++V P + L WK E K+ P+F V
Sbjct: 1203 HLAEEKNIWGPFLIVTPKSTLHNWKNEFAKFVPAFKV 1239
Score = 57 (25.1 bits), Expect = 5.6e-62, Sum P(4) = 5.6e-62
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 93 KEDNDIDDGDSTEQDGREDEKSAVQA-SPNDMTLQHALTADRLKSLKKT-KAQLVK 146
KE ND DD +S+ ++ E+E S + + + + L ++ LK +K + QL+K
Sbjct: 1042 KEKNDQDDNESSSEE--EEESSDDEGKTEQEKKEEEELKSEALKKTQKAIELQLLK 1095
Score = 50 (22.7 bits), Expect = 3.0e-61, Sum P(4) = 3.0e-61
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 91 STKEDNDIDDGDSTEQDGREDE--KS-AVQASPNDMTLQHALTADRLKSLKKTK 141
S +E+ DD TEQ+ +E+E KS A++ + + LQ T + + K K
Sbjct: 1054 SEEEEESSDDEGKTEQEKKEEEELKSEALKKTQKAIELQLLKTKTFDRDVNKIK 1107
Score = 49 (22.3 bits), Expect = 8.2e-61, Sum P(5) = 8.2e-61
Identities = 36/178 (20%), Positives = 61/178 (34%)
Query: 133 RLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSK 192
++K+ K KA ++ K + G KF +D E +R KE K +
Sbjct: 927 KIKNQKPPKATKDNQI-RAKKLVKEMGAYWRKFDKD---EREAKRRAEKEEANQRKREEE 982
Query: 193 QQKTVSVXXXXXXXXXXXXXXXGFVETKRDELVRKGILTPFHKLKGFERCIQQPGPSNKQ 252
Q+ F+ K D+ G TP + Q P NK+
Sbjct: 983 VQEAKRQQRKLNFLISQTELYSHFMSKKLDD-PSSGDATPA-TIGSLMNGSQMPTEQNKK 1040
Query: 253 NVPDEQEARSNDPFSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRPFQRLKT 310
+ ++ + N+ S + + + Q + + L E+L K Q LKT
Sbjct: 1041 -IKEKNDQDDNESSSEEEEESSDDEGKTEQEKKEEEELKSEALKKTQKAIE-LQLLKT 1096
Score = 46 (21.3 bits), Expect = 5.9e-48, Sum P(4) = 5.9e-48
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 491 RKKRAKSSDTDNDGEGSHDS--DYEGNLSSRN 520
R R +SS +D D S DS D + SS N
Sbjct: 274 RSDRDRSSRSDRDSRSSRDSRSDRDRTSSSSN 305
Score = 45 (20.9 bits), Expect = 8.2e-61, Sum P(5) = 8.2e-61
Identities = 16/75 (21%), Positives = 32/75 (42%)
Query: 48 KPHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQD 107
K H S S SS + ++ + + G+ +S+ + S+ + D D +++D
Sbjct: 205 KSHSSSSSSSSSSYPIKSIFGNIGGGSSK-GSSSSSSRSSK--SSGSSSSRSDRDKSDRD 261
Query: 108 GREDEKSAVQASPND 122
R D +S +D
Sbjct: 262 SRSDRESRSDRDRSD 276
Score = 44 (20.5 bits), Expect = 9.5e-48, Sum P(4) = 9.5e-48
Identities = 10/38 (26%), Positives = 22/38 (57%)
Query: 483 DSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
DS D R + + SS+ +N+ +++++ GN ++ N
Sbjct: 292 DSRSD---RDRTSSSSNNNNNNNNNNNNNNSGNNNNSN 326
Score = 42 (19.8 bits), Expect = 1.5e-47, Sum P(4) = 1.5e-47
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 484 SAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
S D R R SD D S++++ N ++ N
Sbjct: 281 SRSDRDSRSSRDSRSDRDRTSSSSNNNNNNNNNNNNN 317
Score = 41 (19.5 bits), Expect = 2.1e-60, Sum P(5) = 2.1e-60
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 92 TKEDNDIDDGDSTEQDGREDEKSAVQASPNDMT 124
++ D D D D + + R+ S S D T
Sbjct: 268 SRSDRDRSDRDRSSRSDRDSRSSRDSRSDRDRT 300
Score = 41 (19.5 bits), Expect = 5.5e-60, Sum P(5) = 5.5e-60
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 249 SNKQNVPDEQEARSNDPFSASVDRALRMMSEAAQARPSTKLLD 291
S+ N + +N+P S+S + R S + PS L +
Sbjct: 384 SSLNNNNNNNNNNNNNPLSSSSSSSNRQPSTTSPIMPSNTLFN 426
Score = 40 (19.1 bits), Expect = 2.7e-60, Sum P(5) = 2.7e-60
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 85 DHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPN 121
+++ S +D D E+ GR D +S + N
Sbjct: 340 NNINNNSNNSRSDRDSRSDRERSGRSDRESRGDSKSN 376
Score = 39 (18.8 bits), Expect = 1.3e-24, Sum P(4) = 1.3e-24
Identities = 15/68 (22%), Positives = 29/68 (42%)
Query: 491 RKKRAKSSDTDNDG---EGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLR 547
+K + K+ DN+ E SD EG ++ +L + +++ + +L+
Sbjct: 1039 KKIKEKNDQDDNESSSEEEEESSDDEGKTEQEKKEEEELKSEALKKTQKAI------ELQ 1092
Query: 548 LLGEKLLD 555
LL K D
Sbjct: 1093 LLKTKTFD 1100
>SGD|S000005816 [details] [associations]
symbol:SNF2 "Catalytic subunit of the SWI/SNF chromatin
remodeling complex" species:4932 "Saccharomyces cerevisiae"
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0016514 "SWI/SNF complex" evidence=IDA;IMP] [GO:0006338
"chromatin remodeling" evidence=IGI;IMP] [GO:0031496 "positive
regulation of mating type switching" evidence=IMP] [GO:0031492
"nucleosomal DNA binding" evidence=IDA] [GO:0042766 "nucleosome
mobilization" evidence=IMP;IDA] [GO:0006302 "double-strand break
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IMP;IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0043044 "ATP-dependent chromatin remodeling" evidence=IMP;IDA]
[GO:0044109 "cellular alcohol catabolic process" evidence=IMP]
[GO:0005987 "sucrose catabolic process" evidence=IMP] [GO:0070577
"histone acetyl-lysine binding" evidence=IMP;IDA] [GO:0042148
"strand invasion" evidence=IMP] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IMP] [GO:0001102 "RNA polymerase II
activating transcription factor binding" evidence=IPI]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR014978 InterPro:IPR017956 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00384 SMART:SM00490
SMART:SM00951 SGD:S000005816 GO:GO:0005524 EMBL:BK006948
GO:GO:0006351 GO:GO:0006261 GO:GO:0016514 GO:GO:0006302
GO:GO:0004386 GO:GO:0005987 GO:GO:0042766 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GeneTree:ENSGT00550000074659 InterPro:IPR014012
PROSITE:PS51204 EMBL:X89633 GO:GO:0008094 HOGENOM:HOG000172362
GO:GO:0031492 RefSeq:NP_014933.3 GeneID:854465 KEGG:sce:YOR290C
KO:K11786 GO:GO:0061412 GO:GO:0042148 OrthoDB:EOG4D565R EMBL:M61703
EMBL:X57837 EMBL:D90459 EMBL:Z75198 EMBL:Z75199 PIR:S15047
RefSeq:NP_014935.3 ProteinModelPortal:P22082 SMR:P22082
DIP:DIP-1150N IntAct:P22082 MINT:MINT-600461 STRING:P22082
PaxDb:P22082 PeptideAtlas:P22082 EnsemblFungi:YOR290C GeneID:854467
KEGG:sce:YOR292C CYGD:YOR290c OMA:HPNFLSK NextBio:976750
Genevestigator:P22082 GermOnline:YOR290C GO:GO:0044109
GO:GO:0031496 Uniprot:P22082
Length = 1703
Score = 564 (203.6 bits), Expect = 6.7e-62, Sum P(4) = 6.7e-62
Identities = 134/386 (34%), Positives = 212/386 (54%)
Query: 530 RVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCK-QLQTVHR 588
++ E +++TT+E + L V+W + ++DEGHR++N +++SL +R
Sbjct: 860 KIRAGEFDVVLTTFEYIIKERALLSKVKWVHMIIDEGHRMKNAQSKLSLTLNTHYHADYR 919
Query: 589 IIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRC 648
+I+TG P+QN L ELW+L +FV P + F+ F P G +++S
Sbjct: 920 LILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTG--GQDKIELSEEETL 977
Query: 649 AVV--LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVY-------RAFLASS 699
V+ L ++ P+LLRR+K DV +LP K E V+ C ++ Q+ +Y R F+
Sbjct: 978 LVIRRLHKVLRPFLLRRLKKDVEKELPDKVEKVVKCKMSALQQIMYQQMLKYRRLFIGDQ 1037
Query: 700 EVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSE---------KMKV 750
++++ G R I ++KICNHP + E ++ D NP R K ++
Sbjct: 1038 NNKKMV-GLRGFNNQIMQLKKICNHPFVFE-----EVEDQINPTRETNDDIWRVAGKFEL 1091
Query: 751 VAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN 810
+ ++L K GHRVL+F Q Q++DI+E FL +Y R+DG T +R L+ +N
Sbjct: 1092 LDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSELLRLFNA 1151
Query: 811 -SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRL 869
S+ FIL+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RIGQK +V + RL
Sbjct: 1152 PDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRL 1211
Query: 870 ITRGTIEEKVYHRQIYKHFLTNKILK 895
IT ++EE + R K + K+++
Sbjct: 1212 ITTNSVEEVILERAYKKLDIDGKVIQ 1237
Score = 166 (63.5 bits), Expect = 6.7e-62, Sum P(4) = 6.7e-62
Identities = 35/101 (34%), Positives = 53/101 (52%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH-FSNMYKPSIVVCPVT 460
L DYQ G+QW+ L GI+ DEMGLGKTIQ +S L L+ N+ P +V+ P++
Sbjct: 767 LKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVIVPLS 826
Query: 461 LLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTD 501
L W E KW P+ S + ++ + ++ + D
Sbjct: 827 TLSNWSSEFAKWAPTLRTISFKGSPNERKAKQAKIRAGEFD 867
Score = 49 (22.3 bits), Expect = 6.7e-62, Sum P(4) = 6.7e-62
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 54 ESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGD 102
+S+ + Q+K Y K ++ I + VD L V +D + DD D
Sbjct: 691 DSLTRAVKDQQK-YTK-EMIDSHIKEASEEVDDLSMVPKMKDEEYDDDD 737
Score = 44 (20.5 bits), Expect = 6.7e-62, Sum P(4) = 6.7e-62
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 1134 RQFEVASSSANVARFADTRTSRSSKN-ASDVQPEI 1167
RQFEV+ N + RT + K+ A D EI
Sbjct: 1370 RQFEVSDDEKNDKQARKQRTKKEDKSEAIDGNGEI 1404
Score = 41 (19.5 bits), Expect = 1.4e-61, Sum P(4) = 1.4e-61
Identities = 29/119 (24%), Positives = 47/119 (39%)
Query: 965 DKENNLEIGSSRRKGKE-KVDNIGDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDE-- 1021
DK ++ G+ KG+ DN G ++ NI S D AMN D ++ +
Sbjct: 1393 DKSEAID-GNGEIKGENIDADNDGPRIN---NI--SAEDRADTDLAMNDDDFLSKKRKAG 1446
Query: 1022 ------EKMRLE--EQASQVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVR 1072
+K++LE E + A ++ + DI P GK+ A +S R
Sbjct: 1447 RPRGRPKKVKLEGSENSEPPALESSPVTGDNSPSEDFMDIPKPRTAGKTSVKSARTSTR 1505
Score = 37 (18.1 bits), Expect = 7.4e-06, Sum P(4) = 7.4e-06
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 683 SLTEEQRAVYRAFLASSE 700
S +EEQ A+ R+ L + E
Sbjct: 1245 STSEEQEALLRSLLDAEE 1262
>UNIPROTKB|Q9ULG1 [details] [associations]
symbol:INO80 "DNA helicase INO80" species:9606 "Homo
sapiens" [GO:0003779 "actin binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005874 "microtubule" evidence=IEA]
[GO:0051301 "cell division" evidence=IEA] [GO:0003678 "DNA helicase
activity" evidence=IDA] [GO:0003677 "DNA binding" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0034644 "cellular
response to UV" evidence=IMP] [GO:0000724 "double-strand break
repair via homologous recombination" evidence=IMP] [GO:0070914
"UV-damage excision repair" evidence=IMP] [GO:0071479 "cellular
response to ionizing radiation" evidence=IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0030307 "positive regulation of cell growth"
evidence=IMP] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IMP] [GO:0010571 "positive regulation of DNA
replication involved in S phase" evidence=IMP] [GO:0043014
"alpha-tubulin binding" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0032508 "DNA duplex unwinding" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
GO:GO:0005524 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043014
GO:GO:0003678 GO:GO:0070914 GO:GO:2000045 EMBL:CH471125
GO:GO:0010571 KO:K11665 CTD:54617 ChiTaRS:INO80 EMBL:AB033085
EMBL:BC146785 EMBL:AL137280 IPI:IPI00008091 PIR:T46350
RefSeq:NP_060023.1 UniGene:Hs.292949 ProteinModelPortal:Q9ULG1
SMR:Q9ULG1 DIP:DIP-34296N IntAct:Q9ULG1 STRING:Q9ULG1
PhosphoSite:Q9ULG1 DMDM:114149322 PaxDb:Q9ULG1 PRIDE:Q9ULG1
Ensembl:ENST00000361937 Ensembl:ENST00000401393 GeneID:54617
KEGG:hsa:54617 UCSC:uc001zni.3 GeneCards:GC15M041271
HGNC:HGNC:26956 MIM:610169 neXtProt:NX_Q9ULG1 PharmGKB:PA162392040
HOGENOM:HOG000231795 HOVERGEN:HBG057875 InParanoid:Q9ULG1
OMA:KVIRKFW OrthoDB:EOG4ZKJKF GenomeRNAi:54617 NextBio:57137
ArrayExpress:Q9ULG1 Bgee:Q9ULG1 CleanEx:HS_INO80
Genevestigator:Q9ULG1 GermOnline:ENSG00000128908 Uniprot:Q9ULG1
Length = 1556
Score = 354 (129.7 bits), Expect = 8.2e-62, Sum P(5) = 8.2e-62
Identities = 62/138 (44%), Positives = 98/138 (71%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K+ + +L K QGHRVL+++Q +M+D+LE +++ + Y R+DG + + +R +
Sbjct: 1100 SGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDM 1159
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+ ++ N +D+F+F+L+T+ GGLG NLT A+ VI +D DWNP+ D QA +RA R+GQ + V
Sbjct: 1160 VADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1219
Query: 865 TVYRLITRGTIEEKVYHR 882
TVYRLI +GTIEE++ R
Sbjct: 1220 TVYRLICKGTIEERILQR 1237
Score = 257 (95.5 bits), Expect = 8.2e-62, Sum P(5) = 8.2e-62
Identities = 66/208 (31%), Positives = 108/208 (51%)
Query: 538 LLITTYEQLRLLGEKLLD-VEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPI 596
++IT+Y QL + K V+W Y VLDE +++ ++ + Q Q +R+++TG PI
Sbjct: 626 VVITSY-QLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPI 684
Query: 597 QNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLI 656
QN ++ELW+L F+ P F F+ I N S + + R ++L+
Sbjct: 685 QNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHA-ENKSAIDENQLSRLHMILK--- 740
Query: 657 MPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGID 716
P++LRR+K DV +L K E +++C LT Q+ +Y+A +E +L S S
Sbjct: 741 -PFMLRRIKKDVENELSDKIEILMYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQ 799
Query: 717 ---------VM--RKICNHPDLLEREQS 733
VM RK+CNHP+L ER+++
Sbjct: 800 NTTSSLMNLVMQFRKVCNHPELFERQET 827
Score = 166 (63.5 bits), Expect = 8.2e-62, Sum P(5) = 8.2e-62
Identities = 36/95 (37%), Positives = 55/95 (57%)
Query: 387 TLEGGLKIPE-SIFNN-LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL 444
++ G IP+ +IFN L YQ G+ WL L+ Q GI+ DEMGLGKT+Q ++ L L
Sbjct: 501 SIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHL 560
Query: 445 -HFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHV 478
N++ P +++ P + L W +E ++ P F V
Sbjct: 561 AERENIWGPFLIISPASTLNNWHQEFTRFVPKFKV 595
Score = 57 (25.1 bits), Expect = 8.2e-62, Sum P(5) = 8.2e-62
Identities = 22/102 (21%), Positives = 49/102 (48%)
Query: 96 NDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGI 155
++ + DS +D E+E + + ++M H +L K +K + +++ ++ G+
Sbjct: 133 DESSEADSQSEDDDEEELNLSREELHNMLRLHKYK--KLHQNKYSKDKELQQYQYYSAGL 190
Query: 156 TSKGIEHDKFIQDLVKEEHR--PKRKSKEAQKPGKDRSKQQK 195
S +D F + ++ H PK+K + +K K + K+ K
Sbjct: 191 LST---YDPFYE---QQRHLLGPKKKKFKEEKKLKAKLKKVK 226
Score = 46 (21.3 bits), Expect = 8.2e-62, Sum P(5) = 8.2e-62
Identities = 53/206 (25%), Positives = 78/206 (37%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVDEETNILKSLFDAN-GIHSAM----NHDAIMNAHD 1020
KE+ L+ G R++G V D +N+ D+ + SAM + +I +
Sbjct: 1310 KEDELD-GKRRKEGVNLVIPFVPSADN-SNLSADGDDSFISVDSAMPSPFSEISISSELH 1367
Query: 1021 EEKMRLEEQASQ---VAQRAAEALRQSRMLRSRDDI--SVP-TWTGKS----GTAGAPSS 1070
+ L+E +S + A + QSR S I SV T G S AG S
Sbjct: 1368 TGSIPLDESSSDMLVIVDDPASSAPQSRATNSPASITGSVSDTVNGISIQEMPAAGRGHS 1427
Query: 1071 VRKKFGSTVGS-QLIKPL-EGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAV 1128
R + G GS K +G S T + AGA AG +S+ A N +
Sbjct: 1428 ARSR-GRPKGSGSTAKGAGKGRSRKSTAGSAAAMAGAKAGAAAASAAAYAAYGYNVSKGI 1486
Query: 1129 GAGLERQFEVASSSANVARFADTRTS 1154
A Q + A +A F + S
Sbjct: 1487 SASSPLQTSLVRP-AGLADFGPSSAS 1511
Score = 41 (19.5 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 671 QLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRN 710
Q + T + L C T E+R + RA SE+++++ N
Sbjct: 1215 QTKQVTVYRLICKGTIEERILQRA-KEKSEIQRMVISGGN 1253
>UNIPROTKB|F1SJG5 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 OMA:PQEGMHQ GO:GO:0035887
EMBL:CT998562 EMBL:CU062411 Ensembl:ENSSSCT00000005766
Uniprot:F1SJG5
Length = 1556
Score = 336 (123.3 bits), Expect = 1.1e-61, Sum P(5) = 1.1e-61
Identities = 75/200 (37%), Positives = 116/200 (58%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQS-CQIPDYGNP--------ERSEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S + Y N S K +++ ++L
Sbjct: 985 GAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILP 1044
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+ HRVLLF Q ++ I+E + + Y R+DG T + R AL+ ++N S F
Sbjct: 1045 KLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYF 1104
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ V+IFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 1105 IFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1164
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 1165 EEKILAAAKYKLNVDQKVIQ 1184
Score = 285 (105.4 bits), Expect = 1.1e-61, Sum P(5) = 1.1e-61
Identities = 72/213 (33%), Positives = 112/213 (52%)
Query: 532 LRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRI 589
LRS + +L+TTYE + L + W Y ++DEGHR++N + +++ V RI
Sbjct: 802 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRI 861
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QNKL ELW+L +F+ P FE F P + G L
Sbjct: 862 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--ERVDLNEEETILII 919
Query: 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------SEVE 702
L ++ P+LLRR+K +V +QLP+K E+V+ C ++ Q+ +YR A SE +
Sbjct: 920 RRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKD 979
Query: 703 QILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
+ G +L I +RKICNHP + + E+S
Sbjct: 980 KKGKGGAKTLMNTIMQLRKICNHPYMFQHIEES 1012
Score = 147 (56.8 bits), Expect = 1.1e-61, Sum P(5) = 1.1e-61
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 398 IFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVV 456
I L YQ G++W+ L+ GI+ DEMGLGKTIQ ++ + L + P +++
Sbjct: 704 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 763
Query: 457 CPVTLLRQWKREAEKWYPS 475
P++ L W E +KW PS
Sbjct: 764 VPLSTLSNWTYEFDKWAPS 782
Score = 63 (27.2 bits), Expect = 1.1e-61, Sum P(5) = 1.1e-61
Identities = 25/106 (23%), Positives = 49/106 (46%)
Query: 85 DHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSL---KKTK 141
+HLR+ E N G+ T + ++S + S LQ A + + L KK +
Sbjct: 451 NHLRKAGFLEQNP--RGEGTWKSNLSSKQSNLSDSTEKDRLQMAEDEEGYRKLIDQKKDR 508
Query: 142 --AQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQK 185
A L+++ + +T+ EH + KE+ + +R+ K+A++
Sbjct: 509 RLAYLLQQTDEYVANLTNLVWEHKQ--AQAAKEKKKRRRRKKKAEE 552
Score = 52 (23.4 bits), Expect = 1.5e-60, Sum P(5) = 1.5e-60
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 88 RRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPN 121
R S + D+D ++ D E+ R++ + + PN
Sbjct: 616 RSDSEESDSDYEEEDEEEESSRQETEEKILLDPN 649
Score = 50 (22.7 bits), Expect = 2.4e-60, Sum P(5) = 2.4e-60
Identities = 28/123 (22%), Positives = 50/123 (40%)
Query: 49 PHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDG 108
P K + +DP QE+ Y +L+A +A + L + D+ + E
Sbjct: 313 PVQKPQGLDPVEILQEREY-RLQA------RIAHRIQELENLPGSLPPDLRTKATVELKA 365
Query: 109 -------REDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIE 161
R+ + V D TL+ AL + K+ K++K Q ++E K + IE
Sbjct: 366 LRLLNFQRQLRQEVVACMRRDTTLETALNS---KAYKRSKRQTLREARMTEKLEKQQKIE 422
Query: 162 HDK 164
++
Sbjct: 423 QER 425
Score = 49 (22.3 bits), Expect = 1.1e-61, Sum P(5) = 1.1e-61
Identities = 13/66 (19%), Positives = 36/66 (54%)
Query: 987 GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRM 1046
G ++ E++ +L+S+F + A ++ +++EE EE+ + ++ A++++
Sbjct: 1451 GSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEE----EEEDEEESESEAKSVKVKIK 1506
Query: 1047 LRSRDD 1052
L +D+
Sbjct: 1507 LNKKDE 1512
Score = 45 (20.9 bits), Expect = 7.8e-60, Sum P(5) = 7.8e-60
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 90 VSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTL 125
V+ + D++ D D E+D E+E+S+ Q + + L
Sbjct: 613 VAPRSDSEESDSDYEEED--EEEESSRQETEEKILL 646
>POMBASE|SPAC1250.01 [details] [associations]
symbol:snf21 "ATP-dependent DNA helicase Snf21"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0000991 "core RNA polymerase II binding
transcription factor activity" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IC] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006338 "chromatin
remodeling" evidence=ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0016586 "RSC complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 PomBase:SPAC1250.01 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006338 GO:GO:0000790
GO:GO:0004003 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016586 GO:GO:0000991 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172362
KO:K11786 EMBL:AB162438 PIR:T37561 RefSeq:NP_594861.1
ProteinModelPortal:Q9UTN6 DIP:DIP-48388N STRING:Q9UTN6
EnsemblFungi:SPAC1250.01.1 GeneID:2542638 KEGG:spo:SPAC1250.01
OMA:WAPSISA OrthoDB:EOG4D565R NextBio:20803687 Uniprot:Q9UTN6
Length = 1199
Score = 568 (205.0 bits), Expect = 1.1e-61, Sum P(3) = 1.1e-61
Identities = 133/380 (35%), Positives = 218/380 (57%)
Query: 530 RVLRSESGLLITTYEQLRLLGEKLLD-VEWGYAVLDEGHRIRNPNAEIS-LVCKQLQTVH 587
+V S +L+TTYE + + LL ++W Y ++DEGHR++N ++++ + + +
Sbjct: 510 QVRHSNFQVLLTTYEYI-IKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSRY 568
Query: 588 RIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYR 647
R+I+TG P+QN L ELW+L +FV P + F+ F P G + L +
Sbjct: 569 RLILTGTPLQNNLPELWALLNFVLPRIFNSIKSFDEWFNTPFANTGGQDKMELTEEESLL 628
Query: 648 CAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSE--VEQIL 705
L ++ P+LLRR+K DV A+LP K E V+ C ++ Q+ +Y VE
Sbjct: 629 VIRRLHKVLRPFLLRRLKKDVEAELPDKVEKVIRCQMSGLQQKLYYQMKKHGMLYVEDAK 688
Query: 706 DGSRNSLYGID--VM--RKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVL-K 756
G + + G+ VM +KICNHP + E + P N + S K +++ ++L K
Sbjct: 689 RG-KTGIKGLQNTVMQLKKICNHPFVFEDVERSIDPTGFNYDMLWRVSGKFELLDRILPK 747
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+++ GHR+L+F Q Q+++I+E +L + Y R+DG T R L+ +N+ +++V
Sbjct: 748 LFRS-GHRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLLGVFNDPTAEVN 806
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
+F+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RIGQ ++V +YRLIT ++
Sbjct: 807 LFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKSV 866
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EE + R YK + K+++
Sbjct: 867 EENILARAQYKLDIDGKVIQ 886
Score = 153 (58.9 bits), Expect = 1.1e-61, Sum P(3) = 1.1e-61
Identities = 32/82 (39%), Positives = 48/82 (58%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L +YQ G+QW+ L+ GI+ DEMGLGKTIQ +S + L P +V+ P++
Sbjct: 417 LKEYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLITHLIEKKRQNGPFLVIVPLS 476
Query: 461 LLRQWKREAEKWYPSFHVELLH 482
L W E E+W PS V++++
Sbjct: 477 TLTNWTMEFERWAPSI-VKIVY 497
Score = 45 (20.9 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 1017 NAHDEEKMRL-EEQASQVAQRAAEALRQSRMLRSRDDI 1053
N ++KM L EE++ V +R + LR + R + D+
Sbjct: 612 NTGGQDKMELTEEESLLVIRRLHKVLRPFLLRRLKKDV 649
Score = 44 (20.5 bits), Expect = 1.1e-61, Sum P(3) = 1.1e-61
Identities = 21/96 (21%), Positives = 42/96 (43%)
Query: 52 KSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGRED 111
+S + + +T +L + LR+ + EI A H++R + D + + +Q
Sbjct: 24 ESGATEHDNTEYAQLCDVLRSAQSEIEARRDLKGHIKRCFSSVDKNTEKLILKQQVLAYK 83
Query: 112 EKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKE 147
+ S +P+D L L RL ++ +VK+
Sbjct: 84 KLSQNLPAPDDCILSVLL---RLSKDEQLLQSIVKQ 116
Score = 37 (18.1 bits), Expect = 1.5e-49, Sum P(3) = 1.5e-49
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 504 GEGSHDSDYEGNLSSRNPKKWD 525
GE ++D D + ++ + +K D
Sbjct: 372 GESAYDEDMDRRMNPEDDRKID 393
>RGD|1561046 [details] [associations]
symbol:Smarca1 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 1"
species:10116 "Rattus norvegicus" [GO:0000733 "DNA strand
renaturation" evidence=ISO] [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006351 "transcription,
DNA-dependent" evidence=ISO] [GO:0007420 "brain development"
evidence=ISO] [GO:0016589 "NURF complex" evidence=ISO] [GO:0030182
"neuron differentiation" evidence=ISO] [GO:0031491 "nucleosome
binding" evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=ISO] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IEA;ISO] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0090537 "CERF
complex" evidence=ISO] [GO:2000177 "regulation of neural precursor
cell proliferation" evidence=ISO] [GO:0008094 "DNA-dependent ATPase
activity" evidence=ISO] [GO:0070615 "nucleosome-dependent ATPase
activity" evidence=ISO] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:1561046 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00947680
PRIDE:D3ZIE5 Ensembl:ENSRNOT00000068478 UCSC:RGD:1561046
ArrayExpress:D3ZIE5 Uniprot:D3ZIE5
Length = 1034
Score = 547 (197.6 bits), Expect = 1.4e-61, Sum P(3) = 1.4e-61
Identities = 141/405 (34%), Positives = 223/405 (55%)
Query: 529 NRVLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV 586
+ ++ E + +T+YE + + EK + W Y V+DE HRI+N +++S + ++ ++
Sbjct: 256 DEMMPGEWDVCVTSYEMV--IKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKST 313
Query: 587 HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAY 646
+R+++TG P+QN L ELW+L +F+ P F++ F +G
Sbjct: 314 NRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQ--------KLVE 365
Query: 647 RCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQI-L 705
R VL+ P+LLRR+K DV LP K E ++ L++ QR Y L +++ +
Sbjct: 366 RLHAVLK----PFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMK-DIDVLNS 420
Query: 706 DGSRNSLYGIDVM---RKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVW 758
G + + ++++ RK CNHP L + + P Y E S KM + ++L
Sbjct: 421 SGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG--PPYTTDEHIVSNSGKMVALDKLLARI 478
Query: 759 KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL------------ID 806
K+QG RVL+F+Q ++LDILE + + GYEY R+DG TP ++R L I+
Sbjct: 479 KEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERENLFLHKHNLFSTEAIE 538
Query: 807 EYN--NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+N NSS FIF+L+T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQK+ V
Sbjct: 539 AFNAPNSSK-FIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPV 597
Query: 865 TVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMK 909
V+RLIT T+EE++ R K L + ++ QQ R ++ K
Sbjct: 598 RVFRLITDNTVEERIVERAEIKLRLDSIVI---QQGRLIDQQSNK 639
Score = 171 (65.3 bits), Expect = 1.4e-61, Sum P(3) = 1.4e-61
Identities = 34/78 (43%), Positives = 46/78 (58%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL L+ GI+ DEMGLGKT+Q ++ LG L H+ N P +V+ P +
Sbjct: 163 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNFPGPHMVLVPKS 222
Query: 461 LLRQWKREAEKWYPSFHV 478
L W E ++W PS V
Sbjct: 223 TLHNWMNEFKRWVPSLRV 240
Score = 49 (22.3 bits), Expect = 9.7e-08, Sum P(3) = 9.7e-08
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QR ++ MKD+ LN G NI QL + N
Sbjct: 403 QREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCN 441
Score = 42 (19.8 bits), Expect = 1.4e-61, Sum P(3) = 1.4e-61
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVD 991
++ N I ++ + G++ +DN+ EV+
Sbjct: 843 RDFNQFIKANEKYGRDDIDNVAREVE 868
Score = 39 (18.8 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 7/17 (41%), Positives = 15/17 (88%)
Query: 1105 ASAGKVLSSSELLARIR 1121
+++GK+++ +LLARI+
Sbjct: 463 SNSGKMVALDKLLARIK 479
Score = 37 (18.1 bits), Expect = 1.5e-47, Sum P(3) = 1.5e-47
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 492 KKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINR 530
K AK+S ++ + D +YE + + K+++ L+ +
Sbjct: 47 KLAAKTSKSEKE----MDPEYEEKMKADRAKRFEFLLKQ 81
>UNIPROTKB|F1NYY9 [details] [associations]
symbol:INO80 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006338
"chromatin remodeling" evidence=IEA] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0030307 "positive
regulation of cell growth" evidence=IEA] [GO:0031011 "Ino80
complex" evidence=IEA] [GO:0034644 "cellular response to UV"
evidence=IEA] [GO:0043014 "alpha-tubulin binding" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0051225 "spindle
assembly" evidence=IEA] [GO:0070914 "UV-damage excision repair"
evidence=IEA] [GO:0071479 "cellular response to ionizing radiation"
evidence=IEA] [GO:2000045 "regulation of G1/S transition of mitotic
cell cycle" evidence=IEA] [GO:0000070 "mitotic sister chromatid
segregation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003678 "DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 GO:GO:0005524
GO:GO:0030307 GO:GO:0051225 GO:GO:0003677 GO:GO:0045944
GO:GO:0016887 GO:GO:0006338 GO:GO:0000070 GO:GO:0031011
GO:GO:0000724 GO:GO:0034644 GO:GO:0071479 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0070914
GO:GO:2000045 GO:GO:0010571 GeneTree:ENSGT00680000100052
OMA:KVIRKFW EMBL:AADN02033529 EMBL:AADN02033530 IPI:IPI00604387
Ensembl:ENSGALT00000013933 Uniprot:F1NYY9
Length = 1564
Score = 355 (130.0 bits), Expect = 1.5e-61, Sum P(4) = 1.5e-61
Identities = 62/138 (44%), Positives = 98/138 (71%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K+ + +L K QGHRVL+++Q +M+D+LE +++ + Y R+DG + + +R +
Sbjct: 1108 SGKLHALDLLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDM 1167
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+ ++ N +D+F+F+L+T+ GGLG NLT A+ VI +D DWNP+ D QA +RA R+GQ + V
Sbjct: 1168 VADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1227
Query: 865 TVYRLITRGTIEEKVYHR 882
TVYRLI +GTIEE++ R
Sbjct: 1228 TVYRLICKGTIEERILQR 1245
Score = 248 (92.4 bits), Expect = 1.5e-61, Sum P(4) = 1.5e-61
Identities = 63/208 (30%), Positives = 109/208 (52%)
Query: 538 LLITTYEQLRLLGEKLLD-VEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPI 596
++IT+Y QL + K V+W Y VLDE +++ ++ + Q Q +R+++TG PI
Sbjct: 631 VVITSY-QLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPI 689
Query: 597 QNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLI 656
QN ++ELW+L F+ P F F+ I N S + + R ++L+
Sbjct: 690 QNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHA-ENKSAIDENQLSRLHMILK--- 745
Query: 657 MPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSR------- 709
P++LRR+K DV +L K E +++C T Q+ +Y+A ++ +L S
Sbjct: 746 -PFMLRRIKKDVENELSDKIEILMYCQQTSRQKLLYQALKNKISIDDLLQSSMGTTQQAQ 804
Query: 710 ---NSLYGIDVM-RKICNHPDLLEREQS 733
+SL + + RK+CNHP+L ER+++
Sbjct: 805 TTTSSLMNLVMQFRKVCNHPELFERQET 832
Score = 166 (63.5 bits), Expect = 1.5e-61, Sum P(4) = 1.5e-61
Identities = 36/95 (37%), Positives = 55/95 (57%)
Query: 387 TLEGGLKIPE-SIFNN-LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL 444
++ G IP+ +IFN L YQ G+ WL L+ Q GI+ DEMGLGKT+Q ++ L L
Sbjct: 506 SIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHL 565
Query: 445 -HFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHV 478
N++ P +++ P + L W +E ++ P F V
Sbjct: 566 AERENIWGPFLIISPASTLNNWHQEFARFVPKFKV 600
Score = 62 (26.9 bits), Expect = 1.5e-61, Sum P(4) = 1.5e-61
Identities = 25/101 (24%), Positives = 45/101 (44%)
Query: 99 DDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSK 158
DD T+ ED + + S + L + L + K L ++K KEL + S
Sbjct: 136 DDSSDTDSPSDEDGEDEEEFSLSREELHNMLRLHKYKKLHQSKYSKDKELQQYQ--YYSA 193
Query: 159 GI--EHDKFIQDLVKEEHR--PKRKSKEAQKPGKDRSKQQK 195
G+ +D + + ++ H PK+K + +K K + K+ K
Sbjct: 194 GLLSTYDPYYE---QQRHLLGPKKKKFKEEKKLKGKLKKVK 231
Score = 49 (22.3 bits), Expect = 1.6e-59, Sum P(5) = 1.6e-59
Identities = 23/113 (20%), Positives = 47/113 (41%)
Query: 87 LRRVSTKE--DNDIDDGDSTEQDGREDE---KSAVQASPNDMTLQHALTADRLKSLK-KT 140
L++V K D D+ +S E + + K + P +H ++ ++L + + K
Sbjct: 227 LKKVKKKRRRDEDLSSEESPEHHHHQTKVFAKFSHDTPPPGSKKKH-MSIEQLNARRRKV 285
Query: 141 KAQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQ 193
+VK+ PK K + F+ + K H+ R+ + A + K+
Sbjct: 286 WLSIVKK--ELPKAYKQKASARNLFLTNSKKLAHQCMREVRRAALQAQKNCKE 336
Score = 41 (19.5 bits), Expect = 8.4e-08, Sum P(3) = 8.4e-08
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 671 QLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRN 710
Q + T + L C T E+R + RA SE+++++ N
Sbjct: 1223 QTKQVTVYRLICKGTIEERILQRA-KEKSEIQRMVISGGN 1261
Score = 40 (19.1 bits), Expect = 1.6e-59, Sum P(5) = 1.6e-59
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 49 PHDKS-ESIDPSSTSQEKLYNKLRAVEFE 76
P D+ E + S S+E+L+N LR +++
Sbjct: 144 PSDEDGEDEEEFSLSREELHNMLRLHKYK 172
>DICTYBASE|DDB_G0284171 [details] [associations]
symbol:DDB_G0284171 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 dictyBase:DDB_G0284171
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006357 EMBL:AAFI02000063 GO:GO:0004003 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907
KO:K11367 RefSeq:XP_638708.1 ProteinModelPortal:Q54Q16
STRING:Q54Q16 EnsemblProtists:DDB0220640 GeneID:8624452
KEGG:ddi:DDB_G0284171 InParanoid:Q54Q16 OMA:DINATEF
ProtClustDB:CLSZ2732060 Uniprot:Q54Q16
Length = 1917
Score = 560 (202.2 bits), Expect = 1.8e-61, Sum P(5) = 1.8e-61
Identities = 138/459 (30%), Positives = 237/459 (51%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
+L+TTY+ + L ++W + +DE HR++N + + V K T +R+++TG P+Q
Sbjct: 865 VLLTTYDFILKDKNTLGTIKWEFLAVDEAHRLKNSESVLHEVLKLYNTTNRLLVTGTPLQ 924
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N L ELW+L +F+ P K L F+ ++ S L+ + L ++
Sbjct: 925 NSLKELWNLLNFLMPNKFTSLKDFQDQY------------SDLKENDQI---AQLHSVLK 969
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD-GSRNSLYGID 716
P+LLRR+K DV LP KTE +L L+ Q+ Y+ L + E G + +L I
Sbjct: 970 PHLLRRIKKDVEKSLPPKTERILRVDLSNVQKKYYKWILTKNFQELNKGKGEKTTLLNIM 1029
Query: 717 V-MRKICNHPDLLEREQS-CQI--PDYGNP--ERSEKMKVVAQVLKVWKDQGHRVLLFAQ 770
++K CNHP L + + C++ D + S K+ ++ ++L K+ GHRVL+F+Q
Sbjct: 1030 TELKKTCNHPYLYQNARDECELGAKDLLDSMIRASGKLVLLDKLLIRLKETGHRVLIFSQ 1089
Query: 771 TQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYN--NSSDVFIFILTTKVGGLGT 828
+MLDIL +L ++++R+DG ++R +D +N +S D F F+L+TK GGLG
Sbjct: 1090 MVRMLDILADYLKGRSFQFQRLDGSMSREKRSQAMDRFNAVDSPD-FCFLLSTKAGGLGI 1148
Query: 829 NLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHF 888
NL+ A+ VIIFD DWNP D+QA RA RIGQK V +YRL+++ ++EE + R K
Sbjct: 1149 NLSTADTVIIFDSDWNPQNDLQAEARAHRIGQKNHVNIYRLVSKSSVEEDILERAKQKMV 1208
Query: 889 LTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTE--TSNIFSQLSEDVNVVGXXXXXX 946
L + +++ ++ + K+ + N + + +F + E+ N +
Sbjct: 1209 LDHLVIQTMEKSQTAKSNTPNNSNVFNKEELEAILKFGAEELFKETGEEANPIEEMDIDE 1268
Query: 947 XXXXXXXAASANADDAVGDKENNLEIGSSRRKGKEKVDN 985
++++ A + N+ + + KE+ N
Sbjct: 1269 ILSRAETREASDSTTAGEELLNSFRVANFSTTSKEEQQN 1307
Score = 160 (61.4 bits), Expect = 1.8e-61, Sum P(5) = 1.8e-61
Identities = 34/78 (43%), Positives = 44/78 (56%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYK-PSIVVCPVT 460
L DYQ G+ WL I+ DEMGLGKTIQ +SFL L K P +VV P++
Sbjct: 755 LRDYQMEGLNWLVHSWMNNTNVILADEMGLGKTIQTISFLSYLFNEQDIKGPFLVVVPLS 814
Query: 461 LLRQWKREAEKWYPSFHV 478
+ W+RE KW P+ +V
Sbjct: 815 TIENWQREFAKWAPAMNV 832
Score = 54 (24.1 bits), Expect = 1.8e-61, Sum P(5) = 1.8e-61
Identities = 28/149 (18%), Positives = 55/149 (36%)
Query: 964 GDKENNLEIGSSRRKGKEKVDN-IGDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEE 1022
GD NN +S K +N D+ D++ N + D + + + N ++
Sbjct: 1611 GDNNNNNNNNNSSNNRKRTTNNKYSDDDDDDDNDKDNDNDEDYMEEEEKKEKTKNTRTKK 1670
Query: 1023 KMRLEEQASQVAQRAAEAL-RQS---RMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGST 1078
+++ EE ++ + R S + R T T + T+ + SS K S
Sbjct: 1671 RIKSEELQKEILSPKKTSFGRLSVPPNKMGERSPSKSTTTTTTTTTSSSKSSRNSKHHSD 1730
Query: 1079 VGSQLIKPLEGSSSNKTGEFNSFGAGASA 1107
+ + +S G S + +S+
Sbjct: 1731 DDDDDYRDKDSNSGRGRGRGRSSNSSSSS 1759
Score = 52 (23.4 bits), Expect = 1.8e-61, Sum P(5) = 1.8e-61
Identities = 21/104 (20%), Positives = 52/104 (50%)
Query: 90 VSTKEDNDIDDGDST-EQDGREDEKSAVQASPND-----MTLQHALTADR-LKSLKKTKA 142
+S + N+ +S+ E E+E + + +PN +T Q A ++ L+ + K K+
Sbjct: 214 ISNFKGNESSSSESSSESSSSEEESESQEDTPNKQRNKVLTQQLASESEEELQPVNKKKS 273
Query: 143 QLVKEL-SHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQK 185
+VK++ S F + + +E ++ +D ++ P +++++
Sbjct: 274 TMVKKVDSDFE---SEEDVEEEQSGKDN-DSDYEPSESEEQSEE 313
Score = 52 (23.4 bits), Expect = 2.5e-50, Sum P(5) = 2.5e-50
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 489 GFRKKRAKSSDTDNDGEGSHDSDYEGN 515
G + KR S++D++ E DSDYE N
Sbjct: 349 GRQAKRITYSESDSE-ESESDSDYEPN 374
Score = 51 (23.0 bits), Expect = 3.6e-61, Sum P(6) = 3.6e-61
Identities = 18/71 (25%), Positives = 30/71 (42%)
Query: 52 KSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGRED 111
+S S + S SQE NK R + + + L+ V+ K+ + DS + + ED
Sbjct: 230 ESSSSEEESESQEDTPNKQRNKVLTQQLASESEEELQPVNKKKSTMVKKVDS-DFESEED 288
Query: 112 EKSAVQASPND 122
+ ND
Sbjct: 289 VEEEQSGKDND 299
Score = 46 (21.3 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 493 KRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
K KSS ++ND S S + SS N
Sbjct: 1870 KMKKSSSSNNDSSSSSSSRSSNSSSSNN 1897
Score = 45 (20.9 bits), Expect = 1.9e-05, Sum P(5) = 1.9e-05
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 491 RKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKK 523
R K SD D+D + D+D + + KK
Sbjct: 1628 RTTNNKYSDDDDDDDNDKDNDNDEDYMEEEEKK 1660
Score = 44 (20.5 bits), Expect = 1.2e-60, Sum P(5) = 1.2e-60
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 84 VDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQH 127
V+++ S+ D D D D + + ++ S + T+ H
Sbjct: 425 VNNVFSSSSSSDEDYSDNDKKNKKSKRTKRKNKTESDEESTITH 468
Score = 41 (19.5 bits), Expect = 1.8e-61, Sum P(5) = 1.8e-61
Identities = 8/28 (28%), Positives = 20/28 (71%)
Query: 1140 SSSANVARFADTRTSRSSKNASDVQPEI 1167
SSS++ +R +++ +S +S ++S +P +
Sbjct: 1881 SSSSSSSRSSNSSSSNNSNSSSSSKPAL 1908
Score = 40 (19.1 bits), Expect = 3.6e-61, Sum P(6) = 3.6e-61
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 172 EEHRPKRKSKEAQKPGKDRSKQQKTVS 198
+ + +KSK ++ K S ++ T++
Sbjct: 441 DNDKKNKKSKRTKRKNKTESDEESTIT 467
Score = 39 (18.8 bits), Expect = 7.0e-05, Sum P(5) = 7.0e-05
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 499 DTDNDGEGSHDSDY----EGNLSSRNPKKWDLLINRVLRSE 535
D DND + +D DY E ++N + + + L+ E
Sbjct: 1640 DDDNDKDNDNDEDYMEEEEKKEKTKNTRTKKRIKSEELQKE 1680
Score = 38 (18.4 bits), Expect = 1.3e-59, Sum P(5) = 1.3e-59
Identities = 20/92 (21%), Positives = 41/92 (44%)
Query: 1070 SVRKKFGSTVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSS-ELLARIRGNQENAV 1128
S KK+ ++G ++ L+ S + +S SA K +S + L + + +
Sbjct: 1817 SKTKKYLLSLGKEISIILDEKKSANIKDLDSH-LWYSASKYTASGGKELKSLYDKMKKSS 1875
Query: 1129 GAGLERQFEVASSSANVARFADTRTSRSSKNA 1160
+ + +S S+N + ++ +S SSK A
Sbjct: 1876 SSNNDSSSSSSSRSSNSSSSNNSNSSSSSKPA 1907
Score = 38 (18.4 bits), Expect = 5.4e-06, Sum P(6) = 5.4e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 653 RDLIMPYLLR-RMKADVNAQLPKKTEHVLFCSL 684
R++ P ++ R+K D+N KK +L SL
Sbjct: 1349 RNISDPVVITARLKKDINQIYNKKEIKILIRSL 1381
Score = 37 (18.1 bits), Expect = 1.7e-59, Sum P(5) = 1.7e-59
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 997 LKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALR 1042
LKSL+D S+ N+D+ ++ S + + AL+
Sbjct: 1864 LKSLYDKMKKSSSSNNDSSSSSSSRSSNSSSSNNSNSSSSSKPALK 1909
Score = 37 (18.1 bits), Expect = 6.5e-48, Sum P(4) = 6.5e-48
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 493 KRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKW-DLLINRVLRSES 536
K +SS +++ E S S+ E P K + ++ + L SES
Sbjct: 218 KGNESSSSESSSESS-SSEEESESQEDTPNKQRNKVLTQQLASES 261
Score = 37 (18.1 bits), Expect = 0.00011, Sum P(5) = 0.00011
Identities = 23/87 (26%), Positives = 41/87 (47%)
Query: 491 RKKRAKSSDTDNDGEGSHDSD------YEGNLSSR-----NPKKWDLLINRVLRSESGLL 539
R + SS + + +H+SD Y+ NL + +P K +LL N S+S +
Sbjct: 1751 RSSNSSSSSSSSSRNKNHESDEEDDKYYDKNLLRKCQQYLSPIK-ELLENFRSLSDSKVQ 1809
Query: 540 ITTYEQLRLLGEKLLDVEWGYAV-LDE 565
I+ E++ + LL + ++ LDE
Sbjct: 1810 ISREEKVSKTKKYLLSLGKEISIILDE 1836
>CGD|CAL0005444 [details] [associations]
symbol:SNF2 species:5476 "Candida albicans" [GO:0016514
"SWI/SNF complex" evidence=IPI] [GO:0009405 "pathogenesis"
evidence=IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0001102 "RNA polymerase II activating
transcription factor binding" evidence=IEA] [GO:0070577 "histone
acetyl-lysine binding" evidence=IEA] [GO:0031492 "nucleosomal DNA
binding" evidence=IEA] [GO:0016586 "RSC complex" evidence=IEA]
[GO:0044182 "filamentous growth of a population of unicellular
organisms" evidence=IMP] [GO:1900430 "positive regulation of
filamentous growth of a population of unicellular organisms"
evidence=IMP] [GO:0036178 "filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900442 "positive regulation of filamentous growth of a
population of unicellular organisms in response to neutral pH"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] [GO:0042766 "nucleosome mobilization" evidence=IEA]
[GO:0005987 "sucrose catabolic process" evidence=IEA] [GO:1900231
"regulation of single-species biofilm formation on inanimate
substrate" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0042148 "strand invasion"
evidence=IEA] [GO:0044109 "cellular alcohol catabolic process"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=IEA] [GO:0031496 "positive regulation of mating type
switching" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0061412 "positive regulation of
transcription from RNA polymerase II promoter in response to amino
acid starvation" evidence=IEA] [GO:0036244 "cellular response to
neutral pH" evidence=IMP] [GO:0071216 "cellular response to biotic
stimulus" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 569 (205.4 bits), Expect = 1.9e-61, Sum P(3) = 1.9e-61
Identities = 132/372 (35%), Positives = 211/372 (56%)
Query: 538 LLITTYEQLRLLGEKLLD-VEWGYAVLDEGHRIRNPNAEISLVCKQ-LQTVHRIIMTGAP 595
L++TT+E + + + LL ++W + ++DEGHR++N N+++S Q + +R+I+TG P
Sbjct: 882 LVLTTFEYV-IKDKGLLGRIKWVHMIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTP 940
Query: 596 IQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDL 655
+QN L ELW+L +FV P + F+ F P G + L L +
Sbjct: 941 LQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELTEEETLLVIRRLHKV 1000
Query: 656 IMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVE--QILDGS----- 708
+ P+LLRR+K DV LP K E V+ C + Q +Y+ L + + +GS
Sbjct: 1001 LRPFLLRRLKKDVEKDLPNKVEKVVKCKSSALQSKLYQQMLRYNMLYAGDPANGSVPVTI 1060
Query: 709 RNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVWKDQGHR 764
+N+ I ++KICNHP + E ++ P+ ++ + K +++ +VL +K GH+
Sbjct: 1061 KNANNQIMQLKKICNHPFVYEEVENLINPNIETNDQIWRVAGKFELLDKVLPKFKATGHK 1120
Query: 765 VLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKV 823
VL+F Q Q+++I+E FL G +Y R+DG T R L+ +N SD F F+L+T+
Sbjct: 1121 VLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDLLKSFNAPDSDYFCFLLSTRA 1180
Query: 824 GGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQ 883
GGLG NL A+ VIIFD DWNP D+QA++RA RIGQK +V + RLIT ++EE + R
Sbjct: 1181 GGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSVEEMILERA 1240
Query: 884 IYKHFLTNKILK 895
K + K+++
Sbjct: 1241 HKKLEIDGKVIQ 1252
Score = 154 (59.3 bits), Expect = 1.9e-61, Sum P(3) = 1.9e-61
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L +YQ G+QW+ L GI+ DEMGLGKTIQ +S L L + P +V+ P++
Sbjct: 781 LKEYQLKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLVEVKKIPGPFLVIVPLS 840
Query: 461 LLRQWKREAEKWYPS 475
+ W E EKW PS
Sbjct: 841 TVTNWNLEFEKWAPS 855
Score = 49 (22.3 bits), Expect = 1.9e-61, Sum P(3) = 1.9e-61
Identities = 13/77 (16%), Positives = 37/77 (48%)
Query: 120 PNDMTLQHALTA-DRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKR 178
P +Q A+ ++K + QL E K + + ++ +F Q +++ + ++
Sbjct: 5 PTREDIQRAIQRWHQMKQQYGDQVQLNPEFVKLTKFLNTLKMQQQRFQQQYQQQQQQQQQ 64
Query: 179 KSKEAQKPGKDRSKQQK 195
+ ++ Q+ + + +QQ+
Sbjct: 65 QQQQQQQQQQQQQQQQQ 81
Score = 45 (20.9 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 470 EKWYPSFHVELLHDSAQDLGFRKKRAKSS 498
+++YP ++V + H A D+ +K+ A S
Sbjct: 1545 KRFYPDYYVLIKHPIALDV-IKKRTASKS 1572
Score = 37 (18.1 bits), Expect = 8.9e-05, Sum P(3) = 8.9e-05
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 987 GDEVDEETNILKSLFDA 1003
G + D+ T++LKS F+A
Sbjct: 1151 GTKADDRTDLLKS-FNA 1166
>UNIPROTKB|Q5AM49 [details] [associations]
symbol:SNF2 "Putative uncharacterized protein SNF2"
species:237561 "Candida albicans SC5314" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0009405
"pathogenesis" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=IPI] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0036178 "filamentous growth of a population of unicellular
organisms in response to neutral pH" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:0036244 "cellular
response to neutral pH" evidence=IMP] [GO:0044182 "filamentous
growth of a population of unicellular organisms" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:1900430 "positive regulation of filamentous growth of a
population of unicellular organisms" evidence=IMP] [GO:1900442
"positive regulation of filamentous growth of a population of
unicellular organisms in response to neutral pH" evidence=IMP]
[GO:1900445 "positive regulation of filamentous growth of a
population of unicellular organisms in response to biotic stimulus"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 CGD:CAL0005444 GO:GO:0005524 GO:GO:0071216
GO:GO:0036244 GO:GO:0036180 GO:GO:0036178 GO:GO:0009405
GO:GO:1900445 GO:GO:1900442 GO:GO:0006355 GO:GO:0003677
GO:GO:0016514 GO:GO:0004386 EMBL:AACQ01000007 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204 KO:K11786
RefSeq:XP_722570.1 ProteinModelPortal:Q5AM49 MINT:MINT-2832160
STRING:Q5AM49 GeneID:3635855 KEGG:cal:CaO19.1526 Uniprot:Q5AM49
Length = 1690
Score = 569 (205.4 bits), Expect = 1.9e-61, Sum P(3) = 1.9e-61
Identities = 132/372 (35%), Positives = 211/372 (56%)
Query: 538 LLITTYEQLRLLGEKLLD-VEWGYAVLDEGHRIRNPNAEISLVCKQ-LQTVHRIIMTGAP 595
L++TT+E + + + LL ++W + ++DEGHR++N N+++S Q + +R+I+TG P
Sbjct: 882 LVLTTFEYV-IKDKGLLGRIKWVHMIIDEGHRMKNANSKLSETLTQNYHSDYRLILTGTP 940
Query: 596 IQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDL 655
+QN L ELW+L +FV P + F+ F P G + L L +
Sbjct: 941 LQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIELTEEETLLVIRRLHKV 1000
Query: 656 IMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVE--QILDGS----- 708
+ P+LLRR+K DV LP K E V+ C + Q +Y+ L + + +GS
Sbjct: 1001 LRPFLLRRLKKDVEKDLPNKVEKVVKCKSSALQSKLYQQMLRYNMLYAGDPANGSVPVTI 1060
Query: 709 RNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVWKDQGHR 764
+N+ I ++KICNHP + E ++ P+ ++ + K +++ +VL +K GH+
Sbjct: 1061 KNANNQIMQLKKICNHPFVYEEVENLINPNIETNDQIWRVAGKFELLDKVLPKFKATGHK 1120
Query: 765 VLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKV 823
VL+F Q Q+++I+E FL G +Y R+DG T R L+ +N SD F F+L+T+
Sbjct: 1121 VLIFFQMTQIMNIMEDFLRFRGMKYMRLDGGTKADDRTDLLKSFNAPDSDYFCFLLSTRA 1180
Query: 824 GGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQ 883
GGLG NL A+ VIIFD DWNP D+QA++RA RIGQK +V + RLIT ++EE + R
Sbjct: 1181 GGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRILRLITENSVEEMILERA 1240
Query: 884 IYKHFLTNKILK 895
K + K+++
Sbjct: 1241 HKKLEIDGKVIQ 1252
Score = 154 (59.3 bits), Expect = 1.9e-61, Sum P(3) = 1.9e-61
Identities = 32/75 (42%), Positives = 43/75 (57%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L +YQ G+QW+ L GI+ DEMGLGKTIQ +S L L + P +V+ P++
Sbjct: 781 LKEYQLKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLVEVKKIPGPFLVIVPLS 840
Query: 461 LLRQWKREAEKWYPS 475
+ W E EKW PS
Sbjct: 841 TVTNWNLEFEKWAPS 855
Score = 49 (22.3 bits), Expect = 1.9e-61, Sum P(3) = 1.9e-61
Identities = 13/77 (16%), Positives = 37/77 (48%)
Query: 120 PNDMTLQHALTA-DRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKR 178
P +Q A+ ++K + QL E K + + ++ +F Q +++ + ++
Sbjct: 5 PTREDIQRAIQRWHQMKQQYGDQVQLNPEFVKLTKFLNTLKMQQQRFQQQYQQQQQQQQQ 64
Query: 179 KSKEAQKPGKDRSKQQK 195
+ ++ Q+ + + +QQ+
Sbjct: 65 QQQQQQQQQQQQQQQQQ 81
Score = 45 (20.9 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 470 EKWYPSFHVELLHDSAQDLGFRKKRAKSS 498
+++YP ++V + H A D+ +K+ A S
Sbjct: 1545 KRFYPDYYVLIKHPIALDV-IKKRTASKS 1572
Score = 37 (18.1 bits), Expect = 8.9e-05, Sum P(3) = 8.9e-05
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 987 GDEVDEETNILKSLFDA 1003
G + D+ T++LKS F+A
Sbjct: 1151 GTKADDRTDLLKS-FNA 1166
>UNIPROTKB|F1RTI9 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:CU695129 Ensembl:ENSSSCT00000013830 Uniprot:F1RTI9
Length = 1073
Score = 550 (198.7 bits), Expect = 2.0e-61, Sum P(4) = 2.0e-61
Identities = 141/405 (34%), Positives = 223/405 (55%)
Query: 529 NRVLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV 586
+ ++ E + +T+YE + + EK + W Y V+DE HRI+N +++S + ++ ++
Sbjct: 279 DEMMPGEWDVCVTSYEMV--IKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKST 336
Query: 587 HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAY 646
+R+++TG P+QN L ELW+L +F+ P F++ F +G
Sbjct: 337 NRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQ--------KLVE 388
Query: 647 RCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD 706
R VL+ P+LLRR+K DV LP K E ++ L++ QR Y L +++ +
Sbjct: 389 RLHAVLK----PFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMK-DIDVLNS 443
Query: 707 -GSRNSLYGIDVM---RKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVW 758
G + + ++++ RK CNHP L + + P Y E S KM V+ ++L
Sbjct: 444 AGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG--PPYTTDEHIVSNSGKMVVLDKLLAKL 501
Query: 759 KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTP------------VKQRMALID 806
K+QG RVL+F+Q ++LDILE + + GYEY R+DG TP ++R I+
Sbjct: 502 KEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEERENGFLQIYFRRRREAIE 561
Query: 807 EYN--NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+N NSS FIF+L+T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQK+ V
Sbjct: 562 AFNVPNSSR-FIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPV 620
Query: 865 TVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMK 909
V+RLIT T+EE++ R K L + ++ QQ R ++ K
Sbjct: 621 RVFRLITDNTVEERIVERAEIKLRLDSIVI---QQGRLIDQQSNK 662
Score = 172 (65.6 bits), Expect = 2.0e-61, Sum P(4) = 2.0e-61
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL L+ GI+ DEMGLGKT+Q ++ LG L H+ N+ P +V+ P +
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 245
Query: 461 LLRQWKREAEKWYPSFHV 478
L W E ++W PS V
Sbjct: 246 TLHNWMNEFKRWVPSLRV 263
Score = 47 (21.6 bits), Expect = 4.6e-07, Sum P(4) = 4.6e-07
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QR ++ MKD+ LN G NI QL + N
Sbjct: 426 QREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCN 464
Score = 43 (20.2 bits), Expect = 2.0e-61, Sum P(4) = 2.0e-61
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVD 991
++ N I ++ + G++ +DNI EV+
Sbjct: 866 RDFNQFIKANEKYGRDDIDNIAREVE 891
Score = 37 (18.1 bits), Expect = 2.0e-61, Sum P(4) = 2.0e-61
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 280 AAQARPSTKLLDPESLPKL 298
AA+A S K +DPE K+
Sbjct: 72 AAKASKSEKEMDPEYEEKM 90
Score = 37 (18.1 bits), Expect = 7.6e-48, Sum P(3) = 7.6e-48
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 492 KKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINR 530
K AK+S ++ + D +YE + + K+++ L+ +
Sbjct: 70 KLAAKASKSEKE----MDPEYEEKMKADRAKRFEFLLKQ 104
>ASPGD|ASPL0000018137 [details] [associations]
symbol:AN4187 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005576
"extracellular region" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 EMBL:BN001302
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 EMBL:AACD01000068 OrthoDB:EOG44XNQZ
RefSeq:XP_661791.1 ProteinModelPortal:Q5B5J3 STRING:Q5B5J3
EnsemblFungi:CADANIAT00004481 GeneID:2873610 KEGG:ani:AN4187.2
Uniprot:Q5B5J3
Length = 1904
Score = 339 (124.4 bits), Expect = 2.0e-61, Sum P(4) = 2.0e-61
Identities = 77/250 (30%), Positives = 133/250 (53%)
Query: 534 SESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTG 593
+++ +++T+Y+ R + L + W Y VLDEGH I+NP A++++ K++ + HR+I++G
Sbjct: 1424 ADADIVVTSYDICRNDNDVLRPISWNYCVLDEGHLIKNPKAKVTMAVKRINSNHRLILSG 1483
Query: 594 APIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLR 653
PIQN + ELWSLFDF+ PG LG VF FA PI ++ +S Q + A L
Sbjct: 1484 TPIQNNVLELWSLFDFLMPGFLGTEKVFLDRFAKPIATSRFSKSSKEQEAGALAIEA-LH 1542
Query: 654 DLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSE--VEQILDGSRNS 711
++P+LLRR+K +V LP K +C +E Q+ ++ F + +++ + S +
Sbjct: 1543 KQVLPFLLRRLKEEVLNDLPPKIIQNYYCDPSELQKKLFEDFTKKEQKALQEKMGSSEKA 1602
Query: 712 -----LYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVL 766
+ MR++CN P L+ +E G+ + +E + + + +D H
Sbjct: 1603 DKEHIFQALQYMRRLCNSPALVVKE--------GHKQYNEVQQYLQEKKSYLRDVSHAPK 1654
Query: 767 LFAQTQQMLD 776
L A +LD
Sbjct: 1655 LSALKDLLLD 1664
Score = 314 (115.6 bits), Expect = 2.0e-61, Sum P(4) = 2.0e-61
Identities = 66/168 (39%), Positives = 99/168 (58%)
Query: 763 HRVLLFAQTQQMLDILESFLIAS---GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFIL 819
HR L+F Q ++MLDI++S ++ ++ R+DG +R +++ +N+ + +L
Sbjct: 1686 HRALVFCQMKEMLDIVQSEVLQKLLPSVQFLRLDGAVEATRRQDIVNRFNSDPSYDVLLL 1745
Query: 820 TTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKV 879
TT VGGLG NLTGA+ VI + DWNP D+QA +RA RIGQK+ V VYRLITRGT+EEK+
Sbjct: 1746 TTSVGGLGLNLTGADTVIFVEHDWNPQKDIQAMDRAHRIGQKKVVNVYRLITRGTLEEKI 1805
Query: 880 YHRQIYKHFLTNKILKNPQQRRF--FKARNMKDLFTLNDDGNGGSTET 925
+ Q +K + + ++ N Q + DLF L + T
Sbjct: 1806 LNLQRFKIDVASTVV-NQQNAGLNTMDTDQLLDLFNLGETAENAEKPT 1852
Score = 132 (51.5 bits), Expect = 2.0e-61, Sum P(4) = 2.0e-61
Identities = 31/94 (32%), Positives = 52/94 (55%)
Query: 393 KIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH------F 446
K+P +I L YQ+ GV WL L+ GI+ D+MGLGKT+Q + + + H F
Sbjct: 1309 KLPVAIKAELRPYQQEGVNWLAFLNRYNLHGILCDDMGLGKTLQTICIVASDHHMRAEDF 1368
Query: 447 SNMYKP------SIVVCPVTLLRQWKREAEKWYP 474
+ +P S+++CP +L W++E +++ P
Sbjct: 1369 AKTQRPESRKVPSLIICPPSLSGHWQQEVKQYAP 1402
Score = 50 (22.7 bits), Expect = 2.0e-61, Sum P(4) = 2.0e-61
Identities = 21/76 (27%), Positives = 35/76 (46%)
Query: 104 TEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVK----ELSHFPKGITSKG 159
TE+ ++SA + + ++H +A + + K LVK + S P+ +K
Sbjct: 988 TEESAELQQRSATAVA---VLVEHYTSAAKRGPVDKVIGNLVKYCCVDTSETPEFERNK- 1043
Query: 160 IEHDKFIQDLVKEEHR 175
EH+ I L KEE R
Sbjct: 1044 -EHEGLILSLRKEEDR 1058
Score = 46 (21.3 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 21/91 (23%), Positives = 46/91 (50%)
Query: 484 SAQDLGFRKKRAKSSDTD-NDGEG-SHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLIT 541
+A+ +G A + D + +DGE D + +++ + ++ + + +LR E+ L++
Sbjct: 61 AAKAIGLIVANADTFDPNQDDGEDVKKDEEDVDDVNVKLEEEPISVADELLRLETLDLVS 120
Query: 542 TYEQLR-LLGEKLLDVEWGYAVLDEGHRIRN 571
++ R LLG D E A +D R+++
Sbjct: 121 ILKRGRKLLGSGSKDQELSLAAMDSAARLQH 151
Score = 39 (18.8 bits), Expect = 2.1e-50, Sum P(4) = 2.1e-50
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 510 SDYEGNLSSRNPKKWDLLINRVLRSESGLL--ITTYEQLRLLGE 551
+D E + ++ P+ + L + + S +L +TT+ LRL GE
Sbjct: 574 ADSESSFANLVPRLYPFLRHTITSVRSAVLRALTTF--LRLEGE 615
Score = 37 (18.1 bits), Expect = 4.6e-60, Sum P(4) = 4.6e-60
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 275 RMMSEAAQARPSTKLLDPESLPKLDGPTRPFQRLKTP 311
R + A + L D E LPK G RL +P
Sbjct: 158 RRLGLAGECSDDDLLDDSELLPKTPGLKEAEPRLFSP 194
>ZFIN|ZDB-GENE-040426-968 [details] [associations]
symbol:rad54l "RAD54-like (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA;ISS] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-968 GO:GO:0005524 GO:GO:0046872
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008094 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 CTD:8438
EMBL:BC046050 IPI:IPI00507004 RefSeq:NP_957438.1 UniGene:Dr.78565
PDB:1Z3I PDBsum:1Z3I ProteinModelPortal:Q7ZV09 SMR:Q7ZV09
STRING:Q7ZV09 GeneID:394119 KEGG:dre:394119 InParanoid:Q7ZV09
EvolutionaryTrace:Q7ZV09 NextBio:20815072 ArrayExpress:Q7ZV09
Uniprot:Q7ZV09
Length = 738
Score = 362 (132.5 bits), Expect = 2.2e-61, Sum P(3) = 2.2e-61
Identities = 73/178 (41%), Positives = 111/178 (62%)
Query: 742 PERSEKMKVVAQVLKVWKDQ-GHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQ 800
P+ S KM V+ +L + + +V+L + Q LD+ E Y Y R+DG +K+
Sbjct: 486 PQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKK 545
Query: 801 RMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIG 859
R +++ +NN SS FIF+L++K GG G NL GANR+++FDPDWNP+ D QA R WR G
Sbjct: 546 RAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDG 605
Query: 860 QKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLND 916
QK+ +YRL++ GTIEEK+ RQ +K L++ ++ Q R F +++LF+LN+
Sbjct: 606 QKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSLNE 663
Score = 285 (105.4 bits), Expect = 2.2e-61, Sum P(3) = 2.2e-61
Identities = 71/218 (32%), Positives = 115/218 (52%)
Query: 514 GNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPN 573
G+ + K + + + +R + +LI +YE RL E L + G + DEGHR++N +
Sbjct: 240 GSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSD 299
Query: 574 AEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGG 633
+ L + R++++G PIQN L E +SL FV G LG F+ F +PI G
Sbjct: 300 NQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGR 359
Query: 634 YANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYR 693
A+AS + + L ++ L+RR ++ LP K E V+ C+LT Q+ +Y+
Sbjct: 360 DADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYK 419
Query: 694 AFLASSE-VEQILDG--SRNSLYGIDVMRKICNHPDLL 728
FL ++ VE + G S +SL I ++K+CNHP L+
Sbjct: 420 LFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI 457
Score = 115 (45.5 bits), Expect = 2.2e-61, Sum P(3) = 2.2e-61
Identities = 31/78 (39%), Positives = 43/78 (55%)
Query: 405 YQKVGVQWLWELHCQRA-----GGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSI---- 454
+Q+ GV++LW+ R G I+ DEMGLGKT+Q ++ + L S KP I
Sbjct: 150 HQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVI 209
Query: 455 VVCPVTLLRQWKREAEKW 472
VV P +L+R W E KW
Sbjct: 210 VVSPSSLVRNWYNEVGKW 227
>POMBASE|SPBC1826.01c [details] [associations]
symbol:mot1 "TATA-binding protein associated factor
Mot1 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IC] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0017025 "TBP-class
protein binding" evidence=ISO] [GO:0043234 "protein complex"
evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 PomBase:SPBC1826.01c GO:GO:0005524 GO:GO:0005634
GO:GO:0043234 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0006355 GO:GO:0003677 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016887 GO:GO:0006366 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0017025 EMBL:AB027981 PIR:T39739
RefSeq:NP_596080.2 ProteinModelPortal:O43065 STRING:O43065
EnsemblFungi:SPBC1826.01c.1 GeneID:2539633 KEGG:spo:SPBC1826.01c
OrthoDB:EOG44XNQZ NextBio:20800788 Uniprot:O43065
Length = 1953
Score = 339 (124.4 bits), Expect = 2.3e-61, Sum P(4) = 2.3e-61
Identities = 81/257 (31%), Positives = 134/257 (52%)
Query: 535 ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGA 594
+S +++T+Y+ R ++L+ ++W Y VLDEGH I+N A+++ K L++ HR+I++G
Sbjct: 1465 KSDVVVTSYDICRNDVDELVKIDWNYCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGT 1524
Query: 595 PIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRD 654
PIQN + ELWSLFDF+ PG LG F+ F PI A +S + +
Sbjct: 1525 PIQNNVLELWSLFDFLMPGFLGTEKTFQERFVRPIAASRDAKSSSKERERGTLALEAIHK 1584
Query: 655 LIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD-------- 706
++P++LRR+K DV A LP K +C +++ QR + F++ + + L+
Sbjct: 1585 QVLPFMLRRLKEDVLADLPPKIIQDYYCDMSDLQRKLLNDFVSQLNINEELEDDETEKTQ 1644
Query: 707 GSRNS-------LYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWK 759
G+R + MRK+CNHP L+ E+ +P+R+ +K +A+
Sbjct: 1645 GTRKKKSQKAHIFQALQYMRKLCNHPALILTEK--------HPKRNAIVKQLAKENSGLH 1696
Query: 760 DQGHRVLLFAQTQQMLD 776
D H L A Q + D
Sbjct: 1697 DLKHAPKLTALGQLLRD 1713
Score = 307 (113.1 bits), Expect = 2.3e-61, Sum P(4) = 2.3e-61
Identities = 71/176 (40%), Positives = 100/176 (56%)
Query: 763 HRVLLFAQTQQMLDILESFLIAS---GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFIL 819
HRVL+F Q + MLD++E L+ + Y R+DG +R + ++NN + + +L
Sbjct: 1737 HRVLIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNNDPSIDVLLL 1796
Query: 820 TTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKV 879
TT VGGLG NLTGA+ VI + DWNP D+QA +RA RIGQK+ V VYRLITRG +EEK+
Sbjct: 1797 TTHVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKVVNVYRLITRGCLEEKI 1856
Query: 880 YHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSED 935
Q +K + + ++ N Q + L N + T NI + SED
Sbjct: 1857 MGLQRFKMNVASTVV-NQQNAGLSSIGTDQILDLFNTTADEQQT-VQNIDKEESED 1910
Score = 141 (54.7 bits), Expect = 2.3e-61, Sum P(4) = 2.3e-61
Identities = 38/117 (32%), Positives = 57/117 (48%)
Query: 394 IPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM---- 449
IP I +L YQ+ GV WL L+ GI+ D+MGLGKT+Q + + + H++
Sbjct: 1350 IPVPISADLRKYQQEGVNWLAFLNKYELHGILCDDMGLGKTLQTICIVASDHYNRQKLFE 1409
Query: 450 --------YKPSIVVCPVTLLRQWKREAEKWYPSFHVEL-LHDSAQDLGFRKKRAKS 497
+ PS++VCP TL W++E + P V + A+ R K KS
Sbjct: 1410 ESGSPKFAHVPSLIVCPSTLAGHWQQELSTYAPFLKVSAYVGPPAERAKIRSKMKKS 1466
Score = 48 (22.0 bits), Expect = 2.3e-61, Sum P(4) = 2.3e-61
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 291 DPESLPKLDGPT--RPFQRLKTPFRMPQSEESEV 322
+ E LP +G T +PF +KT P S +S+V
Sbjct: 87 ETEDLPSFNGDTEEKPF--IKTEEGAPASSQSQV 118
Score = 42 (19.8 bits), Expect = 9.8e-61, Sum P(4) = 9.8e-61
Identities = 14/63 (22%), Positives = 31/63 (49%)
Query: 90 VSTKEDNDID--DGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKE 147
V +E D+ +GD+ E+ + E+ A +S + + + LT++ + K + + +
Sbjct: 83 VKKEETEDLPSFNGDTEEKPFIKTEEGAPASSQSQVVVSSNLTSN--SEVSKLEEERLST 140
Query: 148 LSH 150
SH
Sbjct: 141 RSH 143
>UNIPROTKB|P51531 [details] [associations]
symbol:SMARCA2 "Probable global transcription activator
SNF2L2" species:9606 "Homo sapiens" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0035887 "aortic
smooth muscle cell differentiation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0071564 "npBAF complex"
evidence=ISS] [GO:0071565 "nBAF complex" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP;IDA] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IDA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0071778 "WINAC
complex" evidence=IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0030308 "negative regulation of cell
growth" evidence=IMP] [GO:0006338 "chromatin remodeling"
evidence=TAS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=TAS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0008285 GO:GO:0007399
GO:GO:0005654 GO:GO:0030308 GO:GO:0006338 GO:GO:0000122
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 EMBL:CH471071 GO:GO:0004386
Pathway_Interaction_DB:ar_tf_pathway GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0008094 EMBL:X72889 EMBL:D26155 EMBL:AL359076 EMBL:AL138755
IPI:IPI00386718 IPI:IPI00514648 PIR:S39580 PIR:S45251
RefSeq:NP_003061.3 RefSeq:NP_620614.2 UniGene:Hs.298990 PDB:2DAT
PDBsum:2DAT ProteinModelPortal:P51531 SMR:P51531 DIP:DIP-29005N
IntAct:P51531 MINT:MINT-1898892 STRING:P51531 PhosphoSite:P51531
DMDM:212276472 PaxDb:P51531 PRIDE:P51531 DNASU:6595
Ensembl:ENST00000349721 Ensembl:ENST00000357248
Ensembl:ENST00000382194 Ensembl:ENST00000382203 GeneID:6595
KEGG:hsa:6595 UCSC:uc003zhc.3 UCSC:uc003zhd.3 CTD:6595
GeneCards:GC09P002005 HGNC:HGNC:11098 HPA:HPA029981 MIM:600014
MIM:601358 neXtProt:NX_P51531 Orphanet:3051 PharmGKB:PA35948
HOGENOM:HOG000172363 HOVERGEN:HBG056636 InParanoid:P51531
OMA:PQEGMHQ PhylomeDB:P51531 EvolutionaryTrace:P51531
GenomeRNAi:6595 NextBio:25649 PMAP-CutDB:P51531 ArrayExpress:P51531
Bgee:P51531 CleanEx:HS_SMARCA2 Genevestigator:P51531
GermOnline:ENSG00000080503 GO:GO:0035887 Uniprot:P51531
Length = 1590
Score = 336 (123.3 bits), Expect = 2.6e-61, Sum P(5) = 2.6e-61
Identities = 75/200 (37%), Positives = 116/200 (58%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQS-CQIPDYGNP--------ERSEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S + Y N S K +++ ++L
Sbjct: 1001 GAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILP 1060
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+ HRVLLF Q ++ I+E + + Y R+DG T + R AL+ ++N S F
Sbjct: 1061 KLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYF 1120
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ V+IFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 1121 IFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1180
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 1181 EEKILAAAKYKLNVDQKVIQ 1200
Score = 285 (105.4 bits), Expect = 2.6e-61, Sum P(5) = 2.6e-61
Identities = 72/213 (33%), Positives = 112/213 (52%)
Query: 532 LRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRI 589
LRS + +L+TTYE + L + W Y ++DEGHR++N + +++ V RI
Sbjct: 818 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRI 877
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QNKL ELW+L +F+ P FE F P + G L
Sbjct: 878 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--ERVDLNEEETILII 935
Query: 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------SEVE 702
L ++ P+LLRR+K +V +QLP+K E+V+ C ++ Q+ +YR A SE +
Sbjct: 936 RRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKD 995
Query: 703 QILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
+ G +L I +RKICNHP + + E+S
Sbjct: 996 KKGKGGAKTLMNTIMQLRKICNHPYMFQHIEES 1028
Score = 147 (56.8 bits), Expect = 2.6e-61, Sum P(5) = 2.6e-61
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 398 IFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVV 456
I L YQ G++W+ L+ GI+ DEMGLGKTIQ ++ + L + P +++
Sbjct: 720 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 779
Query: 457 CPVTLLRQWKREAEKWYPS 475
P++ L W E +KW PS
Sbjct: 780 VPLSTLSNWTYEFDKWAPS 798
Score = 57 (25.1 bits), Expect = 2.6e-61, Sum P(5) = 2.6e-61
Identities = 23/108 (21%), Positives = 48/108 (44%)
Query: 987 GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRM 1046
G ++ E++ +L+S+F + A ++ +++EE EE+ + ++ A++++
Sbjct: 1485 GSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEE----EEEDEEESESEAKSVKVKIK 1540
Query: 1047 LRSRDDISVPTWTGKSG-TAGAPSSVRKKFGSTVGSQLIKPLEGSSSN 1093
L +DD GK G V F S + EGS ++
Sbjct: 1541 LNKKDDKGRDKGKGKKRPNRGKAKPVVSDFDSDEEQDEREQSEGSGTD 1588
Score = 52 (23.4 bits), Expect = 2.6e-61, Sum P(5) = 2.6e-61
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 88 RRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPN 121
R S + D+D ++ D E+ R++ + + PN
Sbjct: 632 RSDSEESDSDYEEEDEEEESSRQETEEKILLDPN 665
Score = 50 (22.7 bits), Expect = 2.2e-60, Sum P(6) = 2.2e-60
Identities = 28/123 (22%), Positives = 50/123 (40%)
Query: 49 PHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDG 108
P K + +DP QE+ Y +L+A +A + L + D+ + E
Sbjct: 330 PIQKPQGLDPVEILQEREY-RLQA------RIAHRIQELENLPGSLPPDLRTKATVELKA 382
Query: 109 -------REDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIE 161
R+ + V D TL+ AL + K+ K++K Q ++E K + IE
Sbjct: 383 LRLLNFQRQLRQEVVACMRRDTTLETALNS---KAYKRSKRQTLREARMTEKLEKQQKIE 439
Query: 162 HDK 164
++
Sbjct: 440 QER 442
Score = 45 (20.9 bits), Expect = 1.4e-60, Sum P(5) = 1.4e-60
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 90 VSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTL 125
V+ + D++ D D E+D E+E+S+ Q + + L
Sbjct: 629 VAPRSDSEESDSDYEEED--EEEESSRQETEEKILL 662
Score = 43 (20.2 bits), Expect = 2.2e-60, Sum P(5) = 2.2e-60
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 133 RLKSLKKTK--AQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQK 185
+L KK + A L+++ + +T+ EH + KE+ + +R+ K+A++
Sbjct: 516 KLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQ--AQAAKEKKKRRRRKKKAEE 568
Score = 37 (18.1 bits), Expect = 2.2e-60, Sum P(6) = 2.2e-60
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 163 DKFIQDLVKE--EHRPKRKSKEAQKPGKDRSKQQK 195
D+++ +L EH+ + +KE +K + + K ++
Sbjct: 534 DEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEE 568
>UNIPROTKB|K7GMM0 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
GeneID:100188905 RefSeq:XP_003360491.1 Ensembl:ENSSSCT00000034062
Uniprot:K7GMM0
Length = 1057
Score = 548 (198.0 bits), Expect = 2.8e-61, Sum P(4) = 2.8e-61
Identities = 142/405 (35%), Positives = 225/405 (55%)
Query: 529 NRVLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV 586
+ ++ E + +T+YE + + EK + W Y V+DE HRI+N +++S + ++ ++
Sbjct: 279 DEMMPGEWDVCVTSYEMV--IKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKST 336
Query: 587 HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAY 646
+R+++TG P+QN L ELW+L +F+ P F++ F +G
Sbjct: 337 NRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQ--------KLVE 388
Query: 647 RCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD 706
R VL+ P+LLRR+K DV LP K E ++ L++ QR Y L +++ +
Sbjct: 389 RLHAVLK----PFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMK-DIDVLNS 443
Query: 707 -GSRNSLYGIDVM---RKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVW 758
G + + ++++ RK CNHP L + + P Y E S KM V+ ++L
Sbjct: 444 AGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG--PPYTTDEHIVSNSGKMVVLDKLLAKL 501
Query: 759 KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQR------MAL------ID 806
K+QG RVL+F+Q ++LDILE + + GYEY R+DG TP ++R + L I+
Sbjct: 502 KEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVELLGQREAIE 561
Query: 807 EYN--NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+N NSS FIF+L+T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQK+ V
Sbjct: 562 AFNVPNSSR-FIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPV 620
Query: 865 TVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMK 909
V+RLIT T+EE++ R K L + ++ QQ R ++ K
Sbjct: 621 RVFRLITDNTVEERIVERAEIKLRLDSIVI---QQGRLIDQQSNK 662
Score = 172 (65.6 bits), Expect = 2.8e-61, Sum P(4) = 2.8e-61
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL L+ GI+ DEMGLGKT+Q ++ LG L H+ N+ P +V+ P +
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 245
Query: 461 LLRQWKREAEKWYPSFHV 478
L W E ++W PS V
Sbjct: 246 TLHNWMNEFKRWVPSLRV 263
Score = 47 (21.6 bits), Expect = 4.3e-07, Sum P(4) = 4.3e-07
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QR ++ MKD+ LN G NI QL + N
Sbjct: 426 QREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCN 464
Score = 43 (20.2 bits), Expect = 2.8e-61, Sum P(4) = 2.8e-61
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVD 991
++ N I ++ + G++ +DNI EV+
Sbjct: 866 RDFNQFIKANEKYGRDDIDNIAREVE 891
Score = 37 (18.1 bits), Expect = 2.8e-61, Sum P(4) = 2.8e-61
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 280 AAQARPSTKLLDPESLPKL 298
AA+A S K +DPE K+
Sbjct: 72 AAKASKSEKEMDPEYEEKM 90
Score = 37 (18.1 bits), Expect = 1.1e-47, Sum P(3) = 1.1e-47
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 492 KKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINR 530
K AK+S ++ + D +YE + + K+++ L+ +
Sbjct: 70 KLAAKASKSEKE----MDPEYEEKMKADRAKRFEFLLKQ 104
>MGI|MGI:1915392 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10090
"Mus musculus" [GO:0000070 "mitotic sister chromatid segregation"
evidence=ISO] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO] [GO:0003678
"DNA helicase activity" evidence=ISO] [GO:0003779 "actin binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005874 "microtubule" evidence=IEA] [GO:0006200
"ATP catabolic process" evidence=ISO] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006302 "double-strand break repair"
evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=ISO] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0007067 "mitosis" evidence=IEA]
[GO:0010571 "positive regulation of DNA replication involved in S
phase" evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0030307 "positive regulation of cell growth" evidence=ISO]
[GO:0031011 "Ino80 complex" evidence=ISO] [GO:0032508 "DNA duplex
unwinding" evidence=ISO] [GO:0034644 "cellular response to UV"
evidence=ISO] [GO:0043014 "alpha-tubulin binding" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0051225 "spindle
assembly" evidence=ISO] [GO:0051301 "cell division" evidence=IEA]
[GO:0070914 "UV-damage excision repair" evidence=ISO] [GO:0071479
"cellular response to ionizing radiation" evidence=ISO] [GO:2000045
"regulation of G1/S transition of mitotic cell cycle" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 MGI:MGI:1915392 GO:GO:0005524
GO:GO:0005634 GO:GO:0030307 GO:GO:0051301 GO:GO:0051225
GO:GO:0003677 GO:GO:0045944 GO:GO:0016887 GO:GO:0006338
GO:GO:0000070 GO:GO:0031011 GO:GO:0000724 GO:GO:0034644
GO:GO:0005874 GO:GO:0071479 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0003678
GO:GO:0070914 GO:GO:2000045 GO:GO:0010571 EMBL:AL844862 KO:K11665
CTD:54617 GeneTree:ENSGT00680000100052 HOGENOM:HOG000231795
HOVERGEN:HBG057875 OMA:KVIRKFW OrthoDB:EOG4ZKJKF EMBL:AK040612
EMBL:AK129317 EMBL:BC059235 IPI:IPI00378561 IPI:IPI00785415
RefSeq:NP_080850.2 UniGene:Mm.330496 ProteinModelPortal:Q6ZPV2
SMR:Q6ZPV2 IntAct:Q6ZPV2 STRING:Q6ZPV2 PhosphoSite:Q6ZPV2
PaxDb:Q6ZPV2 PRIDE:Q6ZPV2 Ensembl:ENSMUST00000049920
Ensembl:ENSMUST00000110808 GeneID:68142 KEGG:mmu:68142
InParanoid:Q6ZPV2 NextBio:326516 Bgee:Q6ZPV2 Genevestigator:Q6ZPV2
GermOnline:ENSMUSG00000034154 Uniprot:Q6ZPV2
Length = 1559
Score = 348 (127.6 bits), Expect = 3.0e-61, Sum P(5) = 3.0e-61
Identities = 61/138 (44%), Positives = 97/138 (70%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K+ + +L K QGHRVL+++Q +M+D+LE +++ + Y R+DG + + +R +
Sbjct: 1103 SGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDM 1162
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+ ++ +D+F+F+L+T+ GGLG NLT A+ VI +D DWNP+ D QA +RA R+GQ + V
Sbjct: 1163 VADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1222
Query: 865 TVYRLITRGTIEEKVYHR 882
TVYRLI +GTIEE++ R
Sbjct: 1223 TVYRLICKGTIEERILQR 1240
Score = 254 (94.5 bits), Expect = 3.0e-61, Sum P(5) = 3.0e-61
Identities = 66/208 (31%), Positives = 107/208 (51%)
Query: 538 LLITTYEQLRLLGEKLLD-VEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPI 596
++IT+Y QL + K V+W Y VLDE +++ ++ + Q Q +R+++TG PI
Sbjct: 628 VVITSY-QLVVQDVKYFQRVKWQYMVLDEAQALKSSSSVRWKILLQFQCRNRLLLTGTPI 686
Query: 597 QNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLI 656
QN ++ELW+L F+ P F F+ I N S + + R ++L+
Sbjct: 687 QNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHA-ENKSAIDENQLSRLHMILK--- 742
Query: 657 MPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGID 716
P++LRR+K DV +L K E + +C LT Q+ +Y+A +E +L S S
Sbjct: 743 -PFMLRRIKKDVENELSDKIEILTYCQLTSRQKLLYQALKNKISIEDLLQSSMGSTQQAQ 801
Query: 717 ---------VM--RKICNHPDLLEREQS 733
VM RK+CNHP+L ER+++
Sbjct: 802 NTTSSLMNLVMQFRKVCNHPELFERQET 829
Score = 166 (63.5 bits), Expect = 3.0e-61, Sum P(5) = 3.0e-61
Identities = 36/95 (37%), Positives = 55/95 (57%)
Query: 387 TLEGGLKIPE-SIFNN-LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL 444
++ G IP+ +IFN L YQ G+ WL L+ Q GI+ DEMGLGKT+Q ++ L L
Sbjct: 503 SIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHL 562
Query: 445 -HFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHV 478
N++ P +++ P + L W +E ++ P F V
Sbjct: 563 AERENIWGPFLIISPASTLNNWHQEFTRFVPKFKV 597
Score = 62 (26.9 bits), Expect = 3.0e-61, Sum P(5) = 3.0e-61
Identities = 24/111 (21%), Positives = 51/111 (45%)
Query: 87 LRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVK 146
L+ + +++ D S + D E+E S + ++M H +L K +K + ++
Sbjct: 126 LKSILLSDESSEADSQSEDNDDEEEELSLSREELHNMLRLHKYK--KLHQNKYSKDKELQ 183
Query: 147 ELSHFPKGITSKGIEHDKFIQDLVKEEHR--PKRKSKEAQKPGKDRSKQQK 195
+ ++ G+ S +D F + ++ H PK+K + K K + K+ K
Sbjct: 184 QYQYYSAGLLST---YDPFYE---QQRHLLGPKKKKFKEDKKLKAKLKKVK 228
Score = 45 (20.9 bits), Expect = 3.0e-61, Sum P(5) = 3.0e-61
Identities = 25/92 (27%), Positives = 34/92 (36%)
Query: 1065 AGAPSSVRKKFGSTVGS-QLIKPL-EGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRG 1122
AG S R + G GS K +G S T + AGA AG +S+ A
Sbjct: 1425 AGRGHSARSR-GRPKGSGSTAKGAGKGRSRKSTAGSAAAMAGAKAGAAAASAAAYAAYGY 1483
Query: 1123 NQENAVGAGLERQFEVASSSANVARFADTRTS 1154
N + A Q + A +A F + S
Sbjct: 1484 NVSKGISASSPLQTSIVRP-AGLADFGPSSAS 1514
Score = 42 (19.8 bits), Expect = 7.3e-08, Sum P(4) = 7.3e-08
Identities = 19/83 (22%), Positives = 41/83 (49%)
Query: 671 QLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQ-ILDGSR---NSLYGIDVMRKICNHPD 726
Q + T + L C T E+R + RA SE+++ ++ G ++L +V+ + + +
Sbjct: 1218 QTKQVTVYRLICKGTIEERILQRA-KEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDEE 1276
Query: 727 LLEREQSCQIPDYGNPERSEKMK 749
L E++ + + E S ++K
Sbjct: 1277 L-EKKLRLRQEEKRQQEESNRVK 1298
Score = 39 (18.8 bits), Expect = 7.1e-59, Sum P(5) = 7.1e-59
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 349 DTRLEENEDSRDSLDMS 365
D++ E+N+D + L +S
Sbjct: 139 DSQSEDNDDEEEELSLS 155
Score = 39 (18.8 bits), Expect = 7.1e-59, Sum P(5) = 7.1e-59
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 51 DKSESIDPSSTSQEKLYNKLRAVEFE 76
D + + S S+E+L+N LR +++
Sbjct: 144 DNDDEEEELSLSREELHNMLRLHKYK 169
Score = 37 (18.1 bits), Expect = 1.1e-58, Sum P(5) = 1.1e-58
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 218 ETKRDELVRKGILTPFHKLKGFERCIQQPGPSNKQNVPDEQEARSND 264
E+K D KG L F KLK + ++ S++ + D Q ++D
Sbjct: 105 ESKSD----KGNLYNFSKLKKSRKWLKSILLSDESSEADSQSEDNDD 147
>UNIPROTKB|A1L4Z4 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:DAAA02009002 EMBL:BT029781 IPI:IPI00691258
RefSeq:NP_001124238.1 UniGene:Bt.106758 SMR:A1L4Z4 STRING:A1L4Z4
Ensembl:ENSBTAT00000026513 GeneID:100140639 KEGG:bta:100140639
InParanoid:A1L4Z4 NextBio:20790996 Uniprot:A1L4Z4
Length = 749
Score = 376 (137.4 bits), Expect = 3.0e-61, Sum P(3) = 3.0e-61
Identities = 75/178 (42%), Positives = 114/178 (64%)
Query: 742 PERSEKMKVVAQVLKVWKDQGH-RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQ 800
P+ S KM V+ +L V + + +V+L + Q LD+ E A Y Y R+DG +K+
Sbjct: 493 PQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKK 552
Query: 801 RMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIG 859
R +++ +NN SS F+F+L++K GG G NL GANR+++FDPDWNP+ D QA R WR G
Sbjct: 553 RAKVVERFNNPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDG 612
Query: 860 QKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLND 916
QK+ +YRL++ GTIEEK++ RQ +K L++ ++ Q R F +K+LFTL++
Sbjct: 613 QKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELFTLDE 670
Score = 263 (97.6 bits), Expect = 3.0e-61, Sum P(3) = 3.0e-61
Identities = 73/220 (33%), Positives = 108/220 (49%)
Query: 513 EGNLSSRNPKKWDLLIN-RVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRN 571
+G +K + +N R R S +LI +YE RL L G + DEGHR++N
Sbjct: 245 DGGSKDEIDQKLEGFMNQRGARVPSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKN 304
Query: 572 PNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITV 631
+ L T R++++G PIQN L E +SL FV G LG F+ F +PI
Sbjct: 305 SENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKHFELPILK 364
Query: 632 GGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAV 691
G A AS L ++ L+RR ++ LP K E V+ C LT Q +
Sbjct: 365 GRDAAASEEDRRVGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQIEL 424
Query: 692 YRAFLASSE-VEQILDG--SRNSLYGIDVMRKICNHPDLL 728
Y+ FL ++ E++ +G S +SL I ++K+CNHP L+
Sbjct: 425 YKRFLRQAKPAEELREGKMSVSSLSSITSLKKLCNHPALI 464
Score = 121 (47.7 bits), Expect = 3.0e-61, Sum P(3) = 3.0e-61
Identities = 32/78 (41%), Positives = 43/78 (55%)
Query: 405 YQKVGVQWLWELHCQRA-----GGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSI---- 454
+Q+ GV++LWE R G I+ DEMGLGKT+Q ++ + L S KP I
Sbjct: 157 HQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPDCKPEIDKAV 216
Query: 455 VVCPVTLLRQWKREAEKW 472
VV P +L+R W E KW
Sbjct: 217 VVSPSSLVRNWYNEVGKW 234
Score = 41 (19.5 bits), Expect = 7.0e-53, Sum P(3) = 7.0e-53
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 503 DGEGSHDSDYE-GNLSSRNPKK 523
DG S D D++ G ++S+ PKK
Sbjct: 17 DGP-SDDEDWQPGAVTSKKPKK 37
>GENEDB_PFALCIPARUM|PF08_0048 [details] [associations]
symbol:PF08_0048 "ATP-dependent helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0016020 GO:GO:0006355 GO:GO:0003677 GO:GO:0006351
GO:GO:0016568 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529
PROSITE:PS51204 GO:GO:0008026 KO:K01509 EMBL:AL844507
RefSeq:XP_002808863.1 EnsemblProtists:PF08_0048:mRNA GeneID:2655499
KEGG:pfa:PF08_0048 EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 335 (123.0 bits), Expect = 3.3e-61, Sum P(4) = 3.3e-61
Identities = 66/147 (44%), Positives = 95/147 (64%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K+ + ++L K +G++ LLF Q +MLDILE FL Y + R+DG T V+QR +
Sbjct: 1767 SGKLCALEKLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKI 1826
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+ ++NN +FIFI +T+ G +G NLT AN VI +D DWNPS D QA +R RIGQ +DV
Sbjct: 1827 VTKFNNDKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDV 1886
Query: 865 TVYRLITRGTIEEKVYHRQIYKHFLTN 891
V+R + T+EE ++ +Q+ K L N
Sbjct: 1887 HVFRFVCEYTVEENIWKKQLQKRKLDN 1913
Score = 261 (96.9 bits), Expect = 3.3e-61, Sum P(4) = 3.3e-61
Identities = 62/184 (33%), Positives = 97/184 (52%)
Query: 558 WGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGV 617
W Y +LDE H I+N N + + L+ + +++TG P+QN L ELWSL F+ P
Sbjct: 784 WKYIILDEAHNIKNFNTKRWNIILSLKRDNCLLITGTPLQNSLEELWSLLHFLMPNIFTS 843
Query: 618 LPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTE 677
F+ F+ P+ + S + S L +I PY+LRR+K +V ++P K E
Sbjct: 844 HLDFKEWFSDPLNLA--IEKSKIHHSK--ELIDRLHTVIRPYILRRLKKNVEKEMPNKYE 899
Query: 678 HVLFCSLTEEQRAVYRAFLASSEVEQILD-GSRNSLYGIDV-MRKICNHPDLLEREQSCQ 735
H++ C LT Q+ +Y F+ + V+ L+ G+ L I + +RK+CNH DL + Q
Sbjct: 900 HIIKCKLTRRQQILYDEFINNKNVQNTLNTGNYIGLMNILIQLRKVCNHCDLFTNKY-IQ 958
Query: 736 IPDY 739
P Y
Sbjct: 959 TPYY 962
Score = 181 (68.8 bits), Expect = 3.3e-61, Sum P(4) = 3.3e-61
Identities = 44/138 (31%), Positives = 77/138 (55%)
Query: 393 KIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYK 451
KIP I L DYQ G+ WL L+ GI+ DEMGLGKT+Q +S L L ++ N++
Sbjct: 653 KIPPIIKATLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYLAYYFNIWG 712
Query: 452 PSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAK-SSDTDNDGEGSHDS 510
P +V+ P ++L W+ E +++ P F + L + Q+ ++K+ + D+ + S+ +
Sbjct: 713 PHLVIVPTSILINWEIELKRFCPCFKI-LSYYGNQNERYKKRVGWFNKDSFHICISSYST 771
Query: 511 DYEGNLSSRNPKKWDLLI 528
+ +L + K+W +I
Sbjct: 772 VVKDHLVFKR-KRWKYII 788
Score = 58 (25.5 bits), Expect = 3.3e-61, Sum P(4) = 3.3e-61
Identities = 28/104 (26%), Positives = 48/104 (46%)
Query: 93 KEDNDIDD--GDST--EQDGREDEKSAVQ-ASPNDMTLQHALTADRLKSLKKTKAQLVKE 147
++DN+ D+ GD+ E D D KS ND H +D+ + +TK ++K
Sbjct: 383 EDDNNNDEKGGDNNIDENDNNSDHKSEDNNIDENDNNSDHQ--SDQEQFNHETKDDIIKN 440
Query: 148 LSHFPKGITSKGIEHDKFIQDLV--KEEHRPKRKSKEAQKPGKD 189
S+ + I +K ++K +D KE + P R + +K D
Sbjct: 441 SSY--EHIDNKNY-YNKTGEDYKSDKENYSPTRFHNKLKKEKYD 481
Score = 50 (22.7 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 472 WY--PSFHVELLHDSA--QD-LGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDL 526
W+ SFH+ + S +D L F++KR K D +H N+ + N K+W++
Sbjct: 756 WFNKDSFHICISSYSTVVKDHLVFKRKRWKYIILDE----AH------NIKNFNTKRWNI 805
Query: 527 LINRVLRSESGLLIT 541
+++ L+ ++ LLIT
Sbjct: 806 ILS--LKRDNCLLIT 818
Score = 47 (21.6 bits), Expect = 4.7e-60, Sum P(4) = 4.7e-60
Identities = 20/103 (19%), Positives = 46/103 (44%)
Query: 94 EDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALT-ADRLKSLKKTKAQLVKELSHF- 151
EDN+ID+ D+ D + D++ + +D+ + D KT + ++
Sbjct: 409 EDNNIDENDNNS-DHQSDQEQFNHETKDDIIKNSSYEHIDNKNYYNKTGEDYKSDKENYS 467
Query: 152 PKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQ 194
P +K ++ +K+ +E+ K K ++ ++ K+ K +
Sbjct: 468 PTRFHNK-LKKEKY------DEYDTKLKIEKREEENKNYEKDE 503
Score = 45 (20.9 bits), Expect = 3.7e-25, Sum P(3) = 3.7e-25
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 463 RQWKREAEKWY--------PSFHVELLHDSAQDLG-FRKKRAKSSDTDNDGEGSHDSDYE 513
R+ KRE ++WY P E+ +++ D+ + K + D + + D D
Sbjct: 1590 RKCKRE-KRWYKKIKKTNNPPEDSEVYRENSSDVEKYNCDVEKDNCDDEEKDNCDDEDMN 1648
Query: 514 GNLSS 518
NLSS
Sbjct: 1649 SNLSS 1653
Score = 43 (20.2 bits), Expect = 1.4e-58, Sum P(5) = 1.4e-58
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 95 DNDIDDGDSTEQDGREDEKSAVQASPND 122
DN+ID+ D+ ED + ND
Sbjct: 362 DNNIDEDDNNNDHKSEDNSIGEDDNNND 389
Score = 43 (20.2 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 965 DKENNLEIGSSRRKGKEKVDNIGDEVDEETNI 996
D NN++ ++ +DN + +D NI
Sbjct: 1219 DNNNNID-NNNNIDNNNNIDNNNNNIDNNNNI 1249
Score = 42 (19.8 bits), Expect = 1.7e-58, Sum P(5) = 1.7e-58
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 96 NDID-DGDSTEQDGREDEKSAVQ 117
NDI+ D D T + + D +S+ Q
Sbjct: 527 NDIENDSDETSEHIKRDSRSSCQ 549
Score = 41 (19.5 bits), Expect = 2.0e-59, Sum P(4) = 2.0e-59
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 94 EDNDIDDGDSTEQDGREDEKSAVQASPND 122
+DN+ D+ D D +D + + +D
Sbjct: 609 DDNNDDNNDDNNDDNNDDNNNEHKNDSDD 637
Score = 41 (19.5 bits), Expect = 2.0e-59, Sum P(4) = 2.0e-59
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 86 HLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPND 122
+LRR + D +++E D D + ND
Sbjct: 565 NLRRTKIAKSKPSSDNNNSENDNNNDNNNDNNNDNND 601
Score = 41 (19.5 bits), Expect = 1.1e-46, Sum P(4) = 1.1e-46
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 491 RKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWD 525
R K AKS + ++ +D++ + N + N D
Sbjct: 568 RTKIAKSKPSSDNNNSENDNNNDNNNDNNNDNNDD 602
Score = 40 (19.1 bits), Expect = 2.5e-59, Sum P(4) = 2.5e-59
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 95 DNDIDDGDSTEQDGREDEKSAVQASPND 122
DN+ D+ D D +D ND
Sbjct: 598 DNNDDNNDDNNDDNNDDNNDDNNDDNND 625
Score = 40 (19.1 bits), Expect = 2.5e-59, Sum P(4) = 2.5e-59
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 95 DNDIDDGDSTEQDGREDEKSAVQASPND 122
DN+ D+ D D +D ND
Sbjct: 594 DNNNDNNDDNNDDNNDDNNDDNNDDNND 621
Score = 40 (19.1 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 27/120 (22%), Positives = 46/120 (38%)
Query: 694 AFLASSEVEQILDGSRNSLYGIDVMRKICNHPD--LLEREQSCQIPD-YGNPERSEKMKV 750
+F + +E + NS+Y + + I + D L E + I Y +P + K
Sbjct: 1360 SFFVNINIEDVHSYIYNSIYKEYIPKNILSFSDEFLTELNNNYDILSLYIDPYN--RYKS 1417
Query: 751 VAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN 810
+ L K++G Q + DI + Y + T +K R I +YNN
Sbjct: 1418 YNEYLYKMKEEG----TLTNQQSLGDINNKHI----YHKSTSNENTHMKNRKTFIYKYNN 1469
Score = 39 (18.8 bits), Expect = 3.2e-59, Sum P(4) = 3.2e-59
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 94 EDNDIDDGDSTEQDGRED 111
+DN+ D+ D D +D
Sbjct: 605 DDNNDDNNDDNNDDNNDD 622
Score = 39 (18.8 bits), Expect = 3.2e-59, Sum P(4) = 3.2e-59
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 94 EDNDIDDGDSTEQDGRED 111
+DN+ D+ D D +D
Sbjct: 601 DDNNDDNNDDNNDDNNDD 618
Score = 39 (18.8 bits), Expect = 3.6e-58, Sum P(5) = 3.6e-58
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 93 KEDNDIDD--GDST--EQDGREDEKS 114
++DN+ D+ GD++ E D D KS
Sbjct: 335 EDDNNNDEKSGDNSIGEDDNNNDHKS 360
Score = 39 (18.8 bits), Expect = 3.6e-58, Sum P(5) = 3.6e-58
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 95 DNDIDDGDSTEQDGREDEKSAVQASPND 122
DN+ID+ D+ + D + ND
Sbjct: 330 DNNIDEDDNNNDEKSGDNSIGEDDNNND 357
Score = 38 (18.4 bits), Expect = 4.0e-59, Sum P(4) = 4.0e-59
Identities = 24/108 (22%), Positives = 42/108 (38%)
Query: 95 DNDIDDGDSTEQDGREDEKSAVQ-ASPNDMTLQHALTADRL-KSLKKTKAQLVKE-LSHF 151
D+ +D E D DEK ND H + + ++ + Q +E +H
Sbjct: 373 DHKSEDNSIGEDDNNNDEKGGDNNIDENDNNSDHKSEDNNIDENDNNSDHQSDQEQFNHE 432
Query: 152 PKG--ITSKGIEH--DKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQK 195
K I + EH +K + E+++ KE P + +K +K
Sbjct: 433 TKDDIIKNSSYEHIDNKNYYNKTGEDYK---SDKENYSPTRFHNKLKK 477
Score = 38 (18.4 bits), Expect = 1.4e-58, Sum P(5) = 1.4e-58
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 169 LVKEEHRPKRKSKEAQKPGKDRSKQQ 194
++K+E+ +R KP D + +
Sbjct: 559 IIKDEYNLRRTKIAKSKPSSDNNNSE 584
Score = 38 (18.4 bits), Expect = 8.4e-45, Sum P(4) = 8.4e-45
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 496 KSSDT---DNDGEGSHDSDYE 513
KS D +ND H SD E
Sbjct: 407 KSEDNNIDENDNNSDHQSDQE 427
>UNIPROTKB|C0H4W3 [details] [associations]
symbol:PF08_0048 "Probable ATP-dependent helicase
PF08_0048" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005737 "cytoplasm" evidence=NAS] [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0016020
"membrane" evidence=NAS] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0016020
GO:GO:0006355 GO:GO:0003677 GO:GO:0006351 GO:GO:0016568
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
GO:GO:0008026 KO:K01509 EMBL:AL844507 RefSeq:XP_002808863.1
EnsemblProtists:PF08_0048:mRNA GeneID:2655499 KEGG:pfa:PF08_0048
EuPathDB:PlasmoDB:PF3D7_0820000 Uniprot:C0H4W3
Length = 2082
Score = 335 (123.0 bits), Expect = 3.3e-61, Sum P(4) = 3.3e-61
Identities = 66/147 (44%), Positives = 95/147 (64%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K+ + ++L K +G++ LLF Q +MLDILE FL Y + R+DG T V+QR +
Sbjct: 1767 SGKLCALEKLLSKCKREGNKCLLFTQFIKMLDILEIFLNHLNYSFIRLDGSTKVEQRQKI 1826
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+ ++NN +FIFI +T+ G +G NLT AN VI +D DWNPS D QA +R RIGQ +DV
Sbjct: 1827 VTKFNNDKSIFIFISSTRSGSIGINLTAANVVIFYDTDWNPSIDKQAMDRCHRIGQTKDV 1886
Query: 865 TVYRLITRGTIEEKVYHRQIYKHFLTN 891
V+R + T+EE ++ +Q+ K L N
Sbjct: 1887 HVFRFVCEYTVEENIWKKQLQKRKLDN 1913
Score = 261 (96.9 bits), Expect = 3.3e-61, Sum P(4) = 3.3e-61
Identities = 62/184 (33%), Positives = 97/184 (52%)
Query: 558 WGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGV 617
W Y +LDE H I+N N + + L+ + +++TG P+QN L ELWSL F+ P
Sbjct: 784 WKYIILDEAHNIKNFNTKRWNIILSLKRDNCLLITGTPLQNSLEELWSLLHFLMPNIFTS 843
Query: 618 LPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTE 677
F+ F+ P+ + S + S L +I PY+LRR+K +V ++P K E
Sbjct: 844 HLDFKEWFSDPLNLA--IEKSKIHHSK--ELIDRLHTVIRPYILRRLKKNVEKEMPNKYE 899
Query: 678 HVLFCSLTEEQRAVYRAFLASSEVEQILD-GSRNSLYGIDV-MRKICNHPDLLEREQSCQ 735
H++ C LT Q+ +Y F+ + V+ L+ G+ L I + +RK+CNH DL + Q
Sbjct: 900 HIIKCKLTRRQQILYDEFINNKNVQNTLNTGNYIGLMNILIQLRKVCNHCDLFTNKY-IQ 958
Query: 736 IPDY 739
P Y
Sbjct: 959 TPYY 962
Score = 181 (68.8 bits), Expect = 3.3e-61, Sum P(4) = 3.3e-61
Identities = 44/138 (31%), Positives = 77/138 (55%)
Query: 393 KIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYK 451
KIP I L DYQ G+ WL L+ GI+ DEMGLGKT+Q +S L L ++ N++
Sbjct: 653 KIPPIIKATLRDYQHAGLHWLLYLYKNNINGILADEMGLGKTLQCISLLSYLAYYFNIWG 712
Query: 452 PSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAK-SSDTDNDGEGSHDS 510
P +V+ P ++L W+ E +++ P F + L + Q+ ++K+ + D+ + S+ +
Sbjct: 713 PHLVIVPTSILINWEIELKRFCPCFKI-LSYYGNQNERYKKRVGWFNKDSFHICISSYST 771
Query: 511 DYEGNLSSRNPKKWDLLI 528
+ +L + K+W +I
Sbjct: 772 VVKDHLVFKR-KRWKYII 788
Score = 58 (25.5 bits), Expect = 3.3e-61, Sum P(4) = 3.3e-61
Identities = 28/104 (26%), Positives = 48/104 (46%)
Query: 93 KEDNDIDD--GDST--EQDGREDEKSAVQ-ASPNDMTLQHALTADRLKSLKKTKAQLVKE 147
++DN+ D+ GD+ E D D KS ND H +D+ + +TK ++K
Sbjct: 383 EDDNNNDEKGGDNNIDENDNNSDHKSEDNNIDENDNNSDHQ--SDQEQFNHETKDDIIKN 440
Query: 148 LSHFPKGITSKGIEHDKFIQDLV--KEEHRPKRKSKEAQKPGKD 189
S+ + I +K ++K +D KE + P R + +K D
Sbjct: 441 SSY--EHIDNKNY-YNKTGEDYKSDKENYSPTRFHNKLKKEKYD 481
Score = 50 (22.7 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 472 WY--PSFHVELLHDSA--QD-LGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDL 526
W+ SFH+ + S +D L F++KR K D +H N+ + N K+W++
Sbjct: 756 WFNKDSFHICISSYSTVVKDHLVFKRKRWKYIILDE----AH------NIKNFNTKRWNI 805
Query: 527 LINRVLRSESGLLIT 541
+++ L+ ++ LLIT
Sbjct: 806 ILS--LKRDNCLLIT 818
Score = 47 (21.6 bits), Expect = 4.7e-60, Sum P(4) = 4.7e-60
Identities = 20/103 (19%), Positives = 46/103 (44%)
Query: 94 EDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALT-ADRLKSLKKTKAQLVKELSHF- 151
EDN+ID+ D+ D + D++ + +D+ + D KT + ++
Sbjct: 409 EDNNIDENDNNS-DHQSDQEQFNHETKDDIIKNSSYEHIDNKNYYNKTGEDYKSDKENYS 467
Query: 152 PKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQ 194
P +K ++ +K+ +E+ K K ++ ++ K+ K +
Sbjct: 468 PTRFHNK-LKKEKY------DEYDTKLKIEKREEENKNYEKDE 503
Score = 45 (20.9 bits), Expect = 3.7e-25, Sum P(3) = 3.7e-25
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 463 RQWKREAEKWY--------PSFHVELLHDSAQDLG-FRKKRAKSSDTDNDGEGSHDSDYE 513
R+ KRE ++WY P E+ +++ D+ + K + D + + D D
Sbjct: 1590 RKCKRE-KRWYKKIKKTNNPPEDSEVYRENSSDVEKYNCDVEKDNCDDEEKDNCDDEDMN 1648
Query: 514 GNLSS 518
NLSS
Sbjct: 1649 SNLSS 1653
Score = 43 (20.2 bits), Expect = 1.4e-58, Sum P(5) = 1.4e-58
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 95 DNDIDDGDSTEQDGREDEKSAVQASPND 122
DN+ID+ D+ ED + ND
Sbjct: 362 DNNIDEDDNNNDHKSEDNSIGEDDNNND 389
Score = 43 (20.2 bits), Expect = 1.2e-30, Sum P(4) = 1.2e-30
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 965 DKENNLEIGSSRRKGKEKVDNIGDEVDEETNI 996
D NN++ ++ +DN + +D NI
Sbjct: 1219 DNNNNID-NNNNIDNNNNIDNNNNNIDNNNNI 1249
Score = 42 (19.8 bits), Expect = 1.7e-58, Sum P(5) = 1.7e-58
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 96 NDID-DGDSTEQDGREDEKSAVQ 117
NDI+ D D T + + D +S+ Q
Sbjct: 527 NDIENDSDETSEHIKRDSRSSCQ 549
Score = 41 (19.5 bits), Expect = 2.0e-59, Sum P(4) = 2.0e-59
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 94 EDNDIDDGDSTEQDGREDEKSAVQASPND 122
+DN+ D+ D D +D + + +D
Sbjct: 609 DDNNDDNNDDNNDDNNDDNNNEHKNDSDD 637
Score = 41 (19.5 bits), Expect = 2.0e-59, Sum P(4) = 2.0e-59
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 86 HLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPND 122
+LRR + D +++E D D + ND
Sbjct: 565 NLRRTKIAKSKPSSDNNNSENDNNNDNNNDNNNDNND 601
Score = 41 (19.5 bits), Expect = 1.1e-46, Sum P(4) = 1.1e-46
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 491 RKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWD 525
R K AKS + ++ +D++ + N + N D
Sbjct: 568 RTKIAKSKPSSDNNNSENDNNNDNNNDNNNDNNDD 602
Score = 40 (19.1 bits), Expect = 2.5e-59, Sum P(4) = 2.5e-59
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 95 DNDIDDGDSTEQDGREDEKSAVQASPND 122
DN+ D+ D D +D ND
Sbjct: 598 DNNDDNNDDNNDDNNDDNNDDNNDDNND 625
Score = 40 (19.1 bits), Expect = 2.5e-59, Sum P(4) = 2.5e-59
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 95 DNDIDDGDSTEQDGREDEKSAVQASPND 122
DN+ D+ D D +D ND
Sbjct: 594 DNNNDNNDDNNDDNNDDNNDDNNDDNND 621
Score = 40 (19.1 bits), Expect = 1.9e-08, Sum P(3) = 1.9e-08
Identities = 27/120 (22%), Positives = 46/120 (38%)
Query: 694 AFLASSEVEQILDGSRNSLYGIDVMRKICNHPD--LLEREQSCQIPD-YGNPERSEKMKV 750
+F + +E + NS+Y + + I + D L E + I Y +P + K
Sbjct: 1360 SFFVNINIEDVHSYIYNSIYKEYIPKNILSFSDEFLTELNNNYDILSLYIDPYN--RYKS 1417
Query: 751 VAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN 810
+ L K++G Q + DI + Y + T +K R I +YNN
Sbjct: 1418 YNEYLYKMKEEG----TLTNQQSLGDINNKHI----YHKSTSNENTHMKNRKTFIYKYNN 1469
Score = 39 (18.8 bits), Expect = 3.2e-59, Sum P(4) = 3.2e-59
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 94 EDNDIDDGDSTEQDGRED 111
+DN+ D+ D D +D
Sbjct: 605 DDNNDDNNDDNNDDNNDD 622
Score = 39 (18.8 bits), Expect = 3.2e-59, Sum P(4) = 3.2e-59
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 94 EDNDIDDGDSTEQDGRED 111
+DN+ D+ D D +D
Sbjct: 601 DDNNDDNNDDNNDDNNDD 618
Score = 39 (18.8 bits), Expect = 3.6e-58, Sum P(5) = 3.6e-58
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 93 KEDNDIDD--GDST--EQDGREDEKS 114
++DN+ D+ GD++ E D D KS
Sbjct: 335 EDDNNNDEKSGDNSIGEDDNNNDHKS 360
Score = 39 (18.8 bits), Expect = 3.6e-58, Sum P(5) = 3.6e-58
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 95 DNDIDDGDSTEQDGREDEKSAVQASPND 122
DN+ID+ D+ + D + ND
Sbjct: 330 DNNIDEDDNNNDEKSGDNSIGEDDNNND 357
Score = 38 (18.4 bits), Expect = 4.0e-59, Sum P(4) = 4.0e-59
Identities = 24/108 (22%), Positives = 42/108 (38%)
Query: 95 DNDIDDGDSTEQDGREDEKSAVQ-ASPNDMTLQHALTADRL-KSLKKTKAQLVKE-LSHF 151
D+ +D E D DEK ND H + + ++ + Q +E +H
Sbjct: 373 DHKSEDNSIGEDDNNNDEKGGDNNIDENDNNSDHKSEDNNIDENDNNSDHQSDQEQFNHE 432
Query: 152 PKG--ITSKGIEH--DKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQK 195
K I + EH +K + E+++ KE P + +K +K
Sbjct: 433 TKDDIIKNSSYEHIDNKNYYNKTGEDYK---SDKENYSPTRFHNKLKK 477
Score = 38 (18.4 bits), Expect = 1.4e-58, Sum P(5) = 1.4e-58
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 169 LVKEEHRPKRKSKEAQKPGKDRSKQQ 194
++K+E+ +R KP D + +
Sbjct: 559 IIKDEYNLRRTKIAKSKPSSDNNNSE 584
Score = 38 (18.4 bits), Expect = 8.4e-45, Sum P(4) = 8.4e-45
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 496 KSSDT---DNDGEGSHDSDYE 513
KS D +ND H SD E
Sbjct: 407 KSEDNNIDENDNNSDHQSDQE 427
>UNIPROTKB|K7GLQ2 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0031491
"nucleosome binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR009057
InterPro:IPR015194 InterPro:IPR015195 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 Pfam:PF13892
PROSITE:PS51194 SMART:SM00490 SMART:SM00717 Gene3D:1.10.10.60
SUPFAM:SSF46689 InterPro:IPR017884 PROSITE:PS51293
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 EMBL:CU695129
RefSeq:XP_003135410.1 Ensembl:ENSSSCT00000033549 GeneID:100188905
Uniprot:K7GLQ2
Length = 1073
Score = 548 (198.0 bits), Expect = 3.4e-61, Sum P(4) = 3.4e-61
Identities = 142/405 (35%), Positives = 225/405 (55%)
Query: 529 NRVLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV 586
+ ++ E + +T+YE + + EK + W Y V+DE HRI+N +++S + ++ ++
Sbjct: 279 DEMMPGEWDVCVTSYEMV--IKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKST 336
Query: 587 HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAY 646
+R+++TG P+QN L ELW+L +F+ P F++ F +G
Sbjct: 337 NRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQ--------KLVE 388
Query: 647 RCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD 706
R VL+ P+LLRR+K DV LP K E ++ L++ QR Y L +++ +
Sbjct: 389 RLHAVLK----PFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMK-DIDVLNS 443
Query: 707 -GSRNSLYGIDVM---RKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVW 758
G + + ++++ RK CNHP L + + P Y E S KM V+ ++L
Sbjct: 444 AGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG--PPYTTDEHIVSNSGKMVVLDKLLAKL 501
Query: 759 KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQR------MAL------ID 806
K+QG RVL+F+Q ++LDILE + + GYEY R+DG TP ++R + L I+
Sbjct: 502 KEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVELLGQREAIE 561
Query: 807 EYN--NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+N NSS FIF+L+T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQK+ V
Sbjct: 562 AFNVPNSSR-FIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPV 620
Query: 865 TVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMK 909
V+RLIT T+EE++ R K L + ++ QQ R ++ K
Sbjct: 621 RVFRLITDNTVEERIVERAEIKLRLDSIVI---QQGRLIDQQSNK 662
Score = 172 (65.6 bits), Expect = 3.4e-61, Sum P(4) = 3.4e-61
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL L+ GI+ DEMGLGKT+Q ++ LG L H+ N+ P +V+ P +
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 245
Query: 461 LLRQWKREAEKWYPSFHV 478
L W E ++W PS V
Sbjct: 246 TLHNWMNEFKRWVPSLRV 263
Score = 47 (21.6 bits), Expect = 4.6e-07, Sum P(4) = 4.6e-07
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QR ++ MKD+ LN G NI QL + N
Sbjct: 426 QREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCN 464
Score = 43 (20.2 bits), Expect = 3.4e-61, Sum P(4) = 3.4e-61
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVD 991
++ N I ++ + G++ +DNI EV+
Sbjct: 866 RDFNQFIKANEKYGRDDIDNIAREVE 891
Score = 37 (18.1 bits), Expect = 3.4e-61, Sum P(4) = 3.4e-61
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 280 AAQARPSTKLLDPESLPKL 298
AA+A S K +DPE K+
Sbjct: 72 AAKASKSEKEMDPEYEEKM 90
Score = 37 (18.1 bits), Expect = 1.3e-47, Sum P(3) = 1.3e-47
Identities = 9/39 (23%), Positives = 21/39 (53%)
Query: 492 KKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINR 530
K AK+S ++ + D +YE + + K+++ L+ +
Sbjct: 70 KLAAKASKSEKE----MDPEYEEKMKADRAKRFEFLLKQ 104
>UNIPROTKB|F1N166 [details] [associations]
symbol:SMARCA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0036310 "annealing helicase
activity" evidence=IEA] [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0016589 "NURF complex" evidence=IEA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IEA] [GO:0007420 "brain
development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:0031491 "nucleosome binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001005
InterPro:IPR001650 InterPro:IPR009057 InterPro:IPR015194
InterPro:IPR015195 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF09110 Pfam:PF09111 Pfam:PF13892 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 GO:GO:0005524 GO:GO:0045893
GO:GO:0007420 GO:GO:0030182 GO:GO:0003677 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0043044 GO:GO:0016589
GO:GO:0008094 GeneTree:ENSGT00680000100002 SUPFAM:SSF101224
OMA:PMSQKRK EMBL:DAAA02067438 EMBL:DAAA02067437 IPI:IPI01018574
Ensembl:ENSBTAT00000002973 Uniprot:F1N166
Length = 1078
Score = 543 (196.2 bits), Expect = 3.8e-61, Sum P(3) = 3.8e-61
Identities = 139/409 (33%), Positives = 222/409 (54%)
Query: 529 NRVLRSESGLLITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV 586
+ ++ E + +T+YE + + EK + W Y V+DE HRI+N +++S + + ++
Sbjct: 279 DEMMPGEWDVCVTSYEMV--IKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVRDFKST 336
Query: 587 HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAY 646
+R+++TG P+QN L ELW+L +F+ P F++ F +G
Sbjct: 337 NRLLLTGTPLQNNLHELWALLNFLLPDVFNSAEDFDSWFDTKNCLGDQ--------KLVE 388
Query: 647 RCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD 706
R VL+ P+LLRR+K DV LP K E ++ L++ QR Y L +++ +
Sbjct: 389 RLHTVLK----PFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMK-DIDVLNS 443
Query: 707 -GSRNSLYGIDVM---RKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVW 758
G + + ++++ RK CNHP L + + P Y E S KM V+ ++L
Sbjct: 444 AGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG--PPYTTDEHIVSNSGKMVVLDKLLAKL 501
Query: 759 KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALID-------EYNNS 811
K+QG RVL+F+Q ++LDILE + + GYEY R+DG TP ++R ++ EY S
Sbjct: 502 KEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREEILKDFKIIFHEYQGS 561
Query: 812 SDV-----------FIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQ 860
++ FIF+L+T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQ
Sbjct: 562 NEAIEAFNIPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQ 621
Query: 861 KQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMK 909
K+ V V+RLIT T+EE++ R K L + ++ QQ R ++ K
Sbjct: 622 KKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI---QQGRLIDQQSNK 667
Score = 172 (65.6 bits), Expect = 3.8e-61, Sum P(3) = 3.8e-61
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL L+ GI+ DEMGLGKT+Q ++ LG L H+ N+ P +V+ P +
Sbjct: 186 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 245
Query: 461 LLRQWKREAEKWYPSFHV 478
L W E ++W PS V
Sbjct: 246 TLHNWMNEFKRWVPSLRV 263
Score = 47 (21.6 bits), Expect = 1.1e-07, Sum P(3) = 1.1e-07
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
QR ++ MKD+ LN G NI QL + N
Sbjct: 426 QREWYTKILMKDIDVLNSAGKMDKMRLLNILMQLRKCCN 464
Score = 43 (20.2 bits), Expect = 3.8e-61, Sum P(3) = 3.8e-61
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVD 991
++ N I ++ + G++ +DNI EV+
Sbjct: 871 RDFNQFIKANEKYGRDDIDNIAREVE 896
>UNIPROTKB|F1PJC9 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG CTD:8438
EMBL:AAEX03009776 RefSeq:XP_532592.3 Ensembl:ENSCAFT00000006871
GeneID:475368 KEGG:cfa:475368 Uniprot:F1PJC9
Length = 747
Score = 371 (135.7 bits), Expect = 4.2e-61, Sum P(3) = 4.2e-61
Identities = 74/178 (41%), Positives = 113/178 (63%)
Query: 742 PERSEKMKVVAQVLKVWKDQGH-RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQ 800
P+ S KM V+ +L V + + +V+L + Q LD+ E A Y Y R+DG +K+
Sbjct: 492 PQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKK 551
Query: 801 RMALIDEYNNS-SDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIG 859
R +++ +NN S F+F+L++K GG G NL GANR+++FDPDWNP+ D QA R WR G
Sbjct: 552 RAKVVERFNNPLSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDG 611
Query: 860 QKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLND 916
QK+ +YRL++ GTIEEK++ RQ +K L++ ++ Q R F +K+LFTL++
Sbjct: 612 QKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELFTLDE 669
Score = 269 (99.8 bits), Expect = 4.2e-61, Sum P(3) = 4.2e-61
Identities = 72/220 (32%), Positives = 109/220 (49%)
Query: 513 EGNLSSRNPKKWDLLIN-RVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRN 571
+G +K + +N R +R S +LI +YE RL L G + DEGHR++N
Sbjct: 244 DGGSKDEIDQKLEGFMNQRGVRVPSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKN 303
Query: 572 PNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITV 631
+ L T R++++G PIQN L E +SL FV G LG F+ F +PI
Sbjct: 304 SENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILK 363
Query: 632 GGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAV 691
G A AS L ++ L+RR ++ LP K E V+ C LT Q +
Sbjct: 364 GRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTEL 423
Query: 692 YRAFLASSE-VEQILDGSR--NSLYGIDVMRKICNHPDLL 728
Y+ FL ++ E++ +G +SL I +++K+CNHP L+
Sbjct: 424 YKRFLKQAKPAEELREGKMTVSSLSSITLLKKLCNHPALI 463
Score = 119 (46.9 bits), Expect = 4.2e-61, Sum P(3) = 4.2e-61
Identities = 31/78 (39%), Positives = 43/78 (55%)
Query: 405 YQKVGVQWLWELHCQRA-----GGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSI---- 454
+Q+ GV++LWE R G I+ DEMGLGKT+Q ++ + L S KP I
Sbjct: 156 HQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLIWTLLRQSPECKPEIDKAV 215
Query: 455 VVCPVTLLRQWKREAEKW 472
VV P +L++ W E KW
Sbjct: 216 VVSPSSLVKNWYNEVGKW 233
>WB|WBGene00007053 [details] [associations]
symbol:chd-7 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0016817 "hydrolase activity, acting on acid
anhydrides" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001005 InterPro:IPR001650 InterPro:IPR006576
Pfam:PF00176 Pfam:PF00271 Pfam:PF07533 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00592
SMART:SM00717 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0003682 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR017877 PROSITE:PS50090
InterPro:IPR023780 KO:K14437 GeneTree:ENSGT00560000077077
EMBL:FO080504 EMBL:FO080107 RefSeq:NP_491426.2 PaxDb:O61845
EnsemblMetazoa:T04D1.4 GeneID:172079 KEGG:cel:CELE_T04D1.4
UCSC:T04D1.4 CTD:172079 WormBase:T04D1.4 HOGENOM:HOG000213105
InParanoid:O61845 OMA:LLAFRME NextBio:873933 Uniprot:O61845
Length = 2967
Score = 531 (192.0 bits), Expect = 4.7e-61, Sum P(4) = 4.7e-61
Identities = 143/423 (33%), Positives = 224/423 (52%)
Query: 539 LITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQL--QTVHRIIMTGAPI 596
LITT+E + E L + W V+DE HR++N N ++ LV L + HR+++TG P+
Sbjct: 1312 LITTFETVVSDVEFLKKIPWRVCVIDEAHRLKNRNCKL-LVNGLLAFRMEHRVLLTGTPL 1370
Query: 597 QNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLI 656
QN + EL+SL +F+ P + F +F G +Q L++++
Sbjct: 1371 QNNIDELFSLLNFLHPQQFDNSATFLEQF------GSCQTDDQVQK---------LQEIL 1415
Query: 657 MPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGID 716
P +LRR+K DV L K E ++ L++ Q+ YRA L + S SL +
Sbjct: 1416 KPMMLRRLKEDVEKSLGPKEETIIEVQLSDMQKKFYRAILERNFSHLCKGTSAPSLMNVM 1475
Query: 717 V-MRKICNHPDLLEREQSCQIPDY--GNPERSE-------------KMKVVAQVLKVWKD 760
+ +RK CNHP L+ + + D+ +P+ E K+ ++ ++L +
Sbjct: 1476 MELRKCCNHPFLINGAEEAIMNDFRLAHPDWDEETLAHKALIQASGKVVLIEKLLPKLRK 1535
Query: 761 QGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFIL 819
GH+VL+F+Q ++LD+LE FLI+ Y + R+DG R A ID ++ +SD F+F+L
Sbjct: 1536 DGHKVLIFSQMVKVLDLLEEFLISMSYPFERIDGNVRGDLRQAAIDRFSKENSDRFVFLL 1595
Query: 820 TTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKV 879
T+ GGLG NLT A+ VIIFD DWNP D+QA+ R RIGQK+ V VYRLIT T E ++
Sbjct: 1596 CTRAGGLGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQKKLVKVYRLITSNTYEREM 1655
Query: 880 YHRQIYKHFLTNKILKNPQQRRFF-KARNMKDLFTLNDDGNGGST-ETSNIFSQLSE-DV 936
+ + K L +L++ + A + KD+ L G GS + N S+ +E D+
Sbjct: 1656 FDKASLKLGLDKAVLQSTTALKAEGTALSKKDVEELLKKGAYGSIMDEENESSKFNEEDI 1715
Query: 937 NVV 939
+
Sbjct: 1716 ETI 1718
Score = 160 (61.4 bits), Expect = 4.7e-61, Sum P(4) = 4.7e-61
Identities = 32/86 (37%), Positives = 50/86 (58%)
Query: 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV 459
N+L +YQ GV WL + I+ DEMGLGKT+Q ++FL ++ ++ P +VV P+
Sbjct: 1195 NSLREYQFEGVDWLLYCYYNAQNCILADEMGLGKTVQTITFLSRIYDYGIHGPFLVVVPL 1254
Query: 460 TLLRQWKREAEKWYPSFHVELLHDSA 485
+ ++ W RE E W + + H SA
Sbjct: 1255 STIQNWVREFETW-TDMNAIVYHGSA 1279
Score = 75 (31.5 bits), Expect = 4.7e-61, Sum P(4) = 4.7e-61
Identities = 41/152 (26%), Positives = 61/152 (40%)
Query: 999 SLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRD-DISVPT 1057
S+ D S N + I + +A Q A+A S + D DI P
Sbjct: 1699 SIMDEENESSKFNEEDIETILQRRTQTITLEAGQKGSLFAKATFNSSHNKGDDIDIDDPE 1758
Query: 1058 -WTGKSGTAGAPSSVRKKFGSTVGSQLI--KPLEGSS---SNKTGEFNSFGAGASAGKVL 1111
WT A V K + G +LI +P + + NK E +S G+ S +
Sbjct: 1759 FWT--KWAEKAQVDVEKATATPDGRELIIEEPRKRTKRFEENKD-EGDSDGSEESGNRKR 1815
Query: 1112 SSSELLARIRGNQENAVGAGLERQFEVASSSA 1143
++E R RGN E+ +G R E+A+S A
Sbjct: 1816 GAAEKRKRRRGNDEDGDYSGSYRPDELATSKA 1847
Score = 65 (27.9 bits), Expect = 4.7e-61, Sum P(4) = 4.7e-61
Identities = 32/155 (20%), Positives = 60/155 (38%)
Query: 48 KPHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQD 107
+P ++ E +D SS + K +E V T V ++D++ S++ D
Sbjct: 801 EPVEEPEPMDDSSPVDQSTPVKADDIE-NFAGVEETFGEEEEVQDEDDDEASSAKSSKDD 859
Query: 108 GREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLV-----KELSHF-PKGITSKGIE 161
+E+E DM+ + T D L+ K+ S+ P + +K
Sbjct: 860 IKEEEDDDTSTITKDMSEAPSETNDGFTEPSTPATPLMGATSSKKKSYRRPAVVVAKS-R 918
Query: 162 HDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKT 196
K + D ++ P+R + +K G + K T
Sbjct: 919 KKKSVDDSDDDDFYPQR-GRGKKKGGGGKKKADPT 952
Score = 49 (22.3 bits), Expect = 2.2e-59, Sum P(4) = 2.2e-59
Identities = 22/103 (21%), Positives = 43/103 (41%)
Query: 102 DSTEQDGREDEKSAVQASPNDMTLQ------HALTADRLKSLKKTKAQLVKELSHFPKGI 155
D T++ G E KS + M + +A+ +++ +++ K + + +G
Sbjct: 950 DPTDEAGVEGAKSDDEDDEFLMKIDTPAPDPNAMVVEKILNMRMGKVEKKVPETEVAEGS 1009
Query: 156 TSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTVS 198
G E ++ VK+E PK + + G S + KT S
Sbjct: 1010 EENGEEKS---EEKVKKE--PKENGENGESVGNGESSKSKTES 1047
Score = 49 (22.3 bits), Expect = 2.9e-57, Sum P(5) = 2.9e-57
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 998 KSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRML 1047
+S A +A + A A +++ + +QA Q AQ+A A Q +L
Sbjct: 2487 ESTSSATAAAAAASAQAAALAAAQQQQQQAQQAQQAAQQAQSAKTQEELL 2536
Score = 46 (21.3 bits), Expect = 5.9e-57, Sum P(5) = 5.9e-57
Identities = 32/158 (20%), Positives = 64/158 (40%)
Query: 1021 EEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGSTVG 1080
+++ + ++QA+ VA ++ + + SR R +D + G S ++ S +
Sbjct: 2290 QQQQQQQQQAAAVAASSSASRKASRK-RPNNDNDAKMRAMQQMLMGQGGSGAAEYASMIA 2348
Query: 1081 SQLIKPLEGSSS--NKTGE----FNSFGAGASAGKVLSSSELL-ARIRG--NQENAVGAG 1131
L+ + +S N T N AG V + + +G + +++ A
Sbjct: 2349 LMLMPQMMAASGGQNMTAAQQQALNQMLTMLIAGAVQQQQQAQPSTSKGASSSQSSAQAN 2408
Query: 1132 LERQFEVASSS-ANVARFADTRTSRSSKNASDVQPEIL 1168
Q + A+ + A VA A TS + A Q ++L
Sbjct: 2409 QAAQAQAAAVALAQVAAAASASTSSADAQAVAQQQQVL 2446
Score = 45 (20.9 bits), Expect = 4.4e-07, Sum P(4) = 4.4e-07
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 491 RKKRAKSSDTDNDGEGSHDSD 511
++KR + +D D D GS+ D
Sbjct: 1820 KRKRRRGNDEDGDYSGSYRPD 1840
Score = 41 (19.5 bits), Expect = 1.5e-58, Sum P(4) = 1.5e-58
Identities = 14/63 (22%), Positives = 25/63 (39%)
Query: 245 QPGPSNKQNVPDEQEARSNDPFSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRP 304
Q PS Q P++Q+ + + V A M E +Q+ + +P P+
Sbjct: 555 QQHPSQHQTQPNQQQQQHPSGYGIGVSTAPASM-EPSQSVDQSAPPSQAQIPATSTPSTS 613
Query: 305 FQR 307
Q+
Sbjct: 614 SQQ 616
Score = 38 (18.4 bits), Expect = 2.1e-06, Sum P(4) = 2.1e-06
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 491 RKKRAKSSDTDNDGEGSHDS 510
R KR + + + D +GS +S
Sbjct: 1791 RTKRFEENKDEGDSDGSEES 1810
Score = 37 (18.1 bits), Expect = 2.9e-57, Sum P(5) = 2.9e-57
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 958 NADDAVGDKENNLEIGSSRRKGKEK 982
N D+ GD + + E G+ +R EK
Sbjct: 1798 NKDE--GDSDGSEESGNRKRGAAEK 1820
>RGD|1310969 [details] [associations]
symbol:Ino80 "INO80 homolog (S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0000070 "mitotic sister chromatid
segregation" evidence=ISO] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA;ISO] [GO:0003678 "DNA helicase activity"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0006200 "ATP catabolic process" evidence=ISO]
[GO:0006302 "double-strand break repair" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0010571 "positive
regulation of DNA replication involved in S phase" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0030307 "positive
regulation of cell growth" evidence=ISO] [GO:0031011 "Ino80
complex" evidence=ISO] [GO:0032508 "DNA duplex unwinding"
evidence=ISO] [GO:0034644 "cellular response to UV" evidence=ISO]
[GO:0043014 "alpha-tubulin binding" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0051225 "spindle assembly"
evidence=ISO] [GO:0070914 "UV-damage excision repair" evidence=ISO]
[GO:0071479 "cellular response to ionizing radiation" evidence=ISO]
[GO:2000045 "regulation of G1/S transition of mitotic cell cycle"
evidence=ISO] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 RGD:1310969
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GeneTree:ENSGT00680000100052
IPI:IPI00569811 Ensembl:ENSRNOT00000031672 UCSC:RGD:1310969
Uniprot:D4A6Q6
Length = 1553
Score = 347 (127.2 bits), Expect = 4.7e-61, Sum P(5) = 4.7e-61
Identities = 61/138 (44%), Positives = 97/138 (70%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K+ + +L K QGHRVL+++Q +M+D+LE +++ + Y R+DG + + +R +
Sbjct: 1097 SGKLYALDILLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDM 1156
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+ ++ +D+F+F+L+T+ GGLG NLT A+ VI +D DWNP+ D QA +RA R+GQ + V
Sbjct: 1157 VADFQTRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQV 1216
Query: 865 TVYRLITRGTIEEKVYHR 882
TVYRLI +GTIEE++ R
Sbjct: 1217 TVYRLICKGTIEERILQR 1234
Score = 258 (95.9 bits), Expect = 4.7e-61, Sum P(5) = 4.7e-61
Identities = 73/234 (31%), Positives = 117/234 (50%)
Query: 512 YEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLD-VEWGYAVLDEGHRIR 570
Y GN R KK L + + ++IT+Y QL + K V+W Y VLDE ++
Sbjct: 600 YWGNPHDRKKKK--TLYTQ--DAPFHVVITSY-QLVVQDVKYFQRVKWQYMVLDEAQALK 654
Query: 571 NPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIT 630
+ ++ + Q Q +R+++TG PIQN ++ELW+L F+ P F F+ I
Sbjct: 655 SSSSVRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIE 714
Query: 631 VGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRA 690
N S + + R ++L+ P++LRR+K DV +L K E +++C LT Q+
Sbjct: 715 SHA-ENKSAIDENQLSRLHMILK----PFMLRRIKKDVENELSDKIEILMYCQLTSRQKL 769
Query: 691 VYRAFLASSEVEQILDGSRNSLYGID---------VM--RKICNHPDLLEREQS 733
+Y+A +E +L S S VM RK+CNHP+L ER+++
Sbjct: 770 LYQALKNKISIEDLLQSSMGSTQQAQNTTSSLMNLVMQFRKVCNHPELFERQET 823
Score = 166 (63.5 bits), Expect = 4.7e-61, Sum P(5) = 4.7e-61
Identities = 36/95 (37%), Positives = 55/95 (57%)
Query: 387 TLEGGLKIPE-SIFNN-LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL 444
++ G IP+ +IFN L YQ G+ WL L+ Q GI+ DEMGLGKT+Q ++ L L
Sbjct: 503 SIRAGEDIPQPTIFNGKLKGYQLKGMNWLANLYEQGINGILADEMGLGKTVQSIALLAHL 562
Query: 445 -HFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHV 478
N++ P +++ P + L W +E ++ P F V
Sbjct: 563 AERENIWGPFLIISPASTLNNWHQEFTRFVPKFKV 597
Score = 57 (25.1 bits), Expect = 4.7e-61, Sum P(5) = 4.7e-61
Identities = 24/111 (21%), Positives = 50/111 (45%)
Query: 87 LRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVK 146
L+ + +++ D S + D E+E S + ++M H +L K +K + ++
Sbjct: 126 LKSILLSDESSEADSQSEDNDDEEEELSLSREELHNMLRLHKYK--KLHQNKYSKDKELQ 183
Query: 147 ELSHFPKGITSKGIEHDKFIQDLVKEEHR--PKRKSKEAQKPGKDRSKQQK 195
+ ++ G+ S D F + ++ H PK+K + K K + K+ K
Sbjct: 184 QYQYYSAGLLSTC---DPFYE---QQRHLLGPKKKKFKEDKKLKAKLKKVK 228
Score = 45 (20.9 bits), Expect = 4.7e-61, Sum P(5) = 4.7e-61
Identities = 25/92 (27%), Positives = 34/92 (36%)
Query: 1065 AGAPSSVRKKFGSTVGS-QLIKPL-EGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRG 1122
AG S R + G GS K +G S T + AGA AG +S+ A
Sbjct: 1419 AGRGHSARSR-GRPKGSGSTAKGAGKGRSRKSTAGSAAAMAGAKAGAAAASAAAYAAYGY 1477
Query: 1123 NQENAVGAGLERQFEVASSSANVARFADTRTS 1154
N + A Q + A +A F + S
Sbjct: 1478 NVSKGISASSPLQTSIVRP-AGLADFGPSSAS 1508
Score = 42 (19.8 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 19/83 (22%), Positives = 41/83 (49%)
Query: 671 QLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQ-ILDGSR---NSLYGIDVMRKICNHPD 726
Q + T + L C T E+R + RA SE+++ ++ G ++L +V+ + + +
Sbjct: 1212 QTKQVTVYRLICKGTIEERILQRA-KEKSEIQRMVISGGNFKPDTLKPKEVVSLLLDDEE 1270
Query: 727 LLEREQSCQIPDYGNPERSEKMK 749
L E++ + + E S ++K
Sbjct: 1271 L-EKKLRLRQEEKRQQEESNRVK 1292
Score = 39 (18.8 bits), Expect = 3.4e-59, Sum P(5) = 3.4e-59
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 349 DTRLEENEDSRDSLDMS 365
D++ E+N+D + L +S
Sbjct: 139 DSQSEDNDDEEEELSLS 155
Score = 39 (18.8 bits), Expect = 3.4e-59, Sum P(5) = 3.4e-59
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 51 DKSESIDPSSTSQEKLYNKLRAVEFE 76
D + + S S+E+L+N LR +++
Sbjct: 144 DNDDEEEELSLSREELHNMLRLHKYK 169
Score = 37 (18.1 bits), Expect = 5.5e-59, Sum P(5) = 5.5e-59
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 218 ETKRDELVRKGILTPFHKLKGFERCIQQPGPSNKQNVPDEQEARSND 264
E+K D KG L F KLK + ++ S++ + D Q ++D
Sbjct: 105 ESKSD----KGNLYNFSKLKKSRKWLKSILLSDESSEADSQSEDNDD 147
>UNIPROTKB|E2RKP4 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0071778 "WINAC complex" evidence=IEA]
[GO:0071565 "nBAF complex" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0030308 "negative regulation of cell growth"
evidence=IEA] [GO:0016514 "SWI/SNF complex" evidence=IEA]
[GO:0008285 "negative regulation of cell proliferation"
evidence=IEA] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0045892 GO:GO:0008285
GO:GO:0030308 GO:GO:0045944 GO:GO:0044212 GO:GO:0045111
GO:GO:0000790 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0071778 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0035887
EMBL:AAEX03000600 Ensembl:ENSCAFT00000003206 NextBio:20852013
Uniprot:E2RKP4
Length = 1556
Score = 336 (123.3 bits), Expect = 5.7e-61, Sum P(5) = 5.7e-61
Identities = 75/200 (37%), Positives = 116/200 (58%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQS-CQIPDYGNP--------ERSEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S + Y N S K +++ ++L
Sbjct: 985 GAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILP 1044
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+ HRVLLF Q ++ I+E + + Y R+DG T + R AL+ ++N S F
Sbjct: 1045 KLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYF 1104
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ V+IFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 1105 IFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1164
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 1165 EEKILAAAKYKLNVDQKVIQ 1184
Score = 285 (105.4 bits), Expect = 5.7e-61, Sum P(5) = 5.7e-61
Identities = 72/213 (33%), Positives = 112/213 (52%)
Query: 532 LRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRI 589
LRS + +L+TTYE + L + W Y ++DEGHR++N + +++ V RI
Sbjct: 802 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRI 861
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QNKL ELW+L +F+ P FE F P + G L
Sbjct: 862 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--ERVDLNEEETILII 919
Query: 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------SEVE 702
L ++ P+LLRR+K +V +QLP+K E+V+ C ++ Q+ +YR A SE +
Sbjct: 920 RRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKD 979
Query: 703 QILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
+ G +L I +RKICNHP + + E+S
Sbjct: 980 KKGKGGAKTLMNTIMQLRKICNHPYMFQHIEES 1012
Score = 147 (56.8 bits), Expect = 5.7e-61, Sum P(5) = 5.7e-61
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 398 IFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVV 456
I L YQ G++W+ L+ GI+ DEMGLGKTIQ ++ + L + P +++
Sbjct: 704 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 763
Query: 457 CPVTLLRQWKREAEKWYPS 475
P++ L W E +KW PS
Sbjct: 764 VPLSTLSNWTYEFDKWAPS 782
Score = 56 (24.8 bits), Expect = 5.7e-61, Sum P(5) = 5.7e-61
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 88 RRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPN 121
R S + D+D ++ D E+ R+D + + PN
Sbjct: 616 RSDSEESDSDYEEEDEEEESSRQDTEEKILLDPN 649
Score = 50 (22.7 bits), Expect = 1.2e-59, Sum P(6) = 1.2e-59
Identities = 28/123 (22%), Positives = 50/123 (40%)
Query: 49 PHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDG 108
P K + +DP QE+ Y +L+A +A + L + D+ + E
Sbjct: 314 PIQKPQGLDPVEILQEREY-RLQA------RIAHRIQELENLPGSLPPDLRTKATVELKA 366
Query: 109 -------REDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIE 161
R+ + V D TL+ AL + K+ K++K Q ++E K + IE
Sbjct: 367 LRLLNFQRQLRQEVVACMRRDTTLETALNS---KAYKRSKRQTLREARMTEKLEKQQKIE 423
Query: 162 HDK 164
++
Sbjct: 424 QER 426
Score = 49 (22.3 bits), Expect = 5.7e-61, Sum P(5) = 5.7e-61
Identities = 13/66 (19%), Positives = 36/66 (54%)
Query: 987 GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRM 1046
G ++ E++ +L+S+F + A ++ +++EE EE+ + ++ A++++
Sbjct: 1451 GSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEE----EEEDEEESESEAKSVKVKIK 1506
Query: 1047 LRSRDD 1052
L +D+
Sbjct: 1507 LNKKDE 1512
Score = 44 (20.5 bits), Expect = 1.0e-59, Sum P(5) = 1.0e-59
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 90 VSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTL 125
V+ + D++ D D E+D E+E+S+ Q + + L
Sbjct: 613 VAPRSDSEESDSDYEEED--EEEESSRQDTEEKILL 646
Score = 43 (20.2 bits), Expect = 1.3e-59, Sum P(5) = 1.3e-59
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 133 RLKSLKKTK--AQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQK 185
+L KK + A L+++ + +T+ EH + KE+ + +R+ K+A++
Sbjct: 500 KLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQ--AQAAKEKKKRRRRKKKAEE 552
Score = 37 (18.1 bits), Expect = 1.2e-59, Sum P(6) = 1.2e-59
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 163 DKFIQDLVKE--EHRPKRKSKEAQKPGKDRSKQQK 195
D+++ +L EH+ + +KE +K + + K ++
Sbjct: 518 DEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEE 552
>WB|WBGene00010369 [details] [associations]
symbol:chd-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0009792 GO:GO:0003677
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 OMA:VERVIKW EMBL:Z92970 PIR:T23056
RefSeq:NP_491994.2 ProteinModelPortal:O17909 SMR:O17909
STRING:O17909 PaxDb:O17909 EnsemblMetazoa:H06O01.2 GeneID:172432
KEGG:cel:CELE_H06O01.2 UCSC:H06O01.2 CTD:172432 WormBase:H06O01.2
InParanoid:O17909 NextBio:875487 Uniprot:O17909
Length = 1461
Score = 549 (198.3 bits), Expect = 6.0e-61, Sum P(3) = 6.0e-61
Identities = 133/396 (33%), Positives = 214/396 (54%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHR 568
Y G++ SR+ ++++ + + + ++TTYE L L +K L ++W ++DE HR
Sbjct: 485 YMGDVVSRDMIRQYEWFVGGTKKMKINAILTTYEIL--LKDKAFLSSIDWAALLVDEAHR 542
Query: 569 IRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP 628
++N + + Q + H++++TG P+QN L ELW+L F+ P K FE
Sbjct: 543 LKNDESLLYKSLTQFRFNHKLLITGTPLQNSLKELWALLHFIMPEKFDCWEEFE------ 596
Query: 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQ 688
T +N + L + P+LLRR+K DV LP KTE +L +T Q
Sbjct: 597 -TAHNESNHKGISA---------LHKKLEPFLLRRVKKDVEKSLPPKTEQILRVDMTAHQ 646
Query: 689 RAVYRAFLASS--EVEQILDGSRNSLYGIDV-MRKICNHPDLLEREQSCQIPDYGNPER- 744
+ Y+ L + E+ + + GS N + + ++K CNH L + G ++
Sbjct: 647 KQFYKWILTKNYRELSKGVKGSINGFVNLVMELKKCCNHASLTRQYDHIYDDAQGRLQQL 706
Query: 745 ---SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQR 801
S K+ ++ ++L KD+GHRVL+F+Q MLDIL+ +L + +R+DG R
Sbjct: 707 LKSSGKLILLDKLLCRLKDKGHRVLIFSQMVMMLDILQEYLQLRRFPSQRLDGSMRADLR 766
Query: 802 MALIDEYN--NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIG 859
+D YN S+D F F+L+T+ GGLG NL A+ VIIFD DWNP D+QA RA RIG
Sbjct: 767 KQALDHYNAPGSTD-FAFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIG 825
Query: 860 QKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
Q + V +YRL+T+G++EE++ R K L + +++
Sbjct: 826 QTKTVNIYRLVTKGSVEEEIVERAKRKLVLDHLVIQ 861
Score = 157 (60.3 bits), Expect = 6.0e-61, Sum P(3) = 6.0e-61
Identities = 33/95 (34%), Positives = 53/95 (55%)
Query: 385 FVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL 444
F ++ LK + L DYQ G+ W+ C+ I+ DEMGLGKTIQ +S L +L
Sbjct: 388 FESMPDFLKTDGESTHKLRDYQLEGLNWMVYAWCKGNSSILADEMGLGKTIQSISLLASL 447
Query: 445 -HFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHV 478
H ++ P +VV P++ + W++E +W P ++
Sbjct: 448 FHRYDLAGPYLVVVPLSTMAAWQKEFAQWAPEMNL 482
Score = 59 (25.8 bits), Expect = 6.0e-61, Sum P(3) = 6.0e-61
Identities = 26/115 (22%), Positives = 53/115 (46%)
Query: 93 KEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFP 152
+E+N +G+ST +D E EK+A + + A S + K+ ++
Sbjct: 25 EEENP--EGNSTSEDNDEKEKAADSPESSSDQSDDSDDASENSSSSEPDEPAPKKKNNNN 82
Query: 153 KGI---TSKGIEHDKFIQDLVKEEHR---PKRKSKEAQKPGKD---RSKQQKTVS 198
+G+ T K +E++ + + + + + P S+E+Q D R K ++TV+
Sbjct: 83 RGMDAETRKLLENENYFRRSKRSKRQDDSPSDNSEESQSSEDDWDDRRKPRRTVT 137
Score = 52 (23.4 bits), Expect = 5.7e-50, Sum P(3) = 5.7e-50
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 462 LRQWKREAEKWYPSFHVELLHDSAQDL--GFRK-KRAKSSDTDND--GEGSHDSDY 512
+ WKR A+K Y F E A++L ++K +R + T D +GS ++Y
Sbjct: 280 VEMWKRSADKEYIEFF-ECEQQMAEELCEEYKKVERVVAHQTSRDRAADGSMATEY 334
Score = 47 (21.6 bits), Expect = 1.1e-59, Sum P(3) = 1.1e-59
Identities = 27/118 (22%), Positives = 46/118 (38%)
Query: 78 GAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSL 137
GA S + ND GD TEQ + + N +++L K L
Sbjct: 209 GATGSATTCYNIADKGDPNDQIPGDKTEQQFFV-KWTGWSHLHNTWESENSLALMNAKGL 267
Query: 138 KKTK--AQLVKELSHFPKGITSKGIEHDKFIQDLVKE--EHRPKRKSKEAQKPGKDRS 191
KK + + KE+ + + + IE + Q + +E E K + A + +DR+
Sbjct: 268 KKVQNYVKKQKEVEMWKRSADKEYIEFFECEQQMAEELCEEYKKVERVVAHQTSRDRA 325
Score = 41 (19.5 bits), Expect = 4.6e-59, Sum P(3) = 4.6e-59
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 95 DNDIDDGDSTEQDGREDEKSAVQA 118
D+DIDD D E D E+ AV A
Sbjct: 168 DDDIDDDDVLEWD----EEPAVPA 187
Score = 40 (19.1 bits), Expect = 5.9e-59, Sum P(3) = 5.9e-59
Identities = 22/110 (20%), Positives = 40/110 (36%)
Query: 91 STKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSH 150
S+ + +D DD DE + + + N+ + A+ K L+ + S
Sbjct: 51 SSDQSDDSDDASENSSSSEPDEPAPKKKNNNN----RGMDAETRKLLENENYFRRSKRSK 106
Query: 151 FPKGITSKGIEHDKFIQDLVKEEHRPKRK-SKEAQKPGKDRSKQQKTVSV 199
S E + +D + +P+R +K+ K K K SV
Sbjct: 107 RQDDSPSDNSEESQSSEDDWDDRRKPRRTVTKKVVKQTKKAVSVVKRKSV 156
Score = 40 (19.1 bits), Expect = 1.4e-47, Sum P(2) = 1.4e-47
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 491 RKKRAKSSDTDNDGEG-SHDSDYEGNLSSRNPKK 523
R KR S +DN E S + D++ R P++
Sbjct: 104 RSKRQDDSPSDNSEESQSSEDDWDDR---RKPRR 134
Score = 39 (18.8 bits), Expect = 1.3e-48, Sum P(3) = 1.3e-48
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 496 KSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGL 538
K+SD D D + + D E + + P + RV++ G+
Sbjct: 165 KNSDDDIDDDDVLEWDEEPAVPAEGPAILTETVERVIKWRHGV 207
>UNIPROTKB|J9P5P2 [details] [associations]
symbol:SMARCA2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 OMA:PQEGMHQ EMBL:AAEX03000600 RefSeq:XP_850159.1
Ensembl:ENSCAFT00000046362 GeneID:476335 KEGG:cfa:476335
Uniprot:J9P5P2
Length = 1574
Score = 336 (123.3 bits), Expect = 6.2e-61, Sum P(5) = 6.2e-61
Identities = 75/200 (37%), Positives = 116/200 (58%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQS-CQIPDYGNP--------ERSEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S + Y N S K +++ ++L
Sbjct: 985 GAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILP 1044
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+ HRVLLF Q ++ I+E + + Y R+DG T + R AL+ ++N S F
Sbjct: 1045 KLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYF 1104
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ V+IFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 1105 IFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1164
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 1165 EEKILAAAKYKLNVDQKVIQ 1184
Score = 285 (105.4 bits), Expect = 6.2e-61, Sum P(5) = 6.2e-61
Identities = 72/213 (33%), Positives = 112/213 (52%)
Query: 532 LRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRI 589
LRS + +L+TTYE + L + W Y ++DEGHR++N + +++ V RI
Sbjct: 802 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRI 861
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QNKL ELW+L +F+ P FE F P + G L
Sbjct: 862 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--ERVDLNEEETILII 919
Query: 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------SEVE 702
L ++ P+LLRR+K +V +QLP+K E+V+ C ++ Q+ +YR A SE +
Sbjct: 920 RRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKD 979
Query: 703 QILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
+ G +L I +RKICNHP + + E+S
Sbjct: 980 KKGKGGAKTLMNTIMQLRKICNHPYMFQHIEES 1012
Score = 147 (56.8 bits), Expect = 6.2e-61, Sum P(5) = 6.2e-61
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 398 IFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVV 456
I L YQ G++W+ L+ GI+ DEMGLGKTIQ ++ + L + P +++
Sbjct: 704 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 763
Query: 457 CPVTLLRQWKREAEKWYPS 475
P++ L W E +KW PS
Sbjct: 764 VPLSTLSNWTYEFDKWAPS 782
Score = 56 (24.8 bits), Expect = 6.2e-61, Sum P(5) = 6.2e-61
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 88 RRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPN 121
R S + D+D ++ D E+ R+D + + PN
Sbjct: 616 RSDSEESDSDYEEEDEEEESSRQDTEEKILLDPN 649
Score = 50 (22.7 bits), Expect = 1.3e-59, Sum P(6) = 1.3e-59
Identities = 28/123 (22%), Positives = 50/123 (40%)
Query: 49 PHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDG 108
P K + +DP QE+ Y +L+A +A + L + D+ + E
Sbjct: 314 PIQKPQGLDPVEILQEREY-RLQA------RIAHRIQELENLPGSLPPDLRTKATVELKA 366
Query: 109 -------REDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIE 161
R+ + V D TL+ AL + K+ K++K Q ++E K + IE
Sbjct: 367 LRLLNFQRQLRQEVVACMRRDTTLETALNS---KAYKRSKRQTLREARMTEKLEKQQKIE 423
Query: 162 HDK 164
++
Sbjct: 424 QER 426
Score = 49 (22.3 bits), Expect = 6.2e-61, Sum P(5) = 6.2e-61
Identities = 13/66 (19%), Positives = 36/66 (54%)
Query: 987 GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRM 1046
G ++ E++ +L+S+F + A ++ +++EE EE+ + ++ A++++
Sbjct: 1469 GSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEE----EEEDEEESESEAKSVKVKIK 1524
Query: 1047 LRSRDD 1052
L +D+
Sbjct: 1525 LNKKDE 1530
Score = 44 (20.5 bits), Expect = 1.1e-59, Sum P(5) = 1.1e-59
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 90 VSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTL 125
V+ + D++ D D E+D E+E+S+ Q + + L
Sbjct: 613 VAPRSDSEESDSDYEEED--EEEESSRQDTEEKILL 646
Score = 43 (20.2 bits), Expect = 1.4e-59, Sum P(5) = 1.4e-59
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 133 RLKSLKKTK--AQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQK 185
+L KK + A L+++ + +T+ EH + KE+ + +R+ K+A++
Sbjct: 500 KLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQ--AQAAKEKKKRRRRKKKAEE 552
Score = 37 (18.1 bits), Expect = 1.3e-59, Sum P(6) = 1.3e-59
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 163 DKFIQDLVKE--EHRPKRKSKEAQKPGKDRSKQQK 195
D+++ +L EH+ + +KE +K + + K ++
Sbjct: 518 DEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEE 552
>UNIPROTKB|Q92698 [details] [associations]
symbol:RAD54L "DNA repair and recombination protein
RAD54-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IEA]
[GO:0010212 "response to ionizing radiation" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0051276
"chromosome organization" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0036310 "annealing helicase activity"
evidence=IDA] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006310
"DNA recombination" evidence=TAS] [GO:0007126 "meiosis"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000733 "DNA strand renaturation" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0007126
GO:GO:0042493 GO:GO:0003677 GO:GO:0006281 GO:GO:0010212
GO:GO:0006310 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CleanEx:HS_RAD54L GO:GO:0036310 EMBL:AL121602 HOGENOM:HOG000204521
HOVERGEN:HBG058654 OrthoDB:EOG4D7Z53 KO:K10875 OMA:TYQALMG
EMBL:X97795 EMBL:AY623117 EMBL:BC121059 EMBL:BC121060
IPI:IPI00294292 RefSeq:NP_001136020.1 RefSeq:NP_003570.2
UniGene:Hs.642042 ProteinModelPortal:Q92698 SMR:Q92698
DIP:DIP-48628N IntAct:Q92698 STRING:Q92698 PhosphoSite:Q92698
DMDM:51316508 PaxDb:Q92698 PRIDE:Q92698 Ensembl:ENST00000371975
Ensembl:ENST00000442598 GeneID:8438 KEGG:hsa:8438 UCSC:uc001cpl.2
CTD:8438 GeneCards:GC01P046713 HGNC:HGNC:9826 MIM:603615
neXtProt:NX_Q92698 PharmGKB:PA34181 InParanoid:Q92698
PhylomeDB:Q92698 ChiTaRS:RAD54L GenomeRNAi:8438 NextBio:31570
ArrayExpress:Q92698 Bgee:Q92698 Genevestigator:Q92698
GermOnline:ENSG00000085999 Uniprot:Q92698
Length = 747
Score = 365 (133.5 bits), Expect = 7.8e-61, Sum P(3) = 7.8e-61
Identities = 73/178 (41%), Positives = 113/178 (63%)
Query: 742 PERSEKMKVVAQVLKVWKDQGH-RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQ 800
P+ S KM V+ +L V + + +V+L + Q LD+ E A Y Y R+DG +K+
Sbjct: 492 PQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKK 551
Query: 801 RMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIG 859
R +++ +N+ SS F+F+L++K GG G NL GANR+++FDPDWNP+ D QA R WR G
Sbjct: 552 RAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDG 611
Query: 860 QKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLND 916
QK+ +YRL++ GTIEEK++ RQ +K L++ ++ Q R F +K+LF L++
Sbjct: 612 QKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELFILDE 669
Score = 273 (101.2 bits), Expect = 7.8e-61, Sum P(3) = 7.8e-61
Identities = 74/220 (33%), Positives = 109/220 (49%)
Query: 513 EGNLSSRNPKKWDLLIN-RVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRN 571
+G +K + +N R R S +LI +YE RL L G + DEGHR++N
Sbjct: 244 DGGSKDEIDQKLEGFMNQRGARVSSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKN 303
Query: 572 PNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITV 631
+ L T R++++G PIQN L E +SL FV G LG F+ F +PI
Sbjct: 304 SENQTYQALDSLNTSRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAHEFKKHFELPILK 363
Query: 632 GGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAV 691
G A AS L ++ L+RR ++ LP K E V+ C LT Q +
Sbjct: 364 GRDAAASEADRQLGEERLRELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTEL 423
Query: 692 YRAFLASSE-VEQILDG--SRNSLYGIDVMRKICNHPDLL 728
Y+ FL ++ E++L+G S +SL I ++K+CNHP L+
Sbjct: 424 YKRFLRQAKPAEELLEGKMSVSSLSSITSLKKLCNHPALI 463
Score = 119 (46.9 bits), Expect = 7.8e-61, Sum P(3) = 7.8e-61
Identities = 31/78 (39%), Positives = 43/78 (55%)
Query: 405 YQKVGVQWLWELHCQRA-----GGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSI---- 454
+Q+ GV++LWE R G I+ DEMGLGKT+Q ++ + L S KP I
Sbjct: 156 HQREGVKFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPECKPEIDKAV 215
Query: 455 VVCPVTLLRQWKREAEKW 472
VV P +L++ W E KW
Sbjct: 216 VVSPSSLVKNWYNEVGKW 233
>CGD|CAL0001390 [details] [associations]
symbol:orf19.3035 species:5476 "Candida albicans" [GO:0000124
"SAGA complex" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0030874 "nucleolar chromatin" evidence=IEA] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IEA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IEA] [GO:0071441 "negative regulation of histone H3-K14
acetylation" evidence=IEA] [GO:0006369 "termination of RNA
polymerase II transcription" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0006368 "transcription elongation
from RNA polymerase II promoter" evidence=IEA] [GO:0000070 "mitotic
sister chromatid segregation" evidence=IEA] [GO:0060303 "regulation
of nucleosome density" evidence=IEA] [GO:0006200 "ATP catabolic
process" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IEA] [GO:2000104 "negative regulation of
DNA-dependent DNA replication" evidence=IEA] [GO:0042766
"nucleosome mobilization" evidence=IEA] [GO:0001178 "regulation of
transcriptional start site selection at RNA polymerase II promoter"
evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0030466 "chromatin silencing at
silent mating-type cassette" evidence=IEA] [GO:0000182 "rDNA
binding" evidence=IEA] [GO:0031490 "chromatin DNA binding"
evidence=IEA] [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 CGD:CAL0001390
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:AACQ01000017
EMBL:AACQ01000015 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907 KO:K11367
RefSeq:XP_721262.1 RefSeq:XP_721533.1 ProteinModelPortal:Q5AI17
STRING:Q5AI17 GeneID:3636889 GeneID:3637077 KEGG:cal:CaO19.10553
KEGG:cal:CaO19.3035 Uniprot:Q5AI17
Length = 1410
Score = 567 (204.7 bits), Expect = 9.5e-61, Sum P(3) = 9.5e-61
Identities = 187/648 (28%), Positives = 306/648 (47%)
Query: 512 YEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRN 571
Y GN +R + L N+ + + +L+TTYE + +L +W + +DE HR++N
Sbjct: 442 YLGNGEARKTIREYELYNQNRKPKFNVLLTTYEYILKDKNELGAFKWQFLAVDEAHRLKN 501
Query: 572 PNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITV 631
+ + K + +R+++TG P+QN + EL +L +F+ PGK + E +F T+
Sbjct: 502 AESSLYEALKGFKVSNRLLITGTPLQNNVKELAALCNFLMPGKFTIDQ--EIDFE---TI 556
Query: 632 GGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAV 691
S + L+ I P++LRR+K DV LP K+E +L L++ Q
Sbjct: 557 D----------SEQEQYIKDLQKKISPFILRRLKKDVEKSLPSKSERILRVELSDIQTEY 606
Query: 692 YRAFLASSEVEQILD--GSRNSLYGI-DVMRKICNHPDLLEREQSCQIPDYGNPER---- 744
Y+ + + GS+ SL I ++K NHP L + + + G+P R
Sbjct: 607 YKNIITKNYAALNAGNRGSQISLLNIMSELKKASNHPYLFDGAEDKVLDKAGSPSRENTL 666
Query: 745 ------SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPV 798
S KM ++ Q+L + +GHRVL+F+Q +MLDIL ++ GY+++R+DG P
Sbjct: 667 KGIVMSSGKMVLLEQLLSRLRKEGHRVLIFSQMVRMLDILGDYMFIKGYQFQRLDGTVPS 726
Query: 799 KQRMALIDEYN--NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAW 856
+R ID +N S D F F+L+T+ GGLG NL A+ VIIFD DWNP D+QA RA
Sbjct: 727 SKRKIAIDHFNAPGSKD-FAFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMARAH 785
Query: 857 RIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK----NPQQRRFFKAR-NMKDL 911
RIGQK V+VYR +++ T+EE++ R K L I+ +P + K + +L
Sbjct: 786 RIGQKNHVSVYRFVSKDTVEEQILERARKKMVLEYAIISLGITDPSAKNGSKTEPSTNEL 845
Query: 912 FTLNDDGNGGSTETSNIFSQLSEDVNVVGXXXXXXXXXXXXXAASANADDAVGDKENNLE 971
+ G G + +N +L E++N+ +N +G +E +
Sbjct: 846 SQILKFGAGTMFKENNNQQKL-ENLNLDDVLSHAEDHVTTPELGESN----LGSEEFLKQ 900
Query: 972 IGSSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQAS 1031
+ K + D+I + EE LK + M + + +R E S
Sbjct: 901 FEVTDYKADVEWDDIIPQ--EELTKLKDEEKRKADEQYLQDQIAMYSRRKAAVRKFENGS 958
Query: 1032 QVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGSTVGS--QLIKPLEG 1089
V ++ SR LR R+ + + G S+ K +G G QL++ EG
Sbjct: 959 SVPSDVEDSGEDSRPLRRRN--AGDHQLSEKEIRGIYRSILK-WGDLSGKWEQLVE--EG 1013
Query: 1090 SSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQFE 1137
S +NK N + +++S+S+ L + + V A LER+ E
Sbjct: 1014 SITNK----NPVLVKHAYNEIISTSKQLVKEEEARRAVVLAELERKAE 1057
Score = 152 (58.6 bits), Expect = 9.5e-61, Sum P(3) = 9.5e-61
Identities = 33/84 (39%), Positives = 48/84 (57%)
Query: 393 KIPESIFNN-LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYK 451
K P I N L D+Q G+ W+ L + GI+ DEMGLGKT+Q ++FL L ++
Sbjct: 352 KQPVFIKNGELRDFQLTGLNWMAFLWSRNENGILADEMGLGKTVQTVAFLSWLIYARRQN 411
Query: 452 -PSIVVCPVTLLRQWKREAEKWYP 474
P +VV P++ + W+ EKW P
Sbjct: 412 GPHLVVVPLSTVPAWQETFEKWAP 435
Score = 46 (21.3 bits), Expect = 0.00017, Sum P(5) = 0.00017
Identities = 29/120 (24%), Positives = 46/120 (38%)
Query: 1009 AMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAP 1068
A DA N +E ++ + + +R R S + T G
Sbjct: 1179 AAGKDATANQDGKESVKKVPGSVHLGRRVDYLFTLLRDEESDSSVGGSTPVGSVRKRIRK 1238
Query: 1069 SS-VRKKFGSTVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENA 1127
S+ V GS+ GS L G+S+ T N+ G K+ SS +L + R NQ+ +
Sbjct: 1239 STPVPHNSGSSNGSH--NTLSGNSNGGTA--NNTGKHRKPVKLESSEKLAKQKRMNQQRS 1294
Score = 42 (19.8 bits), Expect = 9.5e-61, Sum P(3) = 9.5e-61
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 89 RVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADR-LKSLKKT 140
R K +D +DG S ++D DE +D+ + A + +KS KT
Sbjct: 44 RKKKKVQDDYEDGISMDED-ENDEFGDDDDDDDDIYYDGSFGAGKKMKSKPKT 95
Score = 42 (19.8 bits), Expect = 0.00017, Sum P(5) = 0.00017
Identities = 30/119 (25%), Positives = 55/119 (46%)
Query: 461 LLRQWKREAEKWYPSFHVELLHDSAQDLG---FRKKRAKSSDTDNDGE-GSHDS--DYEG 514
+LR+ K++ EK PS +L D+ ++ K+ N G GS S +
Sbjct: 575 ILRRLKKDVEKSLPSKSERILRVELSDIQTEYYKNIITKNYAALNAGNRGSQISLLNIMS 634
Query: 515 NL--SSRNPKKWDLLINRVL-RSESGLLITTYEQLRLLGEKLLDVEWGYAVL-DEGHRI 569
L +S +P +D ++VL ++ S T + + + K++ +E + L EGHR+
Sbjct: 635 ELKKASNHPYLFDGAEDKVLDKAGSPSRENTLKGIVMSSGKMVLLEQLLSRLRKEGHRV 693
Score = 40 (19.1 bits), Expect = 1.2e-49, Sum P(2) = 1.2e-49
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 483 DSAQDLGFRKKRAKSSDTDNDGEGSHDSD 511
DS +D+ +K+ K D DG S D D
Sbjct: 35 DSEEDVAPSRKKKKVQDDYEDGI-SMDED 62
Score = 38 (18.4 bits), Expect = 2.5e-60, Sum P(3) = 2.5e-60
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 88 RRVSTKEDNDIDDGDSTEQDGREDEK 113
++V+ D D DD D E + DE+
Sbjct: 127 KQVNYAIDYDEDDADLLESEPEFDEE 152
Score = 38 (18.4 bits), Expect = 2.5e-60, Sum P(3) = 2.5e-60
Identities = 14/53 (26%), Positives = 24/53 (45%)
Query: 57 DPSSTSQEKLYNKLRAVEFEIGAVASTVD---HLRRVSTKEDNDIDDGDSTEQ 106
DP +T ++ L A++ E D H+ R+ E + DDG++ Q
Sbjct: 244 DPLTTKED-----LEAMDIERERKRDEQDEYTHVERIVDSERVETDDGETKLQ 291
Score = 38 (18.4 bits), Expect = 2.5e-60, Sum P(3) = 2.5e-60
Identities = 17/79 (21%), Positives = 33/79 (41%)
Query: 96 NDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKK-TKAQLVKELSHFPKG 154
+D DD D DG +++ P Q K+ + + Q ++ S K
Sbjct: 69 DDDDDDDDIYYDGSFGAGKKMKSKPKTSKKQKGKNTKARKTKQSPSPPQELRFSSRNNKQ 128
Query: 155 ITSKGIEHDKFIQDLVKEE 173
+ + I++D+ DL++ E
Sbjct: 129 V-NYAIDYDEDDADLLESE 146
Score = 38 (18.4 bits), Expect = 0.00017, Sum P(5) = 0.00017
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 561 AVLDEGHRIRNPNAEISL 578
AVL E ++N NAEI L
Sbjct: 1084 AVLFEYQGVKNINAEIVL 1101
>UNIPROTKB|F1S594 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000014884 OMA:KSSGHER Uniprot:F1S594
Length = 866
Score = 331 (121.6 bits), Expect = 1.1e-60, Sum P(4) = 1.1e-60
Identities = 73/200 (36%), Positives = 115/200 (57%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQSCQ---------IPDYGNPERSEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S + S K +++ ++L
Sbjct: 283 GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILP 342
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+ H+VLLF Q ++ I+E + G++Y R+DG T + R L+ +N S+ F
Sbjct: 343 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 402
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 403 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 462
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 463 EEKILAAAKYKLNVDQKVIQ 482
Score = 290 (107.1 bits), Expect = 1.1e-60, Sum P(4) = 1.1e-60
Identities = 72/215 (33%), Positives = 116/215 (53%)
Query: 532 LRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRI 589
LRS + +L+TTYE + L + W Y ++DEGHR++N + +++ V R+
Sbjct: 100 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 159
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QNKL ELW+L +F+ P FE F P + G + ++
Sbjct: 160 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG----EKVDLNEEETIL 215
Query: 650 VV--LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------SE 700
++ L ++ P+LLRR+K +V AQLP+K E+V+ C ++ QR +YR A SE
Sbjct: 216 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 275
Query: 701 VEQILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
++ G +L I +RKICNHP + + E+S
Sbjct: 276 KDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEES 310
Score = 147 (56.8 bits), Expect = 1.1e-60, Sum P(4) = 1.1e-60
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L YQ G++WL L+ GI+ DEMGLGKTIQ ++ + L + P +++ P++
Sbjct: 6 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLS 65
Query: 461 LLRQWKREAEKWYPS 475
L W E +KW PS
Sbjct: 66 TLSNWAYEFDKWAPS 80
Score = 42 (19.8 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 491 RKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
R RAK +D+D E + D G+ S +
Sbjct: 837 RGSRAKPVVSDDDSEEEQEEDRSGSGSEED 866
Score = 40 (19.1 bits), Expect = 1.1e-60, Sum P(4) = 1.1e-60
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 987 GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEA-LRQSR 1045
G + E++ +L+S+F + D EE+ EE+ S+ R+ + ++ R
Sbjct: 762 GSLIYEDSIVLQSVFTSVR-QKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGR 820
Query: 1046 MLRSRD 1051
+++D
Sbjct: 821 KEKAQD 826
Score = 37 (18.1 bits), Expect = 2.2e-60, Sum P(4) = 2.2e-60
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 1016 MNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTW 1058
M A EE+ L + + +R EA R R ++ +P+W
Sbjct: 524 MIARHEEEFDLFMRMD-LDRRREEARNPKRKPRLMEEDELPSW 565
>CGD|CAL0001763 [details] [associations]
symbol:orf19.1871 species:5476 "Candida albicans" [GO:0000812
"Swr1 complex" evidence=IEA] [GO:0005198 "structural molecule
activity" evidence=IEA] [GO:0043486 "histone exchange"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0001763 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0016568 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 PROSITE:PS51204
EMBL:AACQ01000133 EMBL:AACQ01000132 RefSeq:XP_713128.1
RefSeq:XP_713174.1 ProteinModelPortal:Q59U81 STRING:Q59U81
PRIDE:Q59U81 GeneID:3645174 GeneID:3645220 KEGG:cal:CaO19.1871
KEGG:cal:CaO19.9427 KO:K11681 Uniprot:Q59U81
Length = 1641
Score = 351 (128.6 bits), Expect = 1.3e-60, Sum P(5) = 1.3e-60
Identities = 79/230 (34%), Positives = 123/230 (53%)
Query: 747 KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALID 806
K++ +A +L+ QGHR L+F Q ++LDILE FL GY Y R+DG T ++ R L +
Sbjct: 1367 KLQKLATLLQELTSQGHRALIFTQMTKVLDILEQFLNIHGYRYMRLDGATKIEDRQLLTE 1426
Query: 807 EYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866
++N + +FIL+T+ GGLG NLTGA+ VI +D DWNP+ D Q ++R RIGQ +DV +
Sbjct: 1427 KFNRDPKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPAMDKQCQDRCHRIGQVRDVHI 1486
Query: 867 YRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFFKARNMKDLFTLNDDGNGGSTET 925
YR ++ TIE + + K L N +++ + +F +++DL + D N G T
Sbjct: 1487 YRFVSEYTIESNIIKKANQKRQLDNVVIQEGEFTTDYFGKFSVRDLVS---DSNIGKEIT 1543
Query: 926 SNIFSQLSEDVNVVGXXXXXXXXXXXXXAASANADDAVGDKENNLEIGSS 975
S D + A +A + A+ D + E S+
Sbjct: 1544 DRTID-FSGDAKMGNVLAQAEDEEDRVAAGAALKEVAIDDDDFKEETRSA 1592
Score = 176 (67.0 bits), Expect = 1.3e-60, Sum P(5) = 1.3e-60
Identities = 35/81 (43%), Positives = 54/81 (66%)
Query: 652 LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNS 711
L ++ PYLLRR+K DV Q+P K EH+++C L++ QR +Y F++ ++ ++ L S N
Sbjct: 1061 LHQVLRPYLLRRLKKDVEKQMPGKYEHIVYCRLSKRQRFLYDDFMSRAKTKETL-ASGNF 1119
Query: 712 LYGIDVM---RKICNHPDLLE 729
L I+ + RK+CNHPDL E
Sbjct: 1120 LSIINCLMQLRKVCNHPDLFE 1140
Score = 172 (65.6 bits), Expect = 1.3e-60, Sum P(5) = 1.3e-60
Identities = 36/101 (35%), Positives = 55/101 (54%)
Query: 394 IPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN-MYKP 452
IP + L YQK G+ WL L+ GI+ DEMGLGKTIQ +S L L + + P
Sbjct: 815 IPSLLRGTLRPYQKQGLNWLASLYNNNTNGILADEMGLGKTIQTISLLAYLACEHHKWGP 874
Query: 453 SIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKK 493
+++ P +++ W+ E +K+ P F V + S Q ++K
Sbjct: 875 HLIIVPTSVMLNWEMEFKKFAPGFKVLTYYGSPQQRAQKRK 915
Score = 128 (50.1 bits), Expect = 1.3e-60, Sum P(5) = 1.3e-60
Identities = 26/73 (35%), Positives = 39/73 (53%)
Query: 540 ITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNK 599
IT+Y+ + + W Y +LDE H I+N + T +R+++TG P+QN
Sbjct: 927 ITSYQLVVQDQQSFKRRRWTYMILDEAHNIKNFRSTRWRALLNFNTENRLLLTGTPLQNN 986
Query: 600 LSELWSLFDFVFP 612
L ELWSL F+ P
Sbjct: 987 LMELWSLLYFLMP 999
Score = 43 (20.2 bits), Expect = 1.3e-60, Sum P(5) = 1.3e-60
Identities = 15/67 (22%), Positives = 33/67 (49%)
Query: 91 STKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSH 150
S+ E+ + ++ D+T+Q ++K V ND ++ ++ ++ L+K A L +
Sbjct: 570 SSSEEEENEE-DNTQQQINGNKKYDVNGKSND---ENDMSLS-VEELRKKYADLETSVEP 624
Query: 151 FPKGITS 157
+TS
Sbjct: 625 LSSNVTS 631
Score = 42 (19.8 bits), Expect = 1.7e-60, Sum P(5) = 1.7e-60
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 96 NDIDDGDSTEQDGREDEKSAVQASPN 121
ND D+ S+E++ E++ + Q + N
Sbjct: 564 NDSDNFSSSEEEENEEDNTQQQINGN 589
Score = 42 (19.8 bits), Expect = 8.5e-47, Sum P(5) = 8.5e-47
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 662 RRMKADVNAQLPKKTEHVLF 681
+R++ + A++ +K EHV++
Sbjct: 1234 QRLRREEQAEIKEKLEHVVY 1253
Score = 40 (19.1 bits), Expect = 5.3e-47, Sum P(5) = 5.3e-47
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 498 SDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRS--ESGLLITTYE 544
SD+++ E S D++ + + S P+ + N L S +G +++ E
Sbjct: 709 SDSESSEESSSDTEMDQSTVSEPPRSSETGSNTGLASLFTNGTIVSDEE 757
Score = 38 (18.4 bits), Expect = 9.3e-26, Sum P(2) = 9.3e-26
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 63 QEKLYNKLRA--VEFEIGAVASTVDHLRRVSTKEDNDIDD 100
Q+++ NKL+ VEFE + V + +R+ +E +I +
Sbjct: 1208 QDQI-NKLKILLVEFENSDPINYVSYYQRLRREEQAEIKE 1246
Score = 37 (18.1 bits), Expect = 1.9e-24, Sum P(4) = 1.9e-24
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 461 LLRQWKREAEKWYPSFHVELLH 482
LLR+ K++ EK P + +++
Sbjct: 1069 LLRRLKKDVEKQMPGKYEHIVY 1090
>UNIPROTKB|A5PKK5 [details] [associations]
symbol:SMARCA2 "SMARCA2 protein" species:9913 "Bos taurus"
[GO:0071778 "WINAC complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0045111 "intermediate filament cytoskeleton"
evidence=IEA] [GO:0044212 "transcription regulatory region DNA
binding" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0016514 "SWI/SNF complex"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OMA:PQEGMHQ GO:GO:0035887 OrthoDB:EOG418BMJ EMBL:DAAA02022747
EMBL:DAAA02022748 EMBL:DAAA02022749 EMBL:BC142521 IPI:IPI00854472
RefSeq:NP_001092585.1 UniGene:Bt.63204 SMR:A5PKK5 STRING:A5PKK5
Ensembl:ENSBTAT00000035681 GeneID:540904 KEGG:bta:540904
InParanoid:A5PKK5 NextBio:20878906 Uniprot:A5PKK5
Length = 1554
Score = 336 (123.3 bits), Expect = 1.5e-60, Sum P(5) = 1.5e-60
Identities = 75/200 (37%), Positives = 116/200 (58%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQS-CQIPDYGNP--------ERSEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S + Y N S K +++ ++L
Sbjct: 983 GAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILP 1042
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+ HRVLLF Q ++ I+E + + Y R+DG T + R AL+ ++N S F
Sbjct: 1043 KLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYF 1102
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ V+IFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 1103 IFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1162
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 1163 EEKILAAAKYKLNVDQKVIQ 1182
Score = 285 (105.4 bits), Expect = 1.5e-60, Sum P(5) = 1.5e-60
Identities = 72/213 (33%), Positives = 112/213 (52%)
Query: 532 LRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRI 589
LRS + +L+TTYE + L + W Y ++DEGHR++N + +++ V RI
Sbjct: 800 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRI 859
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QNKL ELW+L +F+ P FE F P + G L
Sbjct: 860 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--ERVDLNEEETILII 917
Query: 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------SEVE 702
L ++ P+LLRR+K +V +QLP+K E+V+ C ++ Q+ +YR A SE +
Sbjct: 918 RRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKD 977
Query: 703 QILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
+ G +L I +RKICNHP + + E+S
Sbjct: 978 KKGKGGAKTLMNTIMQLRKICNHPYMFQHIEES 1010
Score = 147 (56.8 bits), Expect = 1.5e-60, Sum P(5) = 1.5e-60
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 398 IFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVV 456
I L YQ G++W+ L+ GI+ DEMGLGKTIQ ++ + L + P +++
Sbjct: 702 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 761
Query: 457 CPVTLLRQWKREAEKWYPS 475
P++ L W E +KW PS
Sbjct: 762 VPLSTLSNWTYEFDKWAPS 780
Score = 52 (23.4 bits), Expect = 1.5e-60, Sum P(5) = 1.5e-60
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 88 RRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPN 121
R S + D+D ++ D E+ R++ + + PN
Sbjct: 614 RSDSEESDSDYEEEDEEEESSRQETEEKILLDPN 647
Score = 51 (23.0 bits), Expect = 7.5e-60, Sum P(6) = 7.5e-60
Identities = 28/123 (22%), Positives = 50/123 (40%)
Query: 49 PHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDG 108
P K + +DP QE+ Y +L+A +A + L + D+ + E
Sbjct: 312 PVQKPQGLDPVEIMQEREY-RLQA------RIAHRIQELENLPGSLPPDLRTKATVELKA 364
Query: 109 -------REDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIE 161
R+ + V D TL+ AL + K+ K++K Q ++E K + IE
Sbjct: 365 LRLLNFQRQLRQEVVACMRRDTTLETALNS---KAYKRSKRQTLREARMTEKLEKQQKIE 421
Query: 162 HDK 164
++
Sbjct: 422 QER 424
Score = 49 (22.3 bits), Expect = 1.5e-60, Sum P(5) = 1.5e-60
Identities = 13/66 (19%), Positives = 36/66 (54%)
Query: 987 GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRM 1046
G ++ E++ +L+S+F + A ++ +++EE EE+ + ++ A++++
Sbjct: 1449 GSQIYEDSIVLQSVFKSARQKIAKEEESEDESNEEE----EEEDEEESESEAKSVKVKIK 1504
Query: 1047 LRSRDD 1052
L +D+
Sbjct: 1505 LNKKDE 1510
Score = 46 (21.3 bits), Expect = 6.1e-60, Sum P(5) = 6.1e-60
Identities = 14/55 (25%), Positives = 29/55 (52%)
Query: 133 RLKSLKKTK--AQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQK 185
+L KK + A L+++ + +T+ EH + KE+ + +RK K+A++
Sbjct: 498 KLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQ--AQAAKEKKKRRRKKKKAEE 550
Score = 45 (20.9 bits), Expect = 7.8e-60, Sum P(5) = 7.8e-60
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 90 VSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTL 125
V+ + D++ D D E+D E+E+S+ Q + + L
Sbjct: 611 VAPRSDSEESDSDYEEED--EEEESSRQETEEKILL 644
Score = 38 (18.4 bits), Expect = 7.5e-60, Sum P(6) = 7.5e-60
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 163 DKFIQDLVKE--EHRPKRKSKEAQKPGKDRSKQQK 195
D+++ +L EH+ + +KE +K + + K ++
Sbjct: 516 DEYVANLTNLVWEHKQAQAAKEKKKRRRKKKKAEE 550
>POMBASE|SPAC3G6.01 [details] [associations]
symbol:hrp3 "ATP-dependent DNA helicase Hrp3"
species:4896 "Schizosaccharomyces pombe" [GO:0000070 "mitotic
sister chromatid segregation" evidence=IMP] [GO:0000790 "nuclear
chromatin" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005634 "nucleus" evidence=IDA]
[GO:0006338 "chromatin remodeling" evidence=NAS] [GO:0008094
"DNA-dependent ATPase activity" evidence=ISM] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IMP]
[GO:0031934 "mating-type region heterochromatin" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEP] [GO:0060303 "regulation of
nucleosome density" evidence=IMP] [GO:0030702 "chromatin silencing
at centromere" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
PomBase:SPAC3G6.01 Pfam:PF00385 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0045944 GO:GO:0006351
GO:GO:0006338 GO:GO:0030466 GO:GO:0000790 GO:GO:0000070
GO:GO:0004003 GO:GO:0031934 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 KO:K11367 HOGENOM:HOG000207917
OrthoDB:EOG4TF3TB GO:GO:0060303 PIR:T38720 RefSeq:NP_594967.1
ProteinModelPortal:O14139 MINT:MINT-4670837 STRING:O14139
EnsemblFungi:SPAC3G6.01.1 GeneID:2543064 KEGG:spo:SPAC3G6.01
OMA:HINGSST NextBio:20804092 Uniprot:O14139
Length = 1388
Score = 580 (209.2 bits), Expect = 1.8e-60, Sum P(3) = 1.8e-60
Identities = 147/401 (36%), Positives = 221/401 (55%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIR 570
Y GN +SR + ++ ++ + + LL+TTYE + L +++W Y +DE HR++
Sbjct: 455 YLGNTTSRQVIRDYEFYVDGTQKIKFNLLLTTYEYVLKDRSVLSNIKWQYMAIDEAHRLK 514
Query: 571 NPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIT 630
N + + Q + +R+++TG P+QN + EL +L DF+ PGK FE + +
Sbjct: 515 NSESSLYEALSQFKNSNRLLITGTPLQNNIRELAALVDFLMPGK------FEIREEINLE 568
Query: 631 VGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRA 690
+P + AY + L++ + PY+LRR+K DV LP K+E +L L++ Q
Sbjct: 569 -------APDEEQEAYIRS--LQEHLQPYILRRLKKDVEKSLPSKSERILRVELSDLQMY 619
Query: 691 VYRAFLASSE---VEQILDGSRNSLYGIDV-MRKICNHPDLLER-EQSC--QIPDYGNPE 743
Y+ L + + I GS+ SL I V ++K NHP L + E+S +I G +
Sbjct: 620 WYKNILTRNYRVLTQSISSGSQISLLNIVVELKKASNHPYLFDGVEESWMQKINSQGRRD 679
Query: 744 R--------SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGL 795
S KM ++ ++L + GHRVL+F+Q +MLDIL +L GY ++R+DG
Sbjct: 680 EVLKGLIMNSGKMVLLDKLLSRLRRDGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGT 739
Query: 796 TPVKQRMALIDEYN--NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARE 853
P R ID +N NS D F+F+L+T+ GGLG NL A+ VIIFD DWNP D+QA
Sbjct: 740 VPAAVRRTSIDHFNAPNSPD-FVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQAMA 798
Query: 854 RAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL 894
RA RIGQK V VYRL+++ TIEE V R K L I+
Sbjct: 799 RAHRIGQKNHVMVYRLLSKDTIEEDVLERARRKMILEYAII 839
Score = 139 (54.0 bits), Expect = 1.8e-60, Sum P(3) = 1.8e-60
Identities = 28/72 (38%), Positives = 41/72 (56%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L D+Q GV W+ L + GI+ DEMGLGKT+Q ++FL L H + P +VV P++
Sbjct: 375 LRDFQLTGVNWMAYLWHKNENGILADEMGLGKTVQTVAFLSYLAHSLRQHGPFLVVVPLS 434
Query: 461 LLRQWKREAEKW 472
+ W+ W
Sbjct: 435 TVPAWQETLALW 446
Score = 38 (18.4 bits), Expect = 1.8e-60, Sum P(3) = 1.8e-60
Identities = 10/42 (23%), Positives = 19/42 (45%)
Query: 1021 EEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTWTGKS 1062
EE+ RL E+ + Q + R+ + P+++G S
Sbjct: 940 EEEDRLREEEEALKQEIELSSRRGNRPYPSSAVESPSYSGTS 981
>UNIPROTKB|K7GT64 [details] [associations]
symbol:LOC100622433 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GeneTree:ENSGT00550000074659 EMBL:FP102365
Ensembl:ENSSSCT00000034320 Uniprot:K7GT64
Length = 980
Score = 331 (121.6 bits), Expect = 2.0e-60, Sum P(5) = 2.0e-60
Identities = 73/200 (36%), Positives = 115/200 (57%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQSCQ---------IPDYGNPERSEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S + S K +++ ++L
Sbjct: 364 GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILP 423
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+ H+VLLF Q ++ I+E + G++Y R+DG T + R L+ +N S+ F
Sbjct: 424 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 483
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 484 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 543
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 544 EEKILAAAKYKLNVDQKVIQ 563
Score = 290 (107.1 bits), Expect = 2.0e-60, Sum P(5) = 2.0e-60
Identities = 72/215 (33%), Positives = 116/215 (53%)
Query: 532 LRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRI 589
LRS + +L+TTYE + L + W Y ++DEGHR++N + +++ V R+
Sbjct: 181 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 240
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QNKL ELW+L +F+ P FE F P + G + ++
Sbjct: 241 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG----EKVDLNEEETIL 296
Query: 650 VV--LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------SE 700
++ L ++ P+LLRR+K +V AQLP+K E+V+ C ++ QR +YR A SE
Sbjct: 297 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 356
Query: 701 VEQILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
++ G +L I +RKICNHP + + E+S
Sbjct: 357 KDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEES 391
Score = 147 (56.8 bits), Expect = 2.0e-60, Sum P(5) = 2.0e-60
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L YQ G++WL L+ GI+ DEMGLGKTIQ ++ + L + P +++ P++
Sbjct: 87 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLS 146
Query: 461 LLRQWKREAEKWYPS 475
L W E +KW PS
Sbjct: 147 TLSNWAYEFDKWAPS 161
Score = 45 (20.9 bits), Expect = 2.0e-60, Sum P(5) = 2.0e-60
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 244 QQPGPSNKQNVPDEQEARSNDPFSASVDR--ALRMMSEAAQ 282
+QP P+ +P E++ + DP S V A ++ A Q
Sbjct: 5 EQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQ 45
Score = 42 (19.8 bits), Expect = 6.0e-05, Sum P(3) = 6.0e-05
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 491 RKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
R RAK +D+D E + D G+ S +
Sbjct: 951 RGSRAKPVVSDDDSEEEQEEDRSGSGSEED 980
Score = 40 (19.1 bits), Expect = 2.0e-60, Sum P(5) = 2.0e-60
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 987 GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEA-LRQSR 1045
G + E++ +L+S+F + D EE+ EE+ S+ R+ + ++ R
Sbjct: 876 GSLIYEDSIVLQSVFTSVR-QKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGR 934
Query: 1046 MLRSRD 1051
+++D
Sbjct: 935 KEKAQD 940
Score = 37 (18.1 bits), Expect = 4.1e-60, Sum P(5) = 4.1e-60
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 1016 MNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTW 1058
M A EE+ L + + +R EA R R ++ +P+W
Sbjct: 638 MIARHEEEFDLFMRMD-LDRRREEARNPKRKPRLMEEDELPSW 679
>RGD|1564130 [details] [associations]
symbol:Btaf1 "BTAF1 RNA polymerase II, B-TFIID transcription
factor-associated, (Mot1 homolog, S. cerevisiae)" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 RGD:1564130 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AC096310
IPI:IPI00370629 PRIDE:F1LW16 Ensembl:ENSRNOT00000024465
Uniprot:F1LW16
Length = 1848
Score = 351 (128.6 bits), Expect = 2.1e-60, Sum P(4) = 2.1e-60
Identities = 72/168 (42%), Positives = 102/168 (60%)
Query: 763 HRVLLFAQTQQMLDILESFLIAS---GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFIL 819
HR+L+F Q + MLDI+E L+ Y R+DG P QR +++ +NN + + +L
Sbjct: 1644 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLL 1703
Query: 820 TTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKV 879
TT VGGLG NLTGA+ V+ + DWNP D+QA +RA RIGQK+ V VYRLITRGT+EEK+
Sbjct: 1704 TTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKI 1763
Query: 880 YHRQIYKHFLTNKILKNPQQR-RFFKARNMKDLFTLNDDGNGGSTETS 926
Q +K + N ++ + + DLFTL+ DG ++S
Sbjct: 1764 MGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDGKAEKADSS 1811
Score = 278 (102.9 bits), Expect = 2.1e-60, Sum P(4) = 2.1e-60
Identities = 60/161 (37%), Positives = 89/161 (55%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
L++ +Y+ +R + ++++ Y +LDEGH I+N ++S KQL +RII++G PIQ
Sbjct: 1377 LIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQ 1436
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N + ELWSLFDF+ PG LG F A + PI A +S + L ++
Sbjct: 1437 NNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVL 1496
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS 698
P+LLRRMK DV LP K +C+L+ Q +Y F S
Sbjct: 1497 PFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKS 1537
Score = 132 (51.5 bits), Expect = 2.1e-60, Sum P(4) = 2.1e-60
Identities = 38/102 (37%), Positives = 49/102 (48%)
Query: 393 KIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN---- 448
KIP I L YQ+ GV WL L+ + GI+ D+MGLGKT+Q + L H
Sbjct: 1256 KIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCQRAQEY 1315
Query: 449 --------MYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLH 482
M PS+VVCP TL W E K+ ++ LH
Sbjct: 1316 ARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLH 1357
Score = 63 (27.2 bits), Expect = 2.1e-60, Sum P(4) = 2.1e-60
Identities = 25/80 (31%), Positives = 37/80 (46%)
Query: 698 SSEVEQI-LDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLK 756
S E E+ L + + + +RK+CNHP L+ Q P++ N +EK+ V L
Sbjct: 1553 SEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQH---PEFKNT--TEKLAVQNSSLH 1607
Query: 757 VWKDQGHRVLLFAQTQQMLD 776
D H L A Q +LD
Sbjct: 1608 ---DIQHAPKLSALKQLLLD 1624
Score = 52 (23.4 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 1131 GLERQFEVASSSANVARFADTRTSRSSKNASDVQPEILIRQICTFMQQR 1179
G ERQF A + D R+S + A + + L RQ+ F+ +R
Sbjct: 1455 GTERQF-AARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRR 1502
Score = 37 (18.1 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 701 VEQILDGSRNSLYGIDV 717
+EQ+LDG + Y I V
Sbjct: 1243 LEQLLDGKKLENYKIPV 1259
>TAIR|locus:2062840 [details] [associations]
symbol:SYD "SPLAYED" species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0009908 "flower development"
evidence=IMP] [GO:0016887 "ATPase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=IPI] [GO:0010199 "organ
boundary specification between lateral organs and the meristem"
evidence=IGI] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=NAS] [GO:0040029 "regulation of gene expression,
epigenetic" evidence=RCA;IMP] [GO:0009611 "response to wounding"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0000226
"microtubule cytoskeleton organization" evidence=RCA] [GO:0000911
"cytokinesis by cell plate formation" evidence=RCA] [GO:0006306
"DNA methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0007267 "cell-cell signaling" evidence=RCA]
[GO:0009616 "virus induced gene silencing" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0016567
"protein ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0050826 "response to
freezing" evidence=RCA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00951 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 EMBL:CP002685 GO:GO:0009611 GO:GO:0006355
GO:GO:0003677 GO:GO:0003682 GO:GO:0016887 GO:GO:0004386
GO:GO:0009908 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 GO:GO:0010199 GO:GO:0040029 InterPro:IPR014012
PROSITE:PS51204 IPI:IPI00516285 RefSeq:NP_850116.1 UniGene:At.22414
PRIDE:F4IHS2 EnsemblPlants:AT2G28290.1 GeneID:817375
KEGG:ath:AT2G28290 OMA:SDLYAIS Uniprot:F4IHS2
Length = 3574
Score = 571 (206.1 bits), Expect = 2.2e-60, Sum P(4) = 2.2e-60
Identities = 127/366 (34%), Positives = 205/366 (56%)
Query: 526 LLINRVLRSESGLLITTYEQLRLLGE--KLLDVEWGYAVLDEGHRIRNPNAEISLVCKQL 583
L +++ + +L+TTYE L + KL + W Y ++DEGHRI+N + +++ K
Sbjct: 844 LFKEQIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHY 903
Query: 584 QTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVS 643
+ HR+++TG P+QN L ELW+L +F+ P F F P G ++A +S
Sbjct: 904 VSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLS 963
Query: 644 TAYRCAVV--LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEV 701
++ L ++ P++LRR+K V +LP+K E ++ C + Q+ + + +
Sbjct: 964 EEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLIRCEASAYQKLLMKR--VEDNL 1021
Query: 702 EQILDGSRNSLYG-IDVMRKICNHPDLLE---REQSCQIPDYGNP---ERSEKMKVVAQV 754
I + +++ + +R ICNHP L + E + IP + P K++++ ++
Sbjct: 1022 GSIGNAKSRAVHNSVMELRNICNHPYLSQLHSEEVNNIIPKHFLPPIVRLCGKLEMLDRM 1081
Query: 755 LKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNS-SD 813
L K HRVL F+ ++LD++E +L GY+Y R+DG T R ALID +N S S
Sbjct: 1082 LPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSP 1141
Query: 814 VFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRG 873
FIF+L+ + GG+G NL A+ VI+FD DWNP D+QA+ RA RIGQK+DV V R T
Sbjct: 1142 FFIFLLSIRAGGVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVN 1201
Query: 874 TIEEKV 879
++EE+V
Sbjct: 1202 SVEEQV 1207
Score = 158 (60.7 bits), Expect = 2.2e-60, Sum P(4) = 2.2e-60
Identities = 35/85 (41%), Positives = 48/85 (56%)
Query: 395 PESIFNN-LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKP 452
P S+ L +YQ G++WL L+ GI+ DEMGLGKT+QV+S + L N P
Sbjct: 746 PSSLVGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGP 805
Query: 453 SIVVCPVTLLRQWKREAEKWYPSFH 477
+VV P ++L W+ E W PS H
Sbjct: 806 FLVVVPSSVLPGWQSEINFWAPSIH 830
Score = 53 (23.7 bits), Expect = 2.2e-60, Sum P(4) = 2.2e-60
Identities = 23/92 (25%), Positives = 43/92 (46%)
Query: 96 NDIDDGDSTEQDGREDEKSAVQASPNDM-TLQHALTADRLKSLKKTKAQLVKELSHFPKG 154
N++ + S D KS ++ + LQ L ++ + + K A V+ L + K
Sbjct: 500 NELKESVSLSDDISAKTKSVIELKKLQLLNLQRRLRSEFVYNFFKPIATDVEHLKSYKKH 559
Query: 155 ITSKGIEH-DKFIQDLVKEEHRPKRKSKEAQK 185
+ I+ +K+ Q + KEE + R+ +E QK
Sbjct: 560 KHGRRIKQLEKYEQKM-KEERQ--RRIRERQK 588
Score = 44 (20.5 bits), Expect = 2.2e-60, Sum P(4) = 2.2e-60
Identities = 27/98 (27%), Positives = 37/98 (37%)
Query: 1077 STVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIR---------GNQENA 1127
STVG +K +GS + + +G G A +V S E L +
Sbjct: 1337 STVG---MKRKDGSMGGL--DTHQYGRGKRAREVRSYEEKLTEEEFEKLCQTESPDSPQG 1391
Query: 1128 VGAGLERQFEVASSSANVARFADTRTSRSSKNASDVQP 1165
G G ER +S+ V +DT S A VQP
Sbjct: 1392 KGEGSERSLANDTSNIPVENSSDTLLPTSPTQAITVQP 1429
Score = 39 (18.8 bits), Expect = 0.00023, Sum P(4) = 0.00023
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 998 KSLFDANGIHSAMN-----HDAIMNAHDEEKM 1024
+ LF +H N ++ +MN HD K+
Sbjct: 842 RKLFKEQIVHQKFNVLLTTYEYLMNKHDRPKL 873
Score = 38 (18.4 bits), Expect = 9.1e-60, Sum P(4) = 9.1e-60
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 1057 TWTGKSGTAGAPSSVRKKFGSTVGSQLIKPLEGSSSN 1093
T T + A A + S + S++ K EGS+SN
Sbjct: 1566 TATSLASDAEATKFALPRSASEIVSRVPKANEGSTSN 1602
>UNIPROTKB|E9PTG1 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0016514
"SWI/SNF complex" evidence=IEA] [GO:0030308 "negative regulation of
cell growth" evidence=IEA] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=IEA] [GO:0044212 "transcription
regulatory region DNA binding" evidence=IEA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IEA] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] [GO:0071778 "WINAC complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0045892
GO:GO:0008285 GO:GO:0030308 GO:GO:0045944 GO:GO:0044212
GO:GO:0045111 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0071565 GO:GO:0004386 GO:GO:0001105 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ GO:GO:0035887 IPI:IPI00464435
Ensembl:ENSRNOT00000016740 ArrayExpress:E9PTG1 Uniprot:E9PTG1
Length = 1597
Score = 336 (123.3 bits), Expect = 2.2e-60, Sum P(5) = 2.2e-60
Identities = 75/200 (37%), Positives = 116/200 (58%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQS-CQIPDYGNP--------ERSEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S + Y N S K +++ ++L
Sbjct: 1008 GAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILP 1067
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+ HRVLLF Q ++ I+E + + Y R+DG T + R AL+ ++N S F
Sbjct: 1068 KLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYF 1127
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ V+IFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 1128 IFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1187
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 1188 EEKILAAAKYKLNVDQKVIQ 1207
Score = 285 (105.4 bits), Expect = 2.2e-60, Sum P(5) = 2.2e-60
Identities = 72/213 (33%), Positives = 112/213 (52%)
Query: 532 LRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRI 589
LRS + +L+TTYE + L + W Y ++DEGHR++N + +++ V RI
Sbjct: 825 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRI 884
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QNKL ELW+L +F+ P FE F P + G L
Sbjct: 885 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--ERVDLNEEETILII 942
Query: 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------SEVE 702
L ++ P+LLRR+K +V +QLP+K E+V+ C ++ Q+ +YR A SE +
Sbjct: 943 RRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKD 1002
Query: 703 QILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
+ G +L I +RKICNHP + + E+S
Sbjct: 1003 KKGKGGAKTLMNTIMQLRKICNHPYMFQHIEES 1035
Score = 147 (56.8 bits), Expect = 2.2e-60, Sum P(5) = 2.2e-60
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 398 IFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVV 456
I L YQ G++W+ L+ GI+ DEMGLGKTIQ ++ + L + P +++
Sbjct: 727 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 786
Query: 457 CPVTLLRQWKREAEKWYPS 475
P++ L W E +KW PS
Sbjct: 787 VPLSTLSNWTYEFDKWAPS 805
Score = 52 (23.4 bits), Expect = 2.2e-60, Sum P(5) = 2.2e-60
Identities = 15/75 (20%), Positives = 39/75 (52%)
Query: 987 GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRM 1046
G ++ E++ +L+S+F + A ++ +++EE EE+ + ++ A++++
Sbjct: 1492 GSQIYEDSIVLQSVFKSARQKIAKEEESEEESNEEE----EEEDEEESEAEAKSVKVKIK 1547
Query: 1047 LRSRDDISVPTWTGK 1061
L +++ T GK
Sbjct: 1548 LNKKEEKGRDTGKGK 1562
Score = 52 (23.4 bits), Expect = 2.3e-60, Sum P(6) = 2.3e-60
Identities = 27/117 (23%), Positives = 47/117 (40%)
Query: 49 PHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRR-VSTKEDNDIDDGDSTEQD 107
P K + +DP QE+ Y + I + S L + TK ++
Sbjct: 337 PIQKPQGLDPVEILQEREYRLQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQ 396
Query: 108 GREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDK 164
R+ + V D TL+ AL + K+ K++K Q ++E K + IE ++
Sbjct: 397 -RQLRQEVVACMRRDTTLETALNS---KAYKRSKRQTLREARMTEKLEKQQKIEQER 449
Score = 48 (22.0 bits), Expect = 2.2e-60, Sum P(5) = 2.2e-60
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 88 RRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPN 121
R S + ++D ++ D E+ R++ + + PN
Sbjct: 639 RSDSEESESDYEEEDEEEESSRQETEEKILLDPN 672
Score = 42 (19.8 bits), Expect = 9.4e-60, Sum P(5) = 9.4e-60
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 133 RLKSLKKTK--AQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQK 185
+L KK + A L+++ + +T+ EH + KE+ + +R+ K+A++
Sbjct: 523 KLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQ--AQAAKEKKKRRRRRKKAEE 575
Score = 41 (19.5 bits), Expect = 1.2e-59, Sum P(5) = 1.2e-59
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 90 VSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTL 125
V+ + D++ + D E+D E+E+S+ Q + + L
Sbjct: 636 VAPRSDSEESESDYEEED--EEEESSRQETEEKILL 669
Score = 40 (19.1 bits), Expect = 2.3e-60, Sum P(6) = 2.3e-60
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 163 DKFIQDLVKE--EHRPKRKSKEAQKPGKDRSKQQK 195
D+++ +L EH+ + +KE +K + R K ++
Sbjct: 541 DEYVANLTNLVWEHKQAQAAKEKKKRRRRRKKAEE 575
Score = 37 (18.1 bits), Expect = 3.1e-59, Sum P(5) = 3.1e-59
Identities = 5/26 (19%), Positives = 18/26 (69%)
Query: 171 KEEHRPKRKSKEAQKPGKDRSKQQKT 196
+++ + +++ ++ Q+P + + QQ+T
Sbjct: 219 QQQQQQQQQQQQQQQPQQPQQPQQQT 244
Score = 37 (18.1 bits), Expect = 7.9e-59, Sum P(6) = 7.9e-59
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 1173 CTFMQQRGGSSNSACIVEHFKDRVPS-KDLPLFKNLLKEIATLQK 1216
C + G+S+ + E F ++PS K+LP + L+++ +K
Sbjct: 1415 CNSQLEIEGNSSGRQLSEVFI-QLPSRKELPEYYELIRKPVDFKK 1458
>ZFIN|ZDB-GENE-091113-61 [details] [associations]
symbol:si:dkey-76p7.6 "si:dkey-76p7.6" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016568 "chromatin modification" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005694 "chromosome" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-091113-61 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 GO:GO:0035861 GeneTree:ENSGT00630000089890
EMBL:BX927385 IPI:IPI00901431 Ensembl:ENSDART00000113101
Bgee:E7F1C4 Uniprot:E7F1C4
Length = 954
Score = 321 (118.1 bits), Expect = 2.7e-60, Sum P(4) = 2.7e-60
Identities = 63/133 (47%), Positives = 90/133 (67%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K+ ++ Q+L K++G RV+LF+Q MLDILE FL + Y R+DG TP+ R+ L
Sbjct: 781 SGKLSLLTQLLNSLKEKGDRVVLFSQFTMMLDILEVFLRHHKHRYNRLDGSTPMSDRIGL 840
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
ID++N D+F+F+L+T+ GGLG NLT AN VI+ D D NP D QA R R+GQ + V
Sbjct: 841 IDQFNTDQDIFVFLLSTRAGGLGINLTSANVVILHDIDCNPYNDKQAEGRCHRVGQTKTV 900
Query: 865 TVYRLITRGTIEE 877
V +LI++ +IE+
Sbjct: 901 KVIKLISKDSIED 913
Score = 241 (89.9 bits), Expect = 2.7e-60, Sum P(4) = 2.7e-60
Identities = 70/228 (30%), Positives = 127/228 (55%)
Query: 512 YEGNLSSRNPKKWDLLINRVLRSESGLLITTYE-QLRLLGEKLL--DVEWGYAVLDEGHR 568
Y G+ R ++++L N+++ E ++++TY + ++ L ++ YAV DEGH
Sbjct: 508 YYGSADDRKYMRYEIL-NQIV--EYNIIVSTYNLAIGNSSDRSLFCKLKLEYAVFDEGHL 564
Query: 569 IRNPNAEISLVCKQLQTV---HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEF 625
++N N SL + L + +R+++TG P+QN L EL SL +F+ P +F +
Sbjct: 565 LKNMN---SLRYRHLMAINAKYRLLLTGTPLQNNLLELMSLLNFIMPN------MFSSST 615
Query: 626 AVPITVGGYANASPLQVSTAYRCAVVLRDLIM-PYLLRRMKADVNAQLPKKTEHVLFCSL 684
+ + ++ S + S+ R + LIM P++LRR+K++V QLP K E V FC++
Sbjct: 616 SQIAKM--FSMKSSEEQSSFERDRITHAKLIMKPFILRRVKSEVLKQLPAKEEQVEFCAM 673
Query: 685 TEEQRAVYRAFLASSEVEQILDGSRNSLYGIDV-MRKICNHPDLLERE 731
+E Q+ +Y A L +++ +G + L + + +RK+ NHP LL R+
Sbjct: 674 SERQQELYSALL--HKLKHSSNGEKRELTNVMMQLRKMSNHP-LLHRQ 718
Score = 198 (74.8 bits), Expect = 2.7e-60, Sum P(4) = 2.7e-60
Identities = 42/101 (41%), Positives = 57/101 (56%)
Query: 390 GGLKIPESIFNNLFD---YQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF 446
G + PE I ++ F YQ +G+ WL LH + GI+ DEMGLGKTIQ +SFL L+
Sbjct: 415 GSMTQPE-ILSSTFQLKPYQLIGLNWLVLLHQNKLSGILADEMGLGKTIQAISFLAHLYQ 473
Query: 447 SNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQD 487
+ P ++ P + L W RE W PSF V + + SA D
Sbjct: 474 EGNHGPHLITVPASTLDNWVRELNLWCPSFKVLVYYGSADD 514
Score = 53 (23.7 bits), Expect = 7.8e-25, Sum P(2) = 7.8e-25
Identities = 21/77 (27%), Positives = 33/77 (42%)
Query: 484 SAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINR---VLRSESGLLI 540
S+Q+ RK S+ D++ EG D E L K L N VL+ L+
Sbjct: 149 SSQESDSRKGGRVSAADDSEEEGQRSKDQERMLRKLQRKFPHLNKNELRDVLQEHDWLID 208
Query: 541 TTYEQLRLLGEKLLDVE 557
E LR+ + +++ E
Sbjct: 209 DALETLRMFSDLVVESE 225
Score = 50 (22.7 bits), Expect = 1.1e-31, Sum P(4) = 1.1e-31
Identities = 16/62 (25%), Positives = 28/62 (45%)
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYK----HFLTNKILKNPQQRRFFKARNMKDLFTL 914
G+K+++T + R + HRQ Y ++ +LK P R A +D+ L
Sbjct: 694 GEKRELTNVMMQLRKMSNHPLLHRQFYTTEKLKAMSKLMLKEPSHRDADPALIKEDMEVL 753
Query: 915 ND 916
+D
Sbjct: 754 SD 755
Score = 48 (22.0 bits), Expect = 2.7e-60, Sum P(4) = 2.7e-60
Identities = 32/123 (26%), Positives = 54/123 (43%)
Query: 51 DKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGRE 110
D SE S QE++ KL+ +F + LR V + D IDD T + +
Sbjct: 165 DDSEEEGQRSKDQERMLRKLQR-KFP----HLNKNELRDVLQEHDWLIDDALETLRMFSD 219
Query: 111 DEKSAVQASPNDMTLQHALTADRLKSLKKTKAQL-VKELSHFPKGITSKGIEHDKFIQDL 169
V S +D + Q + A + + +T+ Q V +LS PK S+ ++ + Q +
Sbjct: 220 ----LVVESEDDSS-QTSTPAKHTRRVAETRPQAQVTKLSSPPKPKPSRPLDGTRTSQRI 274
Query: 170 VKE 172
K+
Sbjct: 275 AKQ 277
Score = 37 (18.1 bits), Expect = 4.3e-10, Sum P(3) = 4.3e-10
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 911 LFTLNDDGNGGSTETSNIFSQLSEDVN 937
L L NG E +N+ QL + N
Sbjct: 685 LHKLKHSSNGEKRELTNVMMQLRKMSN 711
>UNIPROTKB|F1S3V8 [details] [associations]
symbol:RAD54L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051276 "chromosome organization" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0036310 "annealing
helicase activity" evidence=IEA] [GO:0010212 "response to ionizing
radiation" evidence=IEA] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0042493 GO:GO:0003677
GO:GO:0010212 GO:GO:0000724 GO:GO:0004386 GO:GO:0051276
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 OMA:TYQALMG EMBL:CU694667
Ensembl:ENSSSCT00000004320 Uniprot:F1S3V8
Length = 747
Score = 371 (135.7 bits), Expect = 2.9e-60, Sum P(3) = 2.9e-60
Identities = 74/178 (41%), Positives = 114/178 (64%)
Query: 742 PERSEKMKVVAQVLKVWKDQGH-RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQ 800
P+ S KM V+ +L V + + +V+L + Q LD+ E A Y Y R+DG +K+
Sbjct: 492 PQLSGKMLVLDYILAVTRSRSSDKVVLVSNYTQTLDLFEKLCRARRYLYVRLDGTMSIKK 551
Query: 801 RMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIG 859
R +++ +N+ SS F+F+L++K GG G NL GANR+++FDPDWNP+ D QA R WR G
Sbjct: 552 RAKVVERFNSPSSPDFVFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDG 611
Query: 860 QKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLND 916
QK+ +YRL++ GTIEEK++ RQ +K L++ ++ Q R F +K+LFTL++
Sbjct: 612 QKKTCYIYRLLSAGTIEEKIFQRQSHKKALSSCVVDEEQDVERHFSLGELKELFTLDE 669
Score = 262 (97.3 bits), Expect = 2.9e-60, Sum P(3) = 2.9e-60
Identities = 70/202 (34%), Positives = 101/202 (50%)
Query: 530 RVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRI 589
R R S +LI +YE RL L G + DEGHR++N + L T R+
Sbjct: 262 RGARVPSPILIISYETFRLHVGVLQKGSVGLVICDEGHRLKNSENQTYQALDSLNTSRRV 321
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
+++G PIQN L E +SL FV G LG F+ F +PI G A AS
Sbjct: 322 LISGTPIQNDLLEYFSLVHFVNSGLLGTAHEFKKRFELPILKGRDAAASEEDRRLGEERL 381
Query: 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSE-VEQILDG- 707
L ++ L+RR ++ LP K E V+ C LT Q +Y+ FL ++ E++ +G
Sbjct: 382 RELTSIVNRCLIRRTSDILSKYLPVKIEQVVCCRLTPLQTELYKRFLRQAKPAEELREGK 441
Query: 708 -SRNSLYGIDVMRKICNHPDLL 728
S +SL I ++K+CNHP L+
Sbjct: 442 MSVSSLSSITSLKKLCNHPALI 463
Score = 118 (46.6 bits), Expect = 2.9e-60, Sum P(3) = 2.9e-60
Identities = 31/78 (39%), Positives = 43/78 (55%)
Query: 405 YQKVGVQWLWELHCQRA-----GGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSI---- 454
+Q+ GV++LWE R G I+ DEMGLGKT+Q ++ + L S KP I
Sbjct: 156 HQREGVRFLWECVTSRRIPGSHGCIMADEMGLGKTLQCITLMWTLLRQSPDCKPEIDKAV 215
Query: 455 VVCPVTLLRQWKREAEKW 472
VV P +L++ W E KW
Sbjct: 216 VVSPSSLVKNWYNEVGKW 233
Score = 37 (18.1 bits), Expect = 4.0e-29, Sum P(2) = 4.0e-29
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 148 LSHFPKGITSKGIE 161
L FP G +SK +E
Sbjct: 478 LDFFPPGYSSKALE 491
>MGI|MGI:99603 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0001105 "RNA polymerase II transcription coactivator activity"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0006325 "chromatin organization"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IMP] [GO:0016514 "SWI/SNF complex"
evidence=ISO;TAS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0016817 "hydrolase activity, acting on acid anhydrides"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IMP] [GO:0044212 "transcription regulatory region DNA
binding" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0071564 "npBAF complex"
evidence=IDA] [GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778
"WINAC complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 MGI:MGI:99603 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0007399 GO:GO:0030308
GO:GO:0045944 GO:GO:0044212 GO:GO:0045111 GO:GO:0000790
GO:GO:0071564 GO:GO:0016514 GO:GO:0071565 GO:GO:0004386
GO:GO:0001105 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778 KO:K11647
ChiTaRS:SMARCA2 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
EMBL:BC075641 IPI:IPI01018407 RefSeq:NP_035546.2 UniGene:Mm.313303
ProteinModelPortal:Q6DIC0 SMR:Q6DIC0 DIP:DIP-48888N STRING:Q6DIC0
PhosphoSite:Q6DIC0 PaxDb:Q6DIC0 PRIDE:Q6DIC0 GeneID:67155
KEGG:mmu:67155 UCSC:uc008hbn.1 InParanoid:Q6DIC0 OrthoDB:EOG418BMJ
NextBio:323746 Bgee:Q6DIC0 Genevestigator:Q6DIC0 Uniprot:Q6DIC0
Length = 1577
Score = 336 (123.3 bits), Expect = 3.3e-60, Sum P(5) = 3.3e-60
Identities = 75/200 (37%), Positives = 116/200 (58%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQS-CQIPDYGNP--------ERSEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S + Y N S K +++ ++L
Sbjct: 1006 GAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILP 1065
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+ HRVLLF Q ++ I+E + + Y R+DG T + R AL+ ++N S F
Sbjct: 1066 KLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYF 1125
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ V+IFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 1126 IFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1185
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 1186 EEKILAAAKYKLNVDQKVIQ 1205
Score = 285 (105.4 bits), Expect = 3.3e-60, Sum P(5) = 3.3e-60
Identities = 72/213 (33%), Positives = 112/213 (52%)
Query: 532 LRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRI 589
LRS + +L+TTYE + L + W Y ++DEGHR++N + +++ V RI
Sbjct: 823 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRI 882
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QNKL ELW+L +F+ P FE F P + G L
Sbjct: 883 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--ERVDLNEEETILII 940
Query: 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------SEVE 702
L ++ P+LLRR+K +V +QLP+K E+V+ C ++ Q+ +YR A SE +
Sbjct: 941 RRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKD 1000
Query: 703 QILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
+ G +L I +RKICNHP + + E+S
Sbjct: 1001 KKGKGGAKTLMNTIMQLRKICNHPYMFQHIEES 1033
Score = 147 (56.8 bits), Expect = 3.3e-60, Sum P(5) = 3.3e-60
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 398 IFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVV 456
I L YQ G++W+ L+ GI+ DEMGLGKTIQ ++ + L + P +++
Sbjct: 725 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 784
Query: 457 CPVTLLRQWKREAEKWYPS 475
P++ L W E +KW PS
Sbjct: 785 VPLSTLSNWTYEFDKWAPS 803
Score = 52 (23.4 bits), Expect = 6.7e-60, Sum P(6) = 6.7e-60
Identities = 27/117 (23%), Positives = 47/117 (40%)
Query: 49 PHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRR-VSTKEDNDIDDGDSTEQD 107
P K + +DP QE+ Y + I + S L + TK ++
Sbjct: 335 PIQKPQGLDPVEILQEREYRLQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQ 394
Query: 108 GREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDK 164
R+ + V D TL+ AL + K+ K++K Q ++E K + IE ++
Sbjct: 395 -RQLRQEVVACMRRDTTLETALNS---KAYKRSKRQTLREARMTEKLEKQQKIEQER 447
Score = 50 (22.7 bits), Expect = 3.3e-60, Sum P(5) = 3.3e-60
Identities = 15/75 (20%), Positives = 38/75 (50%)
Query: 987 GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRM 1046
G ++ E++ +L+S+F + A ++ +++EE EE + ++ A++++
Sbjct: 1472 GSQIYEDSIVLQSVFKSARQKIAKEEESEEESNEEE----EEDDEEESESEAKSVKVKIK 1527
Query: 1047 LRSRDDISVPTWTGK 1061
L +++ T GK
Sbjct: 1528 LNKKEEKGRDTGKGK 1542
Score = 48 (22.0 bits), Expect = 3.3e-60, Sum P(5) = 3.3e-60
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 88 RRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPN 121
R S + ++D ++ D E+ R++ + + PN
Sbjct: 637 RSDSEESESDYEEEDEEEESSRQETEEKILLDPN 670
Score = 43 (20.2 bits), Expect = 1.1e-59, Sum P(5) = 1.1e-59
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 133 RLKSLKKTK--AQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQK 185
+L KK + A L+++ + +T+ EH + KE+ + +R+ K+A++
Sbjct: 521 KLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQ--AQAAKEKKKRRRRKKKAEE 573
Score = 41 (19.5 bits), Expect = 1.8e-59, Sum P(5) = 1.8e-59
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 90 VSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTL 125
V+ + D++ + D E+D E+E+S+ Q + + L
Sbjct: 634 VAPRSDSEESESDYEEED--EEEESSRQETEEKILL 667
Score = 39 (18.8 bits), Expect = 2.8e-59, Sum P(5) = 2.8e-59
Identities = 8/34 (23%), Positives = 21/34 (61%)
Query: 167 QDLVKEEHRPKRKSKEAQ-KPGKDRSKQQKTVSV 199
Q +++ +P++ ++AQ +P + + +QQ+ V
Sbjct: 227 QQQQQQQQQPQQPQQQAQAQPQQQQQQQQQPALV 260
Score = 37 (18.1 bits), Expect = 6.7e-60, Sum P(6) = 6.7e-60
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 163 DKFIQDLVKE--EHRPKRKSKEAQKPGKDRSKQQK 195
D+++ +L EH+ + +KE +K + + K ++
Sbjct: 539 DEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEE 573
>UNIPROTKB|B6ZLK2 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 Pfam:PF00385
GO:GO:0005524 GO:GO:0005634 GO:GO:0000775 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 EMBL:AB465210 IPI:IPI00573130 UniGene:Gga.4301
UniGene:Gga.8463 STRING:B6ZLK2 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 Uniprot:B6ZLK2
Length = 1719
Score = 536 (193.7 bits), Expect = 4.4e-60, Sum P(4) = 4.4e-60
Identities = 133/398 (33%), Positives = 220/398 (55%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEKLLD-VEWGYAVLDEGHRI 569
Y G+++SRN + + + + R + +L+TTYE L L + L + W + +DE HR+
Sbjct: 557 YLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEIL-LKDKSFLGGLNWAFIGVDEAHRL 615
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629
+N ++ + ++ HR+++TG P+QN L ELWSL F+ P K FE E
Sbjct: 616 KNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKGR 675
Query: 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQR 689
G YA+ L + P+LLRR+K DV LP K E +L ++ Q+
Sbjct: 676 EYG-YAS---------------LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQK 719
Query: 690 AVYRAFLASSEVEQILDGSRNSLYG-IDVM---RKICNHPDLLEREQSCQIPDYGNPE-- 743
Y+ ++ + + + GS+ S G +++M +K CNH L++ + Y E
Sbjct: 720 QYYK-WILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEF--YNKQEAL 776
Query: 744 ----RSE-KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPV 798
RS K+ ++ ++L +++G+RVL+F+Q +MLDIL +L + ++R+DG
Sbjct: 777 QHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKG 836
Query: 799 KQRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWR 857
+ R +D +N S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA R
Sbjct: 837 ELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHR 896
Query: 858 IGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
IGQK+ V +YRL+T+G++EE + R K L + +++
Sbjct: 897 IGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQ 934
Score = 171 (65.3 bits), Expect = 4.4e-60, Sum P(4) = 4.4e-60
Identities = 41/100 (41%), Positives = 55/100 (55%)
Query: 383 PPFVTLEGGLKIPESIFNN----LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVL 438
P FV L+ K P I + L DYQ G+ WL C+ I+ DEMGLGKTIQ +
Sbjct: 457 PRFVALK---KQPSYIGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTI 513
Query: 439 SFLGAL-HFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFH 477
SFL L H +Y P ++V P++ L W+RE + W P +
Sbjct: 514 SFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQMN 553
Score = 52 (23.4 bits), Expect = 4.4e-60, Sum P(4) = 4.4e-60
Identities = 31/147 (21%), Positives = 61/147 (41%)
Query: 53 SESIDPSSTSQEKLYNKLR---AVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGR 109
S+S S TS+EK + + A E + ++ ++R + + ++ G
Sbjct: 59 SQSESESDTSREKKQVQAKPPKADGSEFWKSSPSILAVQRSAVLKKQQQQQKAASSDSGS 118
Query: 110 EDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEH-DKFIQD 168
E++ S+ + S +D + + + K K Q+ S G S+ E DK +
Sbjct: 119 EEDSSSSEDSADDSSSE-----TKKKKHKDEDWQMSGSGSVSGTGSDSESEEDGDKSSCE 173
Query: 169 LVKEEHRPKRKSKEAQKPGKDRSKQQK 195
+ ++ PK K K + P + + K K
Sbjct: 174 ESESDYEPKNKVKSRKPPSRIKPKSGK 200
Score = 49 (22.3 bits), Expect = 4.4e-60, Sum P(4) = 4.4e-60
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 1118 ARIRGNQEN--AVGAGLERQFEVASSSANVARFADTRTSRSSKNASDVQPEILIRQI 1172
A R N+ VG L QF+VA+ S + R+S+N ++ PE R+I
Sbjct: 995 AETRENEPGPLTVGDELLSQFKVANFSNMDEDDIELEPERNSRNWEEIIPESQRRRI 1051
Score = 46 (21.3 bits), Expect = 1.8e-46, Sum P(3) = 1.8e-46
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 491 RKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKK 523
++++A SSD+ ++ + S D + SS KK
Sbjct: 107 QQQKAASSDSGSEEDSSSSEDSADDSSSETKKK 139
Score = 42 (19.8 bits), Expect = 2.4e-59, Sum P(4) = 2.4e-59
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 971 EIGS-SRRKGKEKVDNIGDEVDEETNILKS 999
EI S S + EK D DE D + N +KS
Sbjct: 1347 EIKSDSSPQPSEKSDEDDDEEDNKVNEIKS 1376
Score = 41 (19.5 bits), Expect = 6.0e-46, Sum P(3) = 6.0e-46
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 484 SAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWD 525
SA G SSD + GS DS+ S++ + D
Sbjct: 25 SASGSGSGSSSGSSSDGSSSQSGSSDSESGSESGSQSESESD 66
Score = 40 (19.1 bits), Expect = 7.6e-46, Sum P(3) = 7.6e-46
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 483 DSAQDLGF--RKKRAKSSDTDNDGEGS 507
DSA D +KK+ K D G GS
Sbjct: 127 DSADDSSSETKKKKHKDEDWQMSGSGS 153
Score = 40 (19.1 bits), Expect = 4.4e-07, Sum P(3) = 4.4e-07
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 1106 SAGKVLSSSELLARIR--GNQENAVGAGLERQFEVASSSANVARFADTRTSRSSK 1158
S+GK++ +LL R+R GN+ + + + R ++ + +F R S K
Sbjct: 782 SSGKLILLDKLLIRLRERGNRV-LIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 835
Score = 39 (18.8 bits), Expect = 9.9e-59, Sum P(4) = 9.9e-59
Identities = 22/105 (20%), Positives = 37/105 (35%)
Query: 91 STKEDNDIDDGDSTEQDGRED-EKSAVQASPNDM-------TLQHALTADRLKSLKKTKA 142
S+ ++ + G +E + EK VQA P + L R LKK +
Sbjct: 48 SSDSESGSESGSQSESESDTSREKKQVQAKPPKADGSEFWKSSPSILAVQRSAVLKKQQQ 107
Query: 143 QLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPG 187
Q ++ + G + D E + K K ++ Q G
Sbjct: 108 Q--QKAASSDSGSEEDSSSSEDSADDSSSETKKKKHKDEDWQMSG 150
Score = 39 (18.8 bits), Expect = 4.9e-45, Sum P(4) = 4.9e-45
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 498 SDTDNDGEGSH----DSDYE--GNLSSRNP 521
S+++ DG+ S +SDYE + SR P
Sbjct: 161 SESEEDGDKSSCEESESDYEPKNKVKSRKP 190
Score = 37 (18.1 bits), Expect = 1.6e-45, Sum P(3) = 1.6e-45
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 497 SSDTDNDGEGSHDSDYEGNLSSRNPKK 523
SSD+++ E S+ E + +SR K+
Sbjct: 48 SSDSESGSESGSQSESESD-TSREKKQ 73
>SGD|S000006003 [details] [associations]
symbol:MOT1 "Essential protein involved in regulation of
transcription" species:4932 "Saccharomyces cerevisiae" [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0017025 "TBP-class protein binding"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IDA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;IDA] [GO:0045898 "regulation of RNA
polymerase II transcriptional preinitiation complex assembly"
evidence=IMP] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SGD:S000006003 GO:GO:0005739 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0016887 EMBL:BK006949
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:U41849 GO:GO:0000228 GO:GO:0006364
HOGENOM:HOG000210415 KO:K15192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GO:GO:0042790 GO:GO:0045898 OrthoDB:EOG44XNQZ
EMBL:M83224 PIR:S22775 RefSeq:NP_015243.1 ProteinModelPortal:P32333
SMR:P32333 DIP:DIP-2418N IntAct:P32333 MINT:MINT-623118
STRING:P32333 PaxDb:P32333 PeptideAtlas:P32333 PRIDE:P32333
EnsemblFungi:YPL082C GeneID:856023 KEGG:sce:YPL082C CYGD:YPL082c
GeneTree:ENSGT00630000089754 NextBio:980935 Genevestigator:P32333
GermOnline:YPL082C Uniprot:P32333
Length = 1867
Score = 353 (129.3 bits), Expect = 4.5e-60, Sum P(4) = 4.5e-60
Identities = 75/217 (34%), Positives = 118/217 (54%)
Query: 534 SESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTG 593
S++ +++T+Y+ R L E+ Y VLDEGH I+N ++++ K++ HR+I+TG
Sbjct: 1378 SDADIIVTSYDVARNDLAVLNKTEYNYCVLDEGHIIKNSQSKLAKAVKEITANHRLILTG 1437
Query: 594 APIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLR 653
PIQN + ELWSLFDF+ PG LG +F+ FA PI + S + L
Sbjct: 1438 TPIQNNVLELWSLFDFLMPGFLGTEKMFQERFAKPIAASRNSKTSSKEQEAGVLALEALH 1497
Query: 654 DLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAF------LASSEVE--QIL 705
++P++LRR+K DV + LP K +C L + Q+ +Y F + ++E +I
Sbjct: 1498 KQVLPFMLRRLKEDVLSDLPPKIIQDYYCELGDLQKQLYMDFTKKQKNVVEKDIENSEIA 1557
Query: 706 DGSRNSLYGIDVMRKICNHPDLL---EREQSCQIPDY 739
DG ++ + MRK+CNHP L+ Q Q+ DY
Sbjct: 1558 DGKQHIFQALQYMRKLCNHPALVLSPNHPQLAQVQDY 1594
Score = 306 (112.8 bits), Expect = 4.5e-60, Sum P(4) = 4.5e-60
Identities = 68/190 (35%), Positives = 105/190 (55%)
Query: 763 HRVLLFAQTQQMLDILESFLIAS---GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFIL 819
HR L+F Q + MLD++E+ L Y R+DG + R ++ ++N + +L
Sbjct: 1647 HRALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDCLLL 1706
Query: 820 TTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKV 879
TTKVGGLG NLTGA+ VI + DWNP D+QA +RA RIGQK+ V VYR+IT+GT+EEK+
Sbjct: 1707 TTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKI 1766
Query: 880 YHRQIYKHFLTNKILKNPQQRRF--FKARNMKDLFTL-------NDDGNGGSTETSNIFS 930
Q +K + + ++ N Q + DLF N++ N G ++ +
Sbjct: 1767 MGLQKFKMNIASTVV-NQQNSGLASMDTHQLLDLFDPDNVTSQDNEEKNNGDSQAAKGME 1825
Query: 931 QLSEDVNVVG 940
++ + + G
Sbjct: 1826 DIANETGLTG 1835
Score = 124 (48.7 bits), Expect = 4.5e-60, Sum P(4) = 4.5e-60
Identities = 31/98 (31%), Positives = 51/98 (52%)
Query: 393 KIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM--Y 450
K+P +I L YQ+ GV WL L+ GI+ D+MGLGKT+Q + + + + Y
Sbjct: 1263 KLPIAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRKEDY 1322
Query: 451 K----------PSIVVCPVTLLRQWKREAEKWYPSFHV 478
+ PS+++CP +L W+ E +++ P V
Sbjct: 1323 EKTRSVESRALPSLIICPPSLTGHWENEFDQYAPFLKV 1360
Score = 45 (20.9 bits), Expect = 3.5e-20, Sum P(3) = 3.5e-20
Identities = 9/27 (33%), Positives = 18/27 (66%)
Query: 705 LDGSRNSLYG--IDVMRKICNHPDLLE 729
LD +S G +D++ K+C+H ++L+
Sbjct: 502 LDDDISSSVGSIMDLLAKLCDHQEVLD 528
Score = 38 (18.4 bits), Expect = 4.5e-60, Sum P(4) = 4.5e-60
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 261 RSNDPFSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPT 302
+ ++ +A D L MSE AQ + L+ + L ++ GP+
Sbjct: 1011 KESNSIAAQDDINLAKMSEEAQLKRKGGLITLKILFEVLGPS 1052
Score = 38 (18.4 bits), Expect = 2.5e-52, Sum P(3) = 2.5e-52
Identities = 20/70 (28%), Positives = 31/70 (44%)
Query: 483 DSAQ-DLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLIT 541
D+AQ L K T N+ D+ +LSS + W L N +L+S LL +
Sbjct: 96 DNAQVKLEHEMKIKLEEATQNNQLNLLQEDH--HLSSLSD--WKL--NEILKSGKVLLAS 149
Query: 542 TYEQLRLLGE 551
+ +LG+
Sbjct: 150 SMNDYNVLGK 159
Score = 38 (18.4 bits), Expect = 2.4e-32, Sum P(4) = 2.4e-32
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 985 NIGDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQ 1032
NI V + N + D + + + D + + +EEK + QA++
Sbjct: 1775 NIASTVVNQQNSGLASMDTHQLLDLFDPDNVTSQDNEEKNNGDSQAAK 1822
>UNIPROTKB|D4A4J2 [details] [associations]
symbol:Smarca2 "Protein Smarca2" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
Pfam:PF08880 PROSITE:PS51194 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
IPI:IPI00777186 Ensembl:ENSRNOT00000016283 ArrayExpress:D4A4J2
Uniprot:D4A4J2
Length = 1506
Score = 336 (123.3 bits), Expect = 5.7e-60, Sum P(4) = 5.7e-60
Identities = 75/200 (37%), Positives = 116/200 (58%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQS-CQIPDYGNP--------ERSEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S + Y N S K +++ ++L
Sbjct: 1008 GAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILP 1067
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+ HRVLLF Q ++ I+E + + Y R+DG T + R AL+ ++N S F
Sbjct: 1068 KLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYF 1127
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ V+IFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 1128 IFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1187
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 1188 EEKILAAAKYKLNVDQKVIQ 1207
Score = 285 (105.4 bits), Expect = 5.7e-60, Sum P(4) = 5.7e-60
Identities = 72/213 (33%), Positives = 112/213 (52%)
Query: 532 LRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRI 589
LRS + +L+TTYE + L + W Y ++DEGHR++N + +++ V RI
Sbjct: 825 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRI 884
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QNKL ELW+L +F+ P FE F P + G L
Sbjct: 885 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--ERVDLNEEETILII 942
Query: 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------SEVE 702
L ++ P+LLRR+K +V +QLP+K E+V+ C ++ Q+ +YR A SE +
Sbjct: 943 RRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKD 1002
Query: 703 QILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
+ G +L I +RKICNHP + + E+S
Sbjct: 1003 KKGKGGAKTLMNTIMQLRKICNHPYMFQHIEES 1035
Score = 147 (56.8 bits), Expect = 5.7e-60, Sum P(4) = 5.7e-60
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 398 IFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVV 456
I L YQ G++W+ L+ GI+ DEMGLGKTIQ ++ + L + P +++
Sbjct: 727 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 786
Query: 457 CPVTLLRQWKREAEKWYPS 475
P++ L W E +KW PS
Sbjct: 787 VPLSTLSNWTYEFDKWAPS 805
Score = 52 (23.4 bits), Expect = 1.0e-59, Sum P(5) = 1.0e-59
Identities = 27/117 (23%), Positives = 47/117 (40%)
Query: 49 PHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRR-VSTKEDNDIDDGDSTEQD 107
P K + +DP QE+ Y + I + S L + TK ++
Sbjct: 337 PIQKPQGLDPVEILQEREYRLQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQ 396
Query: 108 GREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDK 164
R+ + V D TL+ AL + K+ K++K Q ++E K + IE ++
Sbjct: 397 -RQLRQEVVACMRRDTTLETALNS---KAYKRSKRQTLREARMTEKLEKQQKIEQER 449
Score = 48 (22.0 bits), Expect = 5.7e-60, Sum P(4) = 5.7e-60
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 88 RRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPN 121
R S + ++D ++ D E+ R++ + + PN
Sbjct: 639 RSDSEESESDYEEEDEEEESSRQETEEKILLDPN 672
Score = 42 (19.8 bits), Expect = 2.4e-59, Sum P(4) = 2.4e-59
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 133 RLKSLKKTK--AQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQK 185
+L KK + A L+++ + +T+ EH + KE+ + +R+ K+A++
Sbjct: 523 KLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQ--AQAAKEKKKRRRRRKKAEE 575
Score = 41 (19.5 bits), Expect = 3.0e-59, Sum P(4) = 3.0e-59
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 90 VSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTL 125
V+ + D++ + D E+D E+E+S+ Q + + L
Sbjct: 636 VAPRSDSEESESDYEEED--EEEESSRQETEEKILL 669
Score = 40 (19.1 bits), Expect = 1.0e-59, Sum P(5) = 1.0e-59
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 163 DKFIQDLVKE--EHRPKRKSKEAQKPGKDRSKQQK 195
D+++ +L EH+ + +KE +K + R K ++
Sbjct: 541 DEYVANLTNLVWEHKQAQAAKEKKKRRRRRKKAEE 575
Score = 37 (18.1 bits), Expect = 7.9e-59, Sum P(4) = 7.9e-59
Identities = 5/26 (19%), Positives = 18/26 (69%)
Query: 171 KEEHRPKRKSKEAQKPGKDRSKQQKT 196
+++ + +++ ++ Q+P + + QQ+T
Sbjct: 219 QQQQQQQQQQQQQQQPQQPQQPQQQT 244
>UNIPROTKB|F1SCA0 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:CT868714
EMBL:CT954286 Ensembl:ENSSSCT00000011455 Uniprot:F1SCA0
Length = 1850
Score = 355 (130.0 bits), Expect = 6.7e-60, Sum P(4) = 6.7e-60
Identities = 73/168 (43%), Positives = 102/168 (60%)
Query: 763 HRVLLFAQTQQMLDILESFLIAS---GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFIL 819
HR+L+F Q + MLDI+E L+ Y R+DG P QR +++ +NN + + +L
Sbjct: 1646 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLL 1705
Query: 820 TTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKV 879
TT VGGLG NLTGA+ V+ + DWNP D+QA +RA RIGQK+ V VYRLITRGT+EEK+
Sbjct: 1706 TTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKI 1765
Query: 880 YHRQIYKHFLTNKILKNPQQR-RFFKARNMKDLFTLNDDGNGGSTETS 926
Q +K + N ++ + + DLFTL+ DG +TS
Sbjct: 1766 MGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDGKAEKADTS 1813
Score = 278 (102.9 bits), Expect = 6.7e-60, Sum P(4) = 6.7e-60
Identities = 60/161 (37%), Positives = 89/161 (55%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
L++ +Y+ +R + ++++ Y +LDEGH I+N ++S KQL +RII++G PIQ
Sbjct: 1379 LIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQ 1438
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N + ELWSLFDF+ PG LG F A + PI A +S + L ++
Sbjct: 1439 NNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVL 1498
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS 698
P+LLRRMK DV LP K +C+L+ Q +Y F S
Sbjct: 1499 PFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKS 1539
Score = 128 (50.1 bits), Expect = 6.7e-60, Sum P(4) = 6.7e-60
Identities = 37/102 (36%), Positives = 50/102 (49%)
Query: 393 KIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA--LHFSNMY 450
+IP I L YQ+ GV WL L+ + GI+ D+MGLGKT+Q + L H + Y
Sbjct: 1258 EIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEY 1317
Query: 451 K----------PSIVVCPVTLLRQWKREAEKWYPSFHVELLH 482
PS+VVCP TL W E K+ ++ LH
Sbjct: 1318 ARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLH 1359
Score = 58 (25.5 bits), Expect = 6.7e-60, Sum P(4) = 6.7e-60
Identities = 24/80 (30%), Positives = 37/80 (46%)
Query: 698 SSEVEQI-LDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLK 756
S E E+ L + + + +RK+CNHP L+ Q P++ + +EK+ V L
Sbjct: 1555 SEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQH---PEFKST--TEKLAVQNSSLH 1609
Query: 757 VWKDQGHRVLLFAQTQQMLD 776
D H L A Q +LD
Sbjct: 1610 ---DIQHAPKLSALKQLLLD 1626
Score = 37 (18.1 bits), Expect = 6.1e-26, Sum P(2) = 6.1e-26
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 701 VEQILDGSRNSLYGIDV 717
+EQ+LDG + Y I V
Sbjct: 1245 LEQLLDGKKLENYEIPV 1261
>UNIPROTKB|E1C2F7 [details] [associations]
symbol:E1C2F7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IEA] [GO:0008285
"negative regulation of cell proliferation" evidence=IEA]
[GO:0016514 "SWI/SNF complex" evidence=IEA] [GO:0030308 "negative
regulation of cell growth" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0044212
"transcription regulatory region DNA binding" evidence=IEA]
[GO:0045111 "intermediate filament cytoskeleton" evidence=IEA]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565
"nBAF complex" evidence=IEA] [GO:0071778 "WINAC complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0045892 GO:GO:0008285 GO:GO:0030308 GO:GO:0045944
GO:GO:0044212 GO:GO:0045111 GO:GO:0000790 GO:GO:0071564
GO:GO:0016514 GO:GO:0071565 GO:GO:0004386 GO:GO:0001105
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0071778
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OMA:PQEGMHQ EMBL:AADN02068434 EMBL:AADN02068435 EMBL:AADN02068436
EMBL:AADN02068437 EMBL:AADN02068438 EMBL:AADN02068439
EMBL:AADN02068440 EMBL:AADN02068441 IPI:IPI00583413
Ensembl:ENSGALT00000016528 Uniprot:E1C2F7
Length = 1546
Score = 337 (123.7 bits), Expect = 7.4e-60, Sum P(5) = 7.4e-60
Identities = 76/200 (38%), Positives = 116/200 (58%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQS-CQIPDYGNP--------ERSEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S + Y N S K +++ ++L
Sbjct: 975 GAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILP 1034
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+ HRVLLF Q ++ I+E + + Y R+DG T + R AL+ ++N S F
Sbjct: 1035 KLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYF 1094
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 1095 IFLLSTRAGGLGLNLQAADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1154
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 1155 EEKILAAAKYKLNVDQKVIQ 1174
Score = 285 (105.4 bits), Expect = 7.4e-60, Sum P(5) = 7.4e-60
Identities = 72/213 (33%), Positives = 112/213 (52%)
Query: 532 LRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRI 589
LRS + +L+TTYE + L + W Y ++DEGHR++N + +++ V RI
Sbjct: 792 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRI 851
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QNKL ELW+L +F+ P FE F P + G L
Sbjct: 852 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--ERVDLNEEETILII 909
Query: 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------SEVE 702
L ++ P+LLRR+K +V +QLP+K E+V+ C ++ Q+ +YR A SE +
Sbjct: 910 RRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKD 969
Query: 703 QILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
+ G +L I +RKICNHP + + E+S
Sbjct: 970 KKGKGGAKTLMNTIMQLRKICNHPYMFQHIEES 1002
Score = 147 (56.8 bits), Expect = 7.4e-60, Sum P(5) = 7.4e-60
Identities = 29/79 (36%), Positives = 44/79 (55%)
Query: 398 IFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVV 456
I L YQ G++W+ L+ GI+ DEMGLGKTIQ ++ + L + P +++
Sbjct: 694 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 753
Query: 457 CPVTLLRQWKREAEKWYPS 475
P++ L W E +KW PS
Sbjct: 754 VPLSTLSNWTYEFDKWAPS 772
Score = 47 (21.6 bits), Expect = 7.4e-60, Sum P(5) = 7.4e-60
Identities = 20/100 (20%), Positives = 44/100 (44%)
Query: 52 KSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGRED 111
+S+S D S + E+ ++ + E + VS K+ I + + D
Sbjct: 605 RSDSEDESGSEYEEEDDEEESSRLEADEKILLDPNSEEVSEKDAKQIIETAKQDVDDEYS 664
Query: 112 EKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHF 151
+ + + S + T+ HA+T +R++ K++ + L H+
Sbjct: 665 MQYSARGSQSYYTVAHAIT-ERVE--KQSSLLINGTLKHY 701
Score = 46 (21.3 bits), Expect = 7.4e-60, Sum P(5) = 7.4e-60
Identities = 14/75 (18%), Positives = 38/75 (50%)
Query: 987 GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRM 1046
G ++ E++ +L+S+F + A ++ ++D+E +E + ++ +++++
Sbjct: 1441 GSQIYEDSIVLQSVFKSARQKIAKEEESEDESNDDE----DEDDEEESESESKSVKVKIK 1496
Query: 1047 LRSRDDISVPTWTGK 1061
L +D+ S GK
Sbjct: 1497 LNKKDEKSREKGKGK 1511
Score = 46 (21.3 bits), Expect = 9.4e-60, Sum P(5) = 9.4e-60
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 90 VSTKEDNDIDDGDSTEQDGREDEKSAVQA 118
V+ + D++ + G E++ E+E S ++A
Sbjct: 602 VAPRSDSEDESGSEYEEEDDEEESSRLEA 630
Score = 43 (20.2 bits), Expect = 1.9e-59, Sum P(5) = 1.9e-59
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 133 RLKSLKKTK--AQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQK 185
+L KK + A L+++ + +T+ EH + KE+ + +R+ K+A++
Sbjct: 489 KLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQ--AQAAKEKKKRRRRKKKAEE 541
Score = 40 (19.1 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 491 RKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPK-KWDLLINR 530
R+K AK +++++ D D E S + K + +N+
Sbjct: 1459 RQKIAKEEESEDESNDDEDEDDEEESESESKSVKVKIKLNK 1499
Score = 37 (18.1 bits), Expect = 8.0e-59, Sum P(5) = 8.0e-59
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 163 DKFIQDLVKE--EHRPKRKSKEAQKPGKDRSKQQK 195
D+++ +L EH+ + +KE +K + + K ++
Sbjct: 507 DEYVANLTNLVWEHKQAQAAKEKKKRRRRKKKAEE 541
Score = 37 (18.1 bits), Expect = 0.00054, Sum P(3) = 0.00054
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 491 RKKRAKSSDTDNDGEGSHDSD 511
R+ RAK+ +D + D D
Sbjct: 1513 RQSRAKAKPVVSDDDSDEDQD 1533
>POMBASE|SPAC29B12.01 [details] [associations]
symbol:ino80 "SNF2 family helicase Ino80" species:4896
"Schizosaccharomyces pombe" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=ISO] [GO:0006338 "chromatin remodeling" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IDA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 PomBase:SPAC29B12.01 GO:GO:0005524
EMBL:CU329670 GO:GO:0006355 GenomeReviews:CU329670_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006351 GO:GO:0016568 GO:GO:0031011 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043140 KO:K11665 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
RefSeq:NP_001018299.1 ProteinModelPortal:O14148 STRING:O14148
EnsemblFungi:SPAC29B12.01.1 GeneID:3361566 KEGG:spo:SPAC29B12.01
OMA:INDHNSA NextBio:20811604 Uniprot:O14148
Length = 1604
Score = 345 (126.5 bits), Expect = 9.1e-60, Sum P(4) = 9.1e-60
Identities = 66/156 (42%), Positives = 101/156 (64%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K+ + ++L K HRVL++ Q +M+D++E +L Y+Y R+DG + + QR +
Sbjct: 1428 SGKLSKLDKLLVELKANDHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKISQRRDM 1487
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+ E+ ++F+F+L+T+ GGLG NLT A+ VI +D DWNPS D QA +RA RIGQ++ V
Sbjct: 1488 VTEWQTRPELFVFLLSTRAGGLGINLTAADTVIFYDSDWNPSIDSQAMDRAHRIGQQKQV 1547
Query: 865 TVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQR 900
TVYR ITRGTIEE++ R K + ++ + R
Sbjct: 1548 TVYRFITRGTIEERIVIRAKEKEEVQKVVISGGETR 1583
Score = 257 (95.5 bits), Expect = 9.1e-60, Sum P(4) = 9.1e-60
Identities = 61/202 (30%), Positives = 108/202 (53%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
+++T+Y+ + L + V+W Y +LDE I++ ++ + +R+++TG PIQ
Sbjct: 951 VVVTSYQLVVLDAQYFQSVKWQYMILDEAQAIKSSSSSRWKSLLAFKCRNRLLLTGTPIQ 1010
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N + ELW+L F+ P F F+ I +N L R ++L+
Sbjct: 1011 NTMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAQSNTQ-LNEQQLKRLHMILK---- 1065
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD----GSRNSLY 713
P++LRR+K +V ++L +K E ++C LT+ Q+ +Y+A + ++L+ G +++
Sbjct: 1066 PFMLRRVKKNVQSELGEKIEKEVYCDLTQRQKILYQALRRQISIAELLEKAILGGDDTVA 1125
Query: 714 GID--VM--RKICNHPDLLERE 731
I VM RK+CNHPDL ERE
Sbjct: 1126 SIMNLVMQFRKVCNHPDLFERE 1147
Score = 158 (60.7 bits), Expect = 9.1e-60, Sum P(4) = 9.1e-60
Identities = 32/86 (37%), Positives = 52/86 (60%)
Query: 392 LKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQ---VLSFLGALHFSN 448
+K P+ + L +YQ G+ WL L+ Q GI+ DEMGLGKT+Q V+++L H N
Sbjct: 832 VKQPKMLMCKLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVMAYLAETH--N 889
Query: 449 MYKPSIVVCPVTLLRQWKREAEKWYP 474
++ P +V+ P + L W++E ++ P
Sbjct: 890 IWGPFLVIAPASTLHNWQQEITRFVP 915
Score = 55 (24.4 bits), Expect = 9.1e-60, Sum P(4) = 9.1e-60
Identities = 34/135 (25%), Positives = 54/135 (40%)
Query: 64 EKLYNKLRAVEFEIGAVASTVDHLRR-VSTKEDNDIDDGDSTEQDGREDEKSAVQASPN- 121
E YNKL A E+ + +R V+ E I + ++ RE++ +Q S +
Sbjct: 367 ENRYNKLHASEYNHHHDWAVRQAIREEVAAVEAAKIRADEEKKKKEREEQVRLLQESADK 426
Query: 122 DMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQDL-VKEEHRPKRKS 180
D + A TA K L +LS K S+ E++ VK E + + K+
Sbjct: 427 DAEMNEASTATSENEDLKDDLSLA-DLSS-KKTANSQATENNNTPSKAKVKAESKVRSKA 484
Query: 181 KEAQKPGKDRSKQQK 195
K + K S K
Sbjct: 485 KSDKSRAKLSSDTNK 499
Score = 50 (22.7 bits), Expect = 3.0e-59, Sum P(4) = 3.0e-59
Identities = 33/109 (30%), Positives = 48/109 (44%)
Query: 91 STKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSH 150
+T E + GDSTE G K +AS D T +A TA KKT L +++
Sbjct: 575 TTAEGKEKLSGDSTET-GNSTNK---EASTED-TKANA-TASAPNKKKKTVETLQQQVI- 627
Query: 151 FPKGITSKGIEHD-KFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQ-KTV 197
K I K I K IQ + +R K +Q G++ + Q +T+
Sbjct: 628 --KEIARKEIPRVYKIIQQ--NQYNRSTNARKTSQLCGREARRWQFRTI 672
Score = 47 (21.6 bits), Expect = 3.1e-48, Sum P(4) = 3.1e-48
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 492 KKRAK-SSDTDNDGEGSHDSD 511
K RAK SSDT+ D E + ++D
Sbjct: 488 KSRAKLSSDTNKDSEKNDNND 508
Score = 39 (18.8 bits), Expect = 4.2e-58, Sum P(4) = 4.2e-58
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 249 SNKQNVPDEQEARSNDPFSASVDRALRMMSEAAQARPSTKL 289
S+K+ + +N P A V ++ S+A + KL
Sbjct: 453 SSKKTANSQATENNNTPSKAKVKAESKVRSKAKSDKSRAKL 493
Score = 38 (18.4 bits), Expect = 5.3e-58, Sum P(4) = 5.3e-58
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 350 TRLEENEDSRDSLDMS 365
T ENED +D L ++
Sbjct: 435 TATSENEDLKDDLSLA 450
>UNIPROTKB|F1N507 [details] [associations]
symbol:Bt.112326 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:DAAA02058811
EMBL:DAAA02058810 IPI:IPI00685441 Ensembl:ENSBTAT00000021438
Uniprot:F1N507
Length = 1845
Score = 348 (127.6 bits), Expect = 1.2e-59, Sum P(4) = 1.2e-59
Identities = 72/168 (42%), Positives = 101/168 (60%)
Query: 763 HRVLLFAQTQQMLDILESFLIAS---GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFIL 819
HR+L+F Q + MLDI+E L+ Y R+DG P QR +++ +NN + + +L
Sbjct: 1641 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLL 1700
Query: 820 TTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKV 879
TT VGGLG NLTGA+ V+ + DWNP D+QA +RA RIGQ + V VYRLITRGT+EEK+
Sbjct: 1701 TTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQVKVVNVYRLITRGTLEEKI 1760
Query: 880 YHRQIYKHFLTNKILKNPQQR-RFFKARNMKDLFTLNDDGNGGSTETS 926
Q +K + N ++ + + DLFTL+ DG +TS
Sbjct: 1761 MGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDGKAEKADTS 1808
Score = 277 (102.6 bits), Expect = 1.2e-59, Sum P(4) = 1.2e-59
Identities = 60/161 (37%), Positives = 89/161 (55%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
L++ +Y+ +R + ++++ Y +LDEGH I+N ++S KQL +RII++G PIQ
Sbjct: 1374 LVVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQ 1433
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N + ELWSLFDF+ PG LG F A + PI A +S + L ++
Sbjct: 1434 NNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVL 1493
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS 698
P+LLRRMK DV LP K +C+L+ Q +Y F S
Sbjct: 1494 PFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKS 1534
Score = 132 (51.5 bits), Expect = 1.2e-59, Sum P(4) = 1.2e-59
Identities = 38/102 (37%), Positives = 50/102 (49%)
Query: 393 KIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA--LHFSNMY 450
KIP I L YQ+ GV WL L+ + GI+ D+MGLGKT+Q + L H + Y
Sbjct: 1253 KIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEY 1312
Query: 451 K----------PSIVVCPVTLLRQWKREAEKWYPSFHVELLH 482
PS+VVCP TL W E K+ ++ LH
Sbjct: 1313 ARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLH 1354
Score = 60 (26.2 bits), Expect = 1.2e-59, Sum P(4) = 1.2e-59
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 698 SSEVEQI-LDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLK 756
S E E+ L + + + +RK+CNHP L+ Q P++ N +EK+ AQ
Sbjct: 1550 SEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQH---PEFKNT--TEKL--AAQNSS 1602
Query: 757 VWKDQGHRVLLFAQTQQMLD 776
+ D H L A Q +LD
Sbjct: 1603 L-HDIQHAPKLSALKQLLLD 1621
Score = 52 (23.4 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 1131 GLERQFEVASSSANVARFADTRTSRSSKNASDVQPEILIRQICTFMQQR 1179
G ERQF A + D R+S + A + + L RQ+ F+ +R
Sbjct: 1452 GTERQF-AARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRR 1499
Score = 37 (18.1 bits), Expect = 3.4e-25, Sum P(2) = 3.4e-25
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 701 VEQILDGSRNSLYGIDV 717
+EQ+LDG + Y I V
Sbjct: 1240 LEQLLDGKKLENYKIPV 1256
>UNIPROTKB|F1MGF2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:DAAA02021391
EMBL:DAAA02021392 IPI:IPI00717393 UniGene:Bt.105262
Ensembl:ENSBTAT00000034967 NextBio:20866990 Uniprot:F1MGF2
Length = 1810
Score = 536 (193.7 bits), Expect = 1.3e-59, Sum P(4) = 1.3e-59
Identities = 134/399 (33%), Positives = 222/399 (55%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHR 568
Y G+++SRN + + + + R + +L+TTYE L L +K L + W + +DE HR
Sbjct: 573 YLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEIL--LKDKAFLGGLNWAFIGVDEAHR 630
Query: 569 IRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP 628
++N ++ + ++ HR+++TG P+QN L ELWSL F+ P K FE E
Sbjct: 631 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKG 690
Query: 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQ 688
G YA+ L + P+LLRR+K DV LP K E +L ++ Q
Sbjct: 691 REYG-YAS---------------LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ 734
Query: 689 RAVYRAFLASSEVEQILDGSRNSLYG-IDVM---RKICNHPDLLEREQSCQIPDYGNPE- 743
+ Y+ ++ + + + GS+ S G +++M +K CNH L++ + + Y E
Sbjct: 735 KQYYK-WILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEF--YNKQEA 791
Query: 744 -----RSE-KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTP 797
RS K+ ++ ++L +++G+RVL+F+Q +MLDIL +L + ++R+DG
Sbjct: 792 LQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 851
Query: 798 VKQRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAW 856
+ R +D +N S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA
Sbjct: 852 GELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAH 911
Query: 857 RIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
RIGQK+ V +YRL+T+G++EE + R K L + +++
Sbjct: 912 RIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQ 950
Score = 165 (63.1 bits), Expect = 1.3e-59, Sum P(4) = 1.3e-59
Identities = 40/95 (42%), Positives = 53/95 (55%)
Query: 383 PPFVTLEGGLKIPESIFNN----LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVL 438
P FV L+ K P I + L DYQ G+ WL C+ I+ DEMGLGKTIQ +
Sbjct: 473 PRFVALK---KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTI 529
Query: 439 SFLGAL-HFSNMYKPSIVVCPVTLLRQWKREAEKW 472
SFL L H +Y P ++V P++ L W+RE + W
Sbjct: 530 SFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTW 564
Score = 53 (23.7 bits), Expect = 1.3e-59, Sum P(4) = 1.3e-59
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 161 EHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTV 197
E DK D + ++ PK K K + + +SK K +
Sbjct: 167 ERDKSSCDETESDYEPKNKVKSRKPQNRSKSKNGKKI 203
Score = 51 (23.0 bits), Expect = 1.3e-59, Sum P(4) = 1.3e-59
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 1115 ELLARIRGNQENA----VGAGLERQFEVASSSANVARFADTRTSRSSKNASDVQPE 1166
E+L R ++ A VG L QF+VA+ S + R+SKN ++ PE
Sbjct: 1006 EILKRAETHENEAGPLTVGDELLSQFKVANFSNMDEDDIELEPERNSKNWEEIIPE 1061
Score = 48 (22.0 bits), Expect = 4.2e-59, Sum P(4) = 4.2e-59
Identities = 23/110 (20%), Positives = 39/110 (35%)
Query: 91 STKEDNDIDDGDSTEQDGREDEKSAVQASPNDM-------TLQHALTADRLKSLKKTKAQ 143
S+ D+ + G +E + + VQA P + + L R LKK + Q
Sbjct: 49 SSDSDSGSESGSQSESESDNSRDNKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQ 108
Query: 144 LVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQ 193
+ + G + + + D E R K K ++ Q G Q
Sbjct: 109 QQQHQASSNSG-SEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQ 157
Score = 48 (22.0 bits), Expect = 1.8e-47, Sum P(4) = 1.8e-47
Identities = 8/24 (33%), Positives = 17/24 (70%)
Query: 488 LGFRKKRAKSSDTDNDGEGSHDSD 511
+G +K++ SS+ ++D E +D+D
Sbjct: 204 IGQKKRQIDSSEEEDDDEEEYDND 227
Score = 46 (21.3 bits), Expect = 6.8e-59, Sum P(4) = 6.8e-59
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 51 DKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQD 107
D S S D +S E K + ++++ S ++E+ D D TE D
Sbjct: 123 DSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEERDKSSCDETESD 179
Score = 45 (20.9 bits), Expect = 1.8e-46, Sum P(3) = 1.8e-46
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 484 SAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWD 525
SA G SSD + GS DSD S++ + D
Sbjct: 26 SASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESD 67
Score = 45 (20.9 bits), Expect = 5.4e-07, Sum P(3) = 5.4e-07
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 486 QDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSR 519
QD + R K D+ H S+ EG+L R
Sbjct: 1693 QDSRYYSDREKHRKLDDHRSRDHRSNLEGSLKDR 1726
Score = 40 (19.1 bits), Expect = 6.1e-46, Sum P(3) = 6.1e-46
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 497 SSDTDNDGEGSHDSDYEGNLSSRNPK 522
SSD+D+ E S+ E + +SR+ K
Sbjct: 49 SSDSDSGSESGSQSESESD-NSRDNK 73
Score = 40 (19.1 bits), Expect = 1.7e-06, Sum P(3) = 1.7e-06
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 1106 SAGKVLSSSELLARIR--GNQENAVGAGLERQFEVASSSANVARFADTRTSRSSK 1158
S+GK++ +LL R+R GN+ + + + R ++ + +F R S K
Sbjct: 798 SSGKLILLDKLLIRLRERGNRV-LIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 851
>UNIPROTKB|E2QWL4 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:AAEX03015408
Ensembl:ENSCAFT00000011817 NextBio:20860516 Uniprot:E2QWL4
Length = 1879
Score = 355 (130.0 bits), Expect = 1.3e-59, Sum P(5) = 1.3e-59
Identities = 73/168 (43%), Positives = 102/168 (60%)
Query: 763 HRVLLFAQTQQMLDILESFLIAS---GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFIL 819
HR+L+F Q + MLDI+E L+ Y R+DG P QR +++ +NN + + +L
Sbjct: 1645 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLL 1704
Query: 820 TTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKV 879
TT VGGLG NLTGA+ V+ + DWNP D+QA +RA RIGQK+ V VYRLITRGT+EEK+
Sbjct: 1705 TTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKI 1764
Query: 880 YHRQIYKHFLTNKILKNPQQR-RFFKARNMKDLFTLNDDGNGGSTETS 926
Q +K + N ++ + + DLFTL+ DG +TS
Sbjct: 1765 MGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDGKAEKADTS 1812
Score = 278 (102.9 bits), Expect = 1.3e-59, Sum P(5) = 1.3e-59
Identities = 60/161 (37%), Positives = 89/161 (55%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
L++ +Y+ +R + ++++ Y +LDEGH I+N ++S KQL +RII++G PIQ
Sbjct: 1378 LIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQ 1437
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N + ELWSLFDF+ PG LG F A + PI A +S + L ++
Sbjct: 1438 NNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVL 1497
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS 698
P+LLRRMK DV LP K +C+L+ Q +Y F S
Sbjct: 1498 PFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKS 1538
Score = 133 (51.9 bits), Expect = 1.3e-59, Sum P(5) = 1.3e-59
Identities = 38/102 (37%), Positives = 50/102 (49%)
Query: 393 KIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA--LHFSNMY 450
KIP I L YQ+ GV WL L+ + GI+ D+MGLGKT+Q + L H + Y
Sbjct: 1257 KIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEY 1316
Query: 451 K----------PSIVVCPVTLLRQWKREAEKWYPSFHVELLH 482
PS+VVCP TL W E K+ ++ LH
Sbjct: 1317 ARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSKEYLNPLH 1358
Score = 58 (25.5 bits), Expect = 1.3e-59, Sum P(5) = 1.3e-59
Identities = 24/80 (30%), Positives = 37/80 (46%)
Query: 698 SSEVEQI-LDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLK 756
S E E+ L + + + +RK+CNHP L+ Q P++ + +EK+ V L
Sbjct: 1554 SEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQH---PEFKST--TEKLAVQNSSLH 1608
Query: 757 VWKDQGHRVLLFAQTQQMLD 776
D H L A Q +LD
Sbjct: 1609 ---DIQHAPKLSALKQLLLD 1625
Score = 40 (19.1 bits), Expect = 1.3e-59, Sum P(5) = 1.3e-59
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 90 VSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTL-QHALTADRLKSLKKTKAQLVK-E 147
V T+ D G ++E+DG V +TL +H A + S + + VK +
Sbjct: 941 VPTQSGQDNSKGSNSEKDGMHH---TVTKHRGIITLYRHQKAAFAITSRRGPTPKAVKAQ 997
Query: 148 LSHFPKG 154
++ P G
Sbjct: 998 IADLPAG 1004
Score = 37 (18.1 bits), Expect = 8.8e-25, Sum P(3) = 8.8e-25
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 701 VEQILDGSRNSLYGIDV 717
+EQ+LDG + Y I V
Sbjct: 1244 LEQLLDGKKLENYKIPV 1260
>UNIPROTKB|E2RJ89 [details] [associations]
symbol:SMARCA4 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647
GeneTree:ENSGT00550000074659 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
CTD:6597 EMBL:AAEX03012414 RefSeq:XP_867683.1
Ensembl:ENSCAFT00000027907 GeneID:476710 KEGG:cfa:476710
OMA:HKPMESM Uniprot:E2RJ89
Length = 1614
Score = 331 (121.6 bits), Expect = 1.4e-59, Sum P(6) = 1.4e-59
Identities = 73/200 (36%), Positives = 115/200 (57%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQSCQ---------IPDYGNPERSEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S + S K +++ ++L
Sbjct: 1031 GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+ H+VLLF Q ++ I+E + G++Y R+DG T + R L+ +N S+ F
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 1150
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQ 1230
Score = 290 (107.1 bits), Expect = 1.4e-59, Sum P(6) = 1.4e-59
Identities = 72/215 (33%), Positives = 116/215 (53%)
Query: 532 LRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRI 589
LRS + +L+TTYE + L + W Y ++DEGHR++N + +++ V R+
Sbjct: 848 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 907
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QNKL ELW+L +F+ P FE F P + G + ++
Sbjct: 908 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG----EKVDLNEEETIL 963
Query: 650 VV--LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------SE 700
++ L ++ P+LLRR+K +V AQLP+K E+V+ C ++ QR +YR A SE
Sbjct: 964 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 1023
Query: 701 VEQILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
++ G +L I +RKICNHP + + E+S
Sbjct: 1024 KDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEES 1058
Score = 147 (56.8 bits), Expect = 1.4e-59, Sum P(6) = 1.4e-59
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L YQ G++WL L+ GI+ DEMGLGKTIQ ++ + L + P +++ P++
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLS 813
Query: 461 LLRQWKREAEKWYPS 475
L W E +KW PS
Sbjct: 814 TLSNWAYEFDKWAPS 828
Score = 51 (23.0 bits), Expect = 1.4e-59, Sum P(6) = 1.4e-59
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 244 QQPGPSNKQNVPDEQEARSNDPFSASVDR--ALRMMSEAAQ 282
+QP P+ N+P E++ + DP S V A ++ A Q
Sbjct: 672 EQPQPAQPPNLPVEEKKKIPDPDSDDVSEVDARHIIENAKQ 712
Score = 46 (21.3 bits), Expect = 1.4e-59, Sum P(6) = 1.4e-59
Identities = 31/135 (22%), Positives = 55/135 (40%)
Query: 49 PHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRR-VSTKEDNDIDDGDSTEQD 107
P K +DP QE+ Y + I + + L + TK ++
Sbjct: 354 PIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQ 413
Query: 108 GREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQ 167
R+ + V D L+ AL A K+ K++K Q ++E IT K +E Q
Sbjct: 414 -RQLRQEVVVCMRRDTALETALNA---KAYKRSKRQSLREAR-----ITEK-LEK----Q 459
Query: 168 DLVKEEHRPKRKSKE 182
+++E + ++K +E
Sbjct: 460 QKIEQERKRRQKHQE 474
Score = 42 (19.8 bits), Expect = 1.5e-47, Sum P(5) = 1.5e-47
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVC 457
G + GD + TI+ L L L+F + +VVC
Sbjct: 390 GSLAGD-LRTKATIE-LKALRLLNFQRQLRQEVVVC 423
Score = 42 (19.8 bits), Expect = 6.3e-05, Sum P(4) = 6.3e-05
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 491 RKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
R RAK +D+D E + D G+ S +
Sbjct: 1585 RGSRAKPVVSDDDSEEEQEEDRSGSGSEED 1614
Score = 41 (19.5 bits), Expect = 4.7e-59, Sum P(6) = 4.7e-59
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 50 HDKSESIDPSSTSQEKLYNKLRAVEFEIGAVA 81
H ES+ S + YN+++ + GA A
Sbjct: 73 HKPMESMHEKGMSDDPRYNQMKGMGMRSGAHA 104
Score = 41 (19.5 bits), Expect = 4.9e-58, Sum P(6) = 4.9e-58
Identities = 7/31 (22%), Positives = 18/31 (58%)
Query: 96 NDIDDGDSTEQDGREDEKSAVQASPNDMTLQ 126
+D ++ S E++ E+E+ A P ++ ++
Sbjct: 655 SDSEESGSEEEEEEEEEEQPQPAQPPNLPVE 685
Score = 40 (19.1 bits), Expect = 1.4e-59, Sum P(6) = 1.4e-59
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 987 GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEA-LRQSR 1045
G + E++ +L+S+F + D EE+ EE+ S+ R+ + ++ R
Sbjct: 1510 GSLIYEDSIVLQSVFTSVR-QKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGR 1568
Query: 1046 MLRSRD 1051
+++D
Sbjct: 1569 KEKAQD 1574
Score = 37 (18.1 bits), Expect = 2.9e-59, Sum P(6) = 2.9e-59
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 1016 MNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTW 1058
M A EE+ L + + +R EA R R ++ +P+W
Sbjct: 1272 MIARHEEEFDLFMRMD-LDRRREEARNPKRKPRLMEEDELPSW 1313
>ASPGD|ASPL0000027956 [details] [associations]
symbol:AN10677 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005819 "spindle"
evidence=IEA] [GO:0006311 "meiotic gene conversion" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 EMBL:BN001305 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:LSEYFAL
EnsemblFungi:CADANIAT00003558 Uniprot:C8VG87
Length = 833
Score = 358 (131.1 bits), Expect = 1.4e-59, Sum P(3) = 1.4e-59
Identities = 72/191 (37%), Positives = 118/191 (61%)
Query: 742 PERSEKMKVVAQVL-KVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQ 800
P S KM V+ ++L ++ +D +++L + Q LD+ E + Y R+DG VK+
Sbjct: 582 PWYSGKMMVLDRMLARIRQDTNDKIVLISNYTQTLDLFEKLCRSRAYGCLRLDGTMNVKK 641
Query: 801 RMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIG 859
R L+D++N+ + F+F+L++K GG G NL GANR+++FDPDWNP+ D QA R WR G
Sbjct: 642 RQKLVDKFNDPDGEEFVFLLSSKAGGCGLNLIGANRLVLFDPDWNPAADQQALARVWRDG 701
Query: 860 QKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLNDDG 918
QK+D VYR I G+IEEK++ RQ +K L++ ++ + + R F ++++LF
Sbjct: 702 QKKDCFVYRFIATGSIEEKIFQRQSHKQSLSSCVVDSAEDVERHFSLDSLRELFQFKP-- 759
Query: 919 NGGSTETSNIF 929
G +++T + F
Sbjct: 760 -GTTSDTHDTF 769
Score = 306 (112.8 bits), Expect = 1.4e-59, Sum P(3) = 1.4e-59
Identities = 70/209 (33%), Positives = 112/209 (53%)
Query: 522 KKWDLLINR-VLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVC 580
K+W + R ++R +LI +YE LR+ + L D G + DEGHR++N +
Sbjct: 346 KQWAISSGRSIVRP---VLIVSYETLRMYVDTLKDSPIGLLLCDEGHRLKNKESLTWTAL 402
Query: 581 KQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPL 640
L R+I++G PIQN LSE ++L +F P LG F F +PI G A +
Sbjct: 403 NSLNVQRRVILSGTPIQNDLSEYFALLNFANPDLLGSQNEFRKRFEIPILKGRDAAGTEE 462
Query: 641 QVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSE 700
L ++ +++RR ++ LP K EHV+FC+L++ Q +Y+ F+ S E
Sbjct: 463 DRKKGDERLAELSSIVNKFIIRRTNDILSKYLPVKYEHVVFCNLSQFQLDLYKHFIDSPE 522
Query: 701 VEQILDGSRNS-LYGIDVMRKICNHPDLL 728
++ +L G + L I +++K+CNHPDLL
Sbjct: 523 IKSLLRGKGSQPLKAIGILKKLCNHPDLL 551
Score = 85 (35.0 bits), Expect = 1.4e-59, Sum P(3) = 1.4e-59
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 422 GGIIGDEMGLGKTIQVLSFLGALHFSN------MYKPSIVVCPVTLLRQWKREAEKW 472
G I+ D MGLGKT+Q +S + L + + I+ CP +L+ W E KW
Sbjct: 265 GCIMADGMGLGKTLQCISLMWTLLKQSPEAGKTTIQKCIIACPSSLVGNWANELGKW 321
>ZFIN|ZDB-GENE-030131-9923 [details] [associations]
symbol:hells "helicase, lymphoid-specific"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000775
"chromosome, centromeric region" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0045132 "meiotic chromosome segregation"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR011515 Pfam:PF00176 Pfam:PF00271
Pfam:PF07557 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-9923 GO:GO:0005524 GO:GO:0005634 GO:GO:0000775
GO:GO:0003677 GO:GO:0004386 GO:GO:0045132 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 CTD:3070 HOVERGEN:HBG060049
EMBL:AY612850 IPI:IPI00817585 RefSeq:NP_001032178.1
UniGene:Dr.75180 ProteinModelPortal:Q3BDS6 STRING:Q3BDS6
GeneID:553328 KEGG:dre:553328 InParanoid:Q3BDS6 NextBio:20880094
ArrayExpress:Q3BDS6 Uniprot:Q3BDS6
Length = 853
Score = 352 (129.0 bits), Expect = 1.5e-59, Sum P(3) = 1.5e-59
Identities = 74/185 (40%), Positives = 112/185 (60%)
Query: 717 VMRKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVWKDQGHRVLLFAQTQ 772
++++ CNH L+E D+ E+ S K ++ ++L K +GH+VL+F+Q
Sbjct: 582 LLKRCCNHAYLIEYPLDPTTGDFKIDEQLVEASGKFLILDRMLPELKKRGHKVLIFSQMT 641
Query: 773 QMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTG 832
+LDIL + GYEY R+DG R + ++++ +VF+F+L+T+ GGLG NLT
Sbjct: 642 SILDILMDYCYLRGYEYSRLDGSMSYADRDENMKKFSSDPEVFLFLLSTRAGGLGINLTS 701
Query: 833 ANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNK 892
A+ VIIFD DWNP D+QA++R RIGQ + V V+RLIT TI+EK+ R K L
Sbjct: 702 ADTVIIFDSDWNPQADLQAQDRCHRIGQTKPVVVHRLITANTIDEKILERASAKRKLEKM 761
Query: 893 IL-KN 896
++ KN
Sbjct: 762 VIHKN 766
Score = 260 (96.6 bits), Expect = 1.5e-59, Sum P(3) = 1.5e-59
Identities = 64/193 (33%), Positives = 109/193 (56%)
Query: 521 PKKWDLLINRVLRSESGLL------ITTYEQLRLLGEKLLD-VEWGYAVLDEGHRIRNPN 573
P+K L + + +R G L +T++E + + K L W Y ++DEGHRI+N N
Sbjct: 315 PQKERLDLVKKIRQHQGSLRMCPVVVTSFE-IAMRDRKFLQRFHWNYLIVDEGHRIKNLN 373
Query: 574 AEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGG 633
+ K L T +++++TG P+QN LSELWSL +F+ P L FE+ F + T+
Sbjct: 374 CRLVQELKMLPTDNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDIS-TIT- 431
Query: 634 YANASPLQVSTAYRCAVVLRDLIM-PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVY 692
++A + + + + + LI+ P+LLRR+K+DV ++P K E V++ LT +Q A Y
Sbjct: 432 -SDAENIVANEREQNILHMLHLILTPFLLRRLKSDVTLEVPPKKEIVVYAPLTNKQEAFY 490
Query: 693 RAFLASSEVEQIL 705
A + + + ++L
Sbjct: 491 MA-IVNKTIAKLL 502
Score = 138 (53.6 bits), Expect = 1.5e-59, Sum P(3) = 1.5e-59
Identities = 32/90 (35%), Positives = 48/90 (53%)
Query: 405 YQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQ 464
YQ G++WL L GI+ DEMGLGKTIQ ++ + + + P +VV P++ L
Sbjct: 236 YQVEGIEWLRMLWENGINGILADEMGLGKTIQCIAHIAMMVEKKVLGPFLVVAPLSTLPN 295
Query: 465 WKREAEKWYPSFHVELLHDSAQD-LGFRKK 493
W E +++ P V L H ++ L KK
Sbjct: 296 WISEFKRFTPEVSVLLYHGPQKERLDLVKK 325
>UNIPROTKB|D4AA07 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS51194 SMART:SM00490 SMART:SM00592 RGD:621728
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
OrthoDB:EOG418BMJ IPI:IPI00915110 Ensembl:ENSRNOT00000060926
ArrayExpress:D4AA07 Uniprot:D4AA07
Length = 1262
Score = 331 (121.6 bits), Expect = 1.5e-59, Sum P(6) = 1.5e-59
Identities = 73/200 (36%), Positives = 115/200 (57%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQSCQ---------IPDYGNPERSEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S + S K +++ ++L
Sbjct: 830 GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILP 889
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+ H+VLLF Q ++ I+E + G++Y R+DG T + R L+ +N S+ F
Sbjct: 890 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 949
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 950 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1009
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 1010 EEKILAAAKYKLNVDQKVIQ 1029
Score = 290 (107.1 bits), Expect = 1.5e-59, Sum P(6) = 1.5e-59
Identities = 72/215 (33%), Positives = 116/215 (53%)
Query: 532 LRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRI 589
LRS + +L+TTYE + L + W Y ++DEGHR++N + +++ V R+
Sbjct: 647 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 706
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QNKL ELW+L +F+ P FE F P + G + ++
Sbjct: 707 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG----EKVDLNEEETIL 762
Query: 650 VV--LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------SE 700
++ L ++ P+LLRR+K +V AQLP+K E+V+ C ++ QR +YR A SE
Sbjct: 763 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 822
Query: 701 VEQILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
++ G +L I +RKICNHP + + E+S
Sbjct: 823 KDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEES 857
Score = 147 (56.8 bits), Expect = 1.5e-59, Sum P(6) = 1.5e-59
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L YQ G++WL L+ GI+ DEMGLGKTIQ ++ + L + P +++ P++
Sbjct: 553 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLS 612
Query: 461 LLRQWKREAEKWYPS 475
L W E +KW PS
Sbjct: 613 TLSNWAYEFDKWAPS 627
Score = 46 (21.3 bits), Expect = 1.5e-59, Sum P(6) = 1.5e-59
Identities = 31/135 (22%), Positives = 55/135 (40%)
Query: 49 PHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRR-VSTKEDNDIDDGDSTEQD 107
P K +DP QE+ Y + I + + L + TK ++
Sbjct: 153 PIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQ 212
Query: 108 GREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQ 167
R+ + V D L+ AL A K+ K++K Q ++E IT K +E Q
Sbjct: 213 -RQLRQEVVVCMRRDTALETALNA---KAYKRSKRQSLREAR-----ITEK-LEK----Q 258
Query: 168 DLVKEEHRPKRKSKE 182
+++E + ++K +E
Sbjct: 259 QKIEQERKRRQKHQE 273
Score = 45 (20.9 bits), Expect = 1.5e-59, Sum P(6) = 1.5e-59
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 244 QQPGPSNKQNVPDEQEARSNDPFSASVDR--ALRMMSEAAQ 282
+QP P+ +P E++ + DP S V A ++ A Q
Sbjct: 471 EQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQ 511
Score = 42 (19.8 bits), Expect = 2.4e-48, Sum P(4) = 2.4e-48
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVC 457
G + GD + TI+ L L L+F + +VVC
Sbjct: 189 GSLAGD-LRTKATIE-LKALRLLNFQRQLRQEVVVC 222
Score = 39 (18.8 bits), Expect = 1.4e-58, Sum P(5) = 1.4e-58
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 96 NDIDDGDSTEQDGREDEKSAVQASPNDMTLQ 126
+D ++ S E++ E+E+ A P + ++
Sbjct: 454 SDSEESGSEEEEEEEEEEQPQPAQPPTLPVE 484
Score = 37 (18.1 bits), Expect = 1.5e-59, Sum P(6) = 1.5e-59
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 1016 MNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTW 1058
M A EE+ L + + +R EA R R ++ +P+W
Sbjct: 1104 MIARHEEEFDLFMRMD-LDRRREEARNPKRKPRLMEEDELPSW 1145
>ZFIN|ZDB-GENE-030605-1 [details] [associations]
symbol:smarca4 "SWI/SNF related, matrix associated,
actin dependent regulator of chromatin, subfamily a, member 4"
species:7955 "Danio rerio" [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016818 "hydrolase activity, acting on acid anhydrides, in
phosphorus-containing anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031101 "fin regeneration" evidence=IMP] [GO:0003407 "neural
retina development" evidence=IMP] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0014032 "neural crest cell
development" evidence=IMP] [GO:0060059 "embryonic retina
morphogenesis in camera-type eye" evidence=IMP] [GO:0010842 "retina
layer formation" evidence=IMP] [GO:0021634 "optic nerve formation"
evidence=IMP] [GO:0030182 "neuron differentiation" evidence=IMP]
[GO:0060973 "cell migration involved in heart development"
evidence=IMP] [GO:0001947 "heart looping" evidence=IMP] [GO:0060038
"cardiac muscle cell proliferation" evidence=IMP] [GO:0048596
"embryonic camera-type eye morphogenesis" evidence=IMP] [GO:0000185
"activation of MAPKKK activity" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 ZFIN:ZDB-GENE-030605-1 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0030182 GO:GO:0003677 GO:GO:0007417
GO:GO:0004386 GO:GO:0001947 GO:GO:0010842 GO:GO:0014032
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0031101 GO:GO:0060038 GO:GO:0048596
KO:K11647 GeneTree:ENSGT00550000074659 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 GO:GO:0060059 GO:GO:0000185 HOGENOM:HOG000172363
HOVERGEN:HBG056636 CTD:6597 OMA:HKPMESM EMBL:BX322663 EMBL:BC163918
EMBL:BC163920 EMBL:AY205256 EMBL:AY218841 IPI:IPI00493397
RefSeq:NP_853634.1 UniGene:Dr.2414 SMR:Q7ZSY3 STRING:Q7ZSY3
Ensembl:ENSDART00000115110 Ensembl:ENSDART00000134514 GeneID:353295
KEGG:dre:353295 InParanoid:Q7ZSY3 NextBio:20812727 GO:GO:0060973
GO:GO:0021634 Uniprot:Q7ZSY3
Length = 1627
Score = 324 (119.1 bits), Expect = 1.6e-59, Sum P(5) = 1.6e-59
Identities = 74/200 (37%), Positives = 116/200 (58%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQSCQ--------IPDYGNPER-SEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S I + R S K +++ ++L
Sbjct: 1043 GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGSDLYRASGKFELLDRILP 1102
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSS-DVF 815
+ H+VLLF Q ++ I+E + ++Y R+DG T + R L+ +N+ S F
Sbjct: 1103 KLRATNHKVLLFCQMTTLMTIMEDYFAYRNFKYLRLDGTTKAEDRGMLLKNFNDPSHQYF 1162
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 1163 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1222
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 1223 EEKILAAAKYKLNVDQKVIQ 1242
Score = 296 (109.3 bits), Expect = 1.6e-59, Sum P(5) = 1.6e-59
Identities = 72/216 (33%), Positives = 118/216 (54%)
Query: 531 VLRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCK-QLQTVHR 588
+LRS + +L+TTYE + + L + W Y ++DEGHR++N + +++ V R
Sbjct: 859 ILRSGKFNVLVTTYEYIIKDKQVLAKLRWKYMIVDEGHRMKNHHCKLTQVLNTHYLAPRR 918
Query: 589 IIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRC 648
+++TG P+QNKL ELW+L +F+ P FE F P + G + ++
Sbjct: 919 VLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG----EKVDLNEEETI 974
Query: 649 AVV--LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------S 699
++ L ++ P+LLRR+K +V AQLP+K E+V+ C ++ QR +YR A S
Sbjct: 975 LIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGS 1034
Query: 700 EVEQILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
E ++ G +L I +RKICNHP + + E+S
Sbjct: 1035 EKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEES 1070
Score = 154 (59.3 bits), Expect = 1.6e-59, Sum P(5) = 1.6e-59
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L YQ G++WL L+ GI+ DEMGLGKTIQ ++ + L F + P +++ P++
Sbjct: 766 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEFKRLNGPFLIIVPLS 825
Query: 461 LLRQWKREAEKWYPS 475
L W E +KW PS
Sbjct: 826 TLSNWVYEFDKWAPS 840
Score = 54 (24.1 bits), Expect = 3.2e-49, Sum P(5) = 3.2e-49
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 482 HDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLIT 541
H +AQ L +KK+ K +N G+ +G + DL + +V+ +SG ++T
Sbjct: 589 HKAAQALKDKKKKKKKKKPENAEGGAPALGPDGEPLDETSQMSDLPV-KVIHVDSGKILT 647
Score = 48 (22.0 bits), Expect = 1.6e-59, Sum P(5) = 1.6e-59
Identities = 31/135 (22%), Positives = 56/135 (41%)
Query: 49 PHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRR-VSTKEDNDIDDGDSTEQD 107
P K +DP QE+ Y + I + + L + TK + ++
Sbjct: 372 PIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKANIELKALRLLNFQ 431
Query: 108 GREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQ 167
R+ + V D L+ AL A K+ K++K Q ++E IT K +E Q
Sbjct: 432 -RQLRQEVVVCMRRDTALETALNA---KAYKRSKRQSLREAR-----ITEK-LEK----Q 477
Query: 168 DLVKEEHRPKRKSKE 182
+++E + ++K +E
Sbjct: 478 QKIEQERKRRQKHQE 492
Score = 43 (20.2 bits), Expect = 2.5e-05, Sum P(3) = 2.5e-05
Identities = 13/46 (28%), Positives = 23/46 (50%)
Query: 492 KKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESG 537
+K + S+ D+ E D D EG+ S K + ++R ++E G
Sbjct: 1546 EKEEEESEGDDSEEEEDDVD-EGSESESRSVKVKIKLSRKDKAERG 1590
Score = 39 (18.8 bits), Expect = 1.6e-59, Sum P(5) = 1.6e-59
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 1035 QRAAEALRQSRMLRSRDDISVPTWTGK 1061
+R EA R R ++ +PTW K
Sbjct: 1302 RRREEARNPKRRPRLMEEDELPTWIMK 1328
Score = 38 (18.4 bits), Expect = 1.7e-58, Sum P(5) = 1.7e-58
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 96 NDIDDGDSTEQDGREDEKSAVQA 118
+D +D S E++ E+E QA
Sbjct: 673 SDSEDSGSDEEEDDEEEPQPSQA 695
Score = 37 (18.1 bits), Expect = 4.4e-48, Sum P(5) = 4.4e-48
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVC 457
G + GD + I+ L L L+F + +VVC
Sbjct: 408 GSLAGD-LRTKANIE-LKALRLLNFQRQLRQEVVVC 441
>RGD|1302988 [details] [associations]
symbol:Smarca2 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 2"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0001105 "RNA polymerase II transcription
coactivator activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0008285 "negative regulation of cell
proliferation" evidence=ISO] [GO:0016514 "SWI/SNF complex"
evidence=ISO] [GO:0030308 "negative regulation of cell growth"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=ISO] [GO:0044212
"transcription regulatory region DNA binding" evidence=ISO]
[GO:0045111 "intermediate filament cytoskeleton" evidence=ISO]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISO] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO] [GO:0071565 "nBAF
complex" evidence=ISO] [GO:0071778 "WINAC complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 RGD:1302988 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 CTD:6595 HOGENOM:HOG000172363 HOVERGEN:HBG056636
OrthoDB:EOG418BMJ IPI:IPI00464435 EMBL:AY643746
RefSeq:NP_001004446.1 UniGene:Rn.94939 ProteinModelPortal:Q6DUH4
SMR:Q6DUH4 STRING:Q6DUH4 GeneID:361745 KEGG:rno:361745
UCSC:RGD:1302988 InParanoid:Q6DUH4 NextBio:677480
Genevestigator:Q6DUH4 Uniprot:Q6DUH4
Length = 1597
Score = 336 (123.3 bits), Expect = 1.9e-59, Sum P(5) = 1.9e-59
Identities = 75/200 (37%), Positives = 116/200 (58%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQS-CQIPDYGNP--------ERSEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S + Y N S K +++ ++L
Sbjct: 1008 GAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGVINGAELYRASGKFELLDRILP 1067
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+ HRVLLF Q ++ I+E + + Y R+DG T + R AL+ ++N S F
Sbjct: 1068 KLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGTTKSEDRAALLKKFNEPGSQYF 1127
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ V+IFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 1128 IFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1187
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 1188 EEKILAAAKYKLNVDQKVIQ 1207
Score = 283 (104.7 bits), Expect = 1.9e-59, Sum P(5) = 1.9e-59
Identities = 72/213 (33%), Positives = 111/213 (52%)
Query: 532 LRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRI 589
LRS + L+TTYE + L + W Y ++DEGHR++N + +++ V RI
Sbjct: 825 LRSGKFNALLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRI 884
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QNKL ELW+L +F+ P FE F P + G L
Sbjct: 885 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--ERVDLNEEETILII 942
Query: 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------SEVE 702
L ++ P+LLRR+K +V +QLP+K E+V+ C ++ Q+ +YR A SE +
Sbjct: 943 RRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHMQAKGILLTDGSEKD 1002
Query: 703 QILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
+ G +L I +RKICNHP + + E+S
Sbjct: 1003 KKGKGGAKTLMNTIMQLRKICNHPYMFQHIEES 1035
Score = 140 (54.3 bits), Expect = 1.9e-59, Sum P(5) = 1.9e-59
Identities = 28/79 (35%), Positives = 43/79 (54%)
Query: 398 IFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVV 456
I L YQ G++W+ L+ GI+ DEMG GKTIQ ++ + L + P +++
Sbjct: 727 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGPGKTIQTIALITYLMEHKGLNGPYLII 786
Query: 457 CPVTLLRQWKREAEKWYPS 475
P++ L W E +KW PS
Sbjct: 787 VPLSTLSNWTYEFDKWAPS 805
Score = 52 (23.4 bits), Expect = 1.9e-59, Sum P(5) = 1.9e-59
Identities = 15/75 (20%), Positives = 39/75 (52%)
Query: 987 GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRM 1046
G ++ E++ +L+S+F + A ++ +++EE EE+ + ++ A++++
Sbjct: 1492 GSQIYEDSIVLQSVFKSARQKIAKEEESEEESNEEE----EEEDEEESEAEAKSVKVKIK 1547
Query: 1047 LRSRDDISVPTWTGK 1061
L +++ T GK
Sbjct: 1548 LNKKEEKGRDTGKGK 1562
Score = 52 (23.4 bits), Expect = 1.9e-59, Sum P(6) = 1.9e-59
Identities = 27/117 (23%), Positives = 47/117 (40%)
Query: 49 PHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRR-VSTKEDNDIDDGDSTEQD 107
P K + +DP QE+ Y + I + S L + TK ++
Sbjct: 337 PIQKPQGLDPVEILQEREYRLQARIAHRIQELESLPGSLPPDLRTKATVELKALRLLNFQ 396
Query: 108 GREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDK 164
R+ + V D TL+ AL + K+ K++K Q ++E K + IE ++
Sbjct: 397 -RQLRQEVVACMRRDTTLETALNS---KAYKRSKRQTLREARMTEKLEKQQKIEQER 449
Score = 48 (22.0 bits), Expect = 1.9e-59, Sum P(5) = 1.9e-59
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 88 RRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPN 121
R S + ++D ++ D E+ R++ + + PN
Sbjct: 639 RSDSEESESDYEEEDEEEESSRQETEEKILLDPN 672
Score = 42 (19.8 bits), Expect = 8.0e-59, Sum P(5) = 8.0e-59
Identities = 13/55 (23%), Positives = 29/55 (52%)
Query: 133 RLKSLKKTK--AQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQK 185
+L KK + A L+++ + +T+ EH + KE+ + +R+ K+A++
Sbjct: 523 KLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQ--AQAAKEKKKRRRRRKKAEE 575
Score = 41 (19.5 bits), Expect = 1.0e-58, Sum P(5) = 1.0e-58
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 90 VSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTL 125
V+ + D++ + D E+D E+E+S+ Q + + L
Sbjct: 636 VAPRSDSEESESDYEEED--EEEESSRQETEEKILL 669
Score = 40 (19.1 bits), Expect = 1.9e-59, Sum P(6) = 1.9e-59
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 163 DKFIQDLVKE--EHRPKRKSKEAQKPGKDRSKQQK 195
D+++ +L EH+ + +KE +K + R K ++
Sbjct: 541 DEYVANLTNLVWEHKQAQAAKEKKKRRRRRKKAEE 575
Score = 39 (18.8 bits), Expect = 1.6e-58, Sum P(5) = 1.6e-58
Identities = 15/65 (23%), Positives = 31/65 (47%)
Query: 88 RRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVK- 146
+ VS K+ I + + D + + + S + T+ HA++ +R++ K A L+
Sbjct: 674 KEVSEKDARQIIETAKQDVDDEYSMQYSARGSQSYYTVAHAIS-ERVE---KQSALLING 729
Query: 147 ELSHF 151
L H+
Sbjct: 730 TLKHY 734
Score = 37 (18.1 bits), Expect = 2.6e-58, Sum P(5) = 2.6e-58
Identities = 5/26 (19%), Positives = 18/26 (69%)
Query: 171 KEEHRPKRKSKEAQKPGKDRSKQQKT 196
+++ + +++ ++ Q+P + + QQ+T
Sbjct: 219 QQQQQQQQQQQQQQQPQQPQQPQQQT 244
Score = 37 (18.1 bits), Expect = 6.6e-58, Sum P(6) = 6.6e-58
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 1173 CTFMQQRGGSSNSACIVEHFKDRVPS-KDLPLFKNLLKEIATLQK 1216
C + G+S+ + E F ++PS K+LP + L+++ +K
Sbjct: 1415 CNSQLEIEGNSSGRQLSEVFI-QLPSRKELPEYYELIRKPVDFKK 1458
>MGI|MGI:88393 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=NAS] [GO:0004386 "helicase activity"
evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=NAS]
[GO:0006338 "chromatin remodeling" evidence=IGI] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0035064 "methylated histone
residue binding" evidence=ISO] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 MGI:MGI:88393 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 GO:GO:0006338 GO:GO:0006333
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 HOVERGEN:HBG005325
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 HOGENOM:HOG000207917
OMA:AETHENE OrthoDB:EOG4PG601 EMBL:L10410 EMBL:CH466630
EMBL:BC115822 IPI:IPI00107999 PIR:A47392 RefSeq:NP_031716.2
UniGene:Mm.8137 ProteinModelPortal:P40201 SMR:P40201 IntAct:P40201
STRING:P40201 PhosphoSite:P40201 PaxDb:P40201 PRIDE:P40201
Ensembl:ENSMUST00000024627 GeneID:12648 KEGG:mmu:12648
InParanoid:Q14BJ0 NextBio:281852 Bgee:P40201 CleanEx:MM_CHD1
Genevestigator:P40201 GermOnline:ENSMUSG00000023852 Uniprot:P40201
Length = 1711
Score = 536 (193.7 bits), Expect = 3.0e-59, Sum P(5) = 3.0e-59
Identities = 134/399 (33%), Positives = 222/399 (55%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHR 568
Y G+++SRN + + + + R + +L+TTYE L L +K L + W + +DE HR
Sbjct: 559 YLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEIL--LKDKAFLGGLNWAFIGVDEAHR 616
Query: 569 IRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP 628
++N ++ + ++ HR+++TG P+QN L ELWSL F+ P K FE E
Sbjct: 617 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKG 676
Query: 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQ 688
G YA+ L + P+LLRR+K DV LP K E +L ++ Q
Sbjct: 677 REYG-YAS---------------LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ 720
Query: 689 RAVYRAFLASSEVEQILDGSRNSLYG-IDVM---RKICNHPDLLEREQSCQIPDYGNPE- 743
+ Y+ ++ + + + GS+ S G +++M +K CNH L++ + + Y E
Sbjct: 721 KQYYK-WILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEF--YNKQEA 777
Query: 744 -----RSE-KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTP 797
RS K+ ++ ++L +++G+RVL+F+Q +MLDIL +L + ++R+DG
Sbjct: 778 LQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 837
Query: 798 VKQRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAW 856
+ R +D +N S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA
Sbjct: 838 GELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAH 897
Query: 857 RIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
RIGQK+ V +YRL+T+G++EE + R K L + +++
Sbjct: 898 RIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQ 936
Score = 165 (63.1 bits), Expect = 3.0e-59, Sum P(5) = 3.0e-59
Identities = 40/95 (42%), Positives = 53/95 (55%)
Query: 383 PPFVTLEGGLKIPESIFNN----LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVL 438
P FV L+ K P I + L DYQ G+ WL C+ I+ DEMGLGKTIQ +
Sbjct: 459 PRFVALK---KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTI 515
Query: 439 SFLGAL-HFSNMYKPSIVVCPVTLLRQWKREAEKW 472
SFL L H +Y P ++V P++ L W+RE + W
Sbjct: 516 SFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTW 550
Score = 49 (22.3 bits), Expect = 3.0e-59, Sum P(5) = 3.0e-59
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 161 EHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTV 197
E DK D + ++ PK K + + + +SK K +
Sbjct: 168 ERDKSSCDGTESDYEPKNKVRSRKPQNRSKSKNGKKI 204
Score = 48 (22.0 bits), Expect = 3.0e-59, Sum P(5) = 3.0e-59
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 1127 AVGAGLERQFEVASSSANVARFADTRTSRSSKNASDVQPE 1166
+VG L QF+VA+ S + R+SKN ++ PE
Sbjct: 1008 SVGDELLSQFKVANFSNMDEDDIELEPERNSKNWEEIIPE 1047
Score = 46 (21.3 bits), Expect = 3.0e-59, Sum P(5) = 3.0e-59
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 91 STKEDNDIDDGDSTEQDGREDEKSAVQASP 120
S+ D+ D G +E + ++ VQA P
Sbjct: 49 SSDSDSGSDSGSQSESESDTSRENKVQAKP 78
Score = 46 (21.3 bits), Expect = 2.2e-46, Sum P(3) = 2.2e-46
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 484 SAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWD 525
SA G SSD + GS DSD + S++ + D
Sbjct: 26 SASGSGSGSSSGSSSDGSSSQSGSSDSDSGSDSGSQSESESD 67
Score = 43 (20.2 bits), Expect = 4.4e-46, Sum P(4) = 4.4e-46
Identities = 11/50 (22%), Positives = 22/50 (44%)
Query: 480 LLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSR---NPKKWDL 526
+L Q ++ + +S ++ D S DSD + + R N + W +
Sbjct: 101 MLRKQPQQAQQQRPASSNSGSEEDSSSSEDSDDSSSGAKRKKHNDEDWQM 150
Score = 42 (19.8 bits), Expect = 2.5e-58, Sum P(4) = 2.5e-58
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 88 RRVSTKEDNDIDDGDSTEQDGR 109
R++ + ED D +D D+ ++ R
Sbjct: 210 RQIDSSEDEDDEDYDNDKRSSR 231
Score = 40 (19.1 bits), Expect = 2.0e-58, Sum P(5) = 2.0e-58
Identities = 25/99 (25%), Positives = 43/99 (43%)
Query: 985 NIGDEVDEETNILK-SLFDANGIH-----SAMNHDAIMNAHDEEKMRLEEQASQVAQRAA 1038
++GDE+ + + S D + I ++ N + I+ +E++ RLEE+ Q +
Sbjct: 1008 SVGDELLSQFKVANFSNMDEDDIELEPERNSKNWEEIIP--EEQRRRLEEEERQ--KELE 1063
Query: 1039 EALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGS 1077
E RM IS +G+ G S R+ GS
Sbjct: 1064 EIYMLPRMRNCAKQISF------NGSEGRRSRSRRYSGS 1096
Score = 40 (19.1 bits), Expect = 9.5e-46, Sum P(3) = 9.5e-46
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 497 SSDTDNDGEGSHDSDYEGNLSSRN 520
SSD+D+ + S+ E + S N
Sbjct: 49 SSDSDSGSDSGSQSESESDTSREN 72
Score = 40 (19.1 bits), Expect = 3.1e-06, Sum P(4) = 3.1e-06
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 1106 SAGKVLSSSELLARIR--GNQENAVGAGLERQFEVASSSANVARFADTRTSRSSK 1158
S+GK++ +LL R+R GN+ + + + R ++ + +F R S K
Sbjct: 784 SSGKLILLDKLLIRLRERGNRV-LIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 837
Score = 39 (18.8 bits), Expect = 1.2e-45, Sum P(3) = 1.2e-45
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 498 SDTDNDGEGSHDSDYEGNLSSRNPK 522
SD+ + E D+ E + ++ PK
Sbjct: 56 SDSGSQSESESDTSRENKVQAKPPK 80
Score = 38 (18.4 bits), Expect = 4.0e-58, Sum P(5) = 4.0e-58
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 244 QQPGPSNKQNVPDEQEARSNDPFSASVDR 272
Q+P SN + D + +D S+ R
Sbjct: 112 QRPASSNSGSEEDSSSSEDSDDSSSGAKR 140
Score = 38 (18.4 bits), Expect = 6.5e-58, Sum P(4) = 6.5e-58
Identities = 13/57 (22%), Positives = 21/57 (36%)
Query: 51 DKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQD 107
D S S D +S K ++++ S ++E+ D D TE D
Sbjct: 124 DSSSSEDSDDSSSGAKRKKHNDEDWQMSGSGSPSQSGSDSESEEERDKSSCDGTESD 180
Score = 38 (18.4 bits), Expect = 4.9e-06, Sum P(4) = 4.9e-06
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 486 QDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSR 519
QD + R K D+ H EG L R
Sbjct: 1594 QDSRYYSDREKHRKLDDHRSREHRPSLEGGLKDR 1627
>UNIPROTKB|O14981 [details] [associations]
symbol:BTAF1 "TATA-binding protein-associated factor 172"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=NAS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0045892 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
PROSITE:PS50077 GO:GO:0003677 GO:GO:0003700 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AJ001017 EMBL:AF038362 EMBL:AF166118 IPI:IPI00024802
RefSeq:NP_003963.1 UniGene:Hs.500526 ProteinModelPortal:O14981
SMR:O14981 IntAct:O14981 MINT:MINT-2795412 STRING:O14981
PhosphoSite:O14981 PaxDb:O14981 PeptideAtlas:O14981 PRIDE:O14981
Ensembl:ENST00000265990 GeneID:9044 KEGG:hsa:9044 UCSC:uc001khr.3
CTD:9044 GeneCards:GC10P093673 HGNC:HGNC:17307 HPA:HPA042274
MIM:605191 neXtProt:NX_O14981 PharmGKB:PA25437 HOGENOM:HOG000210415
HOVERGEN:HBG017883 InParanoid:O14981 KO:K15192 OMA:TKQEGAI
OrthoDB:EOG4W0XC6 PhylomeDB:O14981 GenomeRNAi:9044 NextBio:33875
ArrayExpress:O14981 Bgee:O14981 CleanEx:HS_BTAF1
Genevestigator:O14981 GermOnline:ENSG00000095564 InterPro:IPR022707
Pfam:PF12054 Uniprot:O14981
Length = 1849
Score = 355 (130.0 bits), Expect = 3.8e-59, Sum P(5) = 3.8e-59
Identities = 73/168 (43%), Positives = 102/168 (60%)
Query: 763 HRVLLFAQTQQMLDILESFLIAS---GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFIL 819
HR+L+F Q + MLDI+E L+ Y R+DG P QR +++ +NN + + +L
Sbjct: 1645 HRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLL 1704
Query: 820 TTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKV 879
TT VGGLG NLTGA+ V+ + DWNP D+QA +RA RIGQK+ V VYRLITRGT+EEK+
Sbjct: 1705 TTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKI 1764
Query: 880 YHRQIYKHFLTNKILKNPQQR-RFFKARNMKDLFTLNDDGNGGSTETS 926
Q +K + N ++ + + DLFTL+ DG +TS
Sbjct: 1765 MGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDGKAEKADTS 1812
Score = 278 (102.9 bits), Expect = 3.8e-59, Sum P(5) = 3.8e-59
Identities = 60/161 (37%), Positives = 89/161 (55%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
L++ +Y+ +R + ++++ Y +LDEGH I+N ++S KQL +RII++G PIQ
Sbjct: 1378 LIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQ 1437
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N + ELWSLFDF+ PG LG F A + PI A +S + L ++
Sbjct: 1438 NNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAGVLAMDALHRQVL 1497
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS 698
P+LLRRMK DV LP K +C+L+ Q +Y F S
Sbjct: 1498 PFLLRRMKEDVLQDLPPKIIQDYYCTLSPLQVQLYEDFAKS 1538
Score = 132 (51.5 bits), Expect = 3.8e-59, Sum P(5) = 3.8e-59
Identities = 38/102 (37%), Positives = 50/102 (49%)
Query: 393 KIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA--LHFSNMY 450
KIP I L YQ+ GV WL L+ + GI+ D+MGLGKT+Q + L H + Y
Sbjct: 1257 KIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEY 1316
Query: 451 K----------PSIVVCPVTLLRQWKREAEKWYPSFHVELLH 482
PS+VVCP TL W E K+ ++ LH
Sbjct: 1317 ARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLH 1358
Score = 57 (25.1 bits), Expect = 3.8e-59, Sum P(5) = 3.8e-59
Identities = 24/80 (30%), Positives = 36/80 (45%)
Query: 698 SSEVEQI-LDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLK 756
S E E+ L + + + +RK+CNHP L+ Q P++ +EK+ V L
Sbjct: 1554 SEETEKPKLKATGHVFQALQYLRKLCNHPALVLTPQH---PEFKTT--AEKLAVQNSSLH 1608
Query: 757 VWKDQGHRVLLFAQTQQMLD 776
D H L A Q +LD
Sbjct: 1609 ---DIQHAPKLSALKQLLLD 1625
Score = 37 (18.1 bits), Expect = 3.8e-59, Sum P(5) = 3.8e-59
Identities = 20/82 (24%), Positives = 37/82 (45%)
Query: 229 ILTPFHKLKGFERCIQQPGPSNKQNVPDEQEARSNDPFSASVDRALRMMSEAAQARPSTK 288
I PF +++ C Q S+ +V E R N+ ++D+A +++ S+
Sbjct: 767 IAVPFTRMQN--ECKQLI--SSLADVHIEVGNRVNNNV-LTIDQASDLVTTVFNEATSSF 821
Query: 289 LLDPESLPKLDGPTRPFQRLKT 310
L+P+ L +LD + Q T
Sbjct: 822 DLNPQVLQQLDSKRQQVQMTVT 843
Score = 37 (18.1 bits), Expect = 1.7e-24, Sum P(3) = 1.7e-24
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 701 VEQILDGSRNSLYGIDV 717
+EQ+LDG + Y I V
Sbjct: 1244 LEQLLDGKKLENYKIPV 1260
>CGD|CAL0001568 [details] [associations]
symbol:RAD54 species:5476 "Candida albicans" [GO:0007067
"mitosis" evidence=IMP] [GO:0000085 "G2 phase of mitotic cell
cycle" evidence=IMP] [GO:0006997 "nucleus organization"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0015616 "DNA
translocase activity" evidence=IEA] [GO:0032392 "DNA geometric
change" evidence=IEA] [GO:0000722 "telomere maintenance via
recombination" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0032079 "positive regulation of endodeoxyribonuclease activity"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 CGD:CAL0001568 GO:GO:0005524
GO:GO:0007067 GO:GO:0003677 GO:GO:0000085 GO:GO:0004386
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006997
KO:K10875 RefSeq:XP_722208.1 RefSeq:XP_722322.1
ProteinModelPortal:Q5AKX3 STRING:Q5AKX3 GeneID:3636027
GeneID:3636192 KEGG:cal:CaO19.12471 KEGG:cal:CaO19.5004
Uniprot:Q5AKX3
Length = 848
Score = 345 (126.5 bits), Expect = 3.9e-59, Sum P(4) = 3.9e-59
Identities = 69/186 (37%), Positives = 110/186 (59%)
Query: 745 SEKMKVVAQVL-KVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMA 803
S K ++ + L K+ K+ +++L + Q LD++E Y R+DG + +R
Sbjct: 604 SGKFLILERFLQKINKETDDKIVLISNYTQTLDLIEKMCRYKKYGVLRLDGTMNINKRQK 663
Query: 804 LIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQ 862
L+D++N+ + FIF+L++K GG G NL GANR+++ DPDWNP++D QA R WR GQK+
Sbjct: 664 LVDKFNDPNGPEFIFLLSSKAGGCGINLIGANRLVLMDPDWNPASDQQALARVWRDGQKK 723
Query: 863 DVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLNDDGNGG 921
D +YR I+ GTIEEK++ RQ K L++ ++ + R F N++ LF D
Sbjct: 724 DCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDEKEDVERLFSVANLRQLFKFQPDTQCD 783
Query: 922 STETSN 927
+ +T N
Sbjct: 784 THDTFN 789
Score = 297 (109.6 bits), Expect = 3.9e-59, Sum P(4) = 3.9e-59
Identities = 66/193 (34%), Positives = 109/193 (56%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
+LI +YE LR +KL E G + DEGHR++N ++ L+ R+I++G PIQ
Sbjct: 376 VLIISYETLRRNVDKLAGTEVGLMLADEGHRLKNGDSLTFTALNSLRCERRVILSGTPIQ 435
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N LSE +SL +F PG LG F+ + I G + AS + + L ++
Sbjct: 436 NDLSEYFSLLNFANPGYLGTRIEFKKNYENAILKGRDSTASDEEREKGDKKLNELSQMVS 495
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNS-LYGID 716
+++RR ++ LP K E+VLF L+ Q+ +Y F+ S E+++++ G+ + L I
Sbjct: 496 KFIIRRTNDILSKYLPIKYEYVLFTGLSPMQKDIYNHFITSPEIKKLMKGTGSQPLKAIG 555
Query: 717 VMRKICNHPDLLE 729
+++K+CNHPDLL+
Sbjct: 556 MLKKLCNHPDLLD 568
Score = 111 (44.1 bits), Expect = 3.9e-59, Sum P(4) = 3.9e-59
Identities = 30/78 (38%), Positives = 42/78 (53%)
Query: 405 YQKVGVQWLWE----LHCQRAGG-IIGDEMGLGKTIQVLSFLGAL-----HFSNMYKPSI 454
+Q GV++L+ L RA G I+ DEMGLGKT+Q L+ + L + I
Sbjct: 259 HQIAGVKFLYRCTAGLIDARAKGCIMADEMGLGKTLQCLTLMWTLLRQSPRGKRTIEKCI 318
Query: 455 VVCPVTLLRQWKREAEKW 472
+VCP +L+R W E KW
Sbjct: 319 IVCPSSLVRNWANEIVKW 336
Score = 40 (19.1 bits), Expect = 9.2e-52, Sum P(4) = 9.2e-52
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 497 SSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINR-VLRSES 536
+S+ D++ E ++D + G+ KK+ L+ R ++ S++
Sbjct: 79 TSEKDDEEEYNNDQNVNGDGQIIKRKKFGALLPRSIINSDN 119
Score = 38 (18.4 bits), Expect = 3.9e-59, Sum P(4) = 3.9e-59
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 281 AQARPSTKLLDP----ESLPKLDGPTRPFQ---RLKTPFRMPQSEESE 321
A +P T+ P +PK P R RL PF++P S ++
Sbjct: 2 AVRKPLTQFTTPLGSGAGVPKDKRPPRVTDSATRLSKPFKVPFSSSTQ 49
>UNIPROTKB|Q5AKX3 [details] [associations]
symbol:RAD54 "Putative uncharacterized protein RAD54"
species:237561 "Candida albicans SC5314" [GO:0000085 "G2 phase of
mitotic cell cycle" evidence=IMP] [GO:0006997 "nucleus
organization" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR013967
Pfam:PF00176 Pfam:PF00271 Pfam:PF08658 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001568 GO:GO:0005524 GO:GO:0007067
GO:GO:0003677 GO:GO:0000085 GO:GO:0004386 EMBL:AACQ01000010
EMBL:AACQ01000009 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006997 KO:K10875 RefSeq:XP_722208.1
RefSeq:XP_722322.1 ProteinModelPortal:Q5AKX3 STRING:Q5AKX3
GeneID:3636027 GeneID:3636192 KEGG:cal:CaO19.12471
KEGG:cal:CaO19.5004 Uniprot:Q5AKX3
Length = 848
Score = 345 (126.5 bits), Expect = 3.9e-59, Sum P(4) = 3.9e-59
Identities = 69/186 (37%), Positives = 110/186 (59%)
Query: 745 SEKMKVVAQVL-KVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMA 803
S K ++ + L K+ K+ +++L + Q LD++E Y R+DG + +R
Sbjct: 604 SGKFLILERFLQKINKETDDKIVLISNYTQTLDLIEKMCRYKKYGVLRLDGTMNINKRQK 663
Query: 804 LIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQ 862
L+D++N+ + FIF+L++K GG G NL GANR+++ DPDWNP++D QA R WR GQK+
Sbjct: 664 LVDKFNDPNGPEFIFLLSSKAGGCGINLIGANRLVLMDPDWNPASDQQALARVWRDGQKK 723
Query: 863 DVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLNDDGNGG 921
D +YR I+ GTIEEK++ RQ K L++ ++ + R F N++ LF D
Sbjct: 724 DCFIYRFISTGTIEEKIFQRQSMKMSLSSCVVDEKEDVERLFSVANLRQLFKFQPDTQCD 783
Query: 922 STETSN 927
+ +T N
Sbjct: 784 THDTFN 789
Score = 297 (109.6 bits), Expect = 3.9e-59, Sum P(4) = 3.9e-59
Identities = 66/193 (34%), Positives = 109/193 (56%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
+LI +YE LR +KL E G + DEGHR++N ++ L+ R+I++G PIQ
Sbjct: 376 VLIISYETLRRNVDKLAGTEVGLMLADEGHRLKNGDSLTFTALNSLRCERRVILSGTPIQ 435
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N LSE +SL +F PG LG F+ + I G + AS + + L ++
Sbjct: 436 NDLSEYFSLLNFANPGYLGTRIEFKKNYENAILKGRDSTASDEEREKGDKKLNELSQMVS 495
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNS-LYGID 716
+++RR ++ LP K E+VLF L+ Q+ +Y F+ S E+++++ G+ + L I
Sbjct: 496 KFIIRRTNDILSKYLPIKYEYVLFTGLSPMQKDIYNHFITSPEIKKLMKGTGSQPLKAIG 555
Query: 717 VMRKICNHPDLLE 729
+++K+CNHPDLL+
Sbjct: 556 MLKKLCNHPDLLD 568
Score = 111 (44.1 bits), Expect = 3.9e-59, Sum P(4) = 3.9e-59
Identities = 30/78 (38%), Positives = 42/78 (53%)
Query: 405 YQKVGVQWLWE----LHCQRAGG-IIGDEMGLGKTIQVLSFLGAL-----HFSNMYKPSI 454
+Q GV++L+ L RA G I+ DEMGLGKT+Q L+ + L + I
Sbjct: 259 HQIAGVKFLYRCTAGLIDARAKGCIMADEMGLGKTLQCLTLMWTLLRQSPRGKRTIEKCI 318
Query: 455 VVCPVTLLRQWKREAEKW 472
+VCP +L+R W E KW
Sbjct: 319 IVCPSSLVRNWANEIVKW 336
Score = 40 (19.1 bits), Expect = 9.2e-52, Sum P(4) = 9.2e-52
Identities = 10/41 (24%), Positives = 24/41 (58%)
Query: 497 SSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINR-VLRSES 536
+S+ D++ E ++D + G+ KK+ L+ R ++ S++
Sbjct: 79 TSEKDDEEEYNNDQNVNGDGQIIKRKKFGALLPRSIINSDN 119
Score = 38 (18.4 bits), Expect = 3.9e-59, Sum P(4) = 3.9e-59
Identities = 14/48 (29%), Positives = 21/48 (43%)
Query: 281 AQARPSTKLLDP----ESLPKLDGPTRPFQ---RLKTPFRMPQSEESE 321
A +P T+ P +PK P R RL PF++P S ++
Sbjct: 2 AVRKPLTQFTTPLGSGAGVPKDKRPPRVTDSATRLSKPFKVPFSSSTQ 49
>UNIPROTKB|O14646 [details] [associations]
symbol:CHD1 "Chromodomain-helicase-DNA-binding protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035064 "methylated histone residue
binding" evidence=IDA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=TAS] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006357 GO:GO:0006351 GO:GO:0006338
GO:GO:0004003 GO:GO:0035064 InterPro:IPR016197 SUPFAM:SSF54160
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
HOVERGEN:HBG005325 InterPro:IPR025260 Pfam:PF13907 CTD:1105
KO:K11367 EMBL:AF006513 EMBL:AC022121 EMBL:BC117134 IPI:IPI00297851
IPI:IPI00954192 RefSeq:NP_001261.2 UniGene:Hs.643465 PDB:2B2T
PDB:2B2U PDB:2B2V PDB:2B2W PDB:2B2Y PDB:4B4C PDBsum:2B2T
PDBsum:2B2U PDBsum:2B2V PDBsum:2B2W PDBsum:2B2Y PDBsum:4B4C
ProteinModelPortal:O14646 SMR:O14646 IntAct:O14646 STRING:O14646
PhosphoSite:O14646 PaxDb:O14646 PRIDE:O14646
Ensembl:ENST00000284049 GeneID:1105 KEGG:hsa:1105 UCSC:uc003knf.3
GeneCards:GC05M098219 H-InvDB:HIX0005061 HGNC:HGNC:1915
HPA:HPA022236 MIM:602118 neXtProt:NX_O14646 PharmGKB:PA26451
HOGENOM:HOG000207917 InParanoid:O14646 OMA:AETHENE
OrthoDB:EOG4PG601 PhylomeDB:O14646 DrugBank:DB00445
EvolutionaryTrace:O14646 GenomeRNAi:1105 NextBio:4580
ArrayExpress:O14646 Bgee:O14646 CleanEx:HS_CHD1
Genevestigator:O14646 GermOnline:ENSG00000153922 Uniprot:O14646
Length = 1710
Score = 536 (193.7 bits), Expect = 4.7e-59, Sum P(4) = 4.7e-59
Identities = 134/399 (33%), Positives = 222/399 (55%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHR 568
Y G+++SRN + + ++ R + +L+TTYE L L +K L + W + +DE HR
Sbjct: 561 YLGDINSRNMIRTHEWTHHQTKRLKFNILLTTYEIL--LKDKAFLGGLNWAFIGVDEAHR 618
Query: 569 IRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP 628
++N ++ + ++ HR+++TG P+QN L ELWSL F+ P K FE E
Sbjct: 619 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKG 678
Query: 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQ 688
G YA+ L + P+LLRR+K DV LP K E +L ++ Q
Sbjct: 679 REYG-YAS---------------LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ 722
Query: 689 RAVYRAFLASSEVEQILDGSRNSLYG-IDVM---RKICNHPDLLEREQSCQIPDYGNPE- 743
+ Y+ ++ + + + GS+ S G +++M +K CNH L++ + + Y E
Sbjct: 723 KQYYK-WILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEF--YNKQEA 779
Query: 744 -----RSE-KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTP 797
RS K+ ++ ++L +++G+RVL+F+Q +MLDIL +L + ++R+DG
Sbjct: 780 LQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 839
Query: 798 VKQRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAW 856
+ R +D +N S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA
Sbjct: 840 GELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAH 899
Query: 857 RIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
RIGQK+ V +YRL+T+G++EE + R K L + +++
Sbjct: 900 RIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQ 938
Score = 165 (63.1 bits), Expect = 4.7e-59, Sum P(4) = 4.7e-59
Identities = 40/95 (42%), Positives = 53/95 (55%)
Query: 383 PPFVTLEGGLKIPESIFNN----LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVL 438
P FV L+ K P I + L DYQ G+ WL C+ I+ DEMGLGKTIQ +
Sbjct: 461 PRFVALK---KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTI 517
Query: 439 SFLGAL-HFSNMYKPSIVVCPVTLLRQWKREAEKW 472
SFL L H +Y P ++V P++ L W+RE + W
Sbjct: 518 SFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTW 552
Score = 50 (22.7 bits), Expect = 4.7e-59, Sum P(4) = 4.7e-59
Identities = 26/114 (22%), Positives = 43/114 (37%)
Query: 91 STKEDNDIDDGDSTEQDGREDEKSAVQASPNDM-------TLQHALTADRLKSLKKTKAQ 143
S+ D+ + G +E + ++ VQA P + + L R LKK + Q
Sbjct: 49 SSDSDSGSESGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAILKKQQQQ 108
Query: 144 LVKELSHFPKGITSKGIEHDKFIQ----DLVKEEHRPKRKSKEAQKPGKDRSKQ 193
++ H + ++ G E D D E R K K ++ Q G Q
Sbjct: 109 QQQQ-QH--QASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQ 159
Score = 49 (22.3 bits), Expect = 5.9e-59, Sum P(4) = 5.9e-59
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 161 EHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTV 197
E +K D + ++ PK K K + + +SK K +
Sbjct: 169 EREKSSCDETESDYEPKNKVKSRKPQNRSKSKNGKKI 205
Score = 47 (21.6 bits), Expect = 4.7e-59, Sum P(4) = 4.7e-59
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 1128 VGAGLERQFEVASSSANVARFADTRTSRSSKNASDVQPE 1166
VG L QF+VA+ S + R+SKN ++ PE
Sbjct: 1011 VGDELLSQFKVANFSNMDEDDIELEPERNSKNWEEIIPE 1049
Score = 46 (21.3 bits), Expect = 1.0e-46, Sum P(4) = 1.0e-46
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 488 LGFRKKRAKSSDTDNDGEGSHDSD 511
LG +K++ SS+ D+D E +D+D
Sbjct: 206 LGQKKRQIDSSEEDDDEE-DYDND 228
Score = 46 (21.3 bits), Expect = 7.2e-07, Sum P(3) = 7.2e-07
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 486 QDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
QD + R K D+ H S+ EG+L R+
Sbjct: 1593 QDSRYYSDREKHRKLDDHRSRDHRSNLEGSLKDRS 1627
Score = 45 (20.9 bits), Expect = 3.6e-46, Sum P(3) = 3.6e-46
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 484 SAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWD 525
SA G SSD + GS DSD S++ + D
Sbjct: 26 SASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESD 67
Score = 44 (20.5 bits), Expect = 2.0e-58, Sum P(4) = 2.0e-58
Identities = 16/62 (25%), Positives = 31/62 (50%)
Query: 48 KPHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQD 107
+P +K +S P + S+ K K+ +G +D S++ED+D +D D+ ++
Sbjct: 183 EPKNKVKSRKPQNRSKSKNGKKI------LGQKKRQID-----SSEEDDDEEDYDNDKRS 231
Query: 108 GR 109
R
Sbjct: 232 SR 233
Score = 43 (20.2 bits), Expect = 5.8e-46, Sum P(3) = 5.8e-46
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 497 SSDTDNDGEGSHDSDYEGNLSSRN 520
SSD+D+ E S+ E + S N
Sbjct: 49 SSDSDSGSESGSQSESESDTSREN 72
Score = 42 (19.8 bits), Expect = 3.2e-58, Sum P(4) = 3.2e-58
Identities = 13/57 (22%), Positives = 23/57 (40%)
Query: 51 DKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQD 107
D S S D +S E K + ++++ S ++E+ + D TE D
Sbjct: 125 DSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDETESD 181
Score = 40 (19.1 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 1106 SAGKVLSSSELLARIR--GNQENAVGAGLERQFEVASSSANVARFADTRTSRSSK 1158
S+GK++ +LL R+R GN+ + + + R ++ + +F R S K
Sbjct: 786 SSGKLILLDKLLIRLRERGNRV-LIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 839
>UNIPROTKB|E2QUI5 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 CTD:1105
GeneTree:ENSGT00560000076896 KO:K11367 EMBL:AAEX03002026
RefSeq:XP_848459.1 Ensembl:ENSCAFT00000012332 GeneID:488891
KEGG:cfa:488891 NextBio:20862162 Uniprot:E2QUI5
Length = 1711
Score = 536 (193.7 bits), Expect = 4.7e-59, Sum P(4) = 4.7e-59
Identities = 134/399 (33%), Positives = 222/399 (55%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHR 568
Y G+++SRN + + + + R + +L+TTYE L L +K L + W + +DE HR
Sbjct: 560 YLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEIL--LKDKAFLGGLNWAFIGVDEAHR 617
Query: 569 IRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP 628
++N ++ + ++ HR+++TG P+QN L ELWSL F+ P K FE E
Sbjct: 618 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKG 677
Query: 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQ 688
G YA+ L + P+LLRR+K DV LP K E +L ++ Q
Sbjct: 678 REYG-YAS---------------LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ 721
Query: 689 RAVYRAFLASSEVEQILDGSRNSLYG-IDVM---RKICNHPDLLEREQSCQIPDYGNPE- 743
+ Y+ ++ + + + GS+ S G +++M +K CNH L++ + + Y E
Sbjct: 722 KQYYK-WILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEF--YNKQEA 778
Query: 744 -----RSE-KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTP 797
RS K+ ++ ++L +++G+RVL+F+Q +MLDIL +L + ++R+DG
Sbjct: 779 LQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 838
Query: 798 VKQRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAW 856
+ R +D +N S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA
Sbjct: 839 GELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAH 898
Query: 857 RIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
RIGQK+ V +YRL+T+G++EE + R K L + +++
Sbjct: 899 RIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQ 937
Score = 165 (63.1 bits), Expect = 4.7e-59, Sum P(4) = 4.7e-59
Identities = 40/95 (42%), Positives = 53/95 (55%)
Query: 383 PPFVTLEGGLKIPESIFNN----LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVL 438
P FV L+ K P I + L DYQ G+ WL C+ I+ DEMGLGKTIQ +
Sbjct: 460 PRFVALK---KQPSYIGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTI 516
Query: 439 SFLGAL-HFSNMYKPSIVVCPVTLLRQWKREAEKW 472
SFL L H +Y P ++V P++ L W+RE + W
Sbjct: 517 SFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTW 551
Score = 50 (22.7 bits), Expect = 4.7e-59, Sum P(4) = 4.7e-59
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 161 EHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTV 197
E DK D + ++ PK K K + + ++K K +
Sbjct: 168 ERDKSSCDETESDYEPKNKVKSRKPQNRSKAKNGKKI 204
Score = 48 (22.0 bits), Expect = 7.5e-59, Sum P(4) = 7.5e-59
Identities = 23/110 (20%), Positives = 40/110 (36%)
Query: 91 STKEDNDIDDGDSTEQDGREDEKSAVQASPNDM-------TLQHALTADRLKSLKKTKAQ 143
S+ D+ + G +E + ++ VQA P + + L R LKK + Q
Sbjct: 49 SSDSDSGSESGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQ 108
Query: 144 LVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQ 193
+ + G + + + D E R K K ++ Q G Q
Sbjct: 109 QQQHPASSNSG-SEEDSSSSEDSDDSSNEVKRKKHKDEDWQMSGSGSPSQ 157
Score = 47 (21.6 bits), Expect = 4.7e-59, Sum P(4) = 4.7e-59
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 1128 VGAGLERQFEVASSSANVARFADTRTSRSSKNASDVQPE 1166
VG L QF+VA+ S + R+SKN ++ PE
Sbjct: 1010 VGDELLSQFKVANFSNMDEDDIELEPERNSKNWEEIIPE 1048
Score = 45 (20.9 bits), Expect = 3.6e-46, Sum P(3) = 3.6e-46
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 484 SAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWD 525
SA G SSD + GS DSD S++ + D
Sbjct: 26 SASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESD 67
Score = 43 (20.2 bits), Expect = 5.9e-46, Sum P(3) = 5.9e-46
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 497 SSDTDNDGEGSHDSDYEGNLSSRN 520
SSD+D+ E S+ E + S N
Sbjct: 49 SSDSDSGSESGSQSESESDTSREN 72
Score = 42 (19.8 bits), Expect = 2.7e-46, Sum P(4) = 2.7e-46
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 488 LGFRKKRAKSSDTDNDGEGSHDSD 511
LG +K++ SS+ ++D E +D+D
Sbjct: 205 LGQKKRQIDSSEEEDDEE-DYDND 227
Score = 40 (19.1 bits), Expect = 1.2e-45, Sum P(3) = 1.2e-45
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 495 AKSSDTDNDGEGSHDSDYEGNLSSRNPKK 523
+ +S ++ D S DSD N R K
Sbjct: 115 SSNSGSEEDSSSSEDSDDSSNEVKRKKHK 143
Score = 40 (19.1 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 486 QDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
Q+ + R K D+ H S+ EG++ R+
Sbjct: 1594 QESRYYSDREKHRKLDDHRSRDHRSNLEGSIKDRS 1628
Score = 40 (19.1 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 1106 SAGKVLSSSELLARIR--GNQENAVGAGLERQFEVASSSANVARFADTRTSRSSK 1158
S+GK++ +LL R+R GN+ + + + R ++ + +F R S K
Sbjct: 785 SSGKLILLDKLLIRLRERGNRV-LIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 838
Score = 39 (18.8 bits), Expect = 6.5e-58, Sum P(4) = 6.5e-58
Identities = 16/80 (20%), Positives = 37/80 (46%)
Query: 101 GDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGI 160
G +E + E +KS+ + +D ++ + + + ++ K K K L + I S
Sbjct: 159 GSDSESEEEERDKSSCDETESDYEPKNKVKSRKPQNRSKAKNGK-KILGQKKRQIDSSEE 217
Query: 161 EHDKFIQDLVKEEHRPKRKS 180
E D+ +D ++ +R++
Sbjct: 218 EDDE--EDYDNDKRSSRRQA 235
Score = 38 (18.4 bits), Expect = 8.3e-58, Sum P(4) = 8.3e-58
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 244 QQPGPSNKQNVPDEQEARSNDPFSASVDR 272
Q P SN + D + +D S V R
Sbjct: 111 QHPASSNSGSEEDSSSSEDSDDSSNEVKR 139
>UNIPROTKB|A7Z019 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9913
"Bos taurus" [GO:0071565 "nBAF complex" evidence=ISS] [GO:0071564
"npBAF complex" evidence=ISS] [GO:0060347 "heart trabecula
formation" evidence=IEA] [GO:0060318 "definitive erythrocyte
differentiation" evidence=IEA] [GO:0048730 "epidermis
morphogenesis" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0043388
"positive regulation of DNA binding" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0030900
"forebrain development" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0001835 "blastocyst hatching" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001570
"vasculogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000792
"heterochromatin" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0006351 GO:GO:0003682 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0071565 GO:GO:0000902
GO:GO:0004386 GO:GO:0001570 GO:GO:0035116 GO:GO:0005719
GO:GO:0030902 GO:GO:0048730 GO:GO:0000977 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633
InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347 GO:GO:0043966
GO:GO:0043388 KO:K11647 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
OrthoDB:EOG418BMJ EMBL:BC153216 IPI:IPI00693529
RefSeq:NP_001099084.1 UniGene:Bt.27590 ProteinModelPortal:A7Z019
SMR:A7Z019 STRING:A7Z019 PRIDE:A7Z019 GeneID:414274 KEGG:bta:414274
CTD:6597 InParanoid:A7Z019 NextBio:20818684 ArrayExpress:A7Z019
Uniprot:A7Z019
Length = 1606
Score = 331 (121.6 bits), Expect = 5.7e-59, Sum P(6) = 5.7e-59
Identities = 73/200 (36%), Positives = 115/200 (57%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQSCQ---------IPDYGNPERSEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S + S K +++ ++L
Sbjct: 1023 GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1082
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+ H+VLLF Q ++ I+E + G++Y R+DG T + R L+ +N S+ F
Sbjct: 1083 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 1142
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 1143 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1202
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 1203 EEKILAAAKYKLNVDQKVIQ 1222
Score = 290 (107.1 bits), Expect = 5.7e-59, Sum P(6) = 5.7e-59
Identities = 72/215 (33%), Positives = 116/215 (53%)
Query: 532 LRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRI 589
LRS + +L+TTYE + L + W Y ++DEGHR++N + +++ V R+
Sbjct: 840 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 899
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QNKL ELW+L +F+ P FE F P + G + ++
Sbjct: 900 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG----EKVDLNEEETIL 955
Query: 650 VV--LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------SE 700
++ L ++ P+LLRR+K +V AQLP+K E+V+ C ++ QR +YR A SE
Sbjct: 956 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 1015
Query: 701 VEQILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
++ G +L I +RKICNHP + + E+S
Sbjct: 1016 KDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEES 1050
Score = 147 (56.8 bits), Expect = 5.7e-59, Sum P(6) = 5.7e-59
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L YQ G++WL L+ GI+ DEMGLGKTIQ ++ + L + P +++ P++
Sbjct: 746 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLS 805
Query: 461 LLRQWKREAEKWYPS 475
L W E +KW PS
Sbjct: 806 TLSNWAYEFDKWAPS 820
Score = 46 (21.3 bits), Expect = 5.7e-59, Sum P(6) = 5.7e-59
Identities = 31/135 (22%), Positives = 55/135 (40%)
Query: 49 PHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRR-VSTKEDNDIDDGDSTEQD 107
P K +DP QE+ Y + I + + L + TK ++
Sbjct: 346 PIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQ 405
Query: 108 GREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQ 167
R+ + V D L+ AL A K+ K++K Q ++E IT K +E Q
Sbjct: 406 -RQLRQEVVVCMRRDTALETALNA---KAYKRSKRQSLREAR-----ITEK-LEK----Q 451
Query: 168 DLVKEEHRPKRKSKE 182
+++E + ++K +E
Sbjct: 452 QKIEQERKRRQKHQE 466
Score = 45 (20.9 bits), Expect = 5.7e-59, Sum P(6) = 5.7e-59
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 244 QQPGPSNKQNVPDEQEARSNDPFSASVDR--ALRMMSEAAQ 282
+QP P+ +P E++ + DP S V A ++ A Q
Sbjct: 664 EQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQ 704
Score = 42 (19.8 bits), Expect = 4.6e-48, Sum P(4) = 4.6e-48
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVC 457
G + GD + TI+ L L L+F + +VVC
Sbjct: 382 GSLAGD-LRTKATIE-LKALRLLNFQRQLRQEVVVC 415
Score = 42 (19.8 bits), Expect = 0.00023, Sum P(4) = 0.00023
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 491 RKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
R RAK +D+D E + D G+ S +
Sbjct: 1577 RGSRAKPVVSDDDSEEEQEEDRSGSGSEED 1606
Score = 40 (19.1 bits), Expect = 5.7e-59, Sum P(6) = 5.7e-59
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 987 GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEA-LRQSR 1045
G + E++ +L+S+F + D EE+ EE+ S+ R+ + ++ R
Sbjct: 1502 GSLIYEDSIVLQSVFTSVR-QKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGR 1560
Query: 1046 MLRSRD 1051
+++D
Sbjct: 1561 KEKAQD 1566
Score = 39 (18.8 bits), Expect = 3.7e-58, Sum P(5) = 3.7e-58
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 96 NDIDDGDSTEQDGREDEKSAVQASPNDMTLQ 126
+D ++ S E++ E+E+ A P + ++
Sbjct: 647 SDSEESGSEEEEEEEEEEQPQPAQPPTLPVE 677
Score = 37 (18.1 bits), Expect = 1.2e-58, Sum P(6) = 1.2e-58
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 1016 MNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTW 1058
M A EE+ L + + +R EA R R ++ +P+W
Sbjct: 1264 MIARHEEEFDLFMRMD-LDRRREEARNPKRKPRLMEEDELPSW 1305
>MGI|MGI:88192 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IMP;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=ISO] [GO:0000792 "heterochromatin"
evidence=IDA] [GO:0000902 "cell morphogenesis" evidence=IMP]
[GO:0000977 "RNA polymerase II regulatory region sequence-specific
DNA binding" evidence=IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=ISO] [GO:0001570
"vasculogenesis" evidence=IMP] [GO:0001701 "in utero embryonic
development" evidence=IMP] [GO:0001832 "blastocyst growth"
evidence=IMP] [GO:0001835 "blastocyst hatching" evidence=IMP]
[GO:0001889 "liver development" evidence=IMP] [GO:0002039 "p53
binding" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IDA] [GO:0003713 "transcription
coactivator activity" evidence=ISO] [GO:0003714 "transcription
corepressor activity" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin" evidence=IDA]
[GO:0005726 "perichromatin fibrils" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=TAS] [GO:0006334 "nucleosome assembly" evidence=TAS]
[GO:0006337 "nucleosome disassembly" evidence=ISO] [GO:0006338
"chromatin remodeling" evidence=ISO;IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IMP] [GO:0007403 "glial cell fate determination"
evidence=IMP] [GO:0007507 "heart development" evidence=IMP]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=IPI]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IMP] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA;TAS]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016818 "hydrolase
activity, acting on acid anhydrides, in phosphorus-containing
anhydrides" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IMP;TAS] [GO:0019827 "stem cell maintenance" evidence=IMP]
[GO:0022008 "neurogenesis" evidence=IDA] [GO:0030198 "extracellular
matrix organization" evidence=IMP] [GO:0030216 "keratinocyte
differentiation" evidence=IMP] [GO:0030308 "negative regulation of
cell growth" evidence=ISO] [GO:0030900 "forebrain development"
evidence=IMP] [GO:0030902 "hindbrain development" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=ISO] [GO:0032403
"protein complex binding" evidence=ISO] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IMP] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISO] [GO:0043388
"positive regulation of DNA binding" evidence=IGI] [GO:0043923
"positive regulation by host of viral transcription" evidence=ISO]
[GO:0043966 "histone H3 acetylation" evidence=IMP] [GO:0045892
"negative regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=ISO] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IGI;ISO;IMP] [GO:0047485
"protein N-terminus binding" evidence=ISO] [GO:0048562 "embryonic
organ morphogenesis" evidence=IMP] [GO:0048730 "epidermis
morphogenesis" evidence=IMP] [GO:0050681 "androgen receptor
binding" evidence=ISO] [GO:0051091 "positive regulation of
sequence-specific DNA binding transcription factor activity"
evidence=ISO] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IMP] [GO:0060347 "heart trabecula formation" evidence=IGI]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=ISO] [GO:0070577 "histone acetyl-lysine binding"
evidence=ISO] [GO:0071564 "npBAF complex" evidence=ISO;IDA]
[GO:0071565 "nBAF complex" evidence=IDA] [GO:0071778 "WINAC
complex" evidence=ISO] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 MGI:MGI:88192
GO:GO:0005524 GO:GO:0003714 GO:GO:0030216 GO:GO:0045944
GO:GO:0030198 GO:GO:0030900 GO:GO:0001889 EMBL:CH466522
GO:GO:0006351 GO:GO:0003682 GO:GO:0016887 GO:GO:0006338
GO:GO:0000122 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0000902 GO:GO:0004386 GO:GO:0001570 GO:GO:0035116
GO:GO:0005719 GO:GO:0030902 GO:GO:0048730 GO:GO:0000977
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0006334 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 KO:K11647 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 GO:GO:0001835
GO:GO:0007403 GO:GO:0006346 GO:GO:0010424 GO:GO:0060318
GO:GO:0048562 GO:GO:0001832 GO:GO:0005726 HOGENOM:HOG000172363
HOVERGEN:HBG056636 GO:GO:0035887 OrthoDB:EOG418BMJ CTD:6597
EMBL:AK147285 EMBL:AK160825 EMBL:AK166837 EMBL:BC079560
IPI:IPI00875789 IPI:IPI00955124 RefSeq:NP_001167549.1
RefSeq:NP_001167550.1 RefSeq:NP_035547.2 UniGene:Mm.286593
ProteinModelPortal:Q3TKT4 SMR:Q3TKT4 DIP:DIP-40650N DIP:DIP-59249N
IntAct:Q3TKT4 MINT:MINT-1958721 STRING:Q3TKT4 PhosphoSite:Q3TKT4
PaxDb:Q3TKT4 PRIDE:Q3TKT4 Ensembl:ENSMUST00000034707
Ensembl:ENSMUST00000098948 Ensembl:ENSMUST00000174008 GeneID:20586
KEGG:mmu:20586 UCSC:uc009omd.2 UCSC:uc009ome.2 InParanoid:Q3TUD7
NextBio:298883 Bgee:Q3TKT4 Genevestigator:Q3TKT4 Uniprot:Q3TKT4
Length = 1613
Score = 331 (121.6 bits), Expect = 5.9e-59, Sum P(6) = 5.9e-59
Identities = 73/200 (36%), Positives = 115/200 (57%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQSCQ---------IPDYGNPERSEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S + S K +++ ++L
Sbjct: 1031 GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+ H+VLLF Q ++ I+E + G++Y R+DG T + R L+ +N S+ F
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 1150
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQ 1230
Score = 290 (107.1 bits), Expect = 5.9e-59, Sum P(6) = 5.9e-59
Identities = 72/215 (33%), Positives = 116/215 (53%)
Query: 532 LRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRI 589
LRS + +L+TTYE + L + W Y ++DEGHR++N + +++ V R+
Sbjct: 848 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 907
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QNKL ELW+L +F+ P FE F P + G + ++
Sbjct: 908 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG----EKVDLNEEETIL 963
Query: 650 VV--LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------SE 700
++ L ++ P+LLRR+K +V AQLP+K E+V+ C ++ QR +YR A SE
Sbjct: 964 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 1023
Query: 701 VEQILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
++ G +L I +RKICNHP + + E+S
Sbjct: 1024 KDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEES 1058
Score = 147 (56.8 bits), Expect = 5.9e-59, Sum P(6) = 5.9e-59
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L YQ G++WL L+ GI+ DEMGLGKTIQ ++ + L + P +++ P++
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLS 813
Query: 461 LLRQWKREAEKWYPS 475
L W E +KW PS
Sbjct: 814 TLSNWAYEFDKWAPS 828
Score = 46 (21.3 bits), Expect = 5.9e-59, Sum P(6) = 5.9e-59
Identities = 31/135 (22%), Positives = 55/135 (40%)
Query: 49 PHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRR-VSTKEDNDIDDGDSTEQD 107
P K +DP QE+ Y + I + + L + TK ++
Sbjct: 354 PIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQ 413
Query: 108 GREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQ 167
R+ + V D L+ AL A K+ K++K Q ++E IT K +E Q
Sbjct: 414 -RQLRQEVVVCMRRDTALETALNA---KAYKRSKRQSLREAR-----ITEK-LEK----Q 459
Query: 168 DLVKEEHRPKRKSKE 182
+++E + ++K +E
Sbjct: 460 QKIEQERKRRQKHQE 474
Score = 45 (20.9 bits), Expect = 5.9e-59, Sum P(6) = 5.9e-59
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 244 QQPGPSNKQNVPDEQEARSNDPFSASVDR--ALRMMSEAAQ 282
+QP P+ +P E++ + DP S V A ++ A Q
Sbjct: 672 EQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQ 712
Score = 44 (20.5 bits), Expect = 1.7e-29, Sum P(6) = 1.7e-29
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 742 PERSEKMKVVAQVLKVWKDQGHRVL--LFAQTQQMLDILESF-LIASGYEYRRM 792
P ++KMK + + +KD R L +F Q ++ E + LI +++++
Sbjct: 1423 PNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKI 1476
Score = 42 (19.8 bits), Expect = 2.0e-47, Sum P(5) = 2.0e-47
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVC 457
G + GD + TI+ L L L+F + +VVC
Sbjct: 390 GSLAGD-LRTKATIE-LKALRLLNFQRQLRQEVVVC 423
Score = 42 (19.8 bits), Expect = 0.00024, Sum P(4) = 0.00024
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 491 RKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
R RAK +D+D E + D G+ S +
Sbjct: 1584 RGSRAKPVVSDDDSEEEQEEDRSGSGSEED 1613
Score = 40 (19.1 bits), Expect = 5.9e-59, Sum P(6) = 5.9e-59
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 987 GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEA-LRQSR 1045
G + E++ +L+S+F + D EE+ EE+ S+ R+ + ++ R
Sbjct: 1509 GSLIYEDSIVLQSVFTSVR-QKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGR 1567
Query: 1046 MLRSRD 1051
+++D
Sbjct: 1568 KEKAQD 1573
Score = 40 (19.1 bits), Expect = 2.4e-58, Sum P(6) = 2.4e-58
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 167 QDLVKEEHRPKRKSKEAQKPGKDRSKQQK 195
QD + + H+P E P R Q K
Sbjct: 66 QDNMHQMHKPMESMHEKGMPDDPRYNQMK 94
Score = 39 (18.8 bits), Expect = 3.8e-58, Sum P(5) = 3.8e-58
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 96 NDIDDGDSTEQDGREDEKSAVQASPNDMTLQ 126
+D ++ S E++ E+E+ A P + ++
Sbjct: 655 SDSEESGSEEEEEEEEEEQPQPAQPPTLPVE 685
Score = 37 (18.1 bits), Expect = 1.2e-58, Sum P(6) = 1.2e-58
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 1016 MNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTW 1058
M A EE+ L + + +R EA R R ++ +P+W
Sbjct: 1272 MIARHEEEFDLFMRMD-LDRRREEARNPKRKPRLMEEDELPSW 1313
>UNIPROTKB|G3V790 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4, isoform
CRA_b" species:10116 "Rattus norvegicus" [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000902 "cell morphogenesis" evidence=IEA] [GO:0000977 "RNA
polymerase II regulatory region sequence-specific DNA binding"
evidence=IEA] [GO:0001570 "vasculogenesis" evidence=IEA]
[GO:0001832 "blastocyst growth" evidence=IEA] [GO:0001835
"blastocyst hatching" evidence=IEA] [GO:0001889 "liver development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0005726 "perichromatin fibrils" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IEA]
[GO:0007403 "glial cell fate determination" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0030198 "extracellular matrix organization" evidence=IEA]
[GO:0030216 "keratinocyte differentiation" evidence=IEA]
[GO:0030900 "forebrain development" evidence=IEA] [GO:0030902
"hindbrain development" evidence=IEA] [GO:0035116 "embryonic
hindlimb morphogenesis" evidence=IEA] [GO:0035887 "aortic smooth
muscle cell differentiation" evidence=IEA] [GO:0043388 "positive
regulation of DNA binding" evidence=IEA] [GO:0043966 "histone H3
acetylation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048562 "embryonic organ morphogenesis" evidence=IEA]
[GO:0048730 "epidermis morphogenesis" evidence=IEA] [GO:0060318
"definitive erythrocyte differentiation" evidence=IEA] [GO:0060347
"heart trabecula formation" evidence=IEA] [GO:0071564 "npBAF
complex" evidence=IEA] [GO:0071565 "nBAF complex" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GeneTree:ENSGT00550000074659
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:CH473993
UniGene:Rn.23417 Ensembl:ENSRNOT00000013165 Uniprot:G3V790
Length = 1614
Score = 331 (121.6 bits), Expect = 5.9e-59, Sum P(6) = 5.9e-59
Identities = 73/200 (36%), Positives = 115/200 (57%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQSCQ---------IPDYGNPERSEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S + S K +++ ++L
Sbjct: 1031 GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+ H+VLLF Q ++ I+E + G++Y R+DG T + R L+ +N S+ F
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 1150
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQ 1230
Score = 290 (107.1 bits), Expect = 5.9e-59, Sum P(6) = 5.9e-59
Identities = 72/215 (33%), Positives = 116/215 (53%)
Query: 532 LRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRI 589
LRS + +L+TTYE + L + W Y ++DEGHR++N + +++ V R+
Sbjct: 848 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 907
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QNKL ELW+L +F+ P FE F P + G + ++
Sbjct: 908 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG----EKVDLNEEETIL 963
Query: 650 VV--LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------SE 700
++ L ++ P+LLRR+K +V AQLP+K E+V+ C ++ QR +YR A SE
Sbjct: 964 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 1023
Query: 701 VEQILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
++ G +L I +RKICNHP + + E+S
Sbjct: 1024 KDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEES 1058
Score = 147 (56.8 bits), Expect = 5.9e-59, Sum P(6) = 5.9e-59
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L YQ G++WL L+ GI+ DEMGLGKTIQ ++ + L + P +++ P++
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLS 813
Query: 461 LLRQWKREAEKWYPS 475
L W E +KW PS
Sbjct: 814 TLSNWAYEFDKWAPS 828
Score = 46 (21.3 bits), Expect = 5.9e-59, Sum P(6) = 5.9e-59
Identities = 31/135 (22%), Positives = 55/135 (40%)
Query: 49 PHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRR-VSTKEDNDIDDGDSTEQD 107
P K +DP QE+ Y + I + + L + TK ++
Sbjct: 354 PIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQ 413
Query: 108 GREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQ 167
R+ + V D L+ AL A K+ K++K Q ++E IT K +E Q
Sbjct: 414 -RQLRQEVVVCMRRDTALETALNA---KAYKRSKRQSLREAR-----ITEK-LEK----Q 459
Query: 168 DLVKEEHRPKRKSKE 182
+++E + ++K +E
Sbjct: 460 QKIEQERKRRQKHQE 474
Score = 45 (20.9 bits), Expect = 5.9e-59, Sum P(6) = 5.9e-59
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 244 QQPGPSNKQNVPDEQEARSNDPFSASVDR--ALRMMSEAAQ 282
+QP P+ +P E++ + DP S V A ++ A Q
Sbjct: 672 EQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQ 712
Score = 42 (19.8 bits), Expect = 2.0e-47, Sum P(5) = 2.0e-47
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVC 457
G + GD + TI+ L L L+F + +VVC
Sbjct: 390 GSLAGD-LRTKATIE-LKALRLLNFQRQLRQEVVVC 423
Score = 40 (19.1 bits), Expect = 5.9e-59, Sum P(6) = 5.9e-59
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 987 GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEA-LRQSR 1045
G + E++ +L+S+F + D EE+ EE+ S+ R+ + ++ R
Sbjct: 1510 GSLIYEDSIVLQSVFTSVR-QKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGR 1568
Query: 1046 MLRSRD 1051
+++D
Sbjct: 1569 KEKAQD 1574
Score = 40 (19.1 bits), Expect = 2.4e-58, Sum P(6) = 2.4e-58
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 167 QDLVKEEHRPKRKSKEAQKPGKDRSKQQK 195
QD + + H+P E P R Q K
Sbjct: 66 QDNMHQMHKPMESMHEKGMPDDPRYNQMK 94
Score = 39 (18.8 bits), Expect = 3.9e-58, Sum P(5) = 3.9e-58
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 96 NDIDDGDSTEQDGREDEKSAVQASPNDMTLQ 126
+D ++ S E++ E+E+ A P + ++
Sbjct: 655 SDSEESGSEEEEEEEEEEQPQPAQPPTLPVE 685
Score = 39 (18.8 bits), Expect = 0.00045, Sum P(4) = 0.00045
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 491 RKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
R RAK +D+D + + D G+ S +
Sbjct: 1585 RGSRAKPVVSDDDSDEEQEEDRSGSGSEED 1614
Score = 37 (18.1 bits), Expect = 1.2e-58, Sum P(6) = 1.2e-58
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 1016 MNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTW 1058
M A EE+ L + + +R EA R R ++ +P+W
Sbjct: 1272 MIARHEEEFDLFMRMD-LDRRREEARNPKRKPRLMEEDELPSW 1313
>UNIPROTKB|F1M6Y4 [details] [associations]
symbol:Smarca4 "Transcription activator BRG1" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0005726
"perichromatin fibrils" evidence=IEA] [GO:0006338 "chromatin
remodeling" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0007403 "glial cell fate
determination" evidence=IEA] [GO:0008134 "transcription factor
binding" evidence=IEA] [GO:0010424 "DNA methylation on cytosine
within a CG sequence" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0030198 "extracellular matrix
organization" evidence=IEA] [GO:0030216 "keratinocyte
differentiation" evidence=IEA] [GO:0030900 "forebrain development"
evidence=IEA] [GO:0030902 "hindbrain development" evidence=IEA]
[GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA]
[GO:0035887 "aortic smooth muscle cell differentiation"
evidence=IEA] [GO:0043388 "positive regulation of DNA binding"
evidence=IEA] [GO:0043966 "histone H3 acetylation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048562 "embryonic organ
morphogenesis" evidence=IEA] [GO:0048730 "epidermis morphogenesis"
evidence=IEA] [GO:0060318 "definitive erythrocyte differentiation"
evidence=IEA] [GO:0060347 "heart trabecula formation" evidence=IEA]
[GO:0071564 "npBAF complex" evidence=IEA] [GO:0071565 "nBAF
complex" evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10 SUPFAM:SSF47370
PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792 GO:GO:0060347
GO:GO:0043966 GO:GO:0043388 InterPro:IPR013999 InterPro:IPR014012
InterPro:IPR006562 Pfam:PF07529 SMART:SM00573 PROSITE:PS51204
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 GO:GO:0005726
GO:GO:0035887 IPI:IPI00951882 Ensembl:ENSRNOT00000060927
ArrayExpress:F1M6Y4 Uniprot:F1M6Y4
Length = 1618
Score = 331 (121.6 bits), Expect = 6.0e-59, Sum P(6) = 6.0e-59
Identities = 73/200 (36%), Positives = 115/200 (57%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQSCQ---------IPDYGNPERSEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S + S K +++ ++L
Sbjct: 1031 GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+ H+VLLF Q ++ I+E + G++Y R+DG T + R L+ +N S+ F
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 1150
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQ 1230
Score = 290 (107.1 bits), Expect = 6.0e-59, Sum P(6) = 6.0e-59
Identities = 72/215 (33%), Positives = 116/215 (53%)
Query: 532 LRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRI 589
LRS + +L+TTYE + L + W Y ++DEGHR++N + +++ V R+
Sbjct: 848 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 907
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QNKL ELW+L +F+ P FE F P + G + ++
Sbjct: 908 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG----EKVDLNEEETIL 963
Query: 650 VV--LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------SE 700
++ L ++ P+LLRR+K +V AQLP+K E+V+ C ++ QR +YR A SE
Sbjct: 964 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 1023
Query: 701 VEQILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
++ G +L I +RKICNHP + + E+S
Sbjct: 1024 KDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEES 1058
Score = 147 (56.8 bits), Expect = 6.0e-59, Sum P(6) = 6.0e-59
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L YQ G++WL L+ GI+ DEMGLGKTIQ ++ + L + P +++ P++
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLS 813
Query: 461 LLRQWKREAEKWYPS 475
L W E +KW PS
Sbjct: 814 TLSNWAYEFDKWAPS 828
Score = 46 (21.3 bits), Expect = 6.0e-59, Sum P(6) = 6.0e-59
Identities = 31/135 (22%), Positives = 55/135 (40%)
Query: 49 PHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRR-VSTKEDNDIDDGDSTEQD 107
P K +DP QE+ Y + I + + L + TK ++
Sbjct: 354 PIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQ 413
Query: 108 GREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQ 167
R+ + V D L+ AL A K+ K++K Q ++E IT K +E Q
Sbjct: 414 -RQLRQEVVVCMRRDTALETALNA---KAYKRSKRQSLREAR-----ITEK-LEK----Q 459
Query: 168 DLVKEEHRPKRKSKE 182
+++E + ++K +E
Sbjct: 460 QKIEQERKRRQKHQE 474
Score = 45 (20.9 bits), Expect = 6.0e-59, Sum P(6) = 6.0e-59
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 244 QQPGPSNKQNVPDEQEARSNDPFSASVDR--ALRMMSEAAQ 282
+QP P+ +P E++ + DP S V A ++ A Q
Sbjct: 672 EQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQ 712
Score = 42 (19.8 bits), Expect = 2.0e-47, Sum P(5) = 2.0e-47
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVC 457
G + GD + TI+ L L L+F + +VVC
Sbjct: 390 GSLAGD-LRTKATIE-LKALRLLNFQRQLRQEVVVC 423
Score = 40 (19.1 bits), Expect = 6.0e-59, Sum P(6) = 6.0e-59
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 987 GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEA-LRQSR 1045
G + E++ +L+S+F + D EE+ EE+ S+ R+ + ++ R
Sbjct: 1514 GSLIYEDSIVLQSVFTSVR-QKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGR 1572
Query: 1046 MLRSRD 1051
+++D
Sbjct: 1573 KEKAQD 1578
Score = 40 (19.1 bits), Expect = 2.5e-58, Sum P(6) = 2.5e-58
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 167 QDLVKEEHRPKRKSKEAQKPGKDRSKQQK 195
QD + + H+P E P R Q K
Sbjct: 66 QDNMHQMHKPMESMHEKGMPDDPRYNQMK 94
Score = 39 (18.8 bits), Expect = 3.9e-58, Sum P(5) = 3.9e-58
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 96 NDIDDGDSTEQDGREDEKSAVQASPNDMTLQ 126
+D ++ S E++ E+E+ A P + ++
Sbjct: 655 SDSEESGSEEEEEEEEEEQPQPAQPPTLPVE 685
Score = 39 (18.8 bits), Expect = 0.00046, Sum P(4) = 0.00046
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 491 RKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
R RAK +D+D + + D G+ S +
Sbjct: 1589 RGSRAKPVVSDDDSDEEQEEDRSGSGSEED 1618
Score = 37 (18.1 bits), Expect = 1.2e-58, Sum P(6) = 1.2e-58
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 1016 MNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTW 1058
M A EE+ L + + +R EA R R ++ +P+W
Sbjct: 1272 MIARHEEEFDLFMRMD-LDRRREEARNPKRKPRLMEEDELPSW 1313
>UNIPROTKB|J9P6Y8 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
OMA:AETHENE EMBL:AAEX03002026 Ensembl:ENSCAFT00000043995
Uniprot:J9P6Y8
Length = 1782
Score = 536 (193.7 bits), Expect = 6.1e-59, Sum P(4) = 6.1e-59
Identities = 134/399 (33%), Positives = 222/399 (55%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHR 568
Y G+++SRN + + + + R + +L+TTYE L L +K L + W + +DE HR
Sbjct: 543 YLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEIL--LKDKAFLGGLNWAFIGVDEAHR 600
Query: 569 IRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP 628
++N ++ + ++ HR+++TG P+QN L ELWSL F+ P K FE E
Sbjct: 601 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKG 660
Query: 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQ 688
G YA+ L + P+LLRR+K DV LP K E +L ++ Q
Sbjct: 661 REYG-YAS---------------LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ 704
Query: 689 RAVYRAFLASSEVEQILDGSRNSLYG-IDVM---RKICNHPDLLEREQSCQIPDYGNPE- 743
+ Y+ ++ + + + GS+ S G +++M +K CNH L++ + + Y E
Sbjct: 705 KQYYK-WILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEF--YNKQEA 761
Query: 744 -----RSE-KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTP 797
RS K+ ++ ++L +++G+RVL+F+Q +MLDIL +L + ++R+DG
Sbjct: 762 LQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 821
Query: 798 VKQRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAW 856
+ R +D +N S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA
Sbjct: 822 GELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAH 881
Query: 857 RIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
RIGQK+ V +YRL+T+G++EE + R K L + +++
Sbjct: 882 RIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQ 920
Score = 165 (63.1 bits), Expect = 6.1e-59, Sum P(4) = 6.1e-59
Identities = 40/95 (42%), Positives = 53/95 (55%)
Query: 383 PPFVTLEGGLKIPESIFNN----LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVL 438
P FV L+ K P I + L DYQ G+ WL C+ I+ DEMGLGKTIQ +
Sbjct: 443 PRFVALK---KQPSYIGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTI 499
Query: 439 SFLGAL-HFSNMYKPSIVVCPVTLLRQWKREAEKW 472
SFL L H +Y P ++V P++ L W+RE + W
Sbjct: 500 SFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTW 534
Score = 50 (22.7 bits), Expect = 6.1e-59, Sum P(4) = 6.1e-59
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 161 EHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTV 197
E DK D + ++ PK K K + + ++K K +
Sbjct: 151 ERDKSSCDETESDYEPKNKVKSRKPQNRSKAKNGKKI 187
Score = 48 (22.0 bits), Expect = 9.9e-59, Sum P(4) = 9.9e-59
Identities = 23/110 (20%), Positives = 40/110 (36%)
Query: 91 STKEDNDIDDGDSTEQDGREDEKSAVQASPNDM-------TLQHALTADRLKSLKKTKAQ 143
S+ D+ + G +E + ++ VQA P + + L R LKK + Q
Sbjct: 32 SSDSDSGSESGSQSESESDTSRENKVQAKPPKVDGAEFWKSSPSILAVQRSAMLKKQQQQ 91
Query: 144 LVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQ 193
+ + G + + + D E R K K ++ Q G Q
Sbjct: 92 QQQHPASSNSG-SEEDSSSSEDSDDSSNEVKRKKHKDEDWQMSGSGSPSQ 140
Score = 47 (21.6 bits), Expect = 6.1e-59, Sum P(4) = 6.1e-59
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 1128 VGAGLERQFEVASSSANVARFADTRTSRSSKNASDVQPE 1166
VG L QF+VA+ S + R+SKN ++ PE
Sbjct: 993 VGDELLSQFKVANFSNMDEDDIELEPERNSKNWEEIIPE 1031
Score = 45 (20.9 bits), Expect = 4.5e-46, Sum P(3) = 4.5e-46
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 484 SAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWD 525
SA G SSD + GS DSD S++ + D
Sbjct: 9 SASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESD 50
Score = 43 (20.2 bits), Expect = 7.2e-46, Sum P(3) = 7.2e-46
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 497 SSDTDNDGEGSHDSDYEGNLSSRN 520
SSD+D+ E S+ E + S N
Sbjct: 32 SSDSDSGSESGSQSESESDTSREN 55
Score = 42 (19.8 bits), Expect = 3.6e-46, Sum P(4) = 3.6e-46
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 488 LGFRKKRAKSSDTDNDGEGSHDSD 511
LG +K++ SS+ ++D E +D+D
Sbjct: 188 LGQKKRQIDSSEEEDDEE-DYDND 210
Score = 40 (19.1 bits), Expect = 1.5e-45, Sum P(3) = 1.5e-45
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 495 AKSSDTDNDGEGSHDSDYEGNLSSRNPKK 523
+ +S ++ D S DSD N R K
Sbjct: 98 SSNSGSEEDSSSSEDSDDSSNEVKRKKHK 126
Score = 40 (19.1 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 486 QDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
Q+ + R K D+ H S+ EG++ R+
Sbjct: 1665 QESRYYSDREKHRKLDDHRSRDHRSNLEGSIKDRS 1699
Score = 40 (19.1 bits), Expect = 3.2e-06, Sum P(3) = 3.2e-06
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 1106 SAGKVLSSSELLARIR--GNQENAVGAGLERQFEVASSSANVARFADTRTSRSSK 1158
S+GK++ +LL R+R GN+ + + + R ++ + +F R S K
Sbjct: 768 SSGKLILLDKLLIRLRERGNRV-LIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 821
Score = 39 (18.8 bits), Expect = 8.5e-58, Sum P(4) = 8.5e-58
Identities = 16/80 (20%), Positives = 37/80 (46%)
Query: 101 GDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGI 160
G +E + E +KS+ + +D ++ + + + ++ K K K L + I S
Sbjct: 142 GSDSESEEEERDKSSCDETESDYEPKNKVKSRKPQNRSKAKNGK-KILGQKKRQIDSSEE 200
Query: 161 EHDKFIQDLVKEEHRPKRKS 180
E D+ +D ++ +R++
Sbjct: 201 EDDE--EDYDNDKRSSRRQA 218
Score = 38 (18.4 bits), Expect = 1.1e-57, Sum P(4) = 1.1e-57
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 244 QQPGPSNKQNVPDEQEARSNDPFSASVDR 272
Q P SN + D + +D S V R
Sbjct: 94 QHPASSNSGSEEDSSSSEDSDDSSNEVKR 122
>RGD|621728 [details] [associations]
symbol:Smarca4 "SWI/SNF related, matrix associated, actin
dependent regulator of chromatin, subfamily a, member 4"
species:10116 "Rattus norvegicus" [GO:0000122 "negative regulation
of transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0000790 "nuclear chromatin" evidence=ISO] [GO:0000792
"heterochromatin" evidence=ISO] [GO:0000902 "cell morphogenesis"
evidence=ISO] [GO:0000977 "RNA polymerase II regulatory region
sequence-specific DNA binding" evidence=ISO] [GO:0001105 "RNA
polymerase II transcription coactivator activity" evidence=ISO]
[GO:0001570 "vasculogenesis" evidence=ISO] [GO:0001701 "in utero
embryonic development" evidence=ISO] [GO:0001832 "blastocyst
growth" evidence=ISO] [GO:0001835 "blastocyst hatching"
evidence=ISO] [GO:0001889 "liver development" evidence=ISO]
[GO:0002039 "p53 binding" evidence=ISO] [GO:0003407 "neural retina
development" evidence=ISO] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003713
"transcription coactivator activity" evidence=ISO] [GO:0003714
"transcription corepressor activity" evidence=ISO;ISS] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0005726 "perichromatin fibrils" evidence=ISO]
[GO:0006337 "nucleosome disassembly" evidence=ISO;IDA] [GO:0006338
"chromatin remodeling" evidence=ISO] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA;ISO] [GO:0007403 "glial cell fate determination"
evidence=ISO] [GO:0007507 "heart development" evidence=ISO]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0008134 "transcription factor binding" evidence=ISO]
[GO:0010424 "DNA methylation on cytosine within a CG sequence"
evidence=ISO] [GO:0016514 "SWI/SNF complex" evidence=ISO;IDA]
[GO:0016887 "ATPase activity" evidence=ISO] [GO:0019827 "stem cell
maintenance" evidence=ISO] [GO:0022008 "neurogenesis" evidence=ISO]
[GO:0030198 "extracellular matrix organization" evidence=ISO]
[GO:0030216 "keratinocyte differentiation" evidence=ISO]
[GO:0030308 "negative regulation of cell growth" evidence=ISO]
[GO:0030900 "forebrain development" evidence=ISO] [GO:0030902
"hindbrain development" evidence=ISO] [GO:0030957 "Tat protein
binding" evidence=ISO] [GO:0032403 "protein complex binding"
evidence=IDA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035887 "aortic smooth muscle cell
differentiation" evidence=ISO] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=IDA] [GO:0043388 "positive regulation of DNA
binding" evidence=ISO] [GO:0043923 "positive regulation by host of
viral transcription" evidence=ISO] [GO:0043966 "histone H3
acetylation" evidence=ISO] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0047485 "protein
N-terminus binding" evidence=ISO] [GO:0048562 "embryonic organ
morphogenesis" evidence=ISO] [GO:0048730 "epidermis morphogenesis"
evidence=ISO] [GO:0050681 "androgen receptor binding" evidence=ISO]
[GO:0051091 "positive regulation of sequence-specific DNA binding
transcription factor activity" evidence=ISO] [GO:0060318
"definitive erythrocyte differentiation" evidence=ISO] [GO:0060347
"heart trabecula formation" evidence=ISO] [GO:0060766 "negative
regulation of androgen receptor signaling pathway" evidence=ISO]
[GO:0070577 "histone acetyl-lysine binding" evidence=ISO]
[GO:0071564 "npBAF complex" evidence=ISO;ISS] [GO:0071565 "nBAF
complex" evidence=ISO;ISS] [GO:0071778 "WINAC complex"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 RGD:621728 GO:GO:0005524 GO:GO:0003714
GO:GO:0007399 GO:GO:0006355 GO:GO:0032403 GO:GO:0003677
GO:GO:0006351 GO:GO:0071564 GO:GO:0016514 GO:GO:0071565
GO:GO:0004386 GO:GO:0006337 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 HOGENOM:HOG000172363
HOVERGEN:HBG056636 EMBL:AJ504723 IPI:IPI00781891 UniGene:Rn.23417
ProteinModelPortal:Q8K1P7 SMR:Q8K1P7 IntAct:Q8K1P7 STRING:Q8K1P7
PhosphoSite:Q8K1P7 PRIDE:Q8K1P7 UCSC:RGD:621728 ArrayExpress:Q8K1P7
Genevestigator:Q8K1P7 Uniprot:Q8K1P7
Length = 1613
Score = 331 (121.6 bits), Expect = 7.4e-59, Sum P(6) = 7.4e-59
Identities = 73/200 (36%), Positives = 115/200 (57%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQSCQ---------IPDYGNPERSEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S + S K +++ ++L
Sbjct: 1031 GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+ H+VLLF Q ++ I+E + G++Y R+DG T + R L+ +N S+ F
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 1150
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQ 1230
Score = 290 (107.1 bits), Expect = 7.4e-59, Sum P(6) = 7.4e-59
Identities = 72/215 (33%), Positives = 116/215 (53%)
Query: 532 LRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRI 589
LRS + +L+TTYE + L + W Y ++DEGHR++N + +++ V R+
Sbjct: 848 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 907
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QNKL ELW+L +F+ P FE F P + G + ++
Sbjct: 908 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG----EKVDLNEEETIL 963
Query: 650 VV--LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------SE 700
++ L ++ P+LLRR+K +V AQLP+K E+V+ C ++ QR +YR A SE
Sbjct: 964 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 1023
Query: 701 VEQILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
++ G +L I +RKICNHP + + E+S
Sbjct: 1024 KDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEES 1058
Score = 147 (56.8 bits), Expect = 7.4e-59, Sum P(6) = 7.4e-59
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L YQ G++WL L+ GI+ DEMGLGKTIQ ++ + L + P +++ P++
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLS 813
Query: 461 LLRQWKREAEKWYPS 475
L W E +KW PS
Sbjct: 814 TLSNWAYEFDKWAPS 828
Score = 45 (20.9 bits), Expect = 7.4e-59, Sum P(6) = 7.4e-59
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 244 QQPGPSNKQNVPDEQEARSNDPFSASVDR--ALRMMSEAAQ 282
+QP P+ +P E++ + DP S V A ++ A Q
Sbjct: 672 EQPQPAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQ 712
Score = 45 (20.9 bits), Expect = 7.4e-59, Sum P(6) = 7.4e-59
Identities = 31/135 (22%), Positives = 55/135 (40%)
Query: 49 PHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRR-VSTKEDNDIDDGDSTEQD 107
P K +DP QE+ Y + I + + L + TK ++
Sbjct: 354 PIQKPRGLDPVEILQEREYRLQARIVHRIQELENLPGSLAGDLRTKATIELKALRLLNFQ 413
Query: 108 GREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQ 167
R+ + V D L+ AL A K+ K++K Q ++E IT K +E Q
Sbjct: 414 -RQLRQEVVVCMRRDTALETALNA---KAYKRSKRQSLREAR-----ITEK-LEK----Q 459
Query: 168 DLVKEEHRPKRKSKE 182
+++E + ++K +E
Sbjct: 460 QKIEQERKRRQKHQE 474
Score = 44 (20.5 bits), Expect = 2.1e-29, Sum P(6) = 2.1e-29
Identities = 13/54 (24%), Positives = 27/54 (50%)
Query: 742 PERSEKMKVVAQVLKVWKDQGHRVL--LFAQTQQMLDILESF-LIASGYEYRRM 792
P ++KMK + + +KD R L +F Q ++ E + LI +++++
Sbjct: 1423 PNLTKKMKKIVDAVIKYKDSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKI 1476
Score = 42 (19.8 bits), Expect = 2.0e-47, Sum P(5) = 2.0e-47
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVC 457
G + GD + TI+ L L L+F + +VVC
Sbjct: 390 GSLAGD-LRTKATIE-LKALRLLNFQRQLRQEVVVC 423
Score = 40 (19.1 bits), Expect = 7.4e-59, Sum P(6) = 7.4e-59
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 987 GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEA-LRQSR 1045
G + E++ +L+S+F + D EE+ EE+ S+ R+ + ++ R
Sbjct: 1509 GSLIYEDSIVLQSVFTSVR-QKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGR 1567
Query: 1046 MLRSRD 1051
+++D
Sbjct: 1568 KEKAQD 1573
Score = 40 (19.1 bits), Expect = 2.4e-58, Sum P(6) = 2.4e-58
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 167 QDLVKEEHRPKRKSKEAQKPGKDRSKQQK 195
QD + + H+P E P R Q K
Sbjct: 66 QDNMHQMHKPMESMHEKGMPDDPRYNQMK 94
Score = 39 (18.8 bits), Expect = 3.8e-58, Sum P(5) = 3.8e-58
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 96 NDIDDGDSTEQDGREDEKSAVQASPNDMTLQ 126
+D ++ S E++ E+E+ A P + ++
Sbjct: 655 SDSEESGSEEEEEEEEEEQPQPAQPPTLPVE 685
Score = 39 (18.8 bits), Expect = 0.00056, Sum P(4) = 0.00056
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 491 RKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
R RAK +D+D + + D G+ S +
Sbjct: 1584 RGSRAKPVVSDDDSDEEQEEDRSGSGSEED 1613
Score = 37 (18.1 bits), Expect = 1.5e-58, Sum P(6) = 1.5e-58
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 1016 MNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTW 1058
M A EE+ L + + +R EA R R ++ +P+W
Sbjct: 1272 MIARHEEEFDLFMRMD-LDRRREEARNPKRKPRLMEEDELPSW 1313
>ASPGD|ASPL0000047400 [details] [associations]
symbol:AN2285 species:162425 "Emericella nidulans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031011 "Ino80 complex" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0042766 "nucleosome
mobilization" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0043486 "histone exchange" evidence=IEA] [GO:0006348 "chromatin
silencing at telomere" evidence=IEA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0016584
"nucleosome positioning" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0043618 "regulation of transcription from RNA
polymerase II promoter in response to stress" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006355 GO:GO:0003677 EMBL:BN001307 GO:GO:0006281
GO:GO:0006351 GO:GO:0016568 GO:GO:0004386 EMBL:AACD01000038
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K11665 RefSeq:XP_659889.1 ProteinModelPortal:Q5BAZ5
STRING:Q5BAZ5 EnsemblFungi:CADANIAT00008977 GeneID:2874790
KEGG:ani:AN2285.2 HOGENOM:HOG000048482 OMA:LYFQMTR
OrthoDB:EOG41G6C8 Uniprot:Q5BAZ5
Length = 1612
Score = 349 (127.9 bits), Expect = 9.7e-59, Sum P(4) = 9.7e-59
Identities = 65/142 (45%), Positives = 97/142 (68%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K+ + ++L+ K GHRVLL+ Q +M+D++E +L Y+Y R+DG T ++ R
Sbjct: 1320 SGKLAKLDELLRELKAGGHRVLLYFQMTRMIDLMEEYLTYRNYKYCRLDGSTKLEDRRDT 1379
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+ ++ D+F+F+L+T+ GGLG NLT A+ VI +D DWNP+ D QA +RA R+GQ + V
Sbjct: 1380 VADFQQRPDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQV 1439
Query: 865 TVYRLITRGTIEEKVYHRQIYK 886
TVYRLITR TIEE++ R + K
Sbjct: 1440 TVYRLITRSTIEERIRKRALQK 1461
Score = 253 (94.1 bits), Expect = 9.7e-59, Sum P(4) = 9.7e-59
Identities = 72/233 (30%), Positives = 112/233 (48%)
Query: 512 YEGNLSSRN--PKKWDLL-INRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHR 568
Y GN R K WD I SE +L+T+Y+ + L + V+W Y +LDE
Sbjct: 878 YWGNAKDRKILRKFWDRKHITYTKESEFHVLVTSYQLVVLDAQYFQKVKWQYMILDEAQA 937
Query: 569 IRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP 628
I++ + +R+++TG PIQN + ELW+L F+ P F F+
Sbjct: 938 IKSSQSSRWKSLLGFHCRNRLLLTGTPIQNNMQELWALLHFIMPTLFDSHDEFSEWFSKD 997
Query: 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQ 688
I +N L R ++L+ P++LRR+K V +L K E +FC LT Q
Sbjct: 998 IESHAQSNTK-LNEDQLRRLHMILK----PFMLRRVKKHVQQELGDKVEKDVFCDLTYRQ 1052
Query: 689 RAVY---RAFLASSE-VEQILDGSRN---SLYGIDVM-RKICNHPDLLEREQS 733
RA+Y R ++ + +E+ G +L + + RK+CNHPDL ER ++
Sbjct: 1053 RALYTNLRNRVSIMDLIEKAAVGDETDSTTLMNLVMQFRKVCNHPDLFERAET 1105
Score = 166 (63.5 bits), Expect = 9.7e-59, Sum P(4) = 9.7e-59
Identities = 39/109 (35%), Positives = 62/109 (56%)
Query: 390 GGLKI--PESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQ---VLSFLGAL 444
G ++I P + L +YQ G+ WL L+ Q GI+ DEMGLGKTIQ V+++L +
Sbjct: 784 GDIEISQPTMLTAKLKEYQLKGLNWLVNLYEQGINGILADEMGLGKTIQSISVMAYLAEV 843
Query: 445 HFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKK 493
H N++ P +V+ P + L W++E K+ P+ V +A+D +K
Sbjct: 844 H--NIWGPFLVIAPASTLHNWQQEITKFVPNIKVLPYWGNAKDRKILRK 890
Score = 37 (18.1 bits), Expect = 9.7e-59, Sum P(4) = 9.7e-59
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 299 DGPTRPFQRLKTPFRMPQSEESEV 322
+G T P + L+ P R+ +E+E+
Sbjct: 273 NGVTEPPKILRPPRRIMSEKETEM 296
>ZFIN|ZDB-GENE-030131-5964 [details] [associations]
symbol:smarca2 "SWI/SNF related, matrix
associated, actin dependent regulator of chromatin, subfamily a,
member 2" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0016818 "hydrolase activity, acting on acid
anhydrides, in phosphorus-containing anhydrides" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001487 InterPro:IPR001650
InterPro:IPR006576 InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271
Pfam:PF00439 Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503
PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297 SMART:SM00490
SMART:SM00592 SMART:SM00951 ZFIN:ZDB-GENE-030131-5964 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 CTD:6595
HOVERGEN:HBG056636 EMBL:BC060676 IPI:IPI00483012 RefSeq:NP_997881.1
UniGene:Dr.93531 ProteinModelPortal:Q6P9P2 SMR:Q6P9P2 STRING:Q6P9P2
GeneID:334032 KEGG:dre:334032 InParanoid:Q6P9P2 NextBio:20810237
ArrayExpress:Q6P9P2 Uniprot:Q6P9P2
Length = 1568
Score = 330 (121.2 bits), Expect = 9.8e-59, Sum P(5) = 9.8e-59
Identities = 75/200 (37%), Positives = 116/200 (58%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQSCQ----IPD--YGNPE---RSEKMKVVAQVLK 756
G++ + I ++KICNHP + + E+S P+ P+ S K +++ ++L
Sbjct: 1003 GAKTLMNTIMQLKKICNHPYMFQHIEESFAEHLGFPNGIISGPDLYRASGKFELLDRILP 1062
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNS-SDVF 815
K HRVLLF Q ++ ILE + + Y R+DG T + R L+ ++N S F
Sbjct: 1063 KLKATNHRVLLFCQMTSLMTILEDYFGYRNFLYLRLDGTTKSEDRAMLLKKFNEEGSQYF 1122
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ V+IFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 1123 IFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1182
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 1183 EEKILAAAKYKLNVDQKVIQ 1202
Score = 281 (104.0 bits), Expect = 9.8e-59, Sum P(5) = 9.8e-59
Identities = 73/232 (31%), Positives = 119/232 (51%)
Query: 512 YEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRN 571
Y+G S R L+ ++ + +LITTYE + L + W Y ++DEGHR++N
Sbjct: 806 YKGTPSMRRS-----LVPQLRSGKFNVLITTYEYIIKDKHILAKIRWKYMIVDEGHRMKN 860
Query: 572 PNAEISLVCKQLQTV-HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIT 630
+ +++ V R+++TG P+QNKL ELW+L +F+ P FE F P
Sbjct: 861 HHCKLTQVLNTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFA 920
Query: 631 VGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRA 690
+ G L L ++ P+LLRR+K +V +QLP+K E+V+ C ++ Q+
Sbjct: 921 MTG--ERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSAIQKV 978
Query: 691 VYR-----AFLAS--SEVEQILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
+YR L + SE ++ G +L I ++KICNHP + + E+S
Sbjct: 979 LYRHMQGKGILLTDGSEKDKKGKGGAKTLMNTIMQLKKICNHPYMFQHIEES 1030
Score = 147 (56.8 bits), Expect = 9.8e-59, Sum P(5) = 9.8e-59
Identities = 29/79 (36%), Positives = 43/79 (54%)
Query: 398 IFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVV 456
I L YQ G++W+ L+ GI+ DEMGLGKTIQ + + L + P +++
Sbjct: 722 INGTLKQYQIQGLEWMVSLYNNNLNGILADEMGLGKTIQTIGLITYLMELKRLNGPYLII 781
Query: 457 CPVTLLRQWKREAEKWYPS 475
P++ L W E +KW PS
Sbjct: 782 VPLSTLSNWVYELDKWAPS 800
Score = 51 (23.0 bits), Expect = 1.5e-24, Sum P(4) = 1.5e-24
Identities = 22/84 (26%), Positives = 40/84 (47%)
Query: 482 HDSAQDLGFRKKRAKSSDTD-NDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLI 540
H +AQ +KK+ K + D EG +G N + +L + +V+++E+G ++
Sbjct: 550 HKAAQAAKEKKKKRKKKKKEAGDAEGMGAIGPDGEPIDENSQMSELPV-KVIQTETGKVL 608
Query: 541 --TTYEQLRLLGEKLLDVEWGYAV 562
T + L E L++ GY V
Sbjct: 609 QGTDAPKSSQL-EAWLEMNPGYEV 631
Score = 49 (22.3 bits), Expect = 9.8e-59, Sum P(5) = 9.8e-59
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 133 RLKSLKKTK--AQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEA 183
+L KK K A L+++ + +T EH K Q +++ + K+K KEA
Sbjct: 519 KLIDQKKDKRLAYLLQQTDEYVANLTELVYEH-KAAQAAKEKKKKRKKKKKEA 570
Score = 48 (22.0 bits), Expect = 1.2e-58, Sum P(5) = 1.2e-58
Identities = 33/157 (21%), Positives = 62/157 (39%)
Query: 49 PHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDG 108
P K + +DP QE+ Y +L+A +A + L + D+ + E
Sbjct: 333 PIQKPQGLDPVELLQEREY-RLQA------RIAHRIQELENLPGSLPPDLRTKATVELKA 385
Query: 109 -------REDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIE 161
R+ V D TL+ AL + K+ K++K Q ++E +T K +E
Sbjct: 386 LRLLNFQRQLRLDVVACMRRDTTLETALNS---KAYKRSKRQTLREAR-----MTEK-LE 436
Query: 162 HDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTVS 198
+ I+ K + + + KD + +++S
Sbjct: 437 KQQKIEQERKRRQKHQEYLNSILQHAKDFKEYHRSIS 473
Score = 45 (20.9 bits), Expect = 9.8e-59, Sum P(5) = 9.8e-59
Identities = 13/59 (22%), Positives = 28/59 (47%)
Query: 987 GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSR 1045
G ++ E++ +L+S+F + A + D+E+ EE++ V + + R R
Sbjct: 1469 GSQIYEDSIVLQSVFKSARQKIAREESDDESDDDDEEDESEEESKSVKVKIKLSKRDER 1527
Score = 44 (20.5 bits), Expect = 3.2e-58, Sum P(5) = 3.2e-58
Identities = 9/33 (27%), Positives = 20/33 (60%)
Query: 163 DKFIQDLVK--EEHRPKRKSKEAQKPGKDRSKQ 193
D+++ +L + EH+ + +KE +K K + K+
Sbjct: 537 DEYVANLTELVYEHKAAQAAKEKKKKRKKKKKE 569
>SGD|S000000966 [details] [associations]
symbol:CHD1 "Chromatin remodeler that regulates various
aspects of transcription" species:4932 "Saccharomyces cerevisiae"
[GO:0030874 "nucleolar chromatin" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0000182 "rDNA binding"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046695 "SLIK (SAGA-like)
complex" evidence=IDA] [GO:0000124 "SAGA complex" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0034401 "regulation of transcription by chromatin organization"
evidence=IGI;IMP] [GO:0043044 "ATP-dependent chromatin remodeling"
evidence=IDA] [GO:0001178 "regulation of transcriptional start site
selection at RNA polymerase II promoter" evidence=IGI] [GO:2000616
"negative regulation of histone H3-K9 acetylation" evidence=IMP]
[GO:0071441 "negative regulation of histone H3-K14 acetylation"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IGI;IPI] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0031490 "chromatin DNA binding"
evidence=IDA] [GO:0016584 "nucleosome positioning"
evidence=IGI;IDA] [GO:0003677 "DNA binding" evidence=IEA;IDA]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=IGI;IMP] [GO:0071894 "histone H2B conserved C-terminal
lysine ubiquitination" evidence=IMP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016568 "chromatin
modification" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0035064 "methylated histone residue binding" evidence=IDA]
[GO:2000104 "negative regulation of DNA-dependent DNA replication"
evidence=IGI] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IGI] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR009057 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 SGD:S000000966 Pfam:PF00385 GO:GO:0005739
GO:GO:0005524 GO:GO:2000104 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:BK006939 GO:GO:0000124 GO:GO:0046695 GO:GO:0004386
GO:GO:0034401 GO:GO:0006368 GO:GO:0035064 GO:GO:0031490
GO:GO:0042766 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043044
GO:GO:0016584 EMBL:U18917 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GO:GO:0006363 GO:GO:0008094 GO:GO:0006369
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
KO:K11367 HOGENOM:HOG000207917 PIR:S30818 RefSeq:NP_011091.1
PDB:2DY7 PDB:2DY8 PDB:2H1E PDB:2XB0 PDB:3MWY PDB:3TED PDBsum:2DY7
PDBsum:2DY8 PDBsum:2H1E PDBsum:2XB0 PDBsum:3MWY PDBsum:3TED
ProteinModelPortal:P32657 SMR:P32657 DIP:DIP-6362N IntAct:P32657
MINT:MINT-618890 STRING:P32657 PaxDb:P32657 PeptideAtlas:P32657
EnsemblFungi:YER164W GeneID:856911 KEGG:sce:YER164W CYGD:YER164w
OMA:IKWQFMA OrthoDB:EOG4TF3TB SABIO-RK:P32657
EvolutionaryTrace:P32657 NextBio:983353 Genevestigator:P32657
GermOnline:YER164W GO:GO:0030874 GO:GO:0000182 GO:GO:0071441
GO:GO:2000616 GO:GO:0001178 Uniprot:P32657
Length = 1468
Score = 541 (195.5 bits), Expect = 1.1e-58, Sum P(3) = 1.1e-58
Identities = 146/453 (32%), Positives = 230/453 (50%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSES----GLLITTYEQLRLLGEKLLDVEWGYAVLDEG 566
Y GN SR+ ++++ N + + +L+TTYE + +L ++W + +DE
Sbjct: 456 YMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEA 515
Query: 567 HRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFA 626
HR++N + + + +R+++TG P+QN + EL +L +F+ PG+ + + E
Sbjct: 516 HRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTI----DQEI- 570
Query: 627 VPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTE 686
+ N Q + L I P++LRR+K DV LP KTE +L L++
Sbjct: 571 ------DFENQDEEQEEYIHD----LHRRIQPFILRRLKKDVEKSLPSKTERILRVELSD 620
Query: 687 EQRAVYRAFLAS--SEVEQILDGSRNSLYGI-DVMRKICNHPDLLEREQSCQIPDYGNPE 743
Q Y+ L S + G SL I + ++K NHP L + + + +G+ +
Sbjct: 621 VQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGK 680
Query: 744 R------------SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRR 791
S KM ++ Q+L K GHRVL+F+Q +MLDIL +L G ++R
Sbjct: 681 MTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQR 740
Query: 792 MDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQ 850
+DG P QR ID +N+ S+ F+F+L+T+ GGLG NL A+ V+IFD DWNP D+Q
Sbjct: 741 LDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQ 800
Query: 851 ARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKN--PQQRRFFKAR-- 906
A RA RIGQK V VYRL+++ T+EE+V R K L I+ ++ K
Sbjct: 801 AMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEP 860
Query: 907 NMKDLFTLNDDGNGGS-TETSNIFSQLSEDVNV 938
N +L + G G T T N + ED+N+
Sbjct: 861 NAGELSAILKFGAGNMFTATDN--QKKLEDLNL 891
Score = 149 (57.5 bits), Expect = 1.1e-58, Sum P(3) = 1.1e-58
Identities = 39/134 (29%), Positives = 61/134 (45%)
Query: 345 IAREDTRLEENEDSRDSLDMSSYXXXXXXXXXXXXXXXPPFVTLEGGLKIPESIFNNLFD 404
+A E + +N ++ L S PPF+ +GG L D
Sbjct: 330 LAPEQVKHFQNRENSKILPQYSSNYTSQRPRFEKLSVQPPFI--KGG---------ELRD 378
Query: 405 YQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYK-PSIVVCPVTLLR 463
+Q G+ W+ L + GI+ DEMGLGKT+Q ++F+ L F+ P I+V P++ +
Sbjct: 379 FQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMP 438
Query: 464 QWKREAEKWYPSFH 477
W EKW P +
Sbjct: 439 AWLDTFEKWAPDLN 452
Score = 54 (24.1 bits), Expect = 1.1e-58, Sum P(3) = 1.1e-58
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 161 EHDKFIQDLVKEEH-RPKR--KSKEAQKPGKDRSKQQKTVSV 199
E D + +K+ +PK KSK KP K +S++Q TV +
Sbjct: 83 EDDDYYGSPIKQNRSKPKSRTKSKSKSKP-KSQSEKQSTVKI 123
Score = 48 (22.0 bits), Expect = 4.7e-58, Sum P(3) = 4.7e-58
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 94 EDNDIDDG-DSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKE 147
E+ + D G D E+D ED+ SP + + KS K K+Q K+
Sbjct: 66 EEGEEDSGEDEDEEDFEEDDD--YYGSPIKQNRSKPKSRTKSKSKSKPKSQSEKQ 118
Score = 46 (21.3 bits), Expect = 7.6e-58, Sum P(3) = 7.6e-58
Identities = 14/57 (24%), Positives = 29/57 (50%)
Query: 88 RRVSTKEDNDID-DGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQ 143
+R++T ED++ + + + E+D EDE +D + +R K +TK++
Sbjct: 51 KRMTTIEDDEDEFEDEEGEEDSGEDEDEE-DFEEDDDYYGSPIKQNRSKPKSRTKSK 106
Score = 45 (20.9 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 687 EQRAVYRAFLASSEVEQILD 706
E RA+Y+A L +++ILD
Sbjct: 1014 EVRALYKAILKFGNLKEILD 1033
Score = 45 (20.9 bits), Expect = 2.7e-05, Sum P(4) = 2.7e-05
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 483 DSAQDLGFR--KKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKK 523
DS D R ++RA+++D D+ GE + Y+ L N K+
Sbjct: 988 DSDDDSTSRSSRRRARANDMDSIGESEVRALYKAILKFGNLKE 1030
Score = 41 (19.5 bits), Expect = 2.2e-05, Sum P(4) = 2.2e-05
Identities = 30/121 (24%), Positives = 52/121 (42%)
Query: 461 LLRQWKREAEKWYPSFHVELLHDSAQDLG---FRKKRAKSSDTDNDG-EGSHDS--DYEG 514
+LR+ K++ EK PS +L D+ ++ K+ G +G H S +
Sbjct: 594 ILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMN 653
Query: 515 NL--SSRNPKKWDLLINRVLRSESGLLITTYEQLRLL----GEKLLDVEWGYAVLDEGHR 568
L +S +P +D RVL+ +T LR L G+ +L + + +GHR
Sbjct: 654 ELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHR 713
Query: 569 I 569
+
Sbjct: 714 V 714
Score = 41 (19.5 bits), Expect = 2.4e-05, Sum P(3) = 2.4e-05
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 491 RKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKW 524
RK+ AK T+ G+H +G+ +P+K+
Sbjct: 1401 RKEWAKILKTELTTIGNHIESQKGSSRKASPEKY 1434
Score = 40 (19.1 bits), Expect = 2.7e-05, Sum P(4) = 2.7e-05
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 518 SRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRN 571
S + K++D + R + T+ ++LR G+ L EW + E I N
Sbjct: 1364 SAHEKEYDSMDEEDCRHTMSAIRTSLKRLRRGGKSLDRKEWAKILKTELTTIGN 1417
Score = 38 (18.4 bits), Expect = 1.7e-46, Sum P(2) = 1.7e-46
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 489 GFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKK 523
G R+ ++ N S D D E N+ K+
Sbjct: 18 GLRRSHRAAAHQQNYFNDSDDEDDEDNIKQSRRKR 52
Score = 37 (18.1 bits), Expect = 2.2e-46, Sum P(2) = 2.2e-46
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 496 KSSDTDNDGEG-SHDSDYEGNLSSRNPKK 523
+ S D D E D DY G+ +N K
Sbjct: 70 EDSGEDEDEEDFEEDDDYYGSPIKQNRSK 98
>FB|FBgn0250786 [details] [associations]
symbol:Chd1 "Chromodomain-helicase-DNA-binding protein 1"
species:7227 "Drosophila melanogaster" [GO:0005705 "polytene
chromosome interband" evidence=IDA] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005703 "polytene chromosome puff" evidence=IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0035042 "fertilization,
exchange of chromosomal proteins" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0007476 "imaginal disc-derived wing
morphogenesis" evidence=IMP] InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298
SMART:SM00490 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
EMBL:AE014134 GO:GO:0006355 GO:GO:0003677 GO:GO:0048477
GO:GO:0006351 GO:GO:0003682 GO:GO:0004386 GO:GO:0007476
InterPro:IPR016197 SUPFAM:SSF54160 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598 GO:GO:0005703
InterPro:IPR025260 Pfam:PF13907 EMBL:L77907 PIR:T13944
RefSeq:NP_477197.1 ProteinModelPortal:Q7KU24 SMR:Q7KU24
STRING:Q7KU24 PaxDb:Q7KU24 PRIDE:Q7KU24 EnsemblMetazoa:FBtr0077674
GeneID:33505 KEGG:dme:Dmel_CG3733 UCSC:CG3733-RA CTD:1105
FlyBase:FBgn0250786 GeneTree:ENSGT00560000076896 InParanoid:Q7KU24
KO:K11367 OrthoDB:EOG45MKM5 PhylomeDB:Q7KU24 ChiTaRS:CHD1
GenomeRNAi:33505 NextBio:783939 Bgee:Q7KU24 GO:GO:0005705
GO:GO:0035042 Uniprot:Q7KU24
Length = 1883
Score = 542 (195.9 bits), Expect = 2.1e-58, Sum P(4) = 2.1e-58
Identities = 142/441 (32%), Positives = 232/441 (52%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEKLLD-VEWGYAVLDEGHRI 569
Y G++ SR ++++ R + ++TTYE + L ++ L ++W ++DE HR+
Sbjct: 608 YLGDIKSRELIQQYEWQFESSKRLKFNCILTTYE-IVLKDKQFLGTLQWAALLVDEAHRL 666
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629
+N ++ + K+ T HR+++TG P+QN L ELW+L F+ P K FE +
Sbjct: 667 KNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELWALLHFIMPDKFDTWENFEVQ----- 721
Query: 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQR 689
+ NA Y L + PY+LRR+K DV LP K E +L +T Q+
Sbjct: 722 ----HGNAE----DKGY---TRLHQQLEPYILRRVKKDVEKSLPAKVEQILRVEMTSLQK 770
Query: 690 AVYRAFLASS--EVEQILDGSRNSLYGIDV-MRKICNHPDLLEREQSCQIPDYGNPER-- 744
Y+ L + + + GS ++ I + ++K CNH L+ R ++ E
Sbjct: 771 QYYKWILTKNFDALRKGKRGSTSTFLNIVIELKKCCNHAALI-RPSEFELMGLQQDEALQ 829
Query: 745 -----SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
S K+ ++ ++L K+ GHRVL+F+Q +MLD+L +L + ++R+DG +
Sbjct: 830 TLLKGSGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQKRHFPFQRLDGSIKGE 889
Query: 800 QRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
R +D +N S F F+L+T+ GGLG NL A+ VIIFD DWNP D+QA+ RA RI
Sbjct: 890 MRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRI 949
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDG 918
GQK V +YRL+T ++EE++ R K L + ++ QR R + L+ G
Sbjct: 950 GQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVI----QRMDTTGRTV-----LDKSG 1000
Query: 919 NGGSTETSNIFSQLSEDVNVV 939
NG S+ SN F++ +D++ +
Sbjct: 1001 NGHSSN-SNPFNK--DDLSAI 1018
Score = 162 (62.1 bits), Expect = 2.1e-58, Sum P(4) = 2.1e-58
Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 395 PESIFNNLF--DYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH-FSNMYK 451
PE + + L DYQ G+ WL C+ I+ DEMGLGKTIQ + FL +L ++Y
Sbjct: 519 PEFLSSGLTLRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQTICFLYSLFKIHHLYG 578
Query: 452 PSIVVCPVTLLRQWKREAEKWYPSFHV 478
P + V P++ + W+RE + W P +V
Sbjct: 579 PFLCVVPLSTMTAWQREFDLWAPDMNV 605
Score = 52 (23.4 bits), Expect = 2.1e-58, Sum P(4) = 2.1e-58
Identities = 27/120 (22%), Positives = 40/120 (33%)
Query: 32 ENVAGXXXXXXXXXXXKPHDKSESIDP--SSTSQEKLYNKLRAVEFEIGAVASTVDHLRR 89
E AG + D S ++ P SS+S E+ R T +
Sbjct: 140 ETEAGQQQPASDASADESSDSSANVSPTSSSSSSEEEEEDYRPKRTRQARKPPTAAEKSK 199
Query: 90 VSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELS 149
+ N DS E D ED V + + A T R K ++ + + VK S
Sbjct: 200 KAPAPKNKKKTWDSDESDESEDSDDEVSTAQKR---KPAATTSRSKLAQQQQRRRVKPFS 256
Score = 52 (23.4 bits), Expect = 2.1e-58, Sum P(4) = 2.1e-58
Identities = 42/209 (20%), Positives = 69/209 (33%)
Query: 91 STKEDNDIDDGDSTEQDGR-----EDEKSAVQASPNDMTLQHA------LTADRLKSLKK 139
S+ D+D D DGR ED+ +V P A T D+ S
Sbjct: 38 SSGSDSDSDSSSGNSSDGRSSPEPEDKSLSVAGFPPTAAAAQADSKTNGFTDDQEDSSSD 97
Query: 140 TKAQLVKEL-SHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSK-EA--QKPGKDRSKQQK 195
+ + + P ++ I + L K E + ++ EA Q+P D S +
Sbjct: 98 GSSGSDSDSDAEGPSDQRNQSINNANTSSSLPKPEQNEEEDNETEAGQQQPASDASADES 157
Query: 196 TVSVXXXXXXXXXXXXXXXGFVETKRDELVRKGILTPFHKLKGFERCIQQPGPSNKQNVP 255
+ S E R + R+ P E+ + P P NK+
Sbjct: 158 SDSSANVSPTSSSSSSEEEE--EDYRPKRTRQARKPP----TAAEKSKKAPAPKNKKKTW 211
Query: 256 DEQEARSNDPFSASVDRALRMMSEAAQAR 284
D E+ ++ V A + A +R
Sbjct: 212 DSDESDESEDSDDEVSTAQKRKPAATTSR 240
Score = 48 (22.0 bits), Expect = 5.4e-58, Sum P(4) = 5.4e-58
Identities = 19/76 (25%), Positives = 30/76 (39%)
Query: 246 PGPSNKQNVPDEQEARSNDPFS-ASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRP 304
P P + +E EA P S AS D + +A P++ E + P R
Sbjct: 129 PKPEQNEEEDNETEAGQQQPASDASADES---SDSSANVSPTSSSSSSEEEEEDYRPKRT 185
Query: 305 FQRLKTPFRMPQSEES 320
Q K P +S+++
Sbjct: 186 RQARKPPTAAEKSKKA 201
Score = 47 (21.6 bits), Expect = 6.9e-46, Sum P(3) = 6.9e-46
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 489 GFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
GF + SS + G S DSD EG RN
Sbjct: 86 GFTDDQEDSSSDGSSGSDS-DSDAEGPSDQRN 116
Score = 47 (21.6 bits), Expect = 6.9e-46, Sum P(3) = 6.9e-46
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 479 ELLHDSAQDLGFRKK---RAKSSDTDNDGEGSHD----SDYEGNLSSRN 520
+ L++SA +G ++ R +++ TD+ G GS SD + + SS N
Sbjct: 3 QALNESANSIGSDEQDDTREEANGTDHSGSGSGSGSSGSDSDSDSSSGN 51
Score = 46 (21.3 bits), Expect = 1.3e-06, Sum P(3) = 1.3e-06
Identities = 31/171 (18%), Positives = 56/171 (32%)
Query: 835 RVIIFDPDWNPSTDVQARERAWRIG------QKQDVTVY---RLITRGTIEEKVYHRQIY 885
R +FD DW D + ++ G K D T+ +++ T + + Q
Sbjct: 1316 RAPVFDVDWGIEEDTKLLCGIYQYGIGSWEQMKLDPTLKLTDKILLNDTRKPQAKQLQTR 1375
Query: 886 KHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFS-------QLSEDVNV 938
+L I KN + + + R + + +D S S+ + D
Sbjct: 1376 AEYLLKIIKKNVELTKGGQRRQRRPRASRANDAKAASQSASSTIDAKPHDGEDAAGDART 1435
Query: 939 VGXXXXXXXXXXXXXAASANADDAVGDKENNLEIGSSRRKGKEKVDNIGDE 989
V +A A + GD + +R K DN G++
Sbjct: 1436 VAESSNSQVDPSTASPHNAPATEQHGDPAKKAKKSKARSKKTSASDNNGNK 1486
Score = 41 (19.5 bits), Expect = 2.9e-57, Sum P(4) = 2.9e-57
Identities = 22/78 (28%), Positives = 37/78 (47%)
Query: 51 DKSE-SIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGR 109
D+SE S D ST+Q++ K A + + RRV D DD D++++
Sbjct: 217 DESEDSDDEVSTAQKR---KPAATTSR--SKLAQQQQRRRVKPFSSEDSDDDDASKRCAT 271
Query: 110 EDEKSAV---QASPNDMT 124
+ +AV +AS ++ T
Sbjct: 272 RRKGAAVSYKEASEDEAT 289
Score = 41 (19.5 bits), Expect = 1.9e-45, Sum P(4) = 1.9e-45
Identities = 12/31 (38%), Positives = 15/31 (48%)
Query: 492 KKRAKSSDTDNDGEGSHDSDYE-GNLSSRNP 521
K + K+ D+D E S DSD E R P
Sbjct: 205 KNKKKTWDSDESDE-SEDSDDEVSTAQKRKP 234
Score = 38 (18.4 bits), Expect = 2.1e-58, Sum P(4) = 2.1e-58
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 978 KGKEKVDNIGDEVDEE 993
KGK++ D+ G + D E
Sbjct: 1147 KGKQQADDSGGDSDYE 1162
Score = 38 (18.4 bits), Expect = 6.0e-45, Sum P(3) = 6.0e-45
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 497 SSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLI 528
SS +D+D + S + +G SS P+ L +
Sbjct: 38 SSGSDSDSDSSSGNSSDGR-SSPEPEDKSLSV 68
Score = 37 (18.1 bits), Expect = 2.6e-58, Sum P(4) = 2.6e-58
Identities = 16/82 (19%), Positives = 29/82 (35%)
Query: 1102 GAGASAGK-VLSSSELLARIRGNQENAVGAGLERQFEVASSSANVARFADTRTSRSSKNA 1160
G G S+ + +L A ++ E E ++ + R A+TR A
Sbjct: 1000 GNGHSSNSNPFNKDDLSAILKFGAEELFKDEQEHDDDLVCDIDEILRRAETRNEDPEMPA 1059
Query: 1161 SDVQPEILIRQICTFMQQRGGS 1182
D+ + I F ++ S
Sbjct: 1060 DDLLSAFKVASIAAFEEEPSDS 1081
Score = 37 (18.1 bits), Expect = 6.8e-05, Sum P(4) = 6.8e-05
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 1032 QVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSS 1070
Q+ +RA + + ++ R D + T KSG + +S
Sbjct: 969 QIVERAKQKMVLDHLVIQRMDTTGRTVLDKSGNGHSSNS 1007
>UNIPROTKB|Q3B7N1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006200 "ATP catabolic
process" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0006974 "response to DNA damage stimulus" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 GO:GO:0006974 GO:GO:0016887
GO:GO:0006338 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
GO:GO:0008026 EMBL:BC107534 IPI:IPI00710168 RefSeq:NP_001032909.1
UniGene:Bt.18335 ProteinModelPortal:Q3B7N1 PRIDE:Q3B7N1
GeneID:524787 KEGG:bta:524787 CTD:9557 HOGENOM:HOG000030789
HOVERGEN:HBG077542 InParanoid:Q3B7N1 OrthoDB:EOG4SXNBV
NextBio:20874039 Uniprot:Q3B7N1
Length = 897
Score = 528 (190.9 bits), Expect = 2.1e-58, Sum P(2) = 2.1e-58
Identities = 135/370 (36%), Positives = 200/370 (54%)
Query: 532 LRSESG--LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRI 589
L+ ES +L+TTYE L W V+DE HR++N ++ + + V +
Sbjct: 142 LKQESRFHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSL 201
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG PIQN L EL+SL FV P +F E V V Y + + A
Sbjct: 202 LLTGTPIQNSLQELYSLLSFVEPD------LFSKE-QVEDFVQRYQD-----IEKESESA 249
Query: 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASS-EVEQILDGS 708
L L+ P+LLRR+KA+V +LP+KTE V++ ++ Q+ Y+A L + +
Sbjct: 250 SELYKLLQPFLLRRVKAEVATELPRKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAK 309
Query: 709 RNSLYGI-DVMRKICNHPDLLE--REQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRV 765
+ L + +RK +HP L + + +I D+ E S K+ ++ ++L +GHRV
Sbjct: 310 KVKLQNVLSQLRKCVDHPYLFDGVEPEPFEIGDH-LIEASGKLHLLDKLLAFLYSKGHRV 368
Query: 766 LLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGG 825
LLF+Q QMLDIL+ +L GY Y R+DG ++R I + +F F+L+T+ GG
Sbjct: 369 LLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNFGQQP-IFTFLLSTRAGG 427
Query: 826 LGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIY 885
+G NLT A+ VI FD D+NP D+QA RA RIGQ + V V RLI R T+EE VY +
Sbjct: 428 VGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAAS 487
Query: 886 KHFLTNKILK 895
K LTN I++
Sbjct: 488 KLQLTNTIIE 497
Score = 153 (58.9 bits), Expect = 2.1e-58, Sum P(2) = 2.1e-58
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 401 NLFDYQKVGVQWLWE-LHCQRAGGIIGDEMGLGKTIQVLS-FLGALHFSNMYKPSIVVCP 458
+L YQ GV WL + HCQ G I+GDEMGLGKT Q ++ F+ N P +++CP
Sbjct: 47 HLRPYQLQGVNWLAQCFHCQN-GCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCP 105
Query: 459 VTLLRQWKREAEKWYP 474
+++L WK E E++ P
Sbjct: 106 LSVLSNWKEEMERFAP 121
Score = 51 (23.0 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
Q++++KA MKDL ++ + N+ SQL + V+
Sbjct: 288 QKKYYKAILMKDLDAFENE-TAKKVKLQNVLSQLRKCVD 325
Score = 39 (18.8 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 483 DSAQDLGFRKKRAKSSDTDNDGEGSH 508
D+ +++ +RK +K T+ EG H
Sbjct: 475 DTVEEIVYRKAASKLQLTNTIIEGGH 500
>ZFIN|ZDB-GENE-060810-50 [details] [associations]
symbol:rad54b "RAD54 homolog B (S. cerevisiae)"
species:7955 "Danio rerio" [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-060810-50 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00550000074619 EMBL:BX511010
IPI:IPI00513586 Ensembl:ENSDART00000138496 Bgee:E9QHY4
Uniprot:E9QHY4
Length = 917
Score = 347 (127.2 bits), Expect = 2.2e-58, Sum P(3) = 2.2e-58
Identities = 77/224 (34%), Positives = 121/224 (54%)
Query: 745 SEKMKVVAQVLKVWK--DQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRM 802
S K+ V+ +L + ++ RV+L + Q LD+L+ GY++ R+DG TPV QR
Sbjct: 646 SGKLLVLTDLLSAIQHVNRTDRVVLVSNHTQTLDLLQDVCDQIGYKWCRLDGQTPVGQRQ 705
Query: 803 ALIDEYNNS-SDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQK 861
++D +N+ S F+ +L++K GG+G NL GA+ ++++D DWNP+ D+QA R WR GQK
Sbjct: 706 KIVDSFNSPHSSSFLLLLSSKAGGVGLNLIGASHLVLYDIDWNPANDIQAMARVWRDGQK 765
Query: 862 QDVTVYRLITRGTIEEKVYHRQIYKHFLTNKI--LKNPQQRRFFKARNMKDLFTLNDDGN 919
+ V +YR +T G+IEEK+Y RQ+ K L+ + L + F A ++DLF D N
Sbjct: 766 KTVHIYRFLTTGSIEEKIYQRQVSKQGLSGTVVDLTKKAEHISFSAEELRDLFRF--DPN 823
Query: 920 GGSTETSNIFSQLSEDVNVVGXXXXXXXXXXXXXAASANADDAV 963
+ + S D N G AD+A+
Sbjct: 824 TTCLTHDLLNCKCSGDGNTPGSVKESSEDTGRSCQLGRQADNAI 867
Score = 266 (98.7 bits), Expect = 2.2e-58, Sum P(3) = 2.2e-58
Identities = 60/196 (30%), Positives = 100/196 (51%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
+L+ +YE L ++L ++++G + DEGHR++N N + + L R+I+TG P+Q
Sbjct: 417 VLVISYEMLLRSVDRLKELDFGVLICDEGHRLKNSNIKTAGALTALSCTRRLILTGTPVQ 476
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N L E +S+ +FV PG LG + + PI + + + A L L
Sbjct: 477 NDLQEFYSIIEFVNPGILGTSAAYRKIYEEPILRSRQPSCTEEERCIGEERAAELFRLTG 536
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYG--- 714
+ LRR + +N L ++ E +FC TE Q +YR L++ + L GS +
Sbjct: 537 VFTLRRTQEIINQYLSERIEWTVFCKPTELQIRLYRVLLSTRPIRACLSGSHTYTHSPHL 596
Query: 715 --IDVMRKICNHPDLL 728
I+ ++K+CNHP LL
Sbjct: 597 VCINALKKLCNHPALL 612
Score = 128 (50.1 bits), Expect = 2.2e-58, Sum P(3) = 2.2e-58
Identities = 34/90 (37%), Positives = 47/90 (52%)
Query: 394 IPESIFNNLFDYQKVGVQWLWELH-----CQRAGGIIGDEMGLGKTIQVLSFLGALHFSN 448
I + N+L +QK GV +L+E R G I+ DEMGLGKT+Q + L L
Sbjct: 300 IDPHLTNHLRPHQKEGVVFLYECLMGMRLAGRCGAILADEMGLGKTLQCVCVLWTLLRQG 359
Query: 449 MY------KPSIVVCPVTLLRQWKREAEKW 472
Y K ++VVCP +L++ W E KW
Sbjct: 360 PYGGRPVMKRALVVCPGSLVKNWAAEFNKW 389
Score = 37 (18.1 bits), Expect = 1.7e-34, Sum P(3) = 1.7e-34
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 719 RKICNHPDLLEREQSC 734
RKI P L R+ SC
Sbjct: 501 RKIYEEPILRSRQPSC 516
>TAIR|locus:2173644 [details] [associations]
symbol:CHR1 "chromatin remodeling 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006349
"regulation of gene expression by genetic imprinting" evidence=IMP]
[GO:0044030 "regulation of DNA methylation" evidence=IMP]
[GO:0051574 "positive regulation of histone H3-K9 methylation"
evidence=IMP] [GO:0000786 "nucleosome" evidence=IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IMP] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0090241 "negative regulation of
histone H4 acetylation" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006344 "maintenance of chromatin silencing"
evidence=IMP] [GO:0009294 "DNA mediated transformation"
evidence=IMP] [GO:0032197 "transposition, RNA-mediated"
evidence=IMP] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IMP;RCA] [GO:0008283 "cell proliferation" evidence=RCA]
[GO:0016246 "RNA interference" evidence=RCA] [GO:0016572 "histone
phosphorylation" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677
GO:GO:0006351 GO:GO:0004003 GO:GO:0006349 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009294
EMBL:AB018119 GO:GO:0000786 GO:GO:0051574 GO:GO:0044030
GO:GO:0090241 GO:GO:0032197 EMBL:AF143940 EMBL:AY099638
EMBL:BT002161 EMBL:AY699010 EMBL:AY699011 IPI:IPI00524705
RefSeq:NP_201476.1 UniGene:At.28851 ProteinModelPortal:Q9XFH4
SMR:Q9XFH4 STRING:Q9XFH4 PaxDb:Q9XFH4 PRIDE:Q9XFH4
EnsemblPlants:AT5G66750.1 GeneID:836808 KEGG:ath:AT5G66750
TAIR:At5g66750 HOGENOM:HOG000172362 InParanoid:Q9XFH4 OMA:ETFYTAI
PhylomeDB:Q9XFH4 ProtClustDB:CLSN2686877 Genevestigator:Q9XFH4
GO:GO:0006344 GO:GO:0006346 Uniprot:Q9XFH4
Length = 764
Score = 517 (187.1 bits), Expect = 2.5e-58, Sum P(2) = 2.5e-58
Identities = 125/376 (33%), Positives = 207/376 (55%)
Query: 538 LLITTYEQLRLLGEKLL-DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPI 596
++IT+YE +++L W Y V+DEGHR++N ++ K L+ +++++TG P+
Sbjct: 306 IVITSYEVAMNDAKRILRHYPWKYVVIDEGHRLKNHKCKLLRELKHLKMDNKLLLTGTPL 365
Query: 597 QNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVV--LRD 654
QN LSELWSL +F+ P FE+ F N + + R VV L
Sbjct: 366 QNNLSELWSLLNFILPDIFTSHDEFESWFDFSEK---NKNEATKEEEEKRRAQVVSKLHG 422
Query: 655 LIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL-------DG 707
++ P++LRRMK DV LP+K E +++ ++T+ Q+ ++ L ++ +E L G
Sbjct: 423 ILRPFILRRMKCDVELSLPRKKEIIMYATMTDHQKK-FQEHLVNNTLEAHLGENAIRGQG 481
Query: 708 SRNSLYGIDV-MRKICNHPDLLERE--QSCQIPDYGN-PERSEKMKVVAQVLKVWKDQGH 763
+ L + + +RK CNHPDLL+ + S P + K +++ ++L H
Sbjct: 482 WKGKLNNLVIQLRKNCNHPDLLQGQIDGSYLYPPVEEIVGQCGKFRLLERLLVRLFANNH 541
Query: 764 RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNS-SDVFIFILTTK 822
+VL+F+Q ++LDI++ + G+E R+DG + +R I ++++ S IF+L+T+
Sbjct: 542 KVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTR 601
Query: 823 VGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHR 882
GGLG NLT A+ I++D DWNP D+QA +R RIGQ + V VYRL T +IE +V R
Sbjct: 602 AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLKR 661
Query: 883 QIYKHFLTNKILKNPQ 898
K L + ++ Q
Sbjct: 662 AYSKLKLEHVVIGQGQ 677
Score = 155 (59.6 bits), Expect = 2.5e-58, Sum P(2) = 2.5e-58
Identities = 35/93 (37%), Positives = 50/93 (53%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTL 461
L YQ GV+WL L GI+ D+MGLGKTIQ + FL L + + P +V+ P++
Sbjct: 202 LKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKGNGLDGPYLVIAPLST 261
Query: 462 LRQWKREAEKWYPSFHVELLH-DSAQDLGFRKK 493
L W E ++ PS + + H D Q R+K
Sbjct: 262 LSNWFNEIARFTPSINAIIYHGDKNQRDELRRK 294
Score = 40 (19.1 bits), Expect = 3.1e-46, Sum P(2) = 3.1e-46
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 140 TKAQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPK 177
T + E++ F I + DK +D ++ +H PK
Sbjct: 261 TLSNWFNEIARFTPSINAIIYHGDKNQRDELRRKHMPK 298
>UNIPROTKB|Q86WJ1 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IDA] [GO:0016887 "ATPase activity"
evidence=IMP] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=TAS] [GO:0006338 "chromatin remodeling" evidence=IDA]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0006200 "ATP
catabolic process" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 GO:GO:0005886
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003677 GO:GO:0006281 EMBL:AL356378 GO:GO:0006338
GO:GO:0004003 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589 PROSITE:PS51154
CTD:9557 HOVERGEN:HBG077542 OrthoDB:EOG4SXNBV EMBL:AF537213
EMBL:AK001342 EMBL:AK027631 EMBL:EF560738 EMBL:BC001171
EMBL:BC005038 EMBL:BC008649 EMBL:BC043501 EMBL:BC077717
EMBL:AK223496 IPI:IPI00329088 IPI:IPI00854584 IPI:IPI00890729
IPI:IPI00890749 RefSeq:NP_001243265.1 RefSeq:NP_001243266.1
RefSeq:NP_001243267.1 RefSeq:NP_004275.4 RefSeq:NP_078844.2
RefSeq:XP_003960255.1 RefSeq:XP_003960264.1 UniGene:Hs.191164
ProteinModelPortal:Q86WJ1 SMR:Q86WJ1 DIP:DIP-48933N IntAct:Q86WJ1
STRING:Q86WJ1 PhosphoSite:Q86WJ1 DMDM:311033359 PaxDb:Q86WJ1
PRIDE:Q86WJ1 Ensembl:ENST00000369258 Ensembl:ENST00000369259
Ensembl:ENST00000431239 Ensembl:ENST00000579763
Ensembl:ENST00000583055 GeneID:101060601 GeneID:9557
KEGG:hsa:101060601 KEGG:hsa:9557 UCSC:uc001epm.4 UCSC:uc001epo.4
UCSC:uc009wjh.3 GeneCards:GC01P146717 H-InvDB:HIX0000988
H-InvDB:HIX0028745 HGNC:HGNC:1916 HPA:HPA027789 HPA:HPA028670
MIM:613039 neXtProt:NX_Q86WJ1 PharmGKB:PA26452 InParanoid:Q86WJ1
OMA:TCQTIAL PhylomeDB:Q86WJ1 ChiTaRS:CHD1L GenomeRNAi:9557
NextBio:35849 ArrayExpress:Q86WJ1 Bgee:Q86WJ1 CleanEx:HS_CHD1L
Genevestigator:Q86WJ1 Uniprot:Q86WJ1
Length = 897
Score = 529 (191.3 bits), Expect = 2.6e-58, Sum P(2) = 2.6e-58
Identities = 133/370 (35%), Positives = 198/370 (53%)
Query: 532 LRSESG--LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRI 589
L+ ES +L+TTYE L W V+DE HR++N ++ + + V +
Sbjct: 140 LKQESRFHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSL 199
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG PIQN L EL+SL FV P +F E VG + + A
Sbjct: 200 LLTGTPIQNSLQELYSLLSFVEPD------LFSKE-----EVGDFIQRYQ-DIEKESESA 247
Query: 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASS-EVEQILDGS 708
L L+ P+LLRR+KA+V +LPKKTE V++ ++ Q+ Y+A L + +
Sbjct: 248 SELHKLLQPFLLRRVKAEVATELPKKTEVVIYHGMSALQKKYYKAILMKDLDAFENETAK 307
Query: 709 RNSLYGI-DVMRKICNHPDLLE--REQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRV 765
+ L I +RK +HP L + + ++ D+ E S K+ ++ ++L GHRV
Sbjct: 308 KVKLQNILSQLRKCVDHPYLFDGVEPEPFEVGDHLT-EASGKLHLLDKLLAFLYSGGHRV 366
Query: 766 LLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGG 825
LLF+Q QMLDIL+ ++ GY Y R+DG ++R I + +F+F+L+T+ GG
Sbjct: 367 LLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQP-IFVFLLSTRAGG 425
Query: 826 LGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIY 885
+G NLT A+ VI D D+NP D+QA RA RIGQ + V V RLI R T+EE VY +
Sbjct: 426 VGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAAS 485
Query: 886 KHFLTNKILK 895
K LTN I++
Sbjct: 486 KLQLTNMIIE 495
Score = 151 (58.2 bits), Expect = 2.6e-58, Sum P(2) = 2.6e-58
Identities = 32/76 (42%), Positives = 47/76 (61%)
Query: 401 NLFDYQKVGVQWLWE-LHCQRAGGIIGDEMGLGKTIQVLS-FLGALHFSNMYKPSIVVCP 458
+L YQ GV WL + HCQ G I+GDEMGLGKT Q ++ F+ N P +++CP
Sbjct: 45 HLRSYQLEGVNWLAQRFHCQN-GCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCP 103
Query: 459 VTLLRQWKREAEKWYP 474
+++L WK E +++ P
Sbjct: 104 LSVLSNWKEEMQRFAP 119
Score = 52 (23.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
Q++++KA MKDL ++ + NI SQL + V+
Sbjct: 286 QKKYYKAILMKDLDAFENE-TAKKVKLQNILSQLRKCVD 323
Score = 38 (18.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 21/84 (25%), Positives = 41/84 (48%)
Query: 483 DSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKK-WDLLINRVLRSESGLLI- 540
D+ +++ +RK +K T+ EG H + L ++ P DL ++ +L+ L+
Sbjct: 473 DTVEEIVYRKAASKLQLTNMIIEGGHFT-----LGAQKPAADADLQLSEILKFGLDKLLA 527
Query: 541 ---TTYEQLRL---LGEKLLDVEW 558
+T +++ L LGE D +W
Sbjct: 528 SEGSTMDEIDLESILGETK-DGQW 550
Score = 37 (18.1 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 11/60 (18%), Positives = 23/60 (38%)
Query: 984 DNIGDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQ 1043
+ +GD + +I K A+ +H + + E L ++ V AL++
Sbjct: 228 EEVGDFIQRYQDIEKESESASELHKLLQPFLLRRVKAEVATELPKKTEVVIYHGMSALQK 287
>FB|FBgn0022787 [details] [associations]
symbol:Hel89B "Helicase 89B" species:7227 "Drosophila
melanogaster" [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0004386 "helicase activity" evidence=NAS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0019730 "antimicrobial humoral response"
evidence=IMP] [GO:0006963 "positive regulation of antibacterial
peptide biosynthetic process" evidence=IMP] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0045087 "innate immune
response" evidence=IMP] [GO:0008063 "Toll signaling pathway"
evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003677 GO:GO:0042742 GO:GO:0045087
GO:GO:0004003 GO:GO:0019730 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008063 GO:GO:0006963
InterPro:IPR022707 Pfam:PF12054 EMBL:AF033104
ProteinModelPortal:Q71V44 SMR:Q71V44 STRING:Q71V44 PaxDb:Q71V44
PRIDE:Q71V44 FlyBase:FBgn0022787 InParanoid:Q71V44
OrthoDB:EOG4ZGMT5 ArrayExpress:Q71V44 Bgee:Q71V44 Uniprot:Q71V44
Length = 1924
Score = 315 (115.9 bits), Expect = 2.9e-58, Sum P(4) = 2.9e-58
Identities = 66/168 (39%), Positives = 96/168 (57%)
Query: 763 HRVLLFAQTQQMLDILESFLIAS---GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFIL 819
HR L+F Q + MLDI+E L+ Y R+DG P QR +++ +N+ + + +L
Sbjct: 1715 HRALIFCQLKAMLDIVEQDLLRRHLPSVTYLRLDGSVPASQRQDIVNNFNSDPSIDVLLL 1774
Query: 820 TTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKV 879
TT VGGLG NLTGA+ VI + DWNP D+QA +RA RIGQK+ V VYRLITR ++EEK+
Sbjct: 1775 TTMVGGLGLNLTGADTVIFVEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITRNSLEEKI 1834
Query: 880 YHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSN 927
Q +K N ++ + + +F L + G E+ +
Sbjct: 1835 MGLQKFKILTANTVVS--AENASLQTMGTSQIFDLFNGGKDKGAESGS 1880
Score = 285 (105.4 bits), Expect = 2.9e-58, Sum P(4) = 2.9e-58
Identities = 72/219 (32%), Positives = 109/219 (49%)
Query: 532 LRSESG----LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVH 587
LRS+ G L++ +Y+ +R + + + Y VLDEGH I+N + S K+L+ H
Sbjct: 1448 LRSDIGTKCNLVVASYDTVRKDIDFFSGIHFNYCVLDEGHIIKNGKTKSSKAIKRLKANH 1507
Query: 588 RIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYR 647
R+I++G PIQN + ELWSLFDF+ PG LG F F+ PI A +S +
Sbjct: 1508 RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFVQRFSRPILSSRDAKSSAKEQEAGVL 1567
Query: 648 CAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFL----------- 696
L ++P+LLRR+K DV LP K L C L+ Q +Y F
Sbjct: 1568 AMEALHRQVLPFLLRRVKEDVLKDLPPKITQDLLCELSPLQLRLYEDFSNKHLKDCLDKL 1627
Query: 697 ----ASSEVEQILDGSRNSLYGIDVMRKICNHPDLLERE 731
++S V + L + + ++ +CNHP L+ R+
Sbjct: 1628 GDSSSASMVTENLSAKTHIFQALRYLQNVCNHPKLVLRQ 1666
Score = 166 (63.5 bits), Expect = 2.9e-58, Sum P(4) = 2.9e-58
Identities = 44/124 (35%), Positives = 61/124 (49%)
Query: 393 KIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF----SN 448
K+P I L YQ+ G+ WLW L+ GI+ D+MGLGKT+Q + L H +N
Sbjct: 1342 KVPVPISVELRCYQQAGINWLWFLNKYNLHGILCDDMGLGKTLQTICILAGDHMHRQTAN 1401
Query: 449 MYK-PSIVVCPVTLLRQWKREAEKWYPSFHV-ELLHDSAQDLGFRKKRAKSSDTDNDGEG 506
+ PS+V+CP TL W E EK+ V LH +G K R+ N
Sbjct: 1402 LANLPSLVICPPTLTGHWVYEVEKFLDQGSVLRPLHYYGFPVGREKLRSDIGTKCNLVVA 1461
Query: 507 SHDS 510
S+D+
Sbjct: 1462 SYDT 1465
Score = 53 (23.7 bits), Expect = 1.6e-06, Sum P(3) = 1.6e-06
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 1131 GLERQFEVASSSANVARFADTRTSRSSKNASDVQPEILIRQICTFMQQR 1179
G E+QF V S + D ++S + A + E L RQ+ F+ +R
Sbjct: 1536 GTEKQF-VQRFSRPILSSRDAKSSAKEQEAGVLAMEALHRQVLPFLLRR 1583
Score = 40 (19.1 bits), Expect = 2.9e-58, Sum P(4) = 2.9e-58
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 124 TLQHALTADRLKSLKKTKAQLVKE 147
TL +ADR+KS K + Q VKE
Sbjct: 585 TLMTLTSADRVKSEPKDENQ-VKE 607
>DICTYBASE|DDB_G0293012 [details] [associations]
symbol:DDB_G0293012 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] InterPro:IPR000330 InterPro:IPR000626
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00213 SMART:SM00298
SMART:SM00490 dictyBase:DDB_G0293012 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006357 GO:GO:0004003
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
EMBL:AAFI02000199 InterPro:IPR022617 Pfam:PF11976
RefSeq:XP_629261.1 ProteinModelPortal:Q54CF8
EnsemblProtists:DDB0220643 GeneID:8628981 KEGG:ddi:DDB_G0293012
InParanoid:Q54CF8 OMA:IMINEDI Uniprot:Q54CF8
Length = 3071
Score = 560 (202.2 bits), Expect = 3.1e-58, Sum P(5) = 3.1e-58
Identities = 140/380 (36%), Positives = 211/380 (55%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
+L+TTYE + + V W +LDEGHRI+N +++ K ++T H II+TG P+Q
Sbjct: 1002 VLLTTYETIMSDHSSFVRVPWRALILDEGHRIKNDKSKVLSKLKSIKTEHSIILTGTPLQ 1061
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N + ELW++ +F+ P K F E++ S QVS L L+
Sbjct: 1062 NDMKELWTMLNFLDPDKFNSCQEFLDEYS------DLKEES--QVSK-------LHQLLS 1106
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSE--VEQILDGSRN--SLY 713
PYLLRRMK DV +P K E V+ L+ Q+ YRA L + + + + N L
Sbjct: 1107 PYLLRRMKEDVELSIPIKEETVIQVELSSTQKTYYRAILERNREFLSRGIKQKTNLPKLS 1166
Query: 714 GIDV-MRKICNHPDLLE-REQSC--QIPDYGNPERSE-------KMKVVAQVLKVWKDQG 762
I + +RK+CNHP L+ E+S Q G+ E E K+ +V ++L+ K +G
Sbjct: 1167 NIMIQIRKVCNHPFLIPGAEESIVKQEKIAGDEELGELLVKSSSKLVLVDKLLQRLKAEG 1226
Query: 763 HRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNS-SDVFIFILTT 821
H+VL+F+Q + L+ILE +L Y Y R+DG + R A ID + + ++ F+F+L+T
Sbjct: 1227 HQVLIFSQMVESLNILEDYLQYREYTYERLDGSIKSEVRQASIDRFQDKGANRFVFLLST 1286
Query: 822 KVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYH 881
+ GG+G NLT A+ VI+FD DWNP +D+QA+ R RIGQ +V VYRLITR T EE ++
Sbjct: 1287 RAGGVGINLTTADTVILFDSDWNPQSDLQAQARCHRIGQTNNVKVYRLITRNTYEEYLFE 1346
Query: 882 RQIYKHFLTNKILKNPQQRR 901
K L + +L + ++
Sbjct: 1347 CATKKLLLDHIVLSTNKDKK 1366
Score = 138 (53.6 bits), Expect = 3.1e-58, Sum P(5) = 3.1e-58
Identities = 39/105 (37%), Positives = 55/105 (52%)
Query: 401 NLFDYQKVGVQWL---WELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYK-PSIVV 456
+L ++Q G WL W HC+ + ++ DEMGLGKTIQ ++FL L S K P +VV
Sbjct: 897 SLKEFQVEGFLWLSYCW-YHCRSS--LLADEMGLGKTIQSIAFLQYLSQSVGIKGPFLVV 953
Query: 457 CPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKK-RAKSSDT 500
P++ L W +E KW + + S + GF K K DT
Sbjct: 954 APLSTLGNWHKEILKW-TKMKTLVFYGSQETRGFISKYEFKHKDT 997
Score = 69 (29.3 bits), Expect = 3.1e-58, Sum P(5) = 3.1e-58
Identities = 23/72 (31%), Positives = 33/72 (45%)
Query: 51 DKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGRE 110
DKS+S SS+S NK + + V + S+ ED D DD DS EQ+ E
Sbjct: 432 DKSKSNISSSSSSSNSNNKKKQLGVTKSRVPLKGKGKIKNSSSEDEDDDDDDSDEQNFDE 491
Query: 111 DEKSAVQASPND 122
+ A + S +
Sbjct: 492 SDDFASENSSEE 503
Score = 60 (26.2 bits), Expect = 1.3e-57, Sum P(5) = 1.3e-57
Identities = 22/106 (20%), Positives = 50/106 (47%)
Query: 84 VDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQ 143
++++R V K D+D GDS+ + + + A +A N MT++ + R + T AQ
Sbjct: 234 IENVRDV-IKSDDDQSFGDSSADEKKPNNSVAKKAPNNTMTIKATRSTSRTRG--GTTAQ 290
Query: 144 LVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKD 189
P ++G + I++ ++ E + + +E ++ ++
Sbjct: 291 STPPP---PPPSRTRGGKKAAHIKNNIESEESSEEEEEEEEEEDEE 333
Score = 57 (25.1 bits), Expect = 2.6e-57, Sum P(5) = 2.6e-57
Identities = 20/93 (21%), Positives = 37/93 (39%)
Query: 96 NDIDDGDSTEQDGREDEKS--AVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPK 153
N+I+ +S+E++ E+E+ VQAS + + + + + KK A K P
Sbjct: 312 NNIESEESSEEEEEEEEEEDEEVQASSSSSSSRRGVRQINATTAKKPPASKSKSQPSPPT 371
Query: 154 GITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKP 186
+ G + + E S E + P
Sbjct: 372 SNSLNGKRRRTPLNKIESESEESDESSDEYETP 404
Score = 49 (22.3 bits), Expect = 4.3e-58, Sum P(6) = 4.3e-58
Identities = 22/93 (23%), Positives = 39/93 (41%)
Query: 963 VGDKENNLEIGSSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEE 1022
V +K + E + K K+ + DE ++ KS D + D + D+E
Sbjct: 1929 VDEKSKDNEKSNDSEKSKDNEKSKDDEKSKDDE--KSKDDEKSQDDEKSKDD-EKSKDDE 1985
Query: 1023 KMRLEEQASQVAQRAAEALRQSRMLRSRDDISV 1055
K +LEE +Q E ++S+ S + S+
Sbjct: 1986 KSKLEE--NQDESTPMEVDKESKSTSSSEKQSI 2016
Score = 46 (21.3 bits), Expect = 3.5e-56, Sum P(5) = 3.5e-56
Identities = 10/44 (22%), Positives = 24/44 (54%)
Query: 93 KEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKS 136
K DN+ ++ + E++ E+E+ + D+ +++ D +KS
Sbjct: 202 KNDNEGENEEDEEEEEEEEEEEEEEEEEEDIYIENV--RDVIKS 243
Score = 45 (20.9 bits), Expect = 1.2e-55, Sum P(6) = 1.2e-55
Identities = 23/112 (20%), Positives = 41/112 (36%)
Query: 16 TSANPEDIERDVLAAAENVAGXXXXXXXXXXXKPHDK---SESIDPSSTSQEKLYNKLRA 72
T+ P D + + + E+ DK E D +S ++E +
Sbjct: 611 TTTTPVDKKDEQMKDTESTTTTTTTTTKNTESTSTDKVKDEEMTDINSKTKETIIKTETT 670
Query: 73 VEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMT 124
++ + G TV +TK + D D + D K+A + S N+ T
Sbjct: 671 IKEQDGP-KETV---AVATTKTTTTVKDDDKMKVDESSTTKTATEVS-NEAT 717
Score = 43 (20.2 bits), Expect = 3.1e-58, Sum P(5) = 3.1e-58
Identities = 26/94 (27%), Positives = 41/94 (43%)
Query: 1077 STVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQF 1136
+TV S PL+ S K +F+ +G G+ SS++L GNQ ++ G G Q
Sbjct: 1663 NTVNSLSNPPLKQRKSEKKSQFSGSLSGIG-GQ--SSNKLGG---GNQSSSSGGGSSGQ- 1715
Query: 1137 EVASSSANVARFADTRTSRSSKNASDVQPEILIR 1170
S N + ++S K D IL++
Sbjct: 1716 -----STNAQSIINASWNKSQK---DKFKSILLK 1741
Score = 43 (20.2 bits), Expect = 7.2e-56, Sum P(5) = 7.2e-56
Identities = 14/95 (14%), Positives = 44/95 (46%)
Query: 91 STKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSH 150
++ +N+ ++ ++ + E+E+ + ++ TL+ + D K + L + +
Sbjct: 134 NSSSNNNNNNNNNNNNNNEEEEEGKTEELQDEYTLESSDDDDTSKKSNNDEKPLPQPPVN 193
Query: 151 FPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQK 185
K +K +++D ++ EE + + +E ++
Sbjct: 194 --KNKPNKKLKNDNEGENEEDEEEEEEEEEEEEEE 226
Score = 43 (20.2 bits), Expect = 0.00051, Sum P(6) = 0.00051
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 498 SDTDNDGEGSHDSDY 512
SD+ +DG G D+D+
Sbjct: 1628 SDSSSDGGGGSDTDF 1642
Score = 41 (19.5 bits), Expect = 3.2e-46, Sum P(4) = 3.2e-46
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 491 RKKRAKSSDTDNDGEGSHDSDYE 513
+ K K DN+GE D + E
Sbjct: 194 KNKPNKKLKNDNEGENEEDEEEE 216
Score = 40 (19.1 bits), Expect = 3.1e-58, Sum P(5) = 3.1e-58
Identities = 20/85 (23%), Positives = 40/85 (47%)
Query: 113 KSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFI-QD--- 168
K+ +A+P + +++ + K+TKA K+++ F K + H+K +D
Sbjct: 790 KNESEANPFNYFSPDCTVIEKILAKKETKAGKSKKMTTFYL-CKWKTLPHEKSTWEDENI 848
Query: 169 LVKEEHRPKRKSKEAQKPGKDRSKQ 193
L+ EE + K A + D+ K+
Sbjct: 849 LITEEDQAAIKQFNANQLLLDQPKK 873
Score = 40 (19.1 bits), Expect = 6.2e-58, Sum P(5) = 6.2e-58
Identities = 21/73 (28%), Positives = 31/73 (42%)
Query: 1051 DDISVPTWTGK-SGTAGAPSSVRKKFGSTVGSQLIKPLEGSSSNKTGEFN---SFGAGAS 1106
DD V T + + P RK + S + + G SSNK G N S G G+S
Sbjct: 1654 DDQHVETLDNTVNSLSNPPLKQRKSEKKSQFSGSLSGIGGQSSNKLGGGNQSSSSGGGSS 1713
Query: 1107 -----AGKVLSSS 1114
A ++++S
Sbjct: 1714 GQSTNAQSIINAS 1726
Score = 40 (19.1 bits), Expect = 0.00094, Sum P(6) = 0.00094
Identities = 20/71 (28%), Positives = 32/71 (45%)
Query: 489 GFRKKRAKSSDTDNDGEGSHDSDYEGNLSS-RNPKKWD--LLINRVLRSESGLLITTYEQ 545
GF K SS+TD + + + ++ +E L + K+ + L L+SE I +
Sbjct: 1480 GFSKATFASSETDMNVDMNDENFWEKVLPDYKTVKQLEEKLASGSALQSEESRAIFVQDI 1539
Query: 546 LRLLGEKLLDV 556
L L K DV
Sbjct: 1540 LDLAQTKKDDV 1550
Score = 39 (18.8 bits), Expect = 2.0e-47, Sum P(5) = 2.0e-47
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 493 KRAKSSDTDNDGEGSHDSDYE 513
K + S D D+D + S + +++
Sbjct: 470 KNSSSEDEDDDDDDSDEQNFD 490
Score = 37 (18.1 bits), Expect = 4.3e-58, Sum P(6) = 4.3e-58
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 1070 SVRKKFGSTVGSQLIKPLEGSSSNKTGEFNSF 1101
S K S +Q KP SSS+ + N++
Sbjct: 2533 SSSKHSKSQSSNQSSKPFSNSSSSSSNNNNNY 2564
>UNIPROTKB|F1NHJ5 [details] [associations]
symbol:BTAF1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR000357
InterPro:IPR001650 InterPro:IPR016024 Pfam:PF00176 Pfam:PF00271
Pfam:PF02985 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
InterPro:IPR021133 PROSITE:PS50077 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 OMA:TKQEGAI
InterPro:IPR022707 Pfam:PF12054 GeneTree:ENSGT00630000089754
EMBL:AADN02046597 IPI:IPI00572097 Ensembl:ENSGALT00000011235
Uniprot:F1NHJ5
Length = 1845
Score = 347 (127.2 bits), Expect = 4.4e-58, Sum P(3) = 4.4e-58
Identities = 85/217 (39%), Positives = 121/217 (55%)
Query: 718 MRKICNHPDLLEREQ---SCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQM 774
+R I + P L +Q C + + G+ E + VVAQ HR+L+F Q + M
Sbjct: 1601 LRDIQHAPKLSALKQLLLDCGLGNGGSSESGTEA-VVAQ---------HRILIFCQLKSM 1650
Query: 775 LDILESFLIAS---GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLT 831
LDI+E L+ Y R+DG P QR +++ +NN + + +LTT VGGLG NLT
Sbjct: 1651 LDIVEHDLLRPQLPSVTYLRLDGSIPAGQRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLT 1710
Query: 832 GANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTN 891
GA+ V+ + DWNP D+QA +RA RIGQK+ V VYRLITRGT+EEK+ Q +K + N
Sbjct: 1711 GADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIAN 1770
Query: 892 KILKNPQQR-RFFKARNMKDLFTLND-DGNGGSTETS 926
++ + + DLFTL+ DG +TS
Sbjct: 1771 TVISQENASLQSMGTEQLLDLFTLDKKDGKTEKPDTS 1807
Score = 274 (101.5 bits), Expect = 4.4e-58, Sum P(3) = 4.4e-58
Identities = 64/176 (36%), Positives = 98/176 (55%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
L++ +Y+ +R + ++++ Y +LDEGH I+N ++S KQL +RII++G PIQ
Sbjct: 1371 LIVASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQ 1430
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAV-VLRDLI 656
N + ELWSLFDF+ PG LG F A + PI A +S + A+ L +
Sbjct: 1431 NNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQEAVGVLAMEALHRQV 1490
Query: 657 MPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSL 712
+P+LLRRMK DV LP K +C L+ Q +Y F A S + +D + +S+
Sbjct: 1491 LPFLLRRMKEDVLQDLPPKIIQDYYCVLSPLQVQLYEDF-AKSRAKCDIDETVSSI 1545
Score = 131 (51.2 bits), Expect = 4.4e-58, Sum P(3) = 4.4e-58
Identities = 38/102 (37%), Positives = 50/102 (49%)
Query: 393 KIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF--SNMY 450
KIP I L YQ+ GV WL L+ + GI+ D+MGLGKT+Q + L H + Y
Sbjct: 1250 KIPVPIKAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCLRAQEY 1309
Query: 451 K----------PSIVVCPVTLLRQWKREAEKWYPSFHVELLH 482
PS+VVCP TL W E K+ ++ LH
Sbjct: 1310 ARTKLVDSVPLPSLVVCPPTLTGHWVDEVGKFCSKEYLNPLH 1351
Score = 52 (23.4 bits), Expect = 4.2e-27, Sum P(3) = 4.2e-27
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 715 IDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQM 774
+ +RK+CNHP L+ + Q P+Y +E++ L+ D H L A Q +
Sbjct: 1566 LQYLRKLCNHPALV---LTTQHPEY--KRITEQLAAHNSSLR---DIQHAPKLSALKQLL 1617
Query: 775 LD 776
LD
Sbjct: 1618 LD 1619
Score = 37 (18.1 bits), Expect = 4.3e-25, Sum P(2) = 4.3e-25
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 701 VEQILDGSRNSLYGIDV 717
+EQ+LDG + Y I V
Sbjct: 1237 LEQLLDGKKLENYKIPV 1253
>UNIPROTKB|P51532 [details] [associations]
symbol:SMARCA4 "Transcription activator BRG1" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0007399 "nervous system development"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0047485 "protein N-terminus binding" evidence=IPI] [GO:0016514
"SWI/SNF complex" evidence=IDA] [GO:0003714 "transcription
corepressor activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0071564 "npBAF complex" evidence=ISS;IDA]
[GO:0071565 "nBAF complex" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=IC;IDA] [GO:0001105 "RNA polymerase II
transcription coactivator activity" evidence=IDA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0071778 "WINAC complex"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP;IDA] [GO:0030308 "negative regulation
of cell growth" evidence=IMP] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IGI;IDA]
[GO:0060766 "negative regulation of androgen receptor signaling
pathway" evidence=IMP] [GO:0050681 "androgen receptor binding"
evidence=IPI] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IGI] [GO:0045749 "negative regulation of S phase of
mitotic cell cycle" evidence=TAS] [GO:0070577 "histone
acetyl-lysine binding" evidence=IDA] [GO:0051091 "positive
regulation of sequence-specific DNA binding transcription factor
activity" evidence=IDA] [GO:0002039 "p53 binding" evidence=IPI]
[GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0003713 "transcription
coactivator activity" evidence=IMP;NAS] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=NAS]
[GO:0006337 "nucleosome disassembly" evidence=IDA] [GO:0043923
"positive regulation by host of viral transcription" evidence=IMP]
[GO:0030957 "Tat protein binding" evidence=IPI] [GO:0003407 "neural
retina development" evidence=IEP] [GO:0045893 "positive regulation
of transcription, DNA-dependent" evidence=IMP] InterPro:IPR000330
InterPro:IPR001487 InterPro:IPR001650 InterPro:IPR006576
InterPro:IPR014978 Pfam:PF00176 Pfam:PF00271 Pfam:PF00439
Pfam:PF07533 Pfam:PF08880 PRINTS:PR00503 PROSITE:PS50014
PROSITE:PS51194 SMART:SM00297 SMART:SM00490 SMART:SM00592
SMART:SM00951 GO:GO:0005524 GO:GO:0003714 GO:GO:0007399
GO:GO:0051091 GO:GO:0030308 GO:GO:0003677 GO:GO:0006338
GO:GO:0000122 GO:GO:0000790 GO:GO:0071564 GO:GO:0016514
GO:GO:0003407 GO:GO:0071565 GO:GO:0004386 EMBL:CH471106
GO:GO:0001105 GO:GO:0045749 Orphanet:1465 GO:GO:0006337
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
Gene3D:1.20.920.10 SUPFAM:SSF47370 PROSITE:PS00633 GO:GO:0070577
InterPro:IPR018359 GO:GO:0071778 KO:K11647 InterPro:IPR013999
InterPro:IPR014012 InterPro:IPR006562 Pfam:PF07529 SMART:SM00573
PROSITE:PS51204 EMBL:AC011442 GO:GO:0008094 GO:GO:0060766
GO:GO:0043923 EMBL:AC011485 HOGENOM:HOG000172363 HOVERGEN:HBG056636
CTD:6597 EMBL:U29175 EMBL:D26156 EMBL:AF254822 EMBL:EU430756
EMBL:EU430757 EMBL:EU430758 EMBL:EU430759 EMBL:AC006127
IPI:IPI00293426 IPI:IPI00900285 IPI:IPI00900328 IPI:IPI00900338
IPI:IPI01016040 PIR:S45252 RefSeq:NP_001122316.1
RefSeq:NP_001122317.1 RefSeq:NP_001122318.1 RefSeq:NP_001122319.1
RefSeq:NP_001122320.1 RefSeq:NP_003063.2 UniGene:Hs.327527 PDB:2GRC
PDB:2H60 PDB:3UVD PDBsum:2GRC PDBsum:2H60 PDBsum:3UVD
ProteinModelPortal:P51532 SMR:P51532 DIP:DIP-24249N IntAct:P51532
MINT:MINT-204078 STRING:P51532 PhosphoSite:P51532 DMDM:116242792
PaxDb:P51532 PRIDE:P51532 Ensembl:ENST00000344626
Ensembl:ENST00000413806 Ensembl:ENST00000429416
Ensembl:ENST00000444061 Ensembl:ENST00000450717
Ensembl:ENST00000541122 GeneID:6597 KEGG:hsa:6597 UCSC:uc002mqf.4
GeneCards:GC19P011071 HGNC:HGNC:11100 HPA:CAB004208 MIM:603254
MIM:613325 MIM:614609 neXtProt:NX_P51532 Orphanet:231108
PharmGKB:PA35950 ChiTaRS:SMARCA4 EvolutionaryTrace:P51532
GenomeRNAi:6597 NextBio:25661 ArrayExpress:P51532 Bgee:P51532
CleanEx:HS_SMARCA4 Genevestigator:P51532 GermOnline:ENSG00000127616
Uniprot:P51532
Length = 1647
Score = 331 (121.6 bits), Expect = 4.4e-58, Sum P(5) = 4.4e-58
Identities = 73/200 (36%), Positives = 115/200 (57%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQSCQ---------IPDYGNPERSEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S + S K +++ ++L
Sbjct: 1031 GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+ H+VLLF Q ++ I+E + G++Y R+DG T + R L+ +N S+ F
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 1150
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQ 1230
Score = 290 (107.1 bits), Expect = 4.4e-58, Sum P(5) = 4.4e-58
Identities = 72/215 (33%), Positives = 116/215 (53%)
Query: 532 LRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRI 589
LRS + +L+TTYE + L + W Y ++DEGHR++N + +++ V R+
Sbjct: 848 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 907
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QNKL ELW+L +F+ P FE F P + G + ++
Sbjct: 908 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG----EKVDLNEEETIL 963
Query: 650 VV--LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------SE 700
++ L ++ P+LLRR+K +V AQLP+K E+V+ C ++ QR +YR A SE
Sbjct: 964 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 1023
Query: 701 VEQILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
++ G +L I +RKICNHP + + E+S
Sbjct: 1024 KDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEES 1058
Score = 147 (56.8 bits), Expect = 4.4e-58, Sum P(5) = 4.4e-58
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L YQ G++WL L+ GI+ DEMGLGKTIQ ++ + L + P +++ P++
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLS 813
Query: 461 LLRQWKREAEKWYPS 475
L W E +KW PS
Sbjct: 814 TLSNWAYEFDKWAPS 828
Score = 46 (21.3 bits), Expect = 4.6e-58, Sum P(6) = 4.6e-58
Identities = 31/135 (22%), Positives = 55/135 (40%)
Query: 49 PHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRR-VSTKEDNDIDDGDSTEQD 107
P K +DP QE+ Y + I + + L + TK ++
Sbjct: 354 PIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQ 413
Query: 108 GREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQ 167
R+ + V D L+ AL A K+ K++K Q ++E IT K +E Q
Sbjct: 414 -RQLRQEVVVCMRRDTALETALNA---KAYKRSKRQSLREAR-----ITEK-LEK----Q 459
Query: 168 DLVKEEHRPKRKSKE 182
+++E + ++K +E
Sbjct: 460 QKIEQERKRRQKHQE 474
Score = 42 (19.8 bits), Expect = 4.6e-47, Sum P(5) = 4.6e-47
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVC 457
G + GD + TI+ L L L+F + +VVC
Sbjct: 390 GSLAGD-LRTKATIE-LKALRLLNFQRQLRQEVVVC 423
Score = 40 (19.1 bits), Expect = 4.4e-58, Sum P(5) = 4.4e-58
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 987 GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEA-LRQSR 1045
G + E++ +L+S+F + D EE+ EE+ S+ R+ + ++ R
Sbjct: 1543 GSLIYEDSIVLQSVFTSVR-QKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGR 1601
Query: 1046 MLRSRD 1051
+++D
Sbjct: 1602 KEKAQD 1607
Score = 39 (18.8 bits), Expect = 4.4e-58, Sum P(5) = 4.4e-58
Identities = 19/74 (25%), Positives = 30/74 (40%)
Query: 56 IDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSA 115
+ P S S+E + E E A+ L K+ D D D +E D R ++A
Sbjct: 651 VAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENA 710
Query: 116 VQASPNDMTLQHAL 129
Q ++ + AL
Sbjct: 711 KQDVDDEYGVSQAL 724
Score = 37 (18.1 bits), Expect = 4.6e-58, Sum P(6) = 4.6e-58
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 244 QQPGPSNKQNVPDEQEARSNDPFSASVDR--ALRMMSEAAQ 282
+QP + +P E++ + DP S V A ++ A Q
Sbjct: 672 EQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQ 712
Score = 37 (18.1 bits), Expect = 9.3e-58, Sum P(6) = 9.3e-58
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 1016 MNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTW 1058
M A EE+ L + + +R EA R R ++ +P+W
Sbjct: 1305 MIARHEEEFDLFMRMD-LDRRREEARNPKRKPRLMEEDELPSW 1346
Score = 37 (18.1 bits), Expect = 3.8e-57, Sum P(6) = 3.8e-57
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 50 HDKSESIDPSSTSQEKLYNKLRAVEFEIGAVA 81
H ES+ S + YN+++ + G A
Sbjct: 73 HKPMESMHEKGMSDDPRYNQMKGMGMRSGGHA 104
>UNIPROTKB|Q9HBD4 [details] [associations]
symbol:SMARCA4 "SMARCA4 isoform 2" species:9606 "Homo
sapiens" [GO:0004386 "helicase activity" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0000792 "heterochromatin" evidence=IEA] [GO:0000902 "cell
morphogenesis" evidence=IEA] [GO:0000977 "RNA polymerase II
regulatory region sequence-specific DNA binding" evidence=IEA]
[GO:0001570 "vasculogenesis" evidence=IEA] [GO:0001832 "blastocyst
growth" evidence=IEA] [GO:0001835 "blastocyst hatching"
evidence=IEA] [GO:0001889 "liver development" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0005719 "nuclear
euchromatin" evidence=IEA] [GO:0005726 "perichromatin fibrils"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=IEA] [GO:0007403 "glial cell fate determination"
evidence=IEA] [GO:0008134 "transcription factor binding"
evidence=IEA] [GO:0010424 "DNA methylation on cytosine within a CG
sequence" evidence=IEA] [GO:0019827 "stem cell maintenance"
evidence=IEA] [GO:0030198 "extracellular matrix organization"
evidence=IEA] [GO:0030216 "keratinocyte differentiation"
evidence=IEA] [GO:0030900 "forebrain development" evidence=IEA]
[GO:0030902 "hindbrain development" evidence=IEA] [GO:0035116
"embryonic hindlimb morphogenesis" evidence=IEA] [GO:0035887
"aortic smooth muscle cell differentiation" evidence=IEA]
[GO:0043388 "positive regulation of DNA binding" evidence=IEA]
[GO:0043966 "histone H3 acetylation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048562 "embryonic organ morphogenesis"
evidence=IEA] [GO:0048730 "epidermis morphogenesis" evidence=IEA]
[GO:0060318 "definitive erythrocyte differentiation" evidence=IEA]
[GO:0060347 "heart trabecula formation" evidence=IEA] [GO:0071564
"npBAF complex" evidence=IEA] [GO:0071565 "nBAF complex"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001487
InterPro:IPR001650 InterPro:IPR006576 InterPro:IPR014978
Pfam:PF00176 Pfam:PF00271 Pfam:PF00439 Pfam:PF07533 Pfam:PF08880
PRINTS:PR00503 PROSITE:PS50014 PROSITE:PS51194 SMART:SM00297
SMART:SM00490 SMART:SM00592 SMART:SM00951 GO:GO:0005524
GO:GO:0030216 GO:GO:0045944 GO:GO:0030198 GO:GO:0030900
GO:GO:0001889 GO:GO:0003682 GO:GO:0006338 GO:GO:0000122
GO:GO:0071564 GO:GO:0071565 GO:GO:0000902 GO:GO:0004386
GO:GO:0001570 GO:GO:0035116 GO:GO:0005719 GO:GO:0030902
EMBL:CH471106 GO:GO:0048730 GO:GO:0000977 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 Gene3D:1.20.920.10
SUPFAM:SSF47370 PROSITE:PS00633 InterPro:IPR018359 GO:GO:0000792
GO:GO:0060347 GO:GO:0043966 GO:GO:0043388 KO:K11647
InterPro:IPR013999 InterPro:IPR014012 InterPro:IPR006562
Pfam:PF07529 SMART:SM00573 PROSITE:PS51204 EMBL:AC011442
GO:GO:0001835 GO:GO:0007403 GO:GO:0006346 GO:GO:0010424
GO:GO:0060318 GO:GO:0048562 GO:GO:0001832 EMBL:AC011485
GO:GO:0005726 HOGENOM:HOG000172363 HOVERGEN:HBG056636 GO:GO:0035887
CTD:6597 EMBL:AF254822 EMBL:AC006127 UniGene:Hs.327527 GeneID:6597
KEGG:hsa:6597 HGNC:HGNC:11100 PharmGKB:PA35950 ChiTaRS:SMARCA4
GenomeRNAi:6597 NextBio:25661 IPI:IPI00900269 RefSeq:NP_001122321.1
SMR:Q9HBD4 STRING:Q9HBD4 Ensembl:ENST00000358026 UCSC:uc010dxo.3
Uniprot:Q9HBD4
Length = 1679
Score = 331 (121.6 bits), Expect = 5.0e-58, Sum P(5) = 5.0e-58
Identities = 73/200 (36%), Positives = 115/200 (57%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLER-EQSCQ---------IPDYGNPERSEKMKVVAQVLK 756
G++ + I +RKICNHP + + E+S + S K +++ ++L
Sbjct: 1031 GTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGLDLYRASGKFELLDRILP 1090
Query: 757 VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVF 815
+ H+VLLF Q ++ I+E + G++Y R+DG T + R L+ +N S+ F
Sbjct: 1091 KLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAEDRGMLLKTFNEPGSEYF 1150
Query: 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875
IF+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RIGQ+ +V V RL T ++
Sbjct: 1151 IFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRIGQQNEVRVLRLCTVNSV 1210
Query: 876 EEKVYHRQIYKHFLTNKILK 895
EEK+ YK + K+++
Sbjct: 1211 EEKILAAAKYKLNVDQKVIQ 1230
Score = 290 (107.1 bits), Expect = 5.0e-58, Sum P(5) = 5.0e-58
Identities = 72/215 (33%), Positives = 116/215 (53%)
Query: 532 LRS-ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV-HRI 589
LRS + +L+TTYE + L + W Y ++DEGHR++N + +++ V R+
Sbjct: 848 LRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRL 907
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QNKL ELW+L +F+ P FE F P + G + ++
Sbjct: 908 LLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG----EKVDLNEEETIL 963
Query: 650 VV--LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS-------SE 700
++ L ++ P+LLRR+K +V AQLP+K E+V+ C ++ QR +YR A SE
Sbjct: 964 IIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKGVLLTDGSE 1023
Query: 701 VEQILDGSRNSLYG-IDVMRKICNHPDLLER-EQS 733
++ G +L I +RKICNHP + + E+S
Sbjct: 1024 KDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEES 1058
Score = 147 (56.8 bits), Expect = 5.0e-58, Sum P(5) = 5.0e-58
Identities = 29/75 (38%), Positives = 43/75 (57%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L YQ G++WL L+ GI+ DEMGLGKTIQ ++ + L + P +++ P++
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLS 813
Query: 461 LLRQWKREAEKWYPS 475
L W E +KW PS
Sbjct: 814 TLSNWAYEFDKWAPS 828
Score = 46 (21.3 bits), Expect = 5.3e-58, Sum P(6) = 5.3e-58
Identities = 31/135 (22%), Positives = 55/135 (40%)
Query: 49 PHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRR-VSTKEDNDIDDGDSTEQD 107
P K +DP QE+ Y + I + + L + TK ++
Sbjct: 354 PIQKPRGLDPVEILQEREYRLQARIAHRIQELENLPGSLAGDLRTKATIELKALRLLNFQ 413
Query: 108 GREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQ 167
R+ + V D L+ AL A K+ K++K Q ++E IT K +E Q
Sbjct: 414 -RQLRQEVVVCMRRDTALETALNA---KAYKRSKRQSLREAR-----ITEK-LEK----Q 459
Query: 168 DLVKEEHRPKRKSKE 182
+++E + ++K +E
Sbjct: 460 QKIEQERKRRQKHQE 474
Score = 42 (19.8 bits), Expect = 5.2e-47, Sum P(5) = 5.2e-47
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVC 457
G + GD + TI+ L L L+F + +VVC
Sbjct: 390 GSLAGD-LRTKATIE-LKALRLLNFQRQLRQEVVVC 423
Score = 40 (19.1 bits), Expect = 5.0e-58, Sum P(5) = 5.0e-58
Identities = 14/66 (21%), Positives = 31/66 (46%)
Query: 987 GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEA-LRQSR 1045
G + E++ +L+S+F + D EE+ EE+ S+ R+ + ++ R
Sbjct: 1575 GSLIYEDSIVLQSVFTSVR-QKIEKEDDSEGEESEEEEEGEEEGSESESRSVKVKIKLGR 1633
Query: 1046 MLRSRD 1051
+++D
Sbjct: 1634 KEKAQD 1639
Score = 39 (18.8 bits), Expect = 5.0e-58, Sum P(5) = 5.0e-58
Identities = 19/74 (25%), Positives = 30/74 (40%)
Query: 56 IDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSA 115
+ P S S+E + E E A+ L K+ D D D +E D R ++A
Sbjct: 651 VAPRSDSEESGSEEEEEEEEEEQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENA 710
Query: 116 VQASPNDMTLQHAL 129
Q ++ + AL
Sbjct: 711 KQDVDDEYGVSQAL 724
Score = 37 (18.1 bits), Expect = 5.3e-58, Sum P(6) = 5.3e-58
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 244 QQPGPSNKQNVPDEQEARSNDPFSASVDR--ALRMMSEAAQ 282
+QP + +P E++ + DP S V A ++ A Q
Sbjct: 672 EQPQAAQPPTLPVEEKKKIPDPDSDDVSEVDARHIIENAKQ 712
Score = 37 (18.1 bits), Expect = 1.1e-57, Sum P(6) = 1.1e-57
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 1016 MNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTW 1058
M A EE+ L + + +R EA R R ++ +P+W
Sbjct: 1305 MIARHEEEFDLFMRMD-LDRRREEARNPKRKPRLMEEDELPSW 1346
Score = 37 (18.1 bits), Expect = 4.5e-57, Sum P(6) = 4.5e-57
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 50 HDKSESIDPSSTSQEKLYNKLRAVEFEIGAVA 81
H ES+ S + YN+++ + G A
Sbjct: 73 HKPMESMHEKGMSDDPRYNQMKGMGMRSGGHA 104
>FB|FBgn0023395 [details] [associations]
symbol:Chd3 "Chd3" species:7227 "Drosophila melanogaster"
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS;NAS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR001965 InterPro:IPR002464 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 PROSITE:PS00690
PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:AE014296 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0006333
Gene3D:3.30.40.10 InterPro:IPR011011 InterPro:IPR013083
SUPFAM:SSF57903 GO:GO:0004386 InterPro:IPR019786 PROSITE:PS01359
InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 PROSITE:PS00598 GeneTree:ENSGT00560000076896
InterPro:IPR009463 Pfam:PF06465 EMBL:AY071503 EMBL:AF007780
RefSeq:NP_649111.1 ProteinModelPortal:O16102 SMR:O16102
DIP:DIP-21327N MINT:MINT-1651376 STRING:O16102 PaxDb:O16102
EnsemblMetazoa:FBtr0074998 GeneID:40111 KEGG:dme:Dmel_CG9594
UCSC:CG9594-RA CTD:1107 FlyBase:FBgn0023395 InParanoid:O16102
OMA:IKWRDLA OrthoDB:EOG4JH9WN PhylomeDB:O16102 GenomeRNAi:40111
NextBio:817050 Bgee:O16102 GermOnline:CG9594 Uniprot:O16102
Length = 892
Score = 546 (197.3 bits), Expect = 5.6e-58, Sum P(2) = 5.6e-58
Identities = 130/369 (35%), Positives = 208/369 (56%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
+++T+YE + + L ++W V+DE HR+R+ ++ + + + +++++TG P+Q
Sbjct: 383 VMLTSYEFISVDAAFLGCIDWAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQ 442
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N L EL+ L +F+ GK L F+AEF V + QV L +++
Sbjct: 443 NNLEELFHLLNFLSSGKFNDLQTFQAEFT---DV-----SKEEQVKR-------LHEILE 487
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASS--EVEQILDGSRNSLYGI 715
P++LRR+KADV +P K+E ++ L+ Q+ Y+ L + + Q G SL I
Sbjct: 488 PHMLRRLKADVLKSMPPKSEFIVRVELSSMQKKFYKHILTKNFKALNQKGGGRVCSLLNI 547
Query: 716 DV-MRKICNHPDLL-EREQSCQIPDYGNPERSE------KMKVVAQVLKVWKDQGHRVLL 767
+ +RK CNHP L + I G E S K+ +++++LK K HRVLL
Sbjct: 548 MMDLRKCCNHPYLFPSAAEEATISPSGLYEMSSLTKASGKLDLLSKMLKQLKADNHRVLL 607
Query: 768 FAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNS-SDVFIFILTTKVGGL 826
F+Q +ML++LE FL GY+Y R+DG R ID +N+ S+ F+F+L+T+ GGL
Sbjct: 608 FSQMTKMLNVLEHFLEGEGYQYDRIDGSIKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGL 667
Query: 827 GTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYK 886
G NL A+ VIIFD DWNP DVQA RA R+GQK+ V +YR +T ++EE++ +K
Sbjct: 668 GINLATADTVIIFDSDWNPHNDVQAFSRAHRMGQKKKVMIYRFVTHNSVEERIMQVAKHK 727
Query: 887 HFLTNKILK 895
LT+ +++
Sbjct: 728 MMLTHLVVR 736
Score = 129 (50.5 bits), Expect = 5.6e-58, Sum P(2) = 5.6e-58
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYK-PSIVVCPVT 460
L +Q GV WL Q I+ DEMGLGKTIQ + FL +L + P ++ P++
Sbjct: 267 LHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTVVFLYSLFKEGHCRGPFLISVPLS 326
Query: 461 LLRQWKREAEKWYPSFH 477
L W+RE E W P +
Sbjct: 327 TLTNWERELELWAPELY 343
>TIGR_CMR|BA_5487 [details] [associations]
symbol:BA_5487 "helicase, putative" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0004386 "helicase activity" evidence=ISS]
[GO:0006268 "DNA unwinding involved in replication" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000099451 InterPro:IPR022138 Pfam:PF12419
RefSeq:NP_847649.1 RefSeq:YP_022153.1 RefSeq:YP_031335.1
ProteinModelPortal:Q81K50 IntAct:Q81K50 DNASU:1085116
EnsemblBacteria:EBBACT00000010571 EnsemblBacteria:EBBACT00000018432
EnsemblBacteria:EBBACT00000022093 GeneID:1085116 GeneID:2819120
GeneID:2852260 KEGG:ban:BA_5487 KEGG:bar:GBAA_5487 KEGG:bat:BAS5096
OMA:ASTIYEF ProtClustDB:CLSK888016
BioCyc:BANT260799:GJAJ-5171-MONOMER
BioCyc:BANT261594:GJ7F-5349-MONOMER Uniprot:Q81K50
Length = 918
Score = 513 (185.6 bits), Expect = 5.7e-58, Sum P(2) = 5.7e-58
Identities = 132/381 (34%), Positives = 204/381 (53%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
+++T+Y +L E+L + W +LDE I+NP+ + S + LQ H+I +TG P++
Sbjct: 551 VVLTSYALAQLDEEELSTLCWDAVILDEAQNIKNPHTKQSKAVRNLQANHKIALTGTPME 610
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N+L+ELWS+FDF+ G LG L F+ F PI + ++ R I
Sbjct: 611 NRLAELWSIFDFINHGYLGSLGQFQRRFVSPIE----KDRDEGKIQQVQR-------FIS 659
Query: 658 PYLLRRMKAD--VNAQLPKKTEHVLFCSLTEEQRAVYRAFLASS--EVEQILDGSRNS-- 711
P+LLRR K D V LP K E +C LT EQ ++Y + + VE + R
Sbjct: 660 PFLLRRTKKDQTVALNLPDKQEQKAYCPLTGEQASLYEQLVQDTLQNVEGLSGIERRGFI 719
Query: 712 LYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQT 771
L ++ +++ICNHP L +E + D ERS K + ++++ KDQ L+F Q
Sbjct: 720 LLMLNKLKQICNHPALYLKETEPK--DI--IERSMKTSTLMELIENIKDQNESCLIFTQY 775
Query: 772 QQMLDILESFLIAS-GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNL 830
M ++L++ L G ++G P K+R +I+++ N + IFIL+ K GG G NL
Sbjct: 776 IGMGNMLKNVLEEHFGQRVLFLNGSVPKKERDKMIEQFQNGT-YDIFILSLKAGGTGLNL 834
Query: 831 TGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLT 890
T AN VI +D WNP+ + QA +RA+RIGQK+ V V++LIT GT+EEK+ K L
Sbjct: 835 TAANHVIHYDRWWNPAVENQATDRAYRIGQKRFVHVHKLITTGTLEEKIDEMLERKQSLN 894
Query: 891 NKILKNPQQRRFFKARNMKDL 911
N ++ + +K+L
Sbjct: 895 NAVITSDSWMTELSTDELKEL 915
Score = 166 (63.5 bits), Expect = 5.7e-58, Sum P(2) = 5.7e-58
Identities = 32/97 (32%), Positives = 60/97 (61%)
Query: 394 IPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYK-P 452
+P S+ L YQ+ G++WL L G ++ D+MGLGK+IQ +++L + +N+ P
Sbjct: 443 VPSSLHATLRPYQQHGIEWLLYLRKLGFGALLADDMGLGKSIQTITYLLYIKENNLQTGP 502
Query: 453 SIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLG 489
+++V P ++L W++E E++ P+ V+L + S + G
Sbjct: 503 ALIVAPTSVLGNWQKEFERFAPNLRVQLHYGSNRAKG 539
Score = 38 (18.4 bits), Expect = 6.4e-44, Sum P(3) = 6.4e-44
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 465 WKREAEKWYP-SFHVELLHDS 484
WKR A W+ SF+ L ++
Sbjct: 35 WKRNAFTWHSTSFYGTFLKEA 55
Score = 38 (18.4 bits), Expect = 6.4e-44, Sum P(3) = 6.4e-44
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 521 PKKWDLLINRVLRSESGL--LITTYEQLRLLGEKLLDVE-WGY 560
PK+W R+L ++ G L+ + +L + E W +
Sbjct: 237 PKRWHDYEERILETQEGFSKLVPWLKDGDTFRSELFETEAWNF 279
>ZFIN|ZDB-GENE-021025-1 [details] [associations]
symbol:btaf1 "BTAF1 RNA polymerase II, B-TFIID
transcription factor-associated" species:7955 "Danio rerio"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR000357 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 Pfam:PF02985 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-021025-1 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003677 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR022707
Pfam:PF12054 GeneTree:ENSGT00630000089754 EMBL:BX530089
EMBL:CR792417 IPI:IPI00929996 Ensembl:ENSDART00000084327
ArrayExpress:F1Q603 Bgee:F1Q603 Uniprot:F1Q603
Length = 1861
Score = 335 (123.0 bits), Expect = 5.8e-58, Sum P(5) = 5.8e-58
Identities = 73/181 (40%), Positives = 105/181 (58%)
Query: 763 HRVLLFAQTQQMLDILESFLIAS---GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFIL 819
HRVL+F Q + MLDI+E L+ G Y R+DG R +++ +NN + + +L
Sbjct: 1655 HRVLIFCQLKSMLDIVEQDLLKPQLPGVTYLRLDGSVQAGLRHSIVSRFNNDPSIDVLLL 1714
Query: 820 TTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKV 879
TT VGGLG NLTGA+ V+ + DWNP D+QA +RA RIGQK+ V VYRLITRGT+EEK+
Sbjct: 1715 TTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKI 1774
Query: 880 YHRQIYKHFLTNKILKNPQQR-RFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVNV 938
Q +K + N ++ + + +LFTL+ D + S+ S S +V
Sbjct: 1775 MGLQKFKMTIANTVISQENASLQSMGTEQLLNLFTLDKDDKAEKCDGSSSSSGKSSMKSV 1834
Query: 939 V 939
+
Sbjct: 1835 L 1835
Score = 285 (105.4 bits), Expect = 5.8e-58, Sum P(5) = 5.8e-58
Identities = 61/161 (37%), Positives = 89/161 (55%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
L++ +Y+ +R E D+++ Y +LDEGH I+N ++S KQL +R+I++G PIQ
Sbjct: 1388 LIVASYDVVRNDVEFFRDIKFNYCILDEGHVIKNGKTKLSKAIKQLTANYRLILSGTPIQ 1447
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N + ELWSLFDF+ PG LG F A + PI A +S + L ++
Sbjct: 1448 NNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAMEALHRQVL 1507
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS 698
P+LLRRMK DV LP K +C+L+ Q +Y F S
Sbjct: 1508 PFLLRRMKDDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKS 1548
Score = 138 (53.6 bits), Expect = 5.8e-58, Sum P(5) = 5.8e-58
Identities = 40/102 (39%), Positives = 50/102 (49%)
Query: 393 KIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF--SNMY 450
KIP I L YQ+ GV WL L+ + GI+ D+MGLGKT+Q + L HF + Y
Sbjct: 1267 KIPVPIKAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHFLRAQEY 1326
Query: 451 K----------PSIVVCPVTLLRQWKREAEKWYPSFHVELLH 482
PSIVVCP TL W E K+ + LH
Sbjct: 1327 TRTKAPDSCPLPSIVVCPPTLTGHWVDEVGKFCSKEFLNPLH 1368
Score = 53 (23.7 bits), Expect = 5.8e-58, Sum P(5) = 5.8e-58
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 715 IDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQM 774
+ +RK+CNHP L+ Q P+Y + +E++ L+ D H L A Q +
Sbjct: 1582 LQYLRKLCNHPALVLTPQH---PEYKHI--TEQLSTQHSSLR---DIQHAPKLSALKQLL 1633
Query: 775 LD 776
LD
Sbjct: 1634 LD 1635
Score = 47 (21.6 bits), Expect = 4.4e-24, Sum P(4) = 4.4e-24
Identities = 24/85 (28%), Positives = 43/85 (50%)
Query: 494 RAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKL 553
+ +S D D++ E S+DS +EG + K +++I + ++S +LI L E+
Sbjct: 231 KQRSRDVDSN-EKSNDS-FEGEPEEKRRKTTNVVIEQPA-NDSKVLIDNVPDNSSLFEET 287
Query: 554 LDVEWGY-AVLDE-GHRIRNPNAEI 576
EW + DE + + NP+ EI
Sbjct: 288 Q--EWPLESFCDELCNDLFNPSWEI 310
Score = 38 (18.4 bits), Expect = 5.8e-58, Sum P(5) = 5.8e-58
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 51 DKSESIDPSSTSQEKLYNKLRAVEFEIGAVA 81
D S+ + + + L N L+ +E GA++
Sbjct: 1077 DSSQLLKQGDSVAQDLVNSLQVLEVTAGAMS 1107
Score = 38 (18.4 bits), Expect = 4.4e-24, Sum P(4) = 4.4e-24
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 683 SLTEE---QRAVYRAFLASSEVEQILDGSRNSLYGIDV 717
S++E+ Q+A R FL EQ+LDG + Y I V
Sbjct: 1238 SMSEDLIRQKARERHFL-----EQLLDGRKLENYKIPV 1270
>FB|FBgn0002989 [details] [associations]
symbol:okr "okra" species:7227 "Drosophila melanogaster"
[GO:0046843 "dorsal appendage formation" evidence=IMP] [GO:0048477
"oogenesis" evidence=IGI;IMP;TAS] [GO:0006302 "double-strand break
repair" evidence=IMP;TAS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=TAS] [GO:0006417 "regulation of translation" evidence=TAS]
[GO:0007131 "reciprocal meiotic recombination" evidence=TAS]
[GO:0030261 "chromosome condensation" evidence=TAS] [GO:0006281
"DNA repair" evidence=NAS] [GO:0010212 "response to ionizing
radiation" evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0006338 "chromatin remodeling" evidence=IMP] [GO:0045003
"double-strand break repair via synthesis-dependent strand
annealing" evidence=IMP] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0006417 GO:GO:0051301 GO:GO:0007067 EMBL:AE014134
GO:GO:0003677 GO:GO:0010212 GO:GO:0006338 GO:GO:0004386
GO:GO:0030261 GO:GO:0008298 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0046843 GO:GO:0007131
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG EMBL:Y10229
EMBL:AF069779 EMBL:AF069780 EMBL:AY069599 EMBL:FJ219215
EMBL:FJ219218 EMBL:FJ219219 EMBL:FJ219220 EMBL:FJ219221
EMBL:FJ219222 EMBL:FJ219223 EMBL:FJ219224 EMBL:FJ219225
EMBL:FJ219226 EMBL:FJ219227 EMBL:FJ219228 EMBL:FJ219229
EMBL:FJ219230 EMBL:FJ219231 EMBL:FJ219232 EMBL:FJ219233
EMBL:FJ219234 EMBL:FJ219235 EMBL:FJ219236 EMBL:FJ219237
EMBL:FJ219238 EMBL:FJ219239 EMBL:FJ219240 EMBL:FJ219241
EMBL:FJ219242 EMBL:FJ219243 EMBL:FJ219244 EMBL:FJ219245
EMBL:FJ219246 EMBL:FJ219247 RefSeq:NP_476661.1 UniGene:Dm.19774
ProteinModelPortal:O76460 SMR:O76460 IntAct:O76460 MINT:MINT-807919
STRING:O76460 PRIDE:O76460 EnsemblMetazoa:FBtr0077673 GeneID:33507
KEGG:dme:Dmel_CG3736 UCSC:CG3736-RA CTD:33507 FlyBase:FBgn0002989
InParanoid:O76460 PhylomeDB:O76460 GenomeRNAi:33507 NextBio:783944
Bgee:O76460 Uniprot:O76460
Length = 784
Score = 362 (132.5 bits), Expect = 6.5e-58, Sum P(3) = 6.5e-58
Identities = 72/178 (40%), Positives = 111/178 (62%)
Query: 741 NPERSEKMKVVAQVLKVWKDQGH-RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
NPE S K ++ +L + +G+ +V+L + Q LD+ E Y + R+DG +K
Sbjct: 494 NPELSGKFMLLDFMLAAIRAEGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIK 553
Query: 800 QRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
+R ++D +N+ SD F+F+L++K GG G NL GANR+ +FDPDWNP+ D QA R WR
Sbjct: 554 KRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRD 613
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLN 915
GQK+ +YRL+ G+IEEK+ RQ +K L++ I+ N + + F ++KDLFT +
Sbjct: 614 GQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFTFD 671
Score = 259 (96.2 bits), Expect = 6.5e-58, Sum P(3) = 6.5e-58
Identities = 67/211 (31%), Positives = 106/211 (50%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
+L+ +YE R+ E L E G + DEGHR++N + L+T R++++G PIQ
Sbjct: 271 VLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQ 330
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N L+E +SL +FV P LG VF+ F I G +++ + A L L+
Sbjct: 331 NDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEQERQRAIEKTQELIGLVD 390
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL-D----GSRNSL 712
++RR + LP K E V+ LT Q +Y FL S +V + L D S +L
Sbjct: 391 QCIIRRTNQILTKYLPVKFEMVICAKLTAIQLELYTNFLKSDQVRRSLADCNEKASLTAL 450
Query: 713 YGIDVMRKICNHPDLLEREQSCQIPDYGNPE 743
I ++KIC+HPDL+ + + + + N +
Sbjct: 451 ADITTLKKICSHPDLIYEKLTAREKGFENSQ 481
Score = 110 (43.8 bits), Expect = 6.5e-58, Sum P(3) = 6.5e-58
Identities = 30/82 (36%), Positives = 49/82 (59%)
Query: 400 NNLFDYQKVGVQWLWE-LHCQRA---GGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSI 454
N L +Q+ GV++++E + +R G I+ DEMGLGKT+Q ++ + L KP+I
Sbjct: 154 NILRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTI 213
Query: 455 ----VVCPVTLLRQWKREAEKW 472
VV P +L++ W++E KW
Sbjct: 214 NKAIVVSPSSLVKNWEKEFTKW 235
>UNIPROTKB|F1SDB8 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006338 "chromatin remodeling" evidence=IEA] [GO:0005886
"plasma membrane" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:CU462855
Ensembl:ENSSSCT00000007340 Uniprot:F1SDB8
Length = 905
Score = 536 (193.7 bits), Expect = 8.4e-58, Sum P(2) = 8.4e-58
Identities = 137/373 (36%), Positives = 202/373 (54%)
Query: 532 LRSESG--LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRI 589
L+ ESG +L+TTYE L W V+DE HR++N N+ + + R+
Sbjct: 142 LKQESGFHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQNSLLHKSLSEFSVAFRL 201
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG PIQN L EL+SL FV P +F E V V Y + + A
Sbjct: 202 LLTGTPIQNSLQELYSLLSFVEPD------LFSKE-EVEDFVQRYED-----IEKESESA 249
Query: 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASS-EVEQILDGS 708
L L+ P+LLRR+KA+V A+LPKKTE V++ ++ Q+ Y+A L E+ +
Sbjct: 250 SELYKLLQPFLLRRVKAEVAAELPKKTEVVIYHGMSALQKKYYKAILMKDLEISDAFENE 309
Query: 709 ---RNSLYGI-DVMRKICNHPDLLE--REQSCQIPDYGNPERSEKMKVVAQVLKVWKDQG 762
+ L + +RK +HP L + + +I D+ E S K+ ++ ++L +G
Sbjct: 310 MAKKVKLQNVLSQLRKCVDHPYLFDGVEPEPFEIGDH-LIEASGKLHLLDKLLAFLYSKG 368
Query: 763 HRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTK 822
HRVLLF+Q QMLDIL+ ++ GY Y R+DG ++R I + +FIF+L+T+
Sbjct: 369 HRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQP-IFIFLLSTR 427
Query: 823 VGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHR 882
GG+G NLT A+ VI D D+NP D+QA RA RIGQ + V V RLI R T+EE + +
Sbjct: 428 AGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIICRK 487
Query: 883 QIYKHFLTNKILK 895
K LTN I++
Sbjct: 488 AASKLKLTNTIIE 500
Score = 139 (54.0 bits), Expect = 8.4e-58, Sum P(2) = 8.4e-58
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLS-FLGALHFSNMYKPSIVVCPV 459
+L YQ GV WL + + G I+GDEMGLGKT Q ++ F+ N P +++CP+
Sbjct: 47 HLRPYQLEGVNWLAQCFHYQNGCILGDEMGLGKTCQTIAVFIYLAGRLNDEGPFLILCPL 106
Query: 460 TLLRQWKREAEKWYP 474
++L WK E E+ P
Sbjct: 107 SVLSNWKEEMERCAP 121
Score = 43 (20.2 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 899 QRRFFKARNMKDLFTLNDDGN--GGSTETSNIFSQLSEDVN 937
Q++++KA MKDL + N + N+ SQL + V+
Sbjct: 288 QKKYYKAILMKDLEISDAFENEMAKKVKLQNVLSQLRKCVD 328
>UNIPROTKB|B4KHL5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7230 "Drosophila mojavensis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH933807 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002002852.1 EnsemblMetazoa:FBtr0161485
GeneID:6576868 KEGG:dmo:Dmoj_GI10760 FlyBase:FBgn0133523
InParanoid:B4KHL5 Uniprot:B4KHL5
Length = 783
Score = 361 (132.1 bits), Expect = 9.2e-58, Sum P(4) = 9.2e-58
Identities = 77/204 (37%), Positives = 118/204 (57%)
Query: 717 VMRKICNHPDLLEREQSCQIPDYG----NPERSEKMKVVAQVLKVWK-DQGHRVLLFAQT 771
+ KI E Q+ P+Y NPE S K ++ +L + + +V+L +
Sbjct: 460 IYEKIAAKEKGFENSQNVLPPNYKPKDVNPELSGKFMLLDFMLAAIRANSDDKVVLISNY 519
Query: 772 QQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNL 830
Q LD+ E Y Y R+DG +K+R ++D +N+ S+D F+F+L++K GG G NL
Sbjct: 520 TQTLDLFEQLARKRKYTYVRLDGTMTIKKRSKVVDRFNDPSTDCFLFMLSSKAGGCGLNL 579
Query: 831 TGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLT 890
GANR+ +FDPDWNP+ D QA R WR GQK+ +YRL+ G+IEEK+ RQ +K L+
Sbjct: 580 IGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLS 639
Query: 891 NKILKNPQQ-RRFFKARNMKDLFT 913
+ I+ N + + F ++KDLF+
Sbjct: 640 STIIDNNESSEKHFTRDDLKDLFS 663
Score = 264 (98.0 bits), Expect = 9.2e-58, Sum P(4) = 9.2e-58
Identities = 69/221 (31%), Positives = 110/221 (49%)
Query: 528 INRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVH 587
+N R + +L+ +YE RL L E G + DEGHR++N + L+T
Sbjct: 255 MNTATRCGTPVLLISYETFRLYAHILCKTEVGMVICDEGHRLKNSDNLTYQALMGLKTKR 314
Query: 588 RIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYR 647
R++++G PIQN L+E +SL +FV P LG F+ F I G A+++ + A +
Sbjct: 315 RVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENSILRGQNADSTDAERQRALQ 374
Query: 648 CAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL-D 706
L L+ ++RR + LP K E V+ LT Q +Y FL S +V + L D
Sbjct: 375 KTQELIGLVNQCIIRRTNQILTKYLPVKFEMVVCVKLTPVQLQIYTNFLKSDQVRRSLAD 434
Query: 707 ----GSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPE 743
S +L I ++K+CNHPDL+ + + + + N +
Sbjct: 435 CNEKASLTALADITTLKKLCNHPDLIYEKIAAKEKGFENSQ 475
Score = 111 (44.1 bits), Expect = 9.2e-58, Sum P(4) = 9.2e-58
Identities = 30/89 (33%), Positives = 53/89 (59%)
Query: 394 IPESIFNNLF-DYQKVGVQWLWE-LHCQRA---GGIIGDEMGLGKTIQVLSFLGAL-HFS 447
+ + I +N+ +Q+ GV++++E + +R G I+ DEMGLGKT+Q ++ L S
Sbjct: 140 VVDPILSNVLRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLTWTLLRQS 199
Query: 448 NMYKPSI----VVCPVTLLRQWKREAEKW 472
KP+I +V P +L++ W++E KW
Sbjct: 200 PDCKPTISKAIIVSPSSLVKNWEKEFTKW 228
Score = 37 (18.1 bits), Expect = 9.2e-58, Sum P(4) = 9.2e-58
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 1152 RTSRSSKNASDVQPE 1166
RTS++ N D PE
Sbjct: 759 RTSKNDDNDEDFDPE 773
>UNIPROTKB|B4JCS7 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7222 "Drosophila grimshawi" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043150 EMBL:CH916368
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001988299.1
STRING:B4JCS7 EnsemblMetazoa:FBtr0146056 GeneID:6562163
KEGG:dgr:Dgri_GH10642 FlyBase:FBgn0118123 InParanoid:B4JCS7
OMA:TYQALMG Uniprot:B4JCS7
Length = 786
Score = 360 (131.8 bits), Expect = 9.9e-58, Sum P(4) = 9.9e-58
Identities = 72/176 (40%), Positives = 109/176 (61%)
Query: 741 NPERSEKMKVVAQVLKVWK-DQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
NPE S K ++ +L + + +V+L + Q LD+ E Y Y R+DG +K
Sbjct: 488 NPELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLFEQLARKRKYSYVRLDGTMTIK 547
Query: 800 QRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
+R ++D +N+ SSD F+F+L++K GG G NL GANR+ +FDPDWNP+ D QA R WR
Sbjct: 548 KRSKVVDRFNDPSSDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRD 607
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFT 913
GQK+ +YRL+ G+IEEK+ RQ +K L++ I+ N + + F ++KDLF+
Sbjct: 608 GQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESVEKHFTRDDLKDLFS 663
Score = 257 (95.5 bits), Expect = 9.9e-58, Sum P(4) = 9.9e-58
Identities = 68/221 (30%), Positives = 110/221 (49%)
Query: 528 INRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVH 587
+N R + +L+ +YE RL L E G + DEGHR++N + L+T
Sbjct: 255 MNTSTRCGTPVLLISYETFRLYAHILCKTEVGMVICDEGHRLKNSDNLTYQALMGLKTKR 314
Query: 588 RIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYR 647
R++++G PIQN L+E +SL +FV P LG F+ F I G A+++ + A
Sbjct: 315 RVLLSGTPIQNDLTEYFSLVNFVNPEMLGTATDFKRNFENAILRGQNADSTDTERERALL 374
Query: 648 CAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEV-EQILD 706
L L+ ++RR + LP K E V+ LT Q +Y FL S +V + D
Sbjct: 375 KTQELIGLVNQCIIRRTNQILTKYLPVKFEMVVCAKLTAVQLQIYTNFLKSDQVCRSLAD 434
Query: 707 -GSRNSLYGI-DV--MRKICNHPDLLEREQSCQIPDYGNPE 743
+ SL + D+ ++K+CNHPDL+ + + + + N +
Sbjct: 435 CNEKTSLTALSDITTLKKLCNHPDLIYEKLAAREKGFENSQ 475
Score = 111 (44.1 bits), Expect = 9.9e-58, Sum P(4) = 9.9e-58
Identities = 31/82 (37%), Positives = 49/82 (59%)
Query: 400 NNLFDYQKVGVQWLWE-LHCQRA---GGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSI 454
N L +Q+ GV++++E + +R G I+ DEMGLGKT+Q ++ L S KP+I
Sbjct: 147 NVLRPHQREGVRFMYECVEGKRGSFNGCIMADEMGLGKTLQCVTLTWTLLRQSADCKPTI 206
Query: 455 ----VVCPVTLLRQWKREAEKW 472
VV P +L++ W++E KW
Sbjct: 207 SKAIVVSPSSLVKNWEKEFTKW 228
Score = 45 (20.9 bits), Expect = 9.9e-58, Sum P(4) = 9.9e-58
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 955 ASANADDAVGDKENNLEIGSSRRKGKEKVDNIGDEVDEETNIL 997
+ A A A + + E+ S+RK K+ + + D+ D+E +L
Sbjct: 735 SQAEAKPAATTTDEDEELSDSKRKAKKTLAS--DDDDDEDFVL 775
>ASPGD|ASPL0000017334 [details] [associations]
symbol:AN3811 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:XP_661415.1
ProteinModelPortal:Q5B6L9 EnsemblFungi:CADANIAT00004901
GeneID:2873228 KEGG:ani:AN3811.2 HOGENOM:HOG000183446 OMA:CRIGLTG
OrthoDB:EOG4R539X Uniprot:Q5B6L9
Length = 1016
Score = 375 (137.1 bits), Expect = 1.0e-57, Sum P(4) = 1.0e-57
Identities = 77/189 (40%), Positives = 119/189 (62%)
Query: 725 PDLLEREQSCQ--IPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFL 782
PD ER + I +Y + E K KV+ ++LK W G +VL+F+ + ++L +L+
Sbjct: 601 PDEWERLYRTRDSIINYADAEYCGKWKVLRKLLKWWHGNGDKVLVFSHSVRLLKMLQMLF 660
Query: 783 IASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPD 842
+ Y +DG + R ++DE+N+ F+F+++T+ GG+G N+T AN+V+I DP+
Sbjct: 661 NHTSYNVSYLDGSMTYETRAKVVDEFNSDPRQFVFLISTRAGGVGLNITSANKVVIVDPN 720
Query: 843 WNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRF 902
WNPS D+QA++RA+RIGQ ++V V+RLI+ GTIEE VY RQIYK N +RR+
Sbjct: 721 WNPSHDLQAQDRAYRIGQTRNVEVFRLISAGTIEEIVYARQIYKQQQANIGYNASSERRY 780
Query: 903 FKA-RNMKD 910
FK + KD
Sbjct: 781 FKGVQEKKD 789
Score = 249 (92.7 bits), Expect = 1.0e-57, Sum P(4) = 1.0e-57
Identities = 56/181 (30%), Positives = 96/181 (53%)
Query: 525 DLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQ 584
DL+++ +LITTY + + V+W + DE H I+ ++E + +
Sbjct: 348 DLVLHAAKSGRVEILITTYSTYLKNRDAVNMVDWDCVIADECHAIKERSSETTKAMNDIN 407
Query: 585 TVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVST 644
+ RI +TG IQN+ ELW+L ++ PG++G + +++ + P+ +G +A+ Q+
Sbjct: 408 ALCRIGLTGTAIQNRYEELWTLLNWTNPGRMGPVTTWKSHVSEPLKIGQSHDATVQQLRR 467
Query: 645 AYRCAVVLRDLIMP-YLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQ 703
A A L + ++P + LRRMK + QLPKK + V+FC LT+ Q Y L S +
Sbjct: 468 ARVTAKKLVENLLPQFFLRRMKTLIADQLPKKIDRVVFCPLTDTQAQAYERLLDSDIIHY 527
Query: 704 I 704
I
Sbjct: 528 I 528
Score = 119 (46.9 bits), Expect = 1.0e-57, Sum P(4) = 1.0e-57
Identities = 31/82 (37%), Positives = 45/82 (54%)
Query: 394 IPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPS 453
IP I L YQ G +L +L + GGI+GD+MGLGKT+QV++FL A + +
Sbjct: 237 IPAPIAQWLRPYQVEGAAFLHQLFVYQKGGILGDDMGLGKTVQVIAFLTAAYGKTGDERD 296
Query: 454 IVVCPVTLLRQWKR-EAEKWYP 474
+R+ +R E + WYP
Sbjct: 297 D-----KRMRKMRRSEGDLWYP 313
Score = 77 (32.2 bits), Expect = 4.0e-32, Sum P(3) = 4.0e-32
Identities = 23/79 (29%), Positives = 36/79 (45%)
Query: 450 YKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHD 509
Y ++++CP TL+ WK E +W +H + S +DL AKS + +
Sbjct: 312 YPRTLIICPGTLIENWKSEMSRW-GWWHFDAYQGSNKDLVLHA--AKSGRVEI--LITTY 366
Query: 510 SDYEGNLSSRNPKKWDLLI 528
S Y N + N WD +I
Sbjct: 367 STYLKNRDAVNMVDWDCVI 385
Score = 42 (19.8 bits), Expect = 4.6e-28, Sum P(4) = 4.6e-28
Identities = 11/28 (39%), Positives = 14/28 (50%)
Query: 608 DFVFPGKLGVLPVFEAEFAVPITVGGYA 635
D P LGV+P A++ P V G A
Sbjct: 227 DISLPCSLGVIPAPIAQWLRPYQVEGAA 254
Score = 39 (18.8 bits), Expect = 2.1e-49, Sum P(4) = 2.1e-49
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 496 KSSDTD--NDGEGSHDSDYEGNLSSRNPKK 523
KSSD D N+GE + +++ N SR K+
Sbjct: 85 KSSDNDSFNEGEAVY-KEFK-NRKSRKRKR 112
Score = 38 (18.4 bits), Expect = 1.0e-57, Sum P(4) = 1.0e-57
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 1114 SELLARIRGNQENAV 1128
S+L ARIRG ++ V
Sbjct: 857 SQLAARIRGETDDEV 871
>UNIPROTKB|B4NXB8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7245 "Drosophila yakuba" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CM000157
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043150 GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872
EMBL:FJ219212 RefSeq:XP_002087763.1 STRING:B4NXB8 GeneID:6526655
KEGG:dya:Dyak_GE14966 FlyBase:FBgn0232556 Uniprot:B4NXB8
Length = 784
Score = 362 (132.5 bits), Expect = 1.1e-57, Sum P(3) = 1.1e-57
Identities = 72/180 (40%), Positives = 111/180 (61%)
Query: 741 NPERSEKMKVVAQVLKVWKDQGH-RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
NPE S K ++ +L + G+ +V+L + Q LD+ E Y + R+DG +K
Sbjct: 494 NPELSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIK 553
Query: 800 QRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
+R ++D +N+ SD F+F+L++K GG G NL GANR+ +FDPDWNP+ D QA R WR
Sbjct: 554 KRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRD 613
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLNDD 917
GQK+ +YR++ G+IEEK+ RQ +K L++ I+ N + + F ++KDLFT + D
Sbjct: 614 GQKKPCYIYRMVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFTFDAD 673
Score = 257 (95.5 bits), Expect = 1.1e-57, Sum P(3) = 1.1e-57
Identities = 67/211 (31%), Positives = 106/211 (50%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
+L+ +YE R+ E L E G + DEGHR++N + L+T R++++G PIQ
Sbjct: 271 VLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQ 330
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N L+E +SL +FV P LG VF+ F I G +++ + A L L+
Sbjct: 331 NDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEGERQRAIEKTQELIGLVD 390
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL-D----GSRNSL 712
++RR + LP K E V+ LT Q +Y FL S +V + L D S +L
Sbjct: 391 QCIIRRTNQILTKYLPVKFEMVICAKLTSIQLELYTNFLKSDQVRRSLADCNEKASLTAL 450
Query: 713 YGIDVMRKICNHPDLLEREQSCQIPDYGNPE 743
I ++KIC+HPDL+ + + + + N +
Sbjct: 451 ADITTLKKICSHPDLIYEKITAREKGFENSQ 481
Score = 110 (43.8 bits), Expect = 1.1e-57, Sum P(3) = 1.1e-57
Identities = 30/82 (36%), Positives = 49/82 (59%)
Query: 400 NNLFDYQKVGVQWLWE-LHCQRA---GGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSI 454
N L +Q+ GV++++E + +R G I+ DEMGLGKT+Q ++ + L KP+I
Sbjct: 154 NILRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTI 213
Query: 455 ----VVCPVTLLRQWKREAEKW 472
VV P +L++ W++E KW
Sbjct: 214 NKAIVVSPSSLVKNWEKEFTKW 235
>UNIPROTKB|B3NAN8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7220 "Drosophila erecta" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH954177
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001968502.1
EnsemblMetazoa:FBtr0144523 GeneID:6543248 KEGG:der:Dere_GG24469
FlyBase:FBgn0116601 Uniprot:B3NAN8
Length = 784
Score = 364 (133.2 bits), Expect = 1.3e-57, Sum P(3) = 1.3e-57
Identities = 73/180 (40%), Positives = 111/180 (61%)
Query: 741 NPERSEKMKVVAQVLKVWKDQGH-RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
NPE S K ++ +L + G+ +V+L + Q LD+ E Y + R+DG +K
Sbjct: 494 NPELSGKFMLLDFMLAAIRADGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIK 553
Query: 800 QRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
+R ++D +N+ SD F+F+L++K GG G NL GANR+ +FDPDWNP+ D QA R WR
Sbjct: 554 KRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRD 613
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLNDD 917
GQK+ +YRL+ G+IEEK+ RQ +K L++ I+ N + + F ++KDLFT + D
Sbjct: 614 GQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFTFDAD 673
Score = 254 (94.5 bits), Expect = 1.3e-57, Sum P(3) = 1.3e-57
Identities = 66/211 (31%), Positives = 106/211 (50%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
+L+ +YE R+ E L E G + DEGHR++N + L+T R++++G PIQ
Sbjct: 271 VLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQ 330
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N L+E +SL +FV P LG VF+ F I G +++ + A L L+
Sbjct: 331 NDLTEYYSLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTDAERQRAIAKTQELIGLVD 390
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL-D----GSRNSL 712
++RR + LP K E V+ LT Q +Y FL S +V + L D S +L
Sbjct: 391 QCIIRRTNQILTKYLPVKFEMVICAKLTSIQLELYTNFLKSDQVRRSLADCKEKASLTAL 450
Query: 713 YGIDVMRKICNHPDLLEREQSCQIPDYGNPE 743
I ++KIC+HP+L+ + + + + N +
Sbjct: 451 ADITTLKKICSHPNLIYEKITARDKGFENSQ 481
Score = 110 (43.8 bits), Expect = 1.3e-57, Sum P(3) = 1.3e-57
Identities = 30/82 (36%), Positives = 49/82 (59%)
Query: 400 NNLFDYQKVGVQWLWE-LHCQRA---GGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSI 454
N L +Q+ GV++++E + +R G I+ DEMGLGKT+Q ++ + L KP+I
Sbjct: 154 NILRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTI 213
Query: 455 ----VVCPVTLLRQWKREAEKW 472
VV P +L++ W++E KW
Sbjct: 214 NKAIVVSPSSLVKNWEKEFTKW 235
>UNIPROTKB|Q29KH2 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:46245 "Drosophila pseudoobscura pseudoobscura"
[GO:0000711 "meiotic DNA repair synthesis" evidence=ISS]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=ISS] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=ISS] [GO:0006338
"chromatin remodeling" evidence=ISS] [GO:0010212 "response to
ionizing radiation" evidence=ISS] [GO:0043150 "DNA synthesis
involved in double-strand break repair via homologous
recombination" evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH379061 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 RefSeq:XP_001356143.2
GeneID:4816519 KEGG:dpo:Dpse_GA17651 FlyBase:FBgn0077662
InParanoid:Q29KH2 Uniprot:Q29KH2
Length = 782
Score = 368 (134.6 bits), Expect = 1.9e-57, Sum P(3) = 1.9e-57
Identities = 73/180 (40%), Positives = 112/180 (62%)
Query: 741 NPERSEKMKVVAQVLKVWKDQGH-RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
NPE S K K++ +L + G+ +V+L + Q LD+ E Y + R+DG +K
Sbjct: 492 NPELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIK 551
Query: 800 QRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
+R ++D +N+ SD F+F+L++K GG G NL GANR+ +FDPDWNP+ D QA R WR
Sbjct: 552 KRSKVVDRFNDPESDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRD 611
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLNDD 917
GQK+ +YRL+ G+IEEK+ RQ +K L++ I+ N + + F ++KDLF+ + D
Sbjct: 612 GQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFSFDPD 671
Score = 246 (91.7 bits), Expect = 1.9e-57, Sum P(3) = 1.9e-57
Identities = 66/206 (32%), Positives = 104/206 (50%)
Query: 528 INRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVH 587
+N R + +L+ +YE R+ E L E G + DEGHR++N + L+T
Sbjct: 258 MNASTRLGTPVLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKR 317
Query: 588 RIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYR 647
R++++G PIQN L+E +SL +FV P LG F+ F I G A+++ + A
Sbjct: 318 RVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDKERDRALE 377
Query: 648 CAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL-D 706
L L+ ++RR + LP K E V+ LT Q +Y FL S +V + L D
Sbjct: 378 KTQELIKLVDQCIIRRTNQILTKYLPVKFEMVICAKLTPIQLQLYTNFLKSDQVRRSLAD 437
Query: 707 ----GSRNSLYGIDVMRKICNHPDLL 728
S +L I ++K+C+HP+L+
Sbjct: 438 CKEKASLTALADITTLKKLCSHPNLI 463
Score = 112 (44.5 bits), Expect = 1.9e-57, Sum P(3) = 1.9e-57
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 400 NNLFDYQKVGVQWLWE-LHCQRA---GGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSI 454
N L +Q+ GV++++E + +R G I+ DEMGLGKT+Q ++ + L S KP+I
Sbjct: 150 NILRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVALVWTLLKQSAECKPTI 209
Query: 455 ----VVCPVTLLRQWKREAEKW 472
+V P +L++ W++E KW
Sbjct: 210 NKCIIVSPSSLVKNWEKEFTKW 231
>UNIPROTKB|B4M9A8 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7244 "Drosophila virilis" [GO:0000711 "meiotic
DNA repair synthesis" evidence=ISS] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=ISS]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=ISS] [GO:0006338 "chromatin remodeling" evidence=ISS]
[GO:0010212 "response to ionizing radiation" evidence=ISS]
[GO:0043150 "DNA synthesis involved in double-strand break repair
via homologous recombination" evidence=ISS] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271
Pfam:PF08658 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
GO:GO:0010212 GO:GO:0006338 GO:GO:0004386 EMBL:CH940654
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043150 GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002057711.1 STRING:B4M9A8 EnsemblMetazoa:FBtr0234205
GeneID:6634100 KEGG:dvi:Dvir_GJ18280 FlyBase:FBgn0205441
InParanoid:B4M9A8 Uniprot:B4M9A8
Length = 786
Score = 359 (131.4 bits), Expect = 2.4e-57, Sum P(3) = 2.4e-57
Identities = 76/203 (37%), Positives = 116/203 (57%)
Query: 717 VMRKICNHPDLLEREQSCQIPDYG----NPERSEKMKVVAQVLKVWK-DQGHRVLLFAQT 771
+ KI E Q+ P+Y NPE S K ++ +L + + +V+L +
Sbjct: 460 IYEKIAAREKGFENSQNVLPPNYKPKDVNPELSGKFMLLDFMLAAIRANSDDKVVLISNY 519
Query: 772 QQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNL 830
Q LD+ E Y Y R+DG +K+R ++D +N+ ++D F+F+L++K GG G NL
Sbjct: 520 TQTLDLFEQLARKRKYSYVRLDGTMTIKKRSKVVDRFNDPATDCFLFMLSSKAGGCGLNL 579
Query: 831 TGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLT 890
GANR+ +FDPDWNP+ D QA R WR GQK+ +YRL+ G+IEEK+ RQ +K L+
Sbjct: 580 IGANRLFMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLS 639
Query: 891 NKIL-KNPQQRRFFKARNMKDLF 912
+ I+ N + F ++KDLF
Sbjct: 640 SSIIDNNDSAEKHFTRDDLKDLF 662
Score = 255 (94.8 bits), Expect = 2.4e-57, Sum P(3) = 2.4e-57
Identities = 68/221 (30%), Positives = 109/221 (49%)
Query: 528 INRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVH 587
+N R + +L+ +YE RL L E G + DEGHR++N + L+T
Sbjct: 255 MNTATRCGTPVLLISYETFRLYSHILCKTEVGMVICDEGHRLKNSDNLTYQALMGLKTKR 314
Query: 588 RIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYR 647
R++++G PIQN L+E +SL +FV P LG F+ F I G A+++ + A
Sbjct: 315 RVLLSGTPIQNDLTEYFSLVNFVNPEMLGTGSDFKRNFENAILRGQNADSTDAERERALE 374
Query: 648 CAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL-- 705
L L+ ++RR + LP K E V+ LT Q +Y FL S +V + L
Sbjct: 375 KTQELVGLVNQCIIRRTNQILTKYLPVKFEMVVCAKLTAVQLQLYTNFLKSDQVRRSLAD 434
Query: 706 --DGSR-NSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPE 743
D + +L I ++K+CNHPDL+ + + + + N +
Sbjct: 435 CTDKTTLTALADITTLKKLCNHPDLIYEKIAAREKGFENSQ 475
Score = 112 (44.5 bits), Expect = 2.4e-57, Sum P(3) = 2.4e-57
Identities = 31/89 (34%), Positives = 53/89 (59%)
Query: 394 IPESIFNNLF-DYQKVGVQWLWE-LHCQRA---GGIIGDEMGLGKTIQVLSFLGAL-HFS 447
+ + I +N+ +Q+ GV++++E + +R G I+ DEMGLGKT+Q ++ L S
Sbjct: 140 VVDPILSNVLRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLTWTLLRQS 199
Query: 448 NMYKPSI----VVCPVTLLRQWKREAEKW 472
KP+I VV P +L++ W++E KW
Sbjct: 200 PDCKPTISKAIVVSPSSLVKNWEKEFTKW 228
>ASPGD|ASPL0000055935 [details] [associations]
symbol:AN0855 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0015616 "DNA translocase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0032392 "DNA geometric change"
evidence=IEA] [GO:0045144 "meiotic sister chromatid segregation"
evidence=IEA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IEA] [GO:0030491 "heteroduplex formation" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:BN001308 GO:GO:0003677 GO:GO:0004386
EMBL:AACD01000013 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 KO:K10877 HOGENOM:HOG000204521 OMA:NTENTRT
OrthoDB:EOG4CVKG1 RefSeq:XP_658459.1 ProteinModelPortal:Q5BF25
STRING:Q5BF25 EnsemblFungi:CADANIAT00001803 GeneID:2876630
KEGG:ani:AN0855.2 Uniprot:Q5BF25
Length = 1011
Score = 326 (119.8 bits), Expect = 2.4e-57, Sum P(4) = 2.4e-57
Identities = 63/178 (35%), Positives = 110/178 (61%)
Query: 741 NPERSEKMKVVAQVLKVWKDQ-GHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
+P S K++V+ Q+L + +V+L + LD+L + L + + R+DG TP +
Sbjct: 626 SPSCSAKIRVLDQLLHYLRTSTSEKVVLVSNYTSTLDLLANLLSSLSLPFLRLDGSTPAQ 685
Query: 800 QRMALIDEYNN--SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWR 857
+R +L++++N +S F F+L+ K GG G NL GA+R+++FD DWNP+TD+QA R R
Sbjct: 686 KRQSLVEDFNRHPASTCFAFLLSAKAGGTGLNLIGASRLVLFDVDWNPATDIQAMARIHR 745
Query: 858 IGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLN 915
GQK +YR++ +G++EEK++ RQ+ K L + ++++ F ++DLF L+
Sbjct: 746 DGQKHHCHIYRILLQGSLEEKIWQRQVTKIGLADSVMEHKDSVAQFSRDELRDLFRLD 803
Score = 276 (102.2 bits), Expect = 2.4e-57, Sum P(4) = 2.4e-57
Identities = 70/202 (34%), Positives = 102/202 (50%)
Query: 538 LLITTYEQLRLLGEKLLDVEW-GYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPI 596
++I YE+LR + E L + DEGHR++ + + L RII++G PI
Sbjct: 406 IMIVGYEKLRSVQEGLARGNGVDIVIADEGHRLKTLQNKSGQAIQSLNATKRIILSGTPI 465
Query: 597 QNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLI 656
QN L E ++ D V PG LG F EF PI A+ + LR+L
Sbjct: 466 QNDLKEFFAAVDLVNPGVLGSFKSFIKEFEGPIVRSRQPEATEKDIEKGEARNEELRELT 525
Query: 657 MPYLLRRMKADVNAQ-LPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGI 715
++LRR AD+ A LP KTE+VLFC T Q +Y+ LAS + L S ++L I
Sbjct: 526 SQFMLRRT-ADILADYLPPKTEYVLFCKPTNTQAKIYQNVLASPVFQGALGNSESALQLI 584
Query: 716 DVMRKICNHPDLLEREQSCQIP 737
+++K+CN P LL + + + P
Sbjct: 585 TILKKLCNSPSLLSLKDANEKP 606
Score = 138 (53.6 bits), Expect = 2.4e-57, Sum P(4) = 2.4e-57
Identities = 33/84 (39%), Positives = 52/84 (61%)
Query: 401 NLFDYQKVGVQWLWE-LHCQRA----GGIIGDEMGLGKTIQVLSFLGALHFSN-MY---- 450
+L +Q+ GV++L+E + R+ G I+ D+MGLGKT+Q ++ L L N +Y
Sbjct: 294 HLRPHQREGVKFLYECVMGMRSFNGEGAILADDMGLGKTLQTITLLWTLLKQNPIYEAAP 353
Query: 451 --KPSIVVCPVTLLRQWKREAEKW 472
K +++VCPVTL+ W+RE KW
Sbjct: 354 VIKKALIVCPVTLINNWRREFRKW 377
Score = 41 (19.5 bits), Expect = 2.4e-57, Sum P(4) = 2.4e-57
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 80 VASTVDHLRRVSTKEDNDIDDGDS--TEQDG 108
V S++ RR T + N I DGD + +DG
Sbjct: 88 VDSSLPEARRKPTTKKNKIWDGDGIVSVRDG 118
>SGD|S000003118 [details] [associations]
symbol:INO80 "ATPase and nucleosome spacing factor"
species:4932 "Saccharomyces cerevisiae" [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP;IDA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0016568 "chromatin modification"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0042766 "nucleosome mobilization" evidence=IMP] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IMP] [GO:0043486 "histone exchange"
evidence=IDA] [GO:0043140 "ATP-dependent 3'-5' DNA helicase
activity" evidence=IDA] [GO:0016817 "hydrolase activity, acting on
acid anhydrides" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IMP] [GO:0016584
"nucleosome positioning" evidence=IDA] [GO:0031011 "Ino80 complex"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271 Pfam:PF13892
PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490 SGD:S000003118
GO:GO:0005524 EMBL:BK006941 GO:GO:0003677 GO:GO:0006281
GO:GO:0045944 GO:GO:0016887 GO:GO:0006366 GO:GO:0031011
GO:GO:0006348 GO:GO:0004386 GO:GO:0043486 GO:GO:0042766 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:X99960 GO:GO:0016584 GO:GO:0043618 KO:K11665
GeneTree:ENSGT00680000100052 HOGENOM:HOG000048482 OrthoDB:EOG41G6C8
EMBL:Z72672 PIR:S60416 RefSeq:NP_011365.1 ProteinModelPortal:P53115
SMR:P53115 DIP:DIP-1386N IntAct:P53115 MINT:MINT-388693
STRING:P53115 PaxDb:P53115 PeptideAtlas:P53115 EnsemblFungi:YGL150C
GeneID:852728 KEGG:sce:YGL150C CYGD:YGL150c OMA:DEFSDWF
NextBio:972117 Genevestigator:P53115 GermOnline:YGL150C
Uniprot:P53115
Length = 1489
Score = 344 (126.2 bits), Expect = 2.5e-57, Sum P(5) = 2.5e-57
Identities = 63/160 (39%), Positives = 105/160 (65%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K++ + ++L K +GHRVL++ Q +M+D++E +L Y + R+DG + ++ R L
Sbjct: 1298 SAKLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDRRDL 1357
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+ ++ + ++F+F+L+T+ GGLG NLT A+ VI +D DWNP+ D QA +RA R+GQ + V
Sbjct: 1358 VHDWQTNPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQV 1417
Query: 865 TVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFK 904
TVYRL+ RGTIEE++ R K + +++ Q + K
Sbjct: 1418 TVYRLLVRGTIEERMRDRAKQKEQVQQVVMEGKTQEKNIK 1457
Score = 228 (85.3 bits), Expect = 2.5e-57, Sum P(5) = 2.5e-57
Identities = 74/242 (30%), Positives = 115/242 (47%)
Query: 512 YEGNLSSRNP--KKWDLLINRVLRSES-GLLITTYEQLRLLGEKLLDVEWGYAVLDEGHR 568
Y GN + R K WD R ++ +++T+Y+ + L ++W Y +LDE
Sbjct: 786 YWGNANDRKVLRKFWDRKNLRYNKNAPFHVMVTSYQMVVTDANYLQKMKWQYMILDEAQA 845
Query: 569 IRNPNAEISLVCKQLQTVH---RIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEF 625
I++ S K L + H R+++TG PIQN + ELW+L F+ P F F
Sbjct: 846 IKSSQ---SSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHDEFNEWF 902
Query: 626 AVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLT 685
+ I AN L R ++L+ P++LRR+K +V ++L K E + C LT
Sbjct: 903 SKDIESHAEANTK-LNQQQLRRLHMILK----PFMLRRVKKNVQSELGDKIEIDVLCDLT 957
Query: 686 EEQRAVYRAFLA--SSEVEQILDGSRN-------SLYGID------VM--RKICNHPDLL 728
+ Q +Y+ + S+ + I + + N S G D VM RK+CNHPDL
Sbjct: 958 QRQAKLYQVLKSQISTNYDAIENAATNDSTSNSASNSGSDQNLINAVMQFRKVCNHPDLF 1017
Query: 729 ER 730
ER
Sbjct: 1018 ER 1019
Score = 164 (62.8 bits), Expect = 2.5e-57, Sum P(5) = 2.5e-57
Identities = 41/109 (37%), Positives = 57/109 (52%)
Query: 395 PESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS-NMYKPS 453
P+ + L +YQ G+ WL L+ Q GI+ DEMGLGKT+Q +S L L + N++ P
Sbjct: 699 PKILACTLKEYQLKGLNWLANLYDQGINGILADEMGLGKTVQSISVLAHLAENHNIWGPF 758
Query: 454 IVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDN 502
+VV P + L W E K+ P F + +A D RK K D N
Sbjct: 759 LVVTPASTLHNWVNEISKFLPQFKILPYWGNAND---RKVLRKFWDRKN 804
Score = 53 (23.7 bits), Expect = 3.9e-08, Sum P(4) = 3.9e-08
Identities = 36/138 (26%), Positives = 53/138 (38%)
Query: 976 RRKGKEKVDNIGD--EVD---EETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQA 1030
RR K +GD E+D + T L+ + N+DAI NA +
Sbjct: 934 RRVKKNVQSELGDKIEIDVLCDLTQRQAKLYQVLKSQISTNYDAIENAATNDSTSNSASN 993
Query: 1031 SQVAQRAAEALRQSRM------LRSRDDISVP---TWTGKSGTAGAPSSVRKKFGSTVGS 1081
S Q A+ Q R L R D+ P T GK+ T+ +SV S + +
Sbjct: 994 SGSDQNLINAVMQFRKVCNHPDLFERADVDSPFSFTTFGKT-TSMLTASVANNNSSVISN 1052
Query: 1082 QLIKPLEGSSSN-KTGEF 1098
+ SS+N G+F
Sbjct: 1053 SNMNLSSMSSNNISNGKF 1070
Score = 52 (23.4 bits), Expect = 2.5e-57, Sum P(5) = 2.5e-57
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 93 KEDNDIDDGDSTEQDGREDEK 113
+ DND D D E++G EDE+
Sbjct: 244 ENDND-SDNDDEEENGEEDEE 263
Score = 52 (23.4 bits), Expect = 3.9e-57, Sum P(4) = 3.9e-57
Identities = 31/127 (24%), Positives = 57/127 (44%)
Query: 52 KSESIDPSSTSQE----KLYNKLRAVEFEIGAVASTVD-HLRRVSTKEDNDIDDGDSTEQ 106
K D ++ SQ+ KLY + + E S + +L + ++D D D+ D ++
Sbjct: 92 KDWQFDNTNDSQDLHFKKLYRDMSMINKEWAEYQSFKNANLSDIINEKDADEDEEDDEDE 151
Query: 107 --DGREDEKSAVQASPNDMTLQHALTADRL-KSLKKTKA------QLVKE-LSHFPKGIT 156
DG ED + +AS T ++ + + KS KK A + +K+ +H +T
Sbjct: 152 LEDGEEDMEED-EASTGRHTNGKSMRGNGIQKSRKKDAAAAAAIGKAIKDDQTHADTVVT 210
Query: 157 SKGIEHD 163
G E++
Sbjct: 211 VNGDENE 217
Score = 48 (22.0 bits), Expect = 2.5e-57, Sum P(5) = 2.5e-57
Identities = 15/62 (24%), Positives = 36/62 (58%)
Query: 135 KSLK--KTKAQL-VKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRS 191
K +K +T+A+ ++E+S+F K K ++ ++ +++E + K +E +K K ++
Sbjct: 523 KQIKDFQTRARRGIREMSNFWK----KNEREERDLKKKIEKEAMEQAKKEEEEKESKRQA 578
Query: 192 KQ 193
K+
Sbjct: 579 KK 580
Score = 48 (22.0 bits), Expect = 4.2e-45, Sum P(4) = 4.2e-45
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 497 SSDTDNDGEGSHDSDYEGNLSSRN 520
++D DND E +D+D + + N
Sbjct: 234 NNDNDNDNENENDNDSDNDDEEEN 257
Score = 47 (21.6 bits), Expect = 5.3e-45, Sum P(4) = 5.3e-45
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 496 KSSDTDNDGEGSHDSDYEGNLSSRN 520
+ D DND E ++D+D + + N
Sbjct: 223 EDEDNDNDNENNNDNDNDNENENDN 247
Score = 45 (20.9 bits), Expect = 3.6e-26, Sum P(5) = 3.6e-26
Identities = 15/73 (20%), Positives = 31/73 (42%)
Query: 494 RAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKL 553
RAK+ D+ + + E L+ +NP + + + +L T ++ +L G
Sbjct: 661 RAKAKQFDDHANAHEEEEEEDELNFQNPTS----LGEITIEQPKILACTLKEYQLKG--- 713
Query: 554 LDVEWGYAVLDEG 566
+ W + D+G
Sbjct: 714 --LNWLANLYDQG 724
Score = 44 (20.5 bits), Expect = 1.6e-56, Sum P(5) = 1.6e-56
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 64 EKLYNKLRAVEFEIG-AVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPND 122
+K K A IG A+ H V T ++ +DG++ E + +++ + ND
Sbjct: 181 QKSRKKDAAAAAAIGKAIKDDQTHADTVVTVNGDENEDGNNGEDEDNDNDNENNNDNDND 240
Score = 42 (19.8 bits), Expect = 2.6e-56, Sum P(5) = 2.6e-56
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 94 EDNDIDDGDSTEQDGREDEKSAVQASPND 122
EDND D+ ++ + D ++E S ND
Sbjct: 225 EDNDNDNENNNDNDN-DNENENDNDSDND 252
Score = 42 (19.8 bits), Expect = 4.3e-56, Sum P(4) = 4.3e-56
Identities = 11/59 (18%), Positives = 30/59 (50%)
Query: 93 KEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLK---SLKKTKAQLVKEL 148
++DND +D + + R+ S+ ++ M +T+ ++ ++ + ++V+EL
Sbjct: 281 QDDNDDEDFNPDVEKRRKRSSSSSSSTKLSMNSLSLITSKKINKNITINSDRPKIVREL 339
Score = 42 (19.8 bits), Expect = 9.3e-38, Sum P(6) = 9.3e-38
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 660 LLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYR 693
LL+R+ N PK T+ + F ++T+E V R
Sbjct: 1148 LLKRVIERTNG--PKNTDSLSFKTITQELLEVTR 1179
Score = 42 (19.8 bits), Expect = 5.7e-26, Sum P(4) = 5.7e-26
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 383 PPFVTLE--GGLKIPESIFNNLFD 404
PP VT+E G + SI N LFD
Sbjct: 1217 PP-VTIEVLGSSHVTNSINNELFD 1239
Score = 41 (19.5 bits), Expect = 1.1e-44, Sum P(5) = 1.1e-44
Identities = 17/65 (26%), Positives = 35/65 (53%)
Query: 463 RQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNL--SSRN 520
++ KR+A+K +F LL + F ++ K+++ + + S+DS+ + N+ S+
Sbjct: 572 KESKRQAKKL--NF---LLTQTELYSHFIGRKIKTNELEGNNVSSNDSESQKNIDISALA 626
Query: 521 PKKWD 525
P K D
Sbjct: 627 PNKND 631
Score = 37 (18.1 bits), Expect = 8.7e-56, Sum P(5) = 8.7e-56
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 93 KEDNDIDDGDSTEQDGREDEKSA 115
KED DI D T G+ +K++
Sbjct: 9 KEDKDISDFSKTTA-GKSAKKNS 30
Score = 37 (18.1 bits), Expect = 9.3e-38, Sum P(6) = 9.3e-38
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 517 SSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEW 558
SSRNP K+ L R++ + L++ Y + KL +V++
Sbjct: 1076 SSRNPIKYSL--PRLIYED--LILPNYNNDVDIANKLKNVKF 1113
Score = 37 (18.1 bits), Expect = 7.6e-25, Sum P(4) = 7.6e-25
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 498 SDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGL 538
+D DND +GS +S L++ D R + GL
Sbjct: 411 NDLDNDEDGS-ESHKRRKLNNNTANGADDANKRKFNTRHGL 450
>UNIPROTKB|B4GS98 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7234 "Drosophila persimilis" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043150 EMBL:CH479189 GO:GO:0000711 KO:K10875
OrthoDB:EOG4PC872 RefSeq:XP_002021802.1 EnsemblMetazoa:FBtr0192316
GeneID:6596280 KEGG:dpe:Dper_GL26701 FlyBase:FBgn0164282
Uniprot:B4GS98
Length = 782
Score = 366 (133.9 bits), Expect = 3.2e-57, Sum P(3) = 3.2e-57
Identities = 73/180 (40%), Positives = 112/180 (62%)
Query: 741 NPERSEKMKVVAQVLKVWKDQGH-RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
NPE S K K++ +L + G+ +V+L + Q LD+ E Y + R+DG +K
Sbjct: 492 NPELSGKFKLLDFMLAAIRAHGNDKVVLISNYTQTLDLFELLARKRKYGFVRLDGTMSIK 551
Query: 800 QRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
+R ++D +N+ SD F+F+L++K GG G NL GANR+ +FDPDWNP+ D QA R WR
Sbjct: 552 KRSKVVDRFNDPESDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRD 611
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLNDD 917
GQK+ +YRL+ G+IEEK+ RQ +K L++ I+ N + + F ++KDLF+ + D
Sbjct: 612 GQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFSFDPD 671
Score = 246 (91.7 bits), Expect = 3.2e-57, Sum P(3) = 3.2e-57
Identities = 66/206 (32%), Positives = 104/206 (50%)
Query: 528 INRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVH 587
+N R + +L+ +YE R+ E L E G + DEGHR++N + L+T
Sbjct: 258 MNASTRLGTPVLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKR 317
Query: 588 RIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYR 647
R++++G PIQN L+E +SL +FV P LG F+ F I G A+++ + A
Sbjct: 318 RVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENCILRGQNADSTDKERDRALE 377
Query: 648 CAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL-D 706
L L+ ++RR + LP K E V+ LT Q +Y FL S +V + L D
Sbjct: 378 KTQELIKLVDQCIIRRTNQILTKYLPVKFEMVICAKLTPIQLQLYTNFLKSDQVRRSLAD 437
Query: 707 ----GSRNSLYGIDVMRKICNHPDLL 728
S +L I ++K+C+HP+L+
Sbjct: 438 CKEKASLTALADITTLKKLCSHPNLI 463
Score = 112 (44.5 bits), Expect = 3.2e-57, Sum P(3) = 3.2e-57
Identities = 30/82 (36%), Positives = 50/82 (60%)
Query: 400 NNLFDYQKVGVQWLWE-LHCQRA---GGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSI 454
N L +Q+ GV++++E + +R G I+ DEMGLGKT+Q ++ + L S KP+I
Sbjct: 150 NILRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVALVWTLLKQSAECKPTI 209
Query: 455 ----VVCPVTLLRQWKREAEKW 472
+V P +L++ W++E KW
Sbjct: 210 NKCIIVSPSSLVKNWEKEFTKW 231
>UNIPROTKB|F1NAD2 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0000729 "DNA double-strand
break processing" evidence=IEA] [GO:0000792 "heterochromatin"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035861
"site of double-strand break" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0051304 "chromosome
separation" evidence=IEA] [GO:0070932 "histone H3 deacetylation"
evidence=IEA] [GO:0070933 "histone H4 deacetylation" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792 GO:GO:0070932
GO:GO:0070933 GO:GO:0000018 GeneTree:ENSGT00630000089890
GO:GO:0051304 OMA:KNQRGIQ EMBL:AADN02016061 EMBL:AADN02016062
EMBL:AADN02016063 EMBL:AADN02016064 EMBL:AADN02016065
EMBL:AADN02016066 EMBL:AADN02016067 IPI:IPI00583150
Ensembl:ENSGALT00000016936 Uniprot:F1NAD2
Length = 963
Score = 328 (120.5 bits), Expect = 3.4e-57, Sum P(4) = 3.4e-57
Identities = 66/135 (48%), Positives = 93/135 (68%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K +V+ ++L K++G RV+LF+Q +LDILE FL + Y R+DG T + R+ L
Sbjct: 790 SGKFRVLERLLSDLKEKGDRVVLFSQFTMVLDILEVFLKHWQHRYIRLDGKTQISDRIHL 849
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
IDE+N D+F+F+L+TK GGLG NLT AN VI+ D D NP D QA +R R+GQ ++V
Sbjct: 850 IDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTREV 909
Query: 865 TVYRLITRGTIEEKV 879
V +LI++GTIEE +
Sbjct: 910 KVIKLISKGTIEESM 924
Score = 233 (87.1 bits), Expect = 3.4e-57, Sum P(4) = 3.4e-57
Identities = 66/225 (29%), Positives = 117/225 (52%)
Query: 512 YEGNLSSRNPKKWDLLINRVLRSESGLLITTYE-QLRLLGEKLL--DVEWGYAVLDEGHR 568
Y G+ R + D+ NRV+ + +++TTY + ++ L V+ YA+ DEGH
Sbjct: 513 YVGSQEDRKHLRADIS-NRVV--DFNVIVTTYNCAISSSDDRSLFRKVKLNYAIFDEGHM 569
Query: 569 IRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP 628
++N ++ ++ HR+++TG P+QN L EL SL +FV P + +
Sbjct: 570 LKNMSSVRYQQLMRINAKHRLLLTGTPVQNNLLELMSLLNFVMPHMFS-----SSTSEIR 624
Query: 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQ 688
A + Q + + +I P++LRR+K +V QLP K +H+ C+++E+Q
Sbjct: 625 RMFSSKAKTAEEQSTYEKERIAHAKQIIKPFILRRVKDEVLKQLPPKKDHIELCAMSEKQ 684
Query: 689 RAVYRAFLASSEVEQILDGS-RNSLYGIDVM--RKICNHPDLLER 730
+Y L +++++ + G+ +NS G +M RK+ NHP LL R
Sbjct: 685 EQLYCDLL--NKLKKTMKGNEKNSDMGNAMMQLRKMANHP-LLHR 726
Score = 178 (67.7 bits), Expect = 3.4e-57, Sum P(4) = 3.4e-57
Identities = 39/108 (36%), Positives = 59/108 (54%)
Query: 386 VTLEGGLK--IPE-SIFNNLFD---YQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLS 439
+T +GG + I + S+ N + YQK+G+ WL LH GI+ DEMGLGKTIQ ++
Sbjct: 411 ITEDGGCRWNIEQPSVLNQSLELKPYQKIGLNWLALLHKHGLNGILADEMGLGKTIQAIA 470
Query: 440 FLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQD 487
FL ++ P ++V P + L W RE W P +V + +Q+
Sbjct: 471 FLAHIYQEGDRGPHLIVVPASTLDNWIREVNLWCPELNVLFYYVGSQE 518
Score = 45 (20.9 bits), Expect = 9.6e-25, Sum P(2) = 9.6e-25
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 126 QHALTADRLKSLKKTKAQLVKELSH 150
+H TAD+LK++ K ++KE +H
Sbjct: 726 RHYYTADKLKTMSKL---MLKEPTH 747
Score = 39 (18.8 bits), Expect = 3.4e-57, Sum P(4) = 3.4e-57
Identities = 15/74 (20%), Positives = 32/74 (43%)
Query: 249 SNKQNVPDEQEARSNDPFSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRPFQRL 308
++K+N ++ S+ D+ + + +AA +L+D + + D Q L
Sbjct: 43 ASKENKAPRKDVILISEDSSEDDQPVYQLQKAAHMNNGNQLVDLQEDAEEDIRNAKLQTL 102
Query: 309 KTPFRMPQSEESEV 322
K F PQ + ++
Sbjct: 103 KELF--PQRSDQDL 114
Score = 38 (18.4 bits), Expect = 5.2e-24, Sum P(2) = 5.2e-24
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 266 FSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRPF--QRLK 309
FS+S RM S A+ + E + +PF +R+K
Sbjct: 616 FSSSTSEIRRMFSSKAKTAEEQSTYEKERIAHAKQIIKPFILRRVK 661
>UNIPROTKB|F1RN66 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000015489
Uniprot:F1RN66
Length = 1794
Score = 515 (186.3 bits), Expect = 4.2e-57, Sum P(4) = 4.2e-57
Identities = 131/399 (32%), Positives = 218/399 (54%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHR 568
Y G+++SRN + + + + R + +L+TTYE L L +K L + W + +DE HR
Sbjct: 555 YLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEIL--LKDKAFLGGLNWAFIGVDEAHR 612
Query: 569 IRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP 628
++N ++ + ++ HR+++TG P+QN L ELWSL F+ P K FE E
Sbjct: 613 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKG 672
Query: 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQ 688
G YA+ L + P+LLRR+K DV LP K E +L ++ Q
Sbjct: 673 REYG-YAS---------------LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ 716
Query: 689 RAVYRAFLASSEVEQILDGSRNSLYG-IDVM---RKICNHPDLLEREQSCQIPDYGNPE- 743
+ Y+ ++ + + + GS+ S G +++M +K CNH L++ + + Y E
Sbjct: 717 KQYYK-WILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEF--YNKQEA 773
Query: 744 -----RSE-KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTP 797
RS K+ ++ ++L +++G+RVL+F+Q +MLDIL +L + ++R+DG
Sbjct: 774 LQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 833
Query: 798 VKQRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAW 856
+ R +D +N S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA
Sbjct: 834 GELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAH 893
Query: 857 RIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
R G V +YRL+T+G++EE + R K L + +++
Sbjct: 894 RHGYLSQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQ 932
Score = 165 (63.1 bits), Expect = 4.2e-57, Sum P(4) = 4.2e-57
Identities = 40/95 (42%), Positives = 53/95 (55%)
Query: 383 PPFVTLEGGLKIPESIFNN----LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVL 438
P FV L+ K P I + L DYQ G+ WL C+ I+ DEMGLGKTIQ +
Sbjct: 455 PRFVALK---KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTI 511
Query: 439 SFLGAL-HFSNMYKPSIVVCPVTLLRQWKREAEKW 472
SFL L H +Y P ++V P++ L W+RE + W
Sbjct: 512 SFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTW 546
Score = 55 (24.4 bits), Expect = 4.2e-57, Sum P(4) = 4.2e-57
Identities = 22/108 (20%), Positives = 45/108 (41%)
Query: 91 STKEDNDIDDGDSTEQDGREDEKSAVQASPNDMT-LQHALTADRLKSLKKTKAQLVKELS 149
S+ D+ + G +E + ++ VQA P + + ++ + +++++ A L K+
Sbjct: 49 SSDSDSGSESGSQSESESDNSRENKVQAKPPKVDGAEFWKSSPSILAVQRS-AMLKKQQQ 107
Query: 150 HFPKGITSKGIEHDKFIQ----DLVKEEHRPKRKSKEAQKPGKDRSKQ 193
+ ++ G E D D E R K K ++ Q G Q
Sbjct: 108 QQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQ 155
Score = 48 (22.0 bits), Expect = 2.2e-56, Sum P(4) = 2.2e-56
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 161 EHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTV 197
E +K D + ++ PK KS++ Q + +SK K +
Sbjct: 165 EREKSSCDETESDYEPKNKSRKPQN--RSKSKNGKKI 199
Score = 47 (21.6 bits), Expect = 4.2e-57, Sum P(4) = 4.2e-57
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 1128 VGAGLERQFEVASSSANVARFADTRTSRSSKNASDVQPE 1166
VG L QF+VA+ S + R+SKN ++ PE
Sbjct: 1005 VGDELLSQFKVANFSNMDEDDIELEPERNSKNWEEIIPE 1043
Score = 46 (21.3 bits), Expect = 3.6e-56, Sum P(4) = 3.6e-56
Identities = 15/64 (23%), Positives = 25/64 (39%)
Query: 51 DKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGRE 110
D S S D +S E K + ++++ S ++E+ + D TE D
Sbjct: 121 DSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDETESDYEP 180
Query: 111 DEKS 114
KS
Sbjct: 181 KNKS 184
Score = 45 (20.9 bits), Expect = 9.3e-44, Sum P(3) = 9.3e-44
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 484 SAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWD 525
SA G SSD + GS DSD S++ + D
Sbjct: 26 SASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESD 67
Score = 44 (20.5 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 486 QDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSR 519
QD + R K D+ H S EG+L R
Sbjct: 1677 QDSRYYSDREKHRKLDDHRSRDHRSSLEGSLKDR 1710
Score = 41 (19.5 bits), Expect = 2.4e-43, Sum P(3) = 2.4e-43
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 497 SSDTDNDGEGSHDSDYEGNLSSRN 520
SSD+D+ E S+ E + S N
Sbjct: 49 SSDSDSGSESGSQSESESDNSREN 72
Score = 40 (19.1 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 1106 SAGKVLSSSELLARIR--GNQENAVGAGLERQFEVASSSANVARFADTRTSRSSK 1158
S+GK++ +LL R+R GN+ + + + R ++ + +F R S K
Sbjct: 780 SSGKLILLDKLLIRLRERGNRV-LIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 833
Score = 39 (18.8 bits), Expect = 3.9e-43, Sum P(3) = 3.9e-43
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 462 LRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNP 521
+++ K + E W S S D ++R KSS + + SDYE SR P
Sbjct: 135 VKRKKHKDEDWQMSGSGSP-SQSGSDSESEEEREKSSCDETE------SDYEPKNKSRKP 187
Query: 522 K 522
+
Sbjct: 188 Q 188
>UNIPROTKB|I3L6N4 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR023779 PROSITE:PS00598
InterPro:IPR025260 Pfam:PF13907 GeneTree:ENSGT00560000076896
EMBL:CU570924 EMBL:CU928692 Ensembl:ENSSSCT00000022643
Uniprot:I3L6N4
Length = 1798
Score = 515 (186.3 bits), Expect = 4.3e-57, Sum P(4) = 4.3e-57
Identities = 131/399 (32%), Positives = 218/399 (54%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHR 568
Y G+++SRN + + + + R + +L+TTYE L L +K L + W + +DE HR
Sbjct: 555 YLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEIL--LKDKAFLGGLNWAFIGVDEAHR 612
Query: 569 IRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP 628
++N ++ + ++ HR+++TG P+QN L ELWSL F+ P K FE E
Sbjct: 613 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKG 672
Query: 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQ 688
G YA+ L + P+LLRR+K DV LP K E +L ++ Q
Sbjct: 673 REYG-YAS---------------LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ 716
Query: 689 RAVYRAFLASSEVEQILDGSRNSLYG-IDVM---RKICNHPDLLEREQSCQIPDYGNPE- 743
+ Y+ ++ + + + GS+ S G +++M +K CNH L++ + + Y E
Sbjct: 717 KQYYK-WILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEF--YNKQEA 773
Query: 744 -----RSE-KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTP 797
RS K+ ++ ++L +++G+RVL+F+Q +MLDIL +L + ++R+DG
Sbjct: 774 LQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 833
Query: 798 VKQRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAW 856
+ R +D +N S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA
Sbjct: 834 GELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAH 893
Query: 857 RIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
R G V +YRL+T+G++EE + R K L + +++
Sbjct: 894 RHGYLSQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQ 932
Score = 165 (63.1 bits), Expect = 4.3e-57, Sum P(4) = 4.3e-57
Identities = 40/95 (42%), Positives = 53/95 (55%)
Query: 383 PPFVTLEGGLKIPESIFNN----LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVL 438
P FV L+ K P I + L DYQ G+ WL C+ I+ DEMGLGKTIQ +
Sbjct: 455 PRFVALK---KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTI 511
Query: 439 SFLGAL-HFSNMYKPSIVVCPVTLLRQWKREAEKW 472
SFL L H +Y P ++V P++ L W+RE + W
Sbjct: 512 SFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTW 546
Score = 55 (24.4 bits), Expect = 4.3e-57, Sum P(4) = 4.3e-57
Identities = 22/108 (20%), Positives = 45/108 (41%)
Query: 91 STKEDNDIDDGDSTEQDGREDEKSAVQASPNDMT-LQHALTADRLKSLKKTKAQLVKELS 149
S+ D+ + G +E + ++ VQA P + + ++ + +++++ A L K+
Sbjct: 49 SSDSDSGSESGSQSESESDNSRENKVQAKPPKVDGAEFWKSSPSILAVQRS-AMLKKQQQ 107
Query: 150 HFPKGITSKGIEHDKFIQ----DLVKEEHRPKRKSKEAQKPGKDRSKQ 193
+ ++ G E D D E R K K ++ Q G Q
Sbjct: 108 QQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQ 155
Score = 48 (22.0 bits), Expect = 2.3e-56, Sum P(4) = 2.3e-56
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 161 EHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTV 197
E +K D + ++ PK KS++ Q + +SK K +
Sbjct: 165 EREKSSCDETESDYEPKNKSRKPQN--RSKSKNGKKI 199
Score = 47 (21.6 bits), Expect = 4.3e-57, Sum P(4) = 4.3e-57
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 1128 VGAGLERQFEVASSSANVARFADTRTSRSSKNASDVQPE 1166
VG L QF+VA+ S + R+SKN ++ PE
Sbjct: 1005 VGDELLSQFKVANFSNMDEDDIELEPERNSKNWEEIIPE 1043
Score = 46 (21.3 bits), Expect = 3.7e-56, Sum P(4) = 3.7e-56
Identities = 15/64 (23%), Positives = 25/64 (39%)
Query: 51 DKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGRE 110
D S S D +S E K + ++++ S ++E+ + D TE D
Sbjct: 121 DSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDETESDYEP 180
Query: 111 DEKS 114
KS
Sbjct: 181 KNKS 184
Score = 45 (20.9 bits), Expect = 9.4e-44, Sum P(3) = 9.4e-44
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 484 SAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWD 525
SA G SSD + GS DSD S++ + D
Sbjct: 26 SASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESD 67
Score = 44 (20.5 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 486 QDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSR 519
QD + R K D+ H S EG+L R
Sbjct: 1681 QDSRYYSDREKHRKLDDHRSRDHRSSLEGSLKDR 1714
Score = 41 (19.5 bits), Expect = 2.5e-43, Sum P(3) = 2.5e-43
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 497 SSDTDNDGEGSHDSDYEGNLSSRN 520
SSD+D+ E S+ E + S N
Sbjct: 49 SSDSDSGSESGSQSESESDNSREN 72
Score = 40 (19.1 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 1106 SAGKVLSSSELLARIR--GNQENAVGAGLERQFEVASSSANVARFADTRTSRSSK 1158
S+GK++ +LL R+R GN+ + + + R ++ + +F R S K
Sbjct: 780 SSGKLILLDKLLIRLRERGNRV-LIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 833
Score = 39 (18.8 bits), Expect = 4.0e-43, Sum P(3) = 4.0e-43
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 462 LRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNP 521
+++ K + E W S S D ++R KSS + + SDYE SR P
Sbjct: 135 VKRKKHKDEDWQMSGSGSP-SQSGSDSESEEEREKSSCDETE------SDYEPKNKSRKP 187
Query: 522 K 522
+
Sbjct: 188 Q 188
Score = 38 (18.4 bits), Expect = 3.7e-56, Sum P(4) = 3.7e-56
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 956 SANADDAVGDKENNLEIGSSRRKGKEKVDNIGDEVDE 992
S +D+ KEN EI S + K K+ GD ++
Sbjct: 1356 SEKSDEDDDKKENMDEITSVKHPNK-KIKTEGDSEEK 1391
>UNIPROTKB|I3LIS2 [details] [associations]
symbol:CHD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035064 "methylated histone residue binding"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006338 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
GeneTree:ENSGT00560000076896 OMA:AETHENE EMBL:CU570924
EMBL:CU928692 Ensembl:ENSSSCT00000032432 Uniprot:I3LIS2
Length = 1799
Score = 515 (186.3 bits), Expect = 4.3e-57, Sum P(4) = 4.3e-57
Identities = 131/399 (32%), Positives = 218/399 (54%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHR 568
Y G+++SRN + + + + R + +L+TTYE L L +K L + W + +DE HR
Sbjct: 556 YLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEIL--LKDKAFLGGLNWAFIGVDEAHR 613
Query: 569 IRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP 628
++N ++ + ++ HR+++TG P+QN L ELWSL F+ P K FE E
Sbjct: 614 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKG 673
Query: 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQ 688
G YA+ L + P+LLRR+K DV LP K E +L ++ Q
Sbjct: 674 REYG-YAS---------------LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ 717
Query: 689 RAVYRAFLASSEVEQILDGSRNSLYG-IDVM---RKICNHPDLLEREQSCQIPDYGNPE- 743
+ Y+ ++ + + + GS+ S G +++M +K CNH L++ + + Y E
Sbjct: 718 KQYYK-WILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEF--YNKQEA 774
Query: 744 -----RSE-KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTP 797
RS K+ ++ ++L +++G+RVL+F+Q +MLDIL +L + ++R+DG
Sbjct: 775 LQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 834
Query: 798 VKQRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAW 856
+ R +D +N S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA
Sbjct: 835 GELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAH 894
Query: 857 RIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
R G V +YRL+T+G++EE + R K L + +++
Sbjct: 895 RHGYLSQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQ 933
Score = 165 (63.1 bits), Expect = 4.3e-57, Sum P(4) = 4.3e-57
Identities = 40/95 (42%), Positives = 53/95 (55%)
Query: 383 PPFVTLEGGLKIPESIFNN----LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVL 438
P FV L+ K P I + L DYQ G+ WL C+ I+ DEMGLGKTIQ +
Sbjct: 456 PRFVALK---KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTI 512
Query: 439 SFLGAL-HFSNMYKPSIVVCPVTLLRQWKREAEKW 472
SFL L H +Y P ++V P++ L W+RE + W
Sbjct: 513 SFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTW 547
Score = 55 (24.4 bits), Expect = 4.3e-57, Sum P(4) = 4.3e-57
Identities = 22/108 (20%), Positives = 45/108 (41%)
Query: 91 STKEDNDIDDGDSTEQDGREDEKSAVQASPNDMT-LQHALTADRLKSLKKTKAQLVKELS 149
S+ D+ + G +E + ++ VQA P + + ++ + +++++ A L K+
Sbjct: 50 SSDSDSGSESGSQSESESDNSRENKVQAKPPKVDGAEFWKSSPSILAVQRS-AMLKKQQQ 108
Query: 150 HFPKGITSKGIEHDKFIQ----DLVKEEHRPKRKSKEAQKPGKDRSKQ 193
+ ++ G E D D E R K K ++ Q G Q
Sbjct: 109 QQHQASSNSGSEEDSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQ 156
Score = 48 (22.0 bits), Expect = 2.3e-56, Sum P(4) = 2.3e-56
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 161 EHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTV 197
E +K D + ++ PK KS++ Q + +SK K +
Sbjct: 166 EREKSSCDETESDYEPKNKSRKPQN--RSKSKNGKKI 200
Score = 47 (21.6 bits), Expect = 4.3e-57, Sum P(4) = 4.3e-57
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 1128 VGAGLERQFEVASSSANVARFADTRTSRSSKNASDVQPE 1166
VG L QF+VA+ S + R+SKN ++ PE
Sbjct: 1006 VGDELLSQFKVANFSNMDEDDIELEPERNSKNWEEIIPE 1044
Score = 46 (21.3 bits), Expect = 3.7e-56, Sum P(4) = 3.7e-56
Identities = 15/64 (23%), Positives = 25/64 (39%)
Query: 51 DKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGRE 110
D S S D +S E K + ++++ S ++E+ + D TE D
Sbjct: 122 DSSSSEDSDDSSSEVKRKKHKDEDWQMSGSGSPSQSGSDSESEEEREKSSCDETESDYEP 181
Query: 111 DEKS 114
KS
Sbjct: 182 KNKS 185
Score = 45 (20.9 bits), Expect = 9.4e-44, Sum P(3) = 9.4e-44
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 484 SAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWD 525
SA G SSD + GS DSD S++ + D
Sbjct: 27 SASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGSQSESESD 68
Score = 44 (20.5 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 486 QDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSR 519
QD + R K D+ H S EG+L R
Sbjct: 1682 QDSRYYSDREKHRKLDDHRSRDHRSSLEGSLKDR 1715
Score = 41 (19.5 bits), Expect = 2.5e-43, Sum P(3) = 2.5e-43
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 497 SSDTDNDGEGSHDSDYEGNLSSRN 520
SSD+D+ E S+ E + S N
Sbjct: 50 SSDSDSGSESGSQSESESDNSREN 73
Score = 40 (19.1 bits), Expect = 1.1e-06, Sum P(3) = 1.1e-06
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 1106 SAGKVLSSSELLARIR--GNQENAVGAGLERQFEVASSSANVARFADTRTSRSSK 1158
S+GK++ +LL R+R GN+ + + + R ++ + +F R S K
Sbjct: 781 SSGKLILLDKLLIRLRERGNRV-LIFSQMVRMLDILAEYLKYRQFPFQRLDGSIK 834
Score = 39 (18.8 bits), Expect = 4.0e-43, Sum P(3) = 4.0e-43
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 462 LRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNP 521
+++ K + E W S S D ++R KSS + + SDYE SR P
Sbjct: 136 VKRKKHKDEDWQMSGSGSP-SQSGSDSESEEEREKSSCDETE------SDYEPKNKSRKP 188
Query: 522 K 522
+
Sbjct: 189 Q 189
Score = 38 (18.4 bits), Expect = 3.7e-56, Sum P(4) = 3.7e-56
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 956 SANADDAVGDKENNLEIGSSRRKGKEKVDNIGDEVDE 992
S +D+ KEN EI S + K K+ GD ++
Sbjct: 1357 SEKSDEDDDKKENMDEITSVKHPNK-KIKTEGDSEEK 1392
>UNIPROTKB|F1P5V4 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005721 "centromeric
heterochromatin" evidence=IEA] [GO:0006346 "methylation-dependent
chromatin silencing" evidence=IEA] [GO:0010216 "maintenance of DNA
methylation" evidence=IEA] [GO:0031508 "centromeric heterochromatin
assembly" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IEA] [GO:0046651 "lymphocyte
proliferation" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216 OMA:ETFYTAI
GO:GO:0006346 GO:GO:0046651 GeneTree:ENSGT00550000075106
EMBL:AADN02027839 EMBL:AADN02027838 IPI:IPI00823178
Ensembl:ENSGALT00000008749 ArrayExpress:F1P5V4 Uniprot:F1P5V4
Length = 839
Score = 365 (133.5 bits), Expect = 4.4e-57, Sum P(3) = 4.4e-57
Identities = 81/205 (39%), Positives = 122/205 (59%)
Query: 700 EVEQILDGSRN-SLYGIDVM-RKICNHPDLLE-----REQSCQIPDYGNPERSEKMKVVA 752
EV +D N L I ++ RK CNHP L+E Q ++ D + S K ++
Sbjct: 547 EVSMPMDSEVNLKLQNIMMLLRKCCNHPYLIEYPLDPATQQFKV-DEDLVKNSGKFLLLD 605
Query: 753 QVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSS 812
++L K +GH+VL+F+Q MLDIL + G+++ R+DG R + ++NN
Sbjct: 606 RMLPELKKRGHKVLMFSQMTMMLDILMDYCYLRGFKFSRLDGSMSYSDREENMHQFNNDP 665
Query: 813 DVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITR 872
+VF+F+++T+ GGLG NLT A+ VII+D DWNP +D+QA++R RIGQ + V VYRL+T
Sbjct: 666 EVFLFLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTA 725
Query: 873 GTIEEKVYHRQIYKHFLTNKIL-KN 896
TI++K+ R K L I+ KN
Sbjct: 726 NTIDQKIVERAAAKRKLEKLIIHKN 750
Score = 231 (86.4 bits), Expect = 4.4e-57, Sum P(3) = 4.4e-57
Identities = 51/175 (29%), Positives = 92/175 (52%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
++IT++E L W Y ++DEGHRI+N N + K+ +++++TG P+Q
Sbjct: 327 VVITSFEIAMRDRNALQSCFWKYLIVDEGHRIKNMNCRLIRELKRFNADNKLLLTGTPLQ 386
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N L+ELWSL +F+ P L FE+ F + ++ A + +L ++
Sbjct: 387 NNLAELWSLLNFLLPDVFDDLKSFESWFDIT-SITETAE-DIIAKEKEQNILHMLHQILT 444
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSL 712
P+LLRR+K+DV ++P K E V++ L ++Q Y A + + + +L + +
Sbjct: 445 PFLLRRLKSDVALEVPPKREVVVYAPLAKKQETFYTA-IVNRTIRNLLGNNEEEV 498
Score = 129 (50.5 bits), Expect = 4.4e-57, Sum P(3) = 4.4e-57
Identities = 28/83 (33%), Positives = 45/83 (54%)
Query: 405 YQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQ 464
YQ G++WL L GI+ DEMGLGKTIQ ++ + + + P +V P++ L
Sbjct: 225 YQVEGMEWLRMLWENGINGILADEMGLGKTIQCIATIALMVERGVPGPFLVCGPLSTLPN 284
Query: 465 WKREAEKWYPSFHVELLHDSAQD 487
W E +++ P + L H + Q+
Sbjct: 285 WMSEFKRFTPEIPLMLYHGAQQE 307
>CGD|CAL0000831 [details] [associations]
symbol:orf19.1734 species:5476 "Candida albicans" [GO:0031011
"Ino80 complex" evidence=IEA] [GO:0042766 "nucleosome mobilization"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0043486
"histone exchange" evidence=IEA] [GO:0006348 "chromatin silencing
at telomere" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016584 "nucleosome
positioning" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0043618 "regulation of transcription from RNA polymerase II
promoter in response to stress" evidence=IEA] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR020838 Pfam:PF00176 Pfam:PF00271
Pfam:PF13892 PROSITE:PS51194 PROSITE:PS51413 SMART:SM00490
CGD:CAL0000831 GO:GO:0005524 GO:GO:0005634 GO:GO:0006355
GO:GO:0003677 GO:GO:0006281 GO:GO:0006351 GO:GO:0016568
GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:AACQ01000298 EMBL:AACQ01000297
RefSeq:XP_710247.1 RefSeq:XP_710254.1 STRING:Q59KI4 GeneID:3648140
GeneID:3648148 KEGG:cal:CaO19.1734 KEGG:cal:CaO19.9302 KO:K11665
Uniprot:Q59KI4
Length = 1387
Score = 328 (120.5 bits), Expect = 5.0e-57, Sum P(5) = 5.0e-57
Identities = 62/152 (40%), Positives = 97/152 (63%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K+ + ++L K GHR+L++ Q +M+ I E +L Y+Y R+DG T ++ R +
Sbjct: 1235 SGKLAKLDELLIDLKRGGHRILIYFQMTRMMQIFEEYLAYKSYKYIRLDGSTTIESRREM 1294
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+ + + ++FIF+L+T+ GGLG NLT A+ VI +D DWNP+ D QA +RA RIGQ + V
Sbjct: 1295 VQAWQTNPEIFIFMLSTRAGGLGLNLTSADTVIFYDSDWNPTIDSQAMDRAHRIGQTKQV 1354
Query: 865 TVYRLITRGTIEEKVYHRQIYKHFLTNKILKN 896
V+RL+TR TIE+K+ R K + ++ N
Sbjct: 1355 KVFRLVTRNTIEQKILERAKEKEEIQKLVVGN 1386
Score = 246 (91.7 bits), Expect = 5.0e-57, Sum P(5) = 5.0e-57
Identities = 72/231 (31%), Positives = 114/231 (49%)
Query: 512 YEGNLSSRN--PKKWDLLINRVLR-SESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHR 568
Y GN R K WD R + S +L+T+Y+ + ++W Y +LDE
Sbjct: 752 YWGNAKDRKILRKFWDRKSLRYDKDSPFHVLVTSYQLIVADIAYFQKMKWQYMILDEAQA 811
Query: 569 IRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP 628
I++ ++ L +R+++TG PIQN + ELW+L F+ P F FA
Sbjct: 812 IKSSSSSRWKSLLNLTCRNRLLLTGTPIQNSMQELWALLHFIMPSIFDSHDEFSDWFAKD 871
Query: 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQ 688
I +N S L R ++L+ P++LRR+K +V ++L K E ++C LT Q
Sbjct: 872 IESHAQSNTS-LDEQQLRRLHMILK----PFMLRRIKKNVQSELGDKVEIDVYCDLTTRQ 926
Query: 689 RAVY---RAFLASS-----EVEQILDGSRNSLYGIDVM-RKICNHPDLLER 730
+ +Y R+ ++ S E+E S +SL + + RK+CNHPDL ER
Sbjct: 927 KKLYQQLRSQISMSDTDLLELESNSTSSDSSLANLVMQFRKVCNHPDLFER 977
Score = 178 (67.7 bits), Expect = 5.0e-57, Sum P(5) = 5.0e-57
Identities = 47/122 (38%), Positives = 66/122 (54%)
Query: 387 TLEGGLKIPES--IFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL 444
TL G + IP+ + L +YQ G+ WL L+ Q GI+ DEMGLGKT+Q +S L L
Sbjct: 655 TLLGDITIPQPNMLKCTLKEYQLKGLNWLANLYEQGINGILADEMGLGKTVQSISVLAYL 714
Query: 445 HFS-NMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKK--RAKSSDTD 501
+ NM+ P +VV P + L W++E K+ P F V +A+D +K KS D
Sbjct: 715 AETYNMWGPFLVVTPASTLHNWQQEITKFVPEFKVLPYWGNAKDRKILRKFWDRKSLRYD 774
Query: 502 ND 503
D
Sbjct: 775 KD 776
Score = 44 (20.5 bits), Expect = 1.9e-22, Sum P(5) = 1.9e-22
Identities = 29/105 (27%), Positives = 41/105 (39%)
Query: 262 SNDPFSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRPFQRLKTPFRMPQSEESE 321
S+D FS D + + AQ+ S LD + L +L +PF L+ + QSE +
Sbjct: 860 SHDEFS---DWFAKDIESHAQSNTS---LDEQQLRRLHMILKPFM-LRRIKKNVQSELGD 912
Query: 322 -VEXXXXXXXXXXXXXXXXXXXXXIAREDTRLEENEDSRDSLDMS 365
VE I+ DT L E E + S D S
Sbjct: 913 KVEIDVYCDLTTRQKKLYQQLRSQISMSDTDLLELESNSTSSDSS 957
Score = 41 (19.5 bits), Expect = 5.0e-57, Sum P(5) = 5.0e-57
Identities = 19/91 (20%), Positives = 38/91 (41%)
Query: 48 KPHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRV--STKEDNDIDDGDSTE 105
+P S I P +S+ K+ K E E S+ +++ ST D+ ++ +
Sbjct: 319 EPGKGSPEIQPRRSSRPKVKRKAFEDELETADKQSSTQQVKKSQESTGRDHKRVKIENKQ 378
Query: 106 QDGREDEKSAVQASPNDMTLQHALTADRLKS 136
++ ++ ++ QA D A + KS
Sbjct: 379 EEQQQHQQQQ-QADEEDEAEAEAEAEQKPKS 408
Score = 41 (19.5 bits), Expect = 6.0e-23, Sum P(3) = 6.0e-23
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 60 STSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDI 98
+T Q+KLY +LR+ +I + + L ST D+ +
Sbjct: 923 TTRQKKLYQQLRS---QISMSDTDLLELESNSTSSDSSL 958
Score = 41 (19.5 bits), Expect = 6.0e-23, Sum P(3) = 6.0e-23
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 469 AEKWYPSFHV---ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPK 522
A W +V EL H S +D+ R ++ T+ + + YEG+ +N K
Sbjct: 1051 ATGWLQGINVSPNELKHYSQKDILSRAIEMQNKPTETEKLERINYLYEGDYIPKNKK 1107
Score = 39 (18.8 bits), Expect = 5.0e-57, Sum P(5) = 5.0e-57
Identities = 6/25 (24%), Positives = 15/25 (60%)
Query: 161 EHDKFIQDLVKEEHRPKRKSKEAQK 185
+H+K + D K+E + ++++K
Sbjct: 518 KHEKELLDKAKKEEEEREAKRQSRK 542
>UNIPROTKB|F1NS62 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=IEA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR002464
Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0003677 GO:GO:0006974 GO:GO:0006338
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:AADN02037964
EMBL:AADN02037962 EMBL:AADN02037963 IPI:IPI00573125
Ensembl:ENSGALT00000024254 Uniprot:F1NS62
Length = 895
Score = 523 (189.2 bits), Expect = 5.4e-57, Sum P(2) = 5.4e-57
Identities = 165/556 (29%), Positives = 265/556 (47%)
Query: 512 YEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRN 571
Y GN R + L N +S +L+TTYE L +W V+DE HR++N
Sbjct: 126 YVGNKEER----YKLQQNLKEQSHFRVLLTTYEICLKDAAFLKFFDWAALVVDEAHRLKN 181
Query: 572 PNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITV 631
N+ + +L +++TG PIQN L EL+SL F+ P + P + + V
Sbjct: 182 QNSLLYETLTELPVGFSLLLTGTPIQNSLQELYSLLSFIEPD---IFPRKQVKEFVE--- 235
Query: 632 GGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAV 691
Y A V A L +L+ P+LLRR+K++V A LPKK E VL+ ++ QR
Sbjct: 236 --YYQA----VEKESEPAKELHNLLQPFLLRRVKSEVTADLPKKVEVVLYHGMSALQRKY 289
Query: 692 YRAFLASS-EVEQILDGSRNSLYGIDV-MRKICNHPDLLE--REQSCQIPDYGNPERSEK 747
Y+A L + + G + L + + +RK HP L + +I D+ E S K
Sbjct: 290 YKAILTKDLDAFEGGTGRKVMLQNVLIQLRKCVAHPYLFNGVEPEPFEIGDH-IVEASGK 348
Query: 748 MKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDE 807
+ ++ ++L D GHRVLLF+Q ++LDIL+ ++ GY Y R+DG ++R I
Sbjct: 349 LCLLDKLLSFLYDGGHRVLLFSQMTKLLDILQDYMDYRGYSYERLDGSVRGEERHLAIKN 408
Query: 808 YNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVY 867
+ +F+F+L+T+ GG+G NLT A+ VI D D+NP D+QA RA RIGQ + V +
Sbjct: 409 FGQQP-IFVFLLSTRAGGVGMNLTAADTVIFTDSDFNPQNDLQAIARAHRIGQHKPVKII 467
Query: 868 RLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFFKARNMKDLFTLNDDGNGGSTETS 926
RLI R T+EE +Y R K LTN I++ Q K + DL L++ G +
Sbjct: 468 RLIGRDTVEEIIYRRAASKLRLTNAIVEGGQFALGVHKPQEASDL-QLSEILKFGLDKLL 526
Query: 927 NIFSQLSEDV---NVVGXXXXXXXXXXXXXAASANADDAVGDKENNLEIGSSRRKGKEKV 983
+ +DV N++G ++ D EN++ + + KE
Sbjct: 527 SSEGSTVQDVELENILGETKGGKWVMDAVLPCEEERNE--DDTENHMYVYEGKDYSKEPS 584
Query: 984 DNIGDEVDEETNILKSLFDANGIHS-AMNHDA---IMNAHDEEKMR-----LEEQASQVA 1034
D+ ++ K+L + A+ + A + D+ R EE ++
Sbjct: 585 REDKKAFDQLLDLQKALIEETSKEGRALRNKANTLLTGLRDQSTRRKHLLSAEELETRRK 644
Query: 1035 QRAAEALRQSRMLRSR 1050
+R A ++++++ R
Sbjct: 645 KRQEAAAKRAKLMEER 660
Score = 145 (56.1 bits), Expect = 5.4e-57, Sum P(2) = 5.4e-57
Identities = 31/72 (43%), Positives = 46/72 (63%)
Query: 405 YQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL--HFSNMYKPSIVVCPVTLL 462
YQ GV WL + + + G I+GDEMGLGKT Q +S L L +N + S+++CP+++L
Sbjct: 49 YQLDGVNWLVQCYQVQHGCILGDEMGLGKTCQTISLLLYLTKKLTNKER-SLILCPLSVL 107
Query: 463 RQWKREAEKWYP 474
WK E E++ P
Sbjct: 108 SNWKEELERFAP 119
Score = 43 (20.2 bits), Expect = 4.7e-05, Sum P(2) = 4.7e-05
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 499 DTDNDGEGSHDSDYEGNLSSRNPKKWDL-LINRVLRSESGLLITTYEQLRLLGEK 552
+ + D +H YEG S+ P + D +++L + L+ T ++ R L K
Sbjct: 561 ERNEDDTENHMYVYEGKDYSKEPSREDKKAFDQLLDLQKALIEETSKEGRALRNK 615
>UNIPROTKB|F1MFS2 [details] [associations]
symbol:CHD1L "Chromodomain-helicase-DNA-binding protein
1-like" species:9913 "Bos taurus" [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006338 "chromatin remodeling"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005886 GO:GO:0005524
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006974
GO:GO:0006338 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR002589 PROSITE:PS51154 GO:GO:0008026 IPI:IPI00710168
OMA:TCQTIAL GeneTree:ENSGT00670000098110 EMBL:DAAA02007335
Ensembl:ENSBTAT00000027762 Uniprot:F1MFS2
Length = 896
Score = 515 (186.3 bits), Expect = 6.3e-57, Sum P(2) = 6.3e-57
Identities = 135/370 (36%), Positives = 199/370 (53%)
Query: 532 LRSESG--LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRI 589
L+ ES +L+TTYE L W V+DE HR++N ++ + + V +
Sbjct: 142 LKQESRFHVLLTTYEICLKDASFLKSFPWSVLVVDEAHRLKNQSSLLHKTLSEFSVVFSL 201
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG PIQN L EL+SL FV P +F E V V Y + + A
Sbjct: 202 LLTGTPIQNSLQELYSLLSFVEPD------LFSKE-QVEDFVQRYQD-----IEKESESA 249
Query: 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASS-EVEQILDGS 708
L L+ P+LLRR+KA+V +LP+KTE V++ ++ Q+ Y+A L + +
Sbjct: 250 SELYKLLQPFLLRRVKAEVATELPRKTEVVIYHGMSALQKKYYKAILMKDLDAFENEMAK 309
Query: 709 RNSLYGI-DVMRKICNHPDLLE--REQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRV 765
+ L + +RK +HP L + + +I D+ E S K+ ++ ++L +GHRV
Sbjct: 310 KVKLQNVLSQLRKCVDHPYLFDGVEPEPFEIGDH-LIEASGKLHLLDKLLAFLYSKGHRV 368
Query: 766 LLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGG 825
LLF+Q QMLDIL+ +L GY Y R+DG ++R I + +F F L+T+ GG
Sbjct: 369 LLFSQMTQMLDILQDYLDYRGYSYERVDGSVRGEERHLAIKNFGQQP-IFTF-LSTRAGG 426
Query: 826 LGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIY 885
+G NLT A+ VI FD D+NP D+QA RA RIGQ + V V RLI R T+EE VY +
Sbjct: 427 VGMNLTAADTVIFFDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAAS 486
Query: 886 KHFLTNKILK 895
K LTN I++
Sbjct: 487 KLQLTNTIIE 496
Score = 153 (58.9 bits), Expect = 6.3e-57, Sum P(2) = 6.3e-57
Identities = 33/76 (43%), Positives = 47/76 (61%)
Query: 401 NLFDYQKVGVQWLWE-LHCQRAGGIIGDEMGLGKTIQVLS-FLGALHFSNMYKPSIVVCP 458
+L YQ GV WL + HCQ G I+GDEMGLGKT Q ++ F+ N P +++CP
Sbjct: 47 HLRPYQLQGVNWLAQCFHCQN-GCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCP 105
Query: 459 VTLLRQWKREAEKWYP 474
+++L WK E E++ P
Sbjct: 106 LSVLSNWKEEMERFAP 121
Score = 49 (22.3 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
Q++++KA MKDL ++ + N+ SQL + V+
Sbjct: 288 QKKYYKAILMKDLDAFENE-MAKKVKLQNVLSQLRKCVD 325
Score = 39 (18.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 483 DSAQDLGFRKKRAKSSDTDNDGEGSH 508
D+ +++ +RK +K T+ EG H
Sbjct: 474 DTVEEIVYRKAASKLQLTNTIIEGGH 499
>ASPGD|ASPL0000052010 [details] [associations]
symbol:AN1255 species:162425 "Emericella nidulans"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031934 "mating-type region
heterochromatin" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000070
"mitotic sister chromatid segregation" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0060303 "regulation of nucleosome density" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 EMBL:BN001308 GO:GO:0003677 EMBL:AACD01000017
GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR023779 PROSITE:PS00598 InterPro:IPR025260 Pfam:PF13907
KO:K11367 HOGENOM:HOG000207917 OrthoDB:EOG4TF3TB RefSeq:XP_658859.1
ProteinModelPortal:Q5BDX5 STRING:Q5BDX5
EnsemblFungi:CADANIAT00001368 GeneID:2877029 KEGG:ani:AN1255.2
OMA:GPRRMAI Uniprot:Q5BDX5
Length = 1517
Score = 555 (200.4 bits), Expect = 8.2e-57, Sum P(2) = 8.2e-57
Identities = 138/388 (35%), Positives = 217/388 (55%)
Query: 512 YEGNLSSRNP-KKWDLLIN-RVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRI 569
Y GN +SRN K+++L+++ R + +L+TTYE + + L W + +DE HR+
Sbjct: 526 YNGNEASRNVLKEYELMVDGNPRRPKFNVLLTTYEYVLVDSSFLSQFNWQFMAVDEAHRL 585
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629
+N ++++ + ++ + R+++TG PIQN L+EL +L DF+ PG + V +A+
Sbjct: 586 KNRDSQLYIKLQEFNSPARLLITGTPIQNNLAELSALLDFLNPGLVNV----DADM---- 637
Query: 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQR 689
L A L I P++LRR K V + LP KTE ++ L++ Q
Sbjct: 638 ---------DLNSEAASEKLAELTKAISPFMLRRTKTKVESDLPPKTEKIIRVELSDVQL 688
Query: 690 AVYRAFLASS--EVEQILDGSRNSLYGIDV-MRKICNHPDLLEREQSCQIPDYGNPERSE 746
Y+ L + + + G + SL I + ++K NHP + ++ +I + G+ R +
Sbjct: 689 EYYKNILTKNYAALNEGTKGQKQSLLNIMMELKKASNHPFMFPSAET-KILE-GSTRRED 746
Query: 747 ----------KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLT 796
KM ++ Q+L K GHRVL+F+Q +MLDIL ++ GY Y+R+DG
Sbjct: 747 VLRALITSSGKMMLLDQLLAKLKRDGHRVLIFSQMVKMLDILGDYMEYRGYTYQRLDGTI 806
Query: 797 PVKQRMALIDEYN--NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARER 854
P R I+ YN +SSD F FIL+T+ GGLG NL A+ VI+FD DWNP D+QA R
Sbjct: 807 PSASRRLAIEHYNAPDSSD-FAFILSTRAGGLGINLMTADTVILFDSDWNPQADLQAMAR 865
Query: 855 AWRIGQKQDVTVYRLITRGTIEEKVYHR 882
A RIGQ + V+VYRL+++ T+EE+V R
Sbjct: 866 AHRIGQTKPVSVYRLVSKDTVEEEVIER 893
Score = 122 (48.0 bits), Expect = 8.2e-57, Sum P(2) = 8.2e-57
Identities = 28/96 (29%), Positives = 48/96 (50%)
Query: 384 PFVTLEGGLKIPESIFNN-LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLG 442
PF ++G P + N L ++Q GV ++ + ++ DEMGLGKT+Q ++F+
Sbjct: 430 PFEPIKG---TPSFLHNGQLKEFQVKGVNFMAFNWVKNRNVVLADEMGLGKTVQTVAFIS 486
Query: 443 AL-HFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFH 477
L H P +VV P++ + W + W P +
Sbjct: 487 WLRHVRRQQGPFVVVVPLSTMPSWAETFDNWSPDLN 522
>UNIPROTKB|Q5FWR0 [details] [associations]
symbol:smarcad1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:8364 "Xenopus (Silurana) tropicalis"
[GO:0000729 "DNA double-strand break processing" evidence=ISS]
[GO:0035861 "site of double-strand break" evidence=ISS] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000729 HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439
HOVERGEN:HBG055804 OrthoDB:EOG4RV2QW EMBL:AAMC01061573
EMBL:AAMC01061574 EMBL:AAMC01061575 EMBL:BC089242
RefSeq:NP_001015697.1 UniGene:Str.34312 ProteinModelPortal:Q5FWR0
GeneID:548414 KEGG:xtr:548414 Xenbase:XB-GENE-492700
InParanoid:Q5FWR0 Uniprot:Q5FWR0
Length = 1003
Score = 325 (119.5 bits), Expect = 9.7e-57, Sum P(4) = 9.7e-57
Identities = 66/135 (48%), Positives = 91/135 (67%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K ++ ++L K +G RV+LF+Q MLDI+E FL + Y R+DG T + +R+ L
Sbjct: 830 SGKFNILEKLLSDIKKKGDRVVLFSQFTMMLDIIEVFLRHHQHRYVRLDGKTQISERIHL 889
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
IDE+N D+FIF+L+TK GGLG NLT AN VI+ D D NP D QA +R R+GQ ++V
Sbjct: 890 IDEFNTDMDIFIFLLSTKAGGLGINLTSANIVILHDIDCNPYNDKQAEDRCHRVGQTKEV 949
Query: 865 TVYRLITRGTIEEKV 879
V +LI +GTIEE +
Sbjct: 950 KVIKLIGKGTIEESM 964
Score = 222 (83.2 bits), Expect = 9.7e-57, Sum P(4) = 9.7e-57
Identities = 64/226 (28%), Positives = 119/226 (52%)
Query: 512 YEGNLSSRNPKKWDLLINRVLRSESGLLITTYE-QLRLLGEKLL--DVEWGYAVLDEGHR 568
Y G+ R ++D+L N+V+ E +++TTY + ++ L ++ +AV DEGH
Sbjct: 553 YYGSQEERKHLRYDIL-NKVV--EFNVIVTTYNCAISSAEDRSLFRRLKLNFAVFDEGHM 609
Query: 569 IRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP 628
++N +A L R+++TG P+QN L EL SL +FV P + +
Sbjct: 610 LKNMSAIRYQHLMTLNARSRLLLTGTPVQNNLLELMSLLNFVMPHMFS-----SSTSEIK 664
Query: 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQ 688
A ++ Q + ++ P++LRR+K++V QLP K + + FC ++++Q
Sbjct: 665 RLFSSKAKSTDEQTIFEKERIAHAKQIMKPFILRRVKSEVLKQLPPKQDKIKFCQMSKKQ 724
Query: 689 RAVYRAFLASSEVEQILDGS-RNS-LYGIDV-MRKICNHPDLLERE 731
+Y L +++++ +D + +NS L + + +RK+ NHP LL R+
Sbjct: 725 EQLYSDLL--NKLKKSIDATEKNSELCNVMMHLRKMANHP-LLHRQ 767
Score = 182 (69.1 bits), Expect = 9.7e-57, Sum P(4) = 9.7e-57
Identities = 36/95 (37%), Positives = 55/95 (57%)
Query: 395 PESIFNNLF--DYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKP 452
P + NL YQK+G+ WL LH + I+ DEMGLGKT+Q ++FL L+ + P
Sbjct: 465 PSIMSENLVLKPYQKIGLNWLALLHKHKVNMILADEMGLGKTVQAIAFLAHLYVTGDSGP 524
Query: 453 SIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQD 487
+VV P + + W RE +W PS ++ L + S ++
Sbjct: 525 HLVVVPASTMDNWIREFNQWCPSMNILLYYGSQEE 559
Score = 46 (21.3 bits), Expect = 9.7e-57, Sum P(4) = 9.7e-57
Identities = 16/63 (25%), Positives = 29/63 (46%)
Query: 85 DHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQL 144
D L+ + KE + +G + + D KS+ +A N + A+ + +K KK K +
Sbjct: 268 DALQNAAKKE---VSNGKEFSRSNKNDNKSSAKAKANQNS-NKAMAQNGVK--KKGKGKK 321
Query: 145 VKE 147
E
Sbjct: 322 YSE 324
Score = 40 (19.1 bits), Expect = 6.0e-42, Sum P(3) = 6.0e-42
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 481 LHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYE 513
+H+ +KK+ +DND S D D+E
Sbjct: 189 VHEGINGQTKKKKKIDRVSSDNDSSLSED-DWE 220
Score = 40 (19.1 bits), Expect = 1.1e-23, Sum P(3) = 1.1e-23
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 266 FSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRPF--QRLKT 310
FS+S R+ S A++ + + E + +PF +R+K+
Sbjct: 656 FSSSTSEIKRLFSSKAKSTDEQTIFEKERIAHAKQIMKPFILRRVKS 702
Score = 39 (18.8 bits), Expect = 1.0e-23, Sum P(2) = 1.0e-23
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 130 TADRLKSLKKTKAQLVKELSH 150
TADRL+++ K ++KE +H
Sbjct: 770 TADRLRTMSKL---MLKEPTH 787
>SGD|S000003131 [details] [associations]
symbol:RAD54 "DNA-dependent ATPase that stimulates strand
exchange" species:4932 "Saccharomyces cerevisiae" [GO:0005634
"nucleus" evidence=IEA;IMP;IDA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IDA] [GO:0015616 "DNA translocase activity"
evidence=IDA] [GO:0032392 "DNA geometric change" evidence=IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0032079 "positive regulation
of endodeoxyribonuclease activity" evidence=IDA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000722 "telomere maintenance via recombination"
evidence=IMP] [GO:0045002 "double-strand break repair via
single-strand annealing" evidence=IMP] [GO:0006338 "chromatin
remodeling" evidence=IDA] [GO:0030491 "heteroduplex formation"
evidence=IDA] [GO:0045003 "double-strand break repair via
synthesis-dependent strand annealing" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 SGD:S000003131 GO:GO:0005524
GO:GO:0005634 EMBL:BK006941 GO:GO:0006338 GO:GO:0004386 EMBL:Z48618
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 GO:GO:0045003 GO:GO:0000722
GO:GO:0015616 GO:GO:0032392 GO:GO:0032079 HOGENOM:HOG000204521
GO:GO:0030491 KO:K10875 OMA:LSEYFAL OrthoDB:EOG4T1MVP EMBL:M63232
EMBL:Z72685 PIR:JH0440 RefSeq:NP_011352.1 ProteinModelPortal:P32863
SMR:P32863 DIP:DIP-509N IntAct:P32863 MINT:MINT-605745
STRING:P32863 EnsemblFungi:YGL163C GeneID:852713 KEGG:sce:YGL163C
CYGD:YGL163c NextBio:972079 Genevestigator:P32863
GermOnline:YGL163C Uniprot:P32863
Length = 898
Score = 346 (126.9 bits), Expect = 2.4e-56, Sum P(4) = 2.4e-56
Identities = 74/210 (35%), Positives = 117/210 (55%)
Query: 721 ICNHPDLLEREQSCQIPD-YGNP---------ERSEKMKVVAQVL-KVWKDQGHRVLLFA 769
+ N D + E ++PD Y P + S K ++ + L K+ + +++L +
Sbjct: 620 LLNFEDEFDDEDDLELPDDYNMPGSKARDVQTKYSAKFSILERFLHKIKTESDDKIVLIS 679
Query: 770 QTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGT 828
Q LD++E Y R+DG + +R L+D +N+ FIF+L++K GG G
Sbjct: 680 NYTQTLDLIEKMCRYKHYSAVRLDGTMSINKRQKLVDRFNDPEGQEFIFLLSSKAGGCGI 739
Query: 829 NLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHF 888
NL GANR+I+ DPDWNP+ D QA R WR GQK+D +YR I+ GTIEEK++ RQ K
Sbjct: 740 NLIGANRLILMDPDWNPAADQQALARVWRDGQKKDCFIYRFISTGTIEEKIFQRQSMKMS 799
Query: 889 LTNKILKNPQQ-RRFFKARNMKDLFTLNDD 917
L++ ++ + R F + N++ LF N++
Sbjct: 800 LSSCVVDAKEDVERLFSSDNLRQLFQKNEN 829
Score = 284 (105.0 bits), Expect = 2.4e-56, Sum P(4) = 2.4e-56
Identities = 71/215 (33%), Positives = 115/215 (53%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
+LI +YE LR ++L + G + DEGHR++N ++ + R+I++G PIQ
Sbjct: 429 VLIISYETLRRNVDQLKNCNVGLMLADEGHRLKNGDSLTFTALDSISCPRRVILSGTPIQ 488
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N LSE ++L F PG LG F F PI G A+A+ +++ L ++
Sbjct: 489 NDLSEYFALLSFSNPGLLGSRAEFRKNFENPILRGRDADATDKEITKGEAQLQKLSTIVS 548
Query: 658 PYLLRRMKADVNAQ-LPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNS--LYG 714
+++RR D+ A+ LP K EHV+F +L Q +Y + S EV++++ G S L
Sbjct: 549 KFIIRRTN-DILAKYLPCKYEHVIFVNLKPLQNELYNKLIKSREVKKVVKGVGGSQPLRA 607
Query: 715 IDVMRKICNHPDLL------EREQSCQIPD-YGNP 742
I +++K+CNHP+LL + E ++PD Y P
Sbjct: 608 IGILKKLCNHPNLLNFEDEFDDEDDLELPDDYNMP 642
Score = 99 (39.9 bits), Expect = 2.4e-56, Sum P(4) = 2.4e-56
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 422 GGIIGDEMGLGKTIQVLSFLGAL-----HFSNMYKPSIVVCPVTLLRQWKREAEKW 472
G I+ DEMGLGKT+Q ++ + L + I+VCP +L+ W E KW
Sbjct: 330 GCIMADEMGLGKTLQCIALMWTLLRQGPQGKRLIDKCIIVCPSSLVNNWANELIKW 385
Score = 37 (18.1 bits), Expect = 2.4e-56, Sum P(4) = 2.4e-56
Identities = 7/45 (15%), Positives = 22/45 (48%)
Query: 151 FPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQK 195
+ + + I HD + + +E + + ++E K+++ Q++
Sbjct: 173 YDPSVDGEMIVHDTSMDNKEEESKKMIKSTQEKDNINKEKNSQEE 217
>TAIR|locus:2116747 [details] [associations]
symbol:PKR2 "PICKLE RELATED 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IEA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 GO:GO:0005634 EMBL:CP002687
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
InterPro:IPR009462 InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465
IPI:IPI00523018 RefSeq:NP_194918.2 UniGene:At.54572
ProteinModelPortal:F4JTF6 SMR:F4JTF6 PRIDE:F4JTF6
EnsemblPlants:AT4G31900.1 GeneID:829320 KEGG:ath:AT4G31900
OMA:SYWESES ArrayExpress:F4JTF6 Uniprot:F4JTF6
Length = 1202
Score = 508 (183.9 bits), Expect = 4.4e-56, Sum P(2) = 4.4e-56
Identities = 133/427 (31%), Positives = 228/427 (53%)
Query: 512 YEGNLSSRNPKKWD--LLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRI 569
Y G+ +R+ W+ + +S+ +L+TTYE + L ++W ++DEGHR+
Sbjct: 303 YTGDSEARDVI-WEHEFYFSEGRKSKFDVLLTTYEMVHPGISVLSPIKWTCMIIDEGHRL 361
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629
+N +++ Q + H +++TG P+QN L+EL++L F+ K G L F+
Sbjct: 362 KNQKSKLYSSLSQFTSKHIVLLTGTPLQNNLNELFALMHFLDADKFGSLEKFQD------ 415
Query: 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADV-NAQLPKKTEHVLFCSLTEEQ 688
N Q+S L ++ P+LLRR+K DV ++P K E +L ++ +Q
Sbjct: 416 -----INKEE-QISR-------LHQMLAPHLLRRLKKDVLKDKVPPKKELILRVDMSSQQ 462
Query: 689 RAVYRAFLASSEVEQILDGSRNSLYGIDVM--RKICNHPDLLEREQSCQIPDYGNP---- 742
+ VY+A + ++ Q+L R++ +M R++C+HP LL + + D
Sbjct: 463 KEVYKAVITNNY--QVLTKKRDAKISNVLMKLRQVCSHPYLLPDFEP-RFEDANEAFTKL 519
Query: 743 -ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQR 801
E S K++++ +++ K+QGHRVL++ Q Q L +LE + + Y R+DG +R
Sbjct: 520 LEASGKLQLLDKMMVKLKEQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPER 579
Query: 802 MALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQ 860
ID +N +S+ F F+L+T+ GG+G NL A+ VII+D DWNP D+QA R R+GQ
Sbjct: 580 QVRIDRFNAENSNRFCFLLSTRAGGIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQ 639
Query: 861 KQDVTVYRLITRGTIEEKVY----HRQIYKHFLTNKI-LKNPQQRRFFKARNMKDLFTLN 915
V +YRLI +GT+EE++ ++ + +H + K L + K + K+LF+
Sbjct: 640 TNKVMIYRLIHKGTVEERMMEITKNKMLLEHLVVGKQHLCQDELDDIIKYGS-KELFSEE 698
Query: 916 DDGNGGS 922
+D G S
Sbjct: 699 NDEAGRS 705
Score = 160 (61.4 bits), Expect = 4.4e-56, Sum P(2) = 4.4e-56
Identities = 37/96 (38%), Positives = 56/96 (58%)
Query: 395 PESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSI 454
PE + L YQ G+ +L ++ I+ DEMGLGKTIQ ++FL +L N+ P +
Sbjct: 218 PEFLTGTLHTYQLEGLNFLRYSWSKKTNVILADEMGLGKTIQSIAFLASLFEENL-SPHL 276
Query: 455 VVCPVTLLRQWKREAEKWYPSFHVELLH-DS-AQDL 488
VV P++ +R W+RE W P +V + DS A+D+
Sbjct: 277 VVAPLSTIRNWEREFATWAPHMNVVMYTGDSEARDV 312
>DICTYBASE|DDB_G0286219 [details] [associations]
symbol:DDB_G0286219 "putative TBP-associated factor"
species:44689 "Dictyostelium discoideum" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR016024
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0286219 GO:GO:0005524 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 InterPro:IPR021133
PROSITE:PS50077 GO:GO:0003677 EMBL:AAFI02000085 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
KO:K15192 OMA:TKQEGAI InterPro:IPR022707 Pfam:PF12054
RefSeq:XP_637789.1 ProteinModelPortal:Q54M42 STRING:Q54M42
PRIDE:Q54M42 EnsemblProtists:DDB0233434 GeneID:8625503
KEGG:ddi:DDB_G0286219 InParanoid:Q54M42 ProtClustDB:CLSZ2430112
Uniprot:Q54M42
Length = 2005
Score = 337 (123.7 bits), Expect = 6.5e-56, Sum P(5) = 6.5e-56
Identities = 69/170 (40%), Positives = 105/170 (61%)
Query: 763 HRVLLFAQTQQMLDILESFLIAS---GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFIL 819
HRVL+FAQ + MLDI+E+ L Y RMDG +R ++++++N+ + + +L
Sbjct: 1780 HRVLIFAQMKSMLDIVENELFKKHLPSVTYLRMDGSVETMKRHSIVNQFNSDPTIDVLLL 1839
Query: 820 TTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKV 879
TT VGGLG NLTGA+ VI + DWNP D+QA +RA RIGQK+ V VYRLIT GT+EEK+
Sbjct: 1840 TTHVGGLGLNLTGADTVIFLEHDWNPMKDLQAMDRAHRIGQKKVVNVYRLITSGTLEEKI 1899
Query: 880 YHRQIYKHFLTNKILKNPQQR-RFFKARNMKDLFTLNDDGNGGSTETSNI 928
Q +K + N ++ + + + +LF +DD ++++N+
Sbjct: 1900 MGLQKFKLNIANTVINHDNSSLQTMSTNELLNLFDYSDDQKSQQSKSTNL 1949
Score = 275 (101.9 bits), Expect = 6.5e-56, Sum P(5) = 6.5e-56
Identities = 60/170 (35%), Positives = 93/170 (54%)
Query: 535 ESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGA 594
+ +LI +Y+ +R + L ++ + Y +LDEGH I+N +++ K+LQ+ HR+I++G
Sbjct: 1486 DHNVLIMSYDIMRNDIDILSEMHFNYCILDEGHIIKNAKTKLTQAAKRLQSNHRLILSGT 1545
Query: 595 PIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRD 654
PIQN + ELWSLFDF+ PG LG +F ++ PI S L
Sbjct: 1546 PIQNNVLELWSLFDFLMPGFLGTEKLFNELYSKPILASKDPKCSTKDQEAGVLAMEALHR 1605
Query: 655 LIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQI 704
++P+LLRR+K DV A LP K +C+L+ Q +Y F + E I
Sbjct: 1606 QVLPFLLRRLKEDVLADLPPKIIQDRYCNLSPLQIRLYDYFSRTQFKETI 1655
Score = 116 (45.9 bits), Expect = 6.5e-56, Sum P(5) = 6.5e-56
Identities = 31/91 (34%), Positives = 47/91 (51%)
Query: 394 IPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA--LHFSNMYK 451
+P I L YQ+ GV WL L+ + GI+ D+MGLGKT+Q + + H Y+
Sbjct: 1369 LPIRINTELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQTICIIAGDDYHRRVNYQ 1428
Query: 452 ----------PSIVVCPVTLLRQWKREAEKW 472
PS+V+CP +L+ W E +K+
Sbjct: 1429 EKGTPDFAPLPSLVICPPSLVGHWFYEIKKF 1459
Score = 54 (24.1 bits), Expect = 6.5e-56, Sum P(5) = 6.5e-56
Identities = 26/102 (25%), Positives = 45/102 (44%)
Query: 48 KPHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQD 107
K D+ E +DP+ +E L + + ++ ++G + S ED DI +S
Sbjct: 166 KEFDEEE-LDPNMDPKELLLKQKKKLKKQLGLDDLPIKLESMDSLVEDKDIVLNNSKSAI 224
Query: 108 GREDEKSAVQASPN-DMTLQHALTADRLKSLKKTKAQ-LVKE 147
+ EK + + M L + R ++ K KA+ LVKE
Sbjct: 225 KAKKEKEEKEKKEDISMVLDTTGMSARERNKAKRKARNLVKE 266
Score = 49 (22.3 bits), Expect = 6.5e-56, Sum P(5) = 6.5e-56
Identities = 8/31 (25%), Positives = 15/31 (48%)
Query: 707 GSRNSLYGIDVMRKICNHPDLLEREQSCQIP 737
G+ + + +RK+C HP + + Q P
Sbjct: 1682 GATHIFQALQYLRKLCGHPSFVLNPEHPQYP 1712
Score = 38 (18.4 bits), Expect = 6.9e-48, Sum P(5) = 6.9e-48
Identities = 7/26 (26%), Positives = 16/26 (61%)
Query: 496 KSSDTDNDGEGSHDSDYEGNLSSRNP 521
KS++ ++G G+ ++ E + +S P
Sbjct: 562 KSNNNSSNGNGNGNNGNESSSNSSTP 587
Score = 38 (18.4 bits), Expect = 2.6e-23, Sum P(4) = 2.6e-23
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 701 VEQILDGSRNSLYGIDV 717
+EQ+LDGS+ Y + +
Sbjct: 1355 LEQLLDGSKVENYPLPI 1371
>DICTYBASE|DDB_G0280705 [details] [associations]
symbol:DDB_G0280705 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005634 "nucleus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001005
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013
PROSITE:PS51194 SMART:SM00298 SMART:SM00490 SMART:SM00717
dictyBase:DDB_G0280705 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006357 GO:GO:0003682 EMBL:AAFI02000037
GO:GO:0004003 InterPro:IPR016197 SUPFAM:SSF54160 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
KO:K14437 RefSeq:XP_641133.1 ProteinModelPortal:Q54UZ8
EnsemblProtists:DDB0220644 GeneID:8622691 KEGG:ddi:DDB_G0280705
InParanoid:Q54UZ8 OMA:YPHERID ProtClustDB:CLSZ2846801
Uniprot:Q54UZ8
Length = 2373
Score = 527 (190.6 bits), Expect = 8.0e-56, Sum P(5) = 8.0e-56
Identities = 132/370 (35%), Positives = 197/370 (53%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
+LITTYE L + W Y V+DE HR++N + ++++ + H +++TG P+Q
Sbjct: 628 VLITTYEMAITDRTHLSRIPWKYLVIDEAHRLKNKSCKLTIELRSYSFDHLLLLTGTPLQ 687
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N ELWSL +F+ P + L F E+ G +S QV + L+ ++
Sbjct: 688 NNTQELWSLLNFLDPKQFSNLDQFLLEY------GDLKESS--QVES-------LQAILK 732
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRN---SLYG 714
PYLLRRMK V + K E ++ LT Q+ YRA + G N SL
Sbjct: 733 PYLLRRMKERVEKSIAPKEETIVEVELTTVQKKYYRAIYEKNFSFLRKGGKSNQGPSLLN 792
Query: 715 IDV-MRKICNHPDL---LEREQSCQIPDYGNP-----ERSEKMKVVAQVLKVWKDQGHRV 765
I + +RK CNHP L +E+ ++ I D + S K+ ++ ++L K H+V
Sbjct: 793 IMMELRKCCNHPYLTKGVEQSETSSIKDKDQIFQKLIQASGKLVLIDKLLPKLKLGNHKV 852
Query: 766 LLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVG 824
L+F+Q +LDIL+ +L GY + R+DG R A ID ++ SD F+F+L T+ G
Sbjct: 853 LIFSQMVSVLDILDDYLTYRGYPHERIDGSIKGNDRQAAIDRFSKPDSDRFVFLLCTRAG 912
Query: 825 GLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQI 884
G+G NLT A+ VIIFD DWNP D+QA+ R RIGQ + V VYRL+T+ T E ++ +
Sbjct: 913 GIGINLTAADTVIIFDSDWNPQNDLQAQARCHRIGQDKMVKVYRLVTKNTYERLMFDKAS 972
Query: 885 YKHFLTNKIL 894
K L +L
Sbjct: 973 KKLGLDRAVL 982
Score = 161 (61.7 bits), Expect = 8.0e-56, Sum P(5) = 8.0e-56
Identities = 44/113 (38%), Positives = 55/113 (48%)
Query: 400 NNLFDYQKVGVQWL---WELHCQRAGGIIGDEMGLGKTIQVLSFLGALH-FSNMYKPSIV 455
N L YQ G+ WL W H QR I+GDEMGLGKT+Q +S L L + P +V
Sbjct: 507 NKLRPYQLEGLNWLSFCW--HEQR-NSILGDEMGLGKTVQSVSILETLRKVHGIRGPFLV 563
Query: 456 VCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGF-RKKRAKSSDTDNDGEGS 507
V P+T + WKRE E W + + HDS R D D G G+
Sbjct: 564 VAPLTTIPHWKREFENW-TDMNALVYHDSGAGRPICRNYEFYLKDKDGGGGGA 615
Score = 50 (22.7 bits), Expect = 8.0e-56, Sum P(5) = 8.0e-56
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 93 KEDNDIDDGDSTEQDGREDEKSAV-QASPNDMTLQHALTADRLKSLKKTKAQLVKELS 149
+E++D +D D + R K++V + P + + K TK ++KE S
Sbjct: 119 EEEDDSEDSDDLSKKSRGRPKASVSKPPPPKVPKSKPIAKTNNKKNSNTKEVIIKEKS 176
Score = 47 (21.6 bits), Expect = 1.6e-55, Sum P(5) = 1.6e-55
Identities = 25/117 (21%), Positives = 47/117 (40%)
Query: 78 GAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSL 137
G+V+ L + ++ ++ + +E + EDE+ + N ++ +++K
Sbjct: 211 GSVSKKAAALAKKKNNVQSESEESEESESESEEDEEEEEEKGANKNKKKNE-KENQVKGE 269
Query: 138 KKTKAQLVKELSHFPKGITSKGIEHDKFIQ----DLVKEEHR-PKRKSKEAQKPGKD 189
+ KE I E DKF Q + +K+E+ K K KP KD
Sbjct: 270 GEDDDN-EKEEDGENNTIDESDDEIDKFKQMDPIERIKKEYSIEKILDKRYIKPNKD 325
Score = 44 (20.5 bits), Expect = 8.0e-56, Sum P(5) = 8.0e-56
Identities = 21/100 (21%), Positives = 42/100 (42%)
Query: 960 DDAVGDKENNLEIGSSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDAIMNAH 1019
DD D ++ E ++ +E+ DN EE + K A + + ++
Sbjct: 1463 DDGGDDSKSKTESTTTTTIDEEEEDN------EEEGV-KKWPSAKVLSHRVKR--LLRTM 1513
Query: 1020 DEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDISVPTWT 1059
D K +LE+++ ++ + +Q L+ R + V WT
Sbjct: 1514 DFFKNKLEKESKNEKKKIEKEKKQEEKLKKRQEPKVE-WT 1552
Score = 42 (19.8 bits), Expect = 1.6e-55, Sum P(5) = 1.6e-55
Identities = 13/48 (27%), Positives = 22/48 (45%)
Query: 1035 QRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGSTVGSQ 1082
+ +++ QS DD S G +GT G +S+ K + T G +
Sbjct: 1117 EESSDDEEQSDFEPDEDDESTRDIGGINGTIGGQNSINKSW--TAGER 1162
Score = 42 (19.8 bits), Expect = 1.2e-54, Sum P(6) = 1.2e-54
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 94 EDNDIDDGDSTEQDGREDE 112
E+ND++ D E++ E+E
Sbjct: 96 ENNDVEMKDEEEEEEEEEE 114
Score = 40 (19.1 bits), Expect = 8.0e-56, Sum P(5) = 8.0e-56
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 1077 STVGSQLIKPLEGSSSNKTGEFNSF 1101
S +G+ I +++N T FN+F
Sbjct: 2283 SFMGNSSISYQSNNNNNNTNSFNNF 2307
Score = 40 (19.1 bits), Expect = 1.2e-54, Sum P(6) = 1.2e-54
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 353 EENEDSRDSLDMS 365
EE +DS DS D+S
Sbjct: 119 EEEDDSEDSDDLS 131
Score = 39 (18.8 bits), Expect = 1.0e-55, Sum P(5) = 1.0e-55
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 1196 VPSKDLPLFKNLLKEIATLQKDPS 1219
+P+ + L +L+KE A+L+K S
Sbjct: 1599 IPTTKIELNWDLIKEKASLKKKSS 1622
Score = 38 (18.4 bits), Expect = 3.0e-54, Sum P(6) = 3.0e-54
Identities = 13/67 (19%), Positives = 29/67 (43%)
Query: 52 KSESIDPSSTSQEKLYNKLRAVEFEI----GAVASTVDHLRRVSTKEDNDIDDGDSTEQD 107
++ ++ P+ K+ N + E +I G ++ L+ E+N+ D D+
Sbjct: 5 ENSNVQPTRKKGAKILNLWKG-EQDILNYSGLSRRSIAALKNKEILENNNDSDSDNNNNK 63
Query: 108 GREDEKS 114
++ KS
Sbjct: 64 NKKSTKS 70
Score = 38 (18.4 bits), Expect = 0.00013, Sum P(5) = 0.00013
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 498 SDTDNDGEGSHD 509
+D DN+ EG H+
Sbjct: 1351 NDNDNNDEGYHE 1362
Score = 37 (18.1 bits), Expect = 4.0e-05, Sum P(3) = 4.0e-05
Identities = 6/24 (25%), Positives = 15/24 (62%)
Query: 497 SSDTDNDGEGSHDSDYEGNLSSRN 520
+++ +N+ S+D++Y N + N
Sbjct: 2310 NNNNNNNSNNSNDNNYNKNNNGYN 2333
>UNIPROTKB|F1SC64 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:CU468514
Ensembl:ENSSSCT00000011474 Uniprot:F1SC64
Length = 838
Score = 352 (129.0 bits), Expect = 9.7e-56, Sum P(3) = 9.7e-56
Identities = 75/185 (40%), Positives = 111/185 (60%)
Query: 717 VMRKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVWKDQGHRVLLFAQTQ 772
++RK CNHP L+E ++ E S K ++ ++L K +GH+VLLF+Q
Sbjct: 566 LLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKIRGHKVLLFSQMT 625
Query: 773 QMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTG 832
+MLDIL + + + R+DG +R + +N DVFIF+++T+ GGLG NLT
Sbjct: 626 RMLDILMDYCHFRNFNFSRLDGSMSYTEREKNMHSFNTDPDVFIFLVSTRAGGLGINLTA 685
Query: 833 ANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNK 892
A+ VII+D DWNP +D+QA++R RIGQ + V VYRL+T TI++K+ R K L
Sbjct: 686 ADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKL 745
Query: 893 IL-KN 896
I+ KN
Sbjct: 746 IIHKN 750
Score = 230 (86.0 bits), Expect = 9.7e-56, Sum P(3) = 9.7e-56
Identities = 51/160 (31%), Positives = 87/160 (54%)
Query: 538 LLITTYEQLRLLGEKLLD-VEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPI 596
++IT++E + + +L W Y ++DEGHRI+N + K+ +++++TG P+
Sbjct: 328 VVITSFE-IAMRDRNVLQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPL 386
Query: 597 QNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLI 656
QN LSELWSL +F+ P L FE+ F IT + +L ++
Sbjct: 387 QNNLSELWSLLNFLLPDVFDDLKSFESWF--DITSLSETAEDIIAKEREQNVLHMLHQIL 444
Query: 657 MPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFL 696
P+LLRR+K+DV ++P K E V++ L+++Q Y A +
Sbjct: 445 TPFLLRRLKSDVALEVPPKREVVVYAPLSKKQEVFYTAIV 484
Score = 131 (51.2 bits), Expect = 9.7e-56, Sum P(3) = 9.7e-56
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 405 YQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQ 464
YQ G++WL L GI+ DEMGLGKT+Q ++ + + + P +V P++ L
Sbjct: 226 YQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPN 285
Query: 465 WKREAEKWYPSFHVELLHDSAQD 487
W E +++ P L H S Q+
Sbjct: 286 WMAEFQRFTPEIPTMLYHGSQQE 308
Score = 41 (19.5 bits), Expect = 3.5e-27, Sum P(2) = 3.5e-27
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 125 LQHA----LTADRLKSLKKTKAQLVKELSHF 151
LQH L D +K K +L++EL F
Sbjct: 343 LQHCYWKYLIVDEGHRIKNMKCRLIRELKRF 373
Score = 40 (19.1 bits), Expect = 1.5e-22, Sum P(3) = 1.5e-22
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 791 RMDGLTPVKQRMALIDEYNNSSD 813
+M+ P+K++M + NS D
Sbjct: 809 QMNASGPIKEKMGIFKILENSED 831
>TAIR|locus:2041644 [details] [associations]
symbol:CHR5 "chromatin remodeling 5" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR000330
InterPro:IPR000953 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0009506 GO:GO:0005524 GO:GO:0005634
EMBL:CP002685 GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197
SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR023780 InterPro:IPR025260 Pfam:PF13907 KO:K11367
IPI:IPI00521189 RefSeq:NP_178970.3 UniGene:At.40665 PRIDE:F4IV99
EnsemblPlants:AT2G13370.1 GeneID:815823 KEGG:ath:AT2G13370
OMA:ARNTKSY Uniprot:F4IV99
Length = 1724
Score = 537 (194.1 bits), Expect = 1.0e-55, Sum P(4) = 1.0e-55
Identities = 127/368 (34%), Positives = 206/368 (55%)
Query: 539 LITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQN 598
L+TTYE + L ++W Y ++DE HR++N A++ + T +++++TG P+QN
Sbjct: 735 LLTTYEVVLKDKAVLSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLITGTPLQN 794
Query: 599 KLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMP 658
+ ELW+L F+ PGK + EF V Y N S S + LR P
Sbjct: 795 SVEELWALLHFLDPGKFKN----KDEF-----VENYKNLSSFNESELANLHLELR----P 841
Query: 659 YLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASS--EVEQILDGSRNSLYGID 716
++LRR+ DV LP K E +L ++ Q+ Y+ L + ++ + + G++ SL I
Sbjct: 842 HILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHDLNKGVRGNQVSLLNIV 901
Query: 717 V-MRKICNHPDLLEREQ---SCQIPDYGNPER----SEKMKVVAQVLKVWKDQGHRVLLF 768
V ++K CNHP L E I D ++ S K+ ++ ++L ++ HRVL+F
Sbjct: 902 VELKKCCNHPFLFESADHGYGGDINDNSKLDKIILSSGKLVILDKLLVRLRETKHRVLIF 961
Query: 769 AQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLG 827
+Q +MLDIL +L G++++R+DG T + R +D +N +SD F F+L+T+ GGLG
Sbjct: 962 SQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPASDDFCFLLSTRAGGLG 1021
Query: 828 TNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKH 887
NL A+ V+IFD DWNP D+QA RA RIGQ++ V +YR +T ++EE++ R K
Sbjct: 1022 INLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEEILERAKRKM 1081
Query: 888 FLTNKILK 895
L + +++
Sbjct: 1082 VLDHLVIQ 1089
Score = 140 (54.3 bits), Expect = 1.0e-55, Sum P(4) = 1.0e-55
Identities = 32/86 (37%), Positives = 45/86 (52%)
Query: 395 PESIFNN-LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYK-P 452
PE + L DYQ G+ +L I+ DEMGLGKT+Q +S LG L + P
Sbjct: 617 PEWLIGGTLRDYQLEGLNFLVNSWLNDTNVILADEMGLGKTVQSVSMLGFLQNTQQIPGP 676
Query: 453 SIVVCPVTLLRQWKREAEKWYPSFHV 478
+VV P++ L W +E KW P ++
Sbjct: 677 FLVVVPLSTLANWAKEFRKWLPGMNI 702
Score = 64 (27.6 bits), Expect = 1.6e-47, Sum P(3) = 1.6e-47
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 482 HDSAQDLGFRKKRAKSSD-TDNDGEGSHD---SDYEGNLSSRNPK 522
+D+A D G KK + D +D D E + SDYE + ++ PK
Sbjct: 260 YDAADDGGASKKHGQGWDVSDEDPESDEEIDLSDYEDDYGTKKPK 304
Score = 50 (22.7 bits), Expect = 4.7e-46, Sum P(3) = 4.7e-46
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 481 LHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWD 525
+H +++ K SD+++D G D DYE +P+ D
Sbjct: 212 VHSNSRTSRAIHKNIHYSDSNHDHNGDADMDYEEEEDEDDPEDAD 256
Score = 49 (22.3 bits), Expect = 1.0e-55, Sum P(4) = 1.0e-55
Identities = 20/73 (27%), Positives = 31/73 (42%)
Query: 80 VASTVDHLRRVSTKEDNDIDD-GDSTEQDGREDEKSAVQASPNDMTLQHALTA---DRLK 135
V S+ +R+VS E D +D D + ++D+ A + L H L D
Sbjct: 380 VRSSTRSVRKVSYVESEDSEDIDDGKNRKNQKDDIEEEDADVIEKVLWHQLKGMGEDVQT 439
Query: 136 SLKKTKAQLVKEL 148
+ K T LV +L
Sbjct: 440 NNKSTVPVLVSQL 452
Score = 40 (19.1 bits), Expect = 1.0e-55, Sum P(4) = 1.0e-55
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 1087 LEG-SSSNKTGEFNSFGAGASA-GKVLSSSELLARIRGNQ 1124
++G S +TG F G G + ++ELL R++G Q
Sbjct: 1316 IDGCKESVETGNFEPKGPVLDFFGVPVKANELLKRVQGLQ 1355
Score = 39 (18.8 bits), Expect = 1.1e-54, Sum P(4) = 1.1e-54
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 102 DSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSH 150
D +++D DE+ + +D + + K +K+ A L ++ H
Sbjct: 277 DVSDEDPESDEEIDLSDYEDDYGTKKPKVRQQSKGFRKSSAGLERKSFH 325
Score = 39 (18.8 bits), Expect = 3.3e-44, Sum P(4) = 3.3e-44
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 491 RKKRAKS-SDTDNDGEGSHDSDYEG 514
R+KR S D D++ + +D+D EG
Sbjct: 329 RQKRKTSYQDDDSEEDSENDND-EG 352
Score = 37 (18.1 bits), Expect = 1.1e-44, Sum P(3) = 1.1e-44
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 499 DTDNDGEGSHDSDYEGNLSSRN-PK 522
D DN + H Y +SR+ PK
Sbjct: 183 DEDNQSDHVHYKGYSNPTNSRSLPK 207
>UNIPROTKB|E1BCV0 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046651 "lymphocyte proliferation" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IEA] [GO:0010216 "maintenance of DNA methylation"
evidence=IEA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=IEA] [GO:0005721 "centromeric heterochromatin"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001655 "urogenital system
development" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0003682
GO:GO:0001655 GO:GO:0004386 GO:GO:0005721 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0031508 GO:GO:0010216
OMA:ETFYTAI GO:GO:0006346 GO:GO:0046651
GeneTree:ENSGT00550000075106 EMBL:DAAA02058849 EMBL:DAAA02058850
EMBL:DAAA02058851 IPI:IPI00710948 Ensembl:ENSBTAT00000007848
Uniprot:E1BCV0
Length = 816
Score = 358 (131.1 bits), Expect = 1.1e-55, Sum P(4) = 1.1e-55
Identities = 76/185 (41%), Positives = 111/185 (60%)
Query: 717 VMRKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVWKDQGHRVLLFAQTQ 772
++RK CNHP L+E ++ E S K ++ ++L K +GH+VLLF+Q
Sbjct: 544 LLRKCCNHPYLIEYPIDPVTQEFKVDEELVTNSGKFLILDRMLPELKTRGHKVLLFSQMT 603
Query: 773 QMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTG 832
+MLDIL + + + R+DG +R I +N DVFIF+++T+ GGLG NLT
Sbjct: 604 RMLDILMDYCHFRNFNFSRLDGSMSYSEREKNIHSFNTDPDVFIFLVSTRAGGLGINLTA 663
Query: 833 ANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNK 892
A+ VII+D DWNP +D+QA++R RIGQ + V VYRL+T TI++K+ R K L
Sbjct: 664 ADTVIIYDSDWNPQSDLQAQDRCHRIGQTRPVVVYRLVTANTIDQKIVERAAAKRKLEKL 723
Query: 893 IL-KN 896
I+ KN
Sbjct: 724 IIHKN 728
Score = 230 (86.0 bits), Expect = 1.1e-55, Sum P(4) = 1.1e-55
Identities = 51/159 (32%), Positives = 85/159 (53%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
++IT++E L + W Y ++DEGHRI+N + K+ +++++TG P+Q
Sbjct: 306 VVITSFEIAMRDRTTLQNCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQ 365
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N LSELWSL +F+ P L FE+ F IT + +L ++
Sbjct: 366 NNLSELWSLLNFLLPDVFDDLKSFESWF--DITSLSETAEDIIAKEREQNVLHMLHQILT 423
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFL 696
P+LLRR+K+DV ++P K E V++ L+++Q Y A +
Sbjct: 424 PFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIV 462
Score = 127 (49.8 bits), Expect = 1.1e-55, Sum P(4) = 1.1e-55
Identities = 27/83 (32%), Positives = 44/83 (53%)
Query: 405 YQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQ 464
YQ G++WL L GI+ DEMGLGKT+Q ++ + + + P +V P++ L
Sbjct: 204 YQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPN 263
Query: 465 WKREAEKWYPSFHVELLHDSAQD 487
W E +++ P L H + Q+
Sbjct: 264 WMAEFKRFTPEIPTMLYHGTQQE 286
Score = 41 (19.5 bits), Expect = 6.4e-22, Sum P(4) = 6.4e-22
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 791 RMDGLTPVKQRMALIDEYNNSSD 813
+M+ PVK++M + NS D
Sbjct: 787 QMNASGPVKEKMGIFKILENSED 809
Score = 40 (19.1 bits), Expect = 1.1e-55, Sum P(4) = 1.1e-55
Identities = 19/65 (29%), Positives = 30/65 (46%)
Query: 250 NKQNVPDEQEARSN---DPFSASVDRALRMMSEAAQA-RPSTKLL-DPESLPKLDGPTRP 304
NK+ DE + SN + + D ++ +Q R +TK DP + K +G P
Sbjct: 133 NKKENEDESSS-SNMCVEDLQKNKDSNSKIKDRLSQTVRQNTKFFFDP--VRKCNGQPVP 189
Query: 305 FQRLK 309
FQ+ K
Sbjct: 190 FQQPK 194
Score = 39 (18.8 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 129 LTADRLKSLKKTKAQLVKELSHF 151
L D +K K +L++EL F
Sbjct: 329 LIVDEGHRIKNMKCRLIRELKRF 351
>ZFIN|ZDB-GENE-050522-499 [details] [associations]
symbol:smarcad1 "SWI/SNF-related, matrix-associated
actin-dependent regulator of chromatin, subfamily a, containing
DEAD/H box 1" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0043044 "ATP-dependent chromatin
remodeling" evidence=ISS] [GO:0000729 "DNA double-strand break
processing" evidence=ISS] [GO:0035861 "site of double-strand break"
evidence=ISS] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005694 "chromosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-499 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000729 HOGENOM:HOG000172362
GO:GO:0035861 GeneTree:ENSGT00630000089890 OMA:KEERYMA
HOVERGEN:HBG055804 EMBL:AL807792 IPI:IPI00492619 UniGene:Dr.3950
ProteinModelPortal:B0R061 Ensembl:ENSDART00000091409
ArrayExpress:B0R061 Bgee:B0R061 Uniprot:B0R061
Length = 972
Score = 295 (108.9 bits), Expect = 1.1e-55, Sum P(4) = 1.1e-55
Identities = 58/133 (43%), Positives = 89/133 (66%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K ++ + L K++G RV+LF+Q MLDI+E L ++Y R+DG TP+ +R+ L
Sbjct: 800 SGKFALLTKTLAKLKEKGDRVVLFSQFTMMLDIVEILLKHLDHQYVRLDGSTPMAERIGL 859
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
ID+YN + ++F+F+L+T+ GG G NL AN VI+ D D NP D QA +R R+GQ + V
Sbjct: 860 IDKYNTNPEIFVFLLSTRAGGQGINLASANTVILHDIDCNPFNDKQAEDRCHRMGQTRTV 919
Query: 865 TVYRLITRGTIEE 877
V +LI++ +IE+
Sbjct: 920 QVIKLISKDSIED 932
Score = 222 (83.2 bits), Expect = 1.1e-55, Sum P(4) = 1.1e-55
Identities = 67/231 (29%), Positives = 121/231 (52%)
Query: 512 YEGNLSSRNPKKWDLLINRVLRSESGLLITTY------EQLRLLGEKLLDVEWGYAVLDE 565
Y G++ R + D+L + + ++++TY + R L KL + YAV DE
Sbjct: 527 YYGSVEDRKYLRQDILTGLI---DFNIIVSTYNLTIGNDHDRSLFRKL---KLKYAVFDE 580
Query: 566 GHRIRNPNAEISLVCKQLQTV---HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFE 622
GH ++N N SL + L T+ HR+++TG P+QN L EL SL +F+ P +F
Sbjct: 581 GHMLKNMN---SLRYRHLMTINAEHRLLLTGTPLQNNLLELMSLLNFIMPS------MFS 631
Query: 623 AEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM-PYLLRRMKADVNAQLPKKTEHVLF 681
+ + + ++ S + S+ ++ + LIM P++LRR+K++V +LP K E +
Sbjct: 632 SSTSQISKM--FSTRSSEEESSFHKDRIAQARLIMKPFILRRVKSEVLKELPPKMEKIEM 689
Query: 682 CSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDV-MRKICNHPDLLERE 731
C +++ Q +Y +++ +G + L + + +RK+ NHP LL R+
Sbjct: 690 CPMSDAQHKLYDILF--KRLKKTPNGDKRELCNVMMQLRKMANHP-LLHRQ 737
Score = 189 (71.6 bits), Expect = 1.1e-55, Sum P(4) = 1.1e-55
Identities = 39/100 (39%), Positives = 58/100 (58%)
Query: 390 GGLKIPESIFNNLF--DYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS 447
G +K P+ + +NL YQ +G++WL LH + GI+ DEMGLGKTIQ ++FL L+
Sbjct: 434 GSIKQPKVLNSNLKLQAYQLIGLKWLILLHQHKLSGILADEMGLGKTIQAIAFLAHLYEK 493
Query: 448 NMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQD 487
+ P ++ P + L W RE W PS V + + S +D
Sbjct: 494 GIKGPHLITVPSSTLDNWVRELGLWCPSLKVLIYYGSVED 533
Score = 60 (26.2 bits), Expect = 1.1e-55, Sum P(4) = 1.1e-55
Identities = 38/199 (19%), Positives = 75/199 (37%)
Query: 91 STKEDNDIDDGDSTEQDGREDEKSAVQASPNDMT-LQHALTADRLKSLKKTKAQLVKELS 149
S ED D +D +S E+ RE +++ ++ + ++ + D LK + L
Sbjct: 156 SESEDEDSEDEES-EEPSREKQEALLKKLKRKLPDIEKEVLRDILKEHDWDYENALGSLL 214
Query: 150 HFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTVSVXX-----XXX 204
F TS E+ K Q K H ++ K Q+P S + +
Sbjct: 215 VFSSTDTSSP-ENQKSKQKS-KSSHSKEKTDKITQRPSGSSSLSRWLTAASSHVPEVSSM 272
Query: 205 XXXXXXXXXXGFVETKRDELVRK-GILTPFHKLKGFERCIQQPGPSNKQNVPDEQEARSN 263
+K RK G P + + E + S+ ++ D+Q++
Sbjct: 273 SALKTQKSALSKSTSKNSSFKRKRGDEMPLNDVSASED--EDEIDSDVDSMSDDQDSEDE 330
Query: 264 DPFSASV-DRALRMMSEAA 281
D S ++ D+ ++ + +A+
Sbjct: 331 DSISGTLQDKIIQFLQDAS 349
Score = 53 (23.7 bits), Expect = 5.9e-55, Sum P(4) = 5.9e-55
Identities = 26/89 (29%), Positives = 40/89 (44%)
Query: 87 LRRVSTKEDND-ID-DGDSTEQDGREDEKSAVQASPNDMTLQHALTA--DRLKSLKKT-- 140
L VS ED D ID D DS D +++ ++ + D +Q A D L +
Sbjct: 302 LNDVSASEDEDEIDSDVDSMSDDQDSEDEDSISGTLQDKIIQFLQDASLDELALISGCSI 361
Query: 141 -KAQLVKELSHFPKGITSKGIEHDKFIQD 168
KAQ + L F T K ++ ++F +D
Sbjct: 362 KKAQKIISLRPFN---TWKDVK-EQFFKD 386
Score = 46 (21.3 bits), Expect = 3.2e-54, Sum P(4) = 3.2e-54
Identities = 28/151 (18%), Positives = 56/151 (37%)
Query: 51 DKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDG-------DS 103
+ ES +PS QE L KL+ ++ + V LR + + D D ++ S
Sbjct: 164 EDEESEEPSREKQEALLKKLKR---KLPDIEKEV--LRDILKEHDWDYENALGSLLVFSS 218
Query: 104 TEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHD 163
T+ E++KS ++ + + R L SH P+ + ++
Sbjct: 219 TDTSSPENQKSKQKSKSSHSKEKTDKITQRPSGSSSLSRWLTAASSHVPEVSSMSALKTQ 278
Query: 164 KFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQ 194
K ++ ++ + + P D S +
Sbjct: 279 KSALSKSTSKNSSFKRKRGDEMPLNDVSASE 309
Score = 38 (18.4 bits), Expect = 2.1e-53, Sum P(4) = 2.1e-53
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 345 IAREDTRLEENEDSRD 360
I R D+ E+EDS D
Sbjct: 150 IQRSDSSESEDEDSED 165
>UNIPROTKB|F1Q2U2 [details] [associations]
symbol:CHD1L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR002464 Pfam:PF00176 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR002589
PROSITE:PS51154 GO:GO:0008026 OMA:TCQTIAL
GeneTree:ENSGT00670000098110 EMBL:AAEX03011032
Ensembl:ENSCAFT00000017488 Uniprot:F1Q2U2
Length = 898
Score = 511 (184.9 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 134/368 (36%), Positives = 192/368 (52%)
Query: 532 LRSESG--LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRI 589
L+ ES +L+TTYE L W V+DE HR++N N+ + + V +
Sbjct: 142 LKQESRFHVLLTTYEICLKDSSFLKSFPWSVLVVDEAHRLKNQNSLLHKTLLEFSVVFSL 201
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG PIQN L EL+SL FV P +F E VG + + A
Sbjct: 202 LLTGTPIQNSLQELYSLLSFVEPD------LFPKE-----QVGDFVQRYQ-DIEKESDSA 249
Query: 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASS-EVEQILDGS 708
L L+ P+LLRR+KA+V +LPKKTE VL+ ++ Q+ Y+A L + +
Sbjct: 250 SELHKLLQPFLLRRVKAEVATELPKKTEVVLYHGMSALQKKYYKAILMKDLDAFESEMAK 309
Query: 709 RNSLYGI-DVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLL 767
+ L + +RK +HP L E E K +A + ++ +GHRVLL
Sbjct: 310 KVKLQNVLSQLRKCVDHPYLFEGETVPFFLTLLFMTTPLKNLELAALSFLFLARGHRVLL 369
Query: 768 FAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLG 827
F+Q QMLDIL+ ++ GY Y R+DG ++R I + VF+F+L+T+ GG+G
Sbjct: 370 FSQMTQMLDILQDYMDYRGYSYERVDGSVRGEERHLAIKNFGQQP-VFVFLLSTRAGGVG 428
Query: 828 TNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKH 887
NLT A+ VI D D+NP D+QA RA RIGQ + V V RLI R T+EE VY + K
Sbjct: 429 MNLTAADTVIFVDSDFNPQNDLQAAARAHRIGQNKSVKVIRLIGRDTVEEIVYRKAASKL 488
Query: 888 FLTNKILK 895
LTN I++
Sbjct: 489 QLTNAIIE 496
Score = 145 (56.1 bits), Expect = 1.3e-55, Sum P(2) = 1.3e-55
Identities = 32/75 (42%), Positives = 44/75 (58%)
Query: 402 LFDYQKVGVQWLWE-LHCQRAGGIIGDEMGLGKTIQVLS-FLGALHFSNMYKPSIVVCPV 459
L YQ GV WL HCQ G I+GDEMGLGKT Q ++ F+ N P +++CP+
Sbjct: 48 LRSYQLEGVNWLARCFHCQN-GCILGDEMGLGKTCQTIALFIYLAGRLNDEGPFLILCPL 106
Query: 460 TLLRQWKREAEKWYP 474
++L W E E++ P
Sbjct: 107 SVLSNWTEEMERFAP 121
Score = 48 (22.0 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
Q++++KA MKDL + + N+ SQL + V+
Sbjct: 288 QKKYYKAILMKDLDAFESE-MAKKVKLQNVLSQLRKCVD 325
Score = 40 (19.1 bits), Expect = 9.6e-05, Sum P(2) = 9.6e-05
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 483 DSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKK-WDLLINRVLR-------S 534
D+ +++ +RK +K T+ EG H + L ++ P DL ++ +L+ S
Sbjct: 474 DTVEEIVYRKAASKLQLTNAIIEGGHFT-----LGAQKPAADADLQLSEILKFGLDKLLS 528
Query: 535 ESGLLITTYEQLRLLGE 551
G + + R+LGE
Sbjct: 529 SQGSTMDEIDLERILGE 545
Score = 38 (18.4 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 12/60 (20%), Positives = 23/60 (38%)
Query: 984 DNIGDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQ 1043
+ +GD V +I K A+ +H + + E L ++ V AL++
Sbjct: 230 EQVGDFVQRYQDIEKESDSASELHKLLQPFLLRRVKAEVATELPKKTEVVLYHGMSALQK 289
>UNIPROTKB|F2Z2R5 [details] [associations]
symbol:CHD5 "Chromodomain-helicase-DNA-binding protein 5"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:AL031847
GO:GO:0008026 InterPro:IPR023780 EMBL:AL035406 HGNC:HGNC:16816
ChiTaRS:CHD5 IPI:IPI00444866 ProteinModelPortal:F2Z2R5 SMR:F2Z2R5
Ensembl:ENST00000496404 ArrayExpress:F2Z2R5 Bgee:F2Z2R5
Uniprot:F2Z2R5
Length = 1225
Score = 606 (218.4 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 162/478 (33%), Positives = 258/478 (53%)
Query: 396 ESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYK-PSI 454
+S L YQ G+ WL Q I+ DEMGLGKT+Q + FL +L+ K P +
Sbjct: 694 DSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYL 753
Query: 455 VVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEG 514
V P++ + W+RE E W P F+V K ++S +N+ +E
Sbjct: 754 VSAPLSTIINWEREFEMWAPDFYVVTYTGD--------KESRSVIRENE------FSFED 799
Query: 515 NLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNA 574
N + R+ KK + + ++ + +L+T+YE + + L +EW V+DE HR++N +
Sbjct: 800 N-AIRSGKKV-FRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQS 857
Query: 575 EISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGY 634
+ V + +++++TG P+QN L EL+ L +F+ P + L F EFA I+
Sbjct: 858 KFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DISKED- 915
Query: 635 ANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRA 694
Q+ L DL+ P++LRR+KADV +P KTE ++ L++ Q+ Y+
Sbjct: 916 ------QIKK-------LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYK- 961
Query: 695 FLASSEVEQILD-GSRNSLYGIDVM---RKICNHPDL--LEREQSCQIPD--Y-GNP--E 743
F+ + E + G N + +++M +K CNHP L + ++ +P+ Y G+ +
Sbjct: 962 FILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVK 1021
Query: 744 RSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMA 803
S K+ ++ ++LK +D+GHRVL+F+Q +MLD+LE FL GY+Y R+DG R
Sbjct: 1022 SSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQE 1081
Query: 804 LIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQ 860
ID +N + F F+L+T+ GGLG NL A+ VII+D DWNP D+QA RA RIGQ
Sbjct: 1082 AIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQ 1139
Score = 52 (23.4 bits), Expect = 1.6e-55, Sum P(2) = 1.6e-55
Identities = 19/94 (20%), Positives = 43/94 (45%)
Query: 105 EQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDK 164
E + E+E ++A +D ++ + K KK K K +G + E+++
Sbjct: 22 EDEMSEEEDGGLEAF-DDFFPVEPVSLPKKKKPKKLKENKCKGKRKKKEGSNDELSENEE 80
Query: 165 FIQDLVKEE---HRPKRKSKEAQKPGKDRSKQQK 195
+++ + E + P +K K+ K K++ ++K
Sbjct: 81 DLEEKSESEGSDYSPNKKKKKKLKDKKEKKAKRK 114
Score = 43 (20.2 bits), Expect = 1.4e-54, Sum P(2) = 1.4e-54
Identities = 27/120 (22%), Positives = 47/120 (39%)
Query: 83 TVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHA---LTADRLKSLKK 139
T + L R+ +E + D+ E G E P + + L ++ K +K
Sbjct: 7 TEEELPRLFAEEMENEDEMSEEEDGGLEAFDDFFPVEPVSLPKKKKPKKLKENKCKGKRK 66
Query: 140 TKAQLVKELSHFPKGITSK----GIEHD------KFIQDLVKEEHRPKRKSKEAQKPGKD 189
K ELS + + K G ++ K ++D K+E + KRK K+ + D
Sbjct: 67 KKEGSNDELSENEEDLEEKSESEGSDYSPNKKKKKKLKD--KKEKKAKRKKKDEDEDDND 124
Score = 40 (19.1 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 171 KEEHRPK-RKSKEAQKPGKDRSKQQKTVSV 199
KE P RK + K GK + K +KT +
Sbjct: 245 KEGKGPGVRKKIKGSKDGKKKGKGKKTAGL 274
Score = 38 (18.4 bits), Expect = 4.7e-54, Sum P(2) = 4.7e-54
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 99 DDGDSTEQDGREDEK 113
DD D E+ G E+E+
Sbjct: 398 DDDDEEEEGGCEEEE 412
Score = 37 (18.1 bits), Expect = 6.0e-54, Sum P(2) = 6.0e-54
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 98 IDDGDSTEQDGRE 110
IDDGD E D ++
Sbjct: 332 IDDGDGYETDHQD 344
>UNIPROTKB|B4MX21 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7260 "Drosophila willistoni" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH963857 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 KO:K10875 OrthoDB:EOG4PC872 OMA:TYQALMG
RefSeq:XP_002065674.1 STRING:B4MX21 EnsemblMetazoa:FBtr0246224
GeneID:6642593 KEGG:dwi:Dwil_GK15573 FlyBase:FBgn0217578
InParanoid:B4MX21 Uniprot:B4MX21
Length = 784
Score = 349 (127.9 bits), Expect = 1.7e-55, Sum P(3) = 1.7e-55
Identities = 69/178 (38%), Positives = 109/178 (61%)
Query: 741 NPERSEKMKVVAQVLKVWK-DQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
NPE S K ++ +L + + +V+L + Q LD+ E Y + R+DG +K
Sbjct: 492 NPELSGKFMLLDFMLATIRANSDDKVVLISNYTQTLDLFEQLARKRKYTFVRLDGTMTIK 551
Query: 800 QRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
+R ++D +N+ +D F+F+L++K GG G NL GANR+ +FDPDWNP+ D QA R WR
Sbjct: 552 KRSKVVDRFNDPENDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRD 611
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLN 915
GQK+ +YRL+ G+IEEK+ RQ +K L++ I+ N + + F ++KDLF+ +
Sbjct: 612 GQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAEKHFTRDDLKDLFSFD 669
Score = 254 (94.5 bits), Expect = 1.7e-55, Sum P(3) = 1.7e-55
Identities = 68/221 (30%), Positives = 107/221 (48%)
Query: 528 INRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVH 587
+N R + +L+ +YE R+ L E G + DEGHR++N + L+T
Sbjct: 259 MNTSTRLGTPVLLISYETFRIYANILCQNEVGMVICDEGHRLKNSDNLTYQALMGLKTKR 318
Query: 588 RIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYR 647
R++++G PIQN L+E +SL +FV P LG F+ F PI G ++S + A
Sbjct: 319 RVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENPILKGQNTDSSDKERERALE 378
Query: 648 CAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL-D 706
L L+ ++RR + LP K E V+ LT Q Y FL S +V + L D
Sbjct: 379 KTQELIGLVNQCIIRRTNQILTKYLPVKFEMVICVRLTSVQLEFYTNFLKSDKVRRSLAD 438
Query: 707 ----GSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPE 743
S +L I ++K+C+HPDL+ + + + N +
Sbjct: 439 CNEKASLTALADITTLKKLCSHPDLIYEKMLARDKGFENSQ 479
Score = 106 (42.4 bits), Expect = 1.7e-55, Sum P(3) = 1.7e-55
Identities = 28/82 (34%), Positives = 48/82 (58%)
Query: 400 NNLFDYQKVGVQWLWELHCQRAGG----IIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSI 454
N L +Q+ GV+++++ + G I+ DEMGLGKT+Q ++ + L S KP+I
Sbjct: 151 NILRPHQREGVRFMYDCVEGKKGNFNGCIMADEMGLGKTLQCVTLVWTLLRQSCECKPTI 210
Query: 455 ----VVCPVTLLRQWKREAEKW 472
+V P +L++ W++E KW
Sbjct: 211 TKAIIVSPSSLVKNWEKEFTKW 232
>UNIPROTKB|B3MMA5 [details] [associations]
symbol:okr "DNA repair and recombination protein
RAD54-like" species:7217 "Drosophila ananassae" [GO:0000711
"meiotic DNA repair synthesis" evidence=ISS] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=ISS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0005634 "nucleus" evidence=ISS] [GO:0006338 "chromatin
remodeling" evidence=ISS] [GO:0010212 "response to ionizing
radiation" evidence=ISS] [GO:0043150 "DNA synthesis involved in
double-strand break repair via homologous recombination"
evidence=ISS] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR013967 Pfam:PF00176 Pfam:PF00271 Pfam:PF08658
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0051301 GO:GO:0007067 GO:GO:0003677 GO:GO:0010212
GO:GO:0006338 GO:GO:0004386 EMBL:CH902620 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0043150
GO:GO:0000711 RefSeq:XP_001962644.1 STRING:B3MMA5
EnsemblMetazoa:FBtr0119036 GeneID:6497163 KEGG:dan:Dana_GF14336
FlyBase:FBgn0091363 InParanoid:B3MMA5 KO:K10875 OrthoDB:EOG4PC872
Uniprot:B3MMA5
Length = 791
Score = 350 (128.3 bits), Expect = 2.8e-55, Sum P(3) = 2.8e-55
Identities = 70/177 (39%), Positives = 110/177 (62%)
Query: 742 PERSEKMKVVAQVLKVWKDQGH-RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQ 800
PE S K ++ +L + G+ +V+L + Q LD+ E Y + R+DG +K+
Sbjct: 498 PEWSGKFMLLDFMLAAIRAAGNDKVVLISNYTQTLDLFEQLARKRKYGFVRLDGTMSIKK 557
Query: 801 RMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIG 859
R ++D++N+ S+ F+F+L++K GG G NL GANR+ +FDPDWNP+ D QA R WR G
Sbjct: 558 RSKVVDKFNDPDSECFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPANDEQAMARVWRDG 617
Query: 860 QKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLN 915
QK+ +YRL+ GTIEEK+ RQ +K L++ I+ N + + F ++KDLF+ +
Sbjct: 618 QKKPCYIYRLVASGTIEEKILQRQTHKKSLSSTIIDNNESSEKHFTRDDLKDLFSFD 674
Score = 250 (93.1 bits), Expect = 2.8e-55, Sum P(3) = 2.8e-55
Identities = 67/211 (31%), Positives = 106/211 (50%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
+L+ +YE R+ E L E G + DEGHR++N + L+T R++++G PIQ
Sbjct: 274 VLLISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQ 333
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N L+E +SL +FV P LG F+ F I G A+++ + A L L+
Sbjct: 334 NDLTEYFSLVNFVNPEMLGTAADFKRNFENSILRGQNADSTEGERKKAIEKTQELIGLVD 393
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL-D----GSRNSL 712
++RR + LP K E V+ LT Q +Y FL S +V + L D S +L
Sbjct: 394 QCIIRRTNQILTKYLPIKFEMVICVKLTAIQLQLYTNFLNSDQVRRSLADCNEKASLTAL 453
Query: 713 YGIDVMRKICNHPDLLEREQSCQIPDYGNPE 743
I ++KIC+HPDL+ ++ + + N +
Sbjct: 454 ADITTLKKICSHPDLIHQKIEAKEKGFENSQ 484
Score = 107 (42.7 bits), Expect = 2.8e-55, Sum P(3) = 2.8e-55
Identities = 29/82 (35%), Positives = 49/82 (59%)
Query: 400 NNLFDYQKVGVQWLWE-LHCQRA---GGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSI 454
N L +Q+ GV++++E + ++ G I+ DEMGLGKT+Q ++ + L KP+I
Sbjct: 157 NILRPHQREGVRFMYECVEGKKGDFNGCIMADEMGLGKTLQCVTLVWTLLRQGPESKPTI 216
Query: 455 ----VVCPVTLLRQWKREAEKW 472
VV P +L++ W++E KW
Sbjct: 217 NKAIVVSPSSLVKNWEKEFTKW 238
>UNIPROTKB|E2QW28 [details] [associations]
symbol:HELLS "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 OMA:ETFYTAI
GeneTree:ENSGT00550000075106 EMBL:AAEX03015428
Ensembl:ENSCAFT00000012889 Uniprot:E2QW28
Length = 839
Score = 354 (129.7 bits), Expect = 3.3e-55, Sum P(4) = 3.3e-55
Identities = 75/185 (40%), Positives = 111/185 (60%)
Query: 717 VMRKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVWKDQGHRVLLFAQTQ 772
++RK CNHP L+E ++ E S K ++ ++L K +GH+VLLF+Q
Sbjct: 567 LLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKARGHKVLLFSQMT 626
Query: 773 QMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTG 832
+MLDIL + + + R+DG +R + +N DVFIF+++T+ GGLG NLT
Sbjct: 627 RMLDILMDYCHFRNFNFSRLDGSMSYSEREKNMHSFNTDPDVFIFLVSTRAGGLGINLTA 686
Query: 833 ANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNK 892
A+ VII+D DWNP +D+QA++R RIGQ + V VYRL+T TI++K+ R K L
Sbjct: 687 ADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKL 746
Query: 893 IL-KN 896
I+ KN
Sbjct: 747 IIHKN 751
Score = 229 (85.7 bits), Expect = 3.3e-55, Sum P(4) = 3.3e-55
Identities = 51/159 (32%), Positives = 84/159 (52%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
++IT++E L W Y ++DEGHRI+N + K+ +++++TG P+Q
Sbjct: 329 VVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQ 388
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N LSELWSL +F+ P L FE+ F IT + +L ++
Sbjct: 389 NNLSELWSLLNFLLPDVFDDLKSFESWF--DITSLSETAEDIIAKEREQNVLHMLHQILT 446
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFL 696
P+LLRR+K+DV ++P K E V++ L+++Q Y A +
Sbjct: 447 PFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIV 485
Score = 131 (51.2 bits), Expect = 3.3e-55, Sum P(4) = 3.3e-55
Identities = 30/93 (32%), Positives = 49/93 (52%)
Query: 405 YQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQ 464
YQ G++WL L GI+ DEMGLGKT+Q ++ + + + P +V P++ L
Sbjct: 227 YQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPN 286
Query: 465 WKREAEKWYPSFHVELLHDSAQDLGFRKKRAKS 497
W E +++ P L H + Q+ R+K K+
Sbjct: 287 WMAEFQRFTPDIPTMLYHGTQQE---RRKLVKN 316
Score = 41 (19.5 bits), Expect = 2.1e-27, Sum P(2) = 2.1e-27
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 125 LQHA----LTADRLKSLKKTKAQLVKELSHF 151
LQH L D +K K +L++EL F
Sbjct: 344 LQHCYWKYLIVDEGHRIKNMKCRLIRELKRF 374
Score = 40 (19.1 bits), Expect = 7.7e-22, Sum P(4) = 7.7e-22
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 791 RMDGLTPVKQRMALIDEYNNSSD 813
+M+ P+K++M + NS D
Sbjct: 810 QMNASGPIKEKMGIFKILENSED 832
Score = 38 (18.4 bits), Expect = 3.3e-55, Sum P(4) = 3.3e-55
Identities = 19/62 (30%), Positives = 29/62 (46%)
Query: 249 SNKQNVPDEQEARSNDPFSASVDRALRMMSEAAQARPSTKLL-DPESLPKLDGPTRPFQR 307
S+ N+ E ++ D S DR +S+ R +TK DP + K +G PFQ+
Sbjct: 164 SSSSNLCVEDLQKNKDSNSIIKDR----LSQTV--RQNTKFFFDP--VRKCNGQPVPFQQ 215
Query: 308 LK 309
K
Sbjct: 216 PK 217
>RGD|2323132 [details] [associations]
symbol:LOC100359912 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin a5-like" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031491 "nucleosome binding" evidence=IEA] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001005 InterPro:IPR001650
InterPro:IPR009057 InterPro:IPR015194 InterPro:IPR015195
Pfam:PF00176 Pfam:PF00271 Pfam:PF09110 Pfam:PF09111 PROSITE:PS51194
SMART:SM00490 SMART:SM00717 RGD:2323132 GO:GO:0005524 GO:GO:0003677
Gene3D:1.10.10.60 SUPFAM:SSF46689 InterPro:IPR017884
PROSITE:PS51293 GO:GO:0004386 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0016585 GO:GO:0031491 GO:GO:0043044
GeneTree:ENSGT00680000100002 SUPFAM:SSF101224 IPI:IPI00390811
Ensembl:ENSRNOT00000031851 Uniprot:F1M7H3
Length = 760
Score = 567 (204.7 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 136/366 (37%), Positives = 210/366 (57%)
Query: 540 ITTYEQLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
+T+YE L + EK + W Y V+DE HRI+N +++S + ++ +T +R+++TG P+Q
Sbjct: 5 VTSYEML--IKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLLLTGTPLQ 62
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N L ELWSL +F+ P F++ F +G R +VLR
Sbjct: 63 NNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLG--------DKKLVERLHMVLR---- 110
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD--GSRNSLYGI 715
P+LLRR+KADV LP K E ++ L++ QR Y L +++ IL+ G + + +
Sbjct: 111 PFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMK-DID-ILNSAGKMDKMRLL 168
Query: 716 DVM---RKICNHPDLLEREQSCQ--IPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQ 770
+++ RK CNHP L + + D S KM V+ ++L K+QG RVL+F+Q
Sbjct: 169 NILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQ 228
Query: 771 TQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTN 829
++LDILE + + YEY R+DG TP +R I+ YN +S F+F+L+T+ GGLG N
Sbjct: 229 MTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGIN 288
Query: 830 LTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFL 889
L A+ VI++D DWNP D+QA +RA RIGQ + V V+R IT T+EE++ R K L
Sbjct: 289 LATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVEERIVERAEMKLRL 348
Query: 890 TNKILK 895
+ +++
Sbjct: 349 DSIVIQ 354
Score = 40 (19.1 bits), Expect = 3.3e-55, Sum P(2) = 3.3e-55
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 966 KENNLEIGSSRRKGKEKVDNIGDEVDEET 994
++ N I ++ + G+ ++NI EV+ +T
Sbjct: 569 RDFNQFIKANEKWGRNDIENIAREVEGKT 597
>UNIPROTKB|F1NCD0 [details] [associations]
symbol:ERCC6L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00590000083118 EMBL:AADN02013166
IPI:IPI00572933 Ensembl:ENSGALT00000006172 OMA:DYKEFVW
Uniprot:F1NCD0
Length = 560
Score = 278 (102.9 bits), Expect = 4.5e-55, Sum P(4) = 4.5e-55
Identities = 53/118 (44%), Positives = 84/118 (71%)
Query: 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDG-LTPVKQR 801
+ S KM + +L +++GHR L+F+Q+++MLDI+E L + ++ R+DG +T + +R
Sbjct: 443 QESGKMLFLVGLLGRLREEGHRTLVFSQSRKMLDIIERVLSSRQFKIMRIDGTVTHLTER 502
Query: 802 MALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIG 859
I+ + ++ D +F+LTT+VGG+G LT ANRV+IFDP WNP+TD QA +RA+RIG
Sbjct: 503 EKRINAFQSNKDYSVFLLTTQVGGVGITLTAANRVVIFDPSWNPATDAQAVDRAYRIG 560
Score = 225 (84.3 bits), Expect = 4.5e-55, Sum P(4) = 4.5e-55
Identities = 49/152 (32%), Positives = 83/152 (54%)
Query: 532 LRSESGLLITTYEQLRLLGEKLL-----DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTV 586
++ ++G++IT+Y+ L ++L D W Y +LDE H+I+ P+ + + +
Sbjct: 175 IQRKNGIVITSYQMLINNWKQLASCHGQDFVWDYIILDEAHKIKCPSNKTTKCVYAIPAK 234
Query: 587 HRIIMTGAPIQNKLSELWSLFDFVFPGKL-GVLPVFEAEFAVPITVGGYANASPLQVSTA 645
HR+++TG P+QN L E+WSLFDF G L G F E+ PIT +A+ + +
Sbjct: 235 HRLLLTGTPLQNNLQEMWSLFDFACQGSLLGTAKTFRMEYENPITRAREKDATVGEKALG 294
Query: 646 YRCAVVLRDLIMPYLLRRMKADVNAQLPKKTE 677
+ + L +I PY LRR K D+ +K++
Sbjct: 295 LKISENLMTIIKPYFLRRTKDDIKKNHAEKSD 326
Score = 189 (71.6 bits), Expect = 4.5e-55, Sum P(4) = 4.5e-55
Identities = 38/104 (36%), Positives = 63/104 (60%)
Query: 385 FVTLEG-GLKIPESIFNNLFDYQKVGVQWLWELHCQ-RAGGIIGDEMGLGKTIQVLSFLG 442
FV + G GL + + LF +Q+ GV +L+ LH + R GGI+ D+MGLGKTIQ+++FL
Sbjct: 62 FVDVCGSGLLLYGEMHAKLFQHQREGVAFLYRLHREGRPGGILADDMGLGKTIQIIAFLS 121
Query: 443 ALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQ 486
+ S + + +++ P TL+ W E +W P V+ H +++
Sbjct: 122 GMFDSELIRHVLLIMPTTLVSSWLAEFARWTPGLRVKEFHGTSK 165
Score = 117 (46.2 bits), Expect = 7.0e-44, Sum P(4) = 7.0e-44
Identities = 29/94 (30%), Positives = 47/94 (50%)
Query: 654 DLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLY 713
D +P R A V L +K + V++ L Q +YR FL V+++L +R+ L
Sbjct: 326 DTPLPEDPREPSAPVMPSLTRKNDFVVWVYLAPVQEKIYRNFLCLDHVKEVLTTTRSPLA 385
Query: 714 GIDVMRKICNHPDLLEREQSCQIPDYGNPERSEK 747
+ V++K+C+HP LL Q+ D E E+
Sbjct: 386 ELTVLKKLCDHPRLLSARACTQL-DLDGQEYLEQ 418
Score = 50 (22.7 bits), Expect = 4.5e-55, Sum P(4) = 4.5e-55
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 267 SASVDRALRMMSEAAQARPSTKL 289
S +++AL++ EA RPS KL
Sbjct: 12 SGDLEQALQLFQEAVTIRPSEKL 34
>SGD|S000000277 [details] [associations]
symbol:RDH54 "DNA-dependent ATPase" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IGI;IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000727 "double-strand break repair via
break-induced replication" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA;IC] [GO:0030491 "heteroduplex formation" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IDA]
[GO:0045144 "meiotic sister chromatid segregation" evidence=IMP]
[GO:0015616 "DNA translocase activity" evidence=IDA] [GO:0032392
"DNA geometric change" evidence=IDA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016853 "isomerase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003916 "DNA
topoisomerase activity" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SGD:S000000277 GO:GO:0005524
GO:GO:0005634 EMBL:BK006936 GO:GO:0004386 EMBL:X76294
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0007131 GO:GO:0045144 InterPro:IPR018838 Pfam:PF10382
GO:GO:0000727 KO:K10877 GO:GO:0015616 GO:GO:0032392
HOGENOM:HOG000204521 GO:GO:0030491 OrthoDB:EOG4CVKG1 EMBL:Z35942
PIR:S45466 RefSeq:NP_009629.6 RefSeq:NP_009633.3
ProteinModelPortal:P38086 SMR:P38086 DIP:DIP-792N IntAct:P38086
MINT:MINT-566887 STRING:P38086 PaxDb:P38086 PeptideAtlas:P38086
EnsemblFungi:YBR073W GeneID:852365 GeneID:852369 KEGG:sce:YBR073W
KEGG:sce:YBR077C CYGD:YBR073w GeneTree:ENSGT00700000105778
OMA:AMSRIHR NextBio:971140 Genevestigator:P38086 GermOnline:YBR073W
GO:GO:0003916 Uniprot:P38086
Length = 958
Score = 565 (203.9 bits), Expect = 4.5e-55, Sum P(3) = 4.5e-55
Identities = 145/447 (32%), Positives = 239/447 (53%)
Query: 516 LSSRNPKKWD-LLINRVLRSESG--LLITTYEQLRLLGEKLLDVEW--GYAVLDEGHRIR 570
LSSRN D + + L+ + +LI YE+L + E+L + V DEGHR++
Sbjct: 419 LSSRNSPDMDKMAVRNFLKVQRTYQVLIIGYEKLLSVSEELEKNKHLIDMLVCDEGHRLK 478
Query: 571 NPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIT 630
N ++I K L ++++TG PIQN L+E +++ DF+ PG LG F+ F +PIT
Sbjct: 479 NGASKILNTLKSLDIRRKLLLTGTPIQNDLNEFFTIIDFINPGILGSFASFKRRFIIPIT 538
Query: 631 -VGGYANA--SPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEE 687
AN L R ++ ++ ++LRR A + LP KT+ +LFC +
Sbjct: 539 RARDTANRYNEELLEKGEERSKEMI-EITKRFILRRTNAILEKYLPPKTDIILFCKPYSQ 597
Query: 688 QRAVYRAFLASSEVE--QILDGSRNSLYGIDVMRKICNHPDLLERE-------QSCQIPD 738
Q ++ L + ++ Q+ S SL I +++K+CN P L+ + + Q D
Sbjct: 598 QILAFKDILQGARLDFGQLTFSS--SLGLITLLKKVCNSPGLVGSDPYYKSHIKDTQSQD 655
Query: 739 -YGNPERSEKMKVVAQVLK-VWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLT 796
Y S K+KV+ +L+ + K +V++ + Q LDI+E+ + +G + R+DG
Sbjct: 656 SYSRSLNSGKLKVLMTLLEGIRKGTKEKVVVVSNYTQTLDIIENLMNMAGMSHCRLDGSI 715
Query: 797 PVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAW 856
P KQR +++ +N + +F F+L+ K GG+G NL GA+R+I+FD DWNPS D+QA R
Sbjct: 716 PAKQRDSIVTSFNRNPAIFGFLLSAKSGGVGLNLVGASRLILFDNDWNPSVDLQAMSRIH 775
Query: 857 RIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRR-------FFKARNMK 909
R GQK+ +YRL+T G I+EK+ RQ+ K+ L+ K L + + R F ++K
Sbjct: 776 RDGQKKPCFIYRLVTTGCIDEKILQRQLMKNSLSQKFLGDSEMRNKESSNDDLFNKEDLK 835
Query: 910 DLFTLNDDGNGGSTETSNIFSQLSEDV 936
DLF+++ D + + L E++
Sbjct: 836 DLFSVHTDTKSNTHDLICSCDGLGEEI 862
Score = 80 (33.2 bits), Expect = 4.5e-55, Sum P(3) = 4.5e-55
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 447 SNMYKPSIVVCPVTLLRQWKREAEKW 472
+ + K +VVCPVTL+ WKRE KW
Sbjct: 383 TGLCKKILVVCPVTLIGNWKREFGKW 408
Score = 47 (21.6 bits), Expect = 4.5e-55, Sum P(3) = 4.5e-55
Identities = 19/89 (21%), Positives = 38/89 (42%)
Query: 1129 GAGLERQFEVASSSANVARFADTRTSRSSKNASDVQPEILIRQICTFMQQRGGSSNSACI 1188
G G E ++ + N R++ + +A D+Q ++ + T + C+
Sbjct: 857 GLGEEIEYPETNQQQNTVELRK-RSTTTWTSALDLQKKM--NEAATNDDAKKSQYIRQCL 913
Query: 1189 VEHFKDRVPSKDLPLFKNLLKEIATLQKD 1217
V H+K P++ LF ++ + T KD
Sbjct: 914 V-HYKHIDPARQDELFDEVITDSFTELKD 941
>WB|WBGene00004298 [details] [associations]
symbol:rad-54 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0033554 "cellular
response to stress" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0033554 GO:GO:0003677 GO:GO:0004386
EMBL:AL034364 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00550000074619 KO:K10875 OMA:TYQALMG EMBL:AL110471
PIR:T26238 RefSeq:NP_492438.1 ProteinModelPortal:G5EEN6 SMR:G5EEN6
IntAct:G5EEN6 EnsemblMetazoa:W06D4.6 GeneID:172728
KEGG:cel:CELE_W06D4.6 CTD:172728 WormBase:W06D4.6 NextBio:876761
Uniprot:G5EEN6
Length = 818
Score = 344 (126.2 bits), Expect = 6.5e-55, Sum P(3) = 6.5e-55
Identities = 70/181 (38%), Positives = 110/181 (60%)
Query: 737 PDYGNPERSEKMKVVAQVLKVW-KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGL 795
P +P S KMKV+ +L V K + +L + Q +D GY++ R+DG
Sbjct: 538 PKSFDPSFSGKMKVLDYILAVTRKTTDDKFVLVSNYTQTIDQFMELCKLRGYDFVRLDGS 597
Query: 796 TPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARER 854
+KQR ++D +N+ +S +F F+L++K GG G NL GANR+++FDPDWNP+ D QA R
Sbjct: 598 MSIKQRSKIVDTFNDPASTIFCFLLSSKAGGCGLNLIGANRLVMFDPDWNPANDDQAMAR 657
Query: 855 AWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFT 913
WR GQK+ +YRL+ G+IEEK++ RQ +K L++ ++ + R F + +++LF
Sbjct: 658 VWRDGQKKMCFIYRLLATGSIEEKMFQRQTHKKALSSCVVDAGEDVARHFSSEQLRELFK 717
Query: 914 L 914
L
Sbjct: 718 L 718
Score = 239 (89.2 bits), Expect = 6.5e-55, Sum P(3) = 6.5e-55
Identities = 64/211 (30%), Positives = 101/211 (47%)
Query: 532 LRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIM 591
+R +LI +YE RL L + G + DEGHR++N L+ R+++
Sbjct: 313 MRCAIPVLIISYETFRLYANILHSGDVGIVICDEGHRLKNSENLTYQALSGLKCARRVLI 372
Query: 592 TGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVV 651
+G PIQN L E +SL +FV PG LG F +F I G A+AS
Sbjct: 373 SGTPIQNDLLEYFSLVNFVNPGLLGTASEFRKKFENAILKGRDADASSEDQKKGEEKTKE 432
Query: 652 LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSR-- 709
+ L+ ++RR A + LP K EH++ C + Q +Y + + +I++ +
Sbjct: 433 MISLVEKCIIRRTSALLTKYLPVKYEHIICCKNSTLQETLYNKLIECEKQNRIVEKDKGA 492
Query: 710 --NSLYGIDVMRKICNHPDLLEREQSCQIPD 738
++L I ++K+CNHP L+ E Q PD
Sbjct: 493 TASALSFITHLKKLCNHPYLVYDE--FQKPD 521
Score = 122 (48.0 bits), Expect = 6.5e-55, Sum P(3) = 6.5e-55
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 405 YQKVGVQWLWE----LHCQRAGG-IIGDEMGLGKTIQVLSFLGALHFSN-----MYKPSI 454
+Q+ GV+++W+ ++ G I+ DEMGLGKT+Q +S L L + SI
Sbjct: 205 HQRDGVKFMWDCVTGINIPEFHGCIMADEMGLGKTLQCISLLWTLLRQSPDACPTVSKSI 264
Query: 455 VVCPVTLLRQWKREAEKW 472
+VCP +L++ W +E +KW
Sbjct: 265 IVCPSSLVKNWDKEIKKW 282
Score = 55 (24.4 bits), Expect = 8.0e-28, Sum P(2) = 8.0e-28
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 59 SSTSQEKLYNKL-------RAVEFEIGAVAST---VDHLRRV 90
+ST QE LYNKL R VE + GA AS + HL+++
Sbjct: 465 NSTLQETLYNKLIECEKQNRIVEKDKGATASALSFITHLKKL 506
>RGD|1306794 [details] [associations]
symbol:Chd1 "chromodomain helicase DNA binding protein 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006338 "chromatin remodeling" evidence=ISO]
[GO:0035064 "methylated histone residue binding" evidence=ISO]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50013 PROSITE:PS51194
SMART:SM00298 SMART:SM00490 Pfam:PF00385 RGD:1306794 GO:GO:0005524
GO:GO:0005634 GO:GO:0003677 GO:GO:0006338 GO:GO:0004386
InterPro:IPR016197 SUPFAM:SSF54160 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 InterPro:IPR023780 InterPro:IPR023779
PROSITE:PS00598 GeneTree:ENSGT00560000076896 OrthoDB:EOG4PG601
IPI:IPI00767719 Ensembl:ENSRNOT00000019358 UCSC:RGD:1306794
Uniprot:D4AAG9
Length = 904
Score = 476 (172.6 bits), Expect = 6.6e-55, Sum P(4) = 6.6e-55
Identities = 126/368 (34%), Positives = 203/368 (55%)
Query: 512 YEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHR 568
Y G+++SRN + + + + R + +L+TTYE L L +K L + W + +DE HR
Sbjct: 559 YLGDINSRNMIRTHEWMHPQTKRLKFNILLTTYEIL--LKDKAFLGGLNWAFIGVDEAHR 616
Query: 569 IRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP 628
++N ++ + ++ HR+++TG P+QN L ELWSL F+ P K FE E
Sbjct: 617 LKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFSSWEDFEEEHGKG 676
Query: 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQ 688
G YA+ L + P+LLRR+K DV LP K E +L ++ Q
Sbjct: 677 REYG-YAS---------------LHKELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQ 720
Query: 689 RAVYRAFLASSEVEQILDGSRNSLYG-IDVM---RKICNHPDLLEREQSCQIPDYGNPE- 743
+ Y+ ++ + + + GS+ S G +++M +K CNH L++ + + Y E
Sbjct: 721 KQYYK-WILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDNNEF--YNKQEA 777
Query: 744 -----RSE-KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTP 797
RS K+ ++ ++L +++G+RVL+F+Q +MLDIL +L + ++R+DG
Sbjct: 778 LQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIG 837
Query: 798 VKQRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAW 856
+R AL D +N S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA
Sbjct: 838 ELRRQAL-DHFNAXGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAH 896
Query: 857 RIGQKQDV 864
RIGQK+ V
Sbjct: 897 RIGQKKQV 904
Score = 165 (63.1 bits), Expect = 6.6e-55, Sum P(4) = 6.6e-55
Identities = 40/95 (42%), Positives = 53/95 (55%)
Query: 383 PPFVTLEGGLKIPESIFNN----LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVL 438
P FV L+ K P I + L DYQ G+ WL C+ I+ DEMGLGKTIQ +
Sbjct: 459 PRFVALK---KQPSYIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTI 515
Query: 439 SFLGAL-HFSNMYKPSIVVCPVTLLRQWKREAEKW 472
SFL L H +Y P ++V P++ L W+RE + W
Sbjct: 516 SFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTW 550
Score = 52 (23.4 bits), Expect = 6.6e-55, Sum P(4) = 6.6e-55
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 161 EHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTV 197
E DK D + ++ PK K K + + +SK K +
Sbjct: 168 ERDKSSCDGTESDYEPKNKVKSRKPQNRSKSKSGKKI 204
Score = 46 (21.3 bits), Expect = 6.6e-55, Sum P(4) = 6.6e-55
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 91 STKEDNDIDDGDSTEQDGREDEKSAVQASP 120
S+ D+ D G +E + ++ VQA P
Sbjct: 49 SSDSDSGSDSGSQSESESDTSRENKVQAKP 78
Score = 46 (21.3 bits), Expect = 3.0e-41, Sum P(2) = 3.0e-41
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 484 SAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWD 525
SA G SSD + GS DSD + S++ + D
Sbjct: 26 SASGSGSGSSSGSSSDGSSSQSGSSDSDSGSDSGSQSESESD 67
Score = 44 (20.5 bits), Expect = 1.3e-53, Sum P(3) = 1.3e-53
Identities = 23/90 (25%), Positives = 40/90 (44%)
Query: 81 ASTVDHLRRVSTKEDNDIDDGDSTEQDGR----EDE--KSAVQASPNDMTLQHALTADRL 134
AS+ D R+ ED + S Q G EDE KS+ + +D ++ + + +
Sbjct: 133 ASSSDVKRKKHNDEDWQMSGSGSPSQSGSDSESEDERDKSSCDGTESDYEPKNKVKSRKP 192
Query: 135 KSLKKTKAQLVKELSHFPKGITSKGIEHDK 164
++ K+K+ K L + I S E D+
Sbjct: 193 QNRSKSKSGK-KILGQKKRQIDSSEDEDDE 221
Score = 42 (19.8 bits), Expect = 7.2e-54, Sum P(4) = 7.2e-54
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 244 QQPGPSNKQNVPDEQEARSNDPFSASVDR 272
Q+P SN + D + +D S+ V R
Sbjct: 112 QRPASSNSGSEEDSSSSEDSDASSSDVKR 140
Score = 42 (19.8 bits), Expect = 2.1e-53, Sum P(3) = 2.1e-53
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 88 RRVSTKEDNDIDDGDSTEQDGR 109
R++ + ED D +D D+ ++ R
Sbjct: 210 RQIDSSEDEDDEDYDNDKRSSR 231
Score = 40 (19.1 bits), Expect = 8.8e-41, Sum P(3) = 8.8e-41
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 480 LLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSR---NPKKWDL 526
+L Q ++ + +S ++ D S DSD + R N + W +
Sbjct: 101 MLRKQTQQPQQQRPASSNSGSEEDSSSSEDSDASSSDVKRKKHNDEDWQM 150
Score = 40 (19.1 bits), Expect = 1.3e-40, Sum P(2) = 1.3e-40
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 497 SSDTDNDGEGSHDSDYEGNLSSRN 520
SSD+D+ + S+ E + S N
Sbjct: 49 SSDSDSGSDSGSQSESESDTSREN 72
Score = 39 (18.8 bits), Expect = 4.3e-53, Sum P(3) = 4.3e-53
Identities = 12/57 (21%), Positives = 23/57 (40%)
Query: 51 DKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQD 107
D S S D ++S + K ++++ S ++++ D D TE D
Sbjct: 124 DSSSSEDSDASSSDVKRKKHNDEDWQMSGSGSPSQSGSDSESEDERDKSSCDGTESD 180
Score = 39 (18.8 bits), Expect = 1.6e-40, Sum P(2) = 1.6e-40
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 498 SDTDNDGEGSHDSDYEGNLSSRNPK 522
SD+ + E D+ E + ++ PK
Sbjct: 56 SDSGSQSESESDTSRENKVQAKPPK 80
Score = 37 (18.1 bits), Expect = 1.8e-07, Sum P(4) = 1.8e-07
Identities = 9/21 (42%), Positives = 15/21 (71%)
Query: 1106 SAGKVLSSSELLARIR--GNQ 1124
S+GK++ +LL R+R GN+
Sbjct: 784 SSGKLILLDKLLIRLRERGNR 804
>MGI|MGI:106209 [details] [associations]
symbol:Hells "helicase, lymphoid specific" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000775 "chromosome, centromeric region" evidence=IDA]
[GO:0001655 "urogenital system development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005721 "centromeric heterochromatin"
evidence=IDA] [GO:0006306 "DNA methylation" evidence=IMP]
[GO:0006342 "chromatin silencing" evidence=IMP] [GO:0006346
"methylation-dependent chromatin silencing" evidence=IMP]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007067
"mitosis" evidence=IEA] [GO:0007275 "multicellular organismal
development" evidence=IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030098 "lymphocyte differentiation"
evidence=TAS] [GO:0031508 "centromeric heterochromatin assembly"
evidence=IMP] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0051301 "cell division" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106209 GO:GO:0005524
GO:GO:0005634 GO:GO:0043066 GO:GO:0051301 GO:GO:0007067
GO:GO:0003677 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 HOGENOM:HOG000172362 OMA:ETFYTAI GO:GO:0006346
GO:GO:0030098 GO:GO:0046651 CTD:3070 HOVERGEN:HBG060049
OrthoDB:EOG4SN1N4 EMBL:U25691 EMBL:AF155210 EMBL:AK013266
EMBL:AK147126 EMBL:BC020056 EMBL:BC100394 IPI:IPI00121431
IPI:IPI00808497 PIR:JC4666 RefSeq:NP_032260.2 UniGene:Mm.392920
UniGene:Mm.486446 UniGene:Mm.57223 ProteinModelPortal:Q60848
SMR:Q60848 DIP:DIP-43735N IntAct:Q60848 MINT:MINT-2521001
STRING:Q60848 PhosphoSite:Q60848 PaxDb:Q60848 PRIDE:Q60848
DNASU:15201 Ensembl:ENSMUST00000025965 GeneID:15201 KEGG:mmu:15201
UCSC:uc008hjt.1 GeneTree:ENSGT00550000075106 InParanoid:Q60848
NextBio:287739 Bgee:Q60848 CleanEx:MM_HELLS Genevestigator:Q60848
GermOnline:ENSMUSG00000025001 Uniprot:Q60848
Length = 821
Score = 348 (127.6 bits), Expect = 1.0e-54, Sum P(3) = 1.0e-54
Identities = 78/214 (36%), Positives = 119/214 (55%)
Query: 717 VMRKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVWKDQGHRVLLFAQTQ 772
++RK CNHP ++E ++ E S K ++ ++L K +GH+VL+F+Q
Sbjct: 549 LLRKCCNHPYMIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLVFSQMT 608
Query: 773 QMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTG 832
MLDIL + + + R+DG +R I +N DVF+F+++T+ GGLG NLT
Sbjct: 609 SMLDILMDYCHLRNFIFSRLDGSMSYSEREKNIYSFNTDPDVFLFLVSTRAGGLGINLTA 668
Query: 833 ANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNK 892
A+ VII+D DWNP +D+QA++R RIGQ + V VYRL+T TI++K+ R K L
Sbjct: 669 ADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKL 728
Query: 893 IL-KN---------PQQRRFFKARNMKDLFTLND 916
I+ KN Q + F A+ + +L D
Sbjct: 729 IIHKNHFKGGQSGLSQSKNFLDAKELMELLKSRD 762
Score = 225 (84.3 bits), Expect = 1.0e-54, Sum P(3) = 1.0e-54
Identities = 50/159 (31%), Positives = 82/159 (51%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
+++T++E L W Y ++DEGHRI+N + K+ +++++TG P+Q
Sbjct: 311 VVVTSFEIAMRDQNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQ 370
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N LSELWSL +F+ P L FE+ F IT + +L ++
Sbjct: 371 NNLSELWSLLNFLLPDVFDDLKSFESWF--DITSLSETAEDIIAKEREQNVLHMLHQILT 428
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFL 696
P+LLRR+K+DV ++P K E V++ L +Q Y A +
Sbjct: 429 PFLLRRLKSDVALEVPPKREVVVYAPLCNKQEIFYTAIV 467
Score = 130 (50.8 bits), Expect = 1.0e-54, Sum P(3) = 1.0e-54
Identities = 30/93 (32%), Positives = 49/93 (52%)
Query: 405 YQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQ 464
YQ G++WL L GI+ DEMGLGKT+Q ++ + + + P +V P++ L
Sbjct: 209 YQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPN 268
Query: 465 WKREAEKWYPSFHVELLHDSAQDLGFRKKRAKS 497
W E +++ P L H + +D R+K K+
Sbjct: 269 WMAEFKRFTPEIPTLLYHGTRED---RRKLVKN 298
Score = 41 (19.5 bits), Expect = 8.7e-27, Sum P(2) = 8.7e-27
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 125 LQHA----LTADRLKSLKKTKAQLVKELSHF 151
LQH L D +K K +L++EL F
Sbjct: 326 LQHCYWKYLIVDEGHRIKNMKCRLIRELKRF 356
Score = 37 (18.1 bits), Expect = 1.3e-21, Sum P(3) = 1.3e-21
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 696 LASSEVEQILDGSRNSLYGIDVMRKICNHPDLLER 730
L S + E+ + GSR + + + + + DL+++
Sbjct: 758 LKSRDYEREVKGSREKVISDEDLELLLDRSDLIDQ 792
>UNIPROTKB|J9NRN3 [details] [associations]
symbol:CHD5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012958 InterPro:IPR019787 Pfam:PF00176 Pfam:PF00271
Pfam:PF00628 Pfam:PF08073 PROSITE:PS00690 PROSITE:PS50013
PROSITE:PS50016 PROSITE:PS51194 SMART:SM00184 SMART:SM00249
SMART:SM00298 SMART:SM00490 Pfam:PF00385 GO:GO:0005524
GO:GO:0005634 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 InterPro:IPR019786
PROSITE:PS01359 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR023780 GeneTree:ENSGT00560000076896 EMBL:AAEX03003895
EMBL:AAEX03003896 EMBL:AAEX03003897 Ensembl:ENSCAFT00000044104
Uniprot:J9NRN3
Length = 1195
Score = 607 (218.7 bits), Expect = 1.5e-54, Sum P(2) = 1.5e-54
Identities = 162/480 (33%), Positives = 259/480 (53%)
Query: 396 ESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYK-PSI 454
+S L YQ G+ WL Q I+ DEMGLGKT+Q + FL +L+ K P +
Sbjct: 668 DSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYL 727
Query: 455 VVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEG 514
V P++ + W+RE E W P F+V K ++S +N+ +E
Sbjct: 728 VSAPLSTIINWEREFEMWAPDFYVVTYTGD--------KESRSVIRENE------FSFED 773
Query: 515 NLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNA 574
N + R+ KK + + ++ + +L+T+YE + + L +EW V+DE HR++N +
Sbjct: 774 N-AIRSGKKV-FRMKKEVQIKFHVLLTSYELITIDQAILGSIEWACLVVDEAHRLKNNQS 831
Query: 575 EISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGY 634
+ V + +++++TG P+QN L EL+ L +F+ P + L F EFA I+
Sbjct: 832 KFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTPERFNNLEGFLEEFA-DISKED- 889
Query: 635 ANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRA 694
Q+ L DL+ P++LRR+KADV +P KTE ++ L++ Q+ Y+
Sbjct: 890 ------QIKK-------LHDLLGPHMLRRLKADVFKNMPAKTELIVRVELSQMQKKYYK- 935
Query: 695 FLASSEVEQILD-GSRNSLYGIDVM---RKICNHPDL--LEREQSCQIPD--Y-GNP--E 743
F+ + E + G N + +++M +K CNHP L + ++ +P+ Y G+ +
Sbjct: 936 FILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYDGSSLVK 995
Query: 744 RSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMA 803
S K+ ++ ++LK +D+GHRVL+F+Q +MLD+LE FL GY+Y R+DG R
Sbjct: 996 SSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQE 1055
Query: 804 LIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQ 862
ID +N + F F+L+T+ GGLG NL A+ VII+D DWNP D+QA RA RIGQ +
Sbjct: 1056 AIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNK 1115
Score = 41 (19.5 bits), Expect = 1.5e-54, Sum P(2) = 1.5e-54
Identities = 14/64 (21%), Positives = 29/64 (45%)
Query: 135 KSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQDLVKEE---HRPKRKSKEAQKPGKDRS 191
K KK K K +G + E++ +++ + E + P +K K+ K K++
Sbjct: 25 KKSKKLKENRSKGKRKKKEGSNDELSENEDDLEEKSESEGSDYSPNKKKKKKLKDKKEKK 84
Query: 192 KQQK 195
++K
Sbjct: 85 AKRK 88
Score = 39 (18.8 bits), Expect = 2.4e-54, Sum P(2) = 2.4e-54
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 101 GDSTEQDGREDEKSAVQASPNDMTLQ-HALTADRLKSLKKTKAQLVKE 147
G S+E+D RE E AS + +++ TA KS ++ K + + +
Sbjct: 262 GSSSEEDERE-ESDLDSASIHSSSVRSEGSTALGKKSKRRRKKKRIDD 308
Score = 38 (18.4 bits), Expect = 3.1e-54, Sum P(2) = 3.1e-54
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 99 DDGDSTEQDGREDEK 113
DD D E+ G E+E+
Sbjct: 372 DDDDEEEEGGCEEEE 386
Score = 37 (18.1 bits), Expect = 4.0e-54, Sum P(2) = 4.0e-54
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 98 IDDGDSTEQDGRE 110
IDDGD E D ++
Sbjct: 306 IDDGDGYETDHQD 318
Score = 37 (18.1 bits), Expect = 4.0e-54, Sum P(2) = 4.0e-54
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 175 RPKRK-SKEAQKPGKDR 190
R K K SK+A+K GK R
Sbjct: 227 RKKIKGSKDAKKKGKGR 243
Score = 37 (18.1 bits), Expect = 4.0e-54, Sum P(2) = 4.0e-54
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 176 PKRKSKEAQKPGKDRSKQQK 195
PK+K + K + + K++K
Sbjct: 22 PKKKKSKKLKENRSKGKRKK 41
>UNIPROTKB|E1BS48 [details] [associations]
symbol:CHD9 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000330 InterPro:IPR000953 InterPro:IPR001650
InterPro:IPR006576 Pfam:PF00176 Pfam:PF00271 Pfam:PF07533
PROSITE:PS50013 PROSITE:PS51194 SMART:SM00298 SMART:SM00490
SMART:SM00592 Pfam:PF00385 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0004386 InterPro:IPR016197 SUPFAM:SSF54160
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 InterPro:IPR023780
GeneTree:ENSGT00560000077077 OMA:MWGHQTA EMBL:AADN02038292
EMBL:AADN02038293 EMBL:AADN02038294 EMBL:AADN02038295
EMBL:AADN02038296 EMBL:AADN02038297 EMBL:AADN02038298
IPI:IPI00579055 Ensembl:ENSGALT00000005902 Uniprot:E1BS48
Length = 2614
Score = 498 (180.4 bits), Expect = 3.6e-54, Sum P(4) = 3.6e-54
Identities = 138/417 (33%), Positives = 216/417 (51%)
Query: 512 YEGNLSSRNP-KKWDLLIN----RVLRSESGL--LITTYEQLRLLG-EKLLDVEWGYAVL 563
Y G++ SR +++++ R++R +ITT+E + L G +L +EW ++
Sbjct: 935 YHGSMISRQMIQQYEMYFRDSQGRIVRGTYRFQAIITTFEMI-LGGCPELNAIEWRCVII 993
Query: 564 DEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEA 623
DE HR++N N ++ K + H++++TG P+QN + EL+SL F+ P + F
Sbjct: 994 DEAHRLKNRNCKLLEGLKLMNLEHKVLLTGTPLQNTVEELFSLLHFLEPLRFPAESTFMQ 1053
Query: 624 EFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCS 683
EF G +Q L+ ++ P +LRR+K DV +L K E ++
Sbjct: 1054 EF------GDLKTEEQVQK---------LQAILKPMMLRRLKEDVEKKLAPKEETIIEVE 1098
Query: 684 LTEEQRAVYRAFLASSEVEQILD-GSRNSLYGIDVM---RKICNHPDLLEREQSCQIPDY 739
LT Q+ YRA L + G N ++ M RK CNHP L++ + + ++
Sbjct: 1099 LTNIQKKYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRKCCNHPYLIKGAEEKILGEF 1158
Query: 740 G---NP-----------ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS 785
NP + + K+ ++ ++L K GH+VL+F+Q + LDILE +LI
Sbjct: 1159 KETYNPTAPDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIHK 1218
Query: 786 GYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWN 844
Y Y R+DG R A ID ++ SD F+F+L T+ GGLG NLT A+ IIFD DWN
Sbjct: 1219 RYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWN 1278
Query: 845 PSTDVQ-ARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQR 900
P D+Q A+ R RIGQ + V VYRLITR + E +++ R K L +L++ R
Sbjct: 1279 PQNDLQKAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASLKLGLDKAVLQSMSGR 1335
Score = 148 (57.2 bits), Expect = 3.6e-54, Sum P(4) = 3.6e-54
Identities = 31/85 (36%), Positives = 47/85 (55%)
Query: 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV 459
N L +YQ G+ WL R I+ DEMGLGKTIQ ++FL + S + P +++ P+
Sbjct: 855 NQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEILLSGIRGPFLIIAPL 914
Query: 460 TLLRQWKREAEKWYPSFHVELLHDS 484
+ + W+RE W +V + H S
Sbjct: 915 STITNWEREFRTW-TDLNVVVYHGS 938
Score = 63 (27.2 bits), Expect = 3.6e-54, Sum P(4) = 3.6e-54
Identities = 32/154 (20%), Positives = 68/154 (44%)
Query: 50 HDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDI------DDGDS 103
H KS++ + S++K K + + A + + + + + +I ++ S
Sbjct: 492 HTKSQNTQVRAMSEKKQRKKADSESKQEKANRIISEAIAKAKERGERNIPRVMSPENFPS 551
Query: 104 TEQDGREDEKSA-VQASPNDMTLQHALTADRLKSLKKTK-AQLVKELSHFPKGITSKGIE 161
+G+E++K V++ P D + T K+ +KTK +L+ L K K
Sbjct: 552 VSAEGKEEKKGRKVKSKPKDKESKKPKTGSSSKTKEKTKIGKLIITLGKKQK---RKNES 608
Query: 162 HDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQK 195
D+ + D K+ + K +++QK +R ++K
Sbjct: 609 SDE-LSD-AKQTPQKSLKDEDSQKRRSNRQVKRK 640
Score = 62 (26.9 bits), Expect = 7.7e-53, Sum P(5) = 7.7e-53
Identities = 24/96 (25%), Positives = 43/96 (44%)
Query: 48 KPHDKSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQD 107
KP DK ES P + S K K + IG + T+ ++ + +++ D T Q
Sbjct: 568 KPKDK-ESKKPKTGSSSKTKEKTK-----IGKLIITLGKKQKRKNESSDELSDAKQTPQK 621
Query: 108 GREDEKSAVQASPNDMTLQ-HALTADRLKSLKKTKA 142
+DE S + S + + +A + +S ++ KA
Sbjct: 622 SLKDEDSQKRRSNRQVKRKKYAEEGEGKQSEEEAKA 657
Score = 56 (24.8 bits), Expect = 1.7e-06, Sum P(4) = 1.7e-06
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 711 SLYGIDVMRKI----CNHPDLLEREQSCQI-PD 738
+LY I+++RK+ HP L ER + CQ PD
Sbjct: 1922 TLYRIELLRKVREQALRHPQLFERLKLCQPNPD 1954
Score = 55 (24.4 bits), Expect = 3.6e-54, Sum P(4) = 3.6e-54
Identities = 25/151 (16%), Positives = 66/151 (43%)
Query: 1013 DAIMNAHDEEKMRLE--EQASQVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSS 1070
DA +N ++ K++ E ++ +Q ++ + + +++ + + +S T PS
Sbjct: 2034 DAKVNTPEDTKVKSENRKEDAQSSEEESMSTEETQTVMKSEPLSPKNGAPVQNTEHKPS- 2092
Query: 1071 VRKKFGSTVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGA 1130
V+ + + + +PL + ++K + G+ +S+ S R + ++ +
Sbjct: 2093 VKIEADRRMVAARTEPLTPNPASKKQRVSKRGSDSSSDSDSDSDRSSCSSRSSSSSSSSS 2152
Query: 1131 GLERQFEVASSSANVARFADTRTSRSSKNAS 1161
SSS++ + + +S SS ++S
Sbjct: 2153 SSCSHSRSGSSSSSSSSCSSASSSSSSSSSS 2183
Score = 50 (22.7 bits), Expect = 1.2e-53, Sum P(4) = 1.2e-53
Identities = 32/159 (20%), Positives = 61/159 (38%)
Query: 961 DAVGDKENNLEIGSSRRKGKEKVDNIGDEVDEETNILKSLFDANGIHSAMNHDAIMNAHD 1020
DA + + ++ S RK E + +E T +++ + + S N + N
Sbjct: 2034 DAKVNTPEDTKVKSENRK--EDAQS-SEEESMSTEETQTVMKSEPL-SPKNGAPVQNTEH 2089
Query: 1021 EEKMRLEEQASQVAQRAAE-----ALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKF 1075
+ +++E VA R A ++ R+ + D S + + SS
Sbjct: 2090 KPSVKIEADRRMVAARTEPLTPNPASKKQRVSKRGSDSSSDS--DSDSDRSSCSSRSSSS 2147
Query: 1076 GSTVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSS 1114
S+ S GSSS+ + +S + +S+ SSS
Sbjct: 2148 SSSSSSSCSHSRSGSSSSSSSSCSSASSSSSSSSSSSSS 2186
Score = 50 (22.7 bits), Expect = 1.3e-51, Sum P(5) = 1.3e-51
Identities = 31/138 (22%), Positives = 57/138 (41%)
Query: 59 SSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQA 118
SS S + L ++ R V F+ +S TK N S ++ ++ + + Q
Sbjct: 461 SSVSSQHLQDRSR-VTFQGQPPSSKKTDGSGSHTKSQNTQVRAMSEKKQRKKADSESKQE 519
Query: 119 SPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFIQDLVKEEHRPKR 178
N + + A+ + K + V +FP ++++G E K + VK +PK
Sbjct: 520 KANRI-ISEAIA--KAKERGERNIPRVMSPENFPS-VSAEGKEEKKGRK--VKS--KPKD 571
Query: 179 KSKEAQKPGKDRSKQQKT 196
K + K G ++KT
Sbjct: 572 KESKKPKTGSSSKTKEKT 589
Score = 50 (22.7 bits), Expect = 1.6e-40, Sum P(5) = 1.6e-40
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 464 QWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKK 523
Q + + W+ S + L D ++ + F+ + S TD G GSH + + + KK
Sbjct: 451 QSQTQIHPWHSSVSSQHLQDRSR-VTFQGQPPSSKKTD--GSGSHTKSQNTQVRAMSEKK 507
Score = 46 (21.3 bits), Expect = 6.1e-53, Sum P(5) = 6.1e-53
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 1012 HDAIMNAHDEEKMRLEEQASQVAQRAAEAL 1041
+ AIM+ DE EE Q+ QR + +
Sbjct: 1359 YGAIMDEEDEGSKFCEEDIDQILQRRTKTI 1388
Score = 44 (20.5 bits), Expect = 4.9e-53, Sum P(4) = 4.9e-53
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 956 SANADDAVGDKENNLEIGSSRRKGKEKVDNIGDEVDEETNI----LKSLFDANGIHSAMN 1011
+A+A+ + D + L+ RRK E VD + +++ N + S A GI A+N
Sbjct: 2414 TASANGVIVDSQPVLKKRRGRRKNVEGVDVLFINRNKQPNHVNPGINSCQVAAGISPALN 2473
Query: 1012 HDAIMNAHDEE 1022
+ D E
Sbjct: 2474 YTQSQGMLDAE 2484
Score = 44 (20.5 bits), Expect = 6.1e-53, Sum P(5) = 6.1e-53
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 1089 GSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQFEVASSSANVARF 1148
GS S+ + +S + S+ SSS + ++ + + ASSS++ +
Sbjct: 2124 GSDSSSDSDSDSDRSSCSSRSSSSSSSSSSSCSHSRSGSSSSS-SSSCSSASSSSSSSSS 2182
Query: 1149 ADTRTSRSSKNASDVQPE 1166
+ + +S SS SD E
Sbjct: 2183 SSSSSSSSSSEESDSDEE 2200
Score = 42 (19.8 bits), Expect = 7.5e-05, Sum P(4) = 7.5e-05
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 491 RKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESG 537
+K+R +D+ + DSD + SSR+ + S SG
Sbjct: 2116 KKQRVSKRGSDSSSDSDSDSD-RSSCSSRSSSSSSSSSSSCSHSRSG 2161
Score = 41 (19.5 bits), Expect = 1.2e-52, Sum P(5) = 1.2e-52
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 1086 PLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVG 1129
P G+SS+ T N G ++ S +L + RG ++N G
Sbjct: 2405 PESGTSSHLTASAN--------GVIVDSQPVLKKRRGRRKNVEG 2440
Score = 40 (19.1 bits), Expect = 1.4e-50, Sum P(5) = 1.4e-50
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 170 VKEEHRPKRKSKEAQKPGKDR-SKQQKTVS 198
V E + ++K ++ + KD+ SK+ KT S
Sbjct: 552 VSAEGKEEKKGRKVKSKPKDKESKKPKTGS 581
Score = 40 (19.1 bits), Expect = 1.4e-50, Sum P(5) = 1.4e-50
Identities = 12/44 (27%), Positives = 19/44 (43%)
Query: 265 PFSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRPFQRL 308
P SA + ++ ++ T L D L ++D P PF L
Sbjct: 358 PASAGSASQISHFTDPIESNGFTSL-DDNLLHQVDAPNEPFTGL 400
Score = 39 (18.8 bits), Expect = 2.0e-52, Sum P(5) = 2.0e-52
Identities = 28/131 (21%), Positives = 54/131 (41%)
Query: 1032 QVAQRAAEALRQSRMLRSRDDISVPTWTGKSGTAGAPSSVRKKFGSTVGSQLIKPLEGSS 1091
+V++R +++ S R S + + S ++ + S R S+ S SS
Sbjct: 2119 RVSKRGSDSSSDSDSDSDRSSCSSRSSSSSSSSSSSCSHSRSGSSSSSSSSCSS---ASS 2175
Query: 1092 SNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAGLERQFEVASSSANVARFADT 1151
S+ + +S + +S+ + S E A+ R + A E VAS S D+
Sbjct: 2176 SSSSSSSSSSSSSSSSSEESDSDEEEAQKRAEGTPHIKAYDEES--VASLSTTHDETQDS 2233
Query: 1152 -RTSRSSKNAS 1161
+ + + N+S
Sbjct: 2234 FQMNNGTPNSS 2244
>UNIPROTKB|Q9NRZ9 [details] [associations]
symbol:HELLS "Lymphoid-specific helicase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0007067 "mitosis" evidence=IEA] [GO:0051301 "cell
division" evidence=IEA] [GO:0001655 "urogenital system development"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0043066 "negative regulation of apoptotic process"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005721
"centromeric heterochromatin" evidence=ISS] [GO:0006346
"methylation-dependent chromatin silencing" evidence=ISS]
[GO:0007275 "multicellular organismal development" evidence=ISS]
[GO:0010216 "maintenance of DNA methylation" evidence=ISS]
[GO:0031508 "centromeric heterochromatin assembly" evidence=ISS]
[GO:0000775 "chromosome, centromeric region" evidence=ISS]
[GO:0046651 "lymphocyte proliferation" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0007275 GO:GO:0005524
GO:GO:0005634 GO:GO:0051301 GO:GO:0007067 GO:GO:0003677
EMBL:CH471066 GO:GO:0006351 GO:GO:0003682 GO:GO:0001655
GO:GO:0004386 GO:GO:0005721 HSSP:Q97XQ5 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0031508
GO:GO:0010216 GO:GO:0006346 GO:GO:0046651 EMBL:AF155827
EMBL:AB102717 EMBL:AB102718 EMBL:AB102719 EMBL:AB102720
EMBL:AB102721 EMBL:AB102722 EMBL:AK314485 EMBL:AB113249
EMBL:BX538033 EMBL:AL138759 EMBL:BC015477 EMBL:BC029381
EMBL:BC030963 EMBL:BC031004 EMBL:AY007108 EMBL:AB074174
IPI:IPI00010590 IPI:IPI00807418 IPI:IPI00807455 IPI:IPI00807553
IPI:IPI00807574 IPI:IPI00807597 IPI:IPI00807667 IPI:IPI00807698
IPI:IPI00807726 RefSeq:NP_060533.2 UniGene:Hs.655830
ProteinModelPortal:Q9NRZ9 SMR:Q9NRZ9 IntAct:Q9NRZ9 STRING:Q9NRZ9
PhosphoSite:Q9NRZ9 DMDM:74761670 PaxDb:Q9NRZ9 PRIDE:Q9NRZ9
DNASU:3070 Ensembl:ENST00000348459 Ensembl:ENST00000394036
Ensembl:ENST00000394044 Ensembl:ENST00000394045 GeneID:3070
KEGG:hsa:3070 UCSC:uc001kjs.3 UCSC:uc009xul.3 UCSC:uc009xum.3
CTD:3070 GeneCards:GC10P096305 H-InvDB:HIX0017337 HGNC:HGNC:4861
HPA:CAB004491 MIM:603946 neXtProt:NX_Q9NRZ9 PharmGKB:PA35054
HOVERGEN:HBG060049 OrthoDB:EOG4SN1N4 PhylomeDB:Q9NRZ9 ChiTaRS:HELLS
GenomeRNAi:3070 NextBio:12147 ArrayExpress:Q9NRZ9 Bgee:Q9NRZ9
Genevestigator:Q9NRZ9 GermOnline:ENSG00000119969 Uniprot:Q9NRZ9
Length = 838
Score = 350 (128.3 bits), Expect = 6.2e-54, Sum P(4) = 6.2e-54
Identities = 74/185 (40%), Positives = 110/185 (59%)
Query: 717 VMRKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVWKDQGHRVLLFAQTQ 772
++RK CNHP L+E ++ E S K ++ ++L K +GH+VLLF+Q
Sbjct: 566 LLRKCCNHPYLIEYPIDPVTQEFKIDEELVTNSGKFLILDRMLPELKKRGHKVLLFSQMT 625
Query: 773 QMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTG 832
MLDIL + + + R+DG +R + +N +VFIF+++T+ GGLG NLT
Sbjct: 626 SMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFIFLVSTRAGGLGINLTA 685
Query: 833 ANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNK 892
A+ VII+D DWNP +D+QA++R RIGQ + V VYRL+T TI++K+ R K L
Sbjct: 686 ADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKL 745
Query: 893 IL-KN 896
I+ KN
Sbjct: 746 IIHKN 750
Score = 229 (85.7 bits), Expect = 6.2e-54, Sum P(4) = 6.2e-54
Identities = 51/159 (32%), Positives = 84/159 (52%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
++IT++E L W Y ++DEGHRI+N + K+ +++++TG P+Q
Sbjct: 328 VVITSFEIAMRDRNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQ 387
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM 657
N LSELWSL +F+ P L FE+ F IT + +L ++
Sbjct: 388 NNLSELWSLLNFLLPDVFDDLKSFESWF--DITSLSETAEDIIAKEREQNVLHMLHQILT 445
Query: 658 PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFL 696
P+LLRR+K+DV ++P K E V++ L+++Q Y A +
Sbjct: 446 PFLLRRLKSDVALEVPPKREVVVYAPLSKKQEIFYTAIV 484
Score = 124 (48.7 bits), Expect = 6.2e-54, Sum P(4) = 6.2e-54
Identities = 26/83 (31%), Positives = 44/83 (53%)
Query: 405 YQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQ 464
YQ G++WL L GI+ DEMGLGKT+Q ++ + + + P +V P++ L
Sbjct: 226 YQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATIALMIQRGVPGPFLVCGPLSTLPN 285
Query: 465 WKREAEKWYPSFHVELLHDSAQD 487
W E +++ P L H + ++
Sbjct: 286 WMAEFKRFTPDIPTMLYHGTQEE 308
Score = 41 (19.5 bits), Expect = 5.8e-27, Sum P(2) = 5.8e-27
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 125 LQHA----LTADRLKSLKKTKAQLVKELSHF 151
LQH L D +K K +L++EL F
Sbjct: 343 LQHCYWKYLIVDEGHRIKNMKCRLIRELKRF 373
Score = 40 (19.1 bits), Expect = 4.9e-21, Sum P(4) = 4.9e-21
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 791 RMDGLTPVKQRMALIDEYNNSSD 813
+M+ P+K++M + NS D
Sbjct: 809 QMNASGPIKEKMGIFKILENSED 831
Score = 37 (18.1 bits), Expect = 6.2e-54, Sum P(4) = 6.2e-54
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 162 HDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQK 195
+ KF+ ++++ ++K KE + K+ K +K
Sbjct: 78 YSKFLLTKMEQQQLEEQKKKEKLERKKESLKVKK 111
>UNIPROTKB|J9PA79 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
OMA:KNQRGIQ EMBL:AAEX03016768 EMBL:AAEX03016769
Ensembl:ENSCAFT00000043847 Uniprot:J9PA79
Length = 1026
Score = 328 (120.5 bits), Expect = 6.3e-54, Sum P(5) = 6.3e-54
Identities = 66/135 (48%), Positives = 91/135 (67%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K +V+ +L K +G RV+LF+Q MLDILE L + Y R+DG T + +R+ L
Sbjct: 853 SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHL 912
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
IDE+N D+F+F+L+TK GGLG NLT AN VI+ D D NP D QA +R R+GQ ++V
Sbjct: 913 IDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 972
Query: 865 TVYRLITRGTIEEKV 879
V +LI++GTIEE +
Sbjct: 973 LVIKLISQGTIEESM 987
Score = 195 (73.7 bits), Expect = 6.3e-54, Sum P(5) = 6.3e-54
Identities = 59/206 (28%), Positives = 106/206 (51%)
Query: 535 ESGLLITTYE-QLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVH---R 588
E +++TTY + ++ L ++ YA+ DEGH ++N S+ + L T++ R
Sbjct: 596 EYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMG---SIRYQHLMTINANNR 652
Query: 589 IIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRC 648
+++TG P+QN L EL SL +FV P + +E + +A + R
Sbjct: 653 LLLTGTPVQNNLLELMSLLNFVMPH---MFSSSTSEIRRMFS-SKTKSADEQSIYEKERI 708
Query: 649 AVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGS 708
A + +I P++LRR+K +V QLP K + + C+++E+Q +Y + +++ ++
Sbjct: 709 AHA-KQIIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLF--NRLKKSINNI 765
Query: 709 RNSLYGIDVM---RKICNHPDLLERE 731
S +VM RK+ NHP LL R+
Sbjct: 766 EKSTEMCNVMMQLRKMANHP-LLHRQ 790
Score = 180 (68.4 bits), Expect = 6.3e-54, Sum P(5) = 6.3e-54
Identities = 40/102 (39%), Positives = 56/102 (54%)
Query: 390 GGLKIPE-SIFN---NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH 445
GG I + SI N +L YQKVG+ WL +H GI+ DEMGLGKTIQ ++FL L+
Sbjct: 481 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540
Query: 446 FSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQD 487
P ++V P + + W RE W P+ V + S ++
Sbjct: 541 QEGNKGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEE 582
Score = 52 (23.4 bits), Expect = 6.3e-54, Sum P(5) = 6.3e-54
Identities = 23/92 (25%), Positives = 41/92 (44%)
Query: 51 DKSESIDP--SSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDG 108
D + + P SST QEK +NK + + L +S + ++DI + + +
Sbjct: 95 DSEDIVSPNCSSTVQEKKFNKDTVIIVSEPSEDEESQGLPTMSGRNNDDISELEDLSE-- 152
Query: 109 REDEKSAVQASPNDMTLQHALTADRLKSLKKT 140
ED K A + ++ Q + D LK ++ T
Sbjct: 153 LEDLKDAKLQTLKELFPQRS-DNDLLKLIEST 183
Score = 44 (20.5 bits), Expect = 4.2e-53, Sum P(5) = 4.2e-53
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 110 EDEKSA---VQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPK 153
EDE+S + N+ + L+ LK K Q +KEL FP+
Sbjct: 126 EDEESQGLPTMSGRNNDDISELEDLSELEDLKDAKLQTLKEL--FPQ 170
Score = 38 (18.4 bits), Expect = 1.1e-23, Sum P(4) = 1.1e-23
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 266 FSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRPF--QRLK 309
FS+S RM S ++ + + E + +PF +R+K
Sbjct: 679 FSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVK 724
Score = 37 (18.1 bits), Expect = 6.3e-54, Sum P(5) = 6.3e-54
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 149 SHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQK 195
S FP G K E Q+ K + K K K + KP +K++K
Sbjct: 304 SEFPNG---K--EASSRSQNYPKNAAKTKLKQKCSMKPQNGFNKKRK 345
Score = 37 (18.1 bits), Expect = 4.7e-53, Sum P(4) = 4.7e-53
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 245 QPGPSNKQNVPDEQE 259
QPGPS+ ++ E+E
Sbjct: 29 QPGPSSPISLSAEEE 43
>DICTYBASE|DDB_G0267556 [details] [associations]
symbol:DDB_G0267556 "CHR group protein" species:44689
"Dictyostelium discoideum" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0267556
GO:GO:0005524 GO:GO:0003677 EMBL:AAFI02000003 GO:GO:0004386
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
RefSeq:XP_647125.1 ProteinModelPortal:Q55GQ9
EnsemblProtists:DDB0233433 GeneID:8615929 KEGG:ddi:DDB_G0267556
InParanoid:Q55GQ9 OMA:CANVVIF ProtClustDB:CLSZ2501118
Uniprot:Q55GQ9
Length = 1159
Score = 316 (116.3 bits), Expect = 7.1e-54, Sum P(4) = 7.1e-54
Identities = 68/183 (37%), Positives = 110/183 (60%)
Query: 716 DVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQG---HRVLLFAQTQ 772
DV + +C H DL ++ IPD E S K + ++L K+ G +VL+F+Q
Sbjct: 957 DVFKTVCEHEDLGDKYW---IPDEQFIETSTKCLKLKEILA--KEIGVNKSKVLIFSQMT 1011
Query: 773 QMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTG 832
++LDILE L GY + R+DG TPV +R ++ID +++ + +F+L+T GGLG NLT
Sbjct: 1012 RVLDILEDVLDIFGYNFTRLDGSTPVNERQSIIDHFSSKETIPVFLLSTNSGGLGINLTC 1071
Query: 833 ANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNK 892
AN VI +D +NP D QA +RA R+GQ+++V +Y+L+ T++ ++ K L +
Sbjct: 1072 ANVVIFYDLSFNPQVDRQAEDRAHRLGQEREVIIYKLLAENTVDINIHESANQKKKLNDN 1131
Query: 893 ILK 895
+L+
Sbjct: 1132 VLE 1134
Score = 195 (73.7 bits), Expect = 7.1e-54, Sum P(4) = 7.1e-54
Identities = 58/203 (28%), Positives = 103/203 (50%)
Query: 512 YEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHRI 569
Y GNL R +++L R + + +++TTY L ++ L ++ + +LDE I
Sbjct: 622 YYGNLREREELRYELKKKRPGK-DFNVILTTYNLLFANNDRGFLKRFDYSFLILDEAQNI 680
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629
+N +++ ++ HR+++TG P+QN L ELWSL +F+ P G V + + +
Sbjct: 681 KNSDSKRYKNIFKIGAHHRLLLTGTPLQNNLYELWSLLNFLMPHIFG--SVKKDNYLLNQ 738
Query: 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQR 689
+ Y N S R ++ ++ P++LRR+K+ V+ +L K EHV C L + Q
Sbjct: 739 LLE-Y-NGDDCD-SAITR----MKKILSPFILRRLKSTVSKELKPKIEHVEICKLPKFQD 791
Query: 690 AVYRAFLASSEVEQILDGSRNSL 712
Y+ + S+ + L RN L
Sbjct: 792 ETYKNIIERSKSQWKL---RNEL 811
Score = 175 (66.7 bits), Expect = 7.1e-54, Sum P(4) = 7.1e-54
Identities = 34/87 (39%), Positives = 51/87 (58%)
Query: 395 PESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYK--- 451
P+ I + +YQ +G+ W+ L+ ++ GI+ DEMGLGKT+Q +S L H Y
Sbjct: 535 PKIINKVMRNYQLIGLNWMAVLYKEKINGILADEMGLGKTVQTISLLA--HIKEAYNDNG 592
Query: 452 PSIVVCPVTLLRQWKREAEKWYPSFHV 478
P +VV P T+L W+RE + W PS +
Sbjct: 593 PHLVVVPATILANWEREFQTWCPSLSI 619
Score = 66 (28.3 bits), Expect = 7.1e-54, Sum P(4) = 7.1e-54
Identities = 33/137 (24%), Positives = 64/137 (46%)
Query: 64 EKLYNKLRAVEFE--IGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSA--VQAS 119
E+ +K + VE + + VD L + TK+ +DD D TE D E+E+ V
Sbjct: 330 EEFKDKKKKVENDKITKDILGQVDKLLKKETKK---VDDSD-TEDDEEEEEEEVLFVNKK 385
Query: 120 PNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHD--KFIQDLVKEEHRPK 177
L + T + KS K K ++++ S + S+ IE D K + V++ + +
Sbjct: 386 RKSNPLDGSSTPTKPKSKPKPKKIIIEDDSE-TEDEKSQIIEIDDEKEEEKQVEQVEQVE 444
Query: 178 RKSKEAQKPGKDRSKQQ 194
+ + Q+ G++ +++
Sbjct: 445 QVEQVEQEEGEEEEEEE 461
Score = 56 (24.8 bits), Expect = 7.7e-53, Sum P(4) = 7.7e-53
Identities = 27/109 (24%), Positives = 47/109 (43%)
Query: 59 SSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDGREDEKSAVQA 118
SST K NK + +S + ++ S K + D +D D +++ EDE +
Sbjct: 78 SSTQSLKSNNKKSSTSSN-NKKSSPIKK-KKQSKKVEEDEEDEDEEDEEDDEDEFNLPNV 135
Query: 119 SPNDMTL-QHALTADRLKSLKKTKAQLVKELSHFP---KGITSKGIEHD 163
S Q + K L++T+ +L+K+ S P K + + G D
Sbjct: 136 SVEQRKKKQKQQEQESSKLLEETE-KLLKQPSVIPWTSKNVLNNGTSKD 183
Score = 41 (19.5 bits), Expect = 2.8e-51, Sum P(4) = 2.8e-51
Identities = 20/89 (22%), Positives = 39/89 (43%)
Query: 52 KSESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRV-----STKEDNDIDDGDSTEQ 106
KS +D SST K +K + + I + T D ++ +E+ ++ + EQ
Sbjct: 387 KSNPLDGSSTPT-KPKSKPKPKKIIIEDDSETEDEKSQIIEIDDEKEEEKQVEQVEQVEQ 445
Query: 107 -------DGREDEKSAVQASPNDMTLQHA 128
+G E+E+ +++ P L +A
Sbjct: 446 VEQVEQEEGEEEEEEEIESEPTIERLIYA 474
Score = 41 (19.5 bits), Expect = 6.0e-38, Sum P(3) = 6.0e-38
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 491 RKKRAKSSDTDNDGEGSHDSDYEGNL 516
+ K+ + + D D E D + E NL
Sbjct: 107 QSKKVEEDEEDEDEEDEEDDEDEFNL 132
Score = 38 (18.4 bits), Expect = 2.6e-50, Sum P(5) = 2.6e-50
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 161 EHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQK 195
+ D+F V E R K++ ++ Q+ K + +K
Sbjct: 126 DEDEFNLPNVSVEQRKKKQKQQEQESSKLLEETEK 160
Score = 38 (18.4 bits), Expect = 2.6e-50, Sum P(5) = 2.6e-50
Identities = 24/127 (18%), Positives = 52/127 (40%)
Query: 53 SESIDPSSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVST--KEDNDIDDGDSTEQDGRE 110
+E +D S T + + V+ + + D+ ++ DN+ D DS ++ +
Sbjct: 2 NEEVDASQTKRRRF----SMVDVNYVSESENSDNYESDASDYSSDNNSDYSDSEKRRKKR 57
Query: 111 ----DEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKGITSKGIEHDKFI 166
+ + + + T Q + + + + K + + K+ S K SK +E D+
Sbjct: 58 VVNNNNNNTKKTTTVTNTKQSSTQSLKSNNKKSSTSSNNKKSSPIKKKKQSKKVEEDEED 117
Query: 167 QDLVKEE 173
+D EE
Sbjct: 118 EDEEDEE 124
>UNIPROTKB|Q8EGF3 [details] [associations]
symbol:SO_1651 "Helicase/SNF2 family domain protein"
species:211586 "Shewanella oneidensis MR-1" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0008270 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 477 (173.0 bits), Expect = 8.3e-54, Sum P(2) = 8.3e-54
Identities = 125/370 (33%), Positives = 201/370 (54%)
Query: 534 SESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTG 593
SE +++TTY + + + + VLDE +I+N A++S + K LQ+ ++ +TG
Sbjct: 728 SEFDVVVTTYPLMVRDNDYYQAQAFEHIVLDEAQQIKNAQAKVSQMIKALQSPFKLCLTG 787
Query: 594 APIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLR 653
P++N L EL SL DF PG LG F EF I Y ++ QV VL
Sbjct: 788 TPLENHLGELKSLMDFCLPGLLGTTAYFNKEFRNRIE--RYGDSE--QVK-------VLS 836
Query: 654 DLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSE--VEQIL--DGSR 709
I P++LRR KA+V +LP KTE L ++QR +Y + S E + ++ G
Sbjct: 837 QRIAPFVLRRTKAEVVTELPPKTEIYQSLELEKDQRNLYESIRLSMEKKIRELFATQGVA 896
Query: 710 NS-LYGIDVMRKI---CNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRV 765
S + +D + K+ C P L++ EQ+ ++ + + K+ ++Q L +G ++
Sbjct: 897 GSHIEFLDALLKLRQACCDPRLVKLEQAQKV------KNNAKLNWLSQNLPEMVQEGRKI 950
Query: 766 LLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGG 825
L+F+Q ML ++E L + +Y ++ G T ++Q ID++ D +F+++ K GG
Sbjct: 951 LIFSQFTSMLILIEELLQSLEIDYSKLTGQTRLRQ--VQIDKFQEG-DTPVFLISLKAGG 1007
Query: 826 LGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIY 885
G NLT A+ VI +DP WNP+ + QA +RA RIGQ+ V VY+LI GT+EEK+ Q +
Sbjct: 1008 TGLNLTAADTVIHYDPWWNPAAERQATDRAHRIGQENPVFVYKLIAEGTVEEKIQEMQQH 1067
Query: 886 KHFLTNKILK 895
K L + IL+
Sbjct: 1068 KQGLADSILE 1077
Score = 169 (64.5 bits), Expect = 8.3e-54, Sum P(2) = 8.3e-54
Identities = 35/92 (38%), Positives = 54/92 (58%)
Query: 395 PESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFL----GALHFSNMY 450
P + L YQ+ G+ WL L + GGI+ D+MGLGKTIQ L+FL + +
Sbjct: 625 PTQLQAELRPYQQQGLNWLCFLKEYQLGGILADDMGLGKTIQTLAFLLKQKQLKSAAGPH 684
Query: 451 KPSIVVCPVTLLRQWKREAEKWYPSFHVELLH 482
PS+++CP +L+ W +EA K+ PS + ++H
Sbjct: 685 LPSLIICPTSLVGNWAKEAAKFAPSLTLAVIH 716
>TIGR_CMR|SO_1651 [details] [associations]
symbol:SO_1651 "Snf2 family protein" species:211586
"Shewanella oneidensis MR-1" [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR007527
Pfam:PF00176 Pfam:PF00271 PROSITE:PS50966 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003677 GO:GO:0008270
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000294304 RefSeq:NP_717262.2 ProteinModelPortal:Q8EGF3
GeneID:1169445 KEGG:son:SO_1651 PATRIC:23522939 OMA:SSSHIEF
ProtClustDB:CLSK906361 Uniprot:Q8EGF3
Length = 1096
Score = 477 (173.0 bits), Expect = 8.3e-54, Sum P(2) = 8.3e-54
Identities = 125/370 (33%), Positives = 201/370 (54%)
Query: 534 SESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTG 593
SE +++TTY + + + + VLDE +I+N A++S + K LQ+ ++ +TG
Sbjct: 728 SEFDVVVTTYPLMVRDNDYYQAQAFEHIVLDEAQQIKNAQAKVSQMIKALQSPFKLCLTG 787
Query: 594 APIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLR 653
P++N L EL SL DF PG LG F EF I Y ++ QV VL
Sbjct: 788 TPLENHLGELKSLMDFCLPGLLGTTAYFNKEFRNRIE--RYGDSE--QVK-------VLS 836
Query: 654 DLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSE--VEQIL--DGSR 709
I P++LRR KA+V +LP KTE L ++QR +Y + S E + ++ G
Sbjct: 837 QRIAPFVLRRTKAEVVTELPPKTEIYQSLELEKDQRNLYESIRLSMEKKIRELFATQGVA 896
Query: 710 NS-LYGIDVMRKI---CNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRV 765
S + +D + K+ C P L++ EQ+ ++ + + K+ ++Q L +G ++
Sbjct: 897 GSHIEFLDALLKLRQACCDPRLVKLEQAQKV------KNNAKLNWLSQNLPEMVQEGRKI 950
Query: 766 LLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGG 825
L+F+Q ML ++E L + +Y ++ G T ++Q ID++ D +F+++ K GG
Sbjct: 951 LIFSQFTSMLILIEELLQSLEIDYSKLTGQTRLRQ--VQIDKFQEG-DTPVFLISLKAGG 1007
Query: 826 LGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIY 885
G NLT A+ VI +DP WNP+ + QA +RA RIGQ+ V VY+LI GT+EEK+ Q +
Sbjct: 1008 TGLNLTAADTVIHYDPWWNPAAERQATDRAHRIGQENPVFVYKLIAEGTVEEKIQEMQQH 1067
Query: 886 KHFLTNKILK 895
K L + IL+
Sbjct: 1068 KQGLADSILE 1077
Score = 169 (64.5 bits), Expect = 8.3e-54, Sum P(2) = 8.3e-54
Identities = 35/92 (38%), Positives = 54/92 (58%)
Query: 395 PESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFL----GALHFSNMY 450
P + L YQ+ G+ WL L + GGI+ D+MGLGKTIQ L+FL + +
Sbjct: 625 PTQLQAELRPYQQQGLNWLCFLKEYQLGGILADDMGLGKTIQTLAFLLKQKQLKSAAGPH 684
Query: 451 KPSIVVCPVTLLRQWKREAEKWYPSFHVELLH 482
PS+++CP +L+ W +EA K+ PS + ++H
Sbjct: 685 LPSLIICPTSLVGNWAKEAAKFAPSLTLAVIH 716
>POMBASE|SPCC1235.05c [details] [associations]
symbol:fft2 "fun thirty related protein Fft2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000790
"nuclear chromatin" evidence=NAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=ISM;ISS] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006338 "chromatin remodeling" evidence=NAS]
[GO:0051276 "chromosome organization" evidence=ISS]
InterPro:IPR000330 InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 PomBase:SPCC1235.05c GO:GO:0005829
GO:GO:0005524 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0003677
GO:GO:0006338 GO:GO:0000790 GO:GO:0004003 HSSP:Q97XQ5
eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016585 OrthoDB:EOG4BCHW4 PIR:T40879 RefSeq:NP_587731.1
ProteinModelPortal:O74842 STRING:O74842 EnsemblFungi:SPCC1235.05c.1
GeneID:2539045 KEGG:spo:SPCC1235.05c KO:K14439 NextBio:20800219
Uniprot:O74842
Length = 1284
Score = 348 (127.6 bits), Expect = 9.6e-54, Sum P(3) = 9.6e-54
Identities = 108/334 (32%), Positives = 170/334 (50%)
Query: 671 QLPKKTEH-VLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLY-GIDVM-----RKIC- 722
QL K H +LF ++++ A E EQ + + +Y ++VM ++C
Sbjct: 847 QLRKAANHALLFRKFYDDEKLKQMAKDIMQE-EQYKNANEQYIYEDMEVMSDFELHRLCR 905
Query: 723 NHPDLLEREQSCQIPDYGNPER-SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESF 781
+ P L QS + D +P S K++V+ ++L K++G R+LLF+Q QMLDILE
Sbjct: 906 SFPTL----QSYTLKD--DPWMDSGKIRVLKELLPKMKEEGSRILLFSQFTQMLDILEQV 959
Query: 782 LIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDP 841
L Y R+DG T V+ R +ID+++ DV +F+L+TK GG G NL AN VI++D
Sbjct: 960 LDTLKISYVRLDGSTQVEVRQDIIDQFHKEEDVTVFLLSTKAGGFGINLACANVVILYDC 1019
Query: 842 DWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRR 901
+NP D+QA +RA R+GQ ++VTV RLIT TIEE + K L + + + R
Sbjct: 1020 SYNPFDDLQAEDRAHRVGQVREVTVIRLITDNTIEEYIQKLANTKLALDMSLSSDGKDRE 1079
Query: 902 FFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVNVVGXXXXXXXXXXXXXAASANADD 961
R ++D+ L+++ NG +T+ ++ + V A N
Sbjct: 1080 EIGERLVQDM--LDEENNGNNTKPEITGNESDGEFKV-----SSSNNSKQTDAEETNTGV 1132
Query: 962 AV-GDKENNLEIGSSRRKGKEKVDNIGDEVDEET 994
+ G + N++E + G EK NI E+ ET
Sbjct: 1133 PLEGSQPNSVE-KTDLADGDEKA-NIKTEMKSET 1164
Score = 181 (68.8 bits), Expect = 9.6e-54, Sum P(3) = 9.6e-54
Identities = 43/107 (40%), Positives = 61/107 (57%)
Query: 383 PPFVTLEGGLKIPESIFNN--LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSF 440
P FVT + P+++ ++ L YQ VGV WL L+ Q+ GI+ DEMGLGKT QV++F
Sbjct: 534 PKFVTEQ-----PKTLASDVQLKSYQLVGVNWLHLLYQQKLSGILADEMGLGKTCQVVAF 588
Query: 441 LGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQD 487
L + P +VV P + L W RE ++ PS VE + S Q+
Sbjct: 589 FALLLEQGHHGPHLVVVPSSTLENWLRELARFCPSLRVEPYYGSQQE 635
Score = 175 (66.7 bits), Expect = 9.6e-54, Sum P(3) = 9.6e-54
Identities = 53/179 (29%), Positives = 82/179 (45%)
Query: 538 LLITTYEQLRLLGEK----LLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTG 593
+L+TTY QL ++ L + V DEGH ++N +E L R+++TG
Sbjct: 652 ILVTTY-QLATNNKEDRSFLKHQNFDVCVYDEGHYLKNRMSERYKHLMNLNANFRLLLTG 710
Query: 594 APIQNKLSELWSLFDFVFPGKLGV-LPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVL 652
P+QN L EL SL F+ P + + F T + L R
Sbjct: 711 TPLQNNLKELVSLLAFILPNMFDSDMDDLDVIFKAKPTADADIEQALLSKQRISRA---- 766
Query: 653 RDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL-DGSRN 710
+ ++ P++LRR K V LPKKT+ + C L+E Q +Y + A + +Q+ D RN
Sbjct: 767 KTMMTPFVLRRRKNQVLNDLPKKTQIIEHCKLSENQLEIYNRYAALQKNQQLRRDDKRN 825
Score = 49 (22.3 bits), Expect = 6.7e-27, Sum P(2) = 6.7e-27
Identities = 26/102 (25%), Positives = 46/102 (45%)
Query: 95 DNDIDDGDSTEQDGREDEKSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPKG 154
D+D+DD D + + QA + + A T L++ K Q++ +L PK
Sbjct: 733 DSDMDDLDVIFKAKPTADADIEQALLSKQRISRAKTMMTPFVLRRRKNQVLNDL---PK- 788
Query: 155 ITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKD-RSKQQK 195
++ IEH K ++ ++ +R K Q D R+K+ K
Sbjct: 789 -KTQIIEHCKLSENQLEIYNRYAALQKNQQLRRDDKRNKRSK 829
Score = 39 (18.8 bits), Expect = 7.4e-26, Sum P(2) = 7.4e-26
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 167 QDLVKEEHRPKRKSKEAQKPGKDRS 191
Q L +++ R KR + + GK S
Sbjct: 816 QQLRRDDKRNKRSKNDEESDGKSLS 840
>TAIR|locus:2051678 [details] [associations]
symbol:ETL1 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0004386 "helicase activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0003677 GO:GO:0004386 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC005936 HOGENOM:HOG000172362
KO:K14439 EMBL:AY059857 EMBL:BT002576 IPI:IPI00520453 PIR:H84432
RefSeq:NP_178318.1 UniGene:At.13358 ProteinModelPortal:Q9ZUL5
SMR:Q9ZUL5 IntAct:Q9ZUL5 PaxDb:Q9ZUL5 PRIDE:Q9ZUL5
EnsemblPlants:AT2G02090.1 GeneID:814740 KEGG:ath:AT2G02090
TAIR:At2g02090 InParanoid:Q9ZUL5 OMA:CAKISAD PhylomeDB:Q9ZUL5
ProtClustDB:CLSN2683669 ArrayExpress:Q9ZUL5 Genevestigator:Q9ZUL5
Uniprot:Q9ZUL5
Length = 763
Score = 341 (125.1 bits), Expect = 1.3e-53, Sum P(4) = 1.3e-53
Identities = 68/152 (44%), Positives = 96/152 (63%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K + +A++L K GHRVL+F+Q MLDILE L G YRR+DG T V R +
Sbjct: 587 SAKCRTLAELLPSMKKSGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTI 646
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+D +NN +F +L+T+ GG G NLTGA+ VII D D+NP D QA +R RIGQ + V
Sbjct: 647 VDTFNNDKSIFACLLSTRAGGQGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIGQTKPV 706
Query: 865 TVYRLITRGTIEEKVYHRQIYKHFLTNKILKN 896
T++RL+T+ T++E +Y K L +L++
Sbjct: 707 TIFRLVTKSTVDENIYEIAKRKLVLDAAVLES 738
Score = 183 (69.5 bits), Expect = 1.3e-53, Sum P(4) = 1.3e-53
Identities = 42/102 (41%), Positives = 60/102 (58%)
Query: 388 LEGGLKIPESIFNNLFD-YQKVGVQWLWELHCQRA-GGIIGDEMGLGKTIQVLSFLGAL- 444
++ K +S F + YQ VGV +L L+ + G I+ DEMGLGKTIQ +++L L
Sbjct: 198 IDDACKAEDSDFQPILKPYQLVGVNFLLLLYKKGIEGAILADEMGLGKTIQAITYLTLLS 257
Query: 445 HFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQ 486
+N P +VVCP ++L W+RE KW PSF V H +A+
Sbjct: 258 RLNNDPGPHLVVCPASVLENWERELRKWCPSFTVLQYHGAAR 299
Score = 159 (61.0 bits), Expect = 1.3e-53, Sum P(4) = 1.3e-53
Identities = 52/191 (27%), Positives = 90/191 (47%)
Query: 558 WGYAVLDEGHRIRNPNAEI--SLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKL 615
W ++DE H +++ N+ +L+ R+++TG P+QN L ELWSL +F+ P
Sbjct: 347 WSCVLMDEAHALKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFMLPD-- 404
Query: 616 GVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKK 675
+F E + + NA ++ T ++ ++ P++LRR+K+DV QL K
Sbjct: 405 ----IFTTE---NVDLKKLLNAEDTELITR------MKSILGPFILRRLKSDVMQQLVPK 451
Query: 676 TEHVLFCSLTEEQRAVYRA----FLASSEVEQILDGSR--NSLYG----------IDVMR 719
+ V + + +Q Y+ + A+S+ + S+ NSL R
Sbjct: 452 IQRVEYVLMERKQEDAYKEAIEEYRAASQARLVKLSSKSLNSLAKALPKRQISNYFTQFR 511
Query: 720 KICNHPDLLER 730
KI NHP L+ R
Sbjct: 512 KIANHPLLIRR 522
Score = 51 (23.0 bits), Expect = 1.3e-53, Sum P(4) = 1.3e-53
Identities = 19/70 (27%), Positives = 26/70 (37%)
Query: 90 VSTKEDNDIDDGDSTEQDGREDE-KSAVQASPNDMTLQHALTADRLKSLKKTKAQLVKEL 148
+ +E +D DD D E EDE S + L+ K A L KEL
Sbjct: 113 IEDEEASD-DDDDEAESSASEDEFGGGGGGSGGRRGEDEDVVGKALQKCAKISADLRKEL 171
Query: 149 SHFPKGITSK 158
G+T +
Sbjct: 172 YGTSSGVTDR 181
>FB|FBgn0086613 [details] [associations]
symbol:Ino80 "Ino80" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0031011 "Ino80 complex" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] [GO:0000975 "regulatory region DNA
binding" evidence=IDA] [GO:0010468 "regulation of gene expression"
evidence=IMP] [GO:0000790 "nuclear chromatin" evidence=IDA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR020838
Pfam:PF00176 Pfam:PF00271 Pfam:PF13892 PROSITE:PS51194
PROSITE:PS51413 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0006355 GO:GO:0006281 GO:GO:0006351 GO:GO:0016887
GO:GO:0006338 GO:GO:0031011 GO:GO:0006310 GO:GO:0005700
GO:GO:0010468 HSSP:Q97XQ5 eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0003678 GO:GO:0000975 KO:K11665
EMBL:AY069786 RefSeq:NP_732413.1 UniGene:Dm.33518
ProteinModelPortal:Q9VDY1 SMR:Q9VDY1 IntAct:Q9VDY1 STRING:Q9VDY1
PaxDb:Q9VDY1 EnsemblMetazoa:FBtr0083771 GeneID:42314
KEGG:dme:Dmel_CG31212 UCSC:CG31212-RA CTD:54617 FlyBase:FBgn0086613
GeneTree:ENSGT00680000100052 InParanoid:Q9VDY1 OMA:NTMAEVR
OrthoDB:EOG4SQVBH PhylomeDB:Q9VDY1 ChiTaRS:INO80 GenomeRNAi:42314
NextBio:828189 Bgee:Q9VDY1 Uniprot:Q9VDY1
Length = 1638
Score = 336 (123.3 bits), Expect = 1.4e-53, Sum P(5) = 1.4e-53
Identities = 60/136 (44%), Positives = 94/136 (69%)
Query: 747 KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALID 806
K+ V+ +L K GHRVL+++Q +M+D+LE ++ + Y R+DG + + R ++
Sbjct: 1157 KLFVLDNLLTRLKANGHRVLIYSQMTKMIDLLEEYMWHRKHRYMRLDGSSKISARRDMVA 1216
Query: 807 EYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866
++ +D+F+F+L+T+ GGLG NLT A+ VI +D DWNP+ D QA +RA R+GQ + VTV
Sbjct: 1217 DFQTRADIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTV 1276
Query: 867 YRLITRGTIEEKVYHR 882
YRLI +GTIEE++ R
Sbjct: 1277 YRLICKGTIEERILQR 1292
Score = 229 (85.7 bits), Expect = 1.4e-53, Sum P(5) = 1.4e-53
Identities = 63/209 (30%), Positives = 107/209 (51%)
Query: 538 LLITTYEQLRLLGEKLLD-VEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPI 596
++IT+Y QL + K + ++W Y VLDE I++ ++ + +R++++G PI
Sbjct: 643 VVITSY-QLVVSDYKYFNRIKWQYMVLDEAQAIKSAASQRWKLLLGFSCRNRLLLSGTPI 701
Query: 597 QNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLI 656
QN ++ELW+L F+ P F F+ I N + + R ++L+
Sbjct: 702 QNSMAELWALLHFIMPTLFDSHDEFNEWFSKDIESHA-ENKTGIDEKQISRLHMILK--- 757
Query: 657 MPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL---DGSR---N 710
P++LRR+K DV +L K E +++C LT Q+ +YRA +E +L GS +
Sbjct: 758 -PFMLRRIKKDVENELSDKIEIMVYCPLTIRQKLLYRALKQKIRIEDLLHLTSGSTTTSS 816
Query: 711 SLYGIDVM------RKICNHPDLLEREQS 733
S ++M RK+CNHP+L ER +
Sbjct: 817 SSSASNLMNLVMQFRKVCNHPELFERRDA 845
Score = 154 (59.3 bits), Expect = 1.4e-53, Sum P(5) = 1.4e-53
Identities = 32/86 (37%), Positives = 50/86 (58%)
Query: 395 PESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLG--ALHFSNMYKP 452
P+ L YQ G+ WL ++ Q GI+ DEMGLGKT+Q ++FL A H+ ++ P
Sbjct: 528 PKMFKGTLKGYQIKGMTWLANIYDQGISGILADEMGLGKTVQSIAFLCHIAEHYG-VWGP 586
Query: 453 SIVVCPVTLLRQWKREAEKWYPSFHV 478
+V+ P + L W++E ++ P F V
Sbjct: 587 FLVISPASTLHNWQQEMSRFVPDFKV 612
Score = 47 (21.6 bits), Expect = 1.4e-53, Sum P(5) = 1.4e-53
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 160 IEHDKFIQDLVKEEHRPKRKSKEAQK 185
I D+++Q L++E R +R+ K K
Sbjct: 130 ITEDEYVQQLLREHVREQRQRKNYYK 155
Score = 41 (19.5 bits), Expect = 0.00030, Sum P(4) = 0.00030
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 671 QLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRN 710
Q + T + L C T E+R + RA SE+++++ N
Sbjct: 1270 QTKQVTVYRLICKGTIEERILQRA-REKSEIQRMVISGGN 1308
Score = 37 (18.1 bits), Expect = 1.4e-53, Sum P(5) = 1.4e-53
Identities = 12/49 (24%), Positives = 23/49 (46%)
Query: 256 DEQEARSNDPFSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRP 304
D + R+ D F+ ++ E QA+ S + + PE P++ +P
Sbjct: 485 DLDKTRAFDVFAKKKEK-----EEEEQAQESVEDIKPEPRPEMKDLPQP 528
Score = 37 (18.1 bits), Expect = 1.7e-22, Sum P(5) = 1.7e-22
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 1080 GSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGN 1123
G L KP G SS + + AGK+ LL R++ N
Sbjct: 1130 GLALCKPHGGWSSIVVPDKETLIT--DAGKLFVLDNLLTRLKAN 1171
>TAIR|locus:2094083 [details] [associations]
symbol:RAD54 "homolog of RAD54" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISS] [GO:0004386 "helicase
activity" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281
"DNA repair" evidence=ISS] [GO:0000724 "double-strand break repair
via homologous recombination" evidence=RCA;IMP] [GO:0005515
"protein binding" evidence=IPI] [GO:0010332 "response to gamma
radiation" evidence=IEP;RCA] [GO:0006302 "double-strand break
repair" evidence=RCA] [GO:0006310 "DNA recombination" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0007129
"synapsis" evidence=RCA] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA] [GO:0007140 "male meiosis"
evidence=RCA] [GO:0010212 "response to ionizing radiation"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016444 "somatic cell DNA
recombination" evidence=RCA] [GO:0032204 "regulation of telomere
maintenance" evidence=RCA] [GO:0043247 "telomere maintenance in
response to DNA damage" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0045003 "double-strand break repair via synthesis-dependent
strand annealing" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003677 GO:GO:0010332 GO:GO:0004386 eggNOG:COG0553
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0045003
HOGENOM:HOG000204521 KO:K10875 EMBL:DQ912973 EMBL:AB250666
IPI:IPI00531645 RefSeq:NP_188552.3 UniGene:At.53386 SMR:Q0PCS3
IntAct:Q0PCS3 STRING:Q0PCS3 EnsemblPlants:AT3G19210.1 GeneID:821455
KEGG:ath:AT3G19210 TAIR:At3g19210 InParanoid:Q0PCS3 OMA:SDTHDRF
ProtClustDB:CLSN2693236 Genevestigator:Q0PCS3 Uniprot:Q0PCS3
Length = 910
Score = 341 (125.1 bits), Expect = 1.9e-53, Sum P(3) = 1.9e-53
Identities = 72/183 (39%), Positives = 110/183 (60%)
Query: 743 ERSEKMKVVAQVL-KVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQR 801
E S KM V++++L + + R++L + Q LD+ Y + R+DG T + +R
Sbjct: 531 ELSGKMHVLSRLLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTISKR 590
Query: 802 MALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQ 860
L++ N+ + D F F+L++K GG G NL GANR+++FDPDWNP+ D QA R WR GQ
Sbjct: 591 QKLVNRLNDPTKDEFAFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQ 650
Query: 861 KQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ------QRRFFKARNMKDLFTL 914
K+ V VYR ++ GTIEEKVY RQ+ K L K++++ Q Q +++DLF+
Sbjct: 651 KKRVYVYRFLSTGTIEEKVYQRQMSKEGL-QKVIQHEQTDNSTRQGNLLSTEDLRDLFSF 709
Query: 915 NDD 917
+ D
Sbjct: 710 HGD 712
Score = 240 (89.5 bits), Expect = 1.9e-53, Sum P(3) = 1.9e-53
Identities = 58/200 (29%), Positives = 99/200 (49%)
Query: 533 RSESGLLITTYEQLRLLGEKLLDVE-WGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIM 591
RS +LI +YE R+ K E + DE HR++N + L R+++
Sbjct: 290 RSALQVLIISYETFRMHSSKFCQSESCDLLICDEAHRLKNDQTLTNRALASLTCKRRVLL 349
Query: 592 TGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVV 651
+G P+QN L E +++ +F PG LG F + PI G A+ + + A +
Sbjct: 350 SGTPMQNDLEEFFAMVNFTNPGSLGDAAHFRHYYEAPIICGREPTATEEEKNLAADRSAE 409
Query: 652 LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL-DGSRN 710
L + ++LRR A ++ LP K V+ C +T Q +Y F++S +++ L D ++
Sbjct: 410 LSSKVNQFILRRTNALLSNHLPPKIIEVVCCKMTTLQSTLYNHFISSKNLKRALADNAKQ 469
Query: 711 S--LYGIDVMRKICNHPDLL 728
+ L I ++K+CNHP L+
Sbjct: 470 TKVLAYITALKKLCNHPKLI 489
Score = 113 (44.8 bits), Expect = 1.9e-53, Sum P(3) = 1.9e-53
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 405 YQKVGVQWLWE----LH--CQRAGGIIGDEMGLGKTIQVLSFLGAL---HFSN--MYKPS 453
+Q+ GVQ++++ LH G I+ D+MGLGKT+Q ++ L L F M K +
Sbjct: 183 HQREGVQFMFDCVSGLHGSANINGCILADDMGLGKTLQSITLLYTLLCQGFDGTPMVKKA 242
Query: 454 IVVCPVTLLRQWKREAEKW 472
I+V P +L+ W+ E +KW
Sbjct: 243 IIVTPTSLVSNWEAEIKKW 261
Score = 41 (19.5 bits), Expect = 6.2e-46, Sum P(3) = 6.2e-46
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 497 SSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLI 528
SSD D+ + D + + NP+ DL +
Sbjct: 11 SSDCDDSSDSYKDDSQDSEGENDNPECEDLAV 42
>FB|FBgn0262519 [details] [associations]
symbol:Mi-2 species:7227 "Drosophila melanogaster"
[GO:0016887 "ATPase activity" evidence=IDA;NAS] [GO:0005634
"nucleus" evidence=ISS;IDA;NAS] [GO:0004003 "ATP-dependent DNA
helicase activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=ISS] [GO:0016581 "NuRD complex" evidence=ISS;TAS]
[GO:0006333 "chromatin assembly or disassembly" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS;IDA] [GO:0003678 "DNA
helicase activity" evidence=ISS] [GO:0005700 "polytene chromosome"
evidence=IDA] [GO:0042766 "nucleosome mobilization" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0007517 "muscle
organ development" evidence=IMP] [GO:0048813 "dendrite
morphogenesis" evidence=IMP] [GO:0031491 "nucleosome binding"
evidence=IDA] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0070615
"nucleosome-dependent ATPase activity" evidence=IDA]
InterPro:IPR001841 InterPro:IPR000330 InterPro:IPR000953
InterPro:IPR001650 InterPro:IPR001965 InterPro:IPR002464
InterPro:IPR012957 InterPro:IPR012958 InterPro:IPR019787
Pfam:PF00176 Pfam:PF00271 Pfam:PF00628 Pfam:PF08073 Pfam:PF08074
PROSITE:PS00690 PROSITE:PS50013 PROSITE:PS50016 PROSITE:PS51194
SMART:SM00184 SMART:SM00249 SMART:SM00298 SMART:SM00490
Pfam:PF00385 GO:GO:0005524 EMBL:AE014296 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0000122
GO:GO:0048813 GO:GO:0007517 Gene3D:3.30.40.10 InterPro:IPR011011
InterPro:IPR013083 SUPFAM:SSF57903 GO:GO:0004003 InterPro:IPR019786
PROSITE:PS01359 GO:GO:0005700 GO:GO:0042766 InterPro:IPR016197
SUPFAM:SSF54160 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0031491 GO:GO:0016581 InterPro:IPR023780
PROSITE:PS00598 GeneTree:ENSGT00560000076896 InterPro:IPR009462
InterPro:IPR009463 Pfam:PF06461 Pfam:PF06465 KO:K11643
EMBL:AF119716 EMBL:AY113368 RefSeq:NP_001163476.1
RefSeq:NP_649154.2 UniGene:Dm.28317 ProteinModelPortal:O97159
SMR:O97159 DIP:DIP-22862N IntAct:O97159 MINT:MINT-864813
STRING:O97159 PaxDb:O97159 EnsemblMetazoa:FBtr0074919
EnsemblMetazoa:FBtr0302046 GeneID:40170 KEGG:dme:Dmel_CG8103
CTD:40170 FlyBase:FBgn0262519 InParanoid:O97159 OrthoDB:EOG4T76J4
ChiTaRS:Mi-2 GenomeRNAi:40170 NextBio:817384 Bgee:O97159
GermOnline:CG8103 Uniprot:O97159
Length = 1982
Score = 515 (186.3 bits), Expect = 2.1e-53, Sum P(4) = 2.1e-53
Identities = 125/378 (33%), Positives = 202/378 (53%)
Query: 530 RVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRI 589
R + + +L+T+YE + + L ++W V+DE HR+++ ++ + +++
Sbjct: 841 RTTQYKFNVLLTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQSKFFRILNSYTIAYKL 900
Query: 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649
++TG P+QN L EL+ L +F+ K L F+ EFA V + QV
Sbjct: 901 LLTGTPLQNNLEELFHLLNFLSRDKFNDLQAFQGEFA---DV-----SKEEQVKR----- 947
Query: 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD--- 706
L +++ P++LRR+K DV +P K+E ++ L+ Q+ Y+ F+ + E +
Sbjct: 948 --LHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQKKFYK-FILTKNYEALNSKSG 1004
Query: 707 GSRNSLYGIDV-MRKICNHPDLLEREQSCQIPDYGN-------PERSEKMKVVAQVLKVW 758
G SL I + ++K CNHP L G + + K+ +++++LK
Sbjct: 1005 GGSCSLINIMMDLKKCCNHPYLFPSAAEEATTAAGGLYEINSLTKAAGKLVLLSKMLKQL 1064
Query: 759 KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIF 817
K Q HRVL+F+Q +MLDILE FL Y+Y R+DG R ID +N + F+F
Sbjct: 1065 KAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVF 1124
Query: 818 ILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEE 877
+L+T+ GGLG NL A+ VII+D DWNP D+QA RA RIGQ V +YR +TR ++EE
Sbjct: 1125 LLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEE 1184
Query: 878 KVYHRQIYKHFLTNKILK 895
+V K LT+ +++
Sbjct: 1185 RVTQVAKRKMMLTHLVVR 1202
Score = 145 (56.1 bits), Expect = 2.1e-53, Sum P(4) = 2.1e-53
Identities = 32/77 (41%), Positives = 44/77 (57%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYK-PSIVVCPVT 460
L YQ G+ WL Q I+ DEMGLGKTIQ ++FL +L+ + P +V P++
Sbjct: 730 LHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLS 789
Query: 461 LLRQWKREAEKWYPSFH 477
L W+RE E W P F+
Sbjct: 790 TLVNWEREFELWAPDFY 806
Score = 56 (24.8 bits), Expect = 4.3e-53, Sum P(5) = 4.3e-53
Identities = 29/120 (24%), Positives = 51/120 (42%)
Query: 90 VSTKEDNDIDDGDSTEQDGREDEKSAVQAS-PNDMTLQHALTAD---------RLKSLKK 139
++++E+ND D E++ +ED A + S +D L+ D R K KK
Sbjct: 1 MASEEEND--DNFQEEEEAQEDNAPAAELSNDSDAPLKPNNDEDDDYDPEDSRRKKKGKK 58
Query: 140 TKAQLVKELSHFPKGITSKGIEHDK-FIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTVS 198
K + +E K E D F+Q + E+ K +K K +K++++ S
Sbjct: 59 RKTRKGEEKGRKKKKRKKNESEEDSDFVQHDEEVEYPSTSKRGRKRKEEKQAAKEKESAS 118
Score = 53 (23.7 bits), Expect = 0.00015, Sum P(5) = 0.00015
Identities = 13/39 (33%), Positives = 18/39 (46%)
Query: 899 QRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVN 937
Q++F+K K+ LN GGS NI L + N
Sbjct: 984 QKKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKCCN 1022
Score = 51 (23.0 bits), Expect = 2.1e-53, Sum P(4) = 2.1e-53
Identities = 32/168 (19%), Positives = 63/168 (37%)
Query: 156 TSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTVSVXXXXXXXXXXXXXXXG 215
+S+ + D ++ V+EE + + K+ ++ R K+ + S
Sbjct: 224 SSRNEKPDDIYEEAVEEEEEEEEEEKKPRRKRSGRGKKGRRPSGKVPTLKIKLLGKRKRD 283
Query: 216 FVETKRDELVRKGILTPFHKLKGFERCIQQPGPSNKQNVPDEQEARSNDPFSASVDRALR 275
+ ++D G L+ FER +Q+ S DE+EA P S+ D +
Sbjct: 284 SSDEEQDA---SGASERDSDLE-FERMLQKSDDS-----ADEKEA----PVSSKADNSAP 330
Query: 276 MMSEAAQARPSTKLLDPESLPKLDGPTRPFQRLKTPFRMPQSEESEVE 323
+ P + ++ K+ + +LK P+ E+ E E
Sbjct: 331 AAQDDGSGAPVVR---KKAKTKIGNKFKKKNKLKKTKNFPEGEDGEHE 375
Score = 50 (22.7 bits), Expect = 3.9e-43, Sum P(3) = 3.9e-43
Identities = 10/39 (25%), Positives = 23/39 (58%)
Query: 486 QDLGFRKKRAKSSDTDNDGEG-SHDSDYEGNLSSRNPKK 523
++ G +KK+ K ++++ D + HD + E +S+ +K
Sbjct: 65 EEKGRKKKKRKKNESEEDSDFVQHDEEVEYPSTSKRGRK 103
Score = 48 (22.0 bits), Expect = 7.2e-44, Sum P(4) = 7.2e-44
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 488 LGFRKKRAKSSDTDNDGEGSHDSDYE 513
LG RK+ + + D G DSD E
Sbjct: 277 LGKRKRDSSDEEQDASGASERDSDLE 302
Score = 46 (21.3 bits), Expect = 4.6e-52, Sum P(5) = 4.6e-52
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 152 PKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTVSV 199
P I + +E + ++ +EE +P+RK K G+ S + T+ +
Sbjct: 230 PDDIYEEAVEEE---EEEEEEEKKPRRKRSGRGKKGRRPSGKVPTLKI 274
Score = 38 (18.4 bits), Expect = 2.1e-53, Sum P(4) = 2.1e-53
Identities = 27/97 (27%), Positives = 41/97 (42%)
Query: 1113 SSELLARIRGNQE-NAVGAGLERQFE--VASSSANVARFADT--RTSRSSKNASDVQPEI 1167
S E LA GN+ NAV + Q E ++ ++V+R T R ++ + I
Sbjct: 1866 SKESLA---GNKPANAVLHKVLNQLEELLSDMKSDVSRLPATLARIPPVAQRLQMSERSI 1922
Query: 1168 LIRQICTFMQQRGGSSNSACIVEHFKDRVPSKDLPLF 1204
L R T G +SN+A ++ F LP F
Sbjct: 1923 LSRLAAT----AGNASNAAQLMAQFPAGFQGTTLPAF 1955
Score = 37 (18.1 bits), Expect = 4.3e-53, Sum P(5) = 4.3e-53
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 293 ESLPKLDGPTRPFQRLKTPFRMPQSEESEV 322
ESL + D + QR K M ++++EV
Sbjct: 568 ESLDEADTRYKRIQRHKDKVGMKANDDAEV 597
>UNIPROTKB|F1RWW3 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070933 "histone H4 deacetylation" evidence=IEA]
[GO:0070932 "histone H3 deacetylation" evidence=IEA] [GO:0051304
"chromosome separation" evidence=IEA] [GO:0043596 "nuclear
replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 OMA:KNQRGIQ
EMBL:CU951443 Ensembl:ENSSSCT00000010066 Uniprot:F1RWW3
Length = 1029
Score = 328 (120.5 bits), Expect = 2.7e-53, Sum P(5) = 2.7e-53
Identities = 66/135 (48%), Positives = 91/135 (67%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K +V+ +L K +G RV+LF+Q MLDILE L + Y R+DG T + +R+ L
Sbjct: 856 SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHL 915
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
IDE+N D+F+F+L+TK GGLG NLT AN VI+ D D NP D QA +R R+GQ ++V
Sbjct: 916 IDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 975
Query: 865 TVYRLITRGTIEEKV 879
V +LI++GTIEE +
Sbjct: 976 LVIKLISQGTIEESM 990
Score = 193 (73.0 bits), Expect = 2.7e-53, Sum P(5) = 2.7e-53
Identities = 58/206 (28%), Positives = 106/206 (51%)
Query: 535 ESGLLITTYE-QLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVH---R 588
E +++TTY + ++ L ++ YA+ DEGH ++N S+ + L T++ R
Sbjct: 599 EYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMG---SIRYQHLMTINANNR 655
Query: 589 IIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRC 648
+++TG P+QN L EL SL +FV P + +E + +A + R
Sbjct: 656 LLLTGTPVQNNLLELMSLLNFVMPH---MFSSSTSEIRRMFS-SKTKSADEQSIYEKERI 711
Query: 649 AVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGS 708
A + +I P++LRR+K +V QLP K + + C+++E+Q +Y + +++ ++
Sbjct: 712 AHA-KQIIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLF--NRLKKSINNM 768
Query: 709 RNSLYGIDVM---RKICNHPDLLERE 731
+ +VM RK+ NHP LL R+
Sbjct: 769 EKNTEMCNVMMQLRKMANHP-LLHRQ 793
Score = 180 (68.4 bits), Expect = 2.7e-53, Sum P(5) = 2.7e-53
Identities = 40/102 (39%), Positives = 56/102 (54%)
Query: 390 GGLKIPE-SIFN---NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH 445
GG I + SI N +L YQKVG+ WL +H GI+ DEMGLGKTIQ ++FL L+
Sbjct: 484 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 543
Query: 446 FSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQD 487
P ++V P + + W RE W P+ V + S ++
Sbjct: 544 QEGNKGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEE 585
Score = 48 (22.0 bits), Expect = 2.7e-53, Sum P(5) = 2.7e-53
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 51 DKSESIDP--SSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDD 100
D + I P SST QEK +NK + + L V+ + +ND+ +
Sbjct: 98 DSEDIISPNCSSTVQEKKFNKDTVIIVSEPSEDEESQGLPTVAGRNNNDLSE 149
Score = 38 (18.4 bits), Expect = 2.8e-23, Sum P(4) = 2.8e-23
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 266 FSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRPF--QRLK 309
FS+S RM S ++ + + E + +PF +R+K
Sbjct: 682 FSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVK 727
Score = 37 (18.1 bits), Expect = 2.7e-53, Sum P(5) = 2.7e-53
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 149 SHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQK 195
S FP G K + Q+ K + K K K + KP +K++K
Sbjct: 307 SEFPNG---KEVSSRS--QNYPKNAAKTKLKQKCSMKPQNGFNKKRK 348
>UNIPROTKB|E2RG62 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070933 "histone H4 deacetylation"
evidence=IEA] [GO:0070932 "histone H3 deacetylation" evidence=IEA]
[GO:0051304 "chromosome separation" evidence=IEA] [GO:0043596
"nuclear replication fork" evidence=IEA] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=IEA] [GO:0035861 "site of
double-strand break" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000792 "heterochromatin" evidence=IEA]
[GO:0000729 "DNA double-strand break processing" evidence=IEA]
[GO:0000018 "regulation of DNA recombination" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000018
GeneTree:ENSGT00630000089890 GO:GO:0051304 EMBL:AAEX03016768
EMBL:AAEX03016769 Ensembl:ENSCAFT00000015951 Uniprot:E2RG62
Length = 1026
Score = 328 (120.5 bits), Expect = 4.2e-53, Sum P(5) = 4.2e-53
Identities = 66/135 (48%), Positives = 91/135 (67%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K +V+ +L K +G RV+LF+Q MLDILE L + Y R+DG T + +R+ L
Sbjct: 853 SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHL 912
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
IDE+N D+F+F+L+TK GGLG NLT AN VI+ D D NP D QA +R R+GQ ++V
Sbjct: 913 IDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 972
Query: 865 TVYRLITRGTIEEKV 879
V +LI++GTIEE +
Sbjct: 973 LVIKLISQGTIEESM 987
Score = 195 (73.7 bits), Expect = 4.2e-53, Sum P(5) = 4.2e-53
Identities = 59/206 (28%), Positives = 106/206 (51%)
Query: 535 ESGLLITTYE-QLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVH---R 588
E +++TTY + ++ L ++ YA+ DEGH ++N S+ + L T++ R
Sbjct: 596 EYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMG---SIRYQHLMTINANNR 652
Query: 589 IIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRC 648
+++TG P+QN L EL SL +FV P + +E + +A + R
Sbjct: 653 LLLTGTPVQNNLLELMSLLNFVMPH---MFSSSTSEIRRMFS-SKTKSADEQSIYEKERI 708
Query: 649 AVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGS 708
A + +I P++LRR+K +V QLP K + + C+++E+Q +Y + +++ ++
Sbjct: 709 AHA-KQIIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLF--NRLKKSINNI 765
Query: 709 RNSLYGIDVM---RKICNHPDLLERE 731
S +VM RK+ NHP LL R+
Sbjct: 766 EKSTEMCNVMMQLRKMANHP-LLHRQ 790
Score = 180 (68.4 bits), Expect = 4.2e-53, Sum P(5) = 4.2e-53
Identities = 40/102 (39%), Positives = 56/102 (54%)
Query: 390 GGLKIPE-SIFN---NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH 445
GG I + SI N +L YQKVG+ WL +H GI+ DEMGLGKTIQ ++FL L+
Sbjct: 481 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540
Query: 446 FSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQD 487
P ++V P + + W RE W P+ V + S ++
Sbjct: 541 QEGNKGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEE 582
Score = 44 (20.5 bits), Expect = 4.2e-53, Sum P(5) = 4.2e-53
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 51 DKSESIDP--SSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDD 100
D + + P SST QEK +NK + + L +S + ++DI +
Sbjct: 95 DSEDIVSPNCSSTVQEKKFNKDTVIIVSEPSEDEESQGLPTMSGRNNDDISE 146
Score = 38 (18.4 bits), Expect = 6.9e-23, Sum P(4) = 6.9e-23
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 266 FSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRPF--QRLK 309
FS+S RM S ++ + + E + +PF +R+K
Sbjct: 679 FSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVK 724
Score = 37 (18.1 bits), Expect = 4.2e-53, Sum P(5) = 4.2e-53
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 149 SHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQK 195
S FP G K E Q+ K + K K K + KP +K++K
Sbjct: 304 SEFPNG---K--EASSRSQNYPKNAAKTKLKQKCSMKPQNGFNKKRK 345
Score = 37 (18.1 bits), Expect = 4.7e-53, Sum P(4) = 4.7e-53
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 245 QPGPSNKQNVPDEQE 259
QPGPS+ ++ E+E
Sbjct: 29 QPGPSSPISLSAEEE 43
>UNIPROTKB|J9NX47 [details] [associations]
symbol:SMARCAD1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000330 InterPro:IPR001650
InterPro:IPR003892 InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271
PROSITE:PS51140 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 SUPFAM:SSF46934 GeneTree:ENSGT00630000089890
EMBL:AAEX03016768 EMBL:AAEX03016769 Ensembl:ENSCAFT00000044961
Uniprot:J9NX47
Length = 1026
Score = 328 (120.5 bits), Expect = 4.2e-53, Sum P(5) = 4.2e-53
Identities = 66/135 (48%), Positives = 91/135 (67%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K +V+ +L K +G RV+LF+Q MLDILE L + Y R+DG T + +R+ L
Sbjct: 853 SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHL 912
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
IDE+N D+F+F+L+TK GGLG NLT AN VI+ D D NP D QA +R R+GQ ++V
Sbjct: 913 IDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 972
Query: 865 TVYRLITRGTIEEKV 879
V +LI++GTIEE +
Sbjct: 973 LVIKLISQGTIEESM 987
Score = 195 (73.7 bits), Expect = 4.2e-53, Sum P(5) = 4.2e-53
Identities = 59/206 (28%), Positives = 106/206 (51%)
Query: 535 ESGLLITTYE-QLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVH---R 588
E +++TTY + ++ L ++ YA+ DEGH ++N S+ + L T++ R
Sbjct: 596 EYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMG---SIRYQHLMTINANNR 652
Query: 589 IIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRC 648
+++TG P+QN L EL SL +FV P + +E + +A + R
Sbjct: 653 LLLTGTPVQNNLLELMSLLNFVMPH---MFSSSTSEIRRMFS-SKTKSADEQSIYEKERI 708
Query: 649 AVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGS 708
A + +I P++LRR+K +V QLP K + + C+++E+Q +Y + +++ ++
Sbjct: 709 AHA-KQIIKPFILRRVKEEVLKQLPPKKDQIELCAMSEKQEQLYLGLF--NRLKKSINNI 765
Query: 709 RNSLYGIDVM---RKICNHPDLLERE 731
S +VM RK+ NHP LL R+
Sbjct: 766 EKSTEMCNVMMQLRKMANHP-LLHRQ 790
Score = 180 (68.4 bits), Expect = 4.2e-53, Sum P(5) = 4.2e-53
Identities = 40/102 (39%), Positives = 56/102 (54%)
Query: 390 GGLKIPE-SIFN---NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH 445
GG I + SI N +L YQKVG+ WL +H GI+ DEMGLGKTIQ ++FL L+
Sbjct: 481 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540
Query: 446 FSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQD 487
P ++V P + + W RE W P+ V + S ++
Sbjct: 541 QEGNKGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEE 582
Score = 44 (20.5 bits), Expect = 4.2e-53, Sum P(5) = 4.2e-53
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 51 DKSESIDP--SSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDD 100
D + + P SST QEK +NK + + L +S + ++DI +
Sbjct: 93 DSEDIVSPNCSSTVQEKKFNKDTVIIVSEPSEDEESQGLPTMSGRNNDDISE 144
Score = 38 (18.4 bits), Expect = 6.9e-23, Sum P(4) = 6.9e-23
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 266 FSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRPF--QRLK 309
FS+S RM S ++ + + E + +PF +R+K
Sbjct: 679 FSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVK 724
Score = 37 (18.1 bits), Expect = 4.2e-53, Sum P(5) = 4.2e-53
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 149 SHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQK 195
S FP G K E Q+ K + K K K + KP +K++K
Sbjct: 304 SEFPNG---K--EASSRSQNYPKNAAKTKLKQKCSMKPQNGFNKKRK 345
Score = 37 (18.1 bits), Expect = 4.7e-53, Sum P(4) = 4.7e-53
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 245 QPGPSNKQNVPDEQE 259
QPGPS+ ++ E+E
Sbjct: 27 QPGPSSPISLSAEEE 41
>UNIPROTKB|Q9H4L7 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9606 "Homo sapiens" [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0009117 "nucleotide metabolic process" evidence=NAS]
[GO:0003676 "nucleic acid binding" evidence=NAS] [GO:0016363
"nuclear matrix" evidence=NAS] [GO:0051260 "protein
homooligomerization" evidence=NAS] [GO:0000018 "regulation of DNA
recombination" evidence=IEP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0016568 "chromatin
modification" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0000729
"DNA double-strand break processing" evidence=IMP] [GO:0043044
"ATP-dependent chromatin remodeling" evidence=IMP] [GO:0035861
"site of double-strand break" evidence=IDA] [GO:0043596 "nuclear
replication fork" evidence=IDA] [GO:0006338 "chromatin remodeling"
evidence=NAS] [GO:0051304 "chromosome separation" evidence=IMP]
[GO:0070932 "histone H3 deacetylation" evidence=IMP] [GO:0070933
"histone H4 deacetylation" evidence=IMP] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR003892 InterPro:IPR009060
Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0045893 GO:GO:0003677
GO:GO:0009117 GO:GO:0051260 GO:GO:0043596 GO:GO:0004386
GO:GO:0016363 eggNOG:COG0553 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934 GO:GO:0000792
GO:GO:0070932 GO:GO:0070933 GO:GO:0000729 GO:GO:0000018
HOGENOM:HOG000172362 GO:GO:0035861 KO:K14439 GO:GO:0051304
OMA:KNQRGIQ EMBL:AY008271 EMBL:AB032948 EMBL:AK023990 EMBL:AK027490
EMBL:AK301668 EMBL:AC096746 EMBL:BC017953 EMBL:BC045534
EMBL:AL359929 EMBL:AL512768 IPI:IPI00008422 IPI:IPI00220119
RefSeq:NP_001121901.1 RefSeq:NP_001121902.1 RefSeq:NP_001241878.1
RefSeq:NP_064544.2 UniGene:Hs.410406 ProteinModelPortal:Q9H4L7
SMR:Q9H4L7 STRING:Q9H4L7 PhosphoSite:Q9H4L7 DMDM:306526240
PaxDb:Q9H4L7 PRIDE:Q9H4L7 DNASU:56916 Ensembl:ENST00000354268
Ensembl:ENST00000359052 Ensembl:ENST00000457823
Ensembl:ENST00000509418 GeneID:56916 KEGG:hsa:56916 UCSC:uc003htb.4
UCSC:uc003htc.4 CTD:56916 GeneCards:GC04P095128 H-InvDB:HIX0004380
HGNC:HGNC:18398 HPA:HPA016737 MIM:136000 MIM:612761
neXtProt:NX_Q9H4L7 Orphanet:289465 PharmGKB:PA134954731
HOVERGEN:HBG055804 ChiTaRS:SMARCAD1 GenomeRNAi:56916 NextBio:62407
ArrayExpress:Q9H4L7 Bgee:Q9H4L7 CleanEx:HS_SMARCAD1
Genevestigator:Q9H4L7 GermOnline:ENSG00000163104 Uniprot:Q9H4L7
Length = 1026
Score = 328 (120.5 bits), Expect = 5.3e-53, Sum P(5) = 5.3e-53
Identities = 66/135 (48%), Positives = 91/135 (67%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K +V+ +L K +G RV+LF+Q MLDILE L + Y R+DG T + +R+ L
Sbjct: 853 SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHL 912
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
IDE+N D+F+F+L+TK GGLG NLT AN VI+ D D NP D QA +R R+GQ ++V
Sbjct: 913 IDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 972
Query: 865 TVYRLITRGTIEEKV 879
V +LI++GTIEE +
Sbjct: 973 LVIKLISQGTIEESM 987
Score = 189 (71.6 bits), Expect = 5.3e-53, Sum P(5) = 5.3e-53
Identities = 57/203 (28%), Positives = 105/203 (51%)
Query: 538 LLITTYE-QLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVH---RIIM 591
+++TTY + ++ L ++ YA+ DEGH ++N S+ + L T++ R+++
Sbjct: 599 VIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMG---SIRYQHLMTINANNRLLL 655
Query: 592 TGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVV 651
TG P+QN L EL SL +FV P + +E + +A + R A
Sbjct: 656 TGTPVQNNLLELMSLLNFVMPH---MFSSSTSEIRRMFS-SKTKSADEQSIYEKERIAHA 711
Query: 652 LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNS 711
+ +I P++LRR+K +V QLP K + + C+++E+Q +Y + +++ ++ +
Sbjct: 712 -KQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYLGLF--NRLKKSINNLEKN 768
Query: 712 LYGIDVM---RKICNHPDLLERE 731
+VM RK+ NHP LL R+
Sbjct: 769 TEMCNVMMQLRKMANHP-LLHRQ 790
Score = 180 (68.4 bits), Expect = 5.3e-53, Sum P(5) = 5.3e-53
Identities = 40/102 (39%), Positives = 56/102 (54%)
Query: 390 GGLKIPE-SIFN---NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH 445
GG I + SI N +L YQKVG+ WL +H GI+ DEMGLGKTIQ ++FL L+
Sbjct: 481 GGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 540
Query: 446 FSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQD 487
P ++V P + + W RE W P+ V + S ++
Sbjct: 541 QEGNNGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEE 582
Score = 45 (20.9 bits), Expect = 5.3e-53, Sum P(5) = 5.3e-53
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 110 EDEKSA---VQASPNDMTLQHALTADRLKSLKKTKAQLVKELSHFPK 153
EDE+S A ND + L+ LK K Q +KEL FP+
Sbjct: 128 EDEESQGLPTMARRND-DISELEDLSELEDLKDAKLQTLKEL--FPQ 171
Score = 43 (20.2 bits), Expect = 8.6e-53, Sum P(5) = 8.6e-53
Identities = 22/92 (23%), Positives = 40/92 (43%)
Query: 51 DKSESIDP--SSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDIDDGDSTEQDG 108
D + + P S+T QEK +NK + + L ++ + D DI + + +
Sbjct: 97 DSEDVVSPNCSNTVQEKTFNKDTVIIVSEPSEDEESQGLPTMARRND-DISELEDLSE-- 153
Query: 109 REDEKSAVQASPNDMTLQHALTADRLKSLKKT 140
ED K A + ++ Q + D LK ++ T
Sbjct: 154 LEDLKDAKLQTLKELFPQRS-DNDLLKLIEST 184
Score = 41 (19.5 bits), Expect = 5.3e-53, Sum P(5) = 5.3e-53
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 350 TRLEENEDSRDSLDMSS 366
TRL+ E+S +S + SS
Sbjct: 231 TRLDHGEESNESAESSS 247
Score = 38 (18.4 bits), Expect = 2.8e-52, Sum P(5) = 2.8e-52
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 245 QPGPSNKQNVPDEQE------ARSNDPFS 267
QPGPS+ ++ E+E +R+N P S
Sbjct: 29 QPGPSSPISLSAEEENAEGEVSRANTPDS 57
Score = 38 (18.4 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 266 FSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRPF--QRLK 309
FS+S RM S ++ + + E + +PF +R+K
Sbjct: 679 FSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVK 724
>UNIPROTKB|Q71Z25 [details] [associations]
symbol:LMOf2365_1665 "Helicase, Snf2 family" species:265669
"Listeria monocytogenes serotype 4b str. F2365" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000330
InterPro:IPR001650 InterPro:IPR007527 Pfam:PF00176 Pfam:PF00271
PROSITE:PS50966 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0008270 GO:GO:0004386 EMBL:AE017262
GenomeReviews:AE017262_GR eggNOG:COG0553 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 RefSeq:YP_014262.1
ProteinModelPortal:Q71Z25 STRING:Q71Z25 GeneID:2798638
KEGG:lmf:LMOf2365_1665 PATRIC:20324567 HOGENOM:HOG000026038
OMA:NTLNAEM ProtClustDB:CLSK629151 InterPro:IPR013663 Pfam:PF08455
Uniprot:Q71Z25
Length = 1072
Score = 387 (141.3 bits), Expect = 5.4e-53, Sum P(3) = 5.4e-53
Identities = 95/272 (34%), Positives = 155/272 (56%)
Query: 655 LIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVE-QILDGSRNS-- 711
+I P+LLRR+K DV +LP K E L+ LT+EQ+ +Y A+L + + + +G+ +
Sbjct: 809 MIRPFLLRRLKQDVVKELPDKIETNLYSELTDEQKTIYLAYLEKIQADLEASNGNASEER 868
Query: 712 ---LYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLF 768
L G+ +R+IC P L + +Y S K+ + ++ ++ G R+LLF
Sbjct: 869 IKLLAGLTRLRQICCDPSLF-------VENYQG--ESGKLLQLFDTIQTARENGKRILLF 919
Query: 769 AQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGT 828
+Q ML I+ L G MDG TP K R+ +++ +N + IF+++ K GG G
Sbjct: 920 SQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGEND-IFLISLKAGGTGL 978
Query: 829 NLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHF 888
NL GA+ VI++D WNP+ + QA RA RIGQK+ V V+R+IT+GTIEE+++ Q K
Sbjct: 979 NLVGADTVILYDLWWNPAVEEQATGRAHRIGQKRVVQVFRMITKGTIEERIFDLQKKKQA 1038
Query: 889 LTNKILKNPQQRRFFK--ARNMKDLFTLNDDG 918
L +++++ P ++ K +K + L D+G
Sbjct: 1039 LVDELIQ-PGEQMLGKLSTEEIKQILQL-DNG 1068
Score = 192 (72.6 bits), Expect = 5.4e-53, Sum P(3) = 5.4e-53
Identities = 38/99 (38%), Positives = 58/99 (58%)
Query: 389 EGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA-LHFS 447
E +P+ + L DYQ G +W+ L GGI+ D+MGLGKT+Q +SFL + L +
Sbjct: 603 EDSFALPKGLKAELRDYQLTGFEWMKSLAKYNLGGILADDMGLGKTVQTISFLASELEDN 662
Query: 448 NMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQ 486
KP +++ P +LL W+ E EK+ P+ V +LH + Q
Sbjct: 663 PNLKPVLIITPASLLYNWQSELEKFAPAIPVTVLHGTKQ 701
Score = 112 (44.5 bits), Expect = 5.4e-53, Sum P(3) = 5.4e-53
Identities = 21/74 (28%), Positives = 39/74 (52%)
Query: 540 ITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNK 599
+ +Y LR DV + ++DE I+N + + S + L+ H ++G P++N
Sbjct: 717 LISYPSLRQDIVHFADVAFSSVIIDESQAIKNYHTKASQAVRALKRNHVFALSGTPLENS 776
Query: 600 LSELWSLFDFVFPG 613
+ ELW++F + PG
Sbjct: 777 IDELWAIFQTLMPG 790
Score = 41 (19.5 bits), Expect = 3.0e-37, Sum P(3) = 3.0e-37
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 529 NRVLRSESGLLITTYEQ 545
NR+L ES L++ ++Q
Sbjct: 96 NRILTQESNTLLSLFQQ 112
>UNIPROTKB|E1B7X9 [details] [associations]
symbol:SMARCAD1 "SWI/SNF-related matrix-associated
actin-dependent regulator of chromatin subfamily A containing
DEAD/H box 1" species:9913 "Bos taurus" [GO:0035861 "site of
double-strand break" evidence=ISS] [GO:0043044 "ATP-dependent
chromatin remodeling" evidence=ISS] [GO:0000729 "DNA double-strand
break processing" evidence=ISS] [GO:0070933 "histone H4
deacetylation" evidence=ISS] [GO:0070932 "histone H3 deacetylation"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0000792
"heterochromatin" evidence=ISS] [GO:0051304 "chromosome separation"
evidence=ISS] [GO:0043596 "nuclear replication fork" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000018 "regulation of
DNA recombination" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
InterPro:IPR000330 InterPro:IPR001650 InterPro:IPR003892
InterPro:IPR009060 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51140
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0043596 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0043044 SUPFAM:SSF46934
GO:GO:0000792 GO:GO:0070932 GO:GO:0070933 GO:GO:0000729
GO:GO:0000018 GO:GO:0035861 GeneTree:ENSGT00630000089890
GO:GO:0051304 EMBL:DAAA02016925 EMBL:DAAA02016926 IPI:IPI00826348
UniGene:Bt.77636 Ensembl:ENSBTAT00000047936 OMA:KNQRGIQ
Uniprot:E1B7X9
Length = 1028
Score = 325 (119.5 bits), Expect = 7.3e-53, Sum P(5) = 7.3e-53
Identities = 66/135 (48%), Positives = 90/135 (66%)
Query: 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMAL 804
S K +V+ +L K +G RV+LF+Q MLDILE L + Y R+DG T + +R+ L
Sbjct: 855 SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHL 914
Query: 805 IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
IDE+N D+F+F+L+TK GGLG NLT AN VI+ D D NP D QA +R R+GQ ++V
Sbjct: 915 IDEFNTDMDIFVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEV 974
Query: 865 TVYRLITRGTIEEKV 879
V +LI +GTIEE +
Sbjct: 975 LVIKLIGQGTIEESM 989
Score = 194 (73.4 bits), Expect = 7.3e-53, Sum P(5) = 7.3e-53
Identities = 58/208 (27%), Positives = 107/208 (51%)
Query: 535 ESGLLITTYE-QLRLLGEKLL--DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVH---R 588
E +++TTY + ++ L ++ YA+ DEGH ++N S+ + L T++ R
Sbjct: 598 EYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMG---SIRYQHLMTINANNR 654
Query: 589 IIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRC 648
+++TG P+QN L EL SL +FV P +F + + I + P + Y
Sbjct: 655 LLLTGTPVQNNLLELMSLLNFVMPH------MFSSSTS-EIRRMFSSKTKPADEQSIYEK 707
Query: 649 AVVL--RDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD 706
+ + +I P++LRR+K +V QLP K + + C+++E+Q +Y + +++ ++
Sbjct: 708 ERIAHAKQIIKPFILRRVKEEVLKQLPPKKDRIELCAMSEKQEQLYMNLF--NRLKKSIN 765
Query: 707 GSRNSLYGIDVM---RKICNHPDLLERE 731
+ +VM RK+ NHP LL R+
Sbjct: 766 NMEKNTEMCNVMMQLRKMANHP-LLHRQ 792
Score = 175 (66.7 bits), Expect = 7.3e-53, Sum P(5) = 7.3e-53
Identities = 39/102 (38%), Positives = 55/102 (53%)
Query: 390 GGLKIPE-SIFN---NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH 445
GG + SI N +L YQKVG+ WL +H GI+ DEMGLGKTIQ ++FL L+
Sbjct: 483 GGWNTEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTIQAIAFLAYLY 542
Query: 446 FSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQD 487
P ++V P + + W RE W P+ V + S ++
Sbjct: 543 QEGNKGPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEE 584
Score = 51 (23.0 bits), Expect = 7.3e-53, Sum P(5) = 7.3e-53
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 51 DKSESIDP--SSTSQEKLYNKLRAVEFEIGAVASTVDHLRRVSTKEDNDI 98
D + + P SST QEK +NK + + L ++T+ +NDI
Sbjct: 97 DSEDVVSPNCSSTVQEKKFNKDTVIIVSEPSEDEESQGLPTMATRNNNDI 146
Score = 37 (18.1 bits), Expect = 7.3e-53, Sum P(5) = 7.3e-53
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 149 SHFPKGITSKGIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQK 195
S FP G K + Q+ K + K K K + KP +K++K
Sbjct: 306 SEFPNG---KEVSSRS--QNYPKNAAKTKLKQKCSMKPQNGFNKKRK 347
Score = 37 (18.1 bits), Expect = 4.3e-52, Sum P(4) = 4.3e-52
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 245 QPGPSNKQNVPDEQE 259
QPGPS+ ++ E+E
Sbjct: 29 QPGPSSPISLSAEEE 43
>UNIPROTKB|O53499 [details] [associations]
symbol:helZ "PROBABLE HELICASE HELZ" species:83332
"Mycobacterium tuberculosis H37Rv" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] InterPro:IPR000330
InterPro:IPR001650 Pfam:PF00176 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005886 GO:GO:0005524
GO:GO:0005618 GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842578
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
PIR:B70841 RefSeq:NP_216617.1 ProteinModelPortal:O53499 SMR:O53499
EnsemblBacteria:EBMYCT00000002428 GeneID:888635 KEGG:mtu:Rv2101
PATRIC:18153236 TubercuList:Rv2101 HOGENOM:HOG000099451 OMA:PYQERGL
ProtClustDB:CLSK872005 InterPro:IPR022138 Pfam:PF12419
Uniprot:O53499
Length = 1013
Score = 491 (177.9 bits), Expect = 2.2e-52, Sum P(2) = 2.2e-52
Identities = 125/395 (31%), Positives = 211/395 (53%)
Query: 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597
L+++TY ++L + EW VLDE ++N + + ++L+ HR+ +TG P++
Sbjct: 636 LVVSTYTTATRDIDELAEYEWNRVVLDEAQAVKNSLSRAAKAVRRLRAAHRVALTGTPME 695
Query: 598 NKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYAN-ASPLQVSTAYRCAVVLRDLI 656
N+L+ELWS+ DF+ PG LG F +A+PI G+ A L+ ST
Sbjct: 696 NRLAELWSIMDFLNPGLLGSSERFRTRYAIPIERHGHTEPAERLRASTR----------- 744
Query: 657 MPYLLRRMKAD--VNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS--SEVEQI--LDGSRN 710
PY+LRR+K D + LP+K E +C LT EQ ++Y+A +A ++E ++ N
Sbjct: 745 -PYILRRLKTDPAIIDDLPEKIEIKQYCQLTTEQASLYQAVVADMMEKIENTEGIERRGN 803
Query: 711 SLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQ 770
L + ++++CNHP L ++S P G RS K+ + ++L+ +G RVL F Q
Sbjct: 804 VLAAMAKLKQVCNHPAQLLHDRS---P-VGR--RSGKVIRLEEILEEILAEGDRVLCFTQ 857
Query: 771 TQQMLDILESFLIA----SGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGL 826
+ ++L L A + + + G TP K+R ++ + + IF+L+ K GG
Sbjct: 858 FTEFAELLVPHLAARFGRAARDIAYLHGGTPRKRRDEMVARFQSGDGPPIFLLSLKAGGT 917
Query: 827 GTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYK 886
G NLT AN V+ D WNP+ + QA +RA+RIGQ++ V V + I GT+EEK+ K
Sbjct: 918 GLNLTAANHVVHLDRWWNPAVENQATDRAFRIGQRRTVQVRKFICTGTLEEKIDEMIEEK 977
Query: 887 HFLTNKILKNPQQ-RRFFKARNMKDLFTLNDDGNG 920
L + ++ + + R+++++F L++ G
Sbjct: 978 KALADLVVTDGEGWLTELSTRDLREVFALSEGAVG 1012
Score = 139 (54.0 bits), Expect = 2.2e-52, Sum P(2) = 2.2e-52
Identities = 31/96 (32%), Positives = 53/96 (55%)
Query: 395 PESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSF--LGAL--HFSNMY 450
P+ L YQ+ G+ WL L G + D+MGLGKT+Q+L+ L ++ H
Sbjct: 526 PDGFTATLRPYQQRGLAWLAFLSSLGLGSCLADDMGLGKTVQLLALETLESVQRHQDRGV 585
Query: 451 KPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQ 486
P++++CP++L+ W +EA ++ P+ V H A+
Sbjct: 586 GPTLLLCPMSLVGNWPQEAARFAPNLRVYAHHGGAR 621
WARNING: HSPs involving 318 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.374 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1231 1150 0.00092 123 3 11 23 0.44 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 568
No. of states in DFA: 627 (67 KB)
Total size of DFA: 489 KB (2228 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 116.28u 0.14s 116.42t Elapsed: 00:00:06
Total cpu time: 116.40u 0.14s 116.54t Elapsed: 00:00:06
Start: Fri May 10 10:46:10 2013 End: Fri May 10 10:46:16 2013
WARNINGS ISSUED: 2