BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044798
(1231 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P40352|RAD26_YEAST DNA repair and recombination protein RAD26 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RAD26 PE=1
SV=1
Length = 1085
Score = 686 bits (1769), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/830 (45%), Positives = 527/830 (63%), Gaps = 68/830 (8%)
Query: 384 PFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA 443
P L KIP I++ LF+YQK VQWL+EL+ Q GGIIGDEMGLGKTIQV++F+ A
Sbjct: 279 PDAKLNSQFKIPGEIYSLLFNYQKTCVQWLYELYQQNCGGIIGDEMGLGKTIQVIAFIAA 338
Query: 444 LHFSNMYK-PSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKK-RAKSSDTD 501
LH S + P ++VCP T+++QW E + W+P +LH + +K + +D +
Sbjct: 339 LHHSGLLTGPVLIVCPATVMKQWCNEFQHWWPPLRTVILHSMGSGMASDQKFKMDENDLE 398
Query: 502 NDGEGSHDSD--YEGNLSSRNPKK-------WDLLINRVLRSESGLLITTYEQLRLLGEK 552
N S SD YE +S KK D LI++V+ ++ +LITTY LR+ +K
Sbjct: 399 NLIMNSKPSDFSYEDWKNSTRTKKALESSYHLDKLIDKVV-TDGHILITTYVGLRIHSDK 457
Query: 553 LLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFP 612
LL V+W YAVLDEGH+IRNP++EISL CK+L+T +RII++G PIQN L+ELWSLFDF+FP
Sbjct: 458 LLKVKWQYAVLDEGHKIRNPDSEISLTCKKLKTHNRIILSGTPIQNNLTELWSLFDFIFP 517
Query: 613 GKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQL 672
GKLG LPVF+ +F +PI +GGYANA+ +QV T Y+CAV LRDLI PYLLRR+KADV L
Sbjct: 518 GKLGTLPVFQQQFVIPINIGGYANATNIQVQTGYKCAVALRDLISPYLLRRVKADVAKDL 577
Query: 673 PKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQ 732
P+K E VLFC LT+ QR+ Y FL SS++ QI +G RN L+GID++RKICNHPDLL+R+
Sbjct: 578 PQKKEMVLFCKLTKYQRSKYLEFLHSSDLNQIQNGKRNVLFGIDILRKICNHPDLLDRDT 637
Query: 733 SCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIA-----SGY 787
PDYG+P+RS KM+VV Q+L +W QG++ LLF Q++QMLDILE F+ S
Sbjct: 638 KRHNPDYGDPKRSGKMQVVKQLLLLWHKQGYKALLFTQSRQMLDILEEFISTKDPDLSHL 697
Query: 788 EYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPST 847
Y RMDG T +K R +L+D +NN S +F+LTT+VGGLG NLTGANR+IIFDPDWNPST
Sbjct: 698 NYLRMDGTTNIKGRQSLVDRFNNES-FDVFLLTTRVGGLGVNLTGANRIIIFDPDWNPST 756
Query: 848 DVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARN 907
D+QARERAWRIGQK++V++YRL+ G+IEEK+YHRQI+K FLTN+IL +P+Q+RFFK
Sbjct: 757 DMQARERAWRIGQKREVSIYRLMVGGSIEEKIYHRQIFKQFLTNRILTDPKQKRFFKIHE 816
Query: 908 MKDLFTLNDDGNGGSTETSNIFSQLSEDVNVVGDQKDKEDKQKHKKAASANADDAVGDKE 967
+ DLF+L + NG STE +L+E+V QK E+ + K S + + V
Sbjct: 817 LHDLFSLGGE-NGYSTE------ELNEEV-----QKHTENLKNSKSEESDDFEQLV---- 860
Query: 968 NNLEIGS---SRRKGKEKVDNIGDEVDEETNILKSLFDA-NGIHSAMNHDAIMNAH--DE 1021
NL S S GKEK +N E D +++ L + + + M+HD+++N+H
Sbjct: 861 -NLSGVSKLESFYNGKEKKENSKTEDDR---LIEGLLGGESNLETVMSHDSVVNSHAGSS 916
Query: 1022 EKMRLEEQASQVAQRAAEALRQSR-MLRSRDDISVPTWTGKSGTAGAPSSVRKK------ 1074
+ ++AS+VA A ALR+SR + + +I PTWTG+ G AG +RK+
Sbjct: 917 SSNIITKEASRVAIEAVNALRKSRKKITKQYEIGTPTWTGRFGKAG---KIRKRDPLKNK 973
Query: 1075 ---FGSTVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLARIRGNQENAVGAG 1131
+ +G+ E S + ++ A + ++ S+++ L IR A
Sbjct: 974 LTGSAAILGNITKSQKEASKEARQENYDDGITFARSKEINSNTKTLENIR--------AY 1025
Query: 1132 LERQFEVASSSANVARFADTRTSRSSKNASDVQPEILIRQICTFMQQRGG 1181
L++Q SSS ++ S S K ++ L++ I F ++R G
Sbjct: 1026 LQKQNNFFSSSVSI--LNSIGVSLSDKEDV-IKVRALLKTIAQFDKERKG 1072
>sp|Q9UR24|RHP26_SCHPO DNA repair protein rhp26 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp26 PE=4 SV=1
Length = 973
Score = 682 bits (1759), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/680 (50%), Positives = 454/680 (66%), Gaps = 27/680 (3%)
Query: 387 TLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF 446
T EGG IP I +LF YQ VQWLWEL+CQ AGGIIGDEMGLGKTIQ++SFL +LH
Sbjct: 262 TFEGGFTIPGDIRPHLFRYQVTCVQWLWELYCQEAGGIIGDEMGLGKTIQIVSFLSSLHH 321
Query: 447 SNMY-KPSIVVCPVTLLRQWKREAEKWYPSFHVELLH--DSAQDLGFRKKRAKSSDTDND 503
S + KP+++VCP TL++QW E W+ V +LH S Q K++ +S ++++
Sbjct: 322 SGKFQKPALIVCPATLMKQWVNEFHTWWAPLRVVVLHATGSGQRASREKRQYESDASESE 381
Query: 504 GEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVL 563
E S S SS + L+ V + +LITTY LR+ G+ +L EWGY VL
Sbjct: 382 AEESKTSIKLRGASSSFHRYAKNLVESVF-TRGHILITTYAGLRIYGDLILPREWGYCVL 440
Query: 564 DEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEA 623
DEGH+IRNP++EIS+ CKQ++TV+RII++G PIQN L+ELW+LFDFVFPG+LG LPVF+
Sbjct: 441 DEGHKIRNPDSEISISCKQIRTVNRIILSGTPIQNNLTELWNLFDFVFPGRLGTLPVFQN 500
Query: 624 EFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCS 683
+FA+PI +GGYANAS +QV TAY+CA +LRDLI PYLLRRMK DV A LPKK+E VLFC
Sbjct: 501 QFALPINIGGYANASNVQVQTAYKCACMLRDLISPYLLRRMKLDVAADLPKKSEQVLFCK 560
Query: 684 LTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPD--YGN 741
LT QR Y+ FL S++++IL+G R LYGID++RKICNHPDL+ RE D YG+
Sbjct: 561 LTPLQRKAYQDFLQGSDMQKILNGKRQMLYGIDILRKICNHPDLVTREYLLHKEDYNYGD 620
Query: 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLI-ASGYEYRRMDGLTPVKQ 800
PE+S K+KV+ +L +WK QGHR LLF+QT+QMLDILE L Y RMDG T +
Sbjct: 621 PEKSGKLKVIRALLTLWKKQGHRTLLFSQTRQMLDILEIGLKDLPDVHYCRMDGSTSIAL 680
Query: 801 RMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQ 860
R L+D +N + +F+LTT+VGGLG NLTGA+RVI+FDPDWNPSTD QARERAWR+GQ
Sbjct: 681 RQDLVDNFNKNEYFDVFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARERAWRLGQ 740
Query: 861 KQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGNG 920
K+DV VYRL+T GTIEEK+YHRQI+K FLTNKILK+P+QRRFFK ++ DLFTL D+
Sbjct: 741 KKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNKILKDPKQRRFFKMTDLHDLFTLGDNKTE 800
Query: 921 GSTETSNIF---------SQLSEDVNVVGD--QKDKEDKQKHKKAASANADDAVGDKENN 969
G TET ++F S + N D +D++ + H K N+
Sbjct: 801 G-TETGSMFLGSERVLRKDNSSRNGNEAEDIPARDRKKHKIHDKGKKVNSSKVF----EK 855
Query: 970 LEIGSSRRKGKEKVDNI----GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMR 1025
+ I S + + N+ D + ++L +F + GI S + HD IM A E +
Sbjct: 856 MGIASMEKYKPPQESNVTKTNSDSTLGDDSVLDDIFASAGIQSTLKHDDIMEASQTESIL 915
Query: 1026 LEEQASQVAQRAAEALRQSR 1045
+E++A++VA A A+ R
Sbjct: 916 VEKEATRVANEALRAVSSFR 935
>sp|Q03468|ERCC6_HUMAN DNA excision repair protein ERCC-6 OS=Homo sapiens GN=ERCC6 PE=1 SV=1
Length = 1493
Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/590 (51%), Positives = 396/590 (67%), Gaps = 61/590 (10%)
Query: 371 KQEDDEDSDNNEPPFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMG 430
K EDD + + E + G K+P +F LF YQ+ GV+WLWELHCQ+AGGI+GDEMG
Sbjct: 481 KLEDDSEESDAE-----FDEGFKVPGFLFKKLFKYQQTGVRWLWELHCQQAGGILGDEMG 535
Query: 431 LGKTIQVLSFLGALHFSNM------YK-----PSIVVCPVTLLRQWKREAEKWYPSFHVE 479
LGKTIQ+++FL L +S + Y+ P+++VCP T++ QW +E W+P F V
Sbjct: 536 LGKTIQIIAFLAGLSYSKIRTRGSNYRFEGLGPTVIVCPTTVMHQWVKEFHTWWPPFRVA 595
Query: 480 LLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLL 539
+LH++ G +H K + LI V G+L
Sbjct: 596 ILHET-------------------GSYTH--------------KKEKLIRDVAHCH-GIL 621
Query: 540 ITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNK 599
IT+Y +RL+ + + +W Y +LDEGH+IRNPNA ++L CKQ +T HRII++G+P+QN
Sbjct: 622 ITSYSYIRLMQDDISRYDWHYVILDEGHKIRNPNAAVTLACKQFRTPHRIILSGSPMQNN 681
Query: 600 LSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPY 659
L ELWSLFDF+FPGKLG LPVF +F+VPIT+GGY+NASP+QV TAY+CA VLRD I PY
Sbjct: 682 LRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASPVQVKTAYKCACVLRDTINPY 741
Query: 660 LLRRMKADV--NAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDV 717
LLRRMK+DV + LP K E VLFC LT+EQ VY+ F+ S EV +IL+G G+
Sbjct: 742 LLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVYQNFVDSKEVYRILNGEMQIFSGLIA 801
Query: 718 MRKICNHPDLLER--EQSCQIPD-------YGNPERSEKMKVVAQVLKVWKDQGHRVLLF 768
+RKICNHPDL + +PD +G +RS KM VV +LK+W QG RVLLF
Sbjct: 802 LRKICNHPDLFSGGPKNLKGLPDDELEEDQFGYWKRSGKMIVVESLLKIWHKQGQRVLLF 861
Query: 769 AQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGT 828
+Q++QMLDILE FL A Y Y +MDG T + R LI YN + +F+F+LTT+VGGLG
Sbjct: 862 SQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRYNEDTSIFVFLLTTRVGGLGV 921
Query: 829 NLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHF 888
NLTGANRV+I+DPDWNPSTD QARERAWRIGQK+ VTVYRL+T GTIEEK+YHRQI+K F
Sbjct: 922 NLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYRLLTAGTIEEKIYHRQIFKQF 981
Query: 889 LTNKILKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVNV 938
LTN++LK+P+QRRFFK+ ++ +LFTL STETS IF+ DV
Sbjct: 982 LTNRVLKDPKQRRFFKSNDLYELFTLTSPDASQSTETSAIFAGTGSDVQT 1031
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/305 (26%), Positives = 131/305 (42%), Gaps = 26/305 (8%)
Query: 944 DKEDKQKHKKAASANADDAVGDKENNLEIGSSRRKGKEKVDNIGDEVDEETN---ILKSL 1000
+K + K K S + DA + + RR K+ +N E E++N +L+ L
Sbjct: 1197 EKHLRPKQKPKNSKHCRDAKFEGTRIPHLVKKRRYQKQDSEN-KSEAKEQSNDDYVLEKL 1255
Query: 1001 FDAN-GIHSAMNHDAIMNAHDEEKMRLEEQASQVAQRAAEALRQSRMLRSRDDIS-VPTW 1058
F + G+HS M HDAIM+ + + +E +A++VAQ A +ALR SR R +S VPTW
Sbjct: 1256 FKKSVGVHSVMKHDAIMDGASPDYVLVEAEANRVAQDALKALRLSRQ-RCLGAVSGVPTW 1314
Query: 1059 TGKSGTAGAPSSVRKKFGSTVGSQLIKPLEGSSSNKTGEFNSFGAGASAGKVLSSSELLA 1118
TG G +GAP+ + +FG S ++ SS E G GK +
Sbjct: 1315 TGHRGISGAPAGKKSRFGKKRNSNF--SVQHPSSTSPTEKCQDGIMKKEGK----DNVPE 1368
Query: 1119 RIRGNQENA--VGAGLERQFEVASSSANVARFADTRTSRSS---KNASDVQPE------- 1166
G E+A L +A A R S + AS + P
Sbjct: 1369 HFSGRAEDADSSSGPLASSSLLAKMRARNHLILPERLESESGHLQEASALLPTTEHDDLL 1428
Query: 1167 ILIRQICTFMQQRGGSSNSACIVEHFKDRVPSKDLPLFKNLLKEIATLQKDPSGSR-WVL 1225
+ +R F G +++ I++ F+ ++ + +F+ LL+ + T + G W L
Sbjct: 1429 VEMRNFIAFQAHTDGQASTREILQEFESKLSASQSCVFRELLRNLCTFHRTSGGEGIWKL 1488
Query: 1226 KLNFV 1230
K +
Sbjct: 1489 KPEYC 1493
>sp|A2BGR3|ERC6L_DANRE DNA excision repair protein ERCC-6-like OS=Danio rerio GN=ercc6l
PE=1 SV=1
Length = 1451
Score = 351 bits (901), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 197/587 (33%), Positives = 316/587 (53%), Gaps = 94/587 (16%)
Query: 391 GLKIPESIFNNLFDYQKVGVQWLWELHCQ-RAGGIIGDEMGLGKTIQVLSFLGALHFSNM 449
GLK+ + +++ L+D+QK GV +L+ L+ R GGI+ D+MGLGKTIQV+SFL ++ + +
Sbjct: 94 GLKLYKGLYDKLYDHQKEGVAFLYSLYRDGRKGGILADDMGLGKTIQVISFLSGMYDAEL 153
Query: 450 YKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHD 509
+++V P +L++ W RE KW P V+ H GS
Sbjct: 154 ANHTLLVMPTSLIKNWVREFAKWTPGMRVKEFH-----------------------GSSK 190
Query: 510 SDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRI 569
++ NL R +K ++I +LI YEQL G + + +W Y +LDE H+I
Sbjct: 191 TERNRNLE-RIQRKGGVIITTY-----QMLINNYEQLGSNGHR--EFKWDYVILDEAHKI 242
Query: 570 RNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGK-LGVLPVFEAEFAVP 628
+ + + + + +R+++TG P+QN L E+W+LFDF G LG F+ E+ P
Sbjct: 243 KTSSTKTAKSAHAIPAKNRVLLTGTPVQNNLREMWALFDFACQGSLLGTSKTFKTEYENP 302
Query: 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADV-------------------- 668
IT +A+P + + R + L D+I PY LRR KADV
Sbjct: 303 ITRAREKDATPGEKALGLRISQNLTDIIKPYFLRRTKADVQQKKLKLEEGFEEEEDQENK 362
Query: 669 --NAQ-------LPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMR 719
NA+ L +K + +++ L+ Q +Y F++ +++++L +R+ L + V++
Sbjct: 363 CPNAREGVEMPSLTRKNDLIVWTYLSSVQEDIYNKFISLDQIKELLTTTRSPLAELTVLK 422
Query: 720 KICNHPDLLEREQSCQ--------------------------IPDYGNPERSEKMKVVAQ 753
K+C+HP LL + Q I D+ E S K++ V
Sbjct: 423 KLCDHPRLLSQRAVIQLGLERGSDSELVHSDESESAVSQIDNISDHTLIEESGKLQFVVS 482
Query: 754 VLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDG-LTPVKQRMALIDEYNNSS 812
+++ +++GHR L+F+Q+++MLDI+E L + R+DG +T + +R I +
Sbjct: 483 LMECLREEGHRTLIFSQSRKMLDIMERVLRNRNFRLLRLDGTVTQLAEREKRISLFQTDK 542
Query: 813 DVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITR 872
IF+LTT+VGG+G LTGANRV+IFDP WNP+TD QA +RA+RIGQ ++V +YRLIT
Sbjct: 543 RYTIFLLTTQVGGVGITLTGANRVVIFDPSWNPATDAQAVDRAYRIGQTENVIIYRLITC 602
Query: 873 GTIEEKVYHRQIYKHFLTNKIL---KNPQQRRFFKARNMKDLFTLND 916
GT+EEK+Y RQ++K L + KNP R+F + +++LF L D
Sbjct: 603 GTVEEKIYRRQVFKDSLIRQTTGDKKNP--FRYFSKQELRELFKLED 647
>sp|Q2NKX8|ERC6L_HUMAN DNA excision repair protein ERCC-6-like OS=Homo sapiens GN=ERCC6L
PE=1 SV=1
Length = 1250
Score = 338 bits (866), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 194/610 (31%), Positives = 318/610 (52%), Gaps = 105/610 (17%)
Query: 371 KQEDDEDSDNNEPPFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQ-RAGGIIGDEM 429
+Q DDE +D GL + + N LF++QK G+ +L+ L+ R GGI+ D+M
Sbjct: 72 EQGDDEFTD-------VCNSGLLLYRELHNQLFEHQKEGIAFLYSLYRDGRKGGILADDM 124
Query: 430 GLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLG 489
GLGKT+Q+++FL + +++ +++ P L+ W +E KW P V+ H ++D
Sbjct: 125 GLGKTVQIIAFLSGMFDASLVNHVLLIMPTNLINTWVKEFIKWTPGMRVKTFHGPSKDER 184
Query: 490 FRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQL--- 546
R +NR+ + +G++ITTY+ L
Sbjct: 185 TRN-----------------------------------LNRI-QQRNGVIITTYQMLINN 208
Query: 547 --RLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELW 604
+L + + W Y +LDE H+I+ + + ++ + + +R+++TG PIQN L ELW
Sbjct: 209 WQQLSSFRGQEFVWDYVILDEAHKIKTSSTKSAICARAIPASNRLLLTGTPIQNNLQELW 268
Query: 605 SLFDFVFPGKL-GVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRR 663
SLFDF G L G L F+ E+ PIT +A+P + + ++ + L +I PY LRR
Sbjct: 269 SLFDFACQGSLLGTLKTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPYFLRR 328
Query: 664 MKADVNAQ------------------------LPKKTEHVLFCSLTEEQRAVYRAFLASS 699
K DV + L +K + +++ L Q +YR F++
Sbjct: 329 TKEDVQKKKSSNPEARLNEKNPDVDAICEMPSLSRKNDLIIWIRLVPLQEEIYRKFVSLD 388
Query: 700 EVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSC------------------------- 734
++++L +R+ L + V++K+C+HP LL C
Sbjct: 389 HIKELLMETRSPLAELGVLKKLCDHPRLLSARACCLLNLGTFSAQDGNEGEDSPDVDHID 448
Query: 735 QIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDG 794
Q+ D E S KM + +LK +D+GH+ L+F+Q++Q+L+I+E L ++ R+DG
Sbjct: 449 QVTDDTLMEESGKMIFLMDLLKRLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDG 508
Query: 795 -LTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARE 853
+T + +R I+ + + D +F+LTT+VGG+G LT A RV+IFDP WNP+TD QA +
Sbjct: 509 TVTHLLEREKRINLFQQNKDYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVD 568
Query: 854 RAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL---KNPQQRRFFKARNMKD 910
R +RIGQK++V VYRLIT GT+EEK+Y RQ++K L + KNP R+F + +++
Sbjct: 569 RVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGEKKNP--FRYFSKQELRE 626
Query: 911 LFTLNDDGNG 920
LFT+ D N
Sbjct: 627 LFTIEDLQNS 636
>sp|A6QQR4|ERC6L_BOVIN DNA excision repair protein ERCC-6-like OS=Bos taurus GN=ERCC6L
PE=2 SV=1
Length = 1242
Score = 335 bits (859), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 198/618 (32%), Positives = 331/618 (53%), Gaps = 93/618 (15%)
Query: 364 MSSYEEEKQEDDEDSDNNEPPFV-TLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQ-RA 421
MS ++ ++ +E +++ + F+ GL + + + N L++YQK G+ +L+ L+ R
Sbjct: 57 MSRIQKIQEALEELAEHGDDEFIDVCNSGLLLYQELHNQLYEYQKEGIAFLYSLYRDGRR 116
Query: 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELL 481
GGI+ D+MGLGKT+Q+++FL + +++ +++ P +L+ W RE KW P V+
Sbjct: 117 GGILADDMGLGKTVQIIAFLSGMFDASLVNHVLLIMPTSLISTWLREFVKWTPGMRVKTF 176
Query: 482 HDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLIT 541
H ++D R NL + N V+ + +LI
Sbjct: 177 HGPSKDERTR-----------------------NLCRIQQR------NGVIITTYQMLIN 207
Query: 542 TYEQLRLL-GEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKL 600
++QL L G++ L W Y +LDE H+I++ + + ++ + + +RI++TG PIQN L
Sbjct: 208 NWQQLSSLNGQEFL---WDYVILDEAHKIKSSSTKSAICARAIPASNRILLTGTPIQNNL 264
Query: 601 SELWSLFDFVFPGKL-GVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPY 659
ELWSLFDF G L G L F+ E+ PIT +A+P + + ++ + L +I PY
Sbjct: 265 QELWSLFDFACQGSLLGTLRTFKMEYENPITRAREKDATPGEKALGFKISENLMAIIKPY 324
Query: 660 LLRRMKADVNAQ------------------------LPKKTEHVLFCSLTEEQRAVYRAF 695
LRR K +V + L +K + +++ L Q +YR F
Sbjct: 325 FLRRTKEEVQKKKSSNPEVQLSEKSPDVGAICEMPSLSRKNDLIIWIRLVPLQEEIYRKF 384
Query: 696 LASSEVEQILDGSRNSLYGIDVMRKICNHPDLL---------------------EREQSC 734
++ ++++L +R+ L + V++K+C+HP LL E E S
Sbjct: 385 VSLDHIKELLMETRSPLAELGVLKKLCDHPRLLSARACGLLNLGAAKFSVQDEIEGEDSS 444
Query: 735 ------QIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYE 788
QI D E S KM + +LK +D+GH+ L+F+Q++++L+I+E L ++
Sbjct: 445 DVDHIDQISDDTLMEESGKMLFLMDLLKKLRDEGHQTLVFSQSRRILNIIERLLKNRHFK 504
Query: 789 YRRMDG-LTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPST 847
R+DG +T + +R I + + D +F+LTT+VGG+G LT A+RV+IFDP WNP+T
Sbjct: 505 ILRIDGTITHLVEREKRISLFQQNKDYSVFLLTTQVGGVGLTLTAASRVVIFDPSWNPAT 564
Query: 848 DVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL---KNPQQRRFFK 904
D QA +R +RIGQK++V VYRLIT GT+EEK+Y RQ++K L + KNP R+F
Sbjct: 565 DAQAVDRVYRIGQKENVVVYRLITCGTVEEKIYRRQVFKDSLIRQTTGDKKNP--FRYFS 622
Query: 905 ARNMKDLFTLNDDGNGGS 922
+ +++LFT+ D N +
Sbjct: 623 KQELRELFTIEDFQNSAT 640
>sp|Q9JIM3|RAD26_MOUSE Putative DNA repair and recombination protein RAD26-like OS=Mus
musculus GN=Rad26l PE=2 SV=2
Length = 699
Score = 326 bits (836), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 206/638 (32%), Positives = 326/638 (51%), Gaps = 122/638 (19%)
Query: 351 RLEENEDSRDSLDMSSYEEEKQEDDEDSDNNEP----PFVTLEGGLKIPESIFNNLFDYQ 406
RL+E + ++D ++++ E D P F E G IP +I L DYQ
Sbjct: 67 RLQEVKSTKDYSRSLIFDDKDLEKPYFPDRKIPSLASAFQLSEDGDSIPYTINRYLRDYQ 126
Query: 407 KVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA-LH----------------FSNM 449
+ G Q+L+ + + G I+GD+MGLGKTIQV+SFL A LH +M
Sbjct: 127 REGAQFLYRHYIEGRGCILGDDMGLGKTIQVISFLAAVLHKKGTREDIENNMPEFLLKSM 186
Query: 450 YK--PS------IVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTD 501
K PS ++V P+++L WK E + W F V +LH S +D
Sbjct: 187 KKKPPSTAKKMFLIVAPLSVLYNWKDELDTW-GYFRVTVLHGSKKD-------------- 231
Query: 502 NDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYA 561
N+ + R+ + + + +TTYE LRL E+L +EW
Sbjct: 232 NE------------------------LLRLKQRKCEIALTTYETLRLCLEELNSLEWSAI 267
Query: 562 VLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVF 621
++DE HRI+NP A ++ V K ++ RI +TG +QN + ELW + D+ PG LG F
Sbjct: 268 IVDEAHRIKNPKARVTEVMKAVKCKVRIGLTGTVLQNNMKELWCVMDWAVPGLLGSRIHF 327
Query: 622 EAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLF 681
+ +F+ P+ G A+ +++T + L + + LRR K + QLPKK + +++
Sbjct: 328 KKQFSDPVEHGQRHTATKRELATGRKAMHRLAKKMSGWFLRRTKTLIKGQLPKKEDRMVY 387
Query: 682 CSLTEEQRAVYRAFLASSEVEQILDGSRNSLYG--------------------------I 715
CSLT+ Q+AVY+ L + +V IL S+ G +
Sbjct: 388 CSLTDFQKAVYQTVLETEDVALILTSSQPCTCGSGQKRRKCCYKTNSRGDTVRTLCLSYL 447
Query: 716 DVMRKICNH----------------------------PDLLEREQSCQIPDYGNPERSEK 747
V++K+ NH PD +++ + +P+ S K
Sbjct: 448 TVLQKVANHVALLQAASTSKHQETVIKRICDRVFSRFPDFVQKSKDAAFETLSDPKYSGK 507
Query: 748 MKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDE 807
MKV+ Q+L ++ Q +VLLF+ + ++LD+L+ + +ASG +YRR+DG T ++R+ ++ E
Sbjct: 508 MKVLQQLLNHFRKQRDKVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKE 567
Query: 808 YNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVY 867
+N+S DV I +++T GGLG N GAN VI+FDP WNP+ D+QA +RA+RIGQ +DV V
Sbjct: 568 FNSSQDVNICLVSTMAGGLGLNFVGANVVILFDPTWNPANDLQAVDRAYRIGQCRDVKVL 627
Query: 868 RLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKA 905
RLI+ GT+EE +Y RQ+YK L ++ + +R+F+A
Sbjct: 628 RLISLGTVEEIMYLRQVYKQQLHCVVVGSENAKRYFEA 665
>sp|Q5T890|RAD26_HUMAN Putative DNA repair and recombination protein RAD26-like OS=Homo
sapiens GN=RAD26L PE=1 SV=1
Length = 712
Score = 319 bits (817), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 202/622 (32%), Positives = 313/622 (50%), Gaps = 129/622 (20%)
Query: 374 DDEDSDNNEPP----------FVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGG 423
DDED + P F + G IP +I L DYQ+ G ++L+ + G
Sbjct: 96 DDEDLEKPYFPNRKFPSSSVAFKLSDNGDSIPYTINRYLRDYQREGTRFLYGHYIHGGGC 155
Query: 424 IIGDEMGLGKTIQVLSFLGA-LH-------------------------FSNMYKPSIVVC 457
I+GD+MGLGKT+QV+SFL A LH S K ++V
Sbjct: 156 ILGDDMGLGKTVQVISFLAAVLHKKGTREDIENNMPEFLLRSMKKEPLSSTAKKMFLIVA 215
Query: 458 PVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLS 517
P+++L WK E + W F V +LH G RK DN+
Sbjct: 216 PLSVLYNWKDELDTW-GYFRVTVLH------GNRK--------DNE-------------- 246
Query: 518 SRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEIS 577
+ RV + + + +TTYE LRL ++L +EW ++DE HRI+NP A ++
Sbjct: 247 ----------LIRVKQRKCEIALTTYETLRLCLDELNSLEWSAVIVDEAHRIKNPKARVT 296
Query: 578 LVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANA 637
V K L+ RI +TG +QN + ELW + D+ PG LG F+ +F+ P+ G A
Sbjct: 297 EVMKALKCNVRIGLTGTILQNNMKELWCVMDWAVPGLLGSGTYFKKQFSDPVEHGQRHTA 356
Query: 638 SPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLA 697
+ +++T + L + + LRR K + QLPKK + +++CSLT+ Q+AVY+ L
Sbjct: 357 TKRELATGRKAMQRLAKKMSGWFLRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLE 416
Query: 698 SSEVEQILDGS-----------RNSLYG---------------IDVMRKICNH------- 724
+ +V IL S RN Y + V++K+ NH
Sbjct: 417 TEDVTLILQSSEPCTCRSGQKRRNCCYKTNSHGETVKTLYLSYLTVLQKVANHVALLQAA 476
Query: 725 ---------------------PDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGH 763
PD +++ + +P+ S KMKV+ Q+L +
Sbjct: 477 STSKQQETLIKRICDQVFSRFPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRD 536
Query: 764 RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKV 823
+VLLF+ + ++LD+L+ + +ASG +YRR+DG T ++R+ ++ E+N++ DV I +++T
Sbjct: 537 KVLLFSFSTKLLDVLQQYCMASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLVSTMA 596
Query: 824 GGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQ 883
GGLG N GAN V++FDP WNP+ D+QA +RA+RIGQ +DV V RLI+ GT+EE +Y RQ
Sbjct: 597 GGLGLNFVGANVVVLFDPTWNPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIMYLRQ 656
Query: 884 IYKHFLTNKILKNPQQRRFFKA 905
IYK L ++ + +R+F+A
Sbjct: 657 IYKQQLHCVVVGSENAKRYFEA 678
>sp|Q8BHK9|ERC6L_MOUSE DNA excision repair protein ERCC-6-like OS=Mus musculus GN=Ercc6l
PE=1 SV=1
Length = 1240
Score = 319 bits (817), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 183/588 (31%), Positives = 310/588 (52%), Gaps = 100/588 (17%)
Query: 391 GLKIPESIFNNLFDYQKVGVQWLWELHCQ-RAGGIIGDEMGLGKTIQVLSFLGALHFSNM 449
GL + ++ LF++QK G+ +L+ L+ R GGI+ D+MGLGKT+Q+++FL + +++
Sbjct: 86 GLLLYRELYEKLFEHQKEGIAFLYSLYKDGRKGGILADDMGLGKTVQIIAFLSGMFDASL 145
Query: 450 YKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHD 509
+++ P L+ W E KW P V+ H S+ + +R +S
Sbjct: 146 VNHVLLIMPTNLINTWVNEFAKWTPGMRVKTFHGSS-----KSERTRS------------ 188
Query: 510 SDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVE-----WGYAVLD 564
+ R+ + +G++ITTY+ L ++L W Y +LD
Sbjct: 189 ------------------LTRI-QQRNGVVITTYQMLLNNWQQLASFNGQAFVWDYVILD 229
Query: 565 EGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKL-GVLPVFEA 623
E H+I++ + + ++ + + +R+++TG P+QN L ELWSLFDF G L G L F+
Sbjct: 230 EAHKIKSASTKSAVCARAIPASNRLLLTGTPVQNNLQELWSLFDFACQGSLLGTLKTFKM 289
Query: 624 EFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQ------------ 671
E+ PI +A+P + + + + L ++I PY LRR K +V +
Sbjct: 290 EYEHPIIRAREKDATPGEKALGLKISENLMEIIKPYFLRRTKEEVQTKKADNPEARLGEK 349
Query: 672 ------------LPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMR 719
L +K + +++ L Q +YR F++ ++++L +R+ L + V++
Sbjct: 350 NPAGEAICDMFSLARKNDLIVWIRLLPLQEEIYRKFVSLDHIKELLMETRSPLAELGVLK 409
Query: 720 KICNHPDLL-------------------EREQSC--------QIPDYGNPERSEKMKVVA 752
K+C+HP LL E EQ +PD + S KM +
Sbjct: 410 KLCDHPRLLSARACRLLNLGTATFSAQDENEQEDVSNMNSIDHLPDKTLIQESGKMIFLM 469
Query: 753 QVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDG-LTPVKQRMALIDEYNNS 811
+L+ +D+GH+ L+F+Q+ ++L+I+E L ++ R+DG +T + +R I + +
Sbjct: 470 SLLERLQDEGHQTLVFSQSIKILNIIERLLKNKHFKTLRIDGTVTHLWEREKRIQLFQQN 529
Query: 812 SDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLIT 871
+ +F+LTT+VGG+G LT A RV+IFDP WNP+TD QA +R +RIGQK++V VYRLIT
Sbjct: 530 KEYSVFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLIT 589
Query: 872 RGTIEEKVYHRQIYKHFLTNKIL---KNPQQRRFFKARNMKDLFTLND 916
GT+EEK+Y RQ++K L + KNP R+F + +K+LFT+ D
Sbjct: 590 CGTVEEKIYRRQVFKDSLIRQTTGEKKNP--FRYFTKQELKELFTVGD 635
>sp|Q08773|ISW2_YEAST ISWI chromatin-remodeling complex ATPase ISW2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ISW2 PE=1
SV=1
Length = 1120
Score = 303 bits (775), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 183/524 (34%), Positives = 278/524 (53%), Gaps = 67/524 (12%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYK-PSIVVCPVT 460
L DYQ G+ WL LH + GI+ DEMGLGKT+Q +SFLG L + + P +++ P +
Sbjct: 184 LRDYQVQGLNWLISLHENKLSGILADEMGLGKTLQTISFLGYLRYVKQIEGPFLIIVPKS 243
Query: 461 LLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
L W+RE KW P+ +V +LH G + RA
Sbjct: 244 TLDNWRREFLKWTPNVNVLVLH------GDKDTRA------------------------- 272
Query: 521 PKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVC 580
D++ N +L + +LIT+YE + L + W Y V+DE HRI+N + +S +
Sbjct: 273 ----DIVRNIILEARFDVLITSYEMVIREKNALKRLAWQYIVIDEAHRIKNEQSALSQII 328
Query: 581 KQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPL 640
+ + +R+++TG P+QN L ELW+L +F+ P G +F+ F
Sbjct: 329 RLFYSKNRLLITGTPLQNNLHELWALLNFLLPDIFGDSELFDEWFE-------------- 374
Query: 641 QVSTAYRCAVVLRDL---IMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLA 697
Q ++ +V++ L + P+LLRR+KADV L K E ++ +T+ Q Y++ L
Sbjct: 375 QNNSEQDQEIVIQQLHSVLNPFLLRRVKADVEKSLLPKIETNVYVGMTDMQIQWYKSLL- 433
Query: 698 SSEVEQI------LDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPER----SEK 747
+++ + +G L + +RK CNHP L E + P Y E S K
Sbjct: 434 EKDIDAVNGAVGKREGKTRLLNIVMQLRKCCNHPYLFEGAEPG--PPYTTDEHLIFNSGK 491
Query: 748 MKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDE 807
M ++ ++LK K++G RVL+F+Q ++LDILE + +EY R+DG T ++R+ IDE
Sbjct: 492 MIILDKLLKRLKEKGSRVLIFSQMSRLLDILEDYCYFRDFEYCRIDGSTSHEERIEAIDE 551
Query: 808 YNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866
YN +S+ F+F+LTT+ GGLG NL A+ VI+FD DWNP D+QA +RA RIGQK+ V V
Sbjct: 552 YNKPNSEKFVFLLTTRAGGLGINLVTADTVILFDSDWNPQADLQAMDRAHRIGQKKQVHV 611
Query: 867 YRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKD 910
YR +T IEEKV R K L +++ ++ N KD
Sbjct: 612 YRFVTENAIEEKVIERAAQKLRLDQLVIQQGTGKKTASLGNSKD 655
>sp|P41410|RAD54_SCHPO DNA repair protein rhp54 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rhp54 PE=1 SV=2
Length = 852
Score = 293 bits (750), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 208/644 (32%), Positives = 320/644 (49%), Gaps = 76/644 (11%)
Query: 329 KRKKKRPLPDKKWRKRIAREDTRLEENEDSRDSLD-MSSYEEEKQEDDEDSDNNEPPFVT 387
KRKK L ++K +K I+ D+ E + DS S D ++S E+ ++ + P +
Sbjct: 178 KRKKDELLKNRKGKKEIS--DSEPESDHDSCVSTDTVASCSTEQSLITSNTSKHRRPNKS 235
Query: 388 LEGGLKIPE--------------SIFNNLFDYQKVGVQWLWELHCQRA-----GGIIGDE 428
L+ L I + + L +Q GV++L++ R G I+ DE
Sbjct: 236 LKDLLGIQKEKPPPPPVAVVIDPKLARILRPHQIEGVKFLYKCVTGRIDRCANGCIMADE 295
Query: 429 MGLGKTIQVLSFLGAL--HFSNMYKPSI----VVCPVTLLRQWKREAEKWYPSFHVELLH 482
MGLGKT+Q ++ L L KP+I + CP +L++ W E KW L
Sbjct: 296 MGLGKTLQCIALLWTLLKQSPQAGKPTIEKAIITCPSSLVKNWANELVKW-------LGK 348
Query: 483 DSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITT 542
D+ DG+ S ++W + R + +LI +
Sbjct: 349 DAITPFIL------------DGKSSKQELIMA------LQQWASVHGR--QVTRPVLIAS 388
Query: 543 YEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSE 602
YE LR E L + E G + DEGHR++N ++ +L R+I++G PIQN LSE
Sbjct: 389 YETLRSYVEHLNNAEIGMLLCDEGHRLKNSDSLTFTALDKLNVQRRVILSGTPIQNDLSE 448
Query: 603 LWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLR 662
+SL +F PG LG F + +PI G A+ + L ++ +++R
Sbjct: 449 YFSLLNFANPGLLGSRQEFRKNYEIPILKGRDADGTEKDKENGDAKLAELAKIVNRFIIR 508
Query: 663 RMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGS-RNSLYGIDVMRKI 721
R ++ LP K EHV+FC+L+E Q ++Y+ F+ S E+ +IL G+ L I +++KI
Sbjct: 509 RTNDILSKYLPVKYEHVVFCNLSEFQLSLYKHFITSPEINKILRGTGSQPLKAIGLLKKI 568
Query: 722 CNHPDLL---EREQSCQ--IPDYGNPER------------SEKMKVVAQVL-KVWKDQGH 763
CNHPDLL E + C+ P P S KM V+ ++L ++ ++
Sbjct: 569 CNHPDLLNLTEDLEGCEALFPPGFIPRELRGRDRNIDSSLSGKMLVLERMLYQIKQETDD 628
Query: 764 RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTK 822
+++L + LD+ E A GY+ R+DG V +R L+D +N+ D F+F+L++K
Sbjct: 629 KIVLISNYTSTLDLFEQLCRARGYKALRLDGTMNVNKRQRLVDTFNDPEKDAFVFLLSSK 688
Query: 823 VGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHR 882
GG G NL GANR+I+FDPDWNP+ D QA R WR GQK+D VYR I GTIEEK++ R
Sbjct: 689 AGGCGINLIGANRLILFDPDWNPAADQQALARVWRDGQKKDCFVYRFIATGTIEEKIFQR 748
Query: 883 QIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLNDDGNGGSTET 925
Q +K L++ ++ Q R F N++ LF LND + ET
Sbjct: 749 QSHKQSLSSCVVDEAQDVERHFSLDNLRQLFQLNDHTVCETHET 792
>sp|Q9DG67|RA54B_CHICK DNA repair and recombination protein RAD54B OS=Gallus gallus
GN=RAD54B PE=2 SV=1
Length = 918
Score = 290 bits (742), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 187/569 (32%), Positives = 291/569 (51%), Gaps = 87/569 (15%)
Query: 398 IFNNLFDYQKVGVQWLWELHC-------QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMY 450
I NNL +Q+ G+ +L+E C R G I+ DEMGLGKT+Q +S + L +Y
Sbjct: 299 IANNLRPHQREGIVFLYE--CVMGMRVSGRFGAILADEMGLGKTLQCISLVWTLLRQGVY 356
Query: 451 ------KPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDG 504
K +++V P +L++ WK+E +KW LG + + + D D+
Sbjct: 357 GCKPVLKRALIVTPGSLVKNWKKEFQKW---------------LGSERIKVFTVDQDH-- 399
Query: 505 EGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLD 564
K + I+ L S ++I +YE L +++ +E+ + D
Sbjct: 400 ------------------KVEEFISSPLYS---VMIISYEMLLRSLDQIQAIEFNLLICD 438
Query: 565 EGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAE 624
EGHR++N + + + L RII+TG PIQN L E ++L +FV PG LG L +
Sbjct: 439 EGHRLKNSSIKTTTALTNLSCERRIILTGTPIQNDLQEFYALIEFVNPGVLGSLSTYRKI 498
Query: 625 FAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSL 684
+ PI +A+ + + A L L ++LRR + +N LP K E+++FC
Sbjct: 499 YEEPIVRSREPSATKEEKDLGEKRAAELTRLTGLFILRRTQEVINKFLPPKKENIIFCQP 558
Query: 685 TEEQRAVYRAFLASSEVEQILDGS-RNS--LYGIDVMRKICNHPDLLER--EQSCQIP-- 737
T Q +YR L+S + L G NS L I ++K+CNHP LL + ++ C P
Sbjct: 559 TALQLELYRKLLSSRVISSCLQGRLENSPHLICIGALKKLCNHPCLLFKALKEKCCDPKS 618
Query: 738 ------------------DYGNPERSE----KMKVVAQVLKVWKD--QGHRVLLFAQTQQ 773
DY + SE K++V+ ++L ++ RV+L + Q
Sbjct: 619 DEHVESSLYEGLTDVFPQDYTSDTFSEIDSGKLQVLVKLLAAIRELSSSERVVLVSNYTQ 678
Query: 774 MLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNS-SDVFIFILTTKVGGLGTNLTG 832
L++L GY Y R+DG TPV QR ++D +N+ S FIF+L++K GG+G NL G
Sbjct: 679 TLNVLLETCKCYGYSYTRLDGNTPVSQRQQIVDSFNSKFSPAFIFLLSSKAGGVGLNLVG 738
Query: 833 ANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNK 892
A+ +I++D DWNP+TD+QA R WR GQK V +YRL+T GTIEEK+Y RQI K L+
Sbjct: 739 ASHLILYDIDWNPATDIQAMARVWRDGQKCTVHIYRLLTTGTIEEKIYQRQISKQDLSGA 798
Query: 893 I--LKNPQQRRFFKARNMKDLFTLNDDGN 919
+ L + F +++LFTL+++ +
Sbjct: 799 VVDLSKTSEHIHFSVEELRNLFTLHENSS 827
>sp|Q6PFE3|RA54B_MOUSE DNA repair and recombination protein RAD54B OS=Mus musculus
GN=Rad54b PE=2 SV=1
Length = 886
Score = 286 bits (732), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 190/596 (31%), Positives = 293/596 (49%), Gaps = 93/596 (15%)
Query: 398 IFNNLFDYQKVGVQWLWEL-----HCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMY-- 450
+ ++L +QK G+ +L+E + G I+ DEMGLGKT+Q +S + L Y
Sbjct: 270 LVHHLRPHQKDGIIFLYECVMGMRAVGKCGAILADEMGLGKTLQCISLIWTLQCQGPYGG 329
Query: 451 ----KPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEG 506
K +++V P +L+ W++E +KW LG + + + D D+
Sbjct: 330 KPVIKKTLIVTPGSLVNNWRKEFQKW---------------LGSERIKIFTVDQDH---- 370
Query: 507 SHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEG 566
K + IN S +LI +YE L +++ + +G + DEG
Sbjct: 371 ----------------KVEEFINSTFHS---VLIISYEMLLRSLDQIKTIPFGLLICDEG 411
Query: 567 HRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFA 626
HR++N + + + L +I+TG P+QN L E ++L DFV PG LG L + +
Sbjct: 412 HRLKNSSIKTTTALSSLSCEKTVILTGTPVQNDLQEFFALVDFVNPGILGSLSSYRKIYE 471
Query: 627 VPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTE 686
PI + ++S + R A L L ++LRR + +N LP K E+V+FC
Sbjct: 472 EPIIISREPSSSKEERELGERRATELTRLTGRFILRRTQEVINKYLPPKIENVVFCRPGA 531
Query: 687 EQRAVYRAFLASSEVEQILDG---SRNSLYGIDVMRKICNHPDLL-------EREQSCQ- 735
Q +YR L S V L G + L I ++K+CNHP LL E SC+
Sbjct: 532 LQIELYRKLLRSQSVRFCLQGLLENSAHLICIGALKKLCNHPCLLFSSVKGKEFSSSCEE 591
Query: 736 -------------IPDYGNP-----ERSEKMKVVAQVLKVWKD--QGHRVLLFAQTQQML 775
P NP E S K++V+ ++L V + +V+L + +Q L
Sbjct: 592 NEERNLCQGLLSVFPAGYNPLQFSEEESGKLQVLVKLLAVIHELRPTEKVILVSNYRQTL 651
Query: 776 DILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN--SSDVFIFILTTKVGGLGTNLTGA 833
++LE GY R+DG TPV QR ++D +N+ S+D FIF+L++K GG+G NL G
Sbjct: 652 NVLEEVCKRHGYACARLDGQTPVSQRQHIVDSFNSKYSTD-FIFLLSSKAGGVGLNLIGG 710
Query: 834 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKI 893
+ +I++D DWNP+TD+QA R WR GQK V +YRL+T GTIEEK+Y RQI K L+ +
Sbjct: 711 SHLILYDIDWNPATDIQAMSRVWRDGQKHPVHIYRLLTTGTIEEKIYQRQISKQGLSGAV 770
Query: 894 --LKNPQQRRFFKARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVNVVGDQKDKED 947
L + F +K+LFTL+ E+S+ + D G++ ED
Sbjct: 771 VDLTRSSEHIQFSVEELKNLFTLH--------ESSHCVTHDLLDCECTGEKGHTED 818
>sp|Q6PGB8|SMCA1_MOUSE Probable global transcription activator SNF2L1 OS=Mus musculus
GN=Smarca1 PE=1 SV=1
Length = 1046
Score = 285 bits (729), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 173/491 (35%), Positives = 256/491 (52%), Gaps = 60/491 (12%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL L+ GI+ DEMGLGKT+Q ++ LG L H+ N+ P +V+ P +
Sbjct: 187 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 246
Query: 461 LLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
L W E ++W PS V +G D D + D
Sbjct: 247 TLHNWMNEFKRWVPSLRVICF------VG-----------DKDVRAAFIRD------EMM 283
Query: 521 PKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVC 580
P +WD+ + T+YE + W Y V+DE HRI+N +++S +
Sbjct: 284 PGEWDVCV------------TSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIV 331
Query: 581 KQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPL 640
++ ++ +R+++TG P+QN L ELW+L +F+ P F++ F +G
Sbjct: 332 REFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQ------ 385
Query: 641 QVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSE 700
R VL+ P+LLRR+K DV LP K E ++ L++ QR Y L
Sbjct: 386 --KLVERLHAVLK----PFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDI 439
Query: 701 VEQILDGSRNSLYGIDVM---RKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQ 753
G + + ++++ RK CNHP L + + P Y E S KM + +
Sbjct: 440 DVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG--PPYTTDEHIVGNSGKMVALDK 497
Query: 754 VLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYN--NS 811
+L K+QG RVL+F+Q ++LDILE + + GYEY R+DG TP ++R ID +N NS
Sbjct: 498 LLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAFNAPNS 557
Query: 812 SDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLIT 871
S FIF+L+T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQK+ V V+RLIT
Sbjct: 558 SK-FIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLIT 616
Query: 872 RGTIEEKVYHR 882
T+EE++ R
Sbjct: 617 DNTVEERIVER 627
>sp|P22082|SNF2_YEAST Transcription regulatory protein SNF2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SNF2 PE=1 SV=1
Length = 1703
Score = 285 bits (728), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 169/513 (32%), Positives = 261/513 (50%), Gaps = 61/513 (11%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH-FSNMYKPSIVVCPVT 460
L DYQ G+QW+ L GI+ DEMGLGKTIQ +S L L+ N+ P +V+ P++
Sbjct: 767 LKDYQIKGLQWMVSLFNNHLNGILADEMGLGKTIQTISLLTYLYEMKNIRGPYLVIVPLS 826
Query: 461 LLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
L W E KW P+ ++G+ + R
Sbjct: 827 TLSNWSSEFAKWAPTLRT-------------------------------ISFKGSPNERK 855
Query: 521 PKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVC 580
K+ ++ E +++TT+E + L V+W + ++DEGHR++N +++SL
Sbjct: 856 AKQA-----KIRAGEFDVVLTTFEYIIKERALLSKVKWVHMIIDEGHRMKNAQSKLSLTL 910
Query: 581 K-QLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASP 639
+R+I+TG P+QN L ELW+L +FV P + F+ F P G +
Sbjct: 911 NTHYHADYRLILTGTPLQNNLPELWALLNFVLPKIFNSVKSFDEWFNTPFANTGGQDKIE 970
Query: 640 LQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVY------- 692
L L ++ P+LLRR+K DV +LP K E V+ C ++ Q+ +Y
Sbjct: 971 LSEEETLLVIRRLHKVLRPFLLRRLKKDVEKELPDKVEKVVKCKMSALQQIMYQQMLKYR 1030
Query: 693 RAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPER-------- 744
R F+ ++++ G R I ++KICNHP + E ++ D NP R
Sbjct: 1031 RLFIGDQNNKKMV-GLRGFNNQIMQLKKICNHPFVFE-----EVEDQINPTRETNDDIWR 1084
Query: 745 -SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMA 803
+ K +++ ++L K GHRVL+F Q Q++DI+E FL +Y R+DG T +R
Sbjct: 1085 VAGKFELLDRILPKLKATGHRVLIFFQMTQIMDIMEDFLRYINIKYLRLDGHTKSDERSE 1144
Query: 804 LIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQ 862
L+ +N S+ FIL+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RIGQK
Sbjct: 1145 LLRLFNAPDSEYLCFILSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKN 1204
Query: 863 DVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
+V + RLIT ++EE + R K + K+++
Sbjct: 1205 EVRILRLITTNSVEEVILERAYKKLDIDGKVIQ 1237
>sp|O14647|CHD2_HUMAN Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens GN=CHD2
PE=1 SV=2
Length = 1828
Score = 284 bits (727), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 172/507 (33%), Positives = 267/507 (52%), Gaps = 62/507 (12%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL C+ I+ DEMGLGKTIQ +SFL L H +Y P ++V P++
Sbjct: 484 LRDYQLEGLNWLAHSWCKNNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIVVPLS 543
Query: 461 LLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
L W+RE E W P +V + Y G+L SRN
Sbjct: 544 TLTSWQREFEIWAPEINVVV-------------------------------YIGDLMSRN 572
Query: 521 P-KKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLV 579
++++ + ++ R + LITTYE L L + W + +DE HR++N ++ +
Sbjct: 573 TIREYEWIHSQTKRLKFNALITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKT 632
Query: 580 CKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASP 639
++ HR+++TG P+QN L ELWSL F+ P K FE + G N
Sbjct: 633 LIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFEFWEDFEEDHG-----KGRENG-- 685
Query: 640 LQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASS 699
Y+ L ++ P+LLRR+K DV LP K E +L ++ Q+ Y+ L +
Sbjct: 686 ------YQS---LHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEMSALQKQYYKWILTRN 736
Query: 700 EVEQILDGSRNSLYG----IDVMRKICNH------PDLLEREQSCQIPDYGNPERSEKMK 749
+ + G+R S G + ++K CNH P+ ERE +I S K+
Sbjct: 737 -YKALAKGTRGSTSGFLNIVMELKKCCNHCYLIKPPEENERENGQEIL-LSLIRSSGKLI 794
Query: 750 VVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYN 809
++ ++L +++G+RVL+F+Q +MLDIL +L Y ++R+DG + R +D +N
Sbjct: 795 LLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFN 854
Query: 810 -NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYR 868
+ S+ F F+L+T+ GGLG NL A+ V+IFD DWNP D+QA+ RA RIGQK+ V +YR
Sbjct: 855 ADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYR 914
Query: 869 LITRGTIEEKVYHRQIYKHFLTNKILK 895
L+T+GT+EE++ R K L + +++
Sbjct: 915 LVTKGTVEEEIIERAKKKMVLDHLVIQ 941
>sp|P41877|ISW1_CAEEL Chromatin-remodeling complex ATPase chain isw-1 OS=Caenorhabditis
elegans GN=isw-1 PE=1 SV=2
Length = 1009
Score = 284 bits (726), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 177/512 (34%), Positives = 273/512 (53%), Gaps = 61/512 (11%)
Query: 404 DYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVTLL 462
DYQ G+ WL L + GI+ DEMGLGKT+Q +S +G + H+ N P +V+ P + L
Sbjct: 134 DYQVRGLNWLASLQHNKINGILADEMGLGKTLQTISMIGYMKHYKNKASPHLVIVPKSTL 193
Query: 463 RQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPK 522
+ W E +KW PS + +L G+ ++RN
Sbjct: 194 QNWANEFKKWCPSINAVVLI-------------------------------GDEAARN-- 220
Query: 523 KWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQ 582
+L + +L + + TTYE + + +L + W Y ++DE HRI+N +++S ++
Sbjct: 221 --QVLRDVILPQKFDVCCTTYEMMLKVKTQLKKLNWRYIIIDEAHRIKNEKSKLSETVRE 278
Query: 583 LQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQV 642
L + +R+++TG P+QN L ELW+L +F+ P F++ F+ G N +Q
Sbjct: 279 LNSENRLLITGTPLQNNLHELWALLNFLLPDIFTSSDDFDSWFSNDAMSG---NTDLVQR 335
Query: 643 STAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVE 702
L ++ P+LLRR+K+DV L K E ++ L++ QR Y L
Sbjct: 336 ---------LHKVLQPFLLRRIKSDVEKSLLPKKEVKVYVGLSKMQREWYTKVLMKDI-- 384
Query: 703 QILDGS----RNSLYGIDV-MRKICNHPDLLEREQSCQ--IPDYGNPERSEKMKVVAQVL 755
I++G+ + L I + +RK NHP L + + D + S KM V+ ++L
Sbjct: 385 DIINGAGKVEKARLMNILMHLRKCVNHPYLFDGAEPGPPFTTDQHLVDNSGKMVVLDKLL 444
Query: 756 KVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDV 814
+K+QG RVL+F+Q +MLD+LE F YEY R+DG TP + R I+ YN S
Sbjct: 445 MKFKEQGSRVLIFSQFSRMLDLLEDFCWWRHYEYCRLDGSTPHEDRSNAIEAYNAPDSKK 504
Query: 815 FIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGT 874
FIF+LTT+ GGLG NL A+ VII+D DWNP +D+QA +RA RIGQK+ V V+RLIT T
Sbjct: 505 FIFMLTTRAGGLGINLATADVVIIYDSDWNPQSDLQAMDRAHRIGQKKQVRVFRLITENT 564
Query: 875 IEEKVYHRQIYKHFLTNKILKNPQQRRFFKAR 906
++E++ + K L N ++ QQ R +A+
Sbjct: 565 VDERIIEKAEAKLRLDNIVI---QQGRMSEAQ 593
>sp|Q91ZW3|SMCA5_MOUSE SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A member 5 OS=Mus musculus
GN=Smarca5 PE=1 SV=1
Length = 1051
Score = 283 bits (724), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 174/496 (35%), Positives = 257/496 (51%), Gaps = 64/496 (12%)
Query: 399 FNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVC 457
+ L DYQ G+ WL L+ GI+ DEMGLGKT+Q +S LG + H+ N+ P +V+
Sbjct: 176 WGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLV 235
Query: 458 PVTLLRQWKREAEKWYPSFH-VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNL 516
P + L W E +KW P+ V L+ D Q F +
Sbjct: 236 PKSTLHNWMSEFKKWVPTLRSVCLIGDKEQRAAFVR------------------------ 271
Query: 517 SSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEI 576
P +WD+ + T+YE L W Y V+DE HRI+N +++
Sbjct: 272 DVLLPGEWDVCV------------TSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKL 319
Query: 577 SLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYAN 636
S + ++ +T +R+++TG P+QN L ELWSL +F+ P F++ F +G
Sbjct: 320 SEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQ-- 377
Query: 637 ASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFL 696
R +VLR P+LLRR+KADV LP K E ++ L++ QR Y L
Sbjct: 378 ------KLVERLHMVLR----PFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRIL 427
Query: 697 ASSEVEQILD--GSRNSLYGIDVM---RKICNHPDLLEREQSCQIPDYGNP----ERSEK 747
IL+ G + + ++++ RK CNHP L + + P Y S K
Sbjct: 428 MKDI--DILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG--PPYTTDMHLVTNSGK 483
Query: 748 MKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDE 807
M V+ ++L K+QG RVL+F+Q ++LDILE + + YEY R+DG TP +R I+
Sbjct: 484 MVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINA 543
Query: 808 YNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866
YN +S F+F+L+T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQ + V V
Sbjct: 544 YNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRV 603
Query: 867 YRLITRGTIEEKVYHR 882
+R IT T+EE++ R
Sbjct: 604 FRFITDNTVEERIVER 619
>sp|O60264|SMCA5_HUMAN SWI/SNF-related matrix-associated actin-dependent regulator of
chromatin subfamily A member 5 OS=Homo sapiens
GN=SMARCA5 PE=1 SV=1
Length = 1052
Score = 283 bits (723), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 173/496 (34%), Positives = 257/496 (51%), Gaps = 64/496 (12%)
Query: 399 FNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVC 457
+ L DYQ G+ WL L+ GI+ DEMGLGKT+Q +S LG + H+ N+ P +V+
Sbjct: 177 WGKLRDYQVRGLNWLISLYENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLV 236
Query: 458 PVTLLRQWKREAEKWYPSFH-VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNL 516
P + L W E ++W P+ V L+ D Q F +
Sbjct: 237 PKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVR------------------------ 272
Query: 517 SSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEI 576
P +WD+ + T+YE L W Y V+DE HRI+N +++
Sbjct: 273 DVLLPGEWDVCV------------TSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKL 320
Query: 577 SLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYAN 636
S + ++ +T +R+++TG P+QN L ELWSL +F+ P F++ F +G
Sbjct: 321 SEIVREFKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQ-- 378
Query: 637 ASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFL 696
R +VLR P+LLRR+KADV LP K E ++ L++ QR Y L
Sbjct: 379 ------KLVERLHMVLR----PFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRIL 428
Query: 697 ASSEVEQILD--GSRNSLYGIDVM---RKICNHPDLLEREQSCQIPDYGNP----ERSEK 747
IL+ G + + ++++ RK CNHP L + + P Y S K
Sbjct: 429 MKDI--DILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG--PPYTTDMHLVTNSGK 484
Query: 748 MKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDE 807
M V+ ++L K+QG RVL+F+Q ++LDILE + + YEY R+DG TP +R I+
Sbjct: 485 MVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINA 544
Query: 808 YNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866
YN +S F+F+L+T+ GGLG NL A+ VI++D DWNP D+QA +RA RIGQ + V V
Sbjct: 545 YNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRV 604
Query: 867 YRLITRGTIEEKVYHR 882
+R IT T+EE++ R
Sbjct: 605 FRFITDNTVEERIVER 620
>sp|P32597|STH1_YEAST Nuclear protein STH1/NPS1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=STH1 PE=1 SV=1
Length = 1359
Score = 283 bits (723), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 167/508 (32%), Positives = 259/508 (50%), Gaps = 50/508 (9%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH-FSNMYKPSIVVCPVT 460
L +YQ G++W+ L+ GI+ DEMGLGKTIQ +S + L+ P +V+ P++
Sbjct: 470 LKEYQLRGLEWMVSLYNNHLNGILADEMGLGKTIQSISLITYLYEVKKDIGPFLVIVPLS 529
Query: 461 LLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
+ W E EKW PS + + Y+G + R+
Sbjct: 530 TITNWTLEFEKWAPSLNTII-------------------------------YKGTPNQRH 558
Query: 521 PKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISL-V 579
L +++ +L+TTYE + L +W + ++DEGHR++N +++S +
Sbjct: 559 S-----LQHQIRVGNFDVLLTTYEYIIKDKSLLSKHDWAHMIIDEGHRMKNAQSKLSFTI 613
Query: 580 CKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASP 639
+T +R+I+TG P+QN L ELW+L +FV P FE F P G
Sbjct: 614 SHYYRTRNRLILTGTPLQNNLPELWALLNFVLPKIFNSAKTFEDWFNTPFANTGTQEKLE 673
Query: 640 LQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLT------EEQRAVYR 693
L L ++ P+LLRR+K +V LP K E V+ C L+ +Q +
Sbjct: 674 LTEEETLLIIRRLHKVLRPFLLRRLKKEVEKDLPDKVEKVIKCKLSGLQQQLYQQMLKHN 733
Query: 694 AFLASSEVEQILDGSRNSLYG-IDVMRKICNHPDLLEREQSCQIPDYGNPER----SEKM 748
A + E G L I +RKICNHP + + + P GN + + K
Sbjct: 734 ALFVGAGTEGATKGGIKGLNNKIMQLRKICNHPFVFDEVEGVVNPSRGNSDLLFRVAGKF 793
Query: 749 KVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEY 808
+++ +VL +K GHRVL+F Q Q++DI+E FL +Y R+DG T ++R +++ +
Sbjct: 794 ELLDRVLPKFKASGHRVLMFFQMTQVMDIMEDFLRMKDLKYMRLDGSTKTEERTEMLNAF 853
Query: 809 NN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVY 867
N SD F F+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RIGQK +V +
Sbjct: 854 NAPDSDYFCFLLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQKNEVRIL 913
Query: 868 RLITRGTIEEKVYHRQIYKHFLTNKILK 895
RLIT ++EE + R + K + K+++
Sbjct: 914 RLITTDSVEEVILERAMQKLDIDGKVIQ 941
>sp|O94421|SNF22_SCHPO SWI/SNF chromatin-remodeling complex subunit snf22
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=snf22 PE=1 SV=2
Length = 1680
Score = 281 bits (719), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 168/508 (33%), Positives = 268/508 (52%), Gaps = 53/508 (10%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G++W+ L+ GI+ DEMGLGKTIQ ++F+ L N P +++ P++
Sbjct: 869 LKDYQLKGLEWMLSLYNNNLNGILADEMGLGKTIQTIAFITYLIEKKNQQGPFLIIVPLS 928
Query: 461 LLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
L W E EKW PS KK A Y+G
Sbjct: 929 TLTNWIMEFEKWAPSV---------------KKIA----------------YKGP----- 952
Query: 521 PKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEI-SLV 579
P+ L +++ S +L+TT+E + L ++W + ++DEGHRI+N +++ S +
Sbjct: 953 PQLRKTLQSQIRSSNFNVLLTTFEYIIKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTSTL 1012
Query: 580 CKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASP 639
+ +R+I+TG P+QN L ELW+L +FV P + F+ F P G +
Sbjct: 1013 STYYHSQYRLILTGTPLQNNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTGGQDKIG 1072
Query: 640 LQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRA----- 694
L A L ++ P+L RR+K DV +LP K E V+ C L+ Q +Y+
Sbjct: 1073 LNEEEALLIIKRLHKVLRPFLFRRLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQMKKHG 1132
Query: 695 --FLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPE----RSEKM 748
F+ + + + G +N++ ++KICNHP + E + P N + + K
Sbjct: 1133 MLFVDGEKGKTGIKGLQNTVMQ---LKKICNHPFIFEDVERAIDPSGTNVDLLWRAAGKF 1189
Query: 749 KVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEY 808
+++ ++L GH+ L+F Q Q++ I+E +L + ++Y R+DG T R +L+ ++
Sbjct: 1190 ELLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQF 1249
Query: 809 NNS-SDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVY 867
N+ SDV+IF+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RIGQ ++V +
Sbjct: 1250 NDPKSDVYIFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRIL 1309
Query: 868 RLITRGTIEEKVYHRQIYKHFLTNKILK 895
RLIT +IEE + R YK L K+++
Sbjct: 1310 RLITEKSIEENILSRAQYKLDLDGKVIQ 1337
>sp|Q9Y620|RA54B_HUMAN DNA repair and recombination protein RAD54B OS=Homo sapiens
GN=RAD54B PE=1 SV=1
Length = 910
Score = 281 bits (718), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 191/568 (33%), Positives = 283/568 (49%), Gaps = 97/568 (17%)
Query: 401 NLFDYQKVGVQWLWELHC-------QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMY--- 450
+L +QK G+ +L+E C R G I+ DEMGLGKT+Q +S + L Y
Sbjct: 295 HLRPHQKEGIIFLYE--CVMGMRMNGRCGAILADEMGLGKTLQCISLIWTLQCQGPYGGK 352
Query: 451 ---KPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGS 507
K +++V P +L+ WK+E +KW S +R K D D
Sbjct: 353 PVIKKTLIVTPGSLVNNWKKEFQKWLGS-----------------ERIKIFTVDQD---- 391
Query: 508 HDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGH 567
K + I + S +LI +YE L +++ ++++ + DEGH
Sbjct: 392 --------------HKVEEFIKSIFYS---VLIISYEMLLRSLDQIKNIKFDLLICDEGH 434
Query: 568 RIRN-----PNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFE 622
R++N A ISL C++ RII+TG PIQN L E ++L DFV PG LG L +
Sbjct: 435 RLKNSAIKTTTALISLSCEK-----RIILTGTPIQNDLQEFFALIDFVNPGILGSLSSYR 489
Query: 623 AEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFC 682
+ PI + +AS + R A L L ++LRR + +N LP K E+V+FC
Sbjct: 490 KIYEEPIILSREPSASEEEKELGERRAAELTCLTGLFILRRTQEIINKYLPPKIENVVFC 549
Query: 683 SLTEEQRAVYRAFLASSEVEQILDG---SRNSLYGIDVMRKICNHPDLLE---REQSCQ- 735
Q +YR L S V L G + L I ++K+CNHP LL +E+ C
Sbjct: 550 RPGALQIELYRKLLNSQVVRFCLQGLLENSPHLICIGALKKLCNHPCLLFNSIKEKECSS 609
Query: 736 -----------------IPDYGNP-----ERSEKMKVVAQVLKVWKD--QGHRVLLFAQT 771
P NP + S K++V++++L V + +V+L +
Sbjct: 610 TCDKNEEKSLYKGLLSVFPADYNPLLFTEKESGKLQVLSKLLAVIHELRPTEKVVLVSNY 669
Query: 772 QQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNS-SDVFIFILTTKVGGLGTNL 830
Q L+IL+ GY Y R+DG TP+ QR ++D +N+ S FIF+L++K GG+G NL
Sbjct: 670 TQTLNILQEVCKRHGYAYTRLDGQTPISQRQQIVDGFNSQHSSFFIFLLSSKAGGVGLNL 729
Query: 831 TGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLT 890
G + +I++D DWNP+TD+QA R WR GQK V +YRL+T GTIEEK+Y RQI K L
Sbjct: 730 IGGSHLILYDIDWNPATDIQAMSRVWRDGQKYPVHIYRLLTTGTIEEKIYQRQISKQGLC 789
Query: 891 NKI--LKNPQQRRFFKARNMKDLFTLND 916
+ L + F +K+LFTL++
Sbjct: 790 GAVVDLTKTSEHIQFSVEELKNLFTLHE 817
>sp|O12944|RAD54_CHICK DNA repair and recombination protein RAD54-like (Fragment)
OS=Gallus gallus GN=RAD54L PE=2 SV=1
Length = 733
Score = 280 bits (717), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 197/577 (34%), Positives = 288/577 (49%), Gaps = 71/577 (12%)
Query: 382 EPPFVTLEGGLKI-----------PESIFNNLFDYQKVGVQWLWELHCQR-----AGGII 425
EPP ++ LKI + L +Q+ GV++LW+ R G I+
Sbjct: 111 EPPLLSAHEQLKIDKDKVPVHVVVDPVLSRVLRPHQREGVKFLWDCVTSRRIPGSHGCIM 170
Query: 426 GDEMGLGKTIQVLSFLGAL-HFSNMYKPSI----VVCPVTLLRQWKREAEKWYPSFHVEL 480
DEMGLGKT+Q ++ + L S KP I VV P +L+R W E EKW
Sbjct: 171 ADEMGLGKTLQCITLMWTLLRQSPDCKPEIEKAMVVSPSSLVRNWYNEVEKW-------- 222
Query: 481 LHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLI 540
LG R + D + D G+++ R LR S +LI
Sbjct: 223 -------LG---GRIQPLAIDGGSKEEIDRKLVGSMNQRG-----------LRVPSPILI 261
Query: 541 TTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKL 600
+YE RL E L G + DEGHR++N + L T R++++G PIQN L
Sbjct: 262 ISYETFRLHAEALQKGSVGLVICDEGHRLKNSENQTYQALNSLNTPRRVLISGTPIQNDL 321
Query: 601 SELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYL 660
E +SL FV G LG F+ F +PI G A+AS + L ++ L
Sbjct: 322 LEYFSLVHFVNSGILGTAQEFKRHFELPILKGRDADASEAERQKGEERLKELISIVNRCL 381
Query: 661 LRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSE-VEQILDGSRN--SLYGIDV 717
+RR ++ LP K E V+ C LT Q +Y+ FL ++ VE++ +G N SL I
Sbjct: 382 IRRTSDILSKYLPVKIEQVVCCRLTPLQAELYKNFLKQAKPVEELKEGKINVSSLSSITS 441
Query: 718 MRKICNHPDLL-----EREQSCQ-----IP-DYGN----PERSEKMKVVAQVLKVWKDQG 762
++K+CNHP L+ E E+ P Y P+ S KM V+ +L V K
Sbjct: 442 LKKLCNHPALIYDKCVEEEEGFMGALDLFPAGYSTKSVEPQLSGKMLVLDYILAVTKSTS 501
Query: 763 H-RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILT 820
+ +V+L + Q LD+ E Y Y R+DG +K+R +++ +N+ SS FIF+L+
Sbjct: 502 NDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKVVERFNSPSSPEFIFMLS 561
Query: 821 TKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVY 880
+K GG G NL GANR+++FDPDWNP+ D QA R WR GQK+ +YRL++ GTIEEK++
Sbjct: 562 SKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKIF 621
Query: 881 HRQIYKHFLTNKILKNPQQ-RRFFKARNMKDLFTLND 916
RQ +K L++ ++ Q R F +K+LF+LN+
Sbjct: 622 QRQTHKKALSSCVVDEEQDVERHFSLGELKELFSLNE 658
>sp|O14981|BTAF1_HUMAN TATA-binding protein-associated factor 172 OS=Homo sapiens GN=BTAF1
PE=1 SV=2
Length = 1849
Score = 280 bits (717), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 193/596 (32%), Positives = 281/596 (47%), Gaps = 100/596 (16%)
Query: 393 KIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN---- 448
KIP I L YQ+ GV WL L+ + GI+ D+MGLGKT+Q + L H
Sbjct: 1257 KIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQSICILAGDHCHRAQEY 1316
Query: 449 --------MYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDT 500
M PS+VVCP TL W E K+ ++ LH
Sbjct: 1317 ARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLNPLH------------------ 1358
Query: 501 DNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGY 560
Y G P + L ++V R L++ +Y+ +R + ++++ Y
Sbjct: 1359 -----------YTGP-----PTERIRLQHQVKRH--NLIVASYDVVRNDIDFFRNIKFNY 1400
Query: 561 AVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPV 620
+LDEGH I+N ++S KQL +RII++G PIQN + ELWSLFDF+ PG LG
Sbjct: 1401 CILDEGHVIKNGKTKLSKAVKQLTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQ 1460
Query: 621 FEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVL 680
F A + PI A +S + L ++P+LLRRMK DV LP K
Sbjct: 1461 FAARYGKPILASRDARSSSREQEAGVLAMDALHRQVLPFLLRRMKEDVLQDLPPKIIQDY 1520
Query: 681 FCSLTEEQRAVYRAFL---ASSEVEQI--------------LDGSRNSLYGIDVMRKICN 723
+C+L+ Q +Y F A +V++ L + + + +RK+CN
Sbjct: 1521 YCTLSPLQVQLYEDFAKSRAKCDVDETVSSATLSEETEKPKLKATGHVFQALQYLRKLCN 1580
Query: 724 HPDLLEREQ-----------SCQIPDYGNPERSEKMKVVAQVLKVWKDQG---------- 762
HP L+ Q + Q + + + K+ + Q+L D G
Sbjct: 1581 HPALVLTPQHPEFKTTAEKLAVQNSSLHDIQHAPKLSALKQLLL---DCGLGNGSTSESG 1637
Query: 763 -------HRVLLFAQTQQMLDILESFLI---ASGYEYRRMDGLTPVKQRMALIDEYNNSS 812
HR+L+F Q + MLDI+E L+ Y R+DG P QR +++ +NN
Sbjct: 1638 TESVVAQHRILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDP 1697
Query: 813 DVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITR 872
+ + +LTT VGGLG NLTGA+ V+ + DWNP D+QA +RA RIGQK+ V VYRLITR
Sbjct: 1698 SIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITR 1757
Query: 873 GTIEEKVYHRQIYKHFLTNKILKNPQQR-RFFKARNMKDLFTLNDDGNGGSTETSN 927
GT+EEK+ Q +K + N ++ + + DLFTL+ DG +TS
Sbjct: 1758 GTLEEKIMGLQKFKMNIANTVISQENSSLQSMGTDQLLDLFTLDKDGKAEKADTST 1813
>sp|O43065|MOT1_SCHPO Probable helicase mot1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=mot1 PE=1 SV=4
Length = 1953
Score = 279 bits (714), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 176/563 (31%), Positives = 275/563 (48%), Gaps = 113/563 (20%)
Query: 391 GLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM- 449
IP I +L YQ+ GV WL L+ GI+ D+MGLGKT+Q + + + H++
Sbjct: 1347 AFSIPVPISADLRKYQQEGVNWLAFLNKYELHGILCDDMGLGKTLQTICIVASDHYNRQK 1406
Query: 450 -----------YKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSS 498
+ PS++VCP TL W++E + P V + +G +RAK
Sbjct: 1407 LFEESGSPKFAHVPSLIVCPSTLAGHWQQELSTYAPFLKV------SAYVGPPAERAKI- 1459
Query: 499 DTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEW 558
R +S +++T+Y+ R ++L+ ++W
Sbjct: 1460 -------------------------------RSKMKKSDVVVTSYDICRNDVDELVKIDW 1488
Query: 559 GYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVL 618
Y VLDEGH I+N A+++ K L++ HR+I++G PIQN + ELWSLFDF+ PG LG
Sbjct: 1489 NYCVLDEGHVIKNARAKLTKAVKSLRSYHRLILSGTPIQNNVLELWSLFDFLMPGFLGTE 1548
Query: 619 PVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEH 678
F+ F PI A +S + + ++P++LRR+K DV A LP K
Sbjct: 1549 KTFQERFVRPIAASRDAKSSSKERERGTLALEAIHKQVLPFMLRRLKEDVLADLPPKIIQ 1608
Query: 679 VLFCSLTEEQRAVYRAFLASSEVEQILD--------GSR-------NSLYGIDVMRKICN 723
+C +++ QR + F++ + + L+ G+R + + MRK+CN
Sbjct: 1609 DYYCDMSDLQRKLLNDFVSQLNINEELEDDETEKTQGTRKKKSQKAHIFQALQYMRKLCN 1668
Query: 724 HPDLLEREQSCQIPDYGNPERSEKMKVVAQ----------------VLKVWKDQG----- 762
HP L+ E+ +P+R+ +K +A+ + ++ +D G
Sbjct: 1669 HPALILTEK--------HPKRNAIVKQLAKENSGLHDLKHAPKLTALGQLLRDCGLGNSS 1720
Query: 763 ----------------HRVLLFAQTQQMLDILESFLIASGY---EYRRMDGLTPVKQRMA 803
HRVL+F Q + MLD++E L+ + Y R+DG +R
Sbjct: 1721 VNSNGIDSALTNAVSEHRVLIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQE 1780
Query: 804 LIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQD 863
+ ++NN + + +LTT VGGLG NLTGA+ VI + DWNP D+QA +RA RIGQK+
Sbjct: 1781 AVTKFNNDPSIDVLLLTTHVGGLGLNLTGADTVIFVEHDWNPMRDLQAMDRAHRIGQKKV 1840
Query: 864 VTVYRLITRGTIEEKVYHRQIYK 886
V VYRLITRG +EEK+ Q +K
Sbjct: 1841 VNVYRLITRGCLEEKIMGLQRFK 1863
>sp|Q24368|ISWI_DROME Chromatin-remodeling complex ATPase chain Iswi OS=Drosophila
melanogaster GN=Iswi PE=1 SV=1
Length = 1027
Score = 278 bits (710), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 172/490 (35%), Positives = 252/490 (51%), Gaps = 62/490 (12%)
Query: 404 DYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVTLL 462
DYQ G+ W+ L+ GI+ DEMGLGKT+Q +S LG L HF N P IV+ P + L
Sbjct: 130 DYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYLKHFKNQAGPHIVIVPKSTL 189
Query: 463 RQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPK 522
+ W E +KW PS RA D D + D P
Sbjct: 190 QNWVNEFKKWCPSL-----------------RAVCLIGDQDTRNTFIRDV------LMPG 226
Query: 523 KWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQ 582
+WD+ + T+YE W Y V+DE HRI+N +++S + ++
Sbjct: 227 EWDVCV------------TSYEMCIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEILRE 274
Query: 583 LQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQV 642
+T +R+++TG P+QN L ELW+L +F+ P F+ F +G A + L
Sbjct: 275 FKTANRLLITGTPLQNNLHELWALLNFLLPDVFNSSEDFDEWFNTNTCLGDDALITRLHA 334
Query: 643 STAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVE 702
++ P+LLRR+KA+V +L K E +F L++ QR Y L
Sbjct: 335 ------------VLKPFLLRRLKAEVEKRLKPKKEMKIFVGLSKMQRDWYTKVLLKDI-- 380
Query: 703 QILDGS----RNSLYGIDV-MRKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQ 753
+++G+ + L I + +RK NHP L + + P Y S KM ++ +
Sbjct: 381 DVVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPG--PPYTTDTHLVYNSGKMAILDK 438
Query: 754 VLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYN-NSS 812
+L ++QG RVL+F+Q +MLDILE + Y Y R+DG TP + R I E+N ++S
Sbjct: 439 LLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNS 498
Query: 813 DVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITR 872
F+F+L+T+ GGLG NL A+ VII+D DWNP D+QA +RA RIGQK+ V V+RLIT
Sbjct: 499 AKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITE 558
Query: 873 GTIEEKVYHR 882
T+EEK+ R
Sbjct: 559 STVEEKIVER 568
>sp|Q9S775|PKL_ARATH CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis
thaliana GN=PKL PE=1 SV=1
Length = 1384
Score = 278 bits (710), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 183/543 (33%), Positives = 283/543 (52%), Gaps = 44/543 (8%)
Query: 395 PESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSI 454
PE + L YQ G+ +L ++ I+ DEMGLGKTIQ ++ L +L N+ P +
Sbjct: 266 PEFLKGLLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIALLASLFEENLI-PHL 324
Query: 455 VVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEG 514
V+ P++ LR W+RE W P +V + +AQ ++ D S G
Sbjct: 325 VIAPLSTLRNWEREFATWAPQMNVVMYFGTAQARAVIREHEFYLSKDQKKIKKKKS---G 381
Query: 515 NLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNA 574
+SS + +K R + +L+T+YE + L L ++W ++DEGHR++N ++
Sbjct: 382 QISSESKQK---------RIKFDVLLTSYEMINLDSAVLKPIKWECMIVDEGHRLKNKDS 432
Query: 575 EISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGY 634
++ Q + HRI++TG P+QN L EL+ L F+ GK G L F+ EF
Sbjct: 433 KLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFK-------- 484
Query: 635 ANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRA 694
Q+S L ++ P+LLRR+K DV +P K E +L L+ Q+ Y+A
Sbjct: 485 DINQEEQISR-------LHKMLAPHLLRRVKKDVMKDMPPKKELILRVDLSSLQKEYYKA 537
Query: 695 -FLASSEVEQILDGSRNSLYGIDV-MRKICNHPDLLEREQSCQIPDYGNP-----ERSEK 747
F + +V G++ SL I + +RK+C HP +LE + I D E K
Sbjct: 538 IFTRNYQVLTKKGGAQISLNNIMMELRKVCCHPYMLEGVEPV-IHDANEAFKQLLESCGK 596
Query: 748 MKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDE 807
++++ +++ K+QGHRVL++ Q Q MLD+LE + ++Y R+DG +R ID
Sbjct: 597 LQLLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDR 656
Query: 808 YN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866
+N +S+ F F+L+T+ GGLG NL A+ VII+D DWNP D+QA RA R+GQ V +
Sbjct: 657 FNAKNSNKFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMI 716
Query: 867 YRLITRGTIEEKVYH----RQIYKHFLTNKI-LKNPQQRRF--FKARNMKDLFTLNDDGN 919
YRLI RGTIEE++ + + +H + K+ +N Q K+LF DD
Sbjct: 717 YRLINRGTIEERMMQLTKKKMVLEHLVVGKLKTQNINQEELDDIIRYGSKELFASEDDEA 776
Query: 920 GGS 922
G S
Sbjct: 777 GKS 779
>sp|P25439|BRM_DROME ATP-dependent helicase brm OS=Drosophila melanogaster GN=brm PE=1
SV=2
Length = 1638
Score = 277 bits (709), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 169/525 (32%), Positives = 274/525 (52%), Gaps = 68/525 (12%)
Query: 397 SIFNN--LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH-FSNMYKPS 453
SI N L +YQ G++WL L+ GI+ DEMGLGKTIQ +S + L + P
Sbjct: 766 SIMVNGTLKEYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTISLVTYLMDRKKVMGPY 825
Query: 454 IVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYE 513
+++ P++ L W E EKW P+ V Y+
Sbjct: 826 LIIVPLSTLPNWVLEFEKWAPAVGV-------------------------------VSYK 854
Query: 514 GNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPN 573
G+ P+ LL N++ ++ +L+TTYE + L ++W Y ++DEGHR++N +
Sbjct: 855 GS-----PQGRRLLQNQMRATKFNVLLTTYEYVIKDKAVLAKIQWKYMIIDEGHRMKNHH 909
Query: 574 AEISLVCK-QLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVG 632
+++ V +R+++TG P+QNKL ELW+L +F+ P FE F P
Sbjct: 910 CKLTQVLNTHYIAPYRLLLTGTPLQNKLPELWALLNFLLPSIFKSCSTFEQWFNAPFATT 969
Query: 633 GYANASPLQVSTAYRCAVV--LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRA 690
G ++++ ++ L ++ P+LLRR+K +V QLP K E+++ C ++ QR
Sbjct: 970 G----EKVELNEEETILIIRRLHKVLRPFLLRRLKKEVEHQLPDKVEYIIKCDMSALQRV 1025
Query: 691 VYRAFLASSEVEQILDGSRNS----------LYGIDVMRKICNHPDLLER--EQSC-QIP 737
+Y+ + + + DGS + I +RK+CNHP + + E+ C
Sbjct: 1026 LYKHMQSKGVL--LTDGSEKGKHGKGGAKALMNTIVQLRKLCNHPFMFQHIEEKYCDHTG 1083
Query: 738 DYG---NPER---SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRR 791
+G P+ S K +++ ++L K HRVLLF Q Q + I+E +L + Y R
Sbjct: 1084 GHGVVSGPDLYRVSGKFELLDRILPKLKATNHRVLLFCQMTQCMTIIEDYLGWRQFGYLR 1143
Query: 792 MDGLTPVKQRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQ 850
+DG T + R L+ ++N SDVF+F+L+T+ GGLG NL A+ V+IFD DWNP D+Q
Sbjct: 1144 LDGTTKAEDRGELLRKFNAKGSDVFVFLLSTRAGGLGLNLQTADTVVIFDSDWNPHQDLQ 1203
Query: 851 ARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
A++RA RIGQ+ +V V RL+T ++EE++ YK + K+++
Sbjct: 1204 AQDRAHRIGQRNEVRVLRLMTVNSVEERILAAARYKLNMDEKVIQ 1248
>sp|P28370|SMCA1_HUMAN Probable global transcription activator SNF2L1 OS=Homo sapiens
GN=SMARCA1 PE=1 SV=2
Length = 1054
Score = 277 bits (708), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 173/503 (34%), Positives = 257/503 (51%), Gaps = 72/503 (14%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L DYQ G+ WL L+ GI+ DEMGLGKT+Q ++ LG L H+ N+ P +V+ P +
Sbjct: 183 LRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKS 242
Query: 461 LLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
L W E ++W PS V +G D D + D
Sbjct: 243 TLHNWMNEFKRWVPSLRVICF------VG-----------DKDARAAFIRD------EMM 279
Query: 521 PKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVC 580
P +WD+ + T+YE + W Y V+DE HRI+N +++S +
Sbjct: 280 PGEWDVCV------------TSYEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIV 327
Query: 581 KQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPL 640
++ ++ +R+++TG P+QN L ELW+L +F+ P F++ F +G
Sbjct: 328 REFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQ------ 381
Query: 641 QVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSE 700
R VL+ P+LLRR+K DV LP K E ++ L++ QR Y L
Sbjct: 382 --KLVERLHAVLK----PFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDI 435
Query: 701 VEQILDGSRNSLYGIDVM---RKICNHPDLLEREQSCQIPDYGNPER----SEKMKVVAQ 753
G + + ++++ RK CNHP L + + P Y E S KM V+ +
Sbjct: 436 DVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPG--PPYTTDEHIVSNSGKMVVLDK 493
Query: 754 VLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQR------------ 801
+L K+QG RVL+F+Q ++LDILE + + GYEY R+DG TP ++R
Sbjct: 494 LLAKLKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEEREDKFLEVEFLGQ 553
Query: 802 MALIDEYN--NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIG 859
I+ +N NSS FIF+L+T+ GGLG NL A+ VI++D DWNP D+QA +RA RIG
Sbjct: 554 REAIEAFNAPNSSK-FIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIG 612
Query: 860 QKQDVTVYRLITRGTIEEKVYHR 882
QK+ V V+RLIT T+EE++ R
Sbjct: 613 QKKPVRVFRLITDNTVEERIVER 635
>sp|Q22516|CHD3_CAEEL Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis
elegans GN=chd-3 PE=2 SV=2
Length = 1787
Score = 276 bits (707), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 175/533 (32%), Positives = 278/533 (52%), Gaps = 66/533 (12%)
Query: 382 EPPFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAG--GIIGDEMGLGKTIQVLS 439
+P F++ GG NL YQ G+ WL HC G I+ DEMGLGKT+Q L+
Sbjct: 605 QPDFISETGG---------NLHPYQLEGINWL--RHCWSNGTDAILADEMGLGKTVQSLT 653
Query: 440 FLGALHFSNMYK-PSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSS 498
FL L K P ++ P++ + W+REAE W P F+V +G R+ R
Sbjct: 654 FLYTLMKEGHTKGPFLIAAPLSTIINWEREAELWCPDFYV------VTYVGDRESRMVIR 707
Query: 499 DTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSES---GLLITTYEQLRLLGEKLLD 555
+ H+ + PK ++++ E+ +L+T+YE + + L
Sbjct: 708 E--------HEFSFVDGAVRGGPK-----VSKIKTLENLKFHVLLTSYECINMDKAILSS 754
Query: 556 VEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKL 615
++W V+DE HR++N + ++ +R+++TG P+QN L EL+ L +F+ P +
Sbjct: 755 IDWAALVVDEAHRLKNNQSTFFKNLREYNIQYRVLLTGTPLQNNLEELFHLLNFLAPDRF 814
Query: 616 GVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKK 675
L F AEF+ ++S + L +L+ P++LRR+KADV +P K
Sbjct: 815 NQLESFTAEFS--------------EISKEDQIEK-LHNLLGPHMLRRLKADVLTGMPSK 859
Query: 676 TEHVLFCSLTEEQRAVYRAFLASS--EVEQILDGSRNSLYGIDV-MRKICNHPDLLEREQ 732
E ++ L+ Q+ Y+ L + + G++ SL I + ++K CNHP L +
Sbjct: 860 QELIVRVELSAMQKKYYKNILTRNFDALNVKNGGTQMSLINIIMELKKCCNHPYLFMK-- 917
Query: 733 SC-QIPDYGNP--------ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLI 783
+C + P N + + K ++ ++L+ KD GHRVL+F+Q MLDILE F
Sbjct: 918 ACLEAPKLKNGMYEGSALIKNAGKFVLLQKMLRKLKDGGHRVLIFSQMTMMLDILEDFCD 977
Query: 784 ASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPD 842
GY+Y R+DG +QR ID YN + F+F+L+T+ GGLG NL A+ VII+D D
Sbjct: 978 VEGYKYERIDGSITGQQRQDAIDRYNAPGAKQFVFLLSTRAGGLGINLATADTVIIYDSD 1037
Query: 843 WNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
WNP D+QA RA R+GQK V +YR +T+G++EE++ K LT+ +++
Sbjct: 1038 WNPHNDIQAFSRAHRLGQKHKVMIYRFVTKGSVEERITSVAKKKMLLTHLVVR 1090
>sp|P32333|MOT1_YEAST TATA-binding protein-associated factor MOT1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MOT1 PE=1 SV=1
Length = 1867
Score = 275 bits (703), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 183/618 (29%), Positives = 293/618 (47%), Gaps = 105/618 (16%)
Query: 392 LKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF----- 446
K+P +I L YQ+ GV WL L+ GI+ D+MGLGKT+Q + + + +
Sbjct: 1262 FKLPIAIKATLRKYQQDGVNWLAFLNKYHLHGILCDDMGLGKTLQTICIIASDQYLRKED 1321
Query: 447 -------SNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSD 499
+ PS+++CP +L W+ E +++ P V +
Sbjct: 1322 YEKTRSVESRALPSLIICPPSLTGHWENEFDQYAPFLKVVV------------------- 1362
Query: 500 TDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWG 559
Y G + R L R S++ +++T+Y+ R L E+
Sbjct: 1363 ------------YAGGPTVR-------LTLRPQLSDADIIVTSYDVARNDLAVLNKTEYN 1403
Query: 560 YAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLP 619
Y VLDEGH I+N ++++ K++ HR+I+TG PIQN + ELWSLFDF+ PG LG
Sbjct: 1404 YCVLDEGHIIKNSQSKLAKAVKEITANHRLILTGTPIQNNVLELWSLFDFLMPGFLGTEK 1463
Query: 620 VFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHV 679
+F+ FA PI + S + L ++P++LRR+K DV + LP K
Sbjct: 1464 MFQERFAKPIAASRNSKTSSKEQEAGVLALEALHKQVLPFMLRRLKEDVLSDLPPKIIQD 1523
Query: 680 LFCSLTEEQRAVYRAF------LASSEVE--QILDGSRNSLYGIDVMRKICNHPDLL--- 728
+C L + Q+ +Y F + ++E +I DG ++ + MRK+CNHP L+
Sbjct: 1524 YYCELGDLQKQLYMDFTKKQKNVVEKDIENSEIADGKQHIFQALQYMRKLCNHPALVLSP 1583
Query: 729 EREQSCQIPDY--------GNPERSEKMKVVAQVL------------KVWKDQG------ 762
Q Q+ DY + + K+ + +L K +DQ
Sbjct: 1584 NHPQLAQVQDYLKQTGLDLHDIINAPKLSALRTLLFECGIGEEDIDKKASQDQNFPIQNV 1643
Query: 763 ---HRVLLFAQTQQMLDILESFLI---ASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFI 816
HR L+F Q + MLD++E+ L Y R+DG + R ++ ++N +
Sbjct: 1644 ISQHRALIFCQLKDMLDMVENDLFKKYMPSVTYMRLDGSIDPRDRQKVVRKFNEDPSIDC 1703
Query: 817 FILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIE 876
+LTTKVGGLG NLTGA+ VI + DWNP D+QA +RA RIGQK+ V VYR+IT+GT+E
Sbjct: 1704 LLLTTKVGGLGLNLTGADTVIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLE 1763
Query: 877 EKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTL----------NDDGNGGSTETS 926
EK+ Q +K + + ++ QQ + + L L N++ N G ++ +
Sbjct: 1764 EKIMGLQKFKMNIASTVVN--QQNSGLASMDTHQLLDLFDPDNVTSQDNEEKNNGDSQAA 1821
Query: 927 NIFSQLSEDVNVVGDQKD 944
++ + + G K+
Sbjct: 1822 KGMEDIANETGLTGKAKE 1839
>sp|Q7G8Y3|ISW2_ORYSJ Probable chromatin-remodeling complex ATPase chain OS=Oryza sativa
subsp. japonica GN=Os01g0367900 PE=2 SV=2
Length = 1107
Score = 275 bits (702), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 180/504 (35%), Positives = 267/504 (52%), Gaps = 61/504 (12%)
Query: 390 GGLKI---PESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH- 445
GG ++ P I + DYQ G+ WL L+ GI+ DEMGLGKT+Q +S LG LH
Sbjct: 216 GGTRLLSQPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHE 275
Query: 446 FSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGE 505
F + P +VV P + L W +E +++ P + + LG N E
Sbjct: 276 FRGITGPHMVVAPKSTLGNWIKEIQRFCPILR------AVKFLG------------NPEE 317
Query: 506 GSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDE 565
+H + NL P K+D+ + T++E L W Y ++DE
Sbjct: 318 RNHIRE---NLLQ--PGKFDVCV------------TSFEMAIKEKTTLKRFSWRYIIIDE 360
Query: 566 GHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEF 625
HRI+N N+ +S + T +R+++TG P+QN L ELWSL +F+ P F+ F
Sbjct: 361 AHRIKNENSLLSKTMRIYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWF 420
Query: 626 AVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLT 685
+ + Q + VLR P+LLRR+K+DV LP K E +L ++
Sbjct: 421 QI--------SGENDQQEVVQQLHKVLR----PFLLRRLKSDVEKGLPPKKETILKVGMS 468
Query: 686 EEQRAVYRAFLASSEVEQI-LDGSRNSLYGIDV-MRKICNHPDLLEREQSCQIPDYGNPE 743
+ Q+ YRA L ++E I G R L I + +RK CNHP L + + P Y E
Sbjct: 469 QMQKQYYRALL-QKDLEVINAGGERKRLLNIAMQLRKCCNHPYLFQGAEPG--PPYTTGE 525
Query: 744 R----SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
+ KM ++ ++L KD+ RVL+F+Q ++LDILE +L+ GY+Y R+DG T +
Sbjct: 526 HLVENAGKMVLLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGE 585
Query: 800 QRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
R A I+ +N S+ F+F+L+T+ GGLG NL A+ V+++D DWNP D+QA++RA RI
Sbjct: 586 DRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVVLYDSDWNPQADLQAQDRAHRI 645
Query: 859 GQKQDVTVYRLITRGTIEEKVYHR 882
GQK++V V+R T TIEEKV R
Sbjct: 646 GQKKEVQVFRFCTEYTIEEKVIER 669
>sp|B4KHL5|RAD54_DROMO DNA repair and recombination protein RAD54-like OS=Drosophila
mojavensis GN=okr PE=3 SV=1
Length = 783
Score = 274 bits (700), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 179/547 (32%), Positives = 274/547 (50%), Gaps = 61/547 (11%)
Query: 400 NNLFDYQKVGVQWLWE-LHCQRA---GGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSI 454
N L +Q+ GV++++E + +R G I+ DEMGLGKT+Q ++ L S KP+I
Sbjct: 147 NVLRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLTWTLLRQSPDCKPTI 206
Query: 455 ----VVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDS 510
+V P +L++ W++E KW LH L EG
Sbjct: 207 SKAIIVSPSSLVKNWEKEFTKW--------LHGRMHCLAM--------------EGGSKE 244
Query: 511 DYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIR 570
D L +N R + +L+ +YE RL L E G + DEGHR++
Sbjct: 245 DTTRALEQ-------FAMNTATRCGTPVLLISYETFRLYAHILCKTEVGMVICDEGHRLK 297
Query: 571 NPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIT 630
N + L+T R++++G PIQN L+E +SL +FV P LG F+ F I
Sbjct: 298 NSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTAADFKRNFENSIL 357
Query: 631 VGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRA 690
G A+++ + A + L L+ ++RR + LP K E V+ LT Q
Sbjct: 358 RGQNADSTDAERQRALQKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVVCVKLTPVQLQ 417
Query: 691 VYRAFLASSEVEQIL-----DGSRNSLYGIDVMRKICNHPDLL-----------EREQSC 734
+Y FL S +V + L S +L I ++K+CNHPDL+ E Q+
Sbjct: 418 IYTNFLKSDQVRRSLADCNEKASLTALADITTLKKLCNHPDLIYEKIAAKEKGFENSQNV 477
Query: 735 QIPDYG----NPERSEKMKVVAQVLKVWK-DQGHRVLLFAQTQQMLDILESFLIASGYEY 789
P+Y NPE S K ++ +L + + +V+L + Q LD+ E Y Y
Sbjct: 478 LPPNYKPKDVNPELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLFEQLARKRKYTY 537
Query: 790 RRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTD 848
R+DG +K+R ++D +N+ S+D F+F+L++K GG G NL GANR+ +FDPDWNP+ D
Sbjct: 538 VRLDGTMTIKKRSKVVDRFNDPSTDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPAND 597
Query: 849 VQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFFKARN 907
QA R WR GQK+ +YRL+ G+IEEK+ RQ +K L++ I+ N + + F +
Sbjct: 598 EQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESSEKHFTRDD 657
Query: 908 MKDLFTL 914
+KDLF+
Sbjct: 658 LKDLFSF 664
>sp|P51532|SMCA4_HUMAN Transcription activator BRG1 OS=Homo sapiens GN=SMARCA4 PE=1 SV=2
Length = 1647
Score = 273 bits (698), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 164/517 (31%), Positives = 258/517 (49%), Gaps = 63/517 (12%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L YQ G++WL L+ GI+ DEMGLGKTIQ ++ + L + P +++ P++
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLS 813
Query: 461 LLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
L W E +KW PS K S Y+G+ ++R
Sbjct: 814 TLSNWAYEFDKWAPSV------------------VKVS-------------YKGSPAARR 842
Query: 521 PKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVC 580
+ ++ + +L+TTYE + L + W Y ++DEGHR++N + +++ V
Sbjct: 843 -----AFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVL 897
Query: 581 K-QLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASP 639
R+++TG P+QNKL ELW+L +F+ P FE F P + G
Sbjct: 898 NTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD 955
Query: 640 LQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASS 699
L L ++ P+LLRR+K +V AQLP+K E+V+ C ++ QR +YR A
Sbjct: 956 LNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKG 1015
Query: 700 EVEQILDGSRNS----------LYGIDVMRKICNHPDLLEREQSCQIPDYGNP------- 742
+ + DGS + I +RKICNHP + + + G
Sbjct: 1016 VL--LTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGL 1073
Query: 743 ---ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
S K +++ ++L + H+VLLF Q ++ I+E + G++Y R+DG T +
Sbjct: 1074 DLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133
Query: 800 QRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
R L+ +N S+ FIF+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RI
Sbjct: 1134 DRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRI 1193
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
GQ+ +V V RL T ++EEK+ YK + K+++
Sbjct: 1194 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1230
>sp|P38144|ISW1_YEAST ISWI chromatin-remodeling complex ATPase ISW1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=ISW1 PE=1
SV=2
Length = 1129
Score = 273 bits (697), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 177/529 (33%), Positives = 276/529 (52%), Gaps = 74/529 (13%)
Query: 375 DEDSDNNEPPFVTLEGGLK-IPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGK 433
+EDSD++E ++E + P + L YQ GV WL LH + GI+ DEMGLGK
Sbjct: 172 EEDSDDDE----SIEFQFRESPAYVNGQLRPYQIQGVNWLVSLHKNKIAGILADEMGLGK 227
Query: 434 TIQVLSFLGALHF-SNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRK 492
T+Q +SFLG L + + P +V+ P + L W RE +W P + +L G ++
Sbjct: 228 TLQTISFLGYLRYIEKIPGPFLVIAPKSTLNNWLREINRWTPDVNAFILQ------GDKE 281
Query: 493 KRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK 552
+RA +L+ ++L + ++I +YE +
Sbjct: 282 ERA-----------------------------ELIQKKLLGCDFDVVIASYEIIIREKSP 312
Query: 553 LLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFP 612
L + W Y ++DE HRI+N + +S V ++ + +R+++TG P+QN L ELW+L +F+ P
Sbjct: 313 LKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNLHELWALLNFLLP 372
Query: 613 GKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQL 672
F+ F+ T + L ++ P+LLRR+K+DV L
Sbjct: 373 DIFSDAQDFDDWFSSESTE-----------EDQDKIVKQLHTVLQPFLLRRIKSDVETSL 421
Query: 673 PKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDG---------SRNSLYGIDV-MRKIC 722
K E L+ ++ Q+ Y+ L E+ LD S+ L I + +RK C
Sbjct: 422 LPKKELNLYVGMSSMQKKWYKKIL-----EKDLDAVNGSNGSKESKTRLLNIMMQLRKCC 476
Query: 723 NHPDLLEREQSCQIPDYGNPER----SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDIL 778
NHP L + + P Y E + K++V+ ++LK K++G RVL+F+Q ++LDIL
Sbjct: 477 NHPYLFDGAEPG--PPYTTDEHLVYNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDIL 534
Query: 779 ESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVI 837
E + YEY R+DG T + R+ ID+YN S F+F+LTT+ GGLG NLT A+ V+
Sbjct: 535 EDYCYFRNYEYCRIDGSTAHEDRIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVV 594
Query: 838 IFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYK 886
++D DWNP D+QA +RA RIGQK+ V V+RL+T ++EEK+ R K
Sbjct: 595 LYDSDWNPQADLQAMDRAHRIGQKKQVKVFRLVTDNSVEEKILERATQK 643
>sp|Q3TKT4|SMCA4_MOUSE Transcription activator BRG1 OS=Mus musculus GN=Smarca4 PE=1 SV=1
Length = 1613
Score = 272 bits (696), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 164/517 (31%), Positives = 258/517 (49%), Gaps = 63/517 (12%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L YQ G++WL L+ GI+ DEMGLGKTIQ ++ + L + P +++ P++
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLS 813
Query: 461 LLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
L W E +KW PS K S Y+G+ ++R
Sbjct: 814 TLSNWAYEFDKWAPSV------------------VKVS-------------YKGSPAARR 842
Query: 521 PKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVC 580
+ ++ + +L+TTYE + L + W Y ++DEGHR++N + +++ V
Sbjct: 843 -----AFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVL 897
Query: 581 K-QLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASP 639
R+++TG P+QNKL ELW+L +F+ P FE F P + G
Sbjct: 898 NTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD 955
Query: 640 LQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASS 699
L L ++ P+LLRR+K +V AQLP+K E+V+ C ++ QR +YR A
Sbjct: 956 LNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKG 1015
Query: 700 EVEQILDGSRNS----------LYGIDVMRKICNHPDLLEREQSCQIPDYGNP------- 742
+ + DGS + I +RKICNHP + + + G
Sbjct: 1016 VL--LTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGL 1073
Query: 743 ---ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
S K +++ ++L + H+VLLF Q ++ I+E + G++Y R+DG T +
Sbjct: 1074 DLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133
Query: 800 QRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
R L+ +N S+ FIF+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RI
Sbjct: 1134 DRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRI 1193
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
GQ+ +V V RL T ++EEK+ YK + K+++
Sbjct: 1194 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1230
>sp|A7Z019|SMCA4_BOVIN Transcription activator BRG1 OS=Bos taurus GN=SMARCA4 PE=2 SV=1
Length = 1606
Score = 272 bits (696), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 164/517 (31%), Positives = 258/517 (49%), Gaps = 63/517 (12%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L YQ G++WL L+ GI+ DEMGLGKTIQ ++ + L + P +++ P++
Sbjct: 746 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLS 805
Query: 461 LLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
L W E +KW PS K S Y+G+ ++R
Sbjct: 806 TLSNWAYEFDKWAPSV------------------VKVS-------------YKGSPAARR 834
Query: 521 PKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVC 580
+ ++ + +L+TTYE + L + W Y ++DEGHR++N + +++ V
Sbjct: 835 -----AFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVL 889
Query: 581 K-QLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASP 639
R+++TG P+QNKL ELW+L +F+ P FE F P + G
Sbjct: 890 NTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD 947
Query: 640 LQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASS 699
L L ++ P+LLRR+K +V AQLP+K E+V+ C ++ QR +YR A
Sbjct: 948 LNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKG 1007
Query: 700 EVEQILDGSRNS----------LYGIDVMRKICNHPDLLEREQSCQIPDYGNP------- 742
+ + DGS + I +RKICNHP + + + G
Sbjct: 1008 VL--LTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGL 1065
Query: 743 ---ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
S K +++ ++L + H+VLLF Q ++ I+E + G++Y R+DG T +
Sbjct: 1066 DLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1125
Query: 800 QRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
R L+ +N S+ FIF+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RI
Sbjct: 1126 DRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRI 1185
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
GQ+ +V V RL T ++EEK+ YK + K+++
Sbjct: 1186 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1222
>sp|Q8K1P7|SMCA4_RAT Transcription activator BRG1 OS=Rattus norvegicus GN=Smarca4 PE=1
SV=1
Length = 1613
Score = 272 bits (695), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 164/517 (31%), Positives = 258/517 (49%), Gaps = 63/517 (12%)
Query: 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPVT 460
L YQ G++WL L+ GI+ DEMGLGKTIQ ++ + L + P +++ P++
Sbjct: 754 LKQYQIKGLEWLVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRINGPFLIIVPLS 813
Query: 461 LLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRN 520
L W E +KW PS K S Y+G+ ++R
Sbjct: 814 TLSNWAYEFDKWAPSV------------------VKVS-------------YKGSPAARR 842
Query: 521 PKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVC 580
+ ++ + +L+TTYE + L + W Y ++DEGHR++N + +++ V
Sbjct: 843 -----AFVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVL 897
Query: 581 K-QLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASP 639
R+++TG P+QNKL ELW+L +F+ P FE F P + G
Sbjct: 898 NTHYVAPRRLLLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG--EKVD 955
Query: 640 LQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASS 699
L L ++ P+LLRR+K +V AQLP+K E+V+ C ++ QR +YR A
Sbjct: 956 LNEEETILIIRRLHKVLRPFLLRRLKKEVEAQLPEKVEYVIKCDMSALQRVLYRHMQAKG 1015
Query: 700 EVEQILDGSRNS----------LYGIDVMRKICNHPDLLEREQSCQIPDYGNP------- 742
+ + DGS + I +RKICNHP + + + G
Sbjct: 1016 VL--LTDGSEKDKKGKGGTKTLMNTIMQLRKICNHPYMFQHIEESFSEHLGFTGGIVQGL 1073
Query: 743 ---ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVK 799
S K +++ ++L + H+VLLF Q ++ I+E + G++Y R+DG T +
Sbjct: 1074 DLYRASGKFELLDRILPKLRATNHKVLLFCQMTSLMTIMEDYFAYRGFKYLRLDGTTKAE 1133
Query: 800 QRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858
R L+ +N S+ FIF+L+T+ GGLG NL A+ VIIFD DWNP D+QA++RA RI
Sbjct: 1134 DRGMLLKTFNEPGSEYFIFLLSTRAGGLGLNLQSADTVIIFDSDWNPHQDLQAQDRAHRI 1193
Query: 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
GQ+ +V V RL T ++EEK+ YK + K+++
Sbjct: 1194 GQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1230
>sp|Q6DIC0|SMCA2_MOUSE Probable global transcription activator SNF2L2 OS=Mus musculus
GN=Smarca2 PE=1 SV=1
Length = 1577
Score = 271 bits (693), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 165/521 (31%), Positives = 260/521 (49%), Gaps = 63/521 (12%)
Query: 398 IFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVV 456
I L YQ G++W+ L+ GI+ DEMGLGKTIQ ++ + L + P +++
Sbjct: 725 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 784
Query: 457 CPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNL 516
P++ L W E +KW PS V++ Y+G
Sbjct: 785 VPLSTLSNWTYEFDKWAPSV-VKI------------------------------SYKGTP 813
Query: 517 SSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEI 576
+ R L+ ++ + +L+TTYE + L + W Y ++DEGHR++N + ++
Sbjct: 814 AMRRS-----LVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKL 868
Query: 577 SLVCK-QLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYA 635
+ V RI++TG P+QNKL ELW+L +F+ P FE F P + G
Sbjct: 869 TQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG-- 926
Query: 636 NASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAF 695
L L ++ P+LLRR+K +V +QLP+K E+V+ C ++ Q+ +YR
Sbjct: 927 ERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM 986
Query: 696 LASSEVEQILDGSRNS----------LYGIDVMRKICNHPDLLER--EQSCQIPDYGNP- 742
A + + DGS + I +RKICNHP + + E + Y N
Sbjct: 987 QAKGIL--LTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGV 1044
Query: 743 -------ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGL 795
S K +++ ++L + HRVLLF Q ++ I+E + + Y R+DG
Sbjct: 1045 INGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGT 1104
Query: 796 TPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARER 854
T + R AL+ ++N S FIF+L+T+ GGLG NL A+ V+IFD DWNP D+QA++R
Sbjct: 1105 TKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDR 1164
Query: 855 AWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
A RIGQ+ +V V RL T ++EEK+ YK + K+++
Sbjct: 1165 AHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1205
>sp|Q7KU24|CHD1_DROME Chromodomain-helicase-DNA-binding protein 1 OS=Drosophila
melanogaster GN=Chd1 PE=1 SV=1
Length = 1883
Score = 271 bits (693), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 191/621 (30%), Positives = 304/621 (48%), Gaps = 101/621 (16%)
Query: 381 NEPPFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSF 440
N+P F L GL L DYQ G+ WL C+ I+ DEMGLGKTIQ + F
Sbjct: 517 NQPEF--LSSGL--------TLRDYQMDGLNWLLHSWCKENSVILADEMGLGKTIQTICF 566
Query: 441 LGALH-FSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSD 499
L +L ++Y P + V P++ + W+RE + W P +V
Sbjct: 567 LYSLFKIHHLYGPFLCVVPLSTMTAWQREFDLWAPDMNV--------------------- 605
Query: 500 TDNDGEGSHDSDYEGNLSSRN-PKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEW 558
Y G++ SR ++++ R + ++TTYE + + L ++W
Sbjct: 606 ----------VTYLGDIKSRELIQQYEWQFESSKRLKFNCILTTYEIVLKDKQFLGTLQW 655
Query: 559 GYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVL 618
++DE HR++N ++ + K+ T HR+++TG P+QN L ELW+L F+ P K
Sbjct: 656 AALLVDEAHRLKNDDSLLYKSLKEFDTNHRLLITGTPLQNSLKELWALLHFIMPDKFDTW 715
Query: 619 PVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEH 678
FE + + NA + L + PY+LRR+K DV LP K E
Sbjct: 716 ENFEVQ---------HGNAED-------KGYTRLHQQLEPYILRRVKKDVEKSLPAKVEQ 759
Query: 679 VLFCSLTEEQRAVYRAFLASSEVEQILDGSRNS----LYGIDVMRKICNHPDL------- 727
+L +T Q+ Y+ L + + + G R S L + ++K CNH L
Sbjct: 760 ILRVEMTSLQKQYYKWIL-TKNFDALRKGKRGSTSTFLNIVIELKKCCNHAALIRPSEFE 818
Query: 728 ---LEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIA 784
L+++++ Q G S K+ ++ ++L K+ GHRVL+F+Q +MLD+L +L
Sbjct: 819 LMGLQQDEALQTLLKG----SGKLVLLDKLLCRLKETGHRVLIFSQMVRMLDVLADYLQK 874
Query: 785 SGYEYRRMDGLTPVKQRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDW 843
+ ++R+DG + R +D +N S F F+L+T+ GGLG NL A+ VIIFD DW
Sbjct: 875 RHFPFQRLDGSIKGEMRRQALDHFNAEGSQDFCFLLSTRAGGLGINLATADTVIIFDSDW 934
Query: 844 NPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFF 903
NP D+QA+ RA RIGQK V +YRL+T ++EE++ R K L + ++ QR
Sbjct: 935 NPQNDLQAQARAHRIGQKNQVNIYRLVTARSVEEQIVERAKQKMVLDHLVI----QRMDT 990
Query: 904 KARNMKDLFTLNDDGNGGSTETSNIFSQLSEDVNVV---GDQKDKEDKQKHKKAASANAD 960
R + L+ GNG S+ SN F++ +D++ + G ++ +D+Q+H D
Sbjct: 991 TGRTV-----LDKSGNGHSS-NSNPFNK--DDLSAILKFGAEELFKDEQEHD-------D 1035
Query: 961 DAVGDKENNLEIGSSRRKGKE 981
D V D + L +R + E
Sbjct: 1036 DLVCDIDEILRRAETRNEDPE 1056
>sp|P51531|SMCA2_HUMAN Probable global transcription activator SNF2L2 OS=Homo sapiens
GN=SMARCA2 PE=1 SV=2
Length = 1590
Score = 271 bits (692), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 165/521 (31%), Positives = 260/521 (49%), Gaps = 63/521 (12%)
Query: 398 IFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVV 456
I L YQ G++W+ L+ GI+ DEMGLGKTIQ ++ + L + P +++
Sbjct: 720 INGTLKHYQLQGLEWMVSLYNNNLNGILADEMGLGKTIQTIALITYLMEHKRLNGPYLII 779
Query: 457 CPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNL 516
P++ L W E +KW PS V++ Y+G
Sbjct: 780 VPLSTLSNWTYEFDKWAPSV-VKI------------------------------SYKGTP 808
Query: 517 SSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEI 576
+ R L+ ++ + +L+TTYE + L + W Y ++DEGHR++N + ++
Sbjct: 809 AMRRS-----LVPQLRSGKFNVLLTTYEYIIKDKHILAKIRWKYMIVDEGHRMKNHHCKL 863
Query: 577 SLVCK-QLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYA 635
+ V RI++TG P+QNKL ELW+L +F+ P FE F P + G
Sbjct: 864 TQVLNTHYVAPRRILLTGTPLQNKLPELWALLNFLLPTIFKSCSTFEQWFNAPFAMTG-- 921
Query: 636 NASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAF 695
L L ++ P+LLRR+K +V +QLP+K E+V+ C ++ Q+ +YR
Sbjct: 922 ERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKVEYVIKCDMSALQKILYRHM 981
Query: 696 LASSEVEQILDGSRNS----------LYGIDVMRKICNHPDLLER--EQSCQIPDYGNP- 742
A + + DGS + I +RKICNHP + + E + Y N
Sbjct: 982 QAKGIL--LTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEESFAEHLGYSNGV 1039
Query: 743 -------ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGL 795
S K +++ ++L + HRVLLF Q ++ I+E + + Y R+DG
Sbjct: 1040 INGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAFRNFLYLRLDGT 1099
Query: 796 TPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARER 854
T + R AL+ ++N S FIF+L+T+ GGLG NL A+ V+IFD DWNP D+QA++R
Sbjct: 1100 TKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQDLQAQDR 1159
Query: 855 AWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
A RIGQ+ +V V RL T ++EEK+ YK + K+++
Sbjct: 1160 AHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQ 1200
>sp|Q9US25|HRP1_SCHPO Chromodomain helicase hrp1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=hrp1 PE=1 SV=1
Length = 1373
Score = 271 bits (692), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 177/536 (33%), Positives = 270/536 (50%), Gaps = 73/536 (13%)
Query: 380 NNEPPFVTLEGGLKIPESI-FNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVL 438
N PP+ LE K P I + D+Q G+ W+ L + GI+ DEMGLGKT+Q +
Sbjct: 370 NTRPPYRKLE---KQPSYIKGGEIRDFQLTGINWMAYLWHRNENGILADEMGLGKTVQTV 426
Query: 439 SFLGAL-HFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKS 497
FL L H + P ++V P++ + W+ W P +
Sbjct: 427 CFLSYLVHSLKQHGPFLIVVPLSTVPAWQETLANWTPDLNSIC----------------- 469
Query: 498 SDTDNDGEGSHDSDYEGNLSSR-NPKKWDLLINRVLRS-ESGLLITTYEQLRLLGEKLLD 555
Y GN SR N ++++ ++ R + +L+TTYE + ++L +
Sbjct: 470 --------------YTGNTESRANIREYEFYLSTNSRKLKFNILLTTYEYILKDKQELNN 515
Query: 556 VEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKL 615
+ W Y +DE HR++N + + Q +T +R+++TG P+QN L EL SL +F+ PGK
Sbjct: 516 IRWQYLAIDEAHRLKNSESSLYETLSQFRTANRLLITGTPLQNNLKELASLVNFLMPGKF 575
Query: 616 GVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKK 675
+ E F P NA R L++ + P++LRR+K DV LP K
Sbjct: 576 YIRD--ELNFDQP-------NAE------QERDIRDLQERLQPFILRRLKKDVEKSLPSK 620
Query: 676 TEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRN-----SLYGIDV-MRKICNHPDL-- 727
+E +L L++ Q Y+ L + + L G + SL I V ++K+ NHP L
Sbjct: 621 SERILRVELSDMQTEWYKNILTKN--YRALTGHTDGRGQLSLLNIVVELKKVSNHPYLFP 678
Query: 728 -------LEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILES 780
+ R+ + + G S KM ++ ++L+ K GHRVL+F+Q +ML+IL
Sbjct: 679 GAAEKWMMGRKMTREDTLRGIIMNSGKMVLLDKLLQRLKHDGHRVLIFSQMVRMLNILGE 738
Query: 781 FLIASGYEYRRMDGLTPVKQRMALIDEYN--NSSDVFIFILTTKVGGLGTNLTGANRVII 838
++ GY Y+R+DG P R ID +N +S D F+F+L+T+ GGLG NL A+ VII
Sbjct: 739 YMSLRGYNYQRLDGTIPASVRRVSIDHFNAPDSPD-FVFLLSTRAGGLGINLNTADTVII 797
Query: 839 FDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL 894
FD DWNP D+QA RA RIGQK V VYR +++ T+EE + R K L I+
Sbjct: 798 FDSDWNPQADLQAMARAHRIGQKNHVNVYRFLSKDTVEEDILERARRKMILEYAII 853
>sp|Q9UTN6|SNF21_SCHPO Chromatin structure-remodeling complex subunit snf21
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=snf21 PE=1 SV=1
Length = 1199
Score = 271 bits (692), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 170/542 (31%), Positives = 275/542 (50%), Gaps = 66/542 (12%)
Query: 382 EPPFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFL 441
E P + + G LK +YQ G+QW+ L+ GI+ DEMGLGKTIQ +S +
Sbjct: 407 EQPSILVGGKLK----------EYQLRGLQWMISLYNNHLNGILADEMGLGKTIQTISLI 456
Query: 442 GAL-HFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDT 500
L P +V+ P++ L W E E+W PS V+++
Sbjct: 457 THLIEKKRQNGPFLVIVPLSTLTNWTMEFERWAPSI-VKIV------------------- 496
Query: 501 DNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGY 560
Y+G P+ L +V S +L+TTYE + L ++W Y
Sbjct: 497 -----------YKGP-----PQVRKALHPQVRHSNFQVLLTTYEYIIKDRPLLSRIKWIY 540
Query: 561 AVLDEGHRIRNPNAEIS-LVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLP 619
++DEGHR++N ++++ + + +R+I+TG P+QN L ELW+L +FV P +
Sbjct: 541 MIIDEGHRMKNTQSKLTNTLTTYYSSRYRLILTGTPLQNNLPELWALLNFVLPRIFNSIK 600
Query: 620 VFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHV 679
F+ F P G + L + L ++ P+LLRR+K DV A+LP K E V
Sbjct: 601 SFDEWFNTPFANTGGQDKMELTEEESLLVIRRLHKVLRPFLLRRLKKDVEAELPDKVEKV 660
Query: 680 LFCSLTEEQRAVY-----RAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSC 734
+ C ++ Q+ +Y L + ++ G + + ++KICNHP + E +
Sbjct: 661 IRCQMSGLQQKLYYQMKKHGMLYVEDAKRGKTGIKGLQNTVMQLKKICNHPFVFEDVERS 720
Query: 735 QIPDYGNPER----SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYR 790
P N + S K +++ ++L GHR+L+F Q Q+++I+E +L + Y
Sbjct: 721 IDPTGFNYDMLWRVSGKFELLDRILPKLFRSGHRILMFFQMTQIMNIMEDYLHYRQWRYL 780
Query: 791 RMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDV 849
R+DG T R L+ +N+ +++V +F+L+T+ GGLG NL A+ VIIFD DWNP D+
Sbjct: 781 RLDGSTKADDRSKLLGVFNDPTAEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDL 840
Query: 850 QARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK--------NPQQRR 901
QA++RA RIGQ ++V +YRLIT ++EE + R YK + K+++ P++R
Sbjct: 841 QAQDRAHRIGQTKEVRIYRLITEKSVEENILARAQYKLDIDGKVIQAGKFDNKSTPEERE 900
Query: 902 FF 903
F
Sbjct: 901 AF 902
>sp|Q8RWY3|ISW2_ARATH Putative chromatin-remodeling complex ATPase chain OS=Arabidopsis
thaliana GN=At3g06400 PE=2 SV=3
Length = 1055
Score = 270 bits (689), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 168/498 (33%), Positives = 250/498 (50%), Gaps = 56/498 (11%)
Query: 392 LKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH-FSNMY 450
L P I + DYQ G+ WL L+ GI+ DEMGLGKT+Q +S L LH + +
Sbjct: 179 LTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLAYLHEYRGIN 238
Query: 451 KPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDS 510
P +VV P + L W E ++ P
Sbjct: 239 GPHMVVAPKSTLGNWMNEIRRFCPVLRA-------------------------------V 267
Query: 511 DYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIR 570
+ GN R + DLL+ + + +T++E L W Y ++DE HRI+
Sbjct: 268 KFLGNPEERRHIREDLLVA----GKFDICVTSFEMAIKEKTALRRFSWRYIIIDEAHRIK 323
Query: 571 NPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIT 630
N N+ +S + T +R+++TG P+QN L ELW+L +F+ P F+ F +
Sbjct: 324 NENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQI--- 380
Query: 631 VGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRA 690
+ Q + VLR P+LLRR+K+DV LP K E +L +++ Q+
Sbjct: 381 -----SGENDQQEVVQQLHKVLR----PFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQ 431
Query: 691 VYRAFLASSEVEQILDGSRNSLYGIDV-MRKICNHPDLLEREQSCQIPDYGNPER----S 745
Y+A L G R L I + +RK CNHP L + + P Y + +
Sbjct: 432 YYKALLQKDLEAVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPG--PPYTTGDHLITNA 489
Query: 746 EKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALI 805
KM ++ ++L K++ RVL+F+Q ++LDILE +L+ GY Y R+DG T +R A I
Sbjct: 490 GKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASI 549
Query: 806 DEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864
+ YN S+ F+F+L+T+ GGLG NL A+ VI++D DWNP D+QA++RA RIGQK++V
Sbjct: 550 EAYNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEV 609
Query: 865 TVYRLITRGTIEEKVYHR 882
V+R T IEEKV R
Sbjct: 610 QVFRFCTESAIEEKVIER 627
>sp|Q12873|CHD3_HUMAN Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3
PE=1 SV=3
Length = 2000
Score = 270 bits (689), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 172/527 (32%), Positives = 270/527 (51%), Gaps = 52/527 (9%)
Query: 381 NEPPFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSF 440
+P F+T GG L YQ G+ WL Q I+ DEMGLGKTIQ + F
Sbjct: 724 TQPRFITATGG---------TLHMYQLEGLNWLRFSWAQGTDTILADEMGLGKTIQTIVF 774
Query: 441 LGALHFSNMYK-PSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSD 499
L +L+ K P +V P++ + W+RE + W P F+V + + +D + + S
Sbjct: 775 LYSLYKEGHTKGPFLVSAPLSTIINWEREFQMWAPKFYV-VTYTGDKDSRAIIRENEFSF 833
Query: 500 TDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWG 559
DN +G + + R + + +L+T+YE + + L + W
Sbjct: 834 EDNAIKGGKKA---------------FKMKREAQVKFHVLLTSYELITIDQAALGSIRWA 878
Query: 560 YAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLP 619
V+DE HR++N ++ V + H++++TG P+QN L EL+ L +F+ P + L
Sbjct: 879 CLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTPERFNNLE 938
Query: 620 VFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHV 679
F EFA +S + L DL+ P++LRR+KADV +P KTE +
Sbjct: 939 GFLEEFA--------------DISKEDQIKK-LHDLLGPHMLRRLKADVFKNMPAKTELI 983
Query: 680 LFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVM---RKICNHPDL--LEREQSC 734
+ L+ Q+ Y+ L + G N + +++M +K CNHP L + +S
Sbjct: 984 VRVELSPMQKKYYKYILTRNFEALNSRGGGNQVSLLNIMMDLKKCCNHPYLFPVAAMESP 1043
Query: 735 QIPDYGNP-----ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEY 789
++P + S K+ ++ ++L+ K+QGHRVL+F+Q +MLD+LE FL GY+Y
Sbjct: 1044 KLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKY 1103
Query: 790 RRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTD 848
R+DG R ID +N + F F+L+T+ GGLG NL A+ VIIFD DWNP D
Sbjct: 1104 ERIDGGITGALRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIFDSDWNPHND 1163
Query: 849 VQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
+QA RA RIGQ V +YR +TR ++EE++ K LT+ +++
Sbjct: 1164 IQAFSRAHRIGQANKVMIYRFVTRASVEERITQVAKRKMMLTHLVVR 1210
>sp|G5EBZ4|LE418_CAEEL Protein let-418 OS=Caenorhabditis elegans GN=let-418 PE=1 SV=1
Length = 1829
Score = 269 bits (688), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 179/532 (33%), Positives = 276/532 (51%), Gaps = 64/532 (12%)
Query: 382 EPPFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAG--GIIGDEMGLGKTIQVLS 439
+P +VT GG L YQ G+ WL HC G I+ DEMGLGKT+Q L+
Sbjct: 591 QPDYVTETGG---------KLHPYQLEGLNWL--RHCWSNGTDAILADEMGLGKTVQSLT 639
Query: 440 FLGALHFSNMYK-PSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSS 498
FL +L K P ++ P++ + W+REAE+W P F+V +G R R
Sbjct: 640 FLYSLMKEGHCKGPFLIAAPLSTIINWEREAEQWCPDFYV------VTYVGLRDARVVLR 693
Query: 499 DTDNDGEGSHDSDY-EGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVE 557
+ H+ + EG + S PK + ++ +L+T+YE + + L +E
Sbjct: 694 E--------HEFSFVEGAVRS-GPKASKMKTTENMKFH--VLLTSYETINMDKTILSSIE 742
Query: 558 WGYAVLDEGHRIRNPNAEISLVCKQLQ--TVH-RIIMTGAPIQNKLSELWSLFDFVFPGK 614
WG V+DE HR++N SL K L T+H R+++TG P+QN L EL+ L +F+ +
Sbjct: 743 WGALVVDEAHRLKNNQ---SLFFKNLNEYTIHYRVLLTGTPLQNNLEELFHLLNFLSKER 799
Query: 615 LGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPK 674
L F AEF ++S + L +L+ P++LRR+KADV +P
Sbjct: 800 FNQLEAFTAEFN--------------EISKEDQIEK-LHNLLGPHMLRRLKADVLTGMPS 844
Query: 675 KTEHVLFCSLTEEQRAVYRAFLASS--EVEQILDGSRNSLYGIDV-MRKICNHPDLL--- 728
K+E ++ L+ Q+ Y+ L + + G++ SL + + ++K CNHP L
Sbjct: 845 KSELIVRVELSAMQKKWYKNILTRNFDALNVKNGGTQMSLMNVLMELKKCCNHPYLFVKA 904
Query: 729 ----EREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIA 784
+E++ + S K ++ ++L+ KD GHRVL+F+Q +MLDI+E
Sbjct: 905 ELEAPKEKNGMYEGTALIKNSGKFVLLQKMLRKLKDGGHRVLIFSQMTRMLDIMEDLCEY 964
Query: 785 SGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDW 843
GY Y R+DG + R ID YN + FIF+L+T+ GGLG NL A+ VII+D DW
Sbjct: 965 EGYRYERIDGSIMGQMRQDAIDRYNAPGAQQFIFLLSTRAGGLGINLATADTVIIYDSDW 1024
Query: 844 NPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
NP D+QA RA R+GQK V +YR +T+ ++EEK+ K L + +++
Sbjct: 1025 NPHNDIQAFSRAHRLGQKHKVMIYRFVTKKSVEEKITSVAKKKMLLNHLVVR 1076
>sp|B4M9A8|RAD54_DROVI DNA repair and recombination protein RAD54-like OS=Drosophila
virilis GN=okr PE=3 SV=1
Length = 786
Score = 268 bits (686), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 178/545 (32%), Positives = 271/545 (49%), Gaps = 61/545 (11%)
Query: 400 NNLFDYQKVGVQWLWE-LHCQRA---GGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSI 454
N L +Q+ GV++++E + +R G I+ DEMGLGKT+Q ++ L S KP+I
Sbjct: 147 NVLRPHQREGVRFMYECVEGKRGNFNGCIMADEMGLGKTLQCVTLTWTLLRQSPDCKPTI 206
Query: 455 ----VVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDS 510
VV P +L++ W++E KW LH L EG
Sbjct: 207 SKAIVVSPSSLVKNWEKEFTKW--------LHGRMHCLAM--------------EGGSKE 244
Query: 511 DYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIR 570
D L +N R + +L+ +YE RL L E G + DEGHR++
Sbjct: 245 DTTRTLEQ-------FAMNTATRCGTPVLLISYETFRLYSHILCKTEVGMVICDEGHRLK 297
Query: 571 NPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIT 630
N + L+T R++++G PIQN L+E +SL +FV P LG F+ F I
Sbjct: 298 NSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTGSDFKRNFENAIL 357
Query: 631 VGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRA 690
G A+++ + A L L+ ++RR + LP K E V+ LT Q
Sbjct: 358 RGQNADSTDAERERALEKTQELVGLVNQCIIRRTNQILTKYLPVKFEMVVCAKLTAVQLQ 417
Query: 691 VYRAFLASSEVEQIL-----DGSRNSLYGIDVMRKICNHPDLL-----------EREQSC 734
+Y FL S +V + L + +L I ++K+CNHPDL+ E Q+
Sbjct: 418 LYTNFLKSDQVRRSLADCTDKTTLTALADITTLKKLCNHPDLIYEKIAAREKGFENSQNV 477
Query: 735 QIPDYG----NPERSEKMKVVAQVLKVWK-DQGHRVLLFAQTQQMLDILESFLIASGYEY 789
P+Y NPE S K ++ +L + + +V+L + Q LD+ E Y Y
Sbjct: 478 LPPNYKPKDVNPELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLFEQLARKRKYSY 537
Query: 790 RRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTD 848
R+DG +K+R ++D +N+ ++D F+F+L++K GG G NL GANR+ +FDPDWNP+ D
Sbjct: 538 VRLDGTMTIKKRSKVVDRFNDPATDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPAND 597
Query: 849 VQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL-KNPQQRRFFKARN 907
QA R WR GQK+ +YRL+ G+IEEK+ RQ +K L++ I+ N + F +
Sbjct: 598 EQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSSIIDNNDSAEKHFTRDD 657
Query: 908 MKDLF 912
+KDLF
Sbjct: 658 LKDLF 662
>sp|B6ZLK2|CHD1_CHICK Chromodomain-helicase-DNA-binding protein 1 OS=Gallus gallus
GN=CHD1 PE=1 SV=1
Length = 1719
Score = 267 bits (683), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 172/537 (32%), Positives = 271/537 (50%), Gaps = 83/537 (15%)
Query: 383 PPFVTLEGGLKIPESIFNN----LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVL 438
P FV L+ K P I + L DYQ G+ WL C+ I+ DEMGLGKTIQ +
Sbjct: 457 PRFVALK---KQPSYIGGHESLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTI 513
Query: 439 SFLGAL-HFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKS 497
SFL L H +Y P ++V P++ L W+RE + W P + +
Sbjct: 514 SFLNYLFHEHQLYGPFLLVVPLSTLTSWQREIQTWAPQMNAVV----------------- 556
Query: 498 SDTDNDGEGSHDSDYEGNLSSRNP-KKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDV 556
Y G+++SRN + + + + R + +L+TTYE L L +
Sbjct: 557 --------------YLGDITSRNMIRTHEWMHPQTKRLKFNILLTTYEILLKDKSFLGGL 602
Query: 557 EWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLG 616
W + +DE HR++N ++ + ++ HR+++TG P+QN L ELWSL F+ P K
Sbjct: 603 NWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEKFS 662
Query: 617 VLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKT 676
FE E G YA+ L + P+LLRR+K DV LP K
Sbjct: 663 SWEDFEEEHGKGREYG-YAS---------------LHKELEPFLLRRVKKDVEKSLPAKV 706
Query: 677 EHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYG-IDVM---RKICNHPDLLEREQ 732
E +L ++ Q+ Y+ L + + + GS+ S G +++M +K CNH L+
Sbjct: 707 EQILRMEMSALQKQYYKWILTRN-YKALSKGSKGSTSGFLNIMMELKKCCNHCYLI---- 761
Query: 733 SCQIPDYGNPERSEKMKVVAQVLK-------------VWKDQGHRVLLFAQTQQMLDILE 779
+ PD + E K + + +++ +++G+RVL+F+Q +MLDIL
Sbjct: 762 --KPPD--DNEFYNKQEALQHLIRSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILA 817
Query: 780 SFLIASGYEYRRMDGLTPVKQRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVII 838
+L + ++R+DG + R +D +N S+ F F+L+T+ GGLG NL A+ V+I
Sbjct: 818 EYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVI 877
Query: 839 FDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895
FD DWNP D+QA+ RA RIGQK+ V +YRL+T+G++EE + R K L + +++
Sbjct: 878 FDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQ 934
>sp|B4JCS7|RAD54_DROGR DNA repair and recombination protein RAD54-like OS=Drosophila
grimshawi GN=okr PE=3 SV=1
Length = 786
Score = 266 bits (681), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 179/549 (32%), Positives = 270/549 (49%), Gaps = 65/549 (11%)
Query: 400 NNLFDYQKVGVQWLWELHCQRA------GGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKP 452
N L +Q+ GV++++E C G I+ DEMGLGKT+Q ++ L S KP
Sbjct: 147 NVLRPHQREGVRFMYE--CVEGKRGSFNGCIMADEMGLGKTLQCVTLTWTLLRQSADCKP 204
Query: 453 SI----VVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSH 508
+I VV P +L++ W++E KW LH L EG
Sbjct: 205 TISKAIVVSPSSLVKNWEKEFTKW--------LHGRMHCLAM--------------EGGS 242
Query: 509 DSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHR 568
+ L +N R + +L+ +YE RL L E G + DEGHR
Sbjct: 243 KEETTRTLE-------QFAMNTSTRCGTPVLLISYETFRLYAHILCKTEVGMVICDEGHR 295
Query: 569 IRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP 628
++N + L+T R++++G PIQN L+E +SL +FV P LG F+ F
Sbjct: 296 LKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYFSLVNFVNPEMLGTATDFKRNFENA 355
Query: 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQ 688
I G A+++ + A L L+ ++RR + LP K E V+ LT Q
Sbjct: 356 ILRGQNADSTDTERERALLKTQELIGLVNQCIIRRTNQILTKYLPVKFEMVVCAKLTAVQ 415
Query: 689 RAVYRAFLASSEVEQIL-----DGSRNSLYGIDVMRKICNHPDLL-----------EREQ 732
+Y FL S +V + L S +L I ++K+CNHPDL+ E Q
Sbjct: 416 LQIYTNFLKSDQVCRSLADCNEKTSLTALSDITTLKKLCNHPDLIYEKLAAREKGFENSQ 475
Query: 733 SCQIPDYG----NPERSEKMKVVAQVLKVWK-DQGHRVLLFAQTQQMLDILESFLIASGY 787
+ +Y NPE S K ++ +L + + +V+L + Q LD+ E Y
Sbjct: 476 NVLPANYKPKDINPELSGKFMLLDFMLAAIRANSDDKVVLISNYTQTLDLFEQLARKRKY 535
Query: 788 EYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPS 846
Y R+DG +K+R ++D +N+ SSD F+F+L++K GG G NL GANR+ +FDPDWNP+
Sbjct: 536 SYVRLDGTMTIKKRSKVVDRFNDPSSDCFLFMLSSKAGGCGLNLIGANRLFMFDPDWNPA 595
Query: 847 TDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-RRFFKA 905
D QA R WR GQK+ +YRL+ G+IEEK+ RQ +K L++ I+ N + + F
Sbjct: 596 NDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESVEKHFTR 655
Query: 906 RNMKDLFTL 914
++KDLF+
Sbjct: 656 DDLKDLFSF 664
>sp|P32657|CHD1_YEAST Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CHD1 PE=1 SV=1
Length = 1468
Score = 266 bits (679), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 173/530 (32%), Positives = 265/530 (50%), Gaps = 69/530 (13%)
Query: 382 EPPFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFL 441
+PPF+ +GG L D+Q G+ W+ L + GI+ DEMGLGKT+Q ++F+
Sbjct: 367 QPPFI--KGG---------ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFI 415
Query: 442 GALHFSNMYK-PSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDT 500
L F+ P I+V P++ + W EKW P + + + Q KS DT
Sbjct: 416 SWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLNC-ICYMGNQ---------KSRDT 465
Query: 501 DNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGY 560
+YE + R K + N +L+TTYE + +L ++W +
Sbjct: 466 IR--------EYEFYTNPRAKGKKTMKFN--------VLLTTYEYILKDRAELGSIKWQF 509
Query: 561 AVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPV 620
+DE HR++N + + + +R+++TG P+QN + EL +L +F+ PG+ +
Sbjct: 510 MAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQE 569
Query: 621 FEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVL 680
+ E N Q + L I P++LRR+K DV LP KTE +L
Sbjct: 570 IDFE-----------NQDEEQEEYIHD----LHRRIQPFILRRLKKDVEKSLPSKTERIL 614
Query: 681 FCSLTEEQRAVYRAFLAS--SEVEQILDGSRNSLYGI-DVMRKICNHPDLLEREQSCQIP 737
L++ Q Y+ L S + G SL I + ++K NHP L + + +
Sbjct: 615 RVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQ 674
Query: 738 DYGNPE------------RSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS 785
+G+ + S KM ++ Q+L K GHRVL+F+Q +MLDIL +L
Sbjct: 675 KFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIK 734
Query: 786 GYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWN 844
G ++R+DG P QR ID +N+ S+ F+F+L+T+ GGLG NL A+ V+IFD DWN
Sbjct: 735 GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWN 794
Query: 845 PSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL 894
P D+QA RA RIGQK V VYRL+++ T+EE+V R K L I+
Sbjct: 795 PQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKMILEYAII 844
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.131 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,105,397
Number of Sequences: 539616
Number of extensions: 20178554
Number of successful extensions: 93697
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 874
Number of HSP's that attempted gapping in prelim test: 83615
Number of HSP's gapped (non-prelim): 8205
length of query: 1231
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1102
effective length of database: 121,958,995
effective search space: 134398812490
effective search space used: 134398812490
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 67 (30.4 bits)