BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044798
(1231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z3I|X Chain X, Structure Of The Swi2SNF2 CHROMATIN REMODELING DOMAIN OF
EUKARYOTIC Rad54
Length = 644
Score = 262 bits (670), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 178/545 (32%), Positives = 273/545 (50%), Gaps = 64/545 (11%)
Query: 405 YQKVGVQWLWELHCQR-----AGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSI---- 454
+Q+ GV++LW+ R G I+ DEMGLGKT+Q ++ + L S KP I
Sbjct: 59 HQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVI 118
Query: 455 VVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEG 514
VV P +L+R W E KW LG R + D + DS
Sbjct: 119 VVSPSSLVRNWYNEVGKW---------------LG---GRVQPVAIDGGSKDEIDSKLVN 160
Query: 515 NLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNA 574
+S + +R + +LI +YE RL E L + G + DEGHR++N +
Sbjct: 161 FISQQG-----------MRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDN 209
Query: 575 EISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGY 634
+ L + R++++G PIQN L E +SL FV G LG F+ F +PI G
Sbjct: 210 QTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRD 269
Query: 635 ANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRA 694
A+AS + + L ++ L+RR ++ LP K E V+ C+LT Q+ +Y+
Sbjct: 270 ADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKL 329
Query: 695 FLASSE-VEQILDGSRNSLYGIDVM--RKICNHPDLLEREQSCQIPDYG----------- 740
FL ++ VE + G + + +K+CNHP L+ + C + G
Sbjct: 330 FLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIY--EKCLTGEEGFDGALDLFPQN 387
Query: 741 ------NPERSEKMKVVAQVLKVWKDQ-GHRVLLFAQTQQMLDILESFLIASGYEYRRMD 793
P+ S KM V+ +L + + +V+L + Q LD+ E Y Y R+D
Sbjct: 388 YSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLD 447
Query: 794 GLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQAR 852
G +K+R +++ +NN SS FIF+L++K GG G NL GANR+++FDPDWNP+ D QA
Sbjct: 448 GTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAM 507
Query: 853 ERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKARNMKDL 911
R WR GQK+ +YRL++ GTIEEK+ RQ +K L++ ++ Q R F +++L
Sbjct: 508 ARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELREL 567
Query: 912 FTLND 916
F+LN+
Sbjct: 568 FSLNE 572
>pdb|3MWY|W Chain W, Crystal Structure Of The Chromodomain-atpase Portion Of
The Yeast Chd1 Chromatin Remodeler
Length = 800
Score = 260 bits (664), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 173/529 (32%), Positives = 264/529 (49%), Gaps = 69/529 (13%)
Query: 383 PPFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLG 442
PPF+ +GG L D+Q G+ W+ L + GI+ DEMGLGKT+Q ++F+
Sbjct: 229 PPFI--KGG---------ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFIS 277
Query: 443 ALHFSNMYK-PSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTD 501
L F+ P I+V P++ + W EKW P + + + Q KS DT
Sbjct: 278 WLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNC-ICYMGNQ---------KSRDT- 326
Query: 502 NDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYA 561
+YE + R K + N +L+TTYE + +L ++W +
Sbjct: 327 -------IREYEFYTNPRAKGKKTMKFN--------VLLTTYEYILKDRAELGSIKWQFM 371
Query: 562 VLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVF 621
+DE HR++N + + + +R+++TG P+QN + EL +L +F+ PG+ +
Sbjct: 372 AVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEI 431
Query: 622 EAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLF 681
+ E N Q + L I P++LRR+K DV LP KTE +L
Sbjct: 432 DFE-----------NQDEEQEEYIHD----LHRRIQPFILRRLKKDVEKSLPSKTERILR 476
Query: 682 CSLTEEQRAVYRAFLAS--SEVEQILDGSRNSLYGI-DVMRKICNHPDLLEREQSCQIPD 738
L++ Q Y+ L S + G SL I + ++K NHP L + + +
Sbjct: 477 VELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQK 536
Query: 739 YGNPE------------RSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASG 786
+G+ + S KM ++ Q+L K GHRVL+F+Q +MLDIL +L G
Sbjct: 537 FGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKG 596
Query: 787 YEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNP 845
++R+DG P QR ID +N+ S+ F+F+L+T+ GGLG NL A+ V+IFD DWNP
Sbjct: 597 INFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNP 656
Query: 846 STDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL 894
D+QA RA RIGQK V VYRL+++ T+EE+V R K L I+
Sbjct: 657 QADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAII 705
>pdb|1Z6A|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE DOMAIN
Length = 500
Score = 238 bits (606), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 160/516 (31%), Positives = 259/516 (50%), Gaps = 89/516 (17%)
Query: 395 PESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSI 454
P +I NL YQ G W+ ++ G + D+MGLGKT+Q ++ N PS+
Sbjct: 31 PYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSL 90
Query: 455 VVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEG 514
V+CP+++L+ W+ E K+ P + H+ + + K D D
Sbjct: 91 VICPLSVLKNWEEELSKFAPHLRFAVFHED-------RSKIKLEDYD------------- 130
Query: 515 NLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNA 574
+++TTY L L +L +VEW Y V+DE I+NP
Sbjct: 131 -----------------------IILTTYAVL-LRDTRLKEVEWKYIVIDEAQNIKNPQT 166
Query: 575 EISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGY 634
+I K+L++ +RI +TG PI+NK+ +LWS+ F+ PG LG F+++FA PI G
Sbjct: 167 KIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDN 226
Query: 635 ANASPLQVSTAYRCAVVLRDLIMPYLLRRMKAD--VNAQLPKKTEHVLFCSLTEEQRAVY 692
L+ +I P++LRR K D + LP K E ++C+LT EQ A+Y
Sbjct: 227 MAKEELKA------------IISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMY 274
Query: 693 RAFLASSEVEQILDGSRNSLYGID----------VMRKICNHPDLLER-EQSCQIPDYGN 741
+A EVE + + + +S+ GI +++I +HP LL+ EQS +
Sbjct: 275 KA-----EVENLFN-NIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVR------ 322
Query: 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS-GYEYRRMDGLTPVKQ 800
RS KM ++++ D+G ++ +F Q M I+ + + E + G K+
Sbjct: 323 --RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKE 380
Query: 801 RMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQ 860
R +I ++ N+ V +L+ K GG G NLT ANRVI FD WNP+ + QA +R +RIGQ
Sbjct: 381 RDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQ 440
Query: 861 KQDVTVYRLITRGTIEEKV-----YHRQIYKHFLTN 891
++V V++LI+ GT+EEK+ + R ++K +++
Sbjct: 441 TRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISS 476
>pdb|1Z63|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
pdb|1Z63|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE CORE IN COMPLEX
With Dsdna
Length = 500
Score = 226 bits (576), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 157/516 (30%), Positives = 253/516 (49%), Gaps = 89/516 (17%)
Query: 395 PESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSI 454
P +I NL YQ G W + G + D+ GLGKT+Q ++ N PS+
Sbjct: 31 PYNIKANLRPYQIKGFSWXRFXNKLGFGICLADDXGLGKTLQTIAVFSDAKKENELTPSL 90
Query: 455 VVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEG 514
V+CP+++L+ W+ E K+ P + H+ + + K D D
Sbjct: 91 VICPLSVLKNWEEELSKFAPHLRFAVFHED-------RSKIKLEDYD------------- 130
Query: 515 NLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNA 574
+++TTY L L +L +VEW Y V+DE I+NP
Sbjct: 131 -----------------------IILTTYAVL-LRDTRLKEVEWKYIVIDEAQNIKNPQT 166
Query: 575 EISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGY 634
+I K+L++ +RI +TG PI+NK+ +LWS+ F+ PG LG F+++FA PI G
Sbjct: 167 KIFKAVKELKSKYRIALTGTPIENKVDDLWSIXTFLNPGLLGSYSEFKSKFATPIKKGDN 226
Query: 635 ANASPLQVSTAYRCAVVLRDLIMPYLLRRMKAD--VNAQLPKKTEHVLFCSLTEEQRAVY 692
L+ +I P++LRR K D + LP K E ++C+LT EQ A Y
Sbjct: 227 XAKEELKA------------IISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAXY 274
Query: 693 RAFLASSEVEQILDGSRNSLYGID----------VMRKICNHPDLLER-EQSCQIPDYGN 741
+A EVE + + + +S+ GI +++I +HP LL+ EQS +
Sbjct: 275 KA-----EVENLFN-NIDSVTGIKRKGXILSTLLKLKQIVDHPALLKGGEQSVR------ 322
Query: 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS-GYEYRRMDGLTPVKQ 800
RS K ++++ D+G ++ +F Q I+ + + E + G K+
Sbjct: 323 --RSGKXIRTXEIIEEALDEGDKIAIFTQFVDXGKIIRNIIEKELNTEVPFLYGELSKKE 380
Query: 801 RMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQ 860
R +I ++ N+ V +L+ K GG G NLT ANRVI FD WNP+ + QA +R +RIGQ
Sbjct: 381 RDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQ 440
Query: 861 KQDVTVYRLITRGTIEEKV-----YHRQIYKHFLTN 891
++V V++LI+ GT+EEK+ + R ++K +++
Sbjct: 441 TRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISS 476
>pdb|1Z5Z|A Chain A, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
pdb|1Z5Z|B Chain B, Sulfolobus Solfataricus Swi2SNF2 ATPASE C-Terminal Domain
Length = 271
Score = 117 bits (294), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 132/239 (55%), Gaps = 31/239 (12%)
Query: 670 AQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGID----------VMR 719
+ LP K E ++C+LT EQ A+Y+A EVE + + + +S+ GI ++
Sbjct: 23 SDLPDKIETNVYCNLTPEQAAMYKA-----EVENLFN-NIDSVTGIKRKGMILSTLLKLK 76
Query: 720 KICNHPDLLER-EQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDIL 778
+I +HP LL+ EQS + RS KM ++++ D+G ++ +F Q M I+
Sbjct: 77 QIVDHPALLKGGEQSVR--------RSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKII 128
Query: 779 ESFLIAS-GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVI 837
+ + E + G K+R +I ++ N+ V +L+ K GG G NLT ANRVI
Sbjct: 129 RNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI 188
Query: 838 IFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKV-----YHRQIYKHFLTN 891
FD WNP+ + QA +R +RIGQ ++V V++LI+ GT+EEK+ + R ++K +++
Sbjct: 189 HFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDIISS 247
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 424 IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQW 465
++ DE+GLGKTI+ L S + +++ P TL QW
Sbjct: 174 LLADEVGLGKTIEAGXILHQQLLSGAAERVLIIVPETLQHQW 215
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 818 ILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVY 867
+L +++G G N A+ + FD +NP Q R RIGQ D+ ++
Sbjct: 560 LLCSEIGSEGRNFQFASHXVXFDLPFNPDLLEQRIGRLDRIGQAHDIQIH 609
>pdb|1ELT|A Chain A, Structure Of Native Pancreatic Elastase From North Atlantic
Salmon At 1.61 Angstroms Resolution
Length = 236
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 32/126 (25%), Positives = 52/126 (41%), Gaps = 20/126 (15%)
Query: 988 DEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRML 1047
+E E+ + S+F IHS N D + +D +RL QAS + AL S +
Sbjct: 65 NEGKEQIMTVNSVF----IHSGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQI 120
Query: 1048 RSRDDISVPTWTGKSGTAGAPSSVRKK----------------FGSTVGSQLIKPLEGSS 1091
++ T GK+ T G S K+ +GSTV + ++ G++
Sbjct: 121 LPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKTTMVCAGGGAN 180
Query: 1092 SNKTGE 1097
S G+
Sbjct: 181 SGCNGD 186
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 766 LLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGG 825
L+F +T++ D LE FL GY + G + R + ++ + ++ T V
Sbjct: 280 LVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP--ILVATAVAA 337
Query: 826 LGTNLTGANRVIIFDPDWNPSTDVQARERAWRIG 859
G +++ VI FD + V R R+G
Sbjct: 338 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG 371
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 766 LLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGG 825
L+F +T++ D LE FL GY + G + R + ++ + ++ T V
Sbjct: 50 LVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSP--ILVATAVAA 107
Query: 826 LGTNLTGANRVIIFDPDWNPSTDVQARERAWRIG 859
G +++ VI FD + V R R+G
Sbjct: 108 RGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG 141
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 30.0 bits (66), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 766 LLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGG 825
++F QT++ L +I G++ + G V+QR ++I + + + ++TT V
Sbjct: 38 IIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEK--VLITTNVCA 95
Query: 826 LGTNLTGANRVIIFD--------PDWNPSTDVQARERAWRIGQK 861
G ++ V+ FD PD+ T + R R G+K
Sbjct: 96 RGIDVKQVTIVVNFDLPVKQGEEPDY--ETYLHRIGRTGRFGKK 137
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 766 LLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNS-SDVFIFILTTKVG 824
++F T++ ++L L + G+E + G ++R LID++ S V I TT V
Sbjct: 40 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLI---TTNVL 96
Query: 825 GLGTNLTGANRVIIFD------PDWNPSTDVQARERAWRIGQK 861
G ++ + V+ +D +P+T + R R G+K
Sbjct: 97 ARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRK 139
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 30.0 bits (66), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 766 LLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNS-SDVFIFILTTKVG 824
++F T++ ++L L + G+E + G ++R LID++ S V I TT V
Sbjct: 41 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLI---TTNVL 97
Query: 825 GLGTNLTGANRVIIFD------PDWNPSTDVQARERAWRIGQK 861
G ++ + V+ +D +P+T + R R G+K
Sbjct: 98 ARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRK 140
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 766 LLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNS-SDVFIFILTTKVG 824
++F T++ ++L L + G+E + G ++R LID++ S V I TT V
Sbjct: 247 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLI---TTNVL 303
Query: 825 GLGTNLTGANRVIIFD-PDW-----NPSTDVQARERAWRIGQK 861
G ++ + V+ +D P +P+T + R R G+K
Sbjct: 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRK 346
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 30.0 bits (66), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 766 LLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNS-SDVFIFILTTKVG 824
++F T++ ++L L + G+E + G ++R LID++ S V I TT V
Sbjct: 247 IIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLI---TTNVL 303
Query: 825 GLGTNLTGANRVIIFD-PDW-----NPSTDVQARERAWRIGQK 861
G ++ + V+ +D P +P+T + R R G+K
Sbjct: 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRK 346
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,081,846
Number of Sequences: 62578
Number of extensions: 1302844
Number of successful extensions: 2441
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2411
Number of HSP's gapped (non-prelim): 21
length of query: 1231
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1121
effective length of database: 8,089,757
effective search space: 9068617597
effective search space used: 9068617597
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)