Query 044798
Match_columns 1231
No_of_seqs 537 out of 2532
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:53:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044798.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044798hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0387 Transcription-coupled 100.0 1E-146 3E-151 1291.4 50.1 832 159-1078 4-849 (923)
2 KOG0385 Chromatin remodeling c 100.0 2.9E-95 6E-100 852.2 41.9 474 394-917 159-647 (971)
3 KOG0392 SNF2 family DNA-depend 100.0 6.7E-92 1.4E-96 850.6 41.8 491 390-918 964-1501(1549)
4 KOG1015 Transcription regulato 100.0 2.1E-89 4.5E-94 807.0 38.0 496 389-917 656-1321(1567)
5 KOG0391 SNF2 family DNA-depend 100.0 7.3E-88 1.6E-92 803.9 39.4 485 392-916 606-1431(1958)
6 KOG0389 SNF2 family DNA-depend 100.0 4E-87 8.7E-92 786.9 42.0 461 401-899 399-914 (941)
7 PLN03142 Probable chromatin-re 100.0 2E-84 4.4E-89 819.5 50.9 477 394-917 162-645 (1033)
8 KOG0384 Chromodomain-helicase 100.0 1.9E-85 4.2E-90 799.6 35.4 469 400-915 369-859 (1373)
9 KOG0390 DNA repair protein, SN 100.0 5.4E-82 1.2E-86 766.0 46.6 494 390-918 227-753 (776)
10 KOG0388 SNF2 family DNA-depend 100.0 3.3E-82 7.1E-87 731.1 36.6 467 389-897 555-1178(1185)
11 KOG1002 Nucleotide excision re 100.0 1.7E-77 3.7E-82 673.3 38.7 474 390-913 173-790 (791)
12 KOG0386 Chromatin remodeling c 100.0 4.4E-78 9.4E-83 724.0 27.6 458 400-896 393-861 (1157)
13 KOG1016 Predicted DNA helicase 100.0 2.1E-73 4.5E-78 660.9 28.9 493 390-916 243-892 (1387)
14 KOG4439 RNA polymerase II tran 100.0 5.5E-69 1.2E-73 626.2 35.5 465 395-914 319-901 (901)
15 COG0553 HepA Superfamily II DN 100.0 5.6E-67 1.2E-71 670.6 41.2 481 396-914 333-865 (866)
16 KOG1000 Chromatin remodeling p 100.0 1.4E-55 3.1E-60 498.2 35.4 426 394-895 191-625 (689)
17 PRK04914 ATP-dependent helicas 100.0 9E-55 1.9E-59 549.2 35.1 434 400-898 151-630 (956)
18 KOG1001 Helicase-like transcri 100.0 1.4E-53 3.1E-58 521.7 23.6 438 404-896 135-673 (674)
19 KOG0383 Predicted helicase [Ge 100.0 6.6E-45 1.4E-49 439.8 8.1 394 400-827 294-696 (696)
20 PF00176 SNF2_N: SNF2 family N 100.0 3.7E-41 8.1E-46 379.5 23.3 274 405-728 1-299 (299)
21 TIGR00603 rad25 DNA repair hel 100.0 5.8E-38 1.2E-42 385.6 36.9 342 400-881 254-615 (732)
22 PRK13766 Hef nuclease; Provisi 100.0 3E-34 6.4E-39 365.7 35.3 436 401-895 15-501 (773)
23 KOG0298 DEAD box-containing he 100.0 4E-33 8.8E-38 343.8 18.7 222 421-695 375-637 (1394)
24 COG1111 MPH1 ERCC4-like helica 100.0 1.3E-27 2.9E-32 275.6 33.0 436 401-896 15-504 (542)
25 PHA02558 uvsW UvsW helicase; P 100.0 2.7E-27 5.9E-32 287.7 35.4 337 400-872 113-454 (501)
26 COG1061 SSL2 DNA or RNA helica 100.0 4.1E-27 8.9E-32 281.6 33.2 364 398-885 33-406 (442)
27 KOG0331 ATP-dependent RNA heli 99.9 1.7E-26 3.7E-31 272.8 24.0 310 401-864 113-441 (519)
28 PTZ00110 helicase; Provisional 99.9 1.4E-25 3.1E-30 274.9 32.4 335 383-873 126-484 (545)
29 PRK11776 ATP-dependent RNA hel 99.9 4E-25 8.6E-30 266.4 29.6 315 400-873 25-349 (460)
30 PRK04837 ATP-dependent RNA hel 99.9 9E-25 1.9E-29 260.6 30.1 325 390-872 11-361 (423)
31 PRK01297 ATP-dependent RNA hel 99.9 2.2E-24 4.8E-29 261.0 32.6 325 391-872 91-441 (475)
32 PRK04537 ATP-dependent RNA hel 99.9 1.7E-24 3.7E-29 266.5 31.5 320 391-866 13-359 (572)
33 PRK11192 ATP-dependent RNA hel 99.9 3.2E-24 6.9E-29 256.6 32.9 313 400-866 22-347 (434)
34 KOG0330 ATP-dependent RNA heli 99.9 2.2E-25 4.9E-30 249.0 20.8 325 399-883 81-415 (476)
35 PRK10590 ATP-dependent RNA hel 99.9 1.9E-24 4.2E-29 260.2 29.6 310 400-866 22-347 (456)
36 PLN00206 DEAD-box ATP-dependen 99.9 1.7E-24 3.6E-29 264.4 29.4 331 383-873 117-475 (518)
37 PRK11634 ATP-dependent RNA hel 99.9 4.1E-24 8.9E-29 265.0 29.0 311 400-866 27-347 (629)
38 KOG0354 DEAD-box like helicase 99.9 7.5E-23 1.6E-27 248.4 37.9 439 401-895 62-550 (746)
39 TIGR00614 recQ_fam ATP-depende 99.9 1.6E-23 3.5E-28 253.1 31.7 308 400-867 10-329 (470)
40 TIGR01389 recQ ATP-dependent D 99.9 8.4E-23 1.8E-27 253.5 30.5 305 400-866 12-326 (591)
41 PRK11057 ATP-dependent DNA hel 99.9 9E-23 2E-27 253.4 30.4 305 400-866 24-338 (607)
42 KOG1123 RNA polymerase II tran 99.9 1.3E-23 2.8E-28 239.3 20.7 338 399-878 300-658 (776)
43 COG0513 SrmB Superfamily II DN 99.9 7.6E-23 1.7E-27 249.0 27.0 309 401-872 51-379 (513)
44 PTZ00424 helicase 45; Provisio 99.9 1.4E-22 3.1E-27 239.5 28.4 329 388-873 29-374 (401)
45 TIGR00643 recG ATP-dependent D 99.9 3.9E-21 8.5E-26 239.7 32.1 305 401-865 235-560 (630)
46 TIGR03817 DECH_helic helicase/ 99.9 4.1E-21 8.8E-26 242.6 31.9 333 400-880 35-393 (742)
47 PLN03137 ATP-dependent DNA hel 99.9 3.8E-21 8.3E-26 242.7 29.5 309 400-868 459-784 (1195)
48 PRK10917 ATP-dependent DNA hel 99.9 8E-21 1.7E-25 238.6 30.8 307 401-870 261-586 (681)
49 PRK13767 ATP-dependent helicas 99.9 9.3E-21 2E-25 243.6 32.0 325 400-868 31-395 (876)
50 TIGR00580 mfd transcription-re 99.9 9.6E-21 2.1E-25 241.9 29.3 307 401-872 451-769 (926)
51 PRK11448 hsdR type I restricti 99.9 1.4E-20 2.9E-25 244.3 30.7 355 401-870 413-815 (1123)
52 PRK10689 transcription-repair 99.9 2.6E-20 5.6E-25 242.5 29.9 305 401-870 600-916 (1147)
53 KOG0333 U5 snRNP-like RNA heli 99.9 2.3E-20 5E-25 214.9 22.3 354 386-873 244-624 (673)
54 KOG0345 ATP-dependent RNA heli 99.9 3.2E-20 6.8E-25 212.0 22.0 315 400-867 27-360 (567)
55 KOG0343 RNA Helicase [RNA proc 99.8 3.3E-20 7.2E-25 214.3 21.5 321 401-886 91-434 (758)
56 KOG0342 ATP-dependent RNA heli 99.8 1.2E-20 2.7E-25 216.8 16.9 313 401-863 104-429 (543)
57 KOG0328 Predicted ATP-dependen 99.8 3.3E-20 7.2E-25 200.2 18.4 315 404-875 52-375 (400)
58 KOG0350 DEAD-box ATP-dependent 99.8 8.9E-20 1.9E-24 209.4 22.7 354 400-873 158-540 (620)
59 PRK02362 ski2-like helicase; P 99.8 9.9E-19 2.2E-23 222.2 34.2 316 400-871 22-395 (737)
60 TIGR01587 cas3_core CRISPR-ass 99.8 6.9E-19 1.5E-23 205.3 28.2 314 423-873 2-338 (358)
61 KOG0338 ATP-dependent RNA heli 99.8 3.6E-19 7.8E-24 204.4 22.5 322 401-882 203-540 (691)
62 KOG0347 RNA helicase [RNA proc 99.8 3.5E-19 7.6E-24 206.0 21.2 101 763-866 464-564 (731)
63 KOG0340 ATP-dependent RNA heli 99.8 5.5E-19 1.2E-23 196.2 20.4 308 403-863 31-353 (442)
64 KOG0335 ATP-dependent RNA heli 99.8 1.4E-19 3.1E-24 211.3 16.4 321 400-867 95-440 (482)
65 KOG0348 ATP-dependent RNA heli 99.8 1E-18 2.2E-23 201.7 21.9 136 746-888 407-566 (708)
66 TIGR03714 secA2 accessory Sec 99.8 3.3E-18 7.1E-23 211.9 28.0 118 743-865 405-531 (762)
67 PRK01172 ski2-like helicase; P 99.8 9.1E-18 2E-22 211.7 32.5 307 401-867 22-372 (674)
68 TIGR02621 cas3_GSU0051 CRISPR- 99.8 3.6E-18 7.8E-23 213.4 27.2 118 760-882 270-403 (844)
69 PRK00254 ski2-like helicase; P 99.8 1.6E-17 3.4E-22 210.8 31.9 318 400-873 22-388 (720)
70 KOG4284 DEAD box protein [Tran 99.8 3.7E-18 7.9E-23 199.8 18.0 316 404-870 50-377 (980)
71 PRK09200 preprotein translocas 99.8 4E-17 8.6E-22 204.0 27.4 131 743-882 409-547 (790)
72 PRK12898 secA preprotein trans 99.8 2.3E-16 5E-21 193.6 32.8 132 742-882 453-592 (656)
73 PRK09401 reverse gyrase; Revie 99.8 5.4E-17 1.2E-21 212.1 27.8 296 401-858 80-431 (1176)
74 PHA02653 RNA helicase NPH-II; 99.8 9.2E-17 2E-21 199.6 27.8 108 761-875 394-516 (675)
75 TIGR00348 hsdR type I site-spe 99.8 2.5E-16 5.4E-21 197.6 31.5 358 401-871 238-649 (667)
76 TIGR00963 secA preprotein tran 99.8 5.4E-17 1.2E-21 200.1 24.4 120 743-866 386-512 (745)
77 KOG0341 DEAD-box protein abstr 99.8 6E-18 1.3E-22 188.7 13.8 337 381-879 164-534 (610)
78 KOG0339 ATP-dependent RNA heli 99.7 5.3E-17 1.2E-21 186.4 21.6 320 401-876 245-578 (731)
79 KOG0332 ATP-dependent RNA heli 99.7 7E-17 1.5E-21 180.5 21.1 127 744-876 314-447 (477)
80 KOG0336 ATP-dependent RNA heli 99.7 4.9E-17 1.1E-21 182.6 18.7 326 384-863 217-564 (629)
81 PRK09751 putative ATP-dependen 99.7 2.7E-16 5.9E-21 206.5 27.5 96 761-858 243-371 (1490)
82 COG1201 Lhr Lhr-like helicases 99.7 7.7E-16 1.7E-20 191.8 29.7 333 399-888 20-375 (814)
83 COG1200 RecG RecG-like helicas 99.7 5.9E-16 1.3E-20 186.5 26.6 303 400-862 261-582 (677)
84 TIGR03158 cas3_cyano CRISPR-as 99.7 1.5E-15 3.3E-20 177.8 27.1 85 761-856 271-357 (357)
85 COG0514 RecQ Superfamily II DN 99.7 1.6E-15 3.4E-20 183.3 27.1 314 400-876 16-340 (590)
86 KOG0326 ATP-dependent RNA heli 99.7 2E-17 4.2E-22 181.4 9.5 303 401-861 107-419 (459)
87 TIGR01054 rgy reverse gyrase. 99.7 9.1E-16 2E-20 201.0 26.2 280 401-843 78-409 (1171)
88 KOG0334 RNA helicase [RNA proc 99.7 1.9E-16 4.2E-21 196.3 16.6 124 744-872 596-719 (997)
89 COG4096 HsdR Type I site-speci 99.7 5.6E-16 1.2E-20 188.5 17.8 350 395-870 159-545 (875)
90 COG1205 Distinct helicase fami 99.7 6.8E-15 1.5E-19 187.5 27.9 332 401-882 70-431 (851)
91 PRK05580 primosome assembly pr 99.7 1.1E-14 2.4E-19 183.1 28.7 355 401-868 144-546 (679)
92 TIGR01970 DEAH_box_HrpB ATP-de 99.7 5.3E-15 1.2E-19 187.8 25.7 107 762-873 209-336 (819)
93 cd00079 HELICc Helicase superf 99.7 6E-16 1.3E-20 152.9 11.5 120 746-867 12-131 (131)
94 KOG0346 RNA helicase [RNA proc 99.6 6E-15 1.3E-19 167.9 20.2 308 403-868 43-407 (569)
95 PRK11664 ATP-dependent RNA hel 99.6 3E-14 6.6E-19 181.3 27.1 108 762-874 212-340 (812)
96 PRK14701 reverse gyrase; Provi 99.6 3.3E-14 7.2E-19 190.0 28.0 335 401-861 79-446 (1638)
97 PF04851 ResIII: Type III rest 99.6 3.1E-15 6.8E-20 156.2 14.7 164 401-596 3-183 (184)
98 COG1204 Superfamily II helicas 99.6 1.8E-14 3.9E-19 181.5 22.9 308 401-860 31-395 (766)
99 KOG0344 ATP-dependent RNA heli 99.6 4E-15 8.6E-20 175.4 14.8 120 744-867 371-492 (593)
100 COG4889 Predicted helicase [Ge 99.6 3.1E-14 6.7E-19 171.1 21.9 396 394-863 154-577 (1518)
101 PRK13104 secA preprotein trans 99.6 3.1E-13 6.6E-18 169.3 31.0 122 742-867 424-583 (896)
102 TIGR00595 priA primosomal prot 99.6 1.3E-13 2.9E-18 167.9 26.0 92 775-868 271-378 (505)
103 PRK12906 secA preprotein trans 99.6 3.9E-13 8.5E-18 167.7 28.4 120 743-866 421-548 (796)
104 COG1202 Superfamily II helicas 99.6 1.7E-13 3.6E-18 160.1 22.2 326 390-873 197-553 (830)
105 PRK09694 helicase Cas3; Provis 99.5 1E-12 2.2E-17 167.5 29.2 102 757-861 555-665 (878)
106 smart00487 DEXDc DEAD-like hel 99.5 4.5E-14 9.8E-19 147.4 14.2 156 400-597 7-172 (201)
107 KOG0327 Translation initiation 99.5 6.7E-14 1.5E-18 158.4 15.5 119 747-873 252-370 (397)
108 PRK12904 preprotein translocas 99.5 2.5E-12 5.5E-17 161.1 30.1 121 743-867 411-569 (830)
109 TIGR00631 uvrb excinuclease AB 99.5 3.8E-12 8.2E-17 159.0 31.1 126 744-874 424-554 (655)
110 PRK11131 ATP-dependent RNA hel 99.5 8.3E-13 1.8E-17 171.5 25.9 108 761-875 285-413 (1294)
111 PF00271 Helicase_C: Helicase 99.5 2.5E-14 5.3E-19 130.5 6.4 78 780-859 1-78 (78)
112 PRK13107 preprotein translocas 99.5 5.6E-12 1.2E-16 157.7 29.2 122 742-867 429-587 (908)
113 cd00046 DEXDc DEAD-like helica 99.5 2.7E-13 5.9E-18 133.3 13.6 136 422-595 2-144 (144)
114 COG1197 Mfd Transcription-repa 99.5 4.1E-12 8.9E-17 161.0 26.5 311 402-872 595-912 (1139)
115 PRK05298 excinuclease ABC subu 99.5 3E-11 6.5E-16 151.7 33.1 125 744-873 428-557 (652)
116 TIGR01967 DEAH_box_HrpA ATP-de 99.4 7E-12 1.5E-16 163.5 22.5 109 761-876 278-407 (1283)
117 PRK12900 secA preprotein trans 99.4 9.4E-11 2E-15 147.5 28.1 117 744-864 580-704 (1025)
118 smart00490 HELICc helicase sup 99.4 1.2E-12 2.6E-17 118.6 7.9 81 777-859 2-82 (82)
119 COG4098 comFA Superfamily II D 99.4 9.6E-10 2.1E-14 123.2 31.7 297 400-861 96-404 (441)
120 KOG0337 ATP-dependent RNA heli 99.3 3.5E-12 7.5E-17 145.2 10.7 315 400-873 42-368 (529)
121 PRK12899 secA preprotein trans 99.3 6.7E-10 1.4E-14 139.7 30.2 121 743-867 549-677 (970)
122 COG1203 CRISPR-associated heli 99.3 1.5E-10 3.3E-15 147.3 22.5 129 759-890 437-569 (733)
123 KOG0329 ATP-dependent RNA heli 99.3 7.7E-11 1.7E-15 126.8 15.7 273 403-862 66-346 (387)
124 KOG0351 ATP-dependent DNA heli 99.3 1.5E-10 3.3E-15 147.7 20.3 310 400-868 263-589 (941)
125 PF00270 DEAD: DEAD/DEAH box h 99.3 6.7E-11 1.5E-15 122.5 14.1 157 404-602 2-168 (169)
126 cd00268 DEADc DEAD-box helicas 99.2 1.2E-10 2.7E-15 124.9 15.7 154 401-596 21-185 (203)
127 KOG0952 DNA/RNA helicase MER3/ 99.2 2.1E-09 4.5E-14 133.7 24.7 103 759-863 346-481 (1230)
128 KOG0352 ATP-dependent DNA heli 99.2 6.5E-10 1.4E-14 126.7 17.9 103 764-868 257-359 (641)
129 PRK12326 preprotein translocas 99.2 4E-09 8.6E-14 130.0 24.7 121 743-867 408-543 (764)
130 TIGR01407 dinG_rel DnaQ family 99.1 2.8E-08 6.1E-13 129.0 31.0 86 401-488 245-336 (850)
131 PRK13103 secA preprotein trans 99.1 2.3E-08 5E-13 126.0 25.9 122 742-867 429-587 (913)
132 KOG0951 RNA helicase BRR2, DEA 99.0 4.9E-09 1.1E-13 131.7 18.9 71 786-859 607-688 (1674)
133 COG0556 UvrB Helicase subunit 99.0 4.3E-07 9.4E-12 107.2 30.8 134 746-882 430-568 (663)
134 KOG0349 Putative DEAD-box RNA 99.0 1E-09 2.2E-14 125.1 8.2 95 762-858 505-602 (725)
135 PRK12903 secA preprotein trans 99.0 6.7E-08 1.4E-12 120.8 24.7 120 743-867 407-535 (925)
136 KOG0353 ATP-dependent DNA heli 99.0 3.4E-08 7.3E-13 111.2 19.5 313 400-869 93-465 (695)
137 COG1110 Reverse gyrase [DNA re 99.0 2.3E-07 5E-12 116.0 28.5 319 401-842 82-416 (1187)
138 PF13872 AAA_34: P-loop contai 98.9 1.2E-08 2.5E-13 115.2 15.0 245 381-694 17-302 (303)
139 PF11496 HDA2-3: Class II hist 98.9 1.9E-08 4E-13 115.0 16.8 208 676-884 4-256 (297)
140 TIGR03117 cas_csf4 CRISPR-asso 98.7 7.1E-06 1.5E-10 102.3 30.9 86 406-491 2-93 (636)
141 TIGR00596 rad1 DNA repair prot 98.7 5.7E-07 1.2E-11 114.8 21.7 94 535-629 7-108 (814)
142 COG4581 Superfamily II RNA hel 98.7 5.6E-07 1.2E-11 115.3 20.3 145 400-595 118-270 (1041)
143 CHL00122 secA preprotein trans 98.7 5.8E-06 1.3E-10 104.4 28.3 85 743-830 405-490 (870)
144 KOG0947 Cytoplasmic exosomal R 98.7 1.7E-06 3.7E-11 107.4 22.5 140 401-595 297-444 (1248)
145 COG1198 PriA Primosomal protei 98.6 2E-06 4.3E-11 108.0 22.4 371 399-872 196-604 (730)
146 TIGR00604 rad3 DNA repair heli 98.6 7.6E-06 1.7E-10 104.6 28.2 71 401-471 10-82 (705)
147 KOG1513 Nuclear helicase MOP-3 98.6 2.5E-06 5.5E-11 103.6 21.6 253 382-694 247-536 (1300)
148 PRK12902 secA preprotein trans 98.6 6.6E-06 1.4E-10 103.9 25.6 86 743-831 420-506 (939)
149 COG1199 DinG Rad3-related DNA 98.6 1.9E-05 4.2E-10 100.2 28.7 81 759-843 476-559 (654)
150 PRK08074 bifunctional ATP-depe 98.6 4E-05 8.7E-10 100.7 32.3 89 401-490 257-351 (928)
151 PRK12901 secA preprotein trans 98.5 7.4E-06 1.6E-10 104.3 23.1 120 744-867 610-737 (1112)
152 PRK07246 bifunctional ATP-depe 98.4 5.1E-05 1.1E-09 98.3 28.3 92 749-845 634-728 (820)
153 PRK11747 dinG ATP-dependent DN 98.4 0.00017 3.6E-09 92.2 31.0 92 748-843 520-616 (697)
154 COG0610 Type I site-specific r 98.4 3.2E-05 7E-10 101.4 24.7 139 419-599 272-417 (962)
155 KOG0922 DEAH-box RNA helicase 98.4 2.4E-05 5.2E-10 95.3 21.0 108 763-875 259-392 (674)
156 KOG0950 DNA polymerase theta/e 98.3 5.2E-05 1.1E-09 95.3 23.4 348 401-860 223-598 (1008)
157 KOG0948 Nuclear exosomal RNA h 98.2 1.7E-05 3.7E-10 96.7 16.1 139 401-595 129-276 (1041)
158 COG1643 HrpA HrpA-like helicas 98.2 4.3E-05 9.3E-10 97.6 19.9 109 762-876 259-390 (845)
159 PF02399 Herpes_ori_bp: Origin 98.2 7.2E-05 1.6E-09 93.9 21.1 109 751-868 271-385 (824)
160 KOG0920 ATP-dependent RNA heli 98.2 6.9E-05 1.5E-09 95.7 21.1 121 747-873 396-544 (924)
161 COG0653 SecA Preprotein transl 98.1 6.9E-05 1.5E-09 94.6 17.1 114 742-859 409-533 (822)
162 PRK15483 type III restriction- 98.0 5.2E-05 1.1E-09 97.5 15.5 193 403-631 8-278 (986)
163 KOG0924 mRNA splicing factor A 98.0 0.00011 2.4E-09 89.0 16.0 128 764-894 565-721 (1042)
164 KOG0949 Predicted helicase, DE 98.0 0.00099 2.2E-08 83.9 24.4 148 418-608 524-682 (1330)
165 PF07652 Flavi_DEAD: Flaviviru 98.0 4.2E-05 9E-10 78.3 10.0 128 421-596 5-137 (148)
166 smart00488 DEXDc2 DEAD-like he 98.0 7.9E-05 1.7E-09 85.5 13.6 71 402-472 9-84 (289)
167 smart00489 DEXDc3 DEAD-like he 98.0 7.9E-05 1.7E-09 85.5 13.6 71 402-472 9-84 (289)
168 KOG0926 DEAH-box RNA helicase 97.9 0.00013 2.9E-09 89.6 14.9 78 789-872 607-703 (1172)
169 KOG0925 mRNA splicing factor A 97.9 0.00032 7E-09 82.5 16.1 108 763-876 254-390 (699)
170 TIGR02562 cas3_yersinia CRISPR 97.8 0.004 8.7E-08 80.6 26.7 202 402-605 409-644 (1110)
171 PF13871 Helicase_C_4: Helicas 97.7 6.3E-05 1.4E-09 85.1 7.1 94 803-898 52-153 (278)
172 PF13086 AAA_11: AAA domain; P 97.6 9.6E-05 2.1E-09 80.1 7.3 67 401-471 1-75 (236)
173 KOG0953 Mitochondrial RNA heli 97.5 0.00032 6.9E-09 83.9 9.4 101 760-863 356-466 (700)
174 KOG0923 mRNA splicing factor A 97.5 0.002 4.3E-08 78.5 15.4 123 763-894 474-630 (902)
175 PF12340 DUF3638: Protein of u 96.8 0.0065 1.4E-07 67.2 10.5 72 401-474 23-94 (229)
176 PRK10536 hypothetical protein; 96.8 0.0078 1.7E-07 67.8 11.1 156 402-599 60-216 (262)
177 PRK14873 primosome assembly pr 96.7 0.013 2.7E-07 74.6 12.7 126 429-596 169-304 (665)
178 PF02562 PhoH: PhoH-like prote 96.5 0.0075 1.6E-07 65.9 8.4 156 402-601 5-161 (205)
179 PF13604 AAA_30: AAA domain; P 96.4 0.013 2.9E-07 63.5 9.1 59 401-463 1-59 (196)
180 KOG1803 DNA helicase [Replicat 96.3 0.0052 1.1E-07 74.9 5.8 66 399-469 183-249 (649)
181 PF07517 SecA_DEAD: SecA DEAD- 96.2 0.056 1.2E-06 61.4 13.1 121 401-570 77-210 (266)
182 COG3587 Restriction endonuclea 96.2 0.02 4.4E-07 72.1 10.1 46 814-859 483-528 (985)
183 PF13401 AAA_22: AAA domain; P 96.1 0.011 2.3E-07 58.8 6.2 43 551-595 81-125 (131)
184 PF09848 DUF2075: Uncharacteri 96.0 0.023 4.9E-07 67.2 9.6 45 423-467 4-48 (352)
185 KOG1805 DNA replication helica 95.9 0.058 1.3E-06 69.0 12.7 180 383-597 647-831 (1100)
186 KOG1802 RNA helicase nonsense 95.8 0.027 5.8E-07 69.1 8.7 168 400-577 409-588 (935)
187 KOG4150 Predicted ATP-dependen 95.7 0.046 9.9E-07 65.9 10.1 116 743-860 506-629 (1034)
188 COG0553 HepA Superfamily II DN 95.7 0.0051 1.1E-07 80.3 2.4 70 401-472 84-155 (866)
189 PF13307 Helicase_C_2: Helicas 95.7 0.031 6.8E-07 59.0 7.8 81 757-843 4-92 (167)
190 TIGR00376 DNA helicase, putati 95.5 0.1 2.2E-06 66.5 12.7 68 400-472 156-224 (637)
191 KOG1132 Helicase of the DEAD s 95.5 0.1 2.2E-06 66.4 12.2 89 394-482 14-143 (945)
192 KOG1131 RNA polymerase II tran 95.3 0.11 2.3E-06 62.6 11.0 71 400-470 15-88 (755)
193 TIGR01447 recD exodeoxyribonuc 95.3 0.078 1.7E-06 66.8 10.6 57 404-464 148-207 (586)
194 TIGR01448 recD_rel helicase, p 94.8 0.18 3.8E-06 65.3 12.2 64 401-468 323-386 (720)
195 PRK04296 thymidine kinase; Pro 94.7 0.082 1.8E-06 57.1 7.5 34 423-458 5-38 (190)
196 PRK11773 uvrD DNA-dependent he 94.6 1.9 4.1E-05 56.1 20.7 70 398-473 6-78 (721)
197 PRK10875 recD exonuclease V su 94.3 0.11 2.4E-06 65.7 8.5 61 403-467 154-216 (615)
198 cd00009 AAA The AAA+ (ATPases 93.5 0.83 1.8E-05 44.9 11.6 36 409-444 6-43 (151)
199 PF06862 DUF1253: Protein of u 93.2 0.98 2.1E-05 54.9 13.3 126 745-871 280-413 (442)
200 PRK10919 ATP-dependent DNA hel 93.0 5.2 0.00011 51.7 20.2 67 401-473 2-71 (672)
201 PRK12723 flagellar biosynthesi 92.9 1 2.3E-05 54.1 13.0 69 542-612 241-314 (388)
202 KOG0951 RNA helicase BRR2, DEA 92.2 0.41 8.8E-06 63.0 8.5 131 419-597 1158-1300(1674)
203 TIGR01073 pcrA ATP-dependent D 92.1 6 0.00013 51.6 19.4 54 400-459 3-58 (726)
204 PHA02533 17 large terminase pr 92.1 0.67 1.5E-05 57.9 10.3 55 401-459 59-113 (534)
205 smart00382 AAA ATPases associa 92.1 0.76 1.7E-05 44.5 8.8 45 421-467 3-47 (148)
206 PF02270 TFIIF_beta: Transcrip 91.9 0.22 4.7E-06 57.1 5.4 61 1164-1230 213-274 (275)
207 TIGR02881 spore_V_K stage V sp 91.7 1.1 2.4E-05 50.7 10.8 25 422-446 44-68 (261)
208 PRK12402 replication factor C 91.7 0.89 1.9E-05 52.9 10.3 41 406-446 20-62 (337)
209 TIGR03015 pepcterm_ATPase puta 91.1 1.2 2.5E-05 50.2 10.2 43 402-444 24-67 (269)
210 COG1875 NYN ribonuclease and A 91.1 1.1 2.5E-05 52.6 9.9 39 557-597 351-389 (436)
211 PRK05703 flhF flagellar biosyn 90.6 2.3 5E-05 51.8 12.6 55 557-612 299-359 (424)
212 PF05876 Terminase_GpA: Phage 90.4 0.47 1E-05 59.6 6.8 171 394-607 9-191 (557)
213 PLN03025 replication factor C 88.9 4.2 9.1E-05 47.5 12.7 40 406-445 18-59 (319)
214 PRK11889 flhF flagellar biosyn 88.3 8 0.00017 46.7 14.3 95 542-636 304-414 (436)
215 PRK06526 transposase; Provisio 88.0 2.6 5.7E-05 47.8 9.8 55 407-471 89-143 (254)
216 PRK07003 DNA polymerase III su 87.8 2.6 5.6E-05 54.4 10.5 41 406-446 21-64 (830)
217 TIGR02880 cbbX_cfxQ probable R 87.4 2.2 4.7E-05 49.2 8.9 28 422-449 60-87 (284)
218 PF13245 AAA_19: Part of AAA d 87.3 1.6 3.4E-05 40.4 6.2 44 421-464 11-56 (76)
219 PRK09112 DNA polymerase III su 87.1 4.9 0.00011 47.8 11.8 46 400-446 23-71 (351)
220 PRK14956 DNA polymerase III su 86.9 4.2 9.2E-05 50.1 11.3 42 405-446 22-66 (484)
221 PRK12323 DNA polymerase III su 86.6 7.4 0.00016 49.7 13.4 25 422-446 40-64 (700)
222 PHA03368 DNA packaging termina 85.9 1.2 2.6E-05 56.3 6.0 61 421-481 255-320 (738)
223 PF05793 TFIIF_alpha: Transcri 85.8 0.4 8.7E-06 59.8 1.9 57 1169-1227 466-527 (527)
224 CHL00181 cbbX CbbX; Provisiona 85.2 3.6 7.9E-05 47.5 9.2 26 423-448 62-87 (287)
225 PRK14949 DNA polymerase III su 84.9 5.8 0.00013 52.2 11.6 25 422-446 39-64 (944)
226 TIGR02928 orc1/cdc6 family rep 84.9 7.7 0.00017 45.8 12.1 44 402-445 19-65 (365)
227 TIGR02768 TraA_Ti Ti-type conj 84.8 5.6 0.00012 52.0 11.7 59 401-464 352-410 (744)
228 PF00448 SRP54: SRP54-type pro 84.8 3.6 7.7E-05 44.9 8.5 134 424-612 5-142 (196)
229 PRK14963 DNA polymerase III su 84.7 8.1 0.00017 48.2 12.5 43 406-448 19-64 (504)
230 cd01121 Sms Sms (bacterial rad 83.8 7.2 0.00016 46.8 11.2 47 422-470 84-130 (372)
231 TIGR00362 DnaA chromosomal rep 83.6 9.3 0.0002 46.2 12.2 36 422-457 138-173 (405)
232 PRK14087 dnaA chromosomal repl 83.0 8.9 0.00019 47.2 11.8 47 421-467 142-188 (450)
233 PRK00149 dnaA chromosomal repl 82.2 8.1 0.00018 47.4 11.1 42 421-462 149-190 (450)
234 smart00491 HELICc2 helicase su 81.9 6 0.00013 41.0 8.3 53 790-843 23-80 (142)
235 PRK10917 ATP-dependent DNA hel 81.8 8.6 0.00019 49.8 11.6 97 742-839 290-390 (681)
236 PF06733 DEAD_2: DEAD_2; Inte 81.8 1.3 2.8E-05 47.0 3.5 39 532-570 116-158 (174)
237 COG0464 SpoVK ATPases of the A 81.5 8.2 0.00018 47.9 10.9 67 400-471 248-322 (494)
238 PRK08727 hypothetical protein; 81.4 13 0.00028 41.5 11.4 25 422-446 43-67 (233)
239 PRK14974 cell division protein 81.2 15 0.00033 43.5 12.4 46 423-470 143-192 (336)
240 PRK14961 DNA polymerase III su 80.4 12 0.00026 44.6 11.4 41 405-445 20-63 (363)
241 PRK08769 DNA polymerase III su 80.4 9.6 0.00021 44.8 10.3 51 398-448 1-54 (319)
242 PRK13889 conjugal transfer rel 80.2 11 0.00023 50.7 11.7 58 401-463 346-403 (988)
243 PRK07764 DNA polymerase III su 80.0 12 0.00027 49.3 12.2 25 423-447 40-64 (824)
244 PTZ00112 origin recognition co 79.9 14 0.0003 48.6 12.0 50 394-445 753-806 (1164)
245 PHA03372 DNA packaging termina 79.9 2.7 5.8E-05 52.6 5.7 52 427-478 209-265 (668)
246 PTZ00293 thymidine kinase; Pro 79.8 10 0.00022 42.0 9.6 35 424-460 8-42 (211)
247 PRK08116 hypothetical protein; 79.5 14 0.00031 42.3 11.1 46 420-467 114-159 (268)
248 PF00580 UvrD-helicase: UvrD/R 79.4 3.5 7.6E-05 46.9 6.3 54 402-461 1-56 (315)
249 TIGR00595 priA primosomal prot 79.0 13 0.00029 46.3 11.6 96 742-840 5-101 (505)
250 PRK14952 DNA polymerase III su 78.9 13 0.00028 47.2 11.5 43 405-447 17-62 (584)
251 PRK05707 DNA polymerase III su 78.3 10 0.00022 44.8 9.7 48 401-448 3-50 (328)
252 PRK05580 primosome assembly pr 78.2 17 0.00037 47.1 12.5 96 742-840 170-266 (679)
253 cd01120 RecA-like_NTPases RecA 78.1 18 0.00039 36.5 10.4 34 424-459 3-36 (165)
254 KOG2905 Transcription initiati 78.1 1.1 2.5E-05 49.4 1.7 60 1165-1230 184-244 (254)
255 PRK14088 dnaA chromosomal repl 77.9 26 0.00056 43.1 13.4 36 422-457 132-167 (440)
256 PRK14958 DNA polymerase III su 77.9 18 0.00039 45.2 12.2 42 406-447 21-65 (509)
257 PRK06645 DNA polymerase III su 77.9 7.1 0.00015 48.7 8.6 43 405-447 25-70 (507)
258 PF05621 TniB: Bacterial TniB 77.6 22 0.00047 41.5 11.8 40 403-442 39-83 (302)
259 PRK14722 flhF flagellar biosyn 77.6 12 0.00026 44.9 10.1 40 421-460 138-177 (374)
260 PRK07940 DNA polymerase III su 77.5 21 0.00046 43.2 12.3 26 422-447 38-63 (394)
261 PF13173 AAA_14: AAA domain 77.5 12 0.00025 37.6 8.6 42 557-599 61-102 (128)
262 KOG0991 Replication factor C, 77.0 3 6.6E-05 46.4 4.4 25 421-445 49-73 (333)
263 KOG0442 Structure-specific end 76.8 1.1E+02 0.0024 40.1 18.3 96 536-632 100-203 (892)
264 PRK08084 DNA replication initi 76.8 15 0.00032 41.1 10.1 25 421-445 46-70 (235)
265 PRK07994 DNA polymerase III su 76.4 12 0.00026 48.0 10.2 42 406-447 21-65 (647)
266 PRK13826 Dtr system oriT relax 76.3 14 0.00029 50.2 11.0 58 401-463 381-438 (1102)
267 TIGR00643 recG ATP-dependent D 76.3 15 0.00031 47.3 11.1 96 742-838 264-363 (630)
268 PRK00440 rfc replication facto 75.8 29 0.00063 39.9 12.5 39 406-444 22-62 (319)
269 PRK14951 DNA polymerase III su 75.4 30 0.00065 44.3 13.3 42 406-447 21-65 (618)
270 TIGR03689 pup_AAA proteasome A 75.2 16 0.00035 45.7 10.6 26 419-444 215-240 (512)
271 PRK14955 DNA polymerase III su 75.1 21 0.00045 43.2 11.5 41 406-446 21-64 (397)
272 PRK14960 DNA polymerase III su 75.0 25 0.00054 45.2 12.3 41 406-446 20-63 (702)
273 PHA02544 44 clamp loader, smal 75.0 19 0.00041 41.6 10.8 49 557-605 100-150 (316)
274 PRK08451 DNA polymerase III su 74.8 28 0.00062 43.8 12.7 42 406-447 19-63 (535)
275 PRK11054 helD DNA helicase IV; 74.6 8.1 0.00018 50.0 8.2 79 401-485 196-279 (684)
276 COG1484 DnaC DNA replication p 74.3 9 0.0002 43.5 7.6 72 393-470 82-153 (254)
277 PRK14086 dnaA chromosomal repl 73.8 21 0.00046 45.4 11.3 44 422-465 316-359 (617)
278 PRK09111 DNA polymerase III su 73.6 17 0.00038 46.3 10.6 42 406-447 29-73 (598)
279 COG3421 Uncharacterized protei 73.0 3.6 7.7E-05 51.1 4.1 40 427-467 4-44 (812)
280 TIGR03345 VI_ClpV1 type VI sec 73.0 20 0.00043 47.8 11.3 35 410-444 196-232 (852)
281 COG0593 DnaA ATPase involved i 72.8 17 0.00037 44.0 9.8 53 557-609 175-235 (408)
282 KOG0952 DNA/RNA helicase MER3/ 72.6 3.4 7.3E-05 54.2 4.0 110 420-572 943-1061(1230)
283 PRK08058 DNA polymerase III su 72.5 27 0.0006 41.1 11.3 48 400-447 5-55 (329)
284 PF00004 AAA: ATPase family as 72.5 12 0.00026 36.7 7.2 21 424-444 2-22 (132)
285 COG3267 ExeA Type II secretory 72.3 22 0.00047 40.5 9.7 46 422-470 53-104 (269)
286 PF13177 DNA_pol3_delta2: DNA 71.8 43 0.00092 35.3 11.5 47 406-452 2-51 (162)
287 COG3973 Superfamily I DNA and 71.6 8.5 0.00018 48.1 6.8 67 397-468 208-278 (747)
288 PRK08691 DNA polymerase III su 71.4 22 0.00048 45.9 10.7 42 406-447 21-65 (709)
289 PRK06090 DNA polymerase III su 70.8 46 0.00099 39.3 12.5 48 401-448 3-53 (319)
290 PRK00411 cdc6 cell division co 70.5 39 0.00084 40.4 12.2 28 421-448 56-83 (394)
291 PRK14948 DNA polymerase III su 70.1 22 0.00047 45.7 10.4 43 405-447 20-65 (620)
292 PRK11823 DNA repair protein Ra 69.8 26 0.00057 43.1 10.7 47 423-471 83-129 (446)
293 PHA03333 putative ATPase subun 69.6 32 0.0007 44.2 11.4 48 410-459 178-225 (752)
294 PRK12422 chromosomal replicati 69.6 19 0.00041 44.3 9.4 36 421-458 142-177 (445)
295 PRK07952 DNA replication prote 69.5 35 0.00075 38.7 10.8 52 404-457 79-134 (244)
296 PRK06731 flhF flagellar biosyn 69.3 74 0.0016 36.7 13.5 90 544-633 140-245 (270)
297 TIGR03346 chaperone_ClpB ATP-d 69.0 20 0.00042 47.8 10.1 36 409-444 181-218 (852)
298 PRK12727 flagellar biosynthesi 68.8 60 0.0013 40.9 13.3 34 424-457 354-387 (559)
299 PRK14962 DNA polymerase III su 68.6 31 0.00067 42.8 11.0 24 423-446 39-62 (472)
300 PRK07471 DNA polymerase III su 68.6 31 0.00068 41.4 10.7 43 406-448 24-69 (365)
301 COG1419 FlhF Flagellar GTP-bin 68.5 85 0.0018 38.1 14.1 73 538-613 264-341 (407)
302 PRK14712 conjugal transfer nic 68.5 28 0.00061 48.9 11.5 65 397-463 831-897 (1623)
303 PRK13709 conjugal transfer nic 68.0 28 0.0006 49.5 11.4 65 397-463 963-1029(1747)
304 PRK14964 DNA polymerase III su 67.7 52 0.0011 41.1 12.6 42 406-447 18-62 (491)
305 PRK11034 clpA ATP-dependent Cl 67.7 23 0.0005 46.5 10.0 26 419-444 206-231 (758)
306 TIGR00580 mfd transcription-re 67.4 32 0.0007 46.2 11.5 96 742-838 480-579 (926)
307 COG3972 Superfamily I DNA and 67.4 18 0.00039 44.4 8.2 39 429-467 185-224 (660)
308 PRK14950 DNA polymerase III su 67.3 42 0.0009 42.9 12.1 42 405-446 20-64 (585)
309 PF12157 DUF3591: Protein of u 66.8 9.7 0.00021 46.7 6.0 49 1179-1231 255-304 (457)
310 PRK05642 DNA replication initi 66.8 49 0.0011 37.0 11.3 37 558-594 98-138 (234)
311 PRK06871 DNA polymerase III su 66.6 55 0.0012 38.7 12.0 47 402-448 3-52 (325)
312 PRK07993 DNA polymerase III su 66.4 42 0.0009 39.8 11.1 47 401-447 2-51 (334)
313 PRK14957 DNA polymerase III su 66.4 39 0.00085 42.7 11.4 41 406-446 21-64 (546)
314 CHL00095 clpC Clp protease ATP 66.1 16 0.00036 48.3 8.5 26 419-444 199-224 (821)
315 KOG0921 Dosage compensation co 64.9 42 0.00091 44.0 11.0 65 537-602 474-542 (1282)
316 PRK00771 signal recognition pa 64.7 39 0.00085 41.5 10.7 35 422-458 97-131 (437)
317 PRK10416 signal recognition pa 64.4 58 0.0013 38.3 11.7 32 425-458 119-150 (318)
318 cd03115 SRP The signal recogni 63.9 78 0.0017 33.2 11.6 34 423-458 3-37 (173)
319 COG1435 Tdk Thymidine kinase [ 63.9 24 0.00051 38.7 7.6 54 538-594 62-118 (201)
320 KOG0730 AAA+-type ATPase [Post 63.6 54 0.0012 41.8 11.5 64 402-471 442-514 (693)
321 PRK14954 DNA polymerase III su 63.1 39 0.00084 43.4 10.6 42 405-446 20-64 (620)
322 PRK10689 transcription-repair 63.1 41 0.0009 46.2 11.5 96 742-838 629-728 (1147)
323 PRK12724 flagellar biosynthesi 63.0 90 0.002 38.3 13.1 88 552-639 294-399 (432)
324 cd01125 repA Hexameric Replica 62.8 48 0.001 36.9 10.3 50 423-472 4-66 (239)
325 PRK08533 flagellar accessory p 62.3 55 0.0012 36.5 10.6 43 420-464 24-66 (230)
326 PRK14959 DNA polymerase III su 62.0 58 0.0013 41.8 11.8 39 408-446 23-64 (624)
327 PRK06835 DNA replication prote 61.9 61 0.0013 38.4 11.3 41 419-461 182-222 (329)
328 cd01124 KaiC KaiC is a circadi 61.7 19 0.00041 37.9 6.5 48 423-472 2-49 (187)
329 PRK10865 protein disaggregatio 61.1 41 0.00088 45.0 10.7 35 410-444 187-223 (857)
330 TIGR03499 FlhF flagellar biosy 60.9 34 0.00074 39.4 8.8 36 423-458 197-232 (282)
331 PRK04195 replication factor C 60.8 78 0.0017 39.4 12.6 25 420-444 39-63 (482)
332 PRK14953 DNA polymerase III su 60.7 63 0.0014 40.3 11.7 42 405-446 20-64 (486)
333 COG0630 VirB11 Type IV secreto 60.5 57 0.0012 38.3 10.7 34 411-444 134-167 (312)
334 smart00492 HELICc3 helicase su 60.2 47 0.001 34.4 8.8 56 789-846 25-83 (141)
335 TIGR00416 sms DNA repair prote 60.0 52 0.0011 40.7 10.7 47 423-471 97-143 (454)
336 cd01122 GP4d_helicase GP4d_hel 60.0 96 0.0021 35.0 12.2 50 420-470 30-79 (271)
337 COG1200 RecG RecG-like helicas 59.9 1.3E+02 0.0028 38.7 14.0 104 744-857 293-401 (677)
338 TIGR02639 ClpA ATP-dependent C 59.7 55 0.0012 42.9 11.4 26 420-445 203-228 (731)
339 TIGR01054 rgy reverse gyrase. 59.5 1.1E+02 0.0023 42.6 14.3 80 742-822 101-187 (1171)
340 PF01695 IstB_IS21: IstB-like 59.4 14 0.0003 39.7 5.0 48 418-471 45-92 (178)
341 PRK14873 primosome assembly pr 58.9 43 0.00094 43.3 10.1 132 744-878 170-308 (665)
342 PRK05563 DNA polymerase III su 58.8 95 0.0021 39.5 12.9 25 423-447 41-65 (559)
343 CHL00176 ftsH cell division pr 58.6 51 0.0011 42.6 10.6 24 420-443 216-239 (638)
344 PRK05986 cob(I)alamin adenolsy 58.5 31 0.00068 37.7 7.5 59 549-610 107-169 (191)
345 PRK14969 DNA polymerase III su 58.2 93 0.002 39.3 12.6 42 405-446 20-64 (527)
346 TIGR01075 uvrD DNA helicase II 57.8 25 0.00054 45.9 7.9 68 400-473 3-73 (715)
347 PRK08939 primosomal protein Dn 57.7 67 0.0015 37.6 10.6 75 409-485 143-227 (306)
348 PRK06893 DNA replication initi 57.6 46 0.001 37.0 9.0 23 423-445 42-64 (229)
349 TIGR01243 CDC48 AAA family ATP 57.6 30 0.00064 45.3 8.5 41 420-465 487-527 (733)
350 TIGR02782 TrbB_P P-type conjug 57.6 22 0.00047 41.5 6.5 35 411-445 123-157 (299)
351 PRK06904 replicative DNA helic 57.5 1.4E+02 0.0031 37.1 14.0 52 420-472 221-272 (472)
352 PRK06067 flagellar accessory p 57.1 78 0.0017 35.1 10.7 49 422-472 27-75 (234)
353 KOG0733 Nuclear AAA ATPase (VC 56.9 72 0.0016 40.5 10.8 47 420-471 545-591 (802)
354 PRK13342 recombination factor 56.8 66 0.0014 39.1 10.8 23 421-443 37-59 (413)
355 PRK07133 DNA polymerase III su 56.5 87 0.0019 41.0 12.1 42 406-447 23-67 (725)
356 TIGR01547 phage_term_2 phage t 56.4 37 0.00079 40.9 8.5 38 558-597 102-142 (396)
357 PRK05896 DNA polymerase III su 56.0 1E+02 0.0022 39.5 12.3 42 406-447 21-65 (605)
358 PRK08181 transposase; Validate 55.7 57 0.0012 37.5 9.4 58 403-462 89-146 (269)
359 PRK03992 proteasome-activating 54.9 27 0.00058 42.2 7.0 26 419-444 164-189 (389)
360 TIGR03420 DnaA_homol_Hda DnaA 54.9 94 0.002 33.8 10.7 62 419-483 37-98 (226)
361 TIGR00365 monothiol glutaredox 54.7 68 0.0015 30.9 8.4 57 762-818 11-73 (97)
362 PRK12377 putative replication 54.6 48 0.0011 37.6 8.5 63 420-484 101-172 (248)
363 KOG0734 AAA+-type ATPase conta 54.5 55 0.0012 40.8 9.2 68 544-616 383-463 (752)
364 KOG2340 Uncharacterized conser 53.7 40 0.00087 41.8 7.9 97 763-860 553-653 (698)
365 PRK12726 flagellar biosynthesi 53.5 1.1E+02 0.0025 37.1 11.6 43 424-468 210-256 (407)
366 PRK13833 conjugal transfer pro 53.5 27 0.00059 41.2 6.5 35 411-445 135-169 (323)
367 PRK06647 DNA polymerase III su 53.3 63 0.0014 41.1 10.1 25 423-447 41-65 (563)
368 PTZ00454 26S protease regulato 53.3 29 0.00064 42.1 6.9 25 419-443 178-202 (398)
369 PF01443 Viral_helicase1: Vira 53.1 28 0.0006 38.1 6.2 40 557-599 62-101 (234)
370 TIGR01242 26Sp45 26S proteasom 53.1 51 0.0011 39.3 8.9 25 420-444 156-180 (364)
371 PRK04132 replication factor C 52.7 69 0.0015 42.6 10.5 50 557-608 630-682 (846)
372 PRK08760 replicative DNA helic 52.6 1.3E+02 0.0028 37.6 12.4 51 421-472 230-280 (476)
373 PRK10867 signal recognition pa 52.6 45 0.00099 40.9 8.4 43 423-466 103-149 (433)
374 cd02037 MRP-like MRP (Multiple 52.5 1.4E+02 0.0029 31.3 11.1 53 556-612 66-118 (169)
375 PRK09165 replicative DNA helic 52.2 1.3E+02 0.0028 37.7 12.5 51 422-472 219-282 (497)
376 COG1066 Sms Predicted ATP-depe 51.0 76 0.0016 38.6 9.5 88 424-573 97-184 (456)
377 PRK14721 flhF flagellar biosyn 50.8 1.2E+02 0.0025 37.3 11.4 55 557-612 269-328 (420)
378 PRK06964 DNA polymerase III su 50.8 1.3E+02 0.0028 35.9 11.6 47 402-448 2-49 (342)
379 PRK14723 flhF flagellar biosyn 50.2 98 0.0021 40.7 11.1 90 542-634 250-358 (767)
380 PF04364 DNA_pol3_chi: DNA pol 49.8 88 0.0019 32.2 8.8 79 748-843 15-97 (137)
381 TIGR00064 ftsY signal recognit 49.7 2.2E+02 0.0047 32.8 12.9 34 424-459 76-109 (272)
382 PRK06921 hypothetical protein; 48.8 1.1E+02 0.0024 35.0 10.4 65 419-484 116-186 (266)
383 TIGR02640 gas_vesic_GvpN gas v 48.7 44 0.00096 38.0 7.1 49 404-457 5-53 (262)
384 COG0470 HolB ATPase involved i 48.6 88 0.0019 35.9 9.7 26 423-448 27-52 (325)
385 PRK08506 replicative DNA helic 48.2 1.6E+02 0.0034 36.7 12.2 48 422-471 194-241 (472)
386 CHL00206 ycf2 Ycf2; Provisiona 48.0 52 0.0011 46.9 8.5 41 420-465 1630-1670(2281)
387 PRK14965 DNA polymerase III su 47.6 1.3E+02 0.0028 38.5 11.6 41 406-446 21-64 (576)
388 PRK13894 conjugal transfer ATP 47.6 38 0.00083 39.9 6.5 34 411-444 139-172 (319)
389 TIGR02760 TraI_TIGR conjugativ 47.2 1.4E+02 0.0029 43.8 12.8 60 401-464 429-488 (1960)
390 cd03028 GRX_PICOT_like Glutare 47.1 77 0.0017 29.9 7.4 46 762-807 7-58 (90)
391 COG1198 PriA Primosomal protei 47.0 56 0.0012 42.6 8.3 162 681-878 196-364 (730)
392 cd00268 DEADc DEAD-box helicas 46.9 1.6E+02 0.0035 31.3 10.8 92 742-838 44-149 (203)
393 TIGR01243 CDC48 AAA family ATP 46.8 66 0.0014 42.2 9.2 24 420-443 212-235 (733)
394 PRK06995 flhF flagellar biosyn 46.5 89 0.0019 39.0 9.6 34 424-457 260-293 (484)
395 PF03237 Terminase_6: Terminas 45.7 99 0.0022 35.7 9.6 35 537-572 78-112 (384)
396 TIGR03346 chaperone_ClpB ATP-d 45.7 2.6E+02 0.0056 37.5 14.4 23 423-445 598-620 (852)
397 TIGR02760 TraI_TIGR conjugativ 45.6 96 0.0021 45.2 11.0 61 400-462 1018-1080(1960)
398 PRK00080 ruvB Holliday junctio 45.4 2.9E+02 0.0063 32.4 13.5 24 421-444 52-75 (328)
399 PRK10865 protein disaggregatio 45.3 3.5E+02 0.0076 36.4 15.5 23 423-445 601-623 (857)
400 PF00437 T2SE: Type II/IV secr 45.3 31 0.00068 39.0 5.2 50 550-605 190-239 (270)
401 PRK08840 replicative DNA helic 44.8 2.6E+02 0.0057 34.8 13.4 50 421-471 218-267 (464)
402 KOG0008 Transcription initiati 44.6 24 0.00053 47.7 4.6 49 1178-1230 709-760 (1563)
403 PRK09401 reverse gyrase; Revie 44.6 2.5E+02 0.0054 39.1 14.2 96 742-838 103-207 (1176)
404 cd01129 PulE-GspE PulE/GspE Th 44.5 44 0.00095 38.2 6.2 41 402-444 64-104 (264)
405 PRK04328 hypothetical protein; 43.7 1.2E+02 0.0026 34.3 9.5 46 423-470 26-71 (249)
406 PRK06305 DNA polymerase III su 43.7 1.6E+02 0.0035 36.4 11.3 41 406-446 22-65 (451)
407 PF13607 Succ_CoA_lig: Succiny 43.6 91 0.002 32.3 7.8 85 764-869 3-89 (138)
408 PRK08006 replicative DNA helic 43.1 2.5E+02 0.0053 35.1 12.8 49 422-471 226-274 (471)
409 KOG1133 Helicase of the DEAD s 43.0 35 0.00076 43.6 5.4 44 401-444 15-58 (821)
410 PF05496 RuvB_N: Holliday junc 42.7 1.1E+02 0.0024 34.6 8.6 17 422-438 52-68 (233)
411 TIGR00614 recQ_fam ATP-depende 42.6 1.5E+02 0.0033 36.6 11.0 95 742-840 34-135 (470)
412 TIGR02655 circ_KaiC circadian 42.6 1.2E+02 0.0026 37.8 10.2 49 422-472 265-313 (484)
413 PRK07004 replicative DNA helic 42.3 1.9E+02 0.004 36.0 11.6 49 421-470 214-262 (460)
414 PRK14970 DNA polymerase III su 41.9 1.8E+02 0.0038 34.6 11.1 41 405-445 21-64 (367)
415 COG0552 FtsY Signal recognitio 41.6 1.7E+02 0.0038 34.7 10.4 57 424-482 143-199 (340)
416 TIGR00678 holB DNA polymerase 41.5 2.4E+02 0.0052 30.0 11.0 25 422-446 16-40 (188)
417 COG4626 Phage terminase-like p 41.4 1.4E+02 0.0029 37.7 10.0 73 398-470 58-139 (546)
418 TIGR01074 rep ATP-dependent DN 40.8 54 0.0012 42.3 7.0 66 402-473 2-70 (664)
419 TIGR01241 FtsH_fam ATP-depende 40.4 74 0.0016 39.7 7.9 24 420-443 88-111 (495)
420 PRK13849 putative crown gall t 40.2 1.2E+02 0.0026 33.9 8.8 39 427-467 9-49 (231)
421 COG4646 DNA methylase [Transcr 39.9 16 0.00035 44.2 1.8 30 586-615 474-503 (637)
422 TIGR03345 VI_ClpV1 type VI sec 39.6 2E+02 0.0042 38.7 11.8 23 423-445 599-621 (852)
423 PF00308 Bac_DnaA: Bacterial d 38.7 3.3E+02 0.0072 30.1 11.9 65 422-486 36-108 (219)
424 cd07977 TFIIE_beta_winged_heli 38.7 93 0.002 28.9 6.2 60 1167-1230 9-73 (75)
425 cd02034 CooC The accessory pro 38.4 3.4E+02 0.0073 27.1 10.7 47 424-474 3-49 (116)
426 TIGR01075 uvrD DNA helicase II 38.4 2.4E+02 0.0052 36.9 12.4 38 764-802 344-381 (715)
427 PF12846 AAA_10: AAA-like doma 38.1 61 0.0013 36.5 6.2 44 421-466 2-45 (304)
428 PF06745 KaiC: KaiC; InterPro 38.1 73 0.0016 35.0 6.6 49 422-472 21-70 (226)
429 COG2256 MGS1 ATPase related to 37.9 93 0.002 37.8 7.6 20 421-440 49-68 (436)
430 cd00046 DEXDc DEAD-like helica 37.7 1.8E+02 0.004 27.7 8.7 95 742-841 8-111 (144)
431 PLN00020 ribulose bisphosphate 37.6 34 0.00075 41.1 4.0 77 388-471 117-194 (413)
432 COG0626 MetC Cystathionine bet 37.3 90 0.002 38.0 7.6 103 745-875 85-188 (396)
433 TIGR02639 ClpA ATP-dependent C 37.3 1.2E+02 0.0026 39.8 9.4 22 423-444 487-508 (731)
434 KOG2543 Origin recognition com 37.0 2.1E+02 0.0045 34.8 10.1 40 559-598 117-161 (438)
435 PRK14701 reverse gyrase; Provi 36.8 1.6E+02 0.0035 42.2 10.8 80 742-822 102-187 (1638)
436 PF00308 Bac_DnaA: Bacterial d 36.7 2.8E+02 0.006 30.7 10.9 33 450-482 34-71 (219)
437 PRK05973 replicative DNA helic 36.1 77 0.0017 35.8 6.4 50 420-471 64-113 (237)
438 CHL00195 ycf46 Ycf46; Provisio 36.1 58 0.0013 40.7 5.9 26 419-444 258-283 (489)
439 PRK13766 Hef nuclease; Provisi 36.1 5E+02 0.011 34.2 14.9 116 742-863 37-163 (773)
440 TIGR01420 pilT_fam pilus retra 35.9 1.4E+02 0.003 35.5 8.8 25 420-444 122-146 (343)
441 PRK10824 glutaredoxin-4; Provi 35.8 1.6E+02 0.0035 29.7 7.8 64 762-826 14-84 (115)
442 PRK07399 DNA polymerase III su 35.7 2.5E+02 0.0055 33.0 10.8 43 406-448 9-54 (314)
443 KOG0780 Signal recognition par 35.7 3.7E+02 0.0081 32.7 11.8 109 742-852 109-234 (483)
444 PRK13341 recombination factor 35.5 92 0.002 40.9 7.7 41 1165-1211 665-705 (725)
445 TIGR00959 ffh signal recogniti 35.1 3.3E+02 0.0071 33.6 11.9 35 423-458 102-136 (428)
446 PRK09183 transposase/IS protei 34.8 1E+02 0.0023 35.1 7.3 51 406-462 92-142 (259)
447 cd01128 rho_factor Transcripti 34.7 1.8E+02 0.0039 33.1 9.1 21 419-439 15-35 (249)
448 PRK06646 DNA polymerase III su 34.2 83 0.0018 33.3 5.8 43 743-785 10-52 (154)
449 PF06564 YhjQ: YhjQ protein; 34.2 95 0.0021 35.3 6.7 37 424-462 6-44 (243)
450 KOG0780 Signal recognition par 34.0 1.4E+02 0.0031 36.1 8.2 43 869-912 294-336 (483)
451 COG3598 RepA RecA-family ATPas 34.0 1.4E+02 0.0029 35.5 7.8 41 418-458 87-135 (402)
452 TIGR03600 phage_DnaB phage rep 33.2 5E+02 0.011 31.6 13.2 47 422-469 196-242 (421)
453 TIGR00665 DnaB replicative DNA 32.9 4.6E+02 0.01 32.0 12.9 47 422-469 197-243 (434)
454 PF02456 Adeno_IVa2: Adenoviru 32.7 91 0.002 36.7 6.2 50 422-471 89-144 (369)
455 cd03418 GRX_GRXb_1_3_like Glut 32.5 1.9E+02 0.0041 25.6 7.3 48 764-811 1-49 (75)
456 PF05970 PIF1: PIF1-like helic 32.5 85 0.0019 37.5 6.4 70 402-473 2-76 (364)
457 COG1110 Reverse gyrase [DNA re 31.8 2.3E+02 0.005 38.3 10.2 82 742-824 105-192 (1187)
458 KOG0738 AAA+-type ATPase [Post 31.8 1.4E+02 0.003 36.2 7.6 46 421-471 246-291 (491)
459 PRK05636 replicative DNA helic 31.7 3.8E+02 0.0083 33.7 12.0 46 423-469 268-313 (505)
460 PRK05728 DNA polymerase III su 31.6 93 0.002 32.3 5.7 43 743-785 10-52 (142)
461 PRK09302 circadian clock prote 31.6 1.2E+02 0.0025 38.1 7.6 47 424-472 277-323 (509)
462 PRK14971 DNA polymerase III su 31.5 5E+02 0.011 33.6 13.3 24 423-446 42-65 (614)
463 TIGR03880 KaiC_arch_3 KaiC dom 31.4 1E+02 0.0022 33.8 6.4 48 423-472 19-66 (224)
464 PRK09376 rho transcription ter 31.2 99 0.0021 37.7 6.5 27 419-445 168-194 (416)
465 PF03354 Terminase_1: Phage Te 31.1 2.5E+02 0.0055 34.9 10.4 56 404-459 1-63 (477)
466 KOG1805 DNA replication helica 31.0 1.5E+02 0.0033 39.5 8.4 53 743-795 694-746 (1100)
467 COG1474 CDC6 Cdc6-related prot 30.9 7.5E+02 0.016 29.8 13.9 47 401-447 20-69 (366)
468 TIGR00708 cobA cob(I)alamin ad 30.7 67 0.0015 34.6 4.5 59 549-610 89-151 (173)
469 PHA00012 I assembly protein 30.7 1.3E+02 0.0027 35.9 7.0 24 425-448 6-29 (361)
470 KOG0298 DEAD box-containing he 30.6 14 0.0003 49.7 -0.7 123 763-891 1222-1344(1394)
471 cd06533 Glyco_transf_WecG_TagA 30.5 3.3E+02 0.0072 29.0 9.8 73 748-821 32-107 (171)
472 PRK05748 replicative DNA helic 30.5 6.5E+02 0.014 31.0 13.7 48 422-470 205-252 (448)
473 PF00270 DEAD: DEAD/DEAH box h 30.3 4.9E+02 0.011 26.4 10.9 93 741-838 21-125 (169)
474 PF13481 AAA_25: AAA domain; P 30.2 1.3E+02 0.0028 31.8 6.8 54 420-473 32-93 (193)
475 smart00707 RPEL Repeat in Dros 30.1 31 0.00068 25.7 1.3 14 220-233 12-25 (26)
476 COG0541 Ffh Signal recognition 29.9 1.3E+02 0.0028 37.0 7.1 79 430-541 110-188 (451)
477 TIGR01425 SRP54_euk signal rec 29.8 8.4E+02 0.018 30.2 14.2 132 424-613 104-242 (429)
478 TIGR03877 thermo_KaiC_1 KaiC d 28.9 1.3E+02 0.0028 33.5 6.7 48 421-470 22-69 (237)
479 PRK13900 type IV secretion sys 28.9 73 0.0016 37.8 4.9 37 408-444 148-184 (332)
480 TIGR00763 lon ATP-dependent pr 28.8 4.9E+02 0.011 34.6 12.9 23 422-444 349-371 (775)
481 PRK13765 ATP-dependent proteas 28.8 1.2E+02 0.0025 39.4 6.9 54 390-444 21-74 (637)
482 COG1702 PhoH Phosphate starvat 28.7 28 0.00061 41.1 1.4 53 402-458 129-181 (348)
483 PRK07276 DNA polymerase III su 28.4 6.6E+02 0.014 29.4 12.4 46 402-448 3-50 (290)
484 PRK06321 replicative DNA helic 28.3 4.9E+02 0.011 32.5 12.1 47 423-470 229-275 (472)
485 TIGR00764 lon_rel lon-related 28.2 1.5E+02 0.0031 38.3 7.7 53 392-445 10-62 (608)
486 PRK10733 hflB ATP-dependent me 28.1 1.9E+02 0.0042 37.4 8.9 24 420-443 185-208 (644)
487 TIGR03881 KaiC_arch_4 KaiC dom 28.1 1.4E+02 0.0031 32.7 6.8 47 422-470 22-68 (229)
488 cd03031 GRX_GRX_like Glutaredo 28.0 1.9E+02 0.0042 30.3 7.3 47 764-810 1-54 (147)
489 PF03808 Glyco_tran_WecB: Glyc 27.5 3.9E+02 0.0085 28.4 9.7 73 748-821 34-109 (172)
490 KOG0740 AAA+-type ATPase [Post 27.3 1.2E+02 0.0025 37.3 6.2 46 421-471 187-232 (428)
491 KOG1532 GTPase XAB1, interacts 27.1 3.1E+02 0.0067 32.0 9.0 58 512-569 64-127 (366)
492 PF02186 TFIIE_beta: TFIIE bet 26.9 1.4E+02 0.0031 27.0 5.2 59 1168-1230 6-64 (65)
493 PRK05564 DNA polymerase III su 26.8 4E+02 0.0086 31.0 10.5 24 423-446 29-52 (313)
494 PHA00350 putative assembly pro 26.8 71 0.0015 38.9 4.3 15 559-573 83-97 (399)
495 PF10593 Z1: Z1 domain; Inter 26.8 9.7E+02 0.021 27.1 13.9 101 769-879 94-198 (239)
496 TIGR00696 wecB_tagA_cpsF bacte 26.2 4.8E+02 0.01 28.2 10.1 72 748-820 34-107 (177)
497 PF05127 Helicase_RecD: Helica 26.2 36 0.00079 36.7 1.6 34 557-595 90-123 (177)
498 TIGR02785 addA_Gpos recombinat 26.0 1.4E+02 0.003 41.7 7.5 58 402-465 2-60 (1232)
499 KOG0735 AAA+-type ATPase [Post 25.9 2.9E+02 0.0063 36.1 9.3 129 417-691 698-841 (952)
500 CHL00095 clpC Clp protease ATP 25.8 1.7E+02 0.0037 39.1 8.0 41 405-445 513-564 (821)
No 1
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.4e-146 Score=1291.44 Aligned_cols=832 Identities=49% Similarity=0.816 Sum_probs=673.8
Q ss_pred ccchhHHHHHHhhhhcCCcccccccCCCCCccccccceeecCCCcchhHhhhhhccccchhhhhHHHHhccCCCcc-cch
Q 044798 159 GIEHDKFIQDLVKEEHRPKRKSKEAQKPGKDRSKQQKTVSVDDDFDFDSALDAASAGFVETKRDELVRKGILTPFH-KLK 237 (1231)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 237 (1231)
...|..++..++|..+ ..+++++++-....++.+++||. |.|+++.-.+|+.+++|||+++|+|.|.+|||+ ++-
T Consensus 4 ~~~~~n~~k~~~k~~~---~~~~~I~~~~dd~~~kl~~~sl~-~~d~~a~~~g~~~~~~e~~~Edl~~~g~~~~~~s~~s 79 (923)
T KOG0387|consen 4 ISVPENLLKQTEKMQS---DDLQEILGIEDDITSKLKEASLR-DKDSSASDFGASMSVLETEKEDLKRTGSLTPFESRLS 79 (923)
T ss_pred ccCccchhhhhhhhcC---ccHHHhhcchhhhhhhhhhhhhh-ccCCCccccccccccchhhHHHHHhcCCcCccccccc
Confidence 4566677777777666 24778999988888999999999 999999999999999999999999999999999 999
Q ss_pred hhhh-hhcCCCCCCCCCCchhhhhccCCCCcchHHHHHHHHHHHhhcCCCcccCCCCCCCCCCCCCCcccccCCCCCCCC
Q 044798 238 GFER-CIQQPGPSNKQNVPDEQEARSNDPFSASVDRALRMMSEAAQARPSTKLLDPESLPKLDGPTRPFQRLKTPFRMPQ 316 (1231)
Q Consensus 238 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 316 (1231)
||++ .+|.|.+|+.++..+++.+. ..+..|.+....+ -.+|...+|+......-.... .+...
T Consensus 80 g~~~~~~~~~~~s~~~~~~e~d~e~---e~~e~ie~~~~e~----------~~~D~~~~~k~~~d~~~ie~d---e~~~~ 143 (923)
T KOG0387|consen 80 GFQKLPSQKPDKSSSRELLEEDDER---ELEEKIEKLISET----------SNLDFGISPKDEKDQEEIESD---EKIDD 143 (923)
T ss_pred cceeccccCCcccccccccccccch---hhHHHHhhhhccc----------cccccccCcccccchhhhhhh---ccccc
Confidence 9999 99999988888877665543 3445555555422 246666666665554211111 00000
Q ss_pred CchhhHHHhhhhhcccCCCCCchHHHHHHHHhhhhhhccccccccccCCchhhhhccCCCCCCCCCCCcccccCCcccCh
Q 044798 317 SEESEVEKKKRSKRKKKRPLPDKKWRKRIAREDTRLEENEDSRDSLDMSSYEEEKQEDDEDSDNNEPPFVTLEGGLKIPE 396 (1231)
Q Consensus 317 ~~~~~~~kkkk~kkkkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~e~~~~d~ed~~~~~~~~~~~~~~~~iP~ 396 (1231)
. -+-..+.-..+.++.++.+........ . +...-+.+..+..+.....++++|.||.
T Consensus 144 ~-----------~~~~~Dd~d~~~~~~r~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~vPg 200 (923)
T KOG0387|consen 144 V-----------EDSAIDDGDEKVYRARLDKWVKYRKLS----------C--ESKGLDEELEDHSEISGKKLEGGFKVPG 200 (923)
T ss_pred c-----------cccccccCchHHHHHHHHHhhhcccch----------h--hhcCcccccccccccccccccccccccH
Confidence 0 011233333444444433322221100 0 0000012223334445566788999999
Q ss_pred hhhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhc-CCCCcEEEEeCCcchHHHHHHHHHHcCC
Q 044798 397 SIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS-NMYKPSIVVCPVTLLRQWKREAEKWYPS 475 (1231)
Q Consensus 397 ~i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s-~~~kpvLIV~P~sLl~QW~~E~~kw~p~ 475 (1231)
.|+..|||||++||+|||++|+++.|||||||||||||||+|+||++++++ ...+|+|||||+++|+||++||++|||+
T Consensus 201 ~I~~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~Tii~qW~~E~~~w~p~ 280 (923)
T KOG0387|consen 201 FIWSKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPATIIHQWMKEFQTWWPP 280 (923)
T ss_pred HHHHHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999999999999999999999999999999998 5679999999999999999999999999
Q ss_pred CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhc
Q 044798 476 FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLD 555 (1231)
Q Consensus 476 lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~ 555 (1231)
++|.++|+++.+... ........|+.++.+......+|+||||+.++...+.+..
T Consensus 281 ~rv~ilh~t~s~~r~-------------------------~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~d~l~~ 335 (923)
T KOG0387|consen 281 FRVFILHGTGSGARY-------------------------DASHSSHKKDKLLIRKVATDGGILITTYDGFRIQGDDLLG 335 (923)
T ss_pred eEEEEEecCCccccc-------------------------ccchhhhhhhhhheeeecccCcEEEEehhhhcccCccccc
Confidence 999999998864321 1223344555556666667789999999999999999999
Q ss_pred CCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCCC
Q 044798 556 VEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYA 635 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~ 635 (1231)
+.|+||||||||+|||++|+++.+|++|++.+||+||||||||||.|||+||+|++||.||+++.|.++|..||..|+|+
T Consensus 336 ~~W~y~ILDEGH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~Ggya 415 (923)
T KOG0387|consen 336 ILWDYVILDEGHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYA 415 (923)
T ss_pred ccccEEEecCcccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhh-cCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchhHH
Q 044798 636 NASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNA-QLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYG 714 (1231)
Q Consensus 636 ~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~-dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~ 714 (1231)
|+++.++.++|+|++.|+.+|+||||||+|+||.. .||.|.++|+||.||+.|+.+|+.|+.+.++..++++..+.|++
T Consensus 416 NAs~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~G 495 (923)
T KOG0387|consen 416 NASPRQVQTAYKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSG 495 (923)
T ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceec
Confidence 99999999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCChhhhhhh--hhcCCCCC-CCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHH-HcCCcEE
Q 044798 715 IDVMRKICNHPDLLERE--QSCQIPDY-GNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLI-ASGYEYR 790 (1231)
Q Consensus 715 i~~LRkicnHPdLl~~~--~~~~~~d~-~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~-~~Gi~~~ 790 (1231)
|..||+|||||+|+.+. .....+++ ++++.|+||++|..+|..|+.+|+|||+|+|+++|||+|+.+|. ..||.|+
T Consensus 496 i~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysyl 575 (923)
T KOG0387|consen 496 IDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYL 575 (923)
T ss_pred hHHHHhhcCCcccccCcccccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEE
Confidence 99999999999999887 66677888 99999999999999999999999999999999999999999999 6899999
Q ss_pred EEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEE
Q 044798 791 RMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLI 870 (1231)
Q Consensus 791 rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLi 870 (1231)
||||+|+...|+.+|++||++..++|||+||+|||+|||||+|||||||||+|||+++.||.+|+|||||+|+|.|||||
T Consensus 576 RmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~ 655 (923)
T KOG0387|consen 576 RMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLM 655 (923)
T ss_pred EecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCHHHHHHHHHHHHHHHHHHHhcCcchhcccCHhHHHHhhccCCCCC-CCCcchhhHhhhhcccccccCcccchhhHH
Q 044798 871 TRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDDGN-GGSTETSNIFSQLSEDVNVVGDQKDKEDKQ 949 (1231)
Q Consensus 871 t~gTIEEkIy~rQ~~K~~L~n~vl~d~~~~r~f~~~dl~dLF~l~~~~~-~~~~et~~~f~~~~~~~~~~~~~~~~~~~~ 949 (1231)
+.|||||+||++|++|++|+|+++.+|+++|||...+|+|||+|.+.+. +..+|++++|....+.++.......+....
T Consensus 656 t~gTIEEkiY~rQI~Kq~Ltn~il~~p~q~RfF~~~dl~dLFsl~~~G~~~~~te~~~~~~~~~~~~~lk~~~~~~~~~~ 735 (923)
T KOG0387|consen 656 TAGTIEEKIYHRQIFKQFLTNRILKNPEQRRFFKGNDLHDLFSLKDFGDDGESTETSSKEVHRNEKVNLKRNSSIDFEEK 735 (923)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHhcCHHHhhhcccccHHHHhCCCCCCcCcchhhhhhhhhhhhHHHHHhhcccccchhh
Confidence 9999999999999999999999999999999999999999999988643 678999999988754444321111110000
Q ss_pred HHHhhhhcCCCCcccccccccccccccccCcccccCC-CCCCchhHHHHHHhhhhcCcccccchhhhhccCchhhHHHHH
Q 044798 950 KHKKAASANADDAVGDKENNLEIGSSRRKGKEKVDNI-GDEVDEETNILKSLFDANGIHSAMNHDAIMNAHDEEKMRLEE 1028 (1231)
Q Consensus 950 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~s~~~hd~i~~~~~~~~~~~~~ 1028 (1231)
. ....-. ..+ +..++...+....+.. .......+-||.++++. +-|+.. ......+++.
T Consensus 736 ~--~l~~l~-~~~--------~~~~~~~~~~~~~e~~~~~~~e~~~~ilg~~~~~------vv~~~~---~~~~~~~~~~ 795 (923)
T KOG0387|consen 736 E--DLLALS-KHS--------ELSSSVSNGSSEEEVEEAKDREMIKPILGSLSDS------VVNNHR---NEEEKNIIET 795 (923)
T ss_pred h--hhhhhc-ccc--------ccccccCchHHHHHHHHHhhhhhhhhhhccchhh------hHHhhh---hhhhhccccc
Confidence 0 000000 000 0000000111110000 00111223355555432 112111 1234668899
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhcCCCCCCccCCCCCCCC---CCCcccccCCCc
Q 044798 1029 QASQVAQRAAEALRQSRML-RSRDDISVPTWTGKSGTAG---APSSVRKKFGST 1078 (1231)
Q Consensus 1029 ea~~va~~a~~~l~~s~~~-~~~~~~~~ptwtg~~g~ag---~~~~~~~~~~~~ 1078 (1231)
++..++++|..+++.++.. .+....++|||||.+|.|| +|...+.+++.+
T Consensus 796 ~~~~~~~~~n~~~s~dr~~~~~~~~s~~~~~t~~~g~~g~~~r~~~~k~~~~~~ 849 (923)
T KOG0387|consen 796 EASTSVKRANDALSDDRKLSKRKGCSGEETWTDSSGEAGKVERPSDYKMKIEST 849 (923)
T ss_pred cccchhhhhccccccchhhhhhcccccCcchhhccccCCCcccCchhcchhHHH
Confidence 9999999999999999976 4666788999999999999 787666665544
No 2
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=2.9e-95 Score=852.19 Aligned_cols=474 Identities=36% Similarity=0.622 Sum_probs=416.9
Q ss_pred cChhhh-hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhh-cCCCCcEEEEeCCcchHHHHHHHHH
Q 044798 394 IPESIF-NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF-SNMYKPSIVVCPVTLLRQWKREAEK 471 (1231)
Q Consensus 394 iP~~i~-~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~-s~~~kpvLIV~P~sLl~QW~~E~~k 471 (1231)
-|..+. ..|+|||.+||+||..++..+.+||||||||||||+|+|+|+.++.+ .+..+|.||+||.+++.||.+||.+
T Consensus 159 sP~~v~~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~StL~NW~~Ef~r 238 (971)
T KOG0385|consen 159 SPSYVKGGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKSTLDNWMNEFKR 238 (971)
T ss_pred CchhhcCCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhhHHHHHHHHHH
Confidence 366665 68999999999999999999999999999999999999999999987 6678999999999999999999999
Q ss_pred HcCCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHh
Q 044798 472 WYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGE 551 (1231)
Q Consensus 472 w~p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~ 551 (1231)
|+|++++++|+|....+....+ .-.....++|+||||+.+.+..+
T Consensus 239 f~P~l~~~~~~Gdk~eR~~~~r-----------------------------------~~~~~~~fdV~iTsYEi~i~dk~ 283 (971)
T KOG0385|consen 239 FTPSLNVVVYHGDKEERAALRR-----------------------------------DIMLPGRFDVCITSYEIAIKDKS 283 (971)
T ss_pred hCCCcceEEEeCCHHHHHHHHH-----------------------------------HhhccCCCceEeehHHHHHhhHH
Confidence 9999999999987643322111 11223478999999999999999
Q ss_pred hhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhcccccc
Q 044798 552 KLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITV 631 (1231)
Q Consensus 552 ~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~ 631 (1231)
.|..+.|.|+|+||||+|||.+|..++.++.+.+.+|++|||||+||||.|||+|++||.|..|++...|..+|...+..
T Consensus 284 ~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~ 363 (971)
T KOG0385|consen 284 FLKKFNWRYLVIDEAHRIKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCE 363 (971)
T ss_pred HHhcCCceEEEechhhhhcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999875222
Q ss_pred CCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhh----c
Q 044798 632 GGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD----G 707 (1231)
Q Consensus 632 g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~----~ 707 (1231)
+ .......|+.++.||+|||+|.+|...||||.+.++||.|++.|++.|..++...-. .+.. .
T Consensus 364 ~------------~~e~v~~Lh~vL~pFlLRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~-~~n~~~~~~ 430 (971)
T KOG0385|consen 364 G------------DQELVSRLHKVLRPFLLRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLD-ALNGEGKGE 430 (971)
T ss_pred c------------CHHHHHHHHhhhhHHHHHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcch-hhcccccch
Confidence 2 223567899999999999999999999999999999999999999999998865321 1111 1
Q ss_pred CcchhHHHHHHHHHhCChhhhhhhhhcCCCCCC----CCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHH
Q 044798 708 SRNSLYGIDVMRKICNHPDLLEREQSCQIPDYG----NPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLI 783 (1231)
Q Consensus 708 ~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~----~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~ 783 (1231)
.......+++||+|||||+|+..... .+.|. ....||||.+|..||..++++|||||||||++.|||||+.++.
T Consensus 431 k~kL~NI~mQLRKccnHPYLF~g~eP--g~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~ 508 (971)
T KOG0385|consen 431 KTKLQNIMMQLRKCCNHPYLFDGAEP--GPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCM 508 (971)
T ss_pred hhHHHHHHHHHHHhcCCccccCCCCC--CCCCCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHH
Confidence 12334456789999999999987322 23332 3467999999999999999999999999999999999999999
Q ss_pred HcCCcEEEEeCCCCHHHHHHHHHHHhCCC-CceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcc
Q 044798 784 ASGYEYRRMDGLTPVKQRMALIDEYNNSS-DVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQ 862 (1231)
Q Consensus 784 ~~Gi~~~rIdGsts~~eRq~iId~Fn~d~-~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk 862 (1231)
.+||.|+||||+|+.++|...|+.||..+ ..+|||+||+|||+||||++|++||+||.+|||..+.||++|||||||++
T Consensus 509 ~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K 588 (971)
T KOG0385|consen 509 LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKK 588 (971)
T ss_pred hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcC
Confidence 99999999999999999999999999864 69999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCcchh----cccCHhHHHHhhccCCC
Q 044798 863 DVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQR----RFFKARNMKDLFTLNDD 917 (1231)
Q Consensus 863 ~V~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~d~~~~----r~f~~~dl~dLF~l~~~ 917 (1231)
+|.||||++++||||+|+.|...|..|.+.|+.+.... ......+|.+|..++.+
T Consensus 589 ~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g~l~~~~~~~~~k~~~l~~~r~g~~ 647 (971)
T KOG0385|consen 589 PVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQGRLEEQKSNGLGKDELLNLLRFGAD 647 (971)
T ss_pred ceEEEEEeccchHHHHHHHHHHHHhchhhhhhccCchhhhhccccchHHHHHHHHcCch
Confidence 99999999999999999999999999999999876322 22456777777766644
No 3
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=6.7e-92 Score=850.57 Aligned_cols=491 Identities=36% Similarity=0.636 Sum_probs=439.8
Q ss_pred CCcccChhhhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcC-------CCCcEEEEeCCcch
Q 044798 390 GGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN-------MYKPSIVVCPVTLL 462 (1231)
Q Consensus 390 ~~~~iP~~i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~-------~~kpvLIV~P~sLl 462 (1231)
..++||..|...|+.||.+||+||..+......|||||+||||||+|+|++++.-++.. ...|.|||||.+|.
T Consensus 964 ~~y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsTLt 1043 (1549)
T KOG0392|consen 964 PEYKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPSTLT 1043 (1549)
T ss_pred CccccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCchhh
Confidence 45789999999999999999999999999999999999999999999999999887765 45689999999999
Q ss_pred HHHHHHHHHHcCCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeC
Q 044798 463 RQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITT 542 (1231)
Q Consensus 463 ~QW~~E~~kw~p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItT 542 (1231)
.+|+.|+.+|+|-++|..|.|....+..-+ .-.+.++|+||+
T Consensus 1044 GHW~~E~~kf~pfL~v~~yvg~p~~r~~lR--------------------------------------~q~~~~~iiVtS 1085 (1549)
T KOG0392|consen 1044 GHWKSEVKKFFPFLKVLQYVGPPAERRELR--------------------------------------DQYKNANIIVTS 1085 (1549)
T ss_pred hHHHHHHHHhcchhhhhhhcCChHHHHHHH--------------------------------------hhccccceEEee
Confidence 999999999999999988887654321111 112345899999
Q ss_pred HHHHHHHHhhhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHH
Q 044798 543 YEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFE 622 (1231)
Q Consensus 543 Ye~Lr~~~~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~ 622 (1231)
|+.+|++...|....|.|+||||||-|||..++.++++++|++.||++|||||||||+.||||||+||+||.+|+...|.
T Consensus 1086 YDv~RnD~d~l~~~~wNYcVLDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFq 1165 (1549)
T KOG0392|consen 1086 YDVVRNDVDYLIKIDWNYCVLDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQ 1165 (1549)
T ss_pred HHHHHHHHHHHHhcccceEEecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHH-
Q 044798 623 AEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEV- 701 (1231)
Q Consensus 623 ~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~- 701 (1231)
.+|..||........+..+...+..++..|++.+.|||+||+|.||..+||||+.+-.||+|++.|+++|+.|..+...
T Consensus 1166 srf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~ 1245 (1549)
T KOG0392|consen 1166 SRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQC 1245 (1549)
T ss_pred HHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999876211
Q ss_pred -------HHHhhc--CcchhHHHHHHHHHhCChhhhhhhhh-----------cCCCCCCCCCcchHHHHHHHHHHHHHh-
Q 044798 702 -------EQILDG--SRNSLYGIDVMRKICNHPDLLEREQS-----------CQIPDYGNPERSEKMKVVAQVLKVWKD- 760 (1231)
Q Consensus 702 -------~~il~~--~~~~l~~i~~LRkicnHPdLl~~~~~-----------~~~~d~~~~~~S~Kl~~L~eLLk~~~~- 760 (1231)
.....+ ....|..+..||++||||.|+..... .......+...|+|+.+|.+||..|.-
T Consensus 1246 ~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig 1325 (1549)
T KOG0392|consen 1246 VSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIG 1325 (1549)
T ss_pred cccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCC
Confidence 111112 45678889999999999999754210 111234456889999999999998831
Q ss_pred -------------cCCeEEEEeccHHHHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecccc
Q 044798 761 -------------QGHRVLLFAQTQQMLDILESFLIAS---GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVG 824 (1231)
Q Consensus 761 -------------~g~KVLVFSQ~~~~LdiLe~~L~~~---Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvG 824 (1231)
.+||+|||||++.|+|++++-|-+. .+.|+|+||++++.+|++++.+||+|+.+.|+|+||.||
T Consensus 1326 ~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVG 1405 (1549)
T KOG0392|consen 1326 NNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVG 1405 (1549)
T ss_pred CCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeecc
Confidence 3699999999999999999988765 567999999999999999999999999999999999999
Q ss_pred ccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCcc-hhccc
Q 044798 825 GLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFF 903 (1231)
Q Consensus 825 g~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~d~~-~~r~f 903 (1231)
|+|||||+|++|||++-+|||..+.||++|||||||+|.|.|||||++||+||||+.+|.||.+.+|.|++.+. ....+
T Consensus 1406 GLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl~tM 1485 (1549)
T KOG0392|consen 1406 GLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASLETM 1485 (1549)
T ss_pred ccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998554 45778
Q ss_pred CHhHHHHhhc-cCCCC
Q 044798 904 KARNMKDLFT-LNDDG 918 (1231)
Q Consensus 904 ~~~dl~dLF~-l~~~~ 918 (1231)
..++|.|||+ ++.|+
T Consensus 1486 ~TdqLLdlF~~~~gd~ 1501 (1549)
T KOG0392|consen 1486 DTDQLLDLFTVLDGDG 1501 (1549)
T ss_pred CHHHHHHHhcccCCch
Confidence 8999999999 55443
No 4
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=2.1e-89 Score=807.03 Aligned_cols=496 Identities=31% Similarity=0.563 Sum_probs=427.2
Q ss_pred cCCcccChhhhhhchHHHHHHHHHHHHHHc---------CCCcEEEEeCCCchHHHHHHHHHHHHhhc--CCCCcEEEEe
Q 044798 389 EGGLKIPESIFNNLFDYQKVGVQWLWELHC---------QRAGGIIGDEMGLGKTIQVLSFLGALHFS--NMYKPSIVVC 457 (1231)
Q Consensus 389 ~~~~~iP~~i~~~L~pyQkegV~wL~el~~---------~~~GgILADEMGLGKTIqaIA~L~~L~~s--~~~kpvLIV~ 457 (1231)
...+.||..|...|+|||..||+|||.+.+ .+.||||||.||||||+|+|+|++.++.. -..+++||||
T Consensus 656 e~~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~ 735 (1567)
T KOG1015|consen 656 EPLVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVC 735 (1567)
T ss_pred cchhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEc
Confidence 445788999999999999999999999754 36799999999999999999999987654 3467999999
Q ss_pred CCcchHHHHHHHHHHcCCCeEE----EEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhc
Q 044798 458 PVTLLRQWKREAEKWYPSFHVE----LLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLR 533 (1231)
Q Consensus 458 P~sLl~QW~~E~~kw~p~lrV~----il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~ 533 (1231)
|.+++.||.+||.+|.+++.+. |+.-. ..+.......++.+ +.
T Consensus 736 PlNt~~NW~~EFekWm~~~e~~~~leV~eL~--------------------------------~vkr~e~R~~~L~~-W~ 782 (1567)
T KOG1015|consen 736 PLNTALNWMNEFEKWMEGLEDDEKLEVSELA--------------------------------TVKRPEERSYMLQR-WQ 782 (1567)
T ss_pred chHHHHHHHHHHHHhcccccccccceeehhh--------------------------------hccChHHHHHHHHH-HH
Confidence 9999999999999999863221 11100 00111111113333 34
Q ss_pred CCCCEEEeCHHHHHHHH---------------hhhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccC
Q 044798 534 SESGLLITTYEQLRLLG---------------EKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQN 598 (1231)
Q Consensus 534 ~~~~VvItTYe~Lr~~~---------------~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqN 598 (1231)
...+|+|+.|.++|.+. ..|....+|+|||||||.|||..+.+++|+.++++.+||+|||||+||
T Consensus 783 ~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQN 862 (1567)
T KOG1015|consen 783 EDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQN 862 (1567)
T ss_pred hcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhh
Confidence 55699999999998653 236677899999999999999999999999999999999999999999
Q ss_pred ChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEE
Q 044798 599 KLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEH 678 (1231)
Q Consensus 599 nl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~ 678 (1231)
||.|+|+|++||.|+.||+.++|.++|.+||++|++.+++..++..+.++.+.|.+++..|+-|+....+...||||+++
T Consensus 863 NLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~ey 942 (1567)
T KOG1015|consen 863 NLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEY 942 (1567)
T ss_pred hhHHHHHHHHhcccccccCcHHHHHhhcCccccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCHHHHHHHHHHHhhHH-HHHHhh----cCcchhHHHHHHHHHhCChhhhhhhh-------------------hc
Q 044798 679 VLFCSLTEEQRAVYRAFLASSE-VEQILD----GSRNSLYGIDVMRKICNHPDLLEREQ-------------------SC 734 (1231)
Q Consensus 679 vv~~~Lt~~Qr~lY~~~l~s~~-~~~il~----~~~~~l~~i~~LRkicnHPdLl~~~~-------------------~~ 734 (1231)
|+++.||+.|..+|..||.... ...-.. ...+.|..+..|++|++||..+.... .|
T Consensus 943 Vi~vrltelQ~~LYq~yL~h~~~~G~d~eg~~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~ 1022 (1567)
T KOG1015|consen 943 VIAVRLTELQCKLYQYYLDHLTGVGNDSEGGRGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADD 1022 (1567)
T ss_pred EEEEeccHHHHHHHHHHHhhccccCCccccccchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCC
Confidence 9999999999999999997311 111111 23356778899999999998753100 00
Q ss_pred C------------------------C------------------------------------C-----------------
Q 044798 735 Q------------------------I------------------------------------P----------------- 737 (1231)
Q Consensus 735 ~------------------------~------------------------------------~----------------- 737 (1231)
. . +
T Consensus 1023 sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~ 1102 (1567)
T KOG1015|consen 1023 SDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNP 1102 (1567)
T ss_pred CccccccccccchhhcccccccccccccccccccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCC
Confidence 0 0 0
Q ss_pred ---------------CCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHH------------------
Q 044798 738 ---------------DYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIA------------------ 784 (1231)
Q Consensus 738 ---------------d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~------------------ 784 (1231)
++.....|+||..|++||+.+.+-|+|+|||||+...||+|+.||..
T Consensus 1103 ~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~e 1182 (1567)
T KOG1015|consen 1103 SDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGE 1182 (1567)
T ss_pred CCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccc
Confidence 01112469999999999999999999999999999999999999963
Q ss_pred ----cCCcEEEEeCCCCHHHHHHHHHHHhCCCC--ceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhh
Q 044798 785 ----SGYEYRRMDGLTPVKQRMALIDEYNNSSD--VFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858 (1231)
Q Consensus 785 ----~Gi~~~rIdGsts~~eRq~iId~Fn~d~~--i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~Ri 858 (1231)
.|..|.+|||+++..+|+++.++||+..+ .++|||||++|++|+||.+||||||||..|||+.+.|+|.|+||+
T Consensus 1183 GkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRf 1262 (1567)
T KOG1015|consen 1183 GKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRF 1262 (1567)
T ss_pred cceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhh
Confidence 26789999999999999999999998654 578999999999999999999999999999999999999999999
Q ss_pred CCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCcchhcccCHhHHHHhhccCCC
Q 044798 859 GQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLNDD 917 (1231)
Q Consensus 859 GQkk~V~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~d~~~~r~f~~~dl~dLF~l~~~ 917 (1231)
||++||||||||+.||+||+||.||..|+.++.+|++.++..|+|+++||.+||++.++
T Consensus 1263 GQtKPvyiYRfiAqGTmEeKIYkRQVTKqsls~RVVDeqQv~Rhy~~neLteLy~fep~ 1321 (1567)
T KOG1015|consen 1263 GQTKPVYIYRFIAQGTMEEKIYKRQVTKQSLSFRVVDEQQVERHYTMNELTELYTFEPD 1321 (1567)
T ss_pred cCcCceeehhhhhcccHHHHHHHHHHhHhhhhhhhhhHHHHHHHhhHhhhHHHhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999875
No 5
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=7.3e-88 Score=803.86 Aligned_cols=485 Identities=36% Similarity=0.643 Sum_probs=432.7
Q ss_pred cccChhhhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhc-CCCCcEEEEeCCcchHHHHHHHH
Q 044798 392 LKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS-NMYKPSIVVCPVTLLRQWKREAE 470 (1231)
Q Consensus 392 ~~iP~~i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s-~~~kpvLIV~P~sLl~QW~~E~~ 470 (1231)
+.+|..|+..|+.||+.|+.||..+|.++.+||||||||||||||+|+|+++|.+. +.+||.|||||.++|-+|.-||+
T Consensus 606 tpvPsLLrGqLReYQkiGLdWLatLYeknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnWEMElK 685 (1958)
T KOG0391|consen 606 TPVPSLLRGQLREYQKIGLDWLATLYEKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNWEMELK 685 (1958)
T ss_pred cCchHHHHHHHHHHHHhhHHHHHHHHHhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhhhHHHh
Confidence 56889999999999999999999999999999999999999999999999999774 57899999999999999999999
Q ss_pred HHcCCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHH
Q 044798 471 KWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLG 550 (1231)
Q Consensus 471 kw~p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~ 550 (1231)
+|||+++|..|+|+......+++.+ . .-+.+||+||+|..+....
T Consensus 686 RwcPglKILTYyGs~kErkeKRqgW-----------------------------~------kPnaFHVCItSYklv~qd~ 730 (1958)
T KOG0391|consen 686 RWCPGLKILTYYGSHKERKEKRQGW-----------------------------A------KPNAFHVCITSYKLVFQDL 730 (1958)
T ss_pred hhCCcceEeeecCCHHHHHHHhhcc-----------------------------c------CCCeeEEeehhhHHHHhHH
Confidence 9999999999999887655444321 0 1255799999999999999
Q ss_pred hhhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccc
Q 044798 551 EKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIT 630 (1231)
Q Consensus 551 ~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~ 630 (1231)
..|....|.|+||||||+|||..|..++++..+++.+||+|||||+||++.|||||++||.|..|.+...|+.||.+|+.
T Consensus 731 ~AFkrkrWqyLvLDEaqnIKnfksqrWQAllnfnsqrRLLLtgTPLqNslmELWSLmhFLmP~~f~shd~fk~wfsnPlt 810 (1958)
T KOG0391|consen 731 TAFKRKRWQYLVLDEAQNIKNFKSQRWQALLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPQTFASHDIFKPWFSNPLT 810 (1958)
T ss_pred HHHHhhccceeehhhhhhhcchhHHHHHHHhccchhheeeecCCchhhHHHHHHHHHHHhhchhhhhhhhHHHHhcCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred cCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhc--C
Q 044798 631 VGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDG--S 708 (1231)
Q Consensus 631 ~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~--~ 708 (1231)
.--.. ......+....|++.+.||+|||+|.||.++||.|.|||++|.|+..|+.+|+.|+.....+..+.. .
T Consensus 811 gmiEg-----sqeyn~klV~RLHkVlrPfiLRRlK~dVEKQlpkKyEHvv~CrLSkRQR~LYDDfmsq~~TKetLkSGhf 885 (1958)
T KOG0391|consen 811 GMIEG-----SQEYNHKLVIRLHKVLRPFILRRLKRDVEKQLPKKYEHVVKCRLSKRQRALYDDFMSQPGTKETLKSGHF 885 (1958)
T ss_pred hhccc-----chhhchHHHHHHHHHhHHHHHHHHHHHHHHhcchhhhhheeeehhhhHHHHHHHHhhccchhhHhhcCch
Confidence 32211 1122356678899999999999999999999999999999999999999999999987766655543 3
Q ss_pred cchhHHHHHHHHHhCChhhhhhhh--------------------------------------------------------
Q 044798 709 RNSLYGIDVMRKICNHPDLLEREQ-------------------------------------------------------- 732 (1231)
Q Consensus 709 ~~~l~~i~~LRkicnHPdLl~~~~-------------------------------------------------------- 732 (1231)
.+++..+++||++||||.|++...
T Consensus 886 msVlnilmqLrKvCNHPnLfEpRpv~ssfV~e~l~~s~as~~~r~l~el~~k~p~~~~ls~~p~~~~vp~v~pas~~~sA 965 (1958)
T KOG0391|consen 886 MSVLNILMQLRKVCNHPNLFEPRPVGSSFVAEPLEYSSASKITRHLAELLSKKPIPRKLSEEPSTSAVPAVRPASAKLSA 965 (1958)
T ss_pred hHHHHHHHHHHHHcCCCCcCCCCCCCcccccCceeccccccchhhhhhhccCCCCchhhhcCCCcccccccchhhhhhcc
Confidence 466778899999999998863000
Q ss_pred --------------------------------------------------------------------------------
Q 044798 733 -------------------------------------------------------------------------------- 732 (1231)
Q Consensus 733 -------------------------------------------------------------------------------- 732 (1231)
T Consensus 966 spl~s~l~~ls~~~rPp~pt~~g~~F~~~aa~atsphteea~~~~v~r~~~~~~va~~q~r~lt~p~~~veq~n~~k~~~ 1045 (1958)
T KOG0391|consen 966 SPLASALPQLSLRGRPPIPTFAGAPFQTSAASATSPHTEEASASSVARLPSGEVVAIAQLRSLTGPQSRVEQPNTPKTLQ 1045 (1958)
T ss_pred cccccccccccCCCCCCCccccccccccchhcccCCccccccccchhcccchheeeccccccccCcHhHhhcCCCceeee
Confidence
Q ss_pred ---hcCC-----------------------C-------------------------------------------------
Q 044798 733 ---SCQI-----------------------P------------------------------------------------- 737 (1231)
Q Consensus 733 ---~~~~-----------------------~------------------------------------------------- 737 (1231)
.|.. +
T Consensus 1046 htt~~~p~~~~~svl~~~sv~t~pl~~ap~p~~~~l~~a~gsr~pv~~ddpa~ltp~sg~pkl~gtat~~~g~~pr~~~~ 1125 (1958)
T KOG0391|consen 1046 HTTAGQPLQLQGSVLQIVSVPTQPLLRAPGPVVMALHGALGSRPPVGGDDPAPLTPQSGVPKLVGTATLAVGEPPRAIGG 1125 (1958)
T ss_pred eecccCccccccceeeeccccccccccCCCCcceecchhhccCCCCCCCCccccccccCCCCCcchhhhccCCCcccccc
Confidence 0000 0
Q ss_pred -----------------------CCC------------------------------------------------------
Q 044798 738 -----------------------DYG------------------------------------------------------ 740 (1231)
Q Consensus 738 -----------------------d~~------------------------------------------------------ 740 (1231)
.|+
T Consensus 1126 klee~Rkrql~erl~ri~~~~APvyg~e~l~~c~lp~e~i~p~~~ea~~e~~l~~~r~le~l~~iIdrfafv~ppvva~p 1205 (1958)
T KOG0391|consen 1126 KLEEERKRQLKERLDRIYLVNAPVYGRELLRICALPSEGIVPWRSEAPSELMLTLCRCLESLQDIIDRFAFVIPPVVAAP 1205 (1958)
T ss_pred chhhHHHHHHHHHHHHHhhccCcccchhhhhhhccchhhhccccccCchhhhhhHHHHHHHHHHHHHHheeecccccCCC
Confidence 000
Q ss_pred -------------------------------------------------CCCcchHHHHHHHHHHHHHhcCCeEEEEecc
Q 044798 741 -------------------------------------------------NPERSEKMKVVAQVLKVWKDQGHRVLLFAQT 771 (1231)
Q Consensus 741 -------------------------------------------------~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~ 771 (1231)
..-.+||++.|.-||+.++..||+||||+|.
T Consensus 1206 pslra~~ppp~~~~r~r~~~~qlrsel~p~~~~~q~~~~r~lqFPelrLiqyDcGKLQtLAiLLqQLk~eghRvLIfTQM 1285 (1958)
T KOG0391|consen 1206 PSLRAPRPPPLYSHRMRILRQQLRSELAPYFQQRQTTAPRLLQFPELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQM 1285 (1958)
T ss_pred hhhcCCCCCcccchHHHHHHHHHHHHhccccchhhccchhhhcCcchheeecccchHHHHHHHHHHHHhcCceEEehhHH
Confidence 0013789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHH
Q 044798 772 QQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQA 851 (1231)
Q Consensus 772 ~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QA 851 (1231)
+.|||+|+.||..+||-|+||||++..++|+.++++||.|..|+|||+||+.||+|||||+|++|||||.+|||..|.||
T Consensus 1286 tkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQA 1365 (1958)
T KOG0391|consen 1286 TKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQA 1365 (1958)
T ss_pred HHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHhhCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCcc-hhcccCHhHHHHhhccCC
Q 044798 852 RERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFFKARNMKDLFTLND 916 (1231)
Q Consensus 852 igRa~RiGQkk~V~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~d~~-~~r~f~~~dl~dLF~l~~ 916 (1231)
.+|+|||||+++|+|||||.+.||||+|+++...|+.|-+-++.+.. ...||+..++.|||.+..
T Consensus 1366 QDrChRIGqtRDVHIYRLISe~TIEeniLkkanqKr~L~evaiqggdfTt~ff~q~ti~dLFd~~~ 1431 (1958)
T KOG0391|consen 1366 QDRCHRIGQTRDVHIYRLISERTIEENILKKANQKRMLDEVAIQGGDFTTAFFKQRTIRDLFDVYL 1431 (1958)
T ss_pred HHHHHhhcCccceEEEEeeccchHHHHHHhhhhHHHHHHHHhhccCCccHHHHhhhhHHHHhcCCC
Confidence 99999999999999999999999999999999999999999887655 578999999999999855
No 6
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=4e-87 Score=786.88 Aligned_cols=461 Identities=37% Similarity=0.572 Sum_probs=393.5
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHHcCCCeEEE
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVEL 480 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw~p~lrV~i 480 (1231)
+|.|||+.||+||.-+|.++-.||||||||||||+|+|||+++|...+..+|.|||||.+++.||.+||++|||.++|..
T Consensus 399 ~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsSTleNWlrEf~kwCPsl~Ve~ 478 (941)
T KOG0389|consen 399 QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSSTLENWLREFAKWCPSLKVEP 478 (941)
T ss_pred cccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchhHHHHHHHHHHhCCceEEEe
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHH---HHHhhhhcCC
Q 044798 481 LHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLR---LLGEKLLDVE 557 (1231)
Q Consensus 481 l~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr---~~~~~L~~~~ 557 (1231)
|||+...+...+.+ +..- ...++|++|||..+. .+...|....
T Consensus 479 YyGSq~ER~~lR~~---------------------------------i~~~-~~~ydVllTTY~la~~~kdDRsflk~~~ 524 (941)
T KOG0389|consen 479 YYGSQDERRELRER---------------------------------IKKN-KDDYDVLLTTYNLAASSKDDRSFLKNQK 524 (941)
T ss_pred ccCcHHHHHHHHHH---------------------------------Hhcc-CCCccEEEEEeecccCChHHHHHHHhcc
Confidence 99998654333221 1111 136799999999884 4556788999
Q ss_pred ccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCC-hhHHHHhhccccccCCCCC
Q 044798 558 WGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGV-LPVFEAEFAVPITVGGYAN 636 (1231)
Q Consensus 558 wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~-~~~F~~~f~~pI~~g~~~~ 636 (1231)
|+|||.||||.+||..|.+++.++.+++.+||+|||||+||||.|||||+.|+.|..|.. ...+..-|..--+ .+
T Consensus 525 ~n~viyDEgHmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~----~d 600 (941)
T KOG0389|consen 525 FNYVIYDEGHMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKT----SD 600 (941)
T ss_pred ccEEEecchhhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCC----cc
Confidence 999999999999999999999999999999999999999999999999999999998763 3334333332111 12
Q ss_pred CChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHh---hcCcchhH
Q 044798 637 ASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL---DGSRNSLY 713 (1231)
Q Consensus 637 as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il---~~~~~~l~ 713 (1231)
....+......+..+-..++.||+|||.|.+|..+||||..+|.+|.|+..|+.+|..++.......-. +.....-.
T Consensus 601 ~d~e~~~l~qerIsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~ 680 (941)
T KOG0389|consen 601 GDIENALLSQERISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGN 680 (941)
T ss_pred chhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccch
Confidence 222333344456777888999999999999999999999999999999999999999987654221111 11111233
Q ss_pred HHHHHHHHhCChhhhhhhhh-----------------------------------------cCCC---C----CCCCCcc
Q 044798 714 GIDVMRKICNHPDLLEREQS-----------------------------------------CQIP---D----YGNPERS 745 (1231)
Q Consensus 714 ~i~~LRkicnHPdLl~~~~~-----------------------------------------~~~~---d----~~~~~~S 745 (1231)
.+++||+++|||-|+...-. |.++ . ...+-.|
T Consensus 681 vlmqlRK~AnHPLL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdS 760 (941)
T KOG0389|consen 681 VLMQLRKAANHPLLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDS 760 (941)
T ss_pred HHHHHHHHhcChhHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhh
Confidence 57899999999988742100 0111 0 1123469
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccc
Q 044798 746 EKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGG 825 (1231)
Q Consensus 746 ~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg 825 (1231)
+|..+|..||..++..|+||||||||++||||||..|...|+.|+|+||+|....||.+|+.||.+.+++|||+||++||
T Consensus 761 gK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG 840 (941)
T KOG0389|consen 761 GKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGG 840 (941)
T ss_pred hhHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCcch
Q 044798 826 LGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ 899 (1231)
Q Consensus 826 ~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~d~~~ 899 (1231)
.||||++||+|||+|.++||..+.||.+|+||+||+|+|+|||||+++||||.|+++...|..|-..+..+.+.
T Consensus 841 ~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~k~ 914 (941)
T KOG0389|consen 841 FGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDGKG 914 (941)
T ss_pred ceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHHHHHHHHHHhhhhhhhhccCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988877653
No 7
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=2e-84 Score=819.48 Aligned_cols=477 Identities=34% Similarity=0.587 Sum_probs=413.6
Q ss_pred cChhhhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhh-cCCCCcEEEEeCCcchHHHHHHHHHH
Q 044798 394 IPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF-SNMYKPSIVVCPVTLLRQWKREAEKW 472 (1231)
Q Consensus 394 iP~~i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~-s~~~kpvLIV~P~sLl~QW~~E~~kw 472 (1231)
.|..+...|+|||++||+||+.++..+.|||||||||||||+|+|+++..++. .+..+|+|||||++++.||.+||.+|
T Consensus 162 qP~~i~~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~SlL~nW~~Ei~kw 241 (1033)
T PLN03142 162 QPSCIKGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRF 241 (1033)
T ss_pred CChHhccchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChHHHHHHHHHHHHH
Confidence 47778889999999999999999999999999999999999999999998865 45678999999999999999999999
Q ss_pred cCCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh
Q 044798 473 YPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK 552 (1231)
Q Consensus 473 ~p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~ 552 (1231)
+|.+++++++|.......... .......++|+||||+++......
T Consensus 242 ~p~l~v~~~~G~~~eR~~~~~-----------------------------------~~~~~~~~dVvITSYe~l~~e~~~ 286 (1033)
T PLN03142 242 CPVLRAVKFHGNPEERAHQRE-----------------------------------ELLVAGKFDVCVTSFEMAIKEKTA 286 (1033)
T ss_pred CCCCceEEEeCCHHHHHHHHH-----------------------------------HHhcccCCCcceecHHHHHHHHHH
Confidence 999999999986542211100 011123578999999999999999
Q ss_pred hhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccC
Q 044798 553 LLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVG 632 (1231)
Q Consensus 553 L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g 632 (1231)
|..+.|++|||||||+|||+.|+++++++.+.+.+||+|||||+||++.|||+|++||.|+.|++...|..+|..+..
T Consensus 287 L~k~~W~~VIvDEAHrIKN~~Sklskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~-- 364 (1033)
T PLN03142 287 LKRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGE-- 364 (1033)
T ss_pred hccCCCCEEEEcCccccCCHHHHHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999976321
Q ss_pred CCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHH-HHhhcCcch
Q 044798 633 GYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVE-QILDGSRNS 711 (1231)
Q Consensus 633 ~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~-~il~~~~~~ 711 (1231)
.........|+.++.|||+||+|.+|...||++.+.+++|.|++.|+.+|+.++...... .........
T Consensus 365 ----------~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~L 434 (1033)
T PLN03142 365 ----------NDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRL 434 (1033)
T ss_pred ----------cchHHHHHHHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 112345678999999999999999999999999999999999999999999988653211 111112234
Q ss_pred hHHHHHHHHHhCChhhhhhhhhcCC--CCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcE
Q 044798 712 LYGIDVMRKICNHPDLLEREQSCQI--PDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEY 789 (1231)
Q Consensus 712 l~~i~~LRkicnHPdLl~~~~~~~~--~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~ 789 (1231)
+..++.||++||||.|+........ ........|+|+.+|..+|..+...|+||||||||+.|+++|+.+|...|+.|
T Consensus 435 lnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y 514 (1033)
T PLN03142 435 LNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQY 514 (1033)
T ss_pred HHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcE
Confidence 5667889999999999864322110 11123457999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhCC-CCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEE
Q 044798 790 RRMDGLTPVKQRMALIDEYNNS-SDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYR 868 (1231)
Q Consensus 790 ~rIdGsts~~eRq~iId~Fn~d-~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYR 868 (1231)
++|||+++..+|+.+|+.||.+ +..+|||+||++||+||||+.|++||+||+||||..+.||+||+|||||+++|+|||
T Consensus 515 ~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyR 594 (1033)
T PLN03142 515 CRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFR 594 (1033)
T ss_pred EEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEE
Confidence 9999999999999999999974 456899999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHhcCcc--hhcccCHhHHHHhhccCCC
Q 044798 869 LITRGTIEEKVYHRQIYKHFLTNKILKNPQ--QRRFFKARNMKDLFTLNDD 917 (1231)
Q Consensus 869 Lit~gTIEEkIy~rQ~~K~~L~n~vl~d~~--~~r~f~~~dl~dLF~l~~~ 917 (1231)
|++.|||||+|+.++..|..|...|+.+.. ....++.++|.+||.++.+
T Consensus 595 LIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~~~~~~~~~~eL~~ll~~ga~ 645 (1033)
T PLN03142 595 FCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRYGAE 645 (1033)
T ss_pred EEeCCcHHHHHHHHHHHHHHHHHHHHhcCcccccccCCHHHHHHHHHhChH
Confidence 999999999999999999999999997543 2356888999999987543
No 8
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=1.9e-85 Score=799.62 Aligned_cols=469 Identities=37% Similarity=0.647 Sum_probs=411.2
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcC-CCCcEEEEeCCcchHHHHHHHHHHcCCCeE
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN-MYKPSIVVCPVTLLRQWKREAEKWYPSFHV 478 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~-~~kpvLIV~P~sLl~QW~~E~~kw~p~lrV 478 (1231)
..|++||.+||+||..+++.+..||||||||||||||.|+||.++.... ..+|+|||+|.+.+.+|.+||..|. .+++
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst~~~W~~ef~~w~-~mn~ 447 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLSTITAWEREFETWT-DMNV 447 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhhhHHHHHHHHHHh-hhce
Confidence 5799999999999999999999999999999999999999999998776 7899999999999999999999999 9999
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcCCc
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEW 558 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~~w 558 (1231)
++|||........+. |+...... .+ .-.++++||||+.+..+...|..++|
T Consensus 448 i~y~g~~~sr~~i~~------------------ye~~~~~~-~~----------~lkf~~lltTye~~LkDk~~L~~i~w 498 (1373)
T KOG0384|consen 448 IVYHGNLESRQLIRQ------------------YEFYHSSN-TK----------KLKFNALLTTYEIVLKDKAELSKIPW 498 (1373)
T ss_pred eeeecchhHHHHHHH------------------HHheecCC-cc----------ccccceeehhhHHHhccHhhhccCCc
Confidence 999998765544433 11111110 00 11368999999999999999999999
Q ss_pred cEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCCCCCC
Q 044798 559 GYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANAS 638 (1231)
Q Consensus 559 d~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~~as 638 (1231)
.++++||||++||..|..+..+..+...||+++||||+||++.|||+|++|+.|+.|.+...|...|..
T Consensus 499 ~~~~vDeahrLkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~----------- 567 (1373)
T KOG0384|consen 499 RYLLVDEAHRLKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDE----------- 567 (1373)
T ss_pred ceeeecHHhhcCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999988732
Q ss_pred hhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcC----cchhHH
Q 044798 639 PLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGS----RNSLYG 714 (1231)
Q Consensus 639 ~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~----~~~l~~ 714 (1231)
....-...|+..|.||||||+|.||...||+|.|+++.|.||+.|+++|+.+|...- ..+..|. .+.+..
T Consensus 568 -----~~e~~~~~L~~~L~P~~lRr~kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~-~~LtKG~~g~~~~lLNi 641 (1373)
T KOG0384|consen 568 -----ETEEQVRKLQQILKPFLLRRLKKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNF-SALTKGAKGSTPSLLNI 641 (1373)
T ss_pred -----hhHHHHHHHHHHhhHHHHHHHHhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhH-HHHhccCCCCCchHHHH
Confidence 112335679999999999999999999999999999999999999999999997642 2222222 233445
Q ss_pred HHHHHHHhCChhhhhhhhhcCCCCCC----------CCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHH
Q 044798 715 IDVMRKICNHPDLLEREQSCQIPDYG----------NPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIA 784 (1231)
Q Consensus 715 i~~LRkicnHPdLl~~~~~~~~~d~~----------~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~ 784 (1231)
++-|++|||||.|+.........++. .+..||||..|..||..+++.|||||||||.+.|||||+.+|..
T Consensus 642 mmELkKccNHpyLi~gaee~~~~~~~~~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~ 721 (1373)
T KOG0384|consen 642 MMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSL 721 (1373)
T ss_pred HHHHHHhcCCccccCcHHHHHHHhhhhcchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHH
Confidence 56699999999999765543333333 24579999999999999999999999999999999999999999
Q ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhC-CCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCccc
Q 044798 785 SGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQD 863 (1231)
Q Consensus 785 ~Gi~~~rIdGsts~~eRq~iId~Fn~-d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~ 863 (1231)
+||+|.||||++..+.|+.+|++||. +++.||||+||+|||+||||+.|++|||||.+|||..+.||..|||||||++.
T Consensus 722 r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~ 801 (1373)
T KOG0384|consen 722 RGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKH 801 (1373)
T ss_pred cCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccce
Confidence 99999999999999999999999997 56789999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCc------chhcccCHhHHHHhhccC
Q 044798 864 VTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNP------QQRRFFKARNMKDLFTLN 915 (1231)
Q Consensus 864 V~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~d~------~~~r~f~~~dl~dLF~l~ 915 (1231)
|.|||||+.||+||-|++|...|..|-..|+..- .....|+..+|.+|+.++
T Consensus 802 VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfG 859 (1373)
T KOG0384|consen 802 VNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFG 859 (1373)
T ss_pred EEEEEEecCCchHHHHHHHHHHHhhhHHHHHHhhccccccCCCCCCCHHHHHHHHHhc
Confidence 9999999999999999999999999999998522 234679999998887553
No 9
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=5.4e-82 Score=766.04 Aligned_cols=494 Identities=36% Similarity=0.556 Sum_probs=426.9
Q ss_pred CCcccChhhhhhchHHHHHHHHHHHHHHc------CCCcEEEEeCCCchHHHHHHHHHHHHhhcCCC-----CcEEEEeC
Q 044798 390 GGLKIPESIFNNLFDYQKVGVQWLWELHC------QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMY-----KPSIVVCP 458 (1231)
Q Consensus 390 ~~~~iP~~i~~~L~pyQkegV~wL~el~~------~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~-----kpvLIV~P 458 (1231)
..+-+.|.+...|+|||++|+.|||++.. ...|||+||+||+|||+|+|+||.++....+. ..+|||||
T Consensus 227 v~v~~dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P 306 (776)
T KOG0390|consen 227 VHVVIDPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAP 306 (776)
T ss_pred ceEEecccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEcc
Confidence 55677888999999999999999999754 34699999999999999999999999888777 88999999
Q ss_pred CcchHHHHHHHHHHcCC--CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCC
Q 044798 459 VTLLRQWKREAEKWYPS--FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSES 536 (1231)
Q Consensus 459 ~sLl~QW~~E~~kw~p~--lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~ 536 (1231)
.+|+.+|.+||.+|... +....+.+..+. .....+.| +.-....-..
T Consensus 307 ~sLv~nWkkEF~KWl~~~~i~~l~~~~~~~~-----------------------------~w~~~~si--l~~~~~~~~~ 355 (776)
T KOG0390|consen 307 SSLVNNWKKEFGKWLGNHRINPLDFYSTKKS-----------------------------SWIKLKSI--LFLGYKQFTT 355 (776)
T ss_pred HHHHHHHHHHHHHhccccccceeeeecccch-----------------------------hhhhhHHH--HHhhhhheeE
Confidence 99999999999999863 444444443221 00000001 1111112334
Q ss_pred CEEEeCHHHHHHHHhhhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCC
Q 044798 537 GLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLG 616 (1231)
Q Consensus 537 ~VvItTYe~Lr~~~~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg 616 (1231)
-|+|.+|++++.+...+....++++||||||+.||..+.+++++..+++++|++|||||+||++.|+|++++|++|+.||
T Consensus 356 ~vli~sye~~~~~~~~il~~~~glLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lg 435 (776)
T KOG0390|consen 356 PVLIISYETASDYCRKILLIRPGLLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLG 435 (776)
T ss_pred EEEeccHHHHHHHHHHHhcCCCCeEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhcc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHH
Q 044798 617 VLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFL 696 (1231)
Q Consensus 617 ~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l 696 (1231)
+...|...|..|+..++.++++...... ...+..|+.++..|++||+-..+.+.||++.++||+|.+++.|..+|..++
T Consensus 436 s~~sf~k~~~~~i~~~~~~~~s~e~~~~-~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~ 514 (776)
T KOG0390|consen 436 SISSFKKKFEIPILRGRDADASEEDRER-EERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLL 514 (776)
T ss_pred chHHHHHHhhcccccccCCCcchhhhhh-HHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHH
Confidence 9999999999999999999888777766 444899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcC-----------------CCCCCCCCcchHHHHHHHHHHHHH
Q 044798 697 ASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQ-----------------IPDYGNPERSEKMKVVAQVLKVWK 759 (1231)
Q Consensus 697 ~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~-----------------~~d~~~~~~S~Kl~~L~eLLk~~~ 759 (1231)
.+. ....+.+. .+..+..|.++||||.|+.....+. ..+......|+|+.+|..+|...+
T Consensus 515 ~~~-~~~~~~~~--~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ 591 (776)
T KOG0390|consen 515 DSM-KMRTLKGY--ALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIR 591 (776)
T ss_pred HHH-Hhhhhhcc--hhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHh
Confidence 886 55555555 7888899999999999996222111 112334456899999999996665
Q ss_pred hc-CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCc-eEEEEeccccccccCCCCCCEEE
Q 044798 760 DQ-GHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDV-FIFILTTKVGGLGTNLTGANRVI 837 (1231)
Q Consensus 760 ~~-g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i-~VfLlSTkvGg~GLNLt~AnrVI 837 (1231)
+. ..++++.+++++++++++.+++-+|+.+++|||+|++.+|+.+|+.||+.++. +|||+|++|||+||||++|+|||
T Consensus 592 ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRli 671 (776)
T KOG0390|consen 592 EKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLI 671 (776)
T ss_pred hhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEE
Confidence 44 46777778899999999999999999999999999999999999999997665 99999999999999999999999
Q ss_pred EcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCcc-hhcccCHhHHHHhhccCC
Q 044798 838 IFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFFKARNMKDLFTLND 916 (1231)
Q Consensus 838 i~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~d~~-~~r~f~~~dl~dLF~l~~ 916 (1231)
+|||+|||+.+.||++||||.||+|+|+||||++.|||||+||+||..|+.|...|++... ..+.|..+++..+|++..
T Consensus 672 l~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~~~~~~~~~~~~~~~lf~~~~ 751 (776)
T KOG0390|consen 672 LFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEEEDVEKHFFTEDLKTLFDLEL 751 (776)
T ss_pred EeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCchHHHHHHHHHhhhhhheEEecccccccccchHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999998655 356666689999998876
Q ss_pred CC
Q 044798 917 DG 918 (1231)
Q Consensus 917 ~~ 918 (1231)
+.
T Consensus 752 ~~ 753 (776)
T KOG0390|consen 752 DT 753 (776)
T ss_pred cc
Confidence 53
No 10
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=3.3e-82 Score=731.13 Aligned_cols=467 Identities=35% Similarity=0.611 Sum_probs=412.1
Q ss_pred cCCcccChhhhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhc-CCCCcEEEEeCCcchHHHHH
Q 044798 389 EGGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS-NMYKPSIVVCPVTLLRQWKR 467 (1231)
Q Consensus 389 ~~~~~iP~~i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s-~~~kpvLIV~P~sLl~QW~~ 467 (1231)
...++.|.-+...|+.||..|++||..+|.++-+||||||||||||+|+|++++.|... ..+||+|||+|++++++|.+
T Consensus 555 t~tV~qPkil~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaStL~NWaq 634 (1185)
T KOG0388|consen 555 TRTVPQPKILKCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPASTLHNWAQ 634 (1185)
T ss_pred eeeccCchhhhhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHHHhHHHH
Confidence 34567788899999999999999999999999999999999999999999999999764 56799999999999999999
Q ss_pred HHHHHcCCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHH
Q 044798 468 EAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLR 547 (1231)
Q Consensus 468 E~~kw~p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr 547 (1231)
||.+|+|.++++.|.|+......-++.+. .+. +.. -..++||+||||+.+.
T Consensus 635 EisrFlP~~k~lpywGs~~eRkiLrKfw~------------------------rKn---mY~--rna~fhVviTSYQlvV 685 (1185)
T KOG0388|consen 635 EISRFLPSFKVLPYWGSPSERKILRKFWN------------------------RKN---MYR--RNAPFHVVITSYQLVV 685 (1185)
T ss_pred HHHHhCccceeecCcCChhhhHHHHHhcc------------------------hhh---hhc--cCCCceEEEEeeeeee
Confidence 99999999999999998876554443110 000 111 2367899999999999
Q ss_pred HHHhhhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhcc
Q 044798 548 LLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAV 627 (1231)
Q Consensus 548 ~~~~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~ 627 (1231)
.+..+|..+.|.|+|||||+.||...|..++.+..+++.+|++||||||||++.|||.|++|+.|..|.+..+|.+||..
T Consensus 686 tDeky~qkvKWQYMILDEAQAIKSSsS~RWKtLLsF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSK 765 (1185)
T KOG0388|consen 686 TDEKYLQKVKWQYMILDEAQAIKSSSSSRWKTLLSFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSK 765 (1185)
T ss_pred chHHHHHhhhhhheehhHHHHhhhhhhhHHHHHhhhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhc
Q 044798 628 PITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDG 707 (1231)
Q Consensus 628 pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~ 707 (1231)
.|......+.+- ....+.+|+.+++||||||.|++|..+|..|.+..++|.|+..|..+|+.+-.+....+..
T Consensus 766 dIEshAe~~~tl-----neqqL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E~~-- 838 (1185)
T KOG0388|consen 766 DIESHAEMNTTL-----NEQQLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISSMEME-- 838 (1185)
T ss_pred hhHhHHHhcCCc-----CHHHHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhHHHHH--
Confidence 888665555432 2345678999999999999999999999999999999999999999999886654322222
Q ss_pred CcchhHHHHHHHHHhCChhhhhhhhh------------------------------------------------------
Q 044798 708 SRNSLYGIDVMRKICNHPDLLEREQS------------------------------------------------------ 733 (1231)
Q Consensus 708 ~~~~l~~i~~LRkicnHPdLl~~~~~------------------------------------------------------ 733 (1231)
..+++||++||||+|+++...
T Consensus 839 -----~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~ 913 (1185)
T KOG0388|consen 839 -----NLVMQLRKVCNHPDLFERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLR 913 (1185)
T ss_pred -----HHHHHHHHhcCChHHHhhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhH
Confidence 357899999999999752110
Q ss_pred -------------------------------------------------------------------cCCCC--------
Q 044798 734 -------------------------------------------------------------------CQIPD-------- 738 (1231)
Q Consensus 734 -------------------------------------------------------------------~~~~d-------- 738 (1231)
|..|.
T Consensus 914 ~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI 993 (1185)
T KOG0388|consen 914 RIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLI 993 (1185)
T ss_pred hhhcCCCcchhcccceeeeccCCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeee
Confidence 00000
Q ss_pred --------C-------------------CCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEE
Q 044798 739 --------Y-------------------GNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRR 791 (1231)
Q Consensus 739 --------~-------------------~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~r 791 (1231)
. ..+..|+|+.+|.+||..++..||+||+|.|.+.|+|+|+.+|..+||.|+|
T Consensus 994 ~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylR 1073 (1185)
T KOG0388|consen 994 SNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLR 1073 (1185)
T ss_pred ecccCCCCCCccccCcccccceecCcHHhhhccccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhccceEE
Confidence 0 0013599999999999999999999999999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEe
Q 044798 792 MDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLIT 871 (1231)
Q Consensus 792 IdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit 871 (1231)
+||+.....|..+|.+|+. ++++|||+||++||+|||||+|++|||||.+|||..+.||++|+||+||+++|+||||++
T Consensus 1074 LDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~ 1152 (1185)
T KOG0388|consen 1074 LDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLIT 1152 (1185)
T ss_pred ecCcchhhHHHHHHhhccC-CceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecc
Confidence 9999999999999999999 699999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHhcCc
Q 044798 872 RGTIEEKVYHRQIYKHFLTNKILKNP 897 (1231)
Q Consensus 872 ~gTIEEkIy~rQ~~K~~L~n~vl~d~ 897 (1231)
+|||||+|.++...|..+...|+.+.
T Consensus 1153 rgTvEEk~l~rA~qK~~vQq~Vm~G~ 1178 (1185)
T KOG0388|consen 1153 RGTVEEKVLERANQKDEVQQMVMHGN 1178 (1185)
T ss_pred cccHHHHHHHHhhhHHHHHHHHHcCC
Confidence 99999999999999999999998763
No 11
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=1.7e-77 Score=673.30 Aligned_cols=474 Identities=28% Similarity=0.446 Sum_probs=405.2
Q ss_pred CCcccChhhhhhchHHHHHHHHHHHHHHc-CCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHH
Q 044798 390 GGLKIPESIFNNLFDYQKVGVQWLWELHC-QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKRE 468 (1231)
Q Consensus 390 ~~~~iP~~i~~~L~pyQkegV~wL~el~~-~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E 468 (1231)
.....|.++...|.|||++++.|+..+.. ...|||||||||+|||||+|+++.+- -...|+|||||...+.||.+|
T Consensus 173 e~aeqP~dlii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae---~~ra~tLVvaP~VAlmQW~nE 249 (791)
T KOG1002|consen 173 ERAEQPDDLIIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAE---VDRAPTLVVAPTVALMQWKNE 249 (791)
T ss_pred hcccCcccceecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhc---cccCCeeEEccHHHHHHHHHH
Confidence 34566889999999999999999987765 56799999999999999999998772 344689999999999999999
Q ss_pred HHHHc-CCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHH
Q 044798 469 AEKWY-PSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLR 547 (1231)
Q Consensus 469 ~~kw~-p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr 547 (1231)
|.+++ +.++|++|||.......+ . ...++||+|||..+.
T Consensus 250 I~~~T~gslkv~~YhG~~R~~nik--------------------------------------e--l~~YDvVLTty~vvE 289 (791)
T KOG1002|consen 250 IERHTSGSLKVYIYHGAKRDKNIK--------------------------------------E--LMNYDVVLTTYAVVE 289 (791)
T ss_pred HHHhccCceEEEEEecccccCCHH--------------------------------------H--hhcCcEEEEecHHHH
Confidence 99998 458999999865421111 1 145799999999885
Q ss_pred HHH-----------------hhhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhh
Q 044798 548 LLG-----------------EKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFV 610 (1231)
Q Consensus 548 ~~~-----------------~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL 610 (1231)
... +.|+.+.|.+|||||||.||+..|.+++|+..|++.+||+|||||+||++.|||||++||
T Consensus 290 s~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~~L~tt~rw~LSGTPLQNrigElySLiRFL 369 (791)
T KOG1002|consen 290 SVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVFALETTYRWCLSGTPLQNRIGELYSLIRFL 369 (791)
T ss_pred HHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccccHHHHHHhhHhhhhhhccCCcchhhHHHHHHHHHHH
Confidence 322 348899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC-------------------------------hhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHH
Q 044798 611 FPGKLGV-------------------------------LPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPY 659 (1231)
Q Consensus 611 ~P~~lg~-------------------------------~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~ 659 (1231)
...+|.. ...|...+..||+..|+.... .......+.++..+
T Consensus 370 ~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~IqkfG~eGpG-------k~af~~~h~llk~I 442 (791)
T KOG1002|consen 370 NINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQKFGVEGPG-------KEAFNNIHTLLKNI 442 (791)
T ss_pred ccCcchhhhhhhccccccceeecccccCCcccchhhhhhhhhcccccccchhhcccCch-------HHHHHHHHHHHHHH
Confidence 6655421 135666777888888776643 34445678888999
Q ss_pred HHHHHHHHHhh--cCCCceEEEEEecCCHHHHHHHHHHHhhH--------HHHHHhhcCcchhHHHHHHHHHhCChhhhh
Q 044798 660 LLRRMKADVNA--QLPKKTEHVLFCSLTEEQRAVYRAFLASS--------EVEQILDGSRNSLYGIDVMRKICNHPDLLE 729 (1231)
Q Consensus 660 ~LRRtK~dV~~--dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~--------~~~~il~~~~~~l~~i~~LRkicnHPdLl~ 729 (1231)
|+||||-.-+. .|||+...+..--++..+.++|+.++... +...+++++.+.|..|.+|||+.+||+|+.
T Consensus 443 mlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ~aDHP~LVl 522 (791)
T KOG1002|consen 443 MLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQAADHPDLVL 522 (791)
T ss_pred HHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHHhccCcceee
Confidence 99999987665 48999999999999999999999987654 234667888999999999999999999973
Q ss_pred hh------------------------------------------------------hhcCCC------------------
Q 044798 730 RE------------------------------------------------------QSCQIP------------------ 737 (1231)
Q Consensus 730 ~~------------------------------------------------------~~~~~~------------------ 737 (1231)
.. +.|.++
T Consensus 523 ~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDlse~alek~~l~~F 602 (791)
T KOG1002|consen 523 YSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDLSEPALEKTDLKGF 602 (791)
T ss_pred ehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccccchhhhhcchhhh
Confidence 20 001100
Q ss_pred ---------CCCCCCcchHHHHHHHHHHHHHhc--CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHH
Q 044798 738 ---------DYGNPERSEKMKVVAQVLKVWKDQ--GHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALID 806 (1231)
Q Consensus 738 ---------d~~~~~~S~Kl~~L~eLLk~~~~~--g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId 806 (1231)
+...+..|.|+++|.+-|..+.+. .-|.||||||+.|||+|+..|.+.|+.++.+.|+|+...|...|+
T Consensus 603 k~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik 682 (791)
T KOG1002|consen 603 KASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIK 682 (791)
T ss_pred hhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHH
Confidence 123456799999999999988765 358999999999999999999999999999999999999999999
Q ss_pred HHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 044798 807 EYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYK 886 (1231)
Q Consensus 807 ~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~rQ~~K 886 (1231)
.|.++++|.|||+|.++||+.|||+.|++|+++||||||+..+||.+|+|||||.+||.|.||++++||||+|.++|..|
T Consensus 683 ~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsiE~kIieLQeKK 762 (791)
T KOG1002|consen 683 YFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSIEEKIIELQEKK 762 (791)
T ss_pred HhccCCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCcch-hcccCHhHHHHhhc
Q 044798 887 HFLTNKILKNPQQ-RRFFKARNMKDLFT 913 (1231)
Q Consensus 887 ~~L~n~vl~d~~~-~r~f~~~dl~dLF~ 913 (1231)
..++...+++.+. -..++.+||+-||+
T Consensus 763 a~mihaTi~qde~Ai~kLt~eDmqfLF~ 790 (791)
T KOG1002|consen 763 ANMIHATIGQDEEAISKLTEEDMQFLFN 790 (791)
T ss_pred hhhhhhhcCCcHHHHHhcCHHHHHHHhc
Confidence 9999999986553 35788999999885
No 12
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=4.4e-78 Score=724.04 Aligned_cols=458 Identities=35% Similarity=0.630 Sum_probs=408.0
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhc-CCCCcEEEEeCCcchHHHHHHHHHHcCCCeE
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS-NMYKPSIVVCPVTLLRQWKREAEKWYPSFHV 478 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s-~~~kpvLIV~P~sLl~QW~~E~~kw~p~lrV 478 (1231)
..|++||+.|++||..+|.++.+||||||||||||||+|++|.+++.. +..+|.|||||.+++.+|..||.+|.|.+..
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL~NW~~Ef~kWaPSv~~ 472 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTLVNWSSEFPKWAPSVQK 472 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccccCCchhhccccccceee
Confidence 479999999999999999999999999999999999999999999764 4569999999999999999999999999999
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcCCc
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEW 558 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~~w 558 (1231)
.+|.|+...... +...+....++|++|||+.+......|..+.|
T Consensus 473 i~YkGtp~~R~~------------------------------------l~~qir~gKFnVLlTtyEyiikdk~lLsKI~W 516 (1157)
T KOG0386|consen 473 IQYKGTPQQRSG------------------------------------LTKQQRHGKFNVLLTTYEYIIKDKALLSKISW 516 (1157)
T ss_pred eeeeCCHHHHhh------------------------------------HHHHHhcccceeeeeeHHHhcCCHHHHhccCC
Confidence 999887653211 33444457789999999999998899999999
Q ss_pred cEEEEeCCcccCCcchHHHHHHH-hcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCC-CC
Q 044798 559 GYAVLDEGHRIRNPNAEISLVCK-QLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGY-AN 636 (1231)
Q Consensus 559 d~VILDEAH~IKN~~Sk~skalk-~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~-~~ 636 (1231)
.|+||||+|+|||..++.+..+. ...+.+|++|||||+||++.|||+||+|+-|..|.+...|..||..|+...|. ..
T Consensus 517 ~yMIIDEGHRmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~e 596 (1157)
T KOG0386|consen 517 KYMIIDEGHRMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVE 596 (1157)
T ss_pred cceeecccccccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCccc
Confidence 99999999999999999999999 77999999999999999999999999999999999999999999999988773 33
Q ss_pred CChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHH----HHhhcCcchh
Q 044798 637 ASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVE----QILDGSRNSL 712 (1231)
Q Consensus 637 as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~----~il~~~~~~l 712 (1231)
.+..+. .-....|++.+.||+|||.|.+|...||.|.+.|+.|.|+..|+.+|..+.....+. ....+++..+
T Consensus 597 LteEEt---lLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~ 673 (1157)
T KOG0386|consen 597 LTEEET---LLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLF 673 (1157)
T ss_pred ccchHH---HHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhh
Confidence 333332 334567999999999999999999999999999999999999999999987543211 1223344455
Q ss_pred HHHHHHHHHhCChhhhhhhhhcCCCCCC---CCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcE
Q 044798 713 YGIDVMRKICNHPDLLEREQSCQIPDYG---NPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEY 789 (1231)
Q Consensus 713 ~~i~~LRkicnHPdLl~~~~~~~~~d~~---~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~ 789 (1231)
..++.||+|||||.++........+.++ .+-.+||+..|..+|.+++..||+||+|||.+.++++++.+|...+|.|
T Consensus 674 N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kY 753 (1157)
T KOG0386|consen 674 NTIMQLRKLCNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKY 753 (1157)
T ss_pred hHhHHHHHhcCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhhe
Confidence 6688999999999999654333333332 3456999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhC-CCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEE
Q 044798 790 RRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYR 868 (1231)
Q Consensus 790 ~rIdGsts~~eRq~iId~Fn~-d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYR 868 (1231)
+|+||+|...+|..+++.||. +..+++||+||++||+||||+.|++|||||++|||..+.||.+|+|||||+++|.|+|
T Consensus 754 lRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~r 833 (1157)
T KOG0386|consen 754 LRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLR 833 (1157)
T ss_pred eeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeee
Confidence 999999999999999999998 5689999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHhcC
Q 044798 869 LITRGTIEEKVYHRQIYKHFLTNKILKN 896 (1231)
Q Consensus 869 Lit~gTIEEkIy~rQ~~K~~L~n~vl~d 896 (1231)
|++.+++||+|+.++..|..+..+|+.-
T Consensus 834 l~tv~sveE~il~~a~~Kl~~d~kviqa 861 (1157)
T KOG0386|consen 834 LITVNSVEEKILAEAFYKLDVDGKVIQA 861 (1157)
T ss_pred eehhhHHHHHHHHHHHHhcCchHhhhhc
Confidence 9999999999999999999999999853
No 13
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=100.00 E-value=2.1e-73 Score=660.95 Aligned_cols=493 Identities=33% Similarity=0.563 Sum_probs=425.5
Q ss_pred CCcccChhhhhhchHHHHHHHHHHHHHH---------cCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCc
Q 044798 390 GGLKIPESIFNNLFDYQKVGVQWLWELH---------CQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVT 460 (1231)
Q Consensus 390 ~~~~iP~~i~~~L~pyQkegV~wL~el~---------~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~s 460 (1231)
..+.+-+.|...|+|||+-||+|||... +.+.|||||+.||||||+|+|+|+--++..-..+.+|+|+|..
T Consensus 243 e~iflapqla~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiN 322 (1387)
T KOG1016|consen 243 EDIFLAPQLAHVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPIN 322 (1387)
T ss_pred cceeehhhhHhhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCccceEEEEEehH
Confidence 4466778899999999999999998642 3467999999999999999999999998888899999999999
Q ss_pred chHHHHHHHHHHcCC-----------CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHH
Q 044798 461 LLRQWKREAEKWYPS-----------FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLIN 529 (1231)
Q Consensus 461 Ll~QW~~E~~kw~p~-----------lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~ 529 (1231)
.+.+|..||..|.|. +.|.++....+.+..+.+ ++.
T Consensus 323 TlQNWlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rak---------------------------------vi~ 369 (1387)
T KOG1016|consen 323 TLQNWLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAK---------------------------------VIE 369 (1387)
T ss_pred HHHHHHHHhhhhcCCCcccCCCccceeEEEEecCchhhHHHHHH---------------------------------HHH
Confidence 999999999999986 345555444433333222 233
Q ss_pred hhhcCCCCEEEeCHHHHHHHH--------------------------------------hhhhcCCccEEEEeCCcccCC
Q 044798 530 RVLRSESGLLITTYEQLRLLG--------------------------------------EKLLDVEWGYAVLDEGHRIRN 571 (1231)
Q Consensus 530 ~~~~~~~~VvItTYe~Lr~~~--------------------------------------~~L~~~~wd~VILDEAH~IKN 571 (1231)
. +...++|+++.|+++|.+. +.|....+|+|||||+|+|||
T Consensus 370 ~-Wv~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN 448 (1387)
T KOG1016|consen 370 Q-WVQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKN 448 (1387)
T ss_pred H-HhccCCEEEehHHHHHHHHHhcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceecc
Confidence 3 2355699999999997532 126677899999999999999
Q ss_pred cchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHH
Q 044798 572 PNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVV 651 (1231)
Q Consensus 572 ~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~ 651 (1231)
-.+.++.+++.|++.+||+|||-|+||||.|+|+|++|++|..||+...|.+.|..||.+|++.+.++.++..+..+...
T Consensus 449 ~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVRP~yLGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHV 528 (1387)
T KOG1016|consen 449 ITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVRPKYLGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHV 528 (1387)
T ss_pred chHHHHHHHHHhhhceeEEEeccccccchHHHhhhheeccccccchHHHHHHHhhccccCCccccCChhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCc--chhHHHHHHHHHhCChhhhh
Q 044798 652 LRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSR--NSLYGIDVMRKICNHPDLLE 729 (1231)
Q Consensus 652 Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~--~~l~~i~~LRkicnHPdLl~ 729 (1231)
|+.++..|+.||+...+...||.+.|+|+.++++..||++|+.|+......-...+.. +.|.++....+|+|||+++.
T Consensus 529 LhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR~LY~~Fm~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY 608 (1387)
T KOG1016|consen 529 LHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQRQLYRNFMLDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLY 608 (1387)
T ss_pred HHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHHHHHHHHHHHHHHhhccccccccChHHHHHHHHHhcCChHHHH
Confidence 9999999999999999999999999999999999999999999986543322233333 78888999999999999975
Q ss_pred hhhh---cCC----------------------------------------------------C----------CC-----
Q 044798 730 REQS---CQI----------------------------------------------------P----------DY----- 739 (1231)
Q Consensus 730 ~~~~---~~~----------------------------------------------------~----------d~----- 739 (1231)
+... |.. + .|
T Consensus 609 ~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~~~~~~s~~laSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~ 688 (1387)
T KOG1016|consen 609 RLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNSIPSNPSTPLASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTF 688 (1387)
T ss_pred HHHHHhhhhhhhhhhHHHHhhhcccccCCCCCCCCCCCCCcccchhhhhhcccCCcccCcCCCCcccccccccchhhHHH
Confidence 3210 000 0 00
Q ss_pred --------CCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc------------------CCcEEEEe
Q 044798 740 --------GNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS------------------GYEYRRMD 793 (1231)
Q Consensus 740 --------~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~------------------Gi~~~rId 793 (1231)
+..+.+.|+..+++++..-..-|.|+|||||....||+|+.+|.++ ...|++++
T Consensus 689 el~~nYq~gvLen~pk~V~~~~~~des~~~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rld 768 (1387)
T KOG1016|consen 689 ELFENYQEGVLENGPKIVISLEILDESTQIGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLD 768 (1387)
T ss_pred HHHhhhhcccccCCCceEEEEeeeccccccCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceeccc
Confidence 1112345666666666665666899999999999999999999764 34699999
Q ss_pred CCCCHHHHHHHHHHHhCCCCce-EEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeC
Q 044798 794 GLTPVKQRMALIDEYNNSSDVF-IFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITR 872 (1231)
Q Consensus 794 Gsts~~eRq~iId~Fn~d~~i~-VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~ 872 (1231)
|.++...|.++|++||+.+++. .||+||++|..||||.+||++|+||..|||..+.||++|+||+||+|+|+||||++.
T Consensus 769 G~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD 848 (1387)
T KOG1016|consen 769 GTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMD 848 (1387)
T ss_pred CCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhh
Confidence 9999999999999999988776 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHhcCcchhcccCHhHHHHhhccCC
Q 044798 873 GTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTLND 916 (1231)
Q Consensus 873 gTIEEkIy~rQ~~K~~L~n~vl~d~~~~r~f~~~dl~dLF~l~~ 916 (1231)
.++|-+||.||+.|+.|..+|++|-.....|+..|+..|+-+.+
T Consensus 849 ~~lEkkIydRQIsKqGmsdRvVDd~np~an~s~Ke~enLl~~~e 892 (1387)
T KOG1016|consen 849 NSLEKKIYDRQISKQGMSDRVVDDANPDANISQKELENLLMYDE 892 (1387)
T ss_pred hhhHHHHHHHHHhhccchhhhhcccCccccccHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999987765
No 14
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=5.5e-69 Score=626.18 Aligned_cols=465 Identities=29% Similarity=0.489 Sum_probs=387.7
Q ss_pred ChhhhhhchHHHHHHHHHHHHHHc-CCCcEEEEeCCCchHHHHHHHHHHHHhhc--------CCCCcEEEEeCCcchHHH
Q 044798 395 PESIFNNLFDYQKVGVQWLWELHC-QRAGGIIGDEMGLGKTIQVLSFLGALHFS--------NMYKPSIVVCPVTLLRQW 465 (1231)
Q Consensus 395 P~~i~~~L~pyQkegV~wL~el~~-~~~GgILADEMGLGKTIqaIA~L~~L~~s--------~~~kpvLIV~P~sLl~QW 465 (1231)
|..+...|.|||+.|+.||..... .+.||||||+||||||+.+|++|..-... ....++|||||+++++||
T Consensus 319 P~g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSli~qW 398 (901)
T KOG4439|consen 319 PDGLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASLIHQW 398 (901)
T ss_pred CCcceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHHHHHH
Confidence 556667899999999999966544 46799999999999999999999765321 112369999999999999
Q ss_pred HHHHHHHc--CCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCH
Q 044798 466 KREAEKWY--PSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTY 543 (1231)
Q Consensus 466 ~~E~~kw~--p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTY 543 (1231)
..|+.+-. ..++|++|||... ... -.+ ....|+||||||
T Consensus 399 ~~Ev~~rl~~n~LsV~~~HG~n~-r~i-------------------------------------~~~-~L~~YDvViTTY 439 (901)
T KOG4439|consen 399 EAEVARRLEQNALSVYLYHGPNK-REI-------------------------------------SAK-ELRKYDVVITTY 439 (901)
T ss_pred HHHHHHHHhhcceEEEEecCCcc-ccC-------------------------------------CHH-HHhhcceEEEee
Confidence 99999887 4589999998753 000 001 124579999999
Q ss_pred HHHHH----------HHhhhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCC
Q 044798 544 EQLRL----------LGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPG 613 (1231)
Q Consensus 544 e~Lr~----------~~~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~ 613 (1231)
..+-. ....|..+.|.+|||||||.|||+.++.+.+++.|.+.+|||||||||||++.++|+|+.||+..
T Consensus 440 ~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~ 519 (901)
T KOG4439|consen 440 NLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNTQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCP 519 (901)
T ss_pred eccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccchhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCC
Confidence 98865 12458889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhh-----cCCCceEEEEEecCCHHH
Q 044798 614 KLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNA-----QLPKKTEHVLFCSLTEEQ 688 (1231)
Q Consensus 614 ~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~-----dLP~K~e~vv~~~Lt~~Q 688 (1231)
.|+++..|..++..+-..| ..+|.=++++.||||||..... .||.+...++.++|+..+
T Consensus 520 pF~D~~~Wke~i~~~s~~g----------------~~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E 583 (901)
T KOG4439|consen 520 PFGDLKQWKENIDNMSKGG----------------ANRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDE 583 (901)
T ss_pred CcchHHHHHHhccCccccc----------------hhhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchH
Confidence 9999999999876543322 2346667889999999999876 799999999999999999
Q ss_pred HHHHHHHHhhHH--HHHHhh---------c---------------------------------CcchhHHHHHHHHHhCC
Q 044798 689 RAVYRAFLASSE--VEQILD---------G---------------------------------SRNSLYGIDVMRKICNH 724 (1231)
Q Consensus 689 r~lY~~~l~s~~--~~~il~---------~---------------------------------~~~~l~~i~~LRkicnH 724 (1231)
...|+.++.... +..++. + ....|..+.+|||+|+|
T Consensus 584 ~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH 663 (901)
T KOG4439|consen 584 AKVYQIMMEASKKLFKQFLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCH 663 (901)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccCccccchhccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcC
Confidence 999988765431 111110 0 00126668899999999
Q ss_pred hhhhhhhh--------------------------------hcC------------CCCCCCCCcchHHHHHHHHHHHH-H
Q 044798 725 PDLLEREQ--------------------------------SCQ------------IPDYGNPERSEKMKVVAQVLKVW-K 759 (1231)
Q Consensus 725 PdLl~~~~--------------------------------~~~------------~~d~~~~~~S~Kl~~L~eLLk~~-~ 759 (1231)
|.++.... .|. ..-|.....|.|+..+++++... .
T Consensus 664 ~~~~k~~ld~~~~~~~g~~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~ 743 (901)
T KOG4439|consen 664 FGLLKAALDPEEFQMNGGDDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILT 743 (901)
T ss_pred cchhccccCHHHhhhcCcchhhhhhhhhhHHHhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhh
Confidence 96642110 000 00122334689999999999987 5
Q ss_pred hcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCC-ceEEEEeccccccccCCCCCCEEEE
Q 044798 760 DQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSD-VFIFILTTKVGGLGTNLTGANRVII 838 (1231)
Q Consensus 760 ~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~-i~VfLlSTkvGg~GLNLt~AnrVIi 838 (1231)
...+|++|.|||+.+|++++..|+..|+.|..++|...+++|+.+|+.||...+ .+|+|+|.-+||+||||++|||+|+
T Consensus 744 ~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlil 823 (901)
T KOG4439|consen 744 SSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLIL 823 (901)
T ss_pred cccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEE
Confidence 568899999999999999999999999999999999999999999999998654 8999999999999999999999999
Q ss_pred cCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCcch--hcccCHhHHHHhhcc
Q 044798 839 FDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ--RRFFKARNMKDLFTL 914 (1231)
Q Consensus 839 ~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~d~~~--~r~f~~~dl~dLF~l 914 (1231)
+|..|||+-+.||.+|+||+||+|+|+||||++.||||++|..+|..|..|+..|+.+... .+-++..+|+-||.+
T Consensus 824 vDlHWNPaLEqQAcDRIYR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~G~~tr~~~kLT~adlk~LFgl 901 (901)
T KOG4439|consen 824 VDLHWNPALEQQACDRIYRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLTGSATRKMNKLTLADLKKLFGL 901 (901)
T ss_pred EecccCHHHHHHHHHHHHHhcccCceEEEEEEecCcHHHHHHHHHHHHHHHHhhhccCccccccccccHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999987654 467888999999974
No 15
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=5.6e-67 Score=670.56 Aligned_cols=481 Identities=40% Similarity=0.649 Sum_probs=417.6
Q ss_pred hhhhhhchHHHHHHHHHHH-HHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCC--CCcEEEEeCCcchHHHHHHHHHH
Q 044798 396 ESIFNNLFDYQKVGVQWLW-ELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM--YKPSIVVCPVTLLRQWKREAEKW 472 (1231)
Q Consensus 396 ~~i~~~L~pyQkegV~wL~-el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~--~kpvLIV~P~sLl~QW~~E~~kw 472 (1231)
..+...|+|||.+|+.|++ .+.....||||||+||+|||+|+|+++..+..... .+|+|||||.+++.+|.+|+.+|
T Consensus 333 ~~~~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~~nw~~e~~k~ 412 (866)
T COG0553 333 VDLSAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLLSNWKREFEKF 412 (866)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHHHHHHHHHhhh
Confidence 5677889999999999999 78888999999999999999999999988655444 57999999999999999999999
Q ss_pred cCCCe-EEEEecccch-hhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhc----CCCCEEEeCHHHH
Q 044798 473 YPSFH-VELLHDSAQD-LGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLR----SESGLLITTYEQL 546 (1231)
Q Consensus 473 ~p~lr-V~il~gs~~~-~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~----~~~~VvItTYe~L 546 (1231)
.|.++ +.+++|.... ..... ....... ..++|++|||+.+
T Consensus 413 ~~~~~~~~~~~g~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~v~itty~~l 458 (866)
T COG0553 413 APDLRLVLVYHGEKSELDKKRE----------------------------------ALRDLLKLHLVIIFDVVITTYELL 458 (866)
T ss_pred CccccceeeeeCCcccccHHHH----------------------------------HHHHHhhhcccceeeEEechHHHH
Confidence 99999 8888876531 00000 1111111 2268999999999
Q ss_pred HH---HHhhhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhh-hhcCCCCC-ChhHH
Q 044798 547 RL---LGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFD-FVFPGKLG-VLPVF 621 (1231)
Q Consensus 547 r~---~~~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~-FL~P~~lg-~~~~F 621 (1231)
+. ....+....|+++|+||||+|||..+..+++++.+++.+|++|||||++|++.|||++++ |+.|+.++ ....|
T Consensus 459 ~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f 538 (866)
T COG0553 459 RRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIF 538 (866)
T ss_pred HHhhhhHHHHhhceeeeeehhhHHHHhhhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHH
Confidence 99 888999999999999999999999999999999999999999999999999999999999 99999999 67999
Q ss_pred HHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHH--HhhcCCCceEEEEEecCCHHHHHHHHHHHhh-
Q 044798 622 EAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKAD--VNAQLPKKTEHVLFCSLTEEQRAVYRAFLAS- 698 (1231)
Q Consensus 622 ~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~d--V~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s- 698 (1231)
..+|..|+......+. ..........|+.++.||++||++.+ +..+||++.+.+++|.+++.|+.+|..++..
T Consensus 539 ~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~ 614 (866)
T COG0553 539 TRLFEKPIQAEEDIGP----LEARELGIELLRKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGA 614 (866)
T ss_pred HHHHhhhhhhcccccc----hhhHHHHHHHHHHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHH
Confidence 9999999988776554 23334455559999999999999999 8889999999999999999999999999882
Q ss_pred ----HHHHHHhhc----------CcchhHHHHHHHHHhCChhhhhhh-hhcCCC--------------CCCCCCcc-hHH
Q 044798 699 ----SEVEQILDG----------SRNSLYGIDVMRKICNHPDLLERE-QSCQIP--------------DYGNPERS-EKM 748 (1231)
Q Consensus 699 ----~~~~~il~~----------~~~~l~~i~~LRkicnHPdLl~~~-~~~~~~--------------d~~~~~~S-~Kl 748 (1231)
..+...... ..+.+..+..||++|+||.++... ...... ....+..+ +|+
T Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~ 694 (866)
T COG0553 615 EKNQQLLEDLEKADSDENRIGDSELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKL 694 (866)
T ss_pred HHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHH
Confidence 223332222 446777889999999999998765 211110 11223456 999
Q ss_pred HHHHHHH-HHHHhcCC--eEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccc
Q 044798 749 KVVAQVL-KVWKDQGH--RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGG 825 (1231)
Q Consensus 749 ~~L~eLL-k~~~~~g~--KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg 825 (1231)
..+.++| ..+..+|+ |+|||+||+.|+++|+.+|...++.|++++|+++...|+.+|+.|++++.+.|||+++++||
T Consensus 695 ~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg 774 (866)
T COG0553 695 QALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGG 774 (866)
T ss_pred HHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccc
Confidence 9999999 78899999 99999999999999999999999999999999999999999999999888999999999999
Q ss_pred cccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcC--cchhccc
Q 044798 826 LGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKN--PQQRRFF 903 (1231)
Q Consensus 826 ~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~d--~~~~r~f 903 (1231)
+||||++|++||+|||||||+.+.||++|+||+||+++|.||||+++|||||+|+.+|..|+.+...++++ ......+
T Consensus 775 ~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~~~~~~~~~~ 854 (866)
T COG0553 775 LGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDAEGEKELSKL 854 (866)
T ss_pred cceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCcHHHHHHHHHHHHHHHHHHHhhhhcccchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985 4456778
Q ss_pred CHhHHHHhhcc
Q 044798 904 KARNMKDLFTL 914 (1231)
Q Consensus 904 ~~~dl~dLF~l 914 (1231)
...++.+||..
T Consensus 855 ~~~~~~~l~~~ 865 (866)
T COG0553 855 SIEDLLDLFSL 865 (866)
T ss_pred cHHHHHHHhcc
Confidence 88888888864
No 16
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.4e-55 Score=498.20 Aligned_cols=426 Identities=25% Similarity=0.370 Sum_probs=336.6
Q ss_pred cChhhhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHHc
Q 044798 394 IPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWY 473 (1231)
Q Consensus 394 iP~~i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw~ 473 (1231)
+|+.+...|+|||++||.|.++ .++.++||||||||||+|||++..++. .-+|.|||||++|...|..++.+|+
T Consensus 191 ~d~kLvs~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyr---aEwplliVcPAsvrftWa~al~r~l 264 (689)
T KOG1000|consen 191 MDPKLVSRLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYR---AEWPLLIVCPASVRFTWAKALNRFL 264 (689)
T ss_pred cCHHHHHhhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHh---hcCcEEEEecHHHhHHHHHHHHHhc
Confidence 4889999999999999999866 677899999999999999999887764 3479999999999999999999999
Q ss_pred CCCeE-EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh
Q 044798 474 PSFHV-ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK 552 (1231)
Q Consensus 474 p~lrV-~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~ 552 (1231)
|.... .+..++.... . | +-....|.|++|+.+..+...
T Consensus 265 ps~~pi~vv~~~~D~~-------------~---------~-------------------~~t~~~v~ivSye~ls~l~~~ 303 (689)
T KOG1000|consen 265 PSIHPIFVVDKSSDPL-------------P---------D-------------------VCTSNTVAIVSYEQLSLLHDI 303 (689)
T ss_pred ccccceEEEecccCCc-------------c---------c-------------------cccCCeEEEEEHHHHHHHHHH
Confidence 87544 3333221100 0 0 011236999999999999999
Q ss_pred hhcCCccEEEEeCCcccCCcchHHHHHHHhc--ccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccc
Q 044798 553 LLDVEWGYAVLDEGHRIRNPNAEISLVCKQL--QTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIT 630 (1231)
Q Consensus 553 L~~~~wd~VILDEAH~IKN~~Sk~skalk~L--~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~ 630 (1231)
|....|..||+||+|.+|+..++.++++..+ ...|.|+|||||-..++.|||.++..+.+..+..+.+|-..|+.--.
T Consensus 304 l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~ 383 (689)
T KOG1000|consen 304 LKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQ 383 (689)
T ss_pred HhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccc
Confidence 9998999999999999999999999998877 67889999999999999999999999999999999999999987544
Q ss_pred cCCCCCCChhhHhHHHHHHHHHHHHHh-HHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHH-HHHhhcC
Q 044798 631 VGGYANASPLQVSTAYRCAVVLRDLIM-PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEV-EQILDGS 708 (1231)
Q Consensus 631 ~g~~~~as~~~v~~~~k~~~~Lr~lI~-p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~-~~il~~~ 708 (1231)
.+...+.+ +--++.+|.-++. ..|+||+|.+|..+||+|...|+++- +..+-..-..+.....- ...-...
T Consensus 384 vr~~~Dyk------g~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~-~gr~da~~~~lv~~a~~~t~~~~~e 456 (689)
T KOG1000|consen 384 VRFCFDYK------GCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVS-GGRIDARMDDLVKAAADYTKVNSME 456 (689)
T ss_pred cceeeecC------CCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEc-CCccchHHHHHHHHhhhcchhhhhh
Confidence 43222211 1112445665554 56899999999999999977766653 22222222222211100 0000000
Q ss_pred cchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHH----HHhcCCeEEEEeccHHHHHHHHHHHHH
Q 044798 709 RNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKV----WKDQGHRVLLFAQTQQMLDILESFLIA 784 (1231)
Q Consensus 709 ~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~----~~~~g~KVLVFSQ~~~~LdiLe~~L~~ 784 (1231)
++...++...++. .-.|+..+.+.|.. .-..+.|+|||+.+..+||-|+.++..
T Consensus 457 ~~~~~l~l~y~~t----------------------giaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~ 514 (689)
T KOG1000|consen 457 RKHESLLLFYSLT----------------------GIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNK 514 (689)
T ss_pred hhhHHHHHHHHHh----------------------cccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHH
Confidence 1111111111111 23455666666555 345578999999999999999999999
Q ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccE
Q 044798 785 SGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864 (1231)
Q Consensus 785 ~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V 864 (1231)
+++.++||||+|+...|+.+++.|+.+..+.|-+++.-++|+||+|++|+.|||.+.+|||....||.+|+||+||+..|
T Consensus 515 r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV 594 (689)
T KOG1000|consen 515 RKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSV 594 (689)
T ss_pred cCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHHHHhc
Q 044798 865 TVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895 (1231)
Q Consensus 865 ~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~ 895 (1231)
.||+|+++||+||.+|.....|......+-.
T Consensus 595 ~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~gl 625 (689)
T KOG1000|consen 595 FVQYLVAKGTADDYMWPMLQQKLDVLGSVGL 625 (689)
T ss_pred eEEEEEecCchHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999887766543
No 17
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=9e-55 Score=549.19 Aligned_cols=434 Identities=20% Similarity=0.252 Sum_probs=327.8
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHHcCCCeEE
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVE 479 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw~p~lrV~ 479 (1231)
..|+|||...+.++.. ....++||||||||||||+|++++..+...+..+|+|||||.+|+.||..|+.+|+ ++.+.
T Consensus 151 ~~l~pHQl~~~~~vl~--~~~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~sL~~QW~~El~~kF-~l~~~ 227 (956)
T PRK04914 151 ASLIPHQLYIAHEVGR--RHAPRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPETLQHQWLVEMLRRF-NLRFS 227 (956)
T ss_pred CCCCHHHHHHHHHHhh--ccCCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCHHHHHHHHHHHHHHh-CCCeE
Confidence 4589999999987755 34678999999999999999999999988888899999999999999999999887 35566
Q ss_pred EEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHH---hhhhcC
Q 044798 480 LLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLG---EKLLDV 556 (1231)
Q Consensus 480 il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~---~~L~~~ 556 (1231)
++.+..... .. ......| ...+++|+||+.++... +.+...
T Consensus 228 i~~~~~~~~-~~--------------------------~~~~~pf---------~~~~~vI~S~~~l~~~~~~~~~l~~~ 271 (956)
T PRK04914 228 LFDEERYAE-AQ--------------------------HDADNPF---------ETEQLVICSLDFLRRNKQRLEQALAA 271 (956)
T ss_pred EEcCcchhh-hc--------------------------ccccCcc---------ccCcEEEEEHHHhhhCHHHHHHHhhc
Confidence 665432100 00 0000111 13579999999998643 557778
Q ss_pred CccEEEEeCCcccCCc---chHHHHHHHhc--ccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhcc--cc
Q 044798 557 EWGYAVLDEGHRIRNP---NAEISLVCKQL--QTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAV--PI 629 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~---~Sk~skalk~L--~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~--pI 629 (1231)
.|++||+||||+++|. .|..++++..+ +++++++|||||+||++.|+|++++||+|+.|+++..|...... |+
T Consensus 272 ~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~ 351 (956)
T PRK04914 272 EWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPV 351 (956)
T ss_pred CCCEEEEechhhhccCCCCcCHHHHHHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHH
Confidence 9999999999999953 46678888888 67899999999999999999999999999999999999865432 22
Q ss_pred -------ccCCCCCCChhhHh---------------------HHHH-HHHHHHHHH-----hHHHHHHHHHHHhhcCCCc
Q 044798 630 -------TVGGYANASPLQVS---------------------TAYR-CAVVLRDLI-----MPYLLRRMKADVNAQLPKK 675 (1231)
Q Consensus 630 -------~~g~~~~as~~~v~---------------------~~~k-~~~~Lr~lI-----~p~~LRRtK~dV~~dLP~K 675 (1231)
..+........... .... ....++.++ ..+|+|+++.+|. .+|.+
T Consensus 352 a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~-~fp~R 430 (956)
T PRK04914 352 ADAVQALLAGEKLSDDALNALGELLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVK-GFPKR 430 (956)
T ss_pred HHHHHHHhcCCcCCHHHHHHHHHHhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhc-CCCcC
Confidence 11111000000000 0000 111122222 2578899999985 68999
Q ss_pred eEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHH
Q 044798 676 TEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVL 755 (1231)
Q Consensus 676 ~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLL 755 (1231)
..+.+.+++.+. |...+.... ...++. +.+|..+..... ..-.....++|+..|.++|
T Consensus 431 ~~~~~~l~~~~~----y~~~~~~~~--------------~~~~~~-~l~pe~~~~~~~---~~~~~~~~d~Ki~~L~~~L 488 (956)
T PRK04914 431 ELHPIPLPLPEQ----YQTAIKVSL--------------EARARD-MLYPEQIYQEFE---DNATWWNFDPRVEWLIDFL 488 (956)
T ss_pred ceeEeecCCCHH----HHHHHHHhH--------------HHHHHh-hcCHHHHHHHHh---hhhhccccCHHHHHHHHHH
Confidence 999998888764 333221100 011111 223332221100 0011234578999999999
Q ss_pred HHHHhcCCeEEEEeccHHHHHHHHHHH-HHcCCcEEEEeCCCCHHHHHHHHHHHhCCC-CceEEEEeccccccccCCCCC
Q 044798 756 KVWKDQGHRVLLFAQTQQMLDILESFL-IASGYEYRRMDGLTPVKQRMALIDEYNNSS-DVFIFILTTKVGGLGTNLTGA 833 (1231)
Q Consensus 756 k~~~~~g~KVLVFSQ~~~~LdiLe~~L-~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~-~i~VfLlSTkvGg~GLNLt~A 833 (1231)
+... ++|+||||+++.+++.|...| ...||+++.+||+|++.+|+.+++.|++++ .+.| |++|++||+|+||+.|
T Consensus 489 ~~~~--~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~V-LIsTdvgseGlNlq~a 565 (956)
T PRK04914 489 KSHR--SEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQV-LLCSEIGSEGRNFQFA 565 (956)
T ss_pred HhcC--CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccE-EEechhhccCCCcccc
Confidence 8654 779999999999999999999 467999999999999999999999999864 4555 6788999999999999
Q ss_pred CEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCcc
Q 044798 834 NRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ 898 (1231)
Q Consensus 834 nrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~d~~ 898 (1231)
++||+||+||||..++||+||+||+||+++|.||.++.+||+++.||+....|..+.+.++.+..
T Consensus 566 ~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~~~l~ife~~~~~~~ 630 (956)
T PRK04914 566 SHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTGR 630 (956)
T ss_pred cEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHhhhcCceeccCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999988887654
No 18
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.4e-53 Score=521.72 Aligned_cols=438 Identities=29% Similarity=0.432 Sum_probs=361.5
Q ss_pred HHHHHHHHHHHHHH-cCCCcEEEEeCCCchHHHHHHHHHHHHhhcC-------CCCcEEEEeCCcchHHHHHHHHHHcC-
Q 044798 404 DYQKVGVQWLWELH-CQRAGGIIGDEMGLGKTIQVLSFLGALHFSN-------MYKPSIVVCPVTLLRQWKREAEKWYP- 474 (1231)
Q Consensus 404 pyQkegV~wL~el~-~~~~GgILADEMGLGKTIqaIA~L~~L~~s~-------~~kpvLIV~P~sLl~QW~~E~~kw~p- 474 (1231)
.+|+.+-.|+.... ..-.|||++|+||+|||+++|+++....... ..+.+|||||.+++.||..|+.+..+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~~~qW~~elek~~~~ 214 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSLLTQWKTELEKVTEE 214 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHHHHHHHHHHhccCCc
Confidence 44444444433322 2346999999999999999999987764432 45789999999999999999955553
Q ss_pred -CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhh
Q 044798 475 -SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKL 553 (1231)
Q Consensus 475 -~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L 553 (1231)
.+.+.+||| .. +. ......++||||||..+.. ..+
T Consensus 215 ~~l~v~v~~g-r~------kd-----------------------------------~~el~~~dVVltTy~il~~--~~l 250 (674)
T KOG1001|consen 215 DKLSIYVYHG-RT------KD-----------------------------------KSELNSYDVVLTTYDILKN--SPL 250 (674)
T ss_pred cceEEEEecc-cc------cc-----------------------------------cchhcCCceEEeeHHHhhc--ccc
Confidence 467778886 10 00 0012456799999999976 556
Q ss_pred hcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCC
Q 044798 554 LDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGG 633 (1231)
Q Consensus 554 ~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~ 633 (1231)
..+.|-+||+||||.|+|++++++++|..+.+.+||+|||||+||++.|||+++.|+.-..+.....|...+..|+..+.
T Consensus 251 ~~i~w~Riildea~~ikn~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~ 330 (674)
T KOG1001|consen 251 VKIKWLRIVLDEAHTIKNKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNK 330 (674)
T ss_pred cceeEEEEEeccccccCCcchHhhhhheeeccceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhh
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred CCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHH-----hhcCCCceEEEEEecCCHHHHHHHHHHHhhHHH-------
Q 044798 634 YANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADV-----NAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEV------- 701 (1231)
Q Consensus 634 ~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV-----~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~------- 701 (1231)
| .+....++-++..+++||+|..- ...|||+...+..+.++..++..|..+......
T Consensus 331 ~-----------~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~ 399 (674)
T KOG1001|consen 331 Y-----------KEGVKTLQGILKKVMLRRTKEMEVDGKPILELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYAN 399 (674)
T ss_pred H-----------HHHHHHHHHHHHHHHhcccccccccCccccccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhh
Confidence 4 23345678889999999999732 347999999999999999999999988765432
Q ss_pred -HHHhhcCcchhHHHHHHHHHhCChhhhhhhh------------------------hcCCC---C---------------
Q 044798 702 -EQILDGSRNSLYGIDVMRKICNHPDLLEREQ------------------------SCQIP---D--------------- 738 (1231)
Q Consensus 702 -~~il~~~~~~l~~i~~LRkicnHPdLl~~~~------------------------~~~~~---d--------------- 738 (1231)
..+...+...+..+.+||++|+||.++.... .|... +
T Consensus 400 ~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c 479 (674)
T KOG1001|consen 400 EGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAAALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVEC 479 (674)
T ss_pred hchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccchHHHHHHHHHhhccccccccccccceeecccchHHHHH
Confidence 2233345566777889999999999864221 11100 0
Q ss_pred ------C-------------------C----------CCCcchHHHHHHHHHHHHHhcCC-eEEEEeccHHHHHHHHHHH
Q 044798 739 ------Y-------------------G----------NPERSEKMKVVAQVLKVWKDQGH-RVLLFAQTQQMLDILESFL 782 (1231)
Q Consensus 739 ------~-------------------~----------~~~~S~Kl~~L~eLLk~~~~~g~-KVLVFSQ~~~~LdiLe~~L 782 (1231)
. . ....|.|+..+..+|........ |+|||||++.++++++..|
T Consensus 480 ~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~~~~~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l 559 (674)
T KOG1001|consen 480 LKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIINDLLPESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRL 559 (674)
T ss_pred HHhccccccCCCCcHHHHHHHHHHHhhcccccchhhhccchhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhh
Confidence 0 0 00136777778888875544444 9999999999999999999
Q ss_pred HHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcc
Q 044798 783 IASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQ 862 (1231)
Q Consensus 783 ~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk 862 (1231)
...|+.+.+++|.++...|...+..|+.++.+.|+|+|.+|||+||||+.|++||++||||||+.+.||++|+||+||++
T Consensus 560 ~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~k 639 (674)
T KOG1001|consen 560 FFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQTK 639 (674)
T ss_pred hhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcC
Q 044798 863 DVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKN 896 (1231)
Q Consensus 863 ~V~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~d 896 (1231)
+|.|+||++.+|+||+|...|..|+.+...++++
T Consensus 640 ~v~v~r~~i~dtveer~l~iq~~K~~~~~~a~~~ 673 (674)
T KOG1001|consen 640 PVKVSRFIIKDTVEERILKIQEKKREYNASAFGE 673 (674)
T ss_pred eeeeeeehhhhccHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999999999999999888764
No 19
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=100.00 E-value=6.6e-45 Score=439.76 Aligned_cols=394 Identities=33% Similarity=0.519 Sum_probs=325.9
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCC-CCcEEEEeCCcchHHHHHHHHHHcCCCeE
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM-YKPSIVVCPVTLLRQWKREAEKWYPSFHV 478 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~-~kpvLIV~P~sLl~QW~~E~~kw~p~lrV 478 (1231)
..|.|||.+|++|+......+..+|||||||+|||+|+|.|+..+..... .+|.||++|.+.+.+|..|+..|.|.+.|
T Consensus 294 g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT~~nwe~e~~~wap~~~v 373 (696)
T KOG0383|consen 294 GTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLSTIVNWEREFELWAPSFYV 373 (696)
T ss_pred ccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCccccCCCCchhccCCCccc
Confidence 67999999999999999999999999999999999999999988876544 48999999999999999999999999999
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcCCc
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEW 558 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~~w 558 (1231)
..++|........+.-.. ...++.. ........| .......++|.+++|++.......+..+.|
T Consensus 374 v~~~G~~k~r~iirepe~-----------s~ed~~~-~~~~~i~~~----~~~s~~k~~vl~~s~~~~~~~~~il~~v~w 437 (696)
T KOG0383|consen 374 VPYPGTAKSRAIIREPEF-----------SFEDSSI-KSSPKISEM----KTESSAKFHVLLPSYETIEIDQSILFSVQW 437 (696)
T ss_pred ccCCCCccchhhhhcccc-----------ccccccc-ccCCccccc----cchhhcccccCCCchhhcccCHHHHhhhhc
Confidence 999998765433222100 0000000 000001111 011234568999999999999999999999
Q ss_pred cEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCCCCCC
Q 044798 559 GYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANAS 638 (1231)
Q Consensus 559 d~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~~as 638 (1231)
..+|+||+|+++|..++.+..+......++++|||||.|||+.||+++++|+.|+.++.+..|.+.|..-
T Consensus 438 ~~livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~---------- 507 (696)
T KOG0383|consen 438 GLLIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDI---------- 507 (696)
T ss_pred ceeEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchh----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999988652
Q ss_pred hhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcC-c-chhHHHH
Q 044798 639 PLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGS-R-NSLYGID 716 (1231)
Q Consensus 639 ~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~-~-~~l~~i~ 716 (1231)
.-..+...|+.++.|+|+||.+.||...+|.|.+.++.+.|++.|..+|+.++...-- .+..+. . ..+..++
T Consensus 508 -----~~~~~~~~l~~l~~p~~lrr~k~d~l~~~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~-~l~~~~~~~s~~n~~m 581 (696)
T KOG0383|consen 508 -----SCEEQIKKLHLLLCPHMLRRLKLDVLKPMPLKTELIGRVELSPCQKKYYKKILTRNWQ-GLLAGVHQYSLLNIVM 581 (696)
T ss_pred -----hHHHHHHhhccccCchhhhhhhhhhccCCCccceeEEEEecCHHHHHHHHHHHcCChH-HHhhcchhHHHHHHHH
Confidence 2356788899999999999999999999999999999999999999999998865321 111121 1 2234567
Q ss_pred HHHHHhCChhhhhhhhhcCCCCC-----CCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEE
Q 044798 717 VMRKICNHPDLLEREQSCQIPDY-----GNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRR 791 (1231)
Q Consensus 717 ~LRkicnHPdLl~~~~~~~~~d~-----~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~r 791 (1231)
.|+|.||||+++..... ..... ...+.|+|+..|..+++.+++.||||+||+|++.|||+|+.++...| .|.|
T Consensus 582 el~K~~~hpy~~~~~e~-~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r 659 (696)
T KOG0383|consen 582 ELRKQCNHPYLSPLEEP-LEENGEYLGSALIKASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYER 659 (696)
T ss_pred HHHHhhcCcccCccccc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC-ccee
Confidence 79999999999865111 01110 12346899999999999999999999999999999999999999999 9999
Q ss_pred EeCCCCHHHHHHHHHHHhC-CCCceEEEEeccccccc
Q 044798 792 MDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLG 827 (1231)
Q Consensus 792 IdGsts~~eRq~iId~Fn~-d~~i~VfLlSTkvGg~G 827 (1231)
+||..+...|+.+|++||. +.+-++||+||++||+|
T Consensus 660 ~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 660 IDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred ccCCccchhhhhhccccCCCCccceEEEeecccccCC
Confidence 9999999999999999994 66789999999999998
No 20
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=100.00 E-value=3.7e-41 Score=379.46 Aligned_cols=274 Identities=33% Similarity=0.597 Sum_probs=221.7
Q ss_pred HHHHHHHHHHHHH---------cCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCC---CcEEEEeCCcchHHHHHHHHHH
Q 044798 405 YQKVGVQWLWELH---------CQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMY---KPSIVVCPVTLLRQWKREAEKW 472 (1231)
Q Consensus 405 yQkegV~wL~el~---------~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~---kpvLIV~P~sLl~QW~~E~~kw 472 (1231)
||+.||.||+.+. ...+|||||||||+|||+++|+++..+...... +++|||||.+++.||..||.+|
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l~~~W~~E~~~~ 80 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSLLSQWKEEIEKW 80 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccchhhhhhhhhccc
Confidence 8999999999998 778899999999999999999999988765544 3699999999999999999999
Q ss_pred c-C-CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHH---
Q 044798 473 Y-P-SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLR--- 547 (1231)
Q Consensus 473 ~-p-~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr--- 547 (1231)
+ | .+++.++++..... . ........++|+|+||+.+.
T Consensus 81 ~~~~~~~v~~~~~~~~~~----~----------------------------------~~~~~~~~~~vvi~ty~~~~~~~ 122 (299)
T PF00176_consen 81 FDPDSLRVIIYDGDSERR----R----------------------------------LSKNQLPKYDVVITTYETLRKAR 122 (299)
T ss_dssp SGT-TS-EEEESSSCHHH----H----------------------------------TTSSSCCCSSEEEEEHHHHH--T
T ss_pred cccccccccccccccccc----c----------------------------------ccccccccceeeecccccccccc
Confidence 9 4 57888887654100 0 00011245689999999999
Q ss_pred --HHHhhhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhh
Q 044798 548 --LLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEF 625 (1231)
Q Consensus 548 --~~~~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f 625 (1231)
.....+...+|++||+||+|.+||..+..+.++..+.+.+||+|||||++|++.|||++++||.|..++....|.+.|
T Consensus 123 ~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~ 202 (299)
T PF00176_consen 123 KKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRYKALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWF 202 (299)
T ss_dssp STHTTHHHHTSEEEEEEETTGGGGTTTTSHHHHHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHT
T ss_pred ccccccccccccceeEEEecccccccccccccccccccccceEEeeccccccccccccccchheeeccccccchhhhhhh
Confidence 667778888999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHH--H
Q 044798 626 AVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVE--Q 703 (1231)
Q Consensus 626 ~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~--~ 703 (1231)
..+ .....+.....|+.++.++++||++.++...||+..+.++.|+|++.|+.+|+.+....... .
T Consensus 203 ~~~------------~~~~~~~~~~~L~~~l~~~~~r~~~~d~~~~lp~~~~~~~~~~ls~~q~~~Y~~~~~~~~~~~~~ 270 (299)
T PF00176_consen 203 YRP------------DKENSYENIERLRELLSEFMIRRTKKDVEKELPPKIEHVINVELSPEQRELYNELLKEARENLKQ 270 (299)
T ss_dssp HHH------------HHTHHHHHHHHHHHHHCCCEECHCGGGGCTTSTCEEEEEEEEGG-HHHHHHHHHHHHHHGGCCTT
T ss_pred hhh------------ccccccccccccccccchhhhhhhcccccccCCceEEEEEEeCCCHHHHHHHHHHHHHHHHHHHh
Confidence 765 34556778889999999999999999998899999999999999999999999876543211 1
Q ss_pred ----HhhcCcchhHHHHHHHHHhCChhhh
Q 044798 704 ----ILDGSRNSLYGIDVMRKICNHPDLL 728 (1231)
Q Consensus 704 ----il~~~~~~l~~i~~LRkicnHPdLl 728 (1231)
........+..+..||++|+||.|+
T Consensus 271 ~~~~~~~~~~~~~~~~~~lr~~c~hp~l~ 299 (299)
T PF00176_consen 271 SSRKKSKKLSSLLQILKRLRQVCNHPYLV 299 (299)
T ss_dssp -T--TCHHHHHHHHHHHHHHHHHH-THHC
T ss_pred hcccchhhHHHHHHHHHHHHHHhCCcccC
Confidence 1112234566788999999999874
No 21
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=5.8e-38 Score=385.65 Aligned_cols=342 Identities=20% Similarity=0.334 Sum_probs=251.5
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCc-chHHHHHHHHHHc--CCC
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVT-LLRQWKREAEKWY--PSF 476 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~s-Ll~QW~~E~~kw~--p~l 476 (1231)
..|||||.++|.|++.. ....+|||..+||+|||+++|+++..+ .+++|||||.. ++.||.++|.+|+ +..
T Consensus 254 ~~LRpYQ~eAl~~~~~~-gr~r~GIIvLPtGaGKTlvai~aa~~l-----~k~tLILvps~~Lv~QW~~ef~~~~~l~~~ 327 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVTAACTV-----KKSCLVLCTSAVSVEQWKQQFKMWSTIDDS 327 (732)
T ss_pred CCcCHHHHHHHHHHHhc-CCCCCcEEEeCCCCChHHHHHHHHHHh-----CCCEEEEeCcHHHHHHHHHHHHHhcCCCCc
Confidence 57999999999998641 122589999999999999999888765 37899999975 5899999999996 345
Q ss_pred eEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHH--------
Q 044798 477 HVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRL-------- 548 (1231)
Q Consensus 477 rV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~-------- 548 (1231)
.+..+++..... ......|+|+||+++..
T Consensus 328 ~I~~~tg~~k~~-------------------------------------------~~~~~~VvVtTYq~l~~~~~r~~~~ 364 (732)
T TIGR00603 328 QICRFTSDAKER-------------------------------------------FHGEAGVVVSTYSMVAHTGKRSYES 364 (732)
T ss_pred eEEEEecCcccc-------------------------------------------cccCCcEEEEEHHHhhcccccchhh
Confidence 555555432100 01235799999999853
Q ss_pred --HHhhhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhh-cCCCCCChhHHHHhh
Q 044798 549 --LGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFV-FPGKLGVLPVFEAEF 625 (1231)
Q Consensus 549 --~~~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL-~P~~lg~~~~F~~~f 625 (1231)
..+.|....|++||+||||++. .....+++..+.+.+||+|||||++++ +.+..+.|+ .|..+.. .
T Consensus 365 ~~~l~~l~~~~~gLII~DEvH~lp--A~~fr~il~~l~a~~RLGLTATP~ReD--~~~~~L~~LiGP~vye~------~- 433 (732)
T TIGR00603 365 EKVMEWLTNREWGLILLDEVHVVP--AAMFRRVLTIVQAHCKLGLTATLVRED--DKITDLNFLIGPKLYEA------N- 433 (732)
T ss_pred hHHHHHhccccCCEEEEEcccccc--HHHHHHHHHhcCcCcEEEEeecCcccC--CchhhhhhhcCCeeeec------C-
Confidence 2344556789999999999994 344555777889999999999999876 334444443 2321110 0
Q ss_pred ccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHh
Q 044798 626 AVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL 705 (1231)
Q Consensus 626 ~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il 705 (1231)
+.+++. ...|.+.....++|+|++.....| +....-
T Consensus 434 --------------------------~~eLi~-----------~G~LA~~~~~ev~v~~t~~~~~~y---l~~~~~---- 469 (732)
T TIGR00603 434 --------------------------WMELQK-----------KGFIANVQCAEVWCPMTPEFYREY---LRENSR---- 469 (732)
T ss_pred --------------------------HHHHHh-----------CCccccceEEEEEecCCHHHHHHH---HHhcch----
Confidence 111111 123556666789999998754444 322110
Q ss_pred hcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc
Q 044798 706 DGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS 785 (1231)
Q Consensus 706 ~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~ 785 (1231)
...+..+. ...|+.++..+++.+...++|+||||++...++.+...|
T Consensus 470 ----------~k~~l~~~--------------------np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L--- 516 (732)
T TIGR00603 470 ----------KRMLLYVM--------------------NPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKL--- 516 (732)
T ss_pred ----------hhhHHhhh--------------------ChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHc---
Confidence 00000111 236888998998876667899999999999888887776
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCC-CcchHHHHHHhHHhhCCccc-
Q 044798 786 GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDW-NPSTDVQARERAWRIGQKQD- 863 (1231)
Q Consensus 786 Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~W-NPs~d~QAigRa~RiGQkk~- 863 (1231)
+. ..|+|.|+..+|..+++.|+.++.+.+ |++|+||++||||+.|+.||++++++ ++..++||+||+.|.+..+.
T Consensus 517 ~~--~~I~G~ts~~ER~~il~~Fr~~~~i~v-Lv~SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~~ 593 (732)
T TIGR00603 517 GK--PFIYGPTSQQERMQILQNFQHNPKVNT-IFLSKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSDA 593 (732)
T ss_pred CC--ceEECCCCHHHHHHHHHHHHhCCCccE-EEEecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCcc
Confidence 33 459999999999999999997766666 45569999999999999999999986 99999999999999987653
Q ss_pred ----EEEEEEEeCCCHHHHHHH
Q 044798 864 ----VTVYRLITRGTIEEKVYH 881 (1231)
Q Consensus 864 ----V~VYRLit~gTIEEkIy~ 881 (1231)
.++|.|++.+|.|+..-.
T Consensus 594 ~~~~A~fY~lVs~dT~E~~~s~ 615 (732)
T TIGR00603 594 EEYNAFFYSLVSKDTQEMYYST 615 (732)
T ss_pred ccccceEEEEecCCchHHHHHH
Confidence 799999999999987643
No 22
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=3e-34 Score=365.71 Aligned_cols=436 Identities=15% Similarity=0.168 Sum_probs=283.2
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcC--CCe
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYP--SFH 477 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p--~lr 477 (1231)
.+++||.+.+..+.+ .++|++++||+|||++++.++..+. ....+++|||||. .++.||..+|.+++. ...
T Consensus 15 ~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l-~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 88 (773)
T PRK13766 15 EARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERL-HKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEK 88 (773)
T ss_pred CccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHH-HhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCce
Confidence 679999999887743 3899999999999999888877665 3456899999997 899999999998863 347
Q ss_pred EEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHH--hhhhc
Q 044798 478 VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLG--EKLLD 555 (1231)
Q Consensus 478 V~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~--~~L~~ 555 (1231)
+.+++|...... + ......++|+|+||+.+.... ..+..
T Consensus 89 v~~~~g~~~~~~-r--------------------------------------~~~~~~~~iiv~T~~~l~~~l~~~~~~~ 129 (773)
T PRK13766 89 IVVFTGEVSPEK-R--------------------------------------AELWEKAKVIVATPQVIENDLIAGRISL 129 (773)
T ss_pred EEEEeCCCCHHH-H--------------------------------------HHHHhCCCEEEECHHHHHHHHHcCCCCh
Confidence 777766432210 0 001134689999999997654 23444
Q ss_pred CCccEEEEeCCcccCCcchHHHHHHHhc---ccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccC
Q 044798 556 VEWGYAVLDEGHRIRNPNAEISLVCKQL---QTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVG 632 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN~~Sk~skalk~L---~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g 632 (1231)
..|++||+||||++.+..+..+.+-..+ +..++++|||||.++ ...+..++..|+...+...+.|...+...+...
T Consensus 130 ~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~~il~lTaTP~~~-~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~ 208 (773)
T PRK13766 130 EDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNPLVLGLTASPGSD-EEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKV 208 (773)
T ss_pred hhCcEEEEECCccccccccHHHHHHHHHhcCCCCEEEEEEcCCCCC-HHHHHHHHHhCCceEEEEcCCCChhHHhhhccc
Confidence 5799999999999987665544333322 345689999999876 455666666554433332222222111110000
Q ss_pred CCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhc-CCCceEEEEEecCCHHHHHHHHHHHhhHH-----------
Q 044798 633 GYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQ-LPKKTEHVLFCSLTEEQRAVYRAFLASSE----------- 700 (1231)
Q Consensus 633 ~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~d-LP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~----------- 700 (1231)
. .... ..........++.+|..++.++.+...... +++....+....+...+..++..+.....
T Consensus 209 ~---v~~~-~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 284 (773)
T PRK13766 209 K---IEWV-RVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAE 284 (773)
T ss_pred e---eEEE-EeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHH
Confidence 0 0000 001122345677788888877776644322 22222112222233333333332211000
Q ss_pred H------HHHhhc-Ccchh-HHHHHHHH-------------HhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHH
Q 044798 701 V------EQILDG-SRNSL-YGIDVMRK-------------ICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWK 759 (1231)
Q Consensus 701 ~------~~il~~-~~~~l-~~i~~LRk-------------icnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~ 759 (1231)
+ ...+.. ....+ ..+..++. +..++......... .......+|+..|.++|..+.
T Consensus 285 ~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~pK~~~L~~il~~~~ 360 (773)
T PRK13766 285 AMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKA----KELDIEHPKLEKLREIVKEQL 360 (773)
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHH----HhcccCChHHHHHHHHHHHHH
Confidence 0 000000 00000 00111111 11111111000000 001234689999999999876
Q ss_pred --hcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCC--------CCHHHHHHHHHHHhCCCCceEEEEeccccccccC
Q 044798 760 --DQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGL--------TPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTN 829 (1231)
Q Consensus 760 --~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGs--------ts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLN 829 (1231)
..+.|+||||++..+++.|..+|...|+.+..++|. ++..+|..++++|+++ .+.| |++|.++++|+|
T Consensus 361 ~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g-~~~v-LvaT~~~~eGld 438 (773)
T PRK13766 361 GKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAG-EFNV-LVSTSVAEEGLD 438 (773)
T ss_pred hcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccccccccCCCCHHHHHHHHHHHHcC-CCCE-EEECChhhcCCC
Confidence 468899999999999999999999999999999997 8889999999999987 4554 778899999999
Q ss_pred CCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhc
Q 044798 830 LTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895 (1231)
Q Consensus 830 Lt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~ 895 (1231)
++.+++||+|||+|||..++|++||++|.|+ +.||.|++.||+||.+|.....|...+...|.
T Consensus 439 i~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~---~~v~~l~~~~t~ee~~y~~~~~ke~~~~~~l~ 501 (773)
T PRK13766 439 IPSVDLVIFYEPVPSEIRSIQRKGRTGRQEE---GRVVVLIAKGTRDEAYYWSSRRKEKKMKEELK 501 (773)
T ss_pred cccCCEEEEeCCCCCHHHHHHHhcccCcCCC---CEEEEEEeCCChHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999998888888765 77899999999999999999888887755443
No 23
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=100.00 E-value=4e-33 Score=343.83 Aligned_cols=222 Identities=25% Similarity=0.323 Sum_probs=178.0
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHhh------------c----CCCCcEEEEeCCcchHHHHHHHHHHcCCC-eEEEEec
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALHF------------S----NMYKPSIVVCPVTLLRQWKREAEKWYPSF-HVELLHD 483 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~~------------s----~~~kpvLIV~P~sLl~QW~~E~~kw~p~l-rV~il~g 483 (1231)
..++++||||+|||...++....-.. . ...|.+|||||.+++.||..||+++++.+ +|+.|.|
T Consensus 375 ~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~aIl~QW~~EI~kH~~~~lKv~~Y~G 454 (1394)
T KOG0298|consen 375 KRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNAILMQWFEEIHKHISSLLKVLLYFG 454 (1394)
T ss_pred cceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHHHHHHHHHHHHHhccccceEEEEec
Confidence 34699999999999998876543211 0 12378999999999999999999999876 8888887
Q ss_pred ccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHH-------------
Q 044798 484 SAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLG------------- 550 (1231)
Q Consensus 484 s~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~------------- 550 (1231)
..+...... ..-..++||+|||..|+...
T Consensus 455 irk~~~~~~--------------------------------------~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR 496 (1394)
T KOG0298|consen 455 IRKTFWLSP--------------------------------------FELLQYDIVLTTYDILRNELYHTEDFGSDRQLR 496 (1394)
T ss_pred hhhhcccCc--------------------------------------hhhhccCEEEeehHHHHhHhhcccccCChhhhh
Confidence 654211000 11245799999999998643
Q ss_pred ---------hhhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHH
Q 044798 551 ---------EKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVF 621 (1231)
Q Consensus 551 ---------~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F 621 (1231)
..|..+.|.+|+||||+.+....|..++++..|.+.+||+.||||+|+ +.+||.|+.||.-.+|+....|
T Consensus 497 ~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS~~a~M~~rL~~in~W~VTGTPiq~-Iddl~~Ll~fLk~~Pf~~~~~~ 575 (1394)
T KOG0298|consen 497 HQSRYMRPNSPLLMVNWWRICLDEAQMVESSSSAAAEMVRRLHAINRWCVTGTPIQK-IDDLFPLLEFLKLPPFCRPQDF 575 (1394)
T ss_pred cccCCCCCCCchHHHHHHHHhhhHHHhhcchHHHHHHHHHHhhhhceeeecCCchhh-hhhhHHHHHHhcCCCCCChHHH
Confidence 126778899999999999999999999999999999999999999999 9999999999998889999999
Q ss_pred HHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhh--cCCCceEEEEEecCCHHHHHHHHHH
Q 044798 622 EAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNA--QLPKKTEHVLFCSLTEEQRAVYRAF 695 (1231)
Q Consensus 622 ~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~--dLP~K~e~vv~~~Lt~~Qr~lY~~~ 695 (1231)
.+.+..++... .....+.+++...+.|+.+.+|.. .+||..+.+.+..+++.+-.+|+..
T Consensus 576 iq~v~~~~~~r--------------a~~~~~~dl~~q~l~R~~k~~v~~el~~ppq~e~~h~~~~sa~~s~v~r~~ 637 (1394)
T KOG0298|consen 576 IQTVDKAYQLR--------------AKCEPLLDLFKQLLWRTFKSKVEHELGLPPQTEVVHRLELSAVESHVYREE 637 (1394)
T ss_pred HHHHHHHHHHH--------------hhhhhHHHHHHhhhhhhhhHHHHHHhCCCchHHHHHHHHhcchhhhhhHHH
Confidence 88776654422 223457788888999999999876 5899988888888888888777643
No 24
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.3e-27 Score=275.60 Aligned_cols=436 Identities=17% Similarity=0.185 Sum_probs=270.0
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC-CcchHHHHHHHHHHc--CCCe
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP-VTLLRQWKREAEKWY--PSFH 477 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P-~sLl~QW~~E~~kw~--p~lr 477 (1231)
.-+.||..-+.-.+. .+++++-++|||||+.|+.+++..+.... +.+|+++| ..|+.|...-|.+.+ |...
T Consensus 15 e~R~YQ~~i~a~al~-----~NtLvvlPTGLGKT~IA~~V~~~~l~~~~-~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 15 EPRLYQLNIAAKALF-----KNTLVVLPTGLGKTFIAAMVIANRLRWFG-GKVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred cHHHHHHHHHHHHhh-----cCeEEEecCCccHHHHHHHHHHHHHHhcC-CeEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 458899887765533 48999999999999999888876654443 38999999 599999999999887 5677
Q ss_pred EEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHh--hhhc
Q 044798 478 VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGE--KLLD 555 (1231)
Q Consensus 478 V~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~--~L~~ 555 (1231)
+..+.|...... + ...| ....|++.|++.+.++.. .+..
T Consensus 89 i~~ltGev~p~~--R----------------------------~~~w---------~~~kVfvaTPQvveNDl~~Grid~ 129 (542)
T COG1111 89 IAALTGEVRPEE--R----------------------------EELW---------AKKKVFVATPQVVENDLKAGRIDL 129 (542)
T ss_pred eeeecCCCChHH--H----------------------------HHHH---------hhCCEEEeccHHHHhHHhcCccCh
Confidence 778877543211 0 1112 334799999999988764 3555
Q ss_pred CCccEEEEeCCcccCCcchHHHHHHHhc---ccccEEEecccCccCChHHHHHhhhhhcCCCCCCh----hHHHHhhccc
Q 044798 556 VEWGYAVLDEGHRIRNPNAEISLVCKQL---QTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVL----PVFEAEFAVP 628 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN~~Sk~skalk~L---~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~----~~F~~~f~~p 628 (1231)
-++.++|+||||+.-...+-+.-+=..+ +..+.+.|||||= ++...+-..++-|..+..... +... .|...
T Consensus 130 ~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~~ilgLTASPG-s~~ekI~eV~~nLgIe~vevrTE~d~DV~-~Yv~~ 207 (542)
T COG1111 130 DDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNPLILGLTASPG-SDLEKIQEVVENLGIEKVEVRTEEDPDVR-PYVKK 207 (542)
T ss_pred HHceEEEechhhhccCcchHHHHHHHHHHhccCceEEEEecCCC-CCHHHHHHHHHhCCcceEEEecCCCccHH-Hhhcc
Confidence 6789999999999987766554433333 3346688999993 455555555555544332110 0111 01111
Q ss_pred cccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhc-------CCCceEEE---EEecC-CHHHHHHHHHHHh
Q 044798 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQ-------LPKKTEHV---LFCSL-TEEQRAVYRAFLA 697 (1231)
Q Consensus 629 I~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~d-------LP~K~e~v---v~~~L-t~~Qr~lY~~~l~ 697 (1231)
+...-..-.-+ .........|+.++.+. ++.--... ++.+.-.. ....+ .......|+.+.-
T Consensus 208 ~kve~ikV~lp---~e~~~ir~~l~~~l~~~----Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~ 280 (542)
T COG1111 208 IKVEWIKVDLP---EEIKEIRDLLRDALKPR----LKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSV 280 (542)
T ss_pred ceeEEEeccCc---HHHHHHHHHHHHHHHHH----HHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHH
Confidence 10000000000 01111222333333332 22111000 00000000 00000 0001222322211
Q ss_pred hHH------HHHHhhc--CcchhHHHH------------HHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHH
Q 044798 698 SSE------VEQILDG--SRNSLYGID------------VMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKV 757 (1231)
Q Consensus 698 s~~------~~~il~~--~~~~l~~i~------------~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~ 757 (1231)
... ...++.. -...+.-+. ..+.+..+|+....-..+... ....-..+||..|.++|+.
T Consensus 281 ~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~-~~~~v~HPKl~~l~eilke 359 (542)
T COG1111 281 LAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRA-DESGVEHPKLEKLREILKE 359 (542)
T ss_pred HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHh-ccccCCCccHHHHHHHHHH
Confidence 110 0011110 000000111 122222222221110001000 1122346899999999998
Q ss_pred HH--hcCCeEEEEeccHHHHHHHHHHHHHcCCcEE-EEeC--------CCCHHHHHHHHHHHhCCCCceEEEEecccccc
Q 044798 758 WK--DQGHRVLLFAQTQQMLDILESFLIASGYEYR-RMDG--------LTPVKQRMALIDEYNNSSDVFIFILTTKVGGL 826 (1231)
Q Consensus 758 ~~--~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~-rIdG--------sts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~ 826 (1231)
.. ..+.++|||++|+.+++.|..+|...|+... ++-| +|++++...+|++|+.+ .+.| |++|.+|.+
T Consensus 360 ~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~G-e~nV-LVaTSVgEE 437 (542)
T COG1111 360 QLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKG-EYNV-LVATSVGEE 437 (542)
T ss_pred HHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccccccccccCHHHHHHHHHHHhcC-CceE-EEEcccccc
Confidence 86 5578999999999999999999999988775 6666 48999999999999998 4555 889999999
Q ss_pred ccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcC
Q 044798 827 GTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKN 896 (1231)
Q Consensus 827 GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~d 896 (1231)
|||++.++.||+|||--+|-..+||+||++|. +.=.||-|+++||-||.-|.....|..-+...+.+
T Consensus 438 GLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~---r~Grv~vLvt~gtrdeayy~~s~rke~~m~e~i~~ 504 (542)
T COG1111 438 GLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK---RKGRVVVLVTEGTRDEAYYYSSRRKEQKMIESIRG 504 (542)
T ss_pred cCCCCcccEEEEecCCcHHHHHHHhhCccccC---CCCeEEEEEecCchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999983 77788889999999999999999998887766653
No 25
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=2.7e-27 Score=287.72 Aligned_cols=337 Identities=13% Similarity=0.160 Sum_probs=230.2
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHc--CCC
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWY--PSF 476 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~--p~l 476 (1231)
..|+|||.++|.-++ .+..||+...+|+|||+.++.++..+.. ....++|||||. .|+.||.++|.+|. +..
T Consensus 113 ~~~r~~Q~~av~~~l----~~~~~il~apTGsGKT~i~~~l~~~~~~-~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~ 187 (501)
T PHA02558 113 IEPHWYQYDAVYEGL----KNNRRLLNLPTSAGKSLIQYLLSRYYLE-NYEGKVLIIVPTTSLVTQMIDDFVDYRLFPRE 187 (501)
T ss_pred CCCCHHHHHHHHHHH----hcCceEEEeCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECcHHHHHHHHHHHHHhcccccc
Confidence 479999999996553 3466899999999999987665443332 233489999996 89999999999976 333
Q ss_pred eEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcC
Q 044798 477 HVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDV 556 (1231)
Q Consensus 477 rV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~ 556 (1231)
.+..+.++... .....|+|+||+++......+. .
T Consensus 188 ~~~~i~~g~~~---------------------------------------------~~~~~I~VaT~qsl~~~~~~~~-~ 221 (501)
T PHA02558 188 AMHKIYSGTAK---------------------------------------------DTDAPIVVSTWQSAVKQPKEWF-D 221 (501)
T ss_pred ceeEEecCccc---------------------------------------------CCCCCEEEeeHHHHhhchhhhc-c
Confidence 33222221100 0224799999999876543322 3
Q ss_pred CccEEEEeCCcccCCcchHHHHHHHhc-ccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCCC
Q 044798 557 EWGYAVLDEGHRIRNPNAEISLVCKQL-QTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYA 635 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~~Sk~skalk~L-~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~ 635 (1231)
.|++||+||||++... .....+..+ .+.++++|||||..... ..+.++.++.|-... +.
T Consensus 222 ~~~~iIvDEaH~~~~~--~~~~il~~~~~~~~~lGLTATp~~~~~-~~~~~~~~fG~i~~~------------v~----- 281 (501)
T PHA02558 222 QFGMVIVDECHLFTGK--SLTSIITKLDNCKFKFGLTGSLRDGKA-NILQYVGLFGDIFKP------------VT----- 281 (501)
T ss_pred ccCEEEEEchhcccch--hHHHHHHhhhccceEEEEeccCCCccc-cHHHHHHhhCCceEE------------ec-----
Confidence 7899999999999753 344556666 57789999999954321 122222221110000 00
Q ss_pred CCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchhHHH
Q 044798 636 NASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGI 715 (1231)
Q Consensus 636 ~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~i 715 (1231)
..+++. ...+.+.....+++..++.....+. . ....
T Consensus 282 ----------------~~~li~-----------~g~l~~~~~~~v~~~~~~~~~~~~~----~-----------~~~~-- 317 (501)
T PHA02558 282 ----------------TSQLME-----------EGQVTDLKINSIFLRYPDEDRVKLK----G-----------EDYQ-- 317 (501)
T ss_pred ----------------HHHHHh-----------CCCcCCceEEEEeccCCHHHhhhhc----c-----------cchH--
Confidence 001110 0112223334445555543211110 0 0000
Q ss_pred HHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCC
Q 044798 716 DVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGL 795 (1231)
Q Consensus 716 ~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGs 795 (1231)
..+..+++ ...+...+..++..+...+.++|||+..+..++.|...|...|+++..++|.
T Consensus 318 ~~~~~l~~--------------------~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~ 377 (501)
T PHA02558 318 EEIKYITS--------------------HTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGE 377 (501)
T ss_pred HHHHHHhc--------------------cHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 01111222 2345566777777777778999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCccc-EEEEEEEeC
Q 044798 796 TPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQD-VTVYRLITR 872 (1231)
Q Consensus 796 ts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~-V~VYRLit~ 872 (1231)
++..+|..+++.|+++ ...|+|+|+++.++|+|++.++.||+++|+-+...+.|++||++|.|..|. +.||.++-.
T Consensus 378 ~~~~eR~~i~~~~~~~-~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD~ 454 (501)
T PHA02558 378 VDTEDRNEMKKIAEGG-KGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKHGSKSIATVWDIIDD 454 (501)
T ss_pred CCHHHHHHHHHHHhCC-CCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCCCCCceEEEEEeecc
Confidence 9999999999999876 556767777999999999999999999999999999999999999988775 999999863
No 26
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.96 E-value=4.1e-27 Score=281.60 Aligned_cols=364 Identities=22% Similarity=0.305 Sum_probs=265.6
Q ss_pred hhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCC
Q 044798 398 IFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSF 476 (1231)
Q Consensus 398 i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~l 476 (1231)
....|+|||.+++.-++........||+...+|.|||+.++.++..+. .++|||||. .++.||...+.+++...
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~-----~~~Lvlv~~~~L~~Qw~~~~~~~~~~~ 107 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELK-----RSTLVLVPTKELLDQWAEALKKFLLLN 107 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhc-----CCEEEEECcHHHHHHHHHHHHHhcCCc
Confidence 344799999999977766544478899999999999999998888764 349999995 88999998888877443
Q ss_pred -eEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHH--Hhhh
Q 044798 477 -HVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLL--GEKL 553 (1231)
Q Consensus 477 -rV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~--~~~L 553 (1231)
.+-.+.+.... ... ..|.|.||+++... ...+
T Consensus 108 ~~~g~~~~~~~~--------------------------------------------~~~-~~i~vat~qtl~~~~~l~~~ 142 (442)
T COG1061 108 DEIGIYGGGEKE--------------------------------------------LEP-AKVTVATVQTLARRQLLDEF 142 (442)
T ss_pred cccceecCceec--------------------------------------------cCC-CcEEEEEhHHHhhhhhhhhh
Confidence 22233221110 001 36999999999875 4555
Q ss_pred hcCCccEEEEeCCcccCCcchHHHHHHHhccccc-EEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccC
Q 044798 554 LDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVH-RIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVG 632 (1231)
Q Consensus 554 ~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~-RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g 632 (1231)
....|++||+||+|++-.+... .....+...+ ||.|||||.......+..+++++.|-.+.
T Consensus 143 ~~~~~~liI~DE~Hh~~a~~~~--~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~---------------- 204 (442)
T COG1061 143 LGNEFGLIIFDEVHHLPAPSYR--RILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYE---------------- 204 (442)
T ss_pred cccccCEEEEEccccCCcHHHH--HHHHhhhcccceeeeccCceeecCCchhHHHHhcCCeEee----------------
Confidence 5668999999999999654433 3444455556 99999999865544444444444321111
Q ss_pred CCCCCChhhHhHHHHHHHHHHHHHhHHHHHHH-HHHHh-hcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcc
Q 044798 633 GYANASPLQVSTAYRCAVVLRDLIMPYLLRRM-KADVN-AQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRN 710 (1231)
Q Consensus 633 ~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRt-K~dV~-~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~ 710 (1231)
.. +..+. ..|.|.....+++.++......|..+...........+.
T Consensus 205 ------------------------------~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~-- 252 (442)
T COG1061 205 ------------------------------VSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGT-- 252 (442)
T ss_pred ------------------------------cCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhh--
Confidence 11 11122 357788888999999999998888665432111000000
Q ss_pred hhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEE
Q 044798 711 SLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYR 790 (1231)
Q Consensus 711 ~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~ 790 (1231)
.......+.++ .....|+..+..++.... .+.+++||+.+....+.|...+...|+ +.
T Consensus 253 -~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~-~~~~~lif~~~~~~a~~i~~~~~~~~~-~~ 310 (442)
T COG1061 253 -LRAENEARRIA-------------------IASERKIAAVRGLLLKHA-RGDKTLIFASDVEHAYEIAKLFLAPGI-VE 310 (442)
T ss_pred -hhHHHHHHHHh-------------------hccHHHHHHHHHHHHHhc-CCCcEEEEeccHHHHHHHHHHhcCCCc-eE
Confidence 11111112222 123567777888887665 788999999999999999999998888 99
Q ss_pred EEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHh-hCCccc--EEEE
Q 044798 791 RMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWR-IGQKQD--VTVY 867 (1231)
Q Consensus 791 rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~R-iGQkk~--V~VY 867 (1231)
.++|.++..+|..+++.|..+. ..+|++++++.+|+|++.|+.+|+..|.=++..+.|++||+.| ...+.. +..|
T Consensus 311 ~it~~t~~~eR~~il~~fr~g~--~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~ 388 (442)
T COG1061 311 AITGETPKEEREAILERFRTGG--IKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRLGRGLRPAEGKEDTLALDY 388 (442)
T ss_pred EEECCCCHHHHHHHHHHHHcCC--CCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHhhhhccCCCCCCceEEEEE
Confidence 9999999999999999999975 5558899999999999999999999999999999999999999 444444 8888
Q ss_pred EEEeCCCHHHHHHHHHHH
Q 044798 868 RLITRGTIEEKVYHRQIY 885 (1231)
Q Consensus 868 RLit~gTIEEkIy~rQ~~ 885 (1231)
-++..++.+..+......
T Consensus 389 ~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 389 SLVPDDLGEEDIARRRRL 406 (442)
T ss_pred EeecCcccccchhhhhhh
Confidence 888899988888776665
No 27
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=1.7e-26 Score=272.80 Aligned_cols=310 Identities=20% Similarity=0.217 Sum_probs=219.6
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHH-HHHHHHhh------cCCCCcEEEEeCC-cchHHHHHHHHHH
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVL-SFLGALHF------SNMYKPSIVVCPV-TLLRQWKREAEKW 472 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaI-A~L~~L~~------s~~~kpvLIV~P~-sLl~QW~~E~~kw 472 (1231)
.+.|.|..+...+ ..++++|..+++|+|||+.-+ -.|..+.. .+....+||++|+ .|..|...++..+
T Consensus 113 ~PtpIQaq~wp~~----l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 113 KPTPIQAQGWPIA----LSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCchhhhccccee----ccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 3567776665444 678999999999999998843 33333332 2223459999996 8888999999999
Q ss_pred cCCCe--EEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHH
Q 044798 473 YPSFH--VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLG 550 (1231)
Q Consensus 473 ~p~lr--V~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~ 550 (1231)
...+. ..+++|..... .+.+.+..+.+|+|+|++.+..+.
T Consensus 189 ~~~~~~~~~cvyGG~~~~--------------------------------------~Q~~~l~~gvdiviaTPGRl~d~l 230 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKG--------------------------------------PQLRDLERGVDVVIATPGRLIDLL 230 (519)
T ss_pred cCCCCccEEEEeCCCCcc--------------------------------------HHHHHHhcCCcEEEeCChHHHHHH
Confidence 86654 55555544321 112234567899999999998877
Q ss_pred hh--hhcCCccEEEEeCCcccCCcc--hHHHHHHHhccccc--EEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHh
Q 044798 551 EK--LLDVEWGYAVLDEGHRIRNPN--AEISLVCKQLQTVH--RIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAE 624 (1231)
Q Consensus 551 ~~--L~~~~wd~VILDEAH~IKN~~--Sk~skalk~L~t~~--RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~ 624 (1231)
+. +...+..|+|||||++|...+ .++-+.+.++..+. -++-|+|
T Consensus 231 e~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~rQtlm~saT------------------------------ 280 (519)
T KOG0331|consen 231 EEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDRQTLMFSAT------------------------------ 280 (519)
T ss_pred HcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcccEEEEeee------------------------------
Confidence 64 445578899999999997544 45555555552222 2334444
Q ss_pred hccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHH
Q 044798 625 FAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQI 704 (1231)
Q Consensus 625 f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~i 704 (1231)
.+.+.+.+-..|+.... ...
T Consensus 281 -----------------------------------------------------------wp~~v~~lA~~fl~~~~-~i~ 300 (519)
T KOG0331|consen 281 -----------------------------------------------------------WPKEVRQLAEDFLNNPI-QIN 300 (519)
T ss_pred -----------------------------------------------------------ccHHHHHHHHHHhcCce-EEE
Confidence 22222222222221100 000
Q ss_pred hhc--CcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHH
Q 044798 705 LDG--SRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWK-DQGHRVLLFAQTQQMLDILESF 781 (1231)
Q Consensus 705 l~~--~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~-~~g~KVLVFSQ~~~~LdiLe~~ 781 (1231)
..+ .......+.++...|+ ...|...|..+|..+. ..+.|+||||+++.+.+.|...
T Consensus 301 ig~~~~~~a~~~i~qive~~~--------------------~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~ 360 (519)
T KOG0331|consen 301 VGNKKELKANHNIRQIVEVCD--------------------ETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARN 360 (519)
T ss_pred ecchhhhhhhcchhhhhhhcC--------------------HHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHH
Confidence 000 0000111223333332 3578899999999887 4456999999999999999999
Q ss_pred HHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCc
Q 044798 782 LIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQK 861 (1231)
Q Consensus 782 L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQk 861 (1231)
|...||+++.|||..++.+|..+++.|.++. +-+|++|+|+++||++..++.||+||+|-|...|+||+||++|.|++
T Consensus 361 l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~--~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGRa~~~ 438 (519)
T KOG0331|consen 361 LRRKGWPAVAIHGDKSQSERDWVLKGFREGK--SPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGRAGKK 438 (519)
T ss_pred HHhcCcceeeecccccHHHHHHHHHhcccCC--cceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccccCCCC
Confidence 9999999999999999999999999999986 66789999999999999999999999999999999999999998887
Q ss_pred ccE
Q 044798 862 QDV 864 (1231)
Q Consensus 862 k~V 864 (1231)
-..
T Consensus 439 G~A 441 (519)
T KOG0331|consen 439 GTA 441 (519)
T ss_pred ceE
Confidence 553
No 28
>PTZ00110 helicase; Provisional
Probab=99.95 E-value=1.4e-25 Score=274.91 Aligned_cols=335 Identities=21% Similarity=0.206 Sum_probs=226.4
Q ss_pred CCcccccCCcccChhhhh--------hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHH-HHHHhhc-----C
Q 044798 383 PPFVTLEGGLKIPESIFN--------NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSF-LGALHFS-----N 448 (1231)
Q Consensus 383 ~~~~~~~~~~~iP~~i~~--------~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~-L~~L~~s-----~ 448 (1231)
|..+..+..+.+|+.+.. .+.|+|..++..+ ..+...|+..++|+|||++.+.. +..+... +
T Consensus 126 p~p~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~~----l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~ 201 (545)
T PTZ00110 126 PKPVVSFEYTSFPDYILKSLKNAGFTEPTPIQVQGWPIA----LSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYG 201 (545)
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH----hcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCC
Confidence 333444455667877643 4679999998766 56789999999999999986533 3333221 1
Q ss_pred CCCcEEEEeCC-cchHHHHHHHHHHcCC--CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhh
Q 044798 449 MYKPSIVVCPV-TLLRQWKREAEKWYPS--FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWD 525 (1231)
Q Consensus 449 ~~kpvLIV~P~-sLl~QW~~E~~kw~p~--lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 525 (1231)
....+|||||. .|+.||..++.++... +++.++++.....
T Consensus 202 ~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~------------------------------------- 244 (545)
T PTZ00110 202 DGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKR------------------------------------- 244 (545)
T ss_pred CCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHH-------------------------------------
Confidence 22358999995 8889999999998754 4555554433211
Q ss_pred HHHHhhhcCCCCEEEeCHHHHHHHHhh--hhcCCccEEEEeCCcccCCcch--HHHHHHHhcccc-cEEEecccCccCCh
Q 044798 526 LLINRVLRSESGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHRIRNPNA--EISLVCKQLQTV-HRIIMTGAPIQNKL 600 (1231)
Q Consensus 526 ~~i~~~~~~~~~VvItTYe~Lr~~~~~--L~~~~wd~VILDEAH~IKN~~S--k~skalk~L~t~-~RllLTGTPiqNnl 600 (1231)
.....+..+.+|+|+|++.|...... +....+.+|||||||++.+.+. .+...+..+... ..+++|||.-
T Consensus 245 -~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p---- 319 (545)
T PTZ00110 245 -GQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWP---- 319 (545)
T ss_pred -HHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCC----
Confidence 01112335678999999998765532 2234678999999999986542 344555556443 4577899952
Q ss_pred HHHHHhhhhhcCCCCCChhHHHHhhccccc--cCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEE
Q 044798 601 SELWSLFDFVFPGKLGVLPVFEAEFAVPIT--VGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEH 678 (1231)
Q Consensus 601 ~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~--~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~ 678 (1231)
.++-.+...+.. ..|+. .+... + .......+
T Consensus 320 ~~v~~l~~~l~~-------------~~~v~i~vg~~~--------------------------------l--~~~~~i~q 352 (545)
T PTZ00110 320 KEVQSLARDLCK-------------EEPVHVNVGSLD--------------------------------L--TACHNIKQ 352 (545)
T ss_pred HHHHHHHHHHhc-------------cCCEEEEECCCc--------------------------------c--ccCCCeeE
Confidence 122111111100 00000 00000 0 00000000
Q ss_pred EEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHH
Q 044798 679 VLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVW 758 (1231)
Q Consensus 679 vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~ 758 (1231)
.+++ .....|...|..+|..+
T Consensus 353 ~~~~-----------------------------------------------------------~~~~~k~~~L~~ll~~~ 373 (545)
T PTZ00110 353 EVFV-----------------------------------------------------------VEEHEKRGKLKMLLQRI 373 (545)
T ss_pred EEEE-----------------------------------------------------------EechhHHHHHHHHHHHh
Confidence 0100 01123555666777766
Q ss_pred HhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEE
Q 044798 759 KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVII 838 (1231)
Q Consensus 759 ~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi 838 (1231)
...+.++||||+++..++.|...|...|+.+..++|.+++.+|..+++.|+++. +. +|++|+++++|||++.+++||+
T Consensus 374 ~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~-~~-ILVaTdv~~rGIDi~~v~~VI~ 451 (545)
T PTZ00110 374 MRDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGK-SP-IMIATDVASRGLDVKDVKYVIN 451 (545)
T ss_pred cccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCC-Cc-EEEEcchhhcCCCcccCCEEEE
Confidence 656789999999999999999999999999999999999999999999999874 44 5889999999999999999999
Q ss_pred cCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCC
Q 044798 839 FDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 839 ~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~g 873 (1231)
||+|+++..|+||+||++|.|.+-.+ |.|++.+
T Consensus 452 ~d~P~s~~~yvqRiGRtGR~G~~G~a--i~~~~~~ 484 (545)
T PTZ00110 452 FDFPNQIEDYVHRIGRTGRAGAKGAS--YTFLTPD 484 (545)
T ss_pred eCCCCCHHHHHHHhcccccCCCCceE--EEEECcc
Confidence 99999999999999999999986544 5556654
No 29
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.94 E-value=4e-25 Score=266.40 Aligned_cols=315 Identities=17% Similarity=0.200 Sum_probs=217.0
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCC-CCcEEEEeCC-cchHHHHHHHHHHc---C
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM-YKPSIVVCPV-TLLRQWKREAEKWY---P 474 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~-~kpvLIV~P~-sLl~QW~~E~~kw~---p 474 (1231)
..+.|+|.+++..+ ..+...|+..++|+|||.+.+..+........ ...+|||||. .|..||.+++..+. +
T Consensus 25 ~~~t~iQ~~ai~~~----l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~ 100 (460)
T PRK11776 25 TEMTPIQAQSLPAI----LAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIP 100 (460)
T ss_pred CCCCHHHHHHHHHH----hcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCC
Confidence 34789999999887 45778999999999999875544443333222 3368999995 88889999998774 5
Q ss_pred CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--
Q 044798 475 SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK-- 552 (1231)
Q Consensus 475 ~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~-- 552 (1231)
+.++..++|...... ....+....+|+|+|++.+..+...
T Consensus 101 ~~~v~~~~Gg~~~~~--------------------------------------~~~~l~~~~~IvV~Tp~rl~~~l~~~~ 142 (460)
T PRK11776 101 NIKVLTLCGGVPMGP--------------------------------------QIDSLEHGAHIIVGTPGRILDHLRKGT 142 (460)
T ss_pred CcEEEEEECCCChHH--------------------------------------HHHHhcCCCCEEEEChHHHHHHHHcCC
Confidence 678877776543211 0112235678999999999776542
Q ss_pred hhcCCccEEEEeCCcccCCcc--hHHHHHHHhccc-ccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhcccc
Q 044798 553 LLDVEWGYAVLDEGHRIRNPN--AEISLVCKQLQT-VHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629 (1231)
Q Consensus 553 L~~~~wd~VILDEAH~IKN~~--Sk~skalk~L~t-~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI 629 (1231)
+....+++|||||||++.+.+ ..+...+..+.. ...+++|||+-. .+..+ ...+ +..|.
T Consensus 143 ~~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~-~~~~l---~~~~--------------~~~~~ 204 (460)
T PRK11776 143 LDLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPE-GIAAI---SQRF--------------QRDPV 204 (460)
T ss_pred ccHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcH-HHHHH---HHHh--------------cCCCE
Confidence 333468899999999987653 234445555543 345889999732 11111 1100 00011
Q ss_pred ccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCc
Q 044798 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSR 709 (1231)
Q Consensus 630 ~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~ 709 (1231)
..... .....+. .++.++ ..
T Consensus 205 ~i~~~---------------------------------~~~~~~~-i~~~~~-~~------------------------- 224 (460)
T PRK11776 205 EVKVE---------------------------------STHDLPA-IEQRFY-EV------------------------- 224 (460)
T ss_pred EEEEC---------------------------------cCCCCCC-eeEEEE-Ee-------------------------
Confidence 00000 0000011 111111 00
Q ss_pred chhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcE
Q 044798 710 NSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEY 789 (1231)
Q Consensus 710 ~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~ 789 (1231)
....|+..|..+|... .+.++||||+++..++.+...|...|+.+
T Consensus 225 ---------------------------------~~~~k~~~l~~ll~~~--~~~~~lVF~~t~~~~~~l~~~L~~~~~~v 269 (460)
T PRK11776 225 ---------------------------------SPDERLPALQRLLLHH--QPESCVVFCNTKKECQEVADALNAQGFSA 269 (460)
T ss_pred ---------------------------------CcHHHHHHHHHHHHhc--CCCceEEEECCHHHHHHHHHHHHhCCCcE
Confidence 0122555666666543 34689999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEE
Q 044798 790 RRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRL 869 (1231)
Q Consensus 790 ~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRL 869 (1231)
..+||.+++.+|+.+++.|.++ .+.| |++|+++++|||++++++||+||+|.++..|+||+||++|.|+.-. +|.|
T Consensus 270 ~~~hg~~~~~eR~~~l~~F~~g-~~~v-LVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G~--ai~l 345 (460)
T PRK11776 270 LALHGDLEQRDRDQVLVRFANR-SCSV-LVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKGL--ALSL 345 (460)
T ss_pred EEEeCCCCHHHHHHHHHHHHcC-CCcE-EEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcce--EEEE
Confidence 9999999999999999999987 4554 7889999999999999999999999999999999999999997643 4556
Q ss_pred EeCC
Q 044798 870 ITRG 873 (1231)
Q Consensus 870 it~g 873 (1231)
+..+
T Consensus 346 ~~~~ 349 (460)
T PRK11776 346 VAPE 349 (460)
T ss_pred Echh
Confidence 6543
No 30
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=9e-25 Score=260.63 Aligned_cols=325 Identities=18% Similarity=0.227 Sum_probs=217.6
Q ss_pred CCcccChhhhh--------hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcC--------CCCcE
Q 044798 390 GGLKIPESIFN--------NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN--------MYKPS 453 (1231)
Q Consensus 390 ~~~~iP~~i~~--------~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~--------~~kpv 453 (1231)
..+.+|+.+.. .+.|+|.+++.-+ ..+.+.|+..++|+|||+..+..+....... ....+
T Consensus 11 ~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~i----l~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 11 SDFALHPQVVEALEKKGFHNCTPIQALALPLT----LAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred hhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH----hCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 33556666644 4579999999876 4678899999999999998655443322211 12469
Q ss_pred EEEeCC-cchHHHHHHHHHHcC--CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHh
Q 044798 454 IVVCPV-TLLRQWKREAEKWYP--SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINR 530 (1231)
Q Consensus 454 LIV~P~-sLl~QW~~E~~kw~p--~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~ 530 (1231)
|||||. .|+.||.+++..+.. ++++.+++|...... ...
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~--------------------------------------~~~ 128 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDK--------------------------------------QLK 128 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHH--------------------------------------HHH
Confidence 999995 888999998888763 467777766432111 011
Q ss_pred hhcCCCCEEEeCHHHHHHHHh--hhhcCCccEEEEeCCcccCCcc--hHHHHHHHhccc---ccEEEecccCccCChHHH
Q 044798 531 VLRSESGLLITTYEQLRLLGE--KLLDVEWGYAVLDEGHRIRNPN--AEISLVCKQLQT---VHRIIMTGAPIQNKLSEL 603 (1231)
Q Consensus 531 ~~~~~~~VvItTYe~Lr~~~~--~L~~~~wd~VILDEAH~IKN~~--Sk~skalk~L~t---~~RllLTGTPiqNnl~EL 603 (1231)
.+....+|+|+|++.+..... .+....+.+||+||||++-+.+ ..+...+..+.. ...+++|||.-. .+.++
T Consensus 129 ~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~-~~~~~ 207 (423)
T PRK04837 129 VLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSY-RVREL 207 (423)
T ss_pred HhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCH-HHHHH
Confidence 223456899999999976653 2334568899999999986644 233334444432 224678888632 11111
Q ss_pred HHhhhhhcCCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEec
Q 044798 604 WSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCS 683 (1231)
Q Consensus 604 ~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~ 683 (1231)
.. .+ +..|....- .. .........+.+++
T Consensus 208 ~~--~~---------------~~~p~~i~v-~~--------------------------------~~~~~~~i~~~~~~- 236 (423)
T PRK04837 208 AF--EH---------------MNNPEYVEV-EP--------------------------------EQKTGHRIKEELFY- 236 (423)
T ss_pred HH--HH---------------CCCCEEEEE-cC--------------------------------CCcCCCceeEEEEe-
Confidence 00 00 000000000 00 00000000000000
Q ss_pred CCHHHHHHHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCC
Q 044798 684 LTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGH 763 (1231)
Q Consensus 684 Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~ 763 (1231)
.....|+..|..++.. ....
T Consensus 237 ----------------------------------------------------------~~~~~k~~~l~~ll~~--~~~~ 256 (423)
T PRK04837 237 ----------------------------------------------------------PSNEEKMRLLQTLIEE--EWPD 256 (423)
T ss_pred ----------------------------------------------------------CCHHHHHHHHHHHHHh--cCCC
Confidence 0112355566666653 2356
Q ss_pred eEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCC
Q 044798 764 RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDW 843 (1231)
Q Consensus 764 KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~W 843 (1231)
++||||+++..++.|...|...|+++..++|.++..+|..+++.|+++ .+. +|++|+++++|||++++++||+||+|+
T Consensus 257 ~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g-~~~-vLVaTdv~~rGiDip~v~~VI~~d~P~ 334 (423)
T PRK04837 257 RAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRG-DLD-ILVATDVAARGLHIPAVTHVFNYDLPD 334 (423)
T ss_pred eEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcC-CCc-EEEEechhhcCCCccccCEEEEeCCCC
Confidence 999999999999999999999999999999999999999999999988 454 478899999999999999999999999
Q ss_pred CcchHHHHHHhHHhhCCcccEEEEEEEeC
Q 044798 844 NPSTDVQARERAWRIGQKQDVTVYRLITR 872 (1231)
Q Consensus 844 NPs~d~QAigRa~RiGQkk~V~VYRLit~ 872 (1231)
++..|.|++||++|.|+.-.+ +-|++.
T Consensus 335 s~~~yiqR~GR~gR~G~~G~a--i~~~~~ 361 (423)
T PRK04837 335 DCEDYVHRIGRTGRAGASGHS--ISLACE 361 (423)
T ss_pred chhheEeccccccCCCCCeeE--EEEeCH
Confidence 999999999999999976543 345544
No 31
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.94 E-value=2.2e-24 Score=260.98 Aligned_cols=325 Identities=16% Similarity=0.216 Sum_probs=215.4
Q ss_pred CcccChhhh--------hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHH-HhhcC-------CCCcEE
Q 044798 391 GLKIPESIF--------NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA-LHFSN-------MYKPSI 454 (1231)
Q Consensus 391 ~~~iP~~i~--------~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~-L~~s~-------~~kpvL 454 (1231)
.+.+++.+. ..++|||.+++..+ ..+...|+...+|+|||+..+..+.. +.... ....+|
T Consensus 91 ~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~----~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aL 166 (475)
T PRK01297 91 DFNLAPELMHAIHDLGFPYCTPIQAQVLGYT----LAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRAL 166 (475)
T ss_pred HCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEE
Confidence 345566664 34789999999876 46788999999999999886544433 32211 134789
Q ss_pred EEeCC-cchHHHHHHHHHHcC--CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhh
Q 044798 455 VVCPV-TLLRQWKREAEKWYP--SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRV 531 (1231)
Q Consensus 455 IV~P~-sLl~QW~~E~~kw~p--~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~ 531 (1231)
||+|. .|..||.+.+..+.. ++++..++|...... .....
T Consensus 167 il~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~-------------------------------------~~~~~ 209 (475)
T PRK01297 167 IIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDK-------------------------------------QLKQL 209 (475)
T ss_pred EEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHH-------------------------------------HHHHH
Confidence 99995 888899999888764 456666666432111 11122
Q ss_pred hcCCCCEEEeCHHHHHHHHhh--hhcCCccEEEEeCCcccCCcch--HHHHHHHhcc---cccEEEecccCccCChHHHH
Q 044798 532 LRSESGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHRIRNPNA--EISLVCKQLQ---TVHRIIMTGAPIQNKLSELW 604 (1231)
Q Consensus 532 ~~~~~~VvItTYe~Lr~~~~~--L~~~~wd~VILDEAH~IKN~~S--k~skalk~L~---t~~RllLTGTPiqNnl~EL~ 604 (1231)
.....+|+|+|+++|...... +.....++||+||+|.+.+.+- .+...+..+. ....+++|+|... ++.++.
T Consensus 210 ~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~-~~~~~~ 288 (475)
T PRK01297 210 EARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTD-DVMNLA 288 (475)
T ss_pred hCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCH-HHHHHH
Confidence 234568999999999665432 2234578999999999976542 2334444442 2356888999532 222211
Q ss_pred HhhhhhcCCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecC
Q 044798 605 SLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSL 684 (1231)
Q Consensus 605 SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~L 684 (1231)
.. |+ ..|+...-. ......+...+.+++.
T Consensus 289 ~~--~~---------------~~~~~v~~~---------------------------------~~~~~~~~~~~~~~~~- 317 (475)
T PRK01297 289 KQ--WT---------------TDPAIVEIE---------------------------------PENVASDTVEQHVYAV- 317 (475)
T ss_pred HH--hc---------------cCCEEEEec---------------------------------cCcCCCCcccEEEEEe-
Confidence 10 00 000000000 0000000000111110
Q ss_pred CHHHHHHHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCe
Q 044798 685 TEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHR 764 (1231)
Q Consensus 685 t~~Qr~lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~K 764 (1231)
..+.|...|..++.. ....+
T Consensus 318 ----------------------------------------------------------~~~~k~~~l~~ll~~--~~~~~ 337 (475)
T PRK01297 318 ----------------------------------------------------------AGSDKYKLLYNLVTQ--NPWER 337 (475)
T ss_pred ----------------------------------------------------------cchhHHHHHHHHHHh--cCCCe
Confidence 012344444455442 23469
Q ss_pred EEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCC
Q 044798 765 VLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWN 844 (1231)
Q Consensus 765 VLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WN 844 (1231)
+||||+++..++.|...|...|+.+..++|.++..+|..+++.|+++ .+.+ |++|+++++|||+.+++.||+||+|++
T Consensus 338 ~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G-~~~v-LvaT~~l~~GIDi~~v~~VI~~~~P~s 415 (475)
T PRK01297 338 VMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREG-KIRV-LVATDVAGRGIHIDGISHVINFTLPED 415 (475)
T ss_pred EEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCC-CCcE-EEEccccccCCcccCCCEEEEeCCCCC
Confidence 99999999999999999999999999999999999999999999987 4554 778999999999999999999999999
Q ss_pred cchHHHHHHhHHhhCCcccEEEEEEEeC
Q 044798 845 PSTDVQARERAWRIGQKQDVTVYRLITR 872 (1231)
Q Consensus 845 Ps~d~QAigRa~RiGQkk~V~VYRLit~ 872 (1231)
+..|+|++||++|.|+.-.+ +.|+..
T Consensus 416 ~~~y~Qr~GRaGR~g~~g~~--i~~~~~ 441 (475)
T PRK01297 416 PDDYVHRIGRTGRAGASGVS--ISFAGE 441 (475)
T ss_pred HHHHHHhhCccCCCCCCceE--EEEecH
Confidence 99999999999999976543 334443
No 32
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.93 E-value=1.7e-24 Score=266.54 Aligned_cols=320 Identities=17% Similarity=0.260 Sum_probs=216.4
Q ss_pred CcccChhhh--------hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcC--------CCCcEE
Q 044798 391 GLKIPESIF--------NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN--------MYKPSI 454 (1231)
Q Consensus 391 ~~~iP~~i~--------~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~--------~~kpvL 454 (1231)
.+.+++.+. ..++|+|..++..+ ..+.+.|+..++|+|||+..+..+....... ....+|
T Consensus 13 ~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~----l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 13 SFDLHPALLAGLESAGFTRCTPIQALTLPVA----LPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH----hCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 344666553 34689999999887 4678899999999999998765554332111 125799
Q ss_pred EEeCC-cchHHHHHHHHHHcC--CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhh
Q 044798 455 VVCPV-TLLRQWKREAEKWYP--SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRV 531 (1231)
Q Consensus 455 IV~P~-sLl~QW~~E~~kw~p--~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~ 531 (1231)
||||. .|+.|+.+++.+|.. ++++..+++..... .....
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~--------------------------------------~q~~~ 130 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYD--------------------------------------KQREL 130 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHH--------------------------------------HHHHH
Confidence 99996 888999999998874 35666777654321 11122
Q ss_pred hcCCCCEEEeCHHHHHHHHhh---hhcCCccEEEEeCCcccCCcc--hHHHHHHHhcc---cccEEEecccCccCChHHH
Q 044798 532 LRSESGLLITTYEQLRLLGEK---LLDVEWGYAVLDEGHRIRNPN--AEISLVCKQLQ---TVHRIIMTGAPIQNKLSEL 603 (1231)
Q Consensus 532 ~~~~~~VvItTYe~Lr~~~~~---L~~~~wd~VILDEAH~IKN~~--Sk~skalk~L~---t~~RllLTGTPiqNnl~EL 603 (1231)
+....+|+|+|++.|..+... +....+.+|||||||.+.+.. ..+...+..+. ....+++|+|.-. .+.++
T Consensus 131 l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~-~v~~l 209 (572)
T PRK04537 131 LQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSH-RVLEL 209 (572)
T ss_pred HhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcchHHHHHHHHHhcccccCceEEEEeCCccH-HHHHH
Confidence 334568999999999776532 333457899999999986533 23334444443 2345778999532 11111
Q ss_pred HHhhhhhcCCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEec
Q 044798 604 WSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCS 683 (1231)
Q Consensus 604 ~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~ 683 (1231)
.. .++ ..|..... ......+....+.+++.
T Consensus 210 ~~--~~l---------------~~p~~i~v---------------------------------~~~~~~~~~i~q~~~~~ 239 (572)
T PRK04537 210 AY--EHM---------------NEPEKLVV---------------------------------ETETITAARVRQRIYFP 239 (572)
T ss_pred HH--HHh---------------cCCcEEEe---------------------------------ccccccccceeEEEEec
Confidence 10 000 00000000 00000000111111110
Q ss_pred CCHHHHHHHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCC
Q 044798 684 LTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGH 763 (1231)
Q Consensus 684 Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~ 763 (1231)
....|+..|..+|.. ..+.
T Consensus 240 -----------------------------------------------------------~~~~k~~~L~~ll~~--~~~~ 258 (572)
T PRK04537 240 -----------------------------------------------------------ADEEKQTLLLGLLSR--SEGA 258 (572)
T ss_pred -----------------------------------------------------------CHHHHHHHHHHHHhc--ccCC
Confidence 012344455555543 3467
Q ss_pred eEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCC
Q 044798 764 RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDW 843 (1231)
Q Consensus 764 KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~W 843 (1231)
++||||+++..++.|...|...|+.+..++|.++..+|..+++.|.++ .+. +|++|+++++|||+..+++||+||+||
T Consensus 259 k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G-~~~-VLVaTdv~arGIDip~V~~VInyd~P~ 336 (572)
T PRK04537 259 RTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG-QLE-ILVATDVAARGLHIDGVKYVYNYDLPF 336 (572)
T ss_pred cEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcC-CCe-EEEEehhhhcCCCccCCCEEEEcCCCC
Confidence 999999999999999999999999999999999999999999999987 444 478999999999999999999999999
Q ss_pred CcchHHHHHHhHHhhCCcccEEE
Q 044798 844 NPSTDVQARERAWRIGQKQDVTV 866 (1231)
Q Consensus 844 NPs~d~QAigRa~RiGQkk~V~V 866 (1231)
++..|+|++||++|.|..-.+.+
T Consensus 337 s~~~yvqRiGRaGR~G~~G~ai~ 359 (572)
T PRK04537 337 DAEDYVHRIGRTARLGEEGDAIS 359 (572)
T ss_pred CHHHHhhhhcccccCCCCceEEE
Confidence 99999999999999998655443
No 33
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.93 E-value=3.2e-24 Score=256.63 Aligned_cols=313 Identities=15% Similarity=0.177 Sum_probs=211.1
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhh-----cCCCCcEEEEeCC-cchHHHHHHHHHHc
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF-----SNMYKPSIVVCPV-TLLRQWKREAEKWY 473 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~-----s~~~kpvLIV~P~-sLl~QW~~E~~kw~ 473 (1231)
..++|+|.+++..++ .+.+.|+...+|+|||++++..+..... ......+|||+|. .|+.||.+.+..|.
T Consensus 22 ~~p~~iQ~~ai~~~~----~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~ 97 (434)
T PRK11192 22 TRPTAIQAEAIPPAL----DGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELA 97 (434)
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHH
Confidence 357899999998773 5678999999999999986554433221 1123579999996 68889888888775
Q ss_pred C--CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHh
Q 044798 474 P--SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGE 551 (1231)
Q Consensus 474 p--~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~ 551 (1231)
. ++.+..++|..... .....+....+|+|+|++.|..+..
T Consensus 98 ~~~~~~v~~~~gg~~~~--------------------------------------~~~~~l~~~~~IlV~Tp~rl~~~~~ 139 (434)
T PRK11192 98 KHTHLDIATITGGVAYM--------------------------------------NHAEVFSENQDIVVATPGRLLQYIK 139 (434)
T ss_pred ccCCcEEEEEECCCCHH--------------------------------------HHHHHhcCCCCEEEEChHHHHHHHH
Confidence 3 46677776654321 1112234556899999999876543
Q ss_pred h--hhcCCccEEEEeCCcccCCcc--hHHHHHHHhccc-ccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhc
Q 044798 552 K--LLDVEWGYAVLDEGHRIRNPN--AEISLVCKQLQT-VHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFA 626 (1231)
Q Consensus 552 ~--L~~~~wd~VILDEAH~IKN~~--Sk~skalk~L~t-~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~ 626 (1231)
. +....+++||+||||++...+ ..+...+..+.. ...+++|||+-...+.++.. .+. .
T Consensus 140 ~~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~---~~~--------------~ 202 (434)
T PRK11192 140 EENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAE---RLL--------------N 202 (434)
T ss_pred cCCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHH---HHc--------------c
Confidence 2 334467899999999997644 223333333332 33478999984322222111 100 0
Q ss_pred cccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhh
Q 044798 627 VPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD 706 (1231)
Q Consensus 627 ~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~ 706 (1231)
.|+....... ........+.++. ..
T Consensus 203 ~~~~i~~~~~---------------------------------~~~~~~i~~~~~~-~~--------------------- 227 (434)
T PRK11192 203 DPVEVEAEPS---------------------------------RRERKKIHQWYYR-AD--------------------- 227 (434)
T ss_pred CCEEEEecCC---------------------------------cccccCceEEEEE-eC---------------------
Confidence 0110000000 0000000110000 00
Q ss_pred cCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcC
Q 044798 707 GSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASG 786 (1231)
Q Consensus 707 ~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~G 786 (1231)
....|...|..++.. ....++||||.++..++.|...|...|
T Consensus 228 ------------------------------------~~~~k~~~l~~l~~~--~~~~~~lVF~~s~~~~~~l~~~L~~~~ 269 (434)
T PRK11192 228 ------------------------------------DLEHKTALLCHLLKQ--PEVTRSIVFVRTRERVHELAGWLRKAG 269 (434)
T ss_pred ------------------------------------CHHHHHHHHHHHHhc--CCCCeEEEEeCChHHHHHHHHHHHhCC
Confidence 012345555555542 235699999999999999999999999
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEE
Q 044798 787 YEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866 (1231)
Q Consensus 787 i~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~V 866 (1231)
+.+..++|.++..+|..+++.|+++ .+. +|++|+++++|||++.+++||+||+|+++..|+|++||++|.|..-.+.+
T Consensus 270 ~~~~~l~g~~~~~~R~~~l~~f~~G-~~~-vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~ 347 (434)
T PRK11192 270 INCCYLEGEMVQAKRNEAIKRLTDG-RVN-VLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRAGRKGTAIS 347 (434)
T ss_pred CCEEEecCCCCHHHHHHHHHHHhCC-CCc-EEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccCCCCceEEE
Confidence 9999999999999999999999987 454 47889999999999999999999999999999999999999998765444
No 34
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=2.2e-25 Score=248.99 Aligned_cols=325 Identities=18% Similarity=0.222 Sum_probs=232.8
Q ss_pred hhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHH-HHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHc--C
Q 044798 399 FNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQ-VLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWY--P 474 (1231)
Q Consensus 399 ~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIq-aIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~--p 474 (1231)
|..+.+.|.+++..+ .++..+|.+.|+|+|||.. +|-++..|+.......+||++|. .|..|....|.... -
T Consensus 81 ~~~PT~IQ~~aiP~~----L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~i 156 (476)
T KOG0330|consen 81 WKKPTKIQSEAIPVA----LGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGI 156 (476)
T ss_pred cCCCchhhhhhcchh----hCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhcccc
Confidence 556788999999877 5788999999999999998 55666677766666789999996 66777777788875 4
Q ss_pred CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--
Q 044798 475 SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK-- 552 (1231)
Q Consensus 475 ~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~-- 552 (1231)
++++.++.|+...+. +...+...+||+|.|++.+..+...
T Consensus 157 glr~~~lvGG~~m~~--------------------------------------q~~~L~kkPhilVaTPGrL~dhl~~Tk 198 (476)
T KOG0330|consen 157 GLRVAVLVGGMDMML--------------------------------------QANQLSKKPHILVATPGRLWDHLENTK 198 (476)
T ss_pred CeEEEEEecCchHHH--------------------------------------HHHHhhcCCCEEEeCcHHHHHHHHhcc
Confidence 688888888765332 2222446679999999999888763
Q ss_pred -hhcCCccEEEEeCCcccCCcch--HHHHHHHhcccccE-EEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccc
Q 044798 553 -LLDVEWGYAVLDEGHRIRNPNA--EISLVCKQLQTVHR-IIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP 628 (1231)
Q Consensus 553 -L~~~~wd~VILDEAH~IKN~~S--k~skalk~L~t~~R-llLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~p 628 (1231)
+..-...|+|+|||+++.|.+- .....++.+...++ ++.|||
T Consensus 199 gf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~erqt~LfsAT---------------------------------- 244 (476)
T KOG0330|consen 199 GFSLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRERQTFLFSAT---------------------------------- 244 (476)
T ss_pred CccHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCccceEEEEEee----------------------------------
Confidence 3333567999999999987652 34455555544444 333444
Q ss_pred cccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcC
Q 044798 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGS 708 (1231)
Q Consensus 629 I~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~ 708 (1231)
|+..-+++-+.-+....- +. .
T Consensus 245 -------------------------------------------------------Mt~kv~kL~rasl~~p~~--v~--~ 265 (476)
T KOG0330|consen 245 -------------------------------------------------------MTKKVRKLQRASLDNPVK--VA--V 265 (476)
T ss_pred -------------------------------------------------------cchhhHHHHhhccCCCeE--Ee--c
Confidence 333222222111100000 00 0
Q ss_pred cchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCc
Q 044798 709 RNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYE 788 (1231)
Q Consensus 709 ~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~ 788 (1231)
.+....+..|.+ .|-.....-|-.+|+.||+... |..+||||......+.+.-+|...|+.
T Consensus 266 s~ky~tv~~lkQ-----------------~ylfv~~k~K~~yLV~ll~e~~--g~s~iVF~~t~~tt~~la~~L~~lg~~ 326 (476)
T KOG0330|consen 266 SSKYQTVDHLKQ-----------------TYLFVPGKDKDTYLVYLLNELA--GNSVIVFCNTCNTTRFLALLLRNLGFQ 326 (476)
T ss_pred cchhcchHHhhh-----------------heEeccccccchhHHHHHHhhc--CCcEEEEEeccchHHHHHHHHHhcCcc
Confidence 000000011111 0111123346677888988644 679999999999999999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEE
Q 044798 789 YRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYR 868 (1231)
Q Consensus 789 ~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYR 868 (1231)
+..++|.|++..|..+++.|+++. +-+|++|++|++|||++.++.||+||.|-+..+|+||.||+.|.| +.-.+..
T Consensus 327 a~~LhGqmsq~~Rlg~l~~Fk~~~--r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG--rsG~~It 402 (476)
T KOG0330|consen 327 AIPLHGQMSQSKRLGALNKFKAGA--RSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG--RSGKAIT 402 (476)
T ss_pred eecccchhhHHHHHHHHHHHhccC--CcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC--CCcceEE
Confidence 999999999999999999999985 667899999999999999999999999999999999999999999 6667777
Q ss_pred EEeCCCHHHHHHHHH
Q 044798 869 LITRGTIEEKVYHRQ 883 (1231)
Q Consensus 869 Lit~gTIEEkIy~rQ 883 (1231)
|++. .|--.|++.
T Consensus 403 lVtq--yDve~~qrI 415 (476)
T KOG0330|consen 403 LVTQ--YDVELVQRI 415 (476)
T ss_pred EEeh--hhhHHHHHH
Confidence 8988 444444443
No 35
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.93 E-value=1.9e-24 Score=260.16 Aligned_cols=310 Identities=16% Similarity=0.194 Sum_probs=207.7
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcC-------CCCcEEEEeCC-cchHHHHHHHHH
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN-------MYKPSIVVCPV-TLLRQWKREAEK 471 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~-------~~kpvLIV~P~-sLl~QW~~E~~k 471 (1231)
..++|+|.+++.-+ ..+...|+..++|+|||+..+..+....... ....+|||||. .|+.||.+++..
T Consensus 22 ~~pt~iQ~~ai~~i----l~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~ 97 (456)
T PRK10590 22 REPTPIQQQAIPAV----LEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRD 97 (456)
T ss_pred CCCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHH
Confidence 35789999999877 4577899999999999998665544433221 11358999995 888999999998
Q ss_pred HcC--CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHH
Q 044798 472 WYP--SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLL 549 (1231)
Q Consensus 472 w~p--~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~ 549 (1231)
|.. ++++..+.+...... ....+...++|+|+|++.|...
T Consensus 98 ~~~~~~~~~~~~~gg~~~~~--------------------------------------~~~~l~~~~~IiV~TP~rL~~~ 139 (456)
T PRK10590 98 YSKYLNIRSLVVFGGVSINP--------------------------------------QMMKLRGGVDVLVATPGRLLDL 139 (456)
T ss_pred HhccCCCEEEEEECCcCHHH--------------------------------------HHHHHcCCCcEEEEChHHHHHH
Confidence 864 345555554432110 0011235578999999999665
Q ss_pred Hh--hhhcCCccEEEEeCCcccCCcch--HHHHHHHhcccc-cEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHh
Q 044798 550 GE--KLLDVEWGYAVLDEGHRIRNPNA--EISLVCKQLQTV-HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAE 624 (1231)
Q Consensus 550 ~~--~L~~~~wd~VILDEAH~IKN~~S--k~skalk~L~t~-~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~ 624 (1231)
.. .+....+++|||||||++-..+- .+...+..+... ..+++|||+-. .+.++.. .+
T Consensus 140 ~~~~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~-~~~~l~~---~~-------------- 201 (456)
T PRK10590 140 EHQNAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSD-DIKALAE---KL-------------- 201 (456)
T ss_pred HHcCCcccccceEEEeecHHHHhccccHHHHHHHHHhCCccCeEEEEeCCCcH-HHHHHHH---HH--------------
Confidence 43 23344688999999999876442 333445555433 46889999632 1122111 11
Q ss_pred hccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCc-eEEEEEecCCHHHHHHHHHHHhhHHHHH
Q 044798 625 FAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKK-TEHVLFCSLTEEQRAVYRAFLASSEVEQ 703 (1231)
Q Consensus 625 f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K-~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~ 703 (1231)
+..|....-. + ....++. ...+.++. .
T Consensus 202 ~~~~~~i~~~---------------------------~------~~~~~~~i~~~~~~~~--~----------------- 229 (456)
T PRK10590 202 LHNPLEIEVA---------------------------R------RNTASEQVTQHVHFVD--K----------------- 229 (456)
T ss_pred cCCCeEEEEe---------------------------c------ccccccceeEEEEEcC--H-----------------
Confidence 0011000000 0 0000011 11111111 0
Q ss_pred HhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHH
Q 044798 704 ILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLI 783 (1231)
Q Consensus 704 il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~ 783 (1231)
..|...|..++.. ....++||||.++...+.|...|.
T Consensus 230 -----------------------------------------~~k~~~l~~l~~~--~~~~~~lVF~~t~~~~~~l~~~L~ 266 (456)
T PRK10590 230 -----------------------------------------KRKRELLSQMIGK--GNWQQVLVFTRTKHGANHLAEQLN 266 (456)
T ss_pred -----------------------------------------HHHHHHHHHHHHc--CCCCcEEEEcCcHHHHHHHHHHHH
Confidence 1122223333321 234689999999999999999999
Q ss_pred HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCccc
Q 044798 784 ASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQD 863 (1231)
Q Consensus 784 ~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~ 863 (1231)
..|+.+..+||.++..+|..+++.|.++ .+.| |++|+++++|||++++++||+||+|.++..|+|++||++|.|.+-.
T Consensus 267 ~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~~i-LVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ 344 (456)
T PRK10590 267 KDGIRSAAIHGNKSQGARTRALADFKSG-DIRV-LVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGE 344 (456)
T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHcC-CCcE-EEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccCCCCee
Confidence 9999999999999999999999999987 4554 7789999999999999999999999999999999999999998765
Q ss_pred EEE
Q 044798 864 VTV 866 (1231)
Q Consensus 864 V~V 866 (1231)
+.+
T Consensus 345 ai~ 347 (456)
T PRK10590 345 ALS 347 (456)
T ss_pred EEE
Confidence 443
No 36
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.93 E-value=1.7e-24 Score=264.39 Aligned_cols=331 Identities=17% Similarity=0.199 Sum_probs=222.7
Q ss_pred CCcccccCCcccChhhhh--------hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHH-HHhh-------
Q 044798 383 PPFVTLEGGLKIPESIFN--------NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLG-ALHF------- 446 (1231)
Q Consensus 383 ~~~~~~~~~~~iP~~i~~--------~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~-~L~~------- 446 (1231)
|.++..+..+.+|+.+.. .++|+|.+++..+ ..+...|+..++|+|||+..+..+. .+..
T Consensus 117 p~pi~~f~~~~l~~~l~~~L~~~g~~~ptpiQ~~aip~i----l~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~ 192 (518)
T PLN00206 117 PPPILSFSSCGLPPKLLLNLETAGYEFPTPIQMQAIPAA----LSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPS 192 (518)
T ss_pred CchhcCHHhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHH----hcCCCEEEEecCCCCccHHHHHHHHHHHHhhcccccc
Confidence 344445555667877744 4689999999877 4678999999999999998655443 2221
Q ss_pred cCCCCcEEEEeCC-cchHHHHHHHHHHcCC--CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcch
Q 044798 447 SNMYKPSIVVCPV-TLLRQWKREAEKWYPS--FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKK 523 (1231)
Q Consensus 447 s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~--lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 523 (1231)
......+|||+|. .|+.|+..++..+... +++..+.++.....
T Consensus 193 ~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~---------------------------------- 238 (518)
T PLN00206 193 EQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQ---------------------------------- 238 (518)
T ss_pred ccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHH----------------------------------
Confidence 1123579999996 7888998888887644 34444443321100
Q ss_pred hhHHHHhhhcCCCCEEEeCHHHHHHHHhh--hhcCCccEEEEeCCcccCCcc--hHHHHHHHhcccccEEEecccCccCC
Q 044798 524 WDLLINRVLRSESGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHRIRNPN--AEISLVCKQLQTVHRIIMTGAPIQNK 599 (1231)
Q Consensus 524 ~~~~i~~~~~~~~~VvItTYe~Lr~~~~~--L~~~~wd~VILDEAH~IKN~~--Sk~skalk~L~t~~RllLTGTPiqNn 599 (1231)
.+ ..+..+.+|+|+|++.+...... +......+||+||||++.+.+ ..+...+..+.....+++|||.-. .
T Consensus 239 ---q~-~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~~~q~l~~SATl~~-~ 313 (518)
T PLN00206 239 ---QL-YRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALSQPQVLLFSATVSP-E 313 (518)
T ss_pred ---HH-HHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhCCCCcEEEEEeeCCH-H
Confidence 01 11234578999999998765432 333467899999999996543 345556666677778999999632 1
Q ss_pred hHHHHHhhhhhcCCCCCChhHHHHhhccccc--cCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCc--
Q 044798 600 LSELWSLFDFVFPGKLGVLPVFEAEFAVPIT--VGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKK-- 675 (1231)
Q Consensus 600 l~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~--~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K-- 675 (1231)
+.. +...+.. .++. .+. ...|..
T Consensus 314 v~~---l~~~~~~--------------~~~~i~~~~------------------------------------~~~~~~~v 340 (518)
T PLN00206 314 VEK---FASSLAK--------------DIILISIGN------------------------------------PNRPNKAV 340 (518)
T ss_pred HHH---HHHHhCC--------------CCEEEEeCC------------------------------------CCCCCcce
Confidence 111 1111100 0000 000 000111
Q ss_pred eEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHH
Q 044798 676 TEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVL 755 (1231)
Q Consensus 676 ~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLL 755 (1231)
...++++.. ..|...|.++|
T Consensus 341 ~q~~~~~~~------------------------------------------------------------~~k~~~l~~~l 360 (518)
T PLN00206 341 KQLAIWVET------------------------------------------------------------KQKKQKLFDIL 360 (518)
T ss_pred eEEEEeccc------------------------------------------------------------hhHHHHHHHHH
Confidence 111222221 11233344555
Q ss_pred HHHHhcCCeEEEEeccHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCC
Q 044798 756 KVWKDQGHRVLLFAQTQQMLDILESFLIA-SGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGAN 834 (1231)
Q Consensus 756 k~~~~~g~KVLVFSQ~~~~LdiLe~~L~~-~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~An 834 (1231)
........++|||+.++..++.|...|.. .|+.+..+||.++..+|..+++.|.++ .+.| |++|+++++|||++.++
T Consensus 361 ~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G-~~~I-LVaTdvl~rGiDip~v~ 438 (518)
T PLN00206 361 KSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVG-EVPV-IVATGVLGRGVDLLRVR 438 (518)
T ss_pred HhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCC-CCCE-EEEecHhhccCCcccCC
Confidence 44333345899999999999999999975 599999999999999999999999997 4554 78999999999999999
Q ss_pred EEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCC
Q 044798 835 RVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 835 rVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~g 873 (1231)
+||+||+|.++..|+|++||++|.|..-. +|.|++.+
T Consensus 439 ~VI~~d~P~s~~~yihRiGRaGR~g~~G~--ai~f~~~~ 475 (518)
T PLN00206 439 QVIIFDMPNTIKEYIHQIGRASRMGEKGT--AIVFVNEE 475 (518)
T ss_pred EEEEeCCCCCHHHHHHhccccccCCCCeE--EEEEEchh
Confidence 99999999999999999999999997543 44456543
No 37
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.93 E-value=4.1e-24 Score=264.99 Aligned_cols=311 Identities=15% Similarity=0.143 Sum_probs=213.2
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHH-HHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHc---C
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSF-LGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWY---P 474 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~-L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~---p 474 (1231)
..+.|+|.+++..+. .+...|+...+|+|||++.+.. +..+........+|||||. .|+.||..++..|. +
T Consensus 27 ~~ptpiQ~~ai~~ll----~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 27 EKPSPIQAECIPHLL----NGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 357899999998873 5678999999999999986443 3333333334578999996 78899999988774 5
Q ss_pred CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--
Q 044798 475 SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK-- 552 (1231)
Q Consensus 475 ~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~-- 552 (1231)
++.+..+++..... .....+....+|||+|++.+..+...
T Consensus 103 ~i~v~~~~gG~~~~--------------------------------------~q~~~l~~~~~IVVgTPgrl~d~l~r~~ 144 (629)
T PRK11634 103 GVNVVALYGGQRYD--------------------------------------VQLRALRQGPQIVVGTPGRLLDHLKRGT 144 (629)
T ss_pred CceEEEEECCcCHH--------------------------------------HHHHHhcCCCCEEEECHHHHHHHHHcCC
Confidence 67777777654211 01112335678999999999766542
Q ss_pred hhcCCccEEEEeCCcccCCcc--hHHHHHHHhcccc-cEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhcccc
Q 044798 553 LLDVEWGYAVLDEGHRIRNPN--AEISLVCKQLQTV-HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629 (1231)
Q Consensus 553 L~~~~wd~VILDEAH~IKN~~--Sk~skalk~L~t~-~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI 629 (1231)
+....+.+|||||||.+.+.. ..+...+..+... ..+++|||.-. .+.++... | +..|.
T Consensus 145 l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~-~i~~i~~~--~---------------l~~~~ 206 (629)
T PRK11634 145 LDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPE-AIRRITRR--F---------------MKEPQ 206 (629)
T ss_pred cchhhceEEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCCh-hHHHHHHH--H---------------cCCCe
Confidence 334467899999999987654 3345556666444 34778998521 11111100 0 00000
Q ss_pred ccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCc
Q 044798 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSR 709 (1231)
Q Consensus 630 ~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~ 709 (1231)
... ... .....|. ..+.. +.
T Consensus 207 ~i~-------------------------------i~~-~~~~~~~-i~q~~-~~-------------------------- 226 (629)
T PRK11634 207 EVR-------------------------------IQS-SVTTRPD-ISQSY-WT-------------------------- 226 (629)
T ss_pred EEE-------------------------------ccC-ccccCCc-eEEEE-EE--------------------------
Confidence 000 000 0000000 00000 00
Q ss_pred chhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcE
Q 044798 710 NSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEY 789 (1231)
Q Consensus 710 ~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~ 789 (1231)
.....|...|..+|... ...++||||.++...+.|...|...|+.+
T Consensus 227 --------------------------------v~~~~k~~~L~~~L~~~--~~~~~IVF~~tk~~a~~l~~~L~~~g~~~ 272 (629)
T PRK11634 227 --------------------------------VWGMRKNEALVRFLEAE--DFDAAIIFVRTKNATLEVAEALERNGYNS 272 (629)
T ss_pred --------------------------------echhhHHHHHHHHHHhc--CCCCEEEEeccHHHHHHHHHHHHhCCCCE
Confidence 01123555666666542 34589999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEE
Q 044798 790 RRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866 (1231)
Q Consensus 790 ~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~V 866 (1231)
..++|.+++.+|..+++.|.++ .+. +||+|+++++|||++.+++||+||+|.++..|+|++||++|.|..-.+.+
T Consensus 273 ~~lhgd~~q~~R~~il~~Fr~G-~~~-ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~ 347 (629)
T PRK11634 273 AALNGDMNQALREQTLERLKDG-RLD-ILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALL 347 (629)
T ss_pred EEeeCCCCHHHHHHHHHHHhCC-CCC-EEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCcceEEE
Confidence 9999999999999999999987 444 57899999999999999999999999999999999999999997654433
No 38
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.93 E-value=7.5e-23 Score=248.36 Aligned_cols=439 Identities=19% Similarity=0.190 Sum_probs=264.1
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeEE
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHVE 479 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV~ 479 (1231)
.|++||.+-++-. . +.++|++.+||+|||+.|+.++.......+.+++++++|. .|+.|....|..++-+..+.
T Consensus 62 ~lR~YQ~eivq~A----L-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T 136 (746)
T KOG0354|consen 62 ELRNYQEELVQPA----L-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVT 136 (746)
T ss_pred cccHHHHHHhHHh----h-cCCeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhccCcccce
Confidence 7999999999876 3 7899999999999999988777777667777999999996 77778778888877555555
Q ss_pred EEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhc---C
Q 044798 480 LLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLD---V 556 (1231)
Q Consensus 480 il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~---~ 556 (1231)
+.++....... .. .+....+|++.|++.+.+....-.. .
T Consensus 137 ~~l~~~~~~~~-----------------------------r~---------~i~~s~~vff~TpQil~ndL~~~~~~~ls 178 (746)
T KOG0354|consen 137 GQLGDTVPRSN-----------------------------RG---------EIVASKRVFFRTPQILENDLKSGLHDELS 178 (746)
T ss_pred eeccCccCCCc-----------------------------hh---------hhhcccceEEeChHhhhhhcccccccccc
Confidence 55544221100 00 1123458999999999887654333 3
Q ss_pred CccEEEEeCCcccCCc--chHHHHHHHhcccc--cEEEecccCccCChHHHHHhhhhhcCCCCCCh--hHHHHhhccccc
Q 044798 557 EWGYAVLDEGHRIRNP--NAEISLVCKQLQTV--HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVL--PVFEAEFAVPIT 630 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~--~Sk~skalk~L~t~--~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~--~~F~~~f~~pI~ 630 (1231)
.|.++|+||||+-... .+.+-..+..++.. ..|+|||||= +++....+.++=|... +... ..-...|..
T Consensus 179 ~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~k~~~~qILgLTASpG-~~~~~v~~~I~~L~as-ldvr~~ssi~~~y~~--- 253 (746)
T KOG0354|consen 179 DFSLIVFDECHRTSKNHPYNNIMREYLDLKNQGNQILGLTASPG-SKLEQVQNVIDNLCAS-LDVRTESSIKSNYEE--- 253 (746)
T ss_pred eEEEEEEcccccccccccHHHHHHHHHHhhhccccEEEEecCCC-ccHHHHHHHHHhhhee-cccchhhhhhhhHHH---
Confidence 4899999999997543 33444444444333 4577999997 6777776666665544 3211 111222211
Q ss_pred cCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhh-cCCC-ceEE-EEEe------cCCHHHHH-HHHHHHhhHH
Q 044798 631 VGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNA-QLPK-KTEH-VLFC------SLTEEQRA-VYRAFLASSE 700 (1231)
Q Consensus 631 ~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~-dLP~-K~e~-vv~~------~Lt~~Qr~-lY~~~l~s~~ 700 (1231)
..........-..........|..+|.||+.+-....+.. ..+. ..++ ++.. .....|+- +|-..+....
T Consensus 254 lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~ 333 (746)
T KOG0354|consen 254 LREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYN 333 (746)
T ss_pred HhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHH
Confidence 0000000000011122233456677777765543222210 0000 0000 0000 01111221 1100000000
Q ss_pred H-HHHhhcCcchhHHHHHHH------------HHh----CChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhc--
Q 044798 701 V-EQILDGSRNSLYGIDVMR------------KIC----NHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQ-- 761 (1231)
Q Consensus 701 ~-~~il~~~~~~l~~i~~LR------------kic----nHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~-- 761 (1231)
. ..+..+-+ .+..+..+. +.+ .++.+......+..-....+...+|+..|.++|......
T Consensus 334 ~~ll~~~gir-~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~ 412 (746)
T KOG0354|consen 334 LALLISDGIR-FVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNP 412 (746)
T ss_pred HHHHhhcchh-hHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCC
Confidence 0 00001111 111111110 111 111111111111111222235688999999999877654
Q ss_pred CCeEEEEeccHHHHHHHHHHHHH---cCCcEEEEeC--------CCCHHHHHHHHHHHhCCCCceEEEEeccccccccCC
Q 044798 762 GHRVLLFAQTQQMLDILESFLIA---SGYEYRRMDG--------LTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNL 830 (1231)
Q Consensus 762 g~KVLVFSQ~~~~LdiLe~~L~~---~Gi~~~rIdG--------sts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNL 830 (1231)
..++|||+.++..++.|..+|.. .|++...+-| +|++.+.+.+++.|++| .+ .+|++|.+|.+|||+
T Consensus 413 dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G-~~-NvLVATSV~EEGLDI 490 (746)
T KOG0354|consen 413 DSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG-EI-NVLVATSVAEEGLDI 490 (746)
T ss_pred CccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCC-Cc-cEEEEecchhccCCc
Confidence 56999999999999999999983 2566666666 48899999999999997 44 457889999999999
Q ss_pred CCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhc
Q 044798 831 TGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895 (1231)
Q Consensus 831 t~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~ 895 (1231)
..||-||.||..-||...+||+|| +| ++.-+++.|.+ |.-+-+.-..+..|+.+++..+.
T Consensus 491 ~ec~lVIcYd~~snpIrmIQrrGR-gR---a~ns~~vll~t-~~~~~~~E~~~~~~e~lm~~~i~ 550 (746)
T KOG0354|consen 491 GECNLVICYDYSSNPIRMVQRRGR-GR---ARNSKCVLLTT-GSEVIEFERNNLAKEKLMNQTIS 550 (746)
T ss_pred ccccEEEEecCCccHHHHHHHhcc-cc---ccCCeEEEEEc-chhHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999999999 66 45555665556 65555555566788888877765
No 39
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=1.6e-23 Score=253.08 Aligned_cols=308 Identities=13% Similarity=0.127 Sum_probs=211.6
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeE
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHV 478 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV 478 (1231)
..++|+|.+++.-+ ..+..+++..++|+|||+..+..+. . ..+.+|||+|. .|+.||...+... +..+
T Consensus 10 ~~~r~~Q~~ai~~~----l~g~dvlv~apTGsGKTl~y~lp~l--~---~~~~~lVi~P~~~L~~dq~~~l~~~--gi~~ 78 (470)
T TIGR00614 10 SSFRPVQLEVINAV----LLGRDCFVVMPTGGGKSLCYQLPAL--C---SDGITLVISPLISLMEDQVLQLKAS--GIPA 78 (470)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCCcHhHHHHHHHH--H---cCCcEEEEecHHHHHHHHHHHHHHc--CCcE
Confidence 46899999999877 3566899999999999987543322 2 24689999995 8889999998865 3455
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHH---HHhhh-h
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRL---LGEKL-L 554 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~---~~~~L-~ 554 (1231)
..+.+...... ...+.........+|+++|++.+.. ....+ .
T Consensus 79 ~~l~~~~~~~~----------------------------------~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~ 124 (470)
T TIGR00614 79 TFLNSSQSKEQ----------------------------------QKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEE 124 (470)
T ss_pred EEEeCCCCHHH----------------------------------HHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHh
Confidence 55554332110 0112223334557899999998753 22334 4
Q ss_pred cCCccEEEEeCCcccCCcchH-------HHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhcc
Q 044798 555 DVEWGYAVLDEGHRIRNPNAE-------ISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAV 627 (1231)
Q Consensus 555 ~~~wd~VILDEAH~IKN~~Sk-------~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~ 627 (1231)
...+.+||+||||.+...+.. +......+.....++|||||-.....++...+.+-.|..+. ..|
T Consensus 125 ~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~------~s~-- 196 (470)
T TIGR00614 125 RKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFC------TSF-- 196 (470)
T ss_pred cCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEe------CCC--
Confidence 567899999999999654321 22223334556789999999766555555544332221000 000
Q ss_pred ccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhc
Q 044798 628 PITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDG 707 (1231)
Q Consensus 628 pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~ 707 (1231)
+-|.. .+.+.-..
T Consensus 197 -------------------------------------------~r~nl-~~~v~~~~----------------------- 209 (470)
T TIGR00614 197 -------------------------------------------DRPNL-YYEVRRKT----------------------- 209 (470)
T ss_pred -------------------------------------------CCCCc-EEEEEeCC-----------------------
Confidence 00000 00000000
Q ss_pred CcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCC
Q 044798 708 SRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGY 787 (1231)
Q Consensus 708 ~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi 787 (1231)
...+..+..+|.. ...+.++||||.++...+.+...|...|+
T Consensus 210 -------------------------------------~~~~~~l~~~l~~-~~~~~~~IIF~~s~~~~e~la~~L~~~g~ 251 (470)
T TIGR00614 210 -------------------------------------PKILEDLLRFIRK-EFKGKSGIIYCPSRKKSEQVTASLQNLGI 251 (470)
T ss_pred -------------------------------------ccHHHHHHHHHHH-hcCCCceEEEECcHHHHHHHHHHHHhcCC
Confidence 0111222233322 12466789999999999999999999999
Q ss_pred cEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEE
Q 044798 788 EYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVY 867 (1231)
Q Consensus 788 ~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VY 867 (1231)
.+..+||.++..+|..+++.|.++ .+.| |++|.+.|+|||++.++.||+|++|.++..|.|++||++|.|+...+.+|
T Consensus 252 ~~~~~H~~l~~~eR~~i~~~F~~g-~~~v-LVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~ 329 (470)
T TIGR00614 252 AAGAYHAGLEISARDDVHHKFQRD-EIQV-VVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHLF 329 (470)
T ss_pred CeeEeeCCCCHHHHHHHHHHHHcC-CCcE-EEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEE
Confidence 999999999999999999999987 5555 67899999999999999999999999999999999999999988776554
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.91 E-value=8.4e-23 Score=253.47 Aligned_cols=305 Identities=17% Similarity=0.197 Sum_probs=214.4
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeE
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHV 478 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV 478 (1231)
..++|+|.+++.-+ ..+..++++.++|.|||+.....+ +. ..+.+|||+|. +|+.|+...+... +..+
T Consensus 12 ~~fr~~Q~~~i~~i----l~g~dvlv~~PTG~GKTl~y~lpa--l~---~~g~~lVisPl~sL~~dq~~~l~~~--gi~~ 80 (591)
T TIGR01389 12 DDFRPGQEEIISHV----LDGRDVLVVMPTGGGKSLCYQVPA--LL---LKGLTVVISPLISLMKDQVDQLRAA--GVAA 80 (591)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCccHhHHHHHHH--HH---cCCcEEEEcCCHHHHHHHHHHHHHc--CCcE
Confidence 46899999999877 356789999999999999865333 22 24679999995 7889999998875 4566
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHH--HHhhhhcC
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRL--LGEKLLDV 556 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~--~~~~L~~~ 556 (1231)
..+++....... ............+++++|++.+.. ....+...
T Consensus 81 ~~~~s~~~~~~~----------------------------------~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~ 126 (591)
T TIGR01389 81 AYLNSTLSAKEQ----------------------------------QDIEKALVNGELKLLYVAPERLEQDYFLNMLQRI 126 (591)
T ss_pred EEEeCCCCHHHH----------------------------------HHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcC
Confidence 666654332110 112233344567899999999843 33456667
Q ss_pred CccEEEEeCCcccCCcch-------HHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhcccc
Q 044798 557 EWGYAVLDEGHRIRNPNA-------EISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~~S-------k~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI 629 (1231)
.+++||+||||.+-..+. .+......+.....++||||+......++...+.+-.+.. |...|
T Consensus 127 ~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~------~~~~~---- 196 (591)
T TIGR01389 127 PIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANE------FITSF---- 196 (591)
T ss_pred CCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCe------EecCC----
Confidence 899999999999864321 2333344454556899999987655555554433221110 00000
Q ss_pred ccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCc
Q 044798 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSR 709 (1231)
Q Consensus 630 ~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~ 709 (1231)
+-|.....++.
T Consensus 197 -----------------------------------------~r~nl~~~v~~---------------------------- 207 (591)
T TIGR01389 197 -----------------------------------------DRPNLRFSVVK---------------------------- 207 (591)
T ss_pred -----------------------------------------CCCCcEEEEEe----------------------------
Confidence 00100000000
Q ss_pred chhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcE
Q 044798 710 NSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEY 789 (1231)
Q Consensus 710 ~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~ 789 (1231)
...+...+.++|... .+.++||||.++...+.+...|...|+++
T Consensus 208 ----------------------------------~~~~~~~l~~~l~~~--~~~~~IIf~~sr~~~e~la~~L~~~g~~~ 251 (591)
T TIGR01389 208 ----------------------------------KNNKQKFLLDYLKKH--RGQSGIIYASSRKKVEELAERLESQGISA 251 (591)
T ss_pred ----------------------------------CCCHHHHHHHHHHhc--CCCCEEEEECcHHHHHHHHHHHHhCCCCE
Confidence 011223344444432 26799999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEE
Q 044798 790 RRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866 (1231)
Q Consensus 790 ~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~V 866 (1231)
..+||+++..+|..+++.|..+. + .+|++|.+.|.|||++.++.||+|++|+|+..|.|++||++|.|+...+.+
T Consensus 252 ~~~H~~l~~~~R~~i~~~F~~g~-~-~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il 326 (591)
T TIGR01389 252 LAYHAGLSNKVRAENQEDFLYDD-V-KVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEAIL 326 (591)
T ss_pred EEEECCCCHHHHHHHHHHHHcCC-C-cEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceEEE
Confidence 99999999999999999999874 4 457889999999999999999999999999999999999999997665543
No 41
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.91 E-value=9e-23 Score=253.39 Aligned_cols=305 Identities=15% Similarity=0.132 Sum_probs=207.9
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeE
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHV 478 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV 478 (1231)
..++|+|.+++.-+ ..+..+++..+||.|||+..+..+. . ..+.+|||+|. .|+.||...+... +..+
T Consensus 24 ~~~r~~Q~~ai~~i----l~g~dvlv~apTGsGKTl~y~lpal--~---~~g~tlVisPl~sL~~dqv~~l~~~--gi~~ 92 (607)
T PRK11057 24 QQFRPGQQEIIDAV----LSGRDCLVVMPTGGGKSLCYQIPAL--V---LDGLTLVVSPLISLMKDQVDQLLAN--GVAA 92 (607)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCchHHHHHHHHHH--H---cCCCEEEEecHHHHHHHHHHHHHHc--CCcE
Confidence 35899999999876 4577899999999999987543332 2 13579999995 8888999988865 3445
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHH--HHHhhhhcC
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLR--LLGEKLLDV 556 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr--~~~~~L~~~ 556 (1231)
..+++....... ............+++++|++.+. .....+...
T Consensus 93 ~~~~s~~~~~~~----------------------------------~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~ 138 (607)
T PRK11057 93 ACLNSTQTREQQ----------------------------------LEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHW 138 (607)
T ss_pred EEEcCCCCHHHH----------------------------------HHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhC
Confidence 555443221100 01122222345679999999885 334456666
Q ss_pred CccEEEEeCCcccCCcch-------HHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhcccc
Q 044798 557 EWGYAVLDEGHRIRNPNA-------EISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~~S-------k~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI 629 (1231)
.+++||+||||.+-..+. .+......+.....++||||+-.....++...+.+-.|..+ ...|.
T Consensus 139 ~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~------~~~~~--- 209 (607)
T PRK11057 139 NPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ------ISSFD--- 209 (607)
T ss_pred CCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEE------ECCCC---
Confidence 789999999999865332 12222233345567899999866554555444332211100 00000
Q ss_pred ccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCc
Q 044798 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSR 709 (1231)
Q Consensus 630 ~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~ 709 (1231)
-|.. .+.+.-
T Consensus 210 ------------------------------------------r~nl-~~~v~~--------------------------- 219 (607)
T PRK11057 210 ------------------------------------------RPNI-RYTLVE--------------------------- 219 (607)
T ss_pred ------------------------------------------CCcc-eeeeee---------------------------
Confidence 0000 000000
Q ss_pred chhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcE
Q 044798 710 NSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEY 789 (1231)
Q Consensus 710 ~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~ 789 (1231)
...++..+..++.. ..+.++||||.++...+.+...|...|+.+
T Consensus 220 ----------------------------------~~~~~~~l~~~l~~--~~~~~~IIFc~tr~~~e~la~~L~~~g~~v 263 (607)
T PRK11057 220 ----------------------------------KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQSRGISA 263 (607)
T ss_pred ----------------------------------ccchHHHHHHHHHh--cCCCCEEEEECcHHHHHHHHHHHHhCCCCE
Confidence 00111223333332 346799999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEE
Q 044798 790 RRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866 (1231)
Q Consensus 790 ~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~V 866 (1231)
..+||.++..+|..+++.|..+ .+.| |++|.+.|+|||+++++.||+||+|.++..|.|++||++|.|....+.+
T Consensus 264 ~~~Ha~l~~~~R~~i~~~F~~g-~~~V-LVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~il 338 (607)
T PRK11057 264 AAYHAGLDNDVRADVQEAFQRD-DLQI-VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (607)
T ss_pred EEecCCCCHHHHHHHHHHHHCC-CCCE-EEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCCCCceEEE
Confidence 9999999999999999999987 4555 7789999999999999999999999999999999999999997655433
No 42
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=1.3e-23 Score=239.32 Aligned_cols=338 Identities=22% Similarity=0.391 Sum_probs=240.0
Q ss_pred hhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcC--C
Q 044798 399 FNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYP--S 475 (1231)
Q Consensus 399 ~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p--~ 475 (1231)
...|+|||..++.-|.-.- ..+.||+.-.+|.|||+..|..++.+ .+.+||+|-. .-+.||..+|..|.. +
T Consensus 300 st~iRpYQEksL~KMFGNg-RARSGiIVLPCGAGKtLVGvTAa~ti-----kK~clvLcts~VSVeQWkqQfk~wsti~d 373 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKTLVGVTAACTI-----KKSCLVLCTSAVSVEQWKQQFKQWSTIQD 373 (776)
T ss_pred ccccCchHHHHHHHHhCCC-cccCceEEEecCCCCceeeeeeeeee-----cccEEEEecCccCHHHHHHHHHhhcccCc
Confidence 4579999999999885421 23478999999999999877665544 4789999996 458999999999973 3
Q ss_pred CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHH--------
Q 044798 476 FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLR-------- 547 (1231)
Q Consensus 476 lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr-------- 547 (1231)
-.++.+....+. ....+.+|+|+||.++.
T Consensus 374 ~~i~rFTsd~Ke-------------------------------------------~~~~~~gvvvsTYsMva~t~kRS~e 410 (776)
T KOG1123|consen 374 DQICRFTSDAKE-------------------------------------------RFPSGAGVVVTTYSMVAYTGKRSHE 410 (776)
T ss_pred cceEEeeccccc-------------------------------------------cCCCCCcEEEEeeehhhhcccccHH
Confidence 344554432211 12356789999999983
Q ss_pred --HHHhhhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCC--hHHHHHhhhhh-cCCCCCChhHHH
Q 044798 548 --LLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNK--LSELWSLFDFV-FPGKLGVLPVFE 622 (1231)
Q Consensus 548 --~~~~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNn--l~EL~SLl~FL-~P~~lg~~~~F~ 622 (1231)
..++.|....|+++||||.|-+ |.....+.+.-+.+..+|.||||-+... +.+ ++|| .|..+.. .|.
T Consensus 411 aek~m~~l~~~EWGllllDEVHvv--PA~MFRRVlsiv~aHcKLGLTATLvREDdKI~D----LNFLIGPKlYEA--nWm 482 (776)
T KOG1123|consen 411 AEKIMDFLRGREWGLLLLDEVHVV--PAKMFRRVLSIVQAHCKLGLTATLVREDDKITD----LNFLIGPKLYEA--NWM 482 (776)
T ss_pred HHHHHHHHhcCeeeeEEeehhccc--hHHHHHHHHHHHHHHhhccceeEEeeccccccc----cceeecchhhhc--cHH
Confidence 3456788899999999999998 5544555666668889999999998652 333 3443 3332210 010
Q ss_pred HhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHH
Q 044798 623 AEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVE 702 (1231)
Q Consensus 623 ~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~ 702 (1231)
. +... ..+....-..|||+||++ +|+.++......
T Consensus 483 d-----L~~k-------------------------------------GhIA~VqCaEVWCpMt~e---Fy~eYL~~~t~k 517 (776)
T KOG1123|consen 483 D-----LQKK-------------------------------------GHIAKVQCAEVWCPMTPE---FYREYLRENTRK 517 (776)
T ss_pred H-----HHhC-------------------------------------CceeEEeeeeeecCCCHH---HHHHHHhhhhhh
Confidence 0 0000 122334455699999986 566666532211
Q ss_pred HHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHH
Q 044798 703 QILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFL 782 (1231)
Q Consensus 703 ~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L 782 (1231)
.++ |+ +. .-.|.++..=||+.+...|+|+|||+...-.|....--|
T Consensus 518 r~l------Ly-------vM---------------------NP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl 563 (776)
T KOG1123|consen 518 RML------LY-------VM---------------------NPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKL 563 (776)
T ss_pred hhe------ee-------ec---------------------CcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHc
Confidence 111 10 11 135778888888888888999999998876655444333
Q ss_pred HHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCC-CcchHHHHHHhHHhhCCc
Q 044798 783 IASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDW-NPSTDVQARERAWRIGQK 861 (1231)
Q Consensus 783 ~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~W-NPs~d~QAigRa~RiGQk 861 (1231)
|-+ .|.|.|++.+|.+++..|+.++.+.-+.+ ++||-..++|+.||.+|...... +-..+.||.||+-|....
T Consensus 564 ---~Kp--fIYG~Tsq~ERm~ILqnFq~n~~vNTIFl-SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~ 637 (776)
T KOG1123|consen 564 ---GKP--FIYGPTSQNERMKILQNFQTNPKVNTIFL-SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKR 637 (776)
T ss_pred ---CCc--eEECCCchhHHHHHHHhcccCCccceEEE-eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhc
Confidence 334 48999999999999999999988876555 58999999999999999988765 556788999999998633
Q ss_pred c----cEEEEEEEeCCCHHHH
Q 044798 862 Q----DVTVYRLITRGTIEEK 878 (1231)
Q Consensus 862 k----~V~VYRLit~gTIEEk 878 (1231)
. +++.|-|+..+|.|-.
T Consensus 638 ~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123|consen 638 NDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred CccccceeeeeeeecchHHHH
Confidence 3 3899999999998753
No 43
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=7.6e-23 Score=249.02 Aligned_cols=309 Identities=20% Similarity=0.278 Sum_probs=214.0
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhh--cCCCCc-EEEEeCC-cchHHHHHHHHHHcC--
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF--SNMYKP-SIVVCPV-TLLRQWKREAEKWYP-- 474 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~--s~~~kp-vLIV~P~-sLl~QW~~E~~kw~p-- 474 (1231)
...|.|..++.-+ ..+...|..+.+|+|||...+..+..... .....+ +||++|+ .|..|..+++.++..
T Consensus 51 ~pt~IQ~~~IP~~----l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 51 EPTPIQLAAIPLI----LAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNL 126 (513)
T ss_pred CCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhc
Confidence 3569999999776 46789999999999999885544444333 222223 9999996 778888888888763
Q ss_pred -CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh-
Q 044798 475 -SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK- 552 (1231)
Q Consensus 475 -~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~- 552 (1231)
.+++..+.|+...... . ..+..+.+|||.|++.+..+...
T Consensus 127 ~~~~~~~i~GG~~~~~q-------------------------------------~-~~l~~~~~ivVaTPGRllD~i~~~ 168 (513)
T COG0513 127 GGLRVAVVYGGVSIRKQ-------------------------------------I-EALKRGVDIVVATPGRLLDLIKRG 168 (513)
T ss_pred CCccEEEEECCCCHHHH-------------------------------------H-HHHhcCCCEEEECccHHHHHHHcC
Confidence 5677777766432111 1 22333579999999999877653
Q ss_pred -hhcCCccEEEEeCCcccCCcch--HHHHHHHhccc-ccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccc
Q 044798 553 -LLDVEWGYAVLDEGHRIRNPNA--EISLVCKQLQT-VHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP 628 (1231)
Q Consensus 553 -L~~~~wd~VILDEAH~IKN~~S--k~skalk~L~t-~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~p 628 (1231)
+......++|||||.+|.+.+- .+...+..+.. ...++.|||
T Consensus 169 ~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT---------------------------------- 214 (513)
T COG0513 169 KLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSAT---------------------------------- 214 (513)
T ss_pred CcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecC----------------------------------
Confidence 5566788999999999977641 22233333322 122334444
Q ss_pred cccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcC
Q 044798 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGS 708 (1231)
Q Consensus 629 I~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~ 708 (1231)
|++..+.+-..++.
T Consensus 215 -------------------------------------------------------~~~~i~~l~~~~l~----------- 228 (513)
T COG0513 215 -------------------------------------------------------MPDDIRELARRYLN----------- 228 (513)
T ss_pred -------------------------------------------------------CCHHHHHHHHHHcc-----------
Confidence 33322222222211
Q ss_pred cchhHHHHHHHHHhCChhhhhhhhh------cCC-CCCCCCCc-chHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHH
Q 044798 709 RNSLYGIDVMRKICNHPDLLEREQS------CQI-PDYGNPER-SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILES 780 (1231)
Q Consensus 709 ~~~l~~i~~LRkicnHPdLl~~~~~------~~~-~d~~~~~~-S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~ 780 (1231)
+|..+..... ..+ ..+..... ..|+..|..+|...... ++||||..+..++.|..
T Consensus 229 ---------------~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~--~~IVF~~tk~~~~~l~~ 291 (513)
T COG0513 229 ---------------DPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEG--RVIVFVRTKRLVEELAE 291 (513)
T ss_pred ---------------CCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCC--eEEEEeCcHHHHHHHHH
Confidence 1110000000 000 00011111 25888898888865433 79999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCC
Q 044798 781 FLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQ 860 (1231)
Q Consensus 781 ~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQ 860 (1231)
.|...|+++..|||++++.+|...++.|+++ .+.| |++|+++++||++.+.++||+||+|.++..|+||+||++|.|.
T Consensus 292 ~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g-~~~v-LVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG~ 369 (513)
T COG0513 292 SLRKRGFKVAALHGDLPQEERDRALEKFKDG-ELRV-LVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAGR 369 (513)
T ss_pred HHHHCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCE-EEEechhhccCCccccceeEEccCCCCHHHheeccCccccCCC
Confidence 9999999999999999999999999999977 4444 7899999999999999999999999999999999999999994
Q ss_pred cccEEEEEEEeC
Q 044798 861 KQDVTVYRLITR 872 (1231)
Q Consensus 861 kk~V~VYRLit~ 872 (1231)
+- ..+.|++.
T Consensus 370 ~G--~ai~fv~~ 379 (513)
T COG0513 370 KG--VAISFVTE 379 (513)
T ss_pred CC--eEEEEeCc
Confidence 43 44456665
No 44
>PTZ00424 helicase 45; Provisional
Probab=99.91 E-value=1.4e-22 Score=239.46 Aligned_cols=329 Identities=16% Similarity=0.191 Sum_probs=212.5
Q ss_pred ccCCcccChhhh--------hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhh-cCCCCcEEEEeC
Q 044798 388 LEGGLKIPESIF--------NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF-SNMYKPSIVVCP 458 (1231)
Q Consensus 388 ~~~~~~iP~~i~--------~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~-s~~~kpvLIV~P 458 (1231)
.+..+.+++.+. ..+.|+|..++..+ ..+...|+..++|+|||+.++..+..... ......+|||+|
T Consensus 29 ~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i----~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~P 104 (401)
T PTZ00424 29 SFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPI----LDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAP 104 (401)
T ss_pred CHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECC
Confidence 344455666664 34789999999887 45678899999999999886544433322 223457999999
Q ss_pred C-cchHHHHHHHHHHcCCC--eEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCC
Q 044798 459 V-TLLRQWKREAEKWYPSF--HVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSE 535 (1231)
Q Consensus 459 ~-sLl~QW~~E~~kw~p~l--rV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~ 535 (1231)
. .|+.|+.+.+....... .+..+.+..... . .. ..+...
T Consensus 105 t~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~---------------------------------~----~~-~~~~~~ 146 (401)
T PTZ00424 105 TRELAQQIQKVVLALGDYLKVRCHACVGGTVVR---------------------------------D----DI-NKLKAG 146 (401)
T ss_pred CHHHHHHHHHHHHHHhhhcCceEEEEECCcCHH---------------------------------H----HH-HHHcCC
Confidence 5 77888888877776433 333333322100 0 01 112344
Q ss_pred CCEEEeCHHHHHHHHh--hhhcCCccEEEEeCCcccCCcc--hHHHHHHHhccc-ccEEEecccCccCChHHHHHhhhhh
Q 044798 536 SGLLITTYEQLRLLGE--KLLDVEWGYAVLDEGHRIRNPN--AEISLVCKQLQT-VHRIIMTGAPIQNKLSELWSLFDFV 610 (1231)
Q Consensus 536 ~~VvItTYe~Lr~~~~--~L~~~~wd~VILDEAH~IKN~~--Sk~skalk~L~t-~~RllLTGTPiqNnl~EL~SLl~FL 610 (1231)
.+|+|+|++.+..... .+....+++||+||+|++.... ..+...++.+.. ...+++|||+-. .+.++.. .|+
T Consensus 147 ~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~~~--~~~ 223 (401)
T PTZ00424 147 VHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLPPDVQVALFSATMPN-EILELTT--KFM 223 (401)
T ss_pred CCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHHHHHhhCCCCcEEEEEEecCCH-HHHHHHH--HHc
Confidence 6899999999865443 2334568899999999986533 344555566644 456789999632 2111111 000
Q ss_pred cCCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHH
Q 044798 611 FPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRA 690 (1231)
Q Consensus 611 ~P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~ 690 (1231)
..|...- +. ...+ .+.......+.+ ...
T Consensus 224 ---------------~~~~~~~----------------------------~~--~~~~--~~~~~~~~~~~~--~~~--- 251 (401)
T PTZ00424 224 ---------------RDPKRIL----------------------------VK--KDEL--TLEGIRQFYVAV--EKE--- 251 (401)
T ss_pred ---------------CCCEEEE----------------------------eC--CCCc--ccCCceEEEEec--ChH---
Confidence 0000000 00 0000 000001111111 100
Q ss_pred HHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEec
Q 044798 691 VYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQ 770 (1231)
Q Consensus 691 lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ 770 (1231)
..+...+..++.. ....++||||.
T Consensus 252 ------------------------------------------------------~~~~~~l~~~~~~--~~~~~~ivF~~ 275 (401)
T PTZ00424 252 ------------------------------------------------------EWKFDTLCDLYET--LTITQAIIYCN 275 (401)
T ss_pred ------------------------------------------------------HHHHHHHHHHHHh--cCCCeEEEEec
Confidence 0122223333322 12458999999
Q ss_pred cHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHH
Q 044798 771 TQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQ 850 (1231)
Q Consensus 771 ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~Q 850 (1231)
++..++.+...|...++.+..++|.++..+|..+++.|+++ .+.| |++|+++++|||++.++.||+||++.++..|.|
T Consensus 276 t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g-~~~v-LvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~q 353 (401)
T PTZ00424 276 TRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG-STRV-LITTDLLARGIDVQQVSLVINYDLPASPENYIH 353 (401)
T ss_pred CcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCE-EEEcccccCCcCcccCCEEEEECCCCCHHHEee
Confidence 99999999999999999999999999999999999999987 4555 788999999999999999999999999999999
Q ss_pred HHHhHHhhCCcccEEEEEEEeCC
Q 044798 851 ARERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 851 AigRa~RiGQkk~V~VYRLit~g 873 (1231)
++||++|.|.. -.+|.|++..
T Consensus 354 r~GRagR~g~~--G~~i~l~~~~ 374 (401)
T PTZ00424 354 RIGRSGRFGRK--GVAINFVTPD 374 (401)
T ss_pred cccccccCCCC--ceEEEEEcHH
Confidence 99999999864 3455566554
No 45
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.89 E-value=3.9e-21 Score=239.74 Aligned_cols=305 Identities=17% Similarity=0.191 Sum_probs=200.4
Q ss_pred hchHHHHHHHHHHHHHHcCC--CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcC--C
Q 044798 401 NLFDYQKVGVQWLWELHCQR--AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYP--S 475 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~--~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p--~ 475 (1231)
.|.++|..++..+..-.... ...+|..++|+|||+.++..+...... ...+||++|. .|..||.+++.+|++ +
T Consensus 235 ~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--g~qvlilaPT~~LA~Q~~~~~~~l~~~~g 312 (630)
T TIGR00643 235 KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--GYQVALMAPTEILAEQHYNSLRNLLAPLG 312 (630)
T ss_pred CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--CCcEEEECCHHHHHHHHHHHHHHHhcccC
Confidence 68999999999987654332 357999999999999876554444333 4589999996 777899999999987 4
Q ss_pred CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhc
Q 044798 476 FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLD 555 (1231)
Q Consensus 476 lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~ 555 (1231)
+++.+++|+...... ............+|+|+|+..+... +.-
T Consensus 313 i~v~lltg~~~~~~r----------------------------------~~~~~~i~~g~~~IiVgT~~ll~~~---~~~ 355 (630)
T TIGR00643 313 IEVALLTGSLKGKRR----------------------------------KELLETIASGQIHLVVGTHALIQEK---VEF 355 (630)
T ss_pred cEEEEEecCCCHHHH----------------------------------HHHHHHHhCCCCCEEEecHHHHhcc---ccc
Confidence 788888876542211 0122333345579999999987542 222
Q ss_pred CCccEEEEeCCcccCCcchHHHHHHHhcc---cccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccC
Q 044798 556 VEWGYAVLDEGHRIRNPNAEISLVCKQLQ---TVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVG 632 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN~~Sk~skalk~L~---t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g 632 (1231)
.+.++||+||+|++-- .+......... ..+.++|||||+...+.- .+...+..
T Consensus 356 ~~l~lvVIDEaH~fg~--~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l--~~~~~l~~-------------------- 411 (630)
T TIGR00643 356 KRLALVIIDEQHRFGV--EQRKKLREKGQGGFTPHVLVMSATPIPRTLAL--TVYGDLDT-------------------- 411 (630)
T ss_pred cccceEEEechhhccH--HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHH--HhcCCcce--------------------
Confidence 4678999999999732 12222222333 578899999998643221 00000000
Q ss_pred CCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCce--EEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcc
Q 044798 633 GYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKT--EHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRN 710 (1231)
Q Consensus 633 ~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~--e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~ 710 (1231)
.+...+|+.. ....++.....
T Consensus 412 ----------------------------------~~i~~~p~~r~~i~~~~~~~~~~----------------------- 434 (630)
T TIGR00643 412 ----------------------------------SIIDELPPGRKPITTVLIKHDEK----------------------- 434 (630)
T ss_pred ----------------------------------eeeccCCCCCCceEEEEeCcchH-----------------------
Confidence 0001122211 11111111100
Q ss_pred hhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccH--------HHHHHHHHHH
Q 044798 711 SLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQ--------QMLDILESFL 782 (1231)
Q Consensus 711 ~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~--------~~LdiLe~~L 782 (1231)
..+...+......|++++|||... ..+..+...|
T Consensus 435 --------------------------------------~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L 476 (630)
T TIGR00643 435 --------------------------------------DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERL 476 (630)
T ss_pred --------------------------------------HHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHH
Confidence 112222233334577888888654 2334444555
Q ss_pred HH--cCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCC-CcchHHHHHHhHHhhC
Q 044798 783 IA--SGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDW-NPSTDVQARERAWRIG 859 (1231)
Q Consensus 783 ~~--~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~W-NPs~d~QAigRa~RiG 859 (1231)
.. .++.+..+||.|+..+|..+++.|.++ .+. +|++|.+.++|+|++.++.||+++++. +.+.+.|++||++|.|
T Consensus 477 ~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g-~~~-ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g 554 (630)
T TIGR00643 477 KKAFPKYNVGLLHGRMKSDEKEAVMEEFREG-EVD-ILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGD 554 (630)
T ss_pred HhhCCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCC-EEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCC
Confidence 44 378999999999999999999999987 444 477889999999999999999999885 6788999999999998
Q ss_pred CcccEE
Q 044798 860 QKQDVT 865 (1231)
Q Consensus 860 Qkk~V~ 865 (1231)
..-.|.
T Consensus 555 ~~g~~i 560 (630)
T TIGR00643 555 HQSYCL 560 (630)
T ss_pred CCcEEE
Confidence 655443
No 46
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.89 E-value=4.1e-21 Score=242.60 Aligned_cols=333 Identities=14% Similarity=0.157 Sum_probs=215.9
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHc-CCCe
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWY-PSFH 477 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~-p~lr 477 (1231)
..|+|||.+++..+ ..+.+.|+...||+|||+..+..+...........+|||+|. .|..|-..++.++. .+++
T Consensus 35 ~~p~~~Q~~ai~~i----l~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~ 110 (742)
T TIGR03817 35 HRPWQHQARAAELA----HAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVR 110 (742)
T ss_pred CcCCHHHHHHHHHH----HCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeE
Confidence 35899999999877 567899999999999999866554443333445679999995 77788888888875 3567
Q ss_pred EEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh-----
Q 044798 478 VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK----- 552 (1231)
Q Consensus 478 V~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~----- 552 (1231)
+.+++|...... ...+....+|+|+|++++....-.
T Consensus 111 v~~~~Gdt~~~~---------------------------------------r~~i~~~~~IivtTPd~L~~~~L~~~~~~ 151 (742)
T TIGR03817 111 PATYDGDTPTEE---------------------------------------RRWAREHARYVLTNPDMLHRGILPSHARW 151 (742)
T ss_pred EEEEeCCCCHHH---------------------------------------HHHHhcCCCEEEEChHHHHHhhccchhHH
Confidence 777776543210 011233468999999998632110
Q ss_pred -hhcCCccEEEEeCCcccCC-cchHHHHHHHhcc--------cccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHH
Q 044798 553 -LLDVEWGYAVLDEGHRIRN-PNAEISLVCKQLQ--------TVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFE 622 (1231)
Q Consensus 553 -L~~~~wd~VILDEAH~IKN-~~Sk~skalk~L~--------t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~ 622 (1231)
..-.+..+||+||||.+.+ ..+.+...+..++ ....+++|||. +++.++. .++.
T Consensus 152 ~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi--~n~~~~~---~~l~----------- 215 (742)
T TIGR03817 152 ARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATT--ADPAAAA---SRLI----------- 215 (742)
T ss_pred HHHHhcCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCC--CCHHHHH---HHHc-----------
Confidence 0123568999999999976 3445444444442 23468899995 2334431 1111
Q ss_pred HhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHh-hcCCCceEEEEEecCCHHHHHHHHHHHhhHHH
Q 044798 623 AEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVN-AQLPKKTEHVLFCSLTEEQRAVYRAFLASSEV 701 (1231)
Q Consensus 623 ~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~-~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~ 701 (1231)
..|+.. +. ...|.....+.+...... . .
T Consensus 216 ---g~~~~~------------------------------------i~~~~~~~~~~~~~~~~p~~~-----~-~------ 244 (742)
T TIGR03817 216 ---GAPVVA------------------------------------VTEDGSPRGARTVALWEPPLT-----E-L------ 244 (742)
T ss_pred ---CCCeEE------------------------------------ECCCCCCcCceEEEEecCCcc-----c-c------
Confidence 111100 00 001111111111111100 0 0
Q ss_pred HHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHH
Q 044798 702 EQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESF 781 (1231)
Q Consensus 702 ~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~ 781 (1231)
.+... .+ ........+...|..++. .+.++||||+++.+.+.|...
T Consensus 245 ----~~~~~-------------~~-------------~r~~~~~~~~~~l~~l~~----~~~~~IVF~~sr~~ae~l~~~ 290 (742)
T TIGR03817 245 ----TGENG-------------AP-------------VRRSASAEAADLLADLVA----EGARTLTFVRSRRGAELVAAI 290 (742)
T ss_pred ----ccccc-------------cc-------------cccchHHHHHHHHHHHHH----CCCCEEEEcCCHHHHHHHHHH
Confidence 00000 00 000001224444444443 478999999999999999998
Q ss_pred HHHc--------CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHH
Q 044798 782 LIAS--------GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARE 853 (1231)
Q Consensus 782 L~~~--------Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAig 853 (1231)
|... +.++..++|++++.+|..+.+.|.++ .+. +|++|+++++|||+...+.||+|+.|-++..|+||+|
T Consensus 291 l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G-~i~-vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiG 368 (742)
T TIGR03817 291 ARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDG-ELL-GVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAG 368 (742)
T ss_pred HHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcC-Cce-EEEECchHhccCCcccccEEEEeCCCCCHHHHHHhcc
Confidence 8753 56788999999999999999999998 454 4789999999999999999999999999999999999
Q ss_pred hHHhhCCcccEEEEEEEeCCCHHHHHH
Q 044798 854 RAWRIGQKQDVTVYRLITRGTIEEKVY 880 (1231)
Q Consensus 854 Ra~RiGQkk~V~VYRLit~gTIEEkIy 880 (1231)
|++|.|+.-- ++-++..+..|..++
T Consensus 369 RaGR~G~~g~--ai~v~~~~~~d~~~~ 393 (742)
T TIGR03817 369 RAGRRGQGAL--VVLVARDDPLDTYLV 393 (742)
T ss_pred ccCCCCCCcE--EEEEeCCChHHHHHH
Confidence 9999997643 333455555665543
No 47
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.88 E-value=3.8e-21 Score=242.65 Aligned_cols=309 Identities=15% Similarity=0.115 Sum_probs=206.2
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeE
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHV 478 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV 478 (1231)
..++|+|.++|..+ ..+..+|+...+|.|||+.....+.. ..+.+|||+|. .|+.++...+... ++.+
T Consensus 459 ~sFRp~Q~eaI~ai----L~GrDVLVimPTGSGKSLcYQLPAL~-----~~GiTLVISPLiSLmqDQV~~L~~~--GI~A 527 (1195)
T PLN03137 459 HSFRPNQREIINAT----MSGYDVFVLMPTGGGKSLTYQLPALI-----CPGITLVISPLVSLIQDQIMNLLQA--NIPA 527 (1195)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEEcCCCccHHHHHHHHHHH-----cCCcEEEEeCHHHHHHHHHHHHHhC--CCeE
Confidence 45899999999876 46788999999999999875443322 23689999995 7777666666553 4556
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhh--cCCCCEEEeCHHHHHH---HHhh-
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVL--RSESGLLITTYEQLRL---LGEK- 552 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~--~~~~~VvItTYe~Lr~---~~~~- 552 (1231)
..+.++........ .+.... ....+|+++|++.+.. ....
T Consensus 528 a~L~s~~s~~eq~~----------------------------------ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L 573 (1195)
T PLN03137 528 ASLSAGMEWAEQLE----------------------------------ILQELSSEYSKYKLLYVTPEKVAKSDSLLRHL 573 (1195)
T ss_pred EEEECCCCHHHHHH----------------------------------HHHHHHhcCCCCCEEEEChHHhhcchHHHHHH
Confidence 55555433211110 111111 1457899999998742 1222
Q ss_pred --hh-cCCccEEEEeCCcccCCcchH-------HHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHH
Q 044798 553 --LL-DVEWGYAVLDEGHRIRNPNAE-------ISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFE 622 (1231)
Q Consensus 553 --L~-~~~wd~VILDEAH~IKN~~Sk-------~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~ 622 (1231)
+. ...+.+|||||||.+-..+.. +......+.....++||||.......++...+.+..+- .|.
T Consensus 574 ~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~------vfr 647 (1195)
T PLN03137 574 ENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCV------VFR 647 (1195)
T ss_pred HhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcE------Eee
Confidence 22 234789999999998654321 12233344556678999998766555555444321110 011
Q ss_pred HhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHH
Q 044798 623 AEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVE 702 (1231)
Q Consensus 623 ~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~ 702 (1231)
..|. -|. ..+.+. . .. .
T Consensus 648 ~Sf~---------------------------------------------RpN-L~y~Vv-~-k~--k------------- 664 (1195)
T PLN03137 648 QSFN---------------------------------------------RPN-LWYSVV-P-KT--K------------- 664 (1195)
T ss_pred cccC---------------------------------------------ccc-eEEEEe-c-cc--h-------------
Confidence 0000 011 011110 0 00 0
Q ss_pred HHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHH
Q 044798 703 QILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFL 782 (1231)
Q Consensus 703 ~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L 782 (1231)
..+..|..++... ..+...||||.++...+.|...|
T Consensus 665 -------------------------------------------k~le~L~~~I~~~-~~~esgIIYC~SRke~E~LAe~L 700 (1195)
T PLN03137 665 -------------------------------------------KCLEDIDKFIKEN-HFDECGIIYCLSRMDCEKVAERL 700 (1195)
T ss_pred -------------------------------------------hHHHHHHHHHHhc-ccCCCceeEeCchhHHHHHHHHH
Confidence 0001122222211 11457899999999999999999
Q ss_pred HHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcc
Q 044798 783 IASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQ 862 (1231)
Q Consensus 783 ~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk 862 (1231)
...|+.+..+||+++..+|..+++.|..+ .+.| |++|.+.|+|||++.++.||+|++|.++..|.|++||++|.|+.-
T Consensus 701 ~~~Gika~~YHAGLs~eeR~~vqe~F~~G-ei~V-LVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG~~g 778 (1195)
T PLN03137 701 QEFGHKAAFYHGSMDPAQRAFVQKQWSKD-EINI-ICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRS 778 (1195)
T ss_pred HHCCCCeeeeeCCCCHHHHHHHHHHHhcC-CCcE-EEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCCCCc
Confidence 99999999999999999999999999998 4555 778999999999999999999999999999999999999999887
Q ss_pred cEEEEE
Q 044798 863 DVTVYR 868 (1231)
Q Consensus 863 ~V~VYR 868 (1231)
.+..|+
T Consensus 779 ~cILly 784 (1195)
T PLN03137 779 SCVLYY 784 (1195)
T ss_pred eEEEEe
Confidence 765554
No 48
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.88 E-value=8e-21 Score=238.63 Aligned_cols=307 Identities=18% Similarity=0.199 Sum_probs=202.2
Q ss_pred hchHHHHHHHHHHHHHHcC--CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCC--
Q 044798 401 NLFDYQKVGVQWLWELHCQ--RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPS-- 475 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~--~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~-- 475 (1231)
.|.++|..++.-+..-... ....+|..++|+|||+.++..+...... ...+||++|. .|..|+.+.|.+|++.
T Consensus 261 ~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--g~q~lilaPT~~LA~Q~~~~l~~l~~~~~ 338 (681)
T PRK10917 261 ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--GYQAALMAPTEILAEQHYENLKKLLEPLG 338 (681)
T ss_pred CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc--CCeEEEEeccHHHHHHHHHHHHHHHhhcC
Confidence 5899999999988764432 2367999999999999877555444332 4579999996 7788999999999865
Q ss_pred CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhc
Q 044798 476 FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLD 555 (1231)
Q Consensus 476 lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~ 555 (1231)
+++.+++|........ ...........+|+|+|+..+... +.-
T Consensus 339 i~v~ll~G~~~~~~r~----------------------------------~~~~~l~~g~~~IvVgT~~ll~~~---v~~ 381 (681)
T PRK10917 339 IRVALLTGSLKGKERR----------------------------------EILEAIASGEADIVIGTHALIQDD---VEF 381 (681)
T ss_pred cEEEEEcCCCCHHHHH----------------------------------HHHHHHhCCCCCEEEchHHHhccc---chh
Confidence 6788888765422111 122233334579999999887542 222
Q ss_pred CCccEEEEeCCcccCCcchHHHHHHHhc-ccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCC
Q 044798 556 VEWGYAVLDEGHRIRNPNAEISLVCKQL-QTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGY 634 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN~~Sk~skalk~L-~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~ 634 (1231)
.+.++||+||+|++- ......+... ...+.++|||||+...+. +..+ +..
T Consensus 382 ~~l~lvVIDE~Hrfg---~~qr~~l~~~~~~~~iL~~SATp~prtl~----~~~~------g~~---------------- 432 (681)
T PRK10917 382 HNLGLVIIDEQHRFG---VEQRLALREKGENPHVLVMTATPIPRTLA----MTAY------GDL---------------- 432 (681)
T ss_pred cccceEEEechhhhh---HHHHHHHHhcCCCCCEEEEeCCCCHHHHH----HHHc------CCC----------------
Confidence 367899999999972 2333333333 357789999999754321 0000 000
Q ss_pred CCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCce--EEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchh
Q 044798 635 ANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKT--EHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSL 712 (1231)
Q Consensus 635 ~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~--e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l 712 (1231)
+. .+...+|+.. ....++...
T Consensus 433 -~~-----------------------------s~i~~~p~~r~~i~~~~~~~~--------------------------- 455 (681)
T PRK10917 433 -DV-----------------------------SVIDELPPGRKPITTVVIPDS--------------------------- 455 (681)
T ss_pred -ce-----------------------------EEEecCCCCCCCcEEEEeCcc---------------------------
Confidence 00 0001122211 111111110
Q ss_pred HHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHH--------HHHHHHHHHHH
Q 044798 713 YGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQ--------MLDILESFLIA 784 (1231)
Q Consensus 713 ~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~--------~LdiLe~~L~~ 784 (1231)
+...+.+.+......|++++|||.... ....+...|..
T Consensus 456 ----------------------------------~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~ 501 (681)
T PRK10917 456 ----------------------------------RRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQE 501 (681)
T ss_pred ----------------------------------cHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHH
Confidence 011122333333356889999997432 23445555554
Q ss_pred c--CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCC-CcchHHHHHHhHHhhCCc
Q 044798 785 S--GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDW-NPSTDVQARERAWRIGQK 861 (1231)
Q Consensus 785 ~--Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~W-NPs~d~QAigRa~RiGQk 861 (1231)
. ++++..+||.|+..+|..++++|.++ .+.| |++|.+.++|+|+++++.||+++++. ..+.+.|++||++|.|..
T Consensus 502 ~~~~~~v~~lHG~m~~~eR~~i~~~F~~g-~~~I-LVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~~ 579 (681)
T PRK10917 502 AFPELRVGLLHGRMKPAEKDAVMAAFKAG-EIDI-LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAAQ 579 (681)
T ss_pred HCCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCE-EEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCCc
Confidence 4 57899999999999999999999987 4444 78899999999999999999999985 568899999999999865
Q ss_pred ccEEEEEEE
Q 044798 862 QDVTVYRLI 870 (1231)
Q Consensus 862 k~V~VYRLi 870 (1231)
- ++|.+.
T Consensus 580 g--~~ill~ 586 (681)
T PRK10917 580 S--YCVLLY 586 (681)
T ss_pred e--EEEEEE
Confidence 4 444444
No 49
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.88 E-value=9.3e-21 Score=243.56 Aligned_cols=325 Identities=15% Similarity=0.161 Sum_probs=203.6
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHH-HHhhcC------CCCcEEEEeCC-cchHHHHHH---
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLG-ALHFSN------MYKPSIVVCPV-TLLRQWKRE--- 468 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~-~L~~s~------~~kpvLIV~P~-sLl~QW~~E--- 468 (1231)
..|+|+|..++..+ ..+..+|+..+||+|||+.++..+. .+.... ....+|+|+|. .|..|+.+.
T Consensus 31 ~~~tpiQ~~Ai~~i----l~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~ 106 (876)
T PRK13767 31 GTFTPPQRYAIPLI----HEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEE 106 (876)
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 45899999999776 4677899999999999998654443 333211 12359999995 777777653
Q ss_pred ----HHHHc-------CCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCC
Q 044798 469 ----AEKWY-------PSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESG 537 (1231)
Q Consensus 469 ----~~kw~-------p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~ 537 (1231)
+..|+ +++++.+.+|...... ..+.+...++
T Consensus 107 ~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~--------------------------------------r~~~l~~~p~ 148 (876)
T PRK13767 107 PLTEIREIAKERGEELPEIRVAIRTGDTSSYE--------------------------------------KQKMLKKPPH 148 (876)
T ss_pred HHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHH--------------------------------------HHHHHhCCCC
Confidence 33443 3567777776543211 1122345679
Q ss_pred EEEeCHHHHHHHHhh--h--hcCCccEEEEeCCcccCCcc--hHHHHHHHhc-----ccccEEEecccCccCChHHHHHh
Q 044798 538 LLITTYEQLRLLGEK--L--LDVEWGYAVLDEGHRIRNPN--AEISLVCKQL-----QTVHRIIMTGAPIQNKLSELWSL 606 (1231)
Q Consensus 538 VvItTYe~Lr~~~~~--L--~~~~wd~VILDEAH~IKN~~--Sk~skalk~L-----~t~~RllLTGTPiqNnl~EL~SL 606 (1231)
|+|||++++...... + .-....+||+||+|.+-+.. ......+..| ....+|+||||.- ++.++-
T Consensus 149 IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~--~~~~va-- 224 (876)
T PRK13767 149 ILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIE--PLEEVA-- 224 (876)
T ss_pred EEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccC--CHHHHH--
Confidence 999999998654321 1 11356899999999997543 2233333333 2356799999972 333332
Q ss_pred hhhhcCCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCH
Q 044798 607 FDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTE 686 (1231)
Q Consensus 607 l~FL~P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~ 686 (1231)
.|+....... ...+... +...........+.++...
T Consensus 225 -~~L~~~~~~~-------~~r~~~i------------------------------------v~~~~~k~~~i~v~~p~~~ 260 (876)
T PRK13767 225 -KFLVGYEDDG-------EPRDCEI------------------------------------VDARFVKPFDIKVISPVDD 260 (876)
T ss_pred -HHhcCccccC-------CCCceEE------------------------------------EccCCCccceEEEeccCcc
Confidence 2322110000 0000000 0000000011111111100
Q ss_pred HHHHHHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEE
Q 044798 687 EQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVL 766 (1231)
Q Consensus 687 ~Qr~lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVL 766 (1231)
. +. .........+...|..+...+.++|
T Consensus 261 l----~~------------------------------------------------~~~~~~~~~l~~~L~~~i~~~~~~L 288 (876)
T PRK13767 261 L----IH------------------------------------------------TPAEEISEALYETLHELIKEHRTTL 288 (876)
T ss_pred c----cc------------------------------------------------cccchhHHHHHHHHHHHHhcCCCEE
Confidence 0 00 0000011122233333344577999
Q ss_pred EEeccHHHHHHHHHHHHHc------CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcC
Q 044798 767 LFAQTQQMLDILESFLIAS------GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFD 840 (1231)
Q Consensus 767 VFSQ~~~~LdiLe~~L~~~------Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~D 840 (1231)
|||+++...+.+...|... +..+..+||+++..+|..+.+.|+++ .++ +|++|.+.++|||+..++.||+|+
T Consensus 289 VF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G-~i~-vLVaTs~Le~GIDip~Vd~VI~~~ 366 (876)
T PRK13767 289 IFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRG-ELK-VVVSSTSLELGIDIGYIDLVVLLG 366 (876)
T ss_pred EEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcC-CCe-EEEECChHHhcCCCCCCcEEEEeC
Confidence 9999999999999998763 46789999999999999999999998 454 578899999999999999999999
Q ss_pred CCCCcchHHHHHHhHHhh-CCcccEEEEE
Q 044798 841 PDWNPSTDVQARERAWRI-GQKQDVTVYR 868 (1231)
Q Consensus 841 p~WNPs~d~QAigRa~Ri-GQkk~V~VYR 868 (1231)
+|.++..+.||+||++|. |....-.++-
T Consensus 367 ~P~sv~~ylQRiGRaGR~~g~~~~g~ii~ 395 (876)
T PRK13767 367 SPKSVSRLLQRIGRAGHRLGEVSKGRIIV 395 (876)
T ss_pred CCCCHHHHHHhcccCCCCCCCCCcEEEEE
Confidence 999999999999999976 4444455543
No 50
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.87 E-value=9.6e-21 Score=241.87 Aligned_cols=307 Identities=17% Similarity=0.180 Sum_probs=204.3
Q ss_pred hchHHHHHHHHHHHHHHcCC--CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCC-
Q 044798 401 NLFDYQKVGVQWLWELHCQR--AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSF- 476 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~--~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~l- 476 (1231)
.+.|+|..++..+..-...+ ...+++.++|+|||..++..+...... ...+||+||+ .|+.|+.+.|.++++.+
T Consensus 451 ~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~ 528 (926)
T TIGR00580 451 EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--GKQVAVLVPTTLLAQQHFETFKERFANFP 528 (926)
T ss_pred CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--CCeEEEEeCcHHHHHHHHHHHHHHhccCC
Confidence 47899999999887643332 468999999999999876544333333 3689999996 77789999999988654
Q ss_pred -eEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhc
Q 044798 477 -HVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLD 555 (1231)
Q Consensus 477 -rV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~ 555 (1231)
++.++++....... ............+|||+|+..+.. .+.-
T Consensus 529 i~v~~Lsg~~~~~e~----------------------------------~~~~~~l~~g~~dIVIGTp~ll~~---~v~f 571 (926)
T TIGR00580 529 VTIELLSRFRSAKEQ----------------------------------NEILKELASGKIDILIGTHKLLQK---DVKF 571 (926)
T ss_pred cEEEEEeccccHHHH----------------------------------HHHHHHHHcCCceEEEchHHHhhC---CCCc
Confidence 55566654321111 112223333457899999965532 2233
Q ss_pred CCccEEEEeCCcccCCcchHHHHHHHhcc-cccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCC
Q 044798 556 VEWGYAVLDEGHRIRNPNAEISLVCKQLQ-TVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGY 634 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN~~Sk~skalk~L~-t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~ 634 (1231)
.+..+||+||+|++. ......++.+. ..+.++|||||+...+... +..+..+.
T Consensus 572 ~~L~llVIDEahrfg---v~~~~~L~~~~~~~~vL~~SATpiprtl~~~--l~g~~d~s--------------------- 625 (926)
T TIGR00580 572 KDLGLLIIDEEQRFG---VKQKEKLKELRTSVDVLTLSATPIPRTLHMS--MSGIRDLS--------------------- 625 (926)
T ss_pred ccCCEEEeecccccc---hhHHHHHHhcCCCCCEEEEecCCCHHHHHHH--HhcCCCcE---------------------
Confidence 457899999999973 33445555553 4578999999976433211 10000000
Q ss_pred CCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCce---EEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcch
Q 044798 635 ANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKT---EHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNS 711 (1231)
Q Consensus 635 ~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~---e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~ 711 (1231)
+ ...|+.. ....++..... .+
T Consensus 626 ---------------------------------~-I~~~p~~R~~V~t~v~~~~~~--~i-------------------- 649 (926)
T TIGR00580 626 ---------------------------------I-IATPPEDRLPVRTFVMEYDPE--LV-------------------- 649 (926)
T ss_pred ---------------------------------E-EecCCCCccceEEEEEecCHH--HH--------------------
Confidence 0 0001110 01111111110 00
Q ss_pred hHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc--CCcE
Q 044798 712 LYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS--GYEY 789 (1231)
Q Consensus 712 l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~--Gi~~ 789 (1231)
...++.. ...|.+++|||+....++.+...|+.. ++++
T Consensus 650 ---------------------------------------~~~i~~e-l~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v 689 (926)
T TIGR00580 650 ---------------------------------------REAIRRE-LLRGGQVFYVHNRIESIEKLATQLRELVPEARI 689 (926)
T ss_pred ---------------------------------------HHHHHHH-HHcCCeEEEEECCcHHHHHHHHHHHHhCCCCeE
Confidence 0011111 224679999999999999999999875 7899
Q ss_pred EEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCC-CCcchHHHHHHhHHhhCCcccEEEEE
Q 044798 790 RRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPD-WNPSTDVQARERAWRIGQKQDVTVYR 868 (1231)
Q Consensus 790 ~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~-WNPs~d~QAigRa~RiGQkk~V~VYR 868 (1231)
..+||.|+..+|..++.+|.++. +. +|++|.+.++|||++.++.||+++++ +..+.+.|++||++|.|.. -++|-
T Consensus 690 ~~lHG~m~~~eRe~im~~F~~Gk-~~-ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~~--g~ail 765 (926)
T TIGR00580 690 AIAHGQMTENELEEVMLEFYKGE-FQ-VLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKKK--AYAYL 765 (926)
T ss_pred EEecCCCCHHHHHHHHHHHHcCC-CC-EEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCCC--eEEEE
Confidence 99999999999999999999984 44 47889999999999999999999986 4667889999999998864 45555
Q ss_pred EEeC
Q 044798 869 LITR 872 (1231)
Q Consensus 869 Lit~ 872 (1231)
|+..
T Consensus 766 l~~~ 769 (926)
T TIGR00580 766 LYPH 769 (926)
T ss_pred EECC
Confidence 5544
No 51
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.87 E-value=1.4e-20 Score=244.32 Aligned_cols=355 Identities=15% Similarity=0.174 Sum_probs=208.7
Q ss_pred hchHHHHHHHHHHHHHHc-CCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC-CcchHHHHHHHHHHcCCCe-
Q 044798 401 NLFDYQKVGVQWLWELHC-QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP-VTLLRQWKREAEKWYPSFH- 477 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~-~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P-~sLl~QW~~E~~kw~p~lr- 477 (1231)
.|+|||.++|..+.+... ...+++|.+.+|+|||+++++++..+...+..+++||||| ..|+.||.++|..+.+...
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~~ 492 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGDQ 492 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhccccccc
Confidence 589999999987766543 3467899999999999999999888877777789999999 5899999999998743211
Q ss_pred -EEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh----
Q 044798 478 -VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK---- 552 (1231)
Q Consensus 478 -V~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~---- 552 (1231)
+.-+.+.. + +..........|+|+||+++......
T Consensus 493 ~~~~i~~i~---~-------------------------------------L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~ 532 (1123)
T PRK11448 493 TFASIYDIK---G-------------------------------------LEDKFPEDETKVHVATVQGMVKRILYSDDP 532 (1123)
T ss_pred chhhhhchh---h-------------------------------------hhhhcccCCCCEEEEEHHHHHHhhhccccc
Confidence 00000000 0 00001123458999999998654311
Q ss_pred ---hhcCCccEEEEeCCcccCCc-----------------chHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcC
Q 044798 553 ---LLDVEWGYAVLDEGHRIRNP-----------------NAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFP 612 (1231)
Q Consensus 553 ---L~~~~wd~VILDEAH~IKN~-----------------~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P 612 (1231)
+....|++||+||||+.-.. .+.....+..+. ..+|.|||||..+. .++
T Consensus 533 ~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t-~~~--------- 601 (1123)
T PRK11448 533 MDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT-TEI--------- 601 (1123)
T ss_pred cccCCCCcccEEEEECCCCCCccccccccchhccchhhhHHHHHHHHHhhcC-ccEEEEecCCccch-hHH---------
Confidence 23346899999999996311 122233333333 57899999997432 111
Q ss_pred CCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHh-HHHHHHHHHHHhhcCCCceEEEEEe----cCC-H
Q 044798 613 GKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIM-PYLLRRMKADVNAQLPKKTEHVLFC----SLT-E 686 (1231)
Q Consensus 613 ~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~-p~~LRRtK~dV~~dLP~K~e~vv~~----~Lt-~ 686 (1231)
|..|+..-. +.+.|. .|++ ..-||......+. ... .
T Consensus 602 ------------FG~pv~~Ys------------------l~eAI~DG~Lv--------~~~~p~~i~t~~~~~gi~~~~~ 643 (1123)
T PRK11448 602 ------------FGEPVYTYS------------------YREAVIDGYLI--------DHEPPIRIETRLSQEGIHFEKG 643 (1123)
T ss_pred ------------hCCeeEEee------------------HHHHHhcCCcc--------cCcCCEEEEEEecccccccccc
Confidence 112221000 111111 1110 0012222221111 011 1
Q ss_pred HHHHHHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHH-HHHHHHHHHHh-cCCe
Q 044798 687 EQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMK-VVAQVLKVWKD-QGHR 764 (1231)
Q Consensus 687 ~Qr~lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~-~L~eLLk~~~~-~g~K 764 (1231)
.+...|+.......... +.. ..-+....+-+..-.+ .... ++..+++.+.. .+.|
T Consensus 644 e~~~~~~~~~~~i~~~~-l~d--~~~~~~~~~~~~vi~~--------------------~~~~~i~~~l~~~l~~~~~~K 700 (1123)
T PRK11448 644 EEVEVINTQTGEIDLAT-LED--EVDFEVEDFNRRVITE--------------------SFNRVVCEELAKYLDPTGEGK 700 (1123)
T ss_pred chhhhcchhhhhhhhcc-CcH--HHhhhHHHHHHHHhhH--------------------HHHHHHHHHHHHHHhccCCCc
Confidence 11222221110000000 000 0000000000000001 0111 12223322221 2369
Q ss_pred EEEEeccHHHHHHHHHHHHHc------CC---cEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCE
Q 044798 765 VLLFAQTQQMLDILESFLIAS------GY---EYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANR 835 (1231)
Q Consensus 765 VLVFSQ~~~~LdiLe~~L~~~------Gi---~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~Anr 835 (1231)
+||||.+...++.+...|... ++ .+..|+|+++ ++..++++|.++. ...+|+++++.++|+|.+.+..
T Consensus 701 tiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~-~p~IlVsvdmL~TG~DvP~v~~ 777 (1123)
T PRK11448 701 TLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNER-LPNIVVTVDLLTTGIDVPSICN 777 (1123)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCC-CCeEEEEecccccCCCcccccE
Confidence 999999999998888777643 22 4567999985 5788999998864 4467889999999999999999
Q ss_pred EEEcCCCCCcchHHHHHHhHHhhCC---cccEEEEEEE
Q 044798 836 VIIFDPDWNPSTDVQARERAWRIGQ---KQDVTVYRLI 870 (1231)
Q Consensus 836 VIi~Dp~WNPs~d~QAigRa~RiGQ---kk~V~VYRLi 870 (1231)
||++.|.-++..++|++||+-|..- |....||-++
T Consensus 778 vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D~v 815 (1123)
T PRK11448 778 LVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFDAV 815 (1123)
T ss_pred EEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEehH
Confidence 9999999999999999999999854 5557787754
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.87 E-value=2.6e-20 Score=242.48 Aligned_cols=305 Identities=16% Similarity=0.174 Sum_probs=202.3
Q ss_pred hchHHHHHHHHHHHHHHcC--CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCC--
Q 044798 401 NLFDYQKVGVQWLWELHCQ--RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPS-- 475 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~--~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~-- 475 (1231)
.+.|.|..++.-+..-... ....+++.+||+|||.+++-.+..... ....+|||||+ .|..|+.+.|.+++..
T Consensus 600 ~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~--~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~ 677 (1147)
T PRK10689 600 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE--NHKQVAVLVPTTLLAQQHYDNFRDRFANWP 677 (1147)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH--cCCeEEEEeCcHHHHHHHHHHHHHhhccCC
Confidence 5789999999877553322 357899999999999986633322222 34689999997 6668899999887754
Q ss_pred CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhc
Q 044798 476 FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLD 555 (1231)
Q Consensus 476 lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~ 555 (1231)
+++.++++....... ...+........+|||+|+..+.. .+..
T Consensus 678 v~i~~l~g~~s~~e~----------------------------------~~il~~l~~g~~dIVVgTp~lL~~---~v~~ 720 (1147)
T PRK10689 678 VRIEMLSRFRSAKEQ----------------------------------TQILAEAAEGKIDILIGTHKLLQS---DVKW 720 (1147)
T ss_pred ceEEEEECCCCHHHH----------------------------------HHHHHHHHhCCCCEEEECHHHHhC---CCCH
Confidence 466666654332111 112222223457899999986642 2222
Q ss_pred CCccEEEEeCCcccCCcchHHHHHHHhcc-cccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCC
Q 044798 556 VEWGYAVLDEGHRIRNPNAEISLVCKQLQ-TVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGY 634 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN~~Sk~skalk~L~-t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~ 634 (1231)
.+++++|+||+|++. ......++.+. ....++|||||++..+.-. +..+..+. .
T Consensus 721 ~~L~lLVIDEahrfG---~~~~e~lk~l~~~~qvLl~SATpiprtl~l~--~~gl~d~~----------------~---- 775 (1147)
T PRK10689 721 KDLGLLIVDEEHRFG---VRHKERIKAMRADVDILTLTATPIPRTLNMA--MSGMRDLS----------------I---- 775 (1147)
T ss_pred hhCCEEEEechhhcc---hhHHHHHHhcCCCCcEEEEcCCCCHHHHHHH--HhhCCCcE----------------E----
Confidence 467899999999983 22334455553 4577999999987543211 00000000 0
Q ss_pred CCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCce---EEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcch
Q 044798 635 ANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKT---EHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNS 711 (1231)
Q Consensus 635 ~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~---e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~ 711 (1231)
+ ..|+.. ...+.......
T Consensus 776 ---------------------------------I--~~~p~~r~~v~~~~~~~~~~------------------------ 796 (1147)
T PRK10689 776 ---------------------------------I--ATPPARRLAVKTFVREYDSL------------------------ 796 (1147)
T ss_pred ---------------------------------E--ecCCCCCCCceEEEEecCcH------------------------
Confidence 0 001110 00011110000
Q ss_pred hHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc--CCcE
Q 044798 712 LYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS--GYEY 789 (1231)
Q Consensus 712 l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~--Gi~~ 789 (1231)
.....++..+. .+.+++|||+.+..++.+...|... ++++
T Consensus 797 -------------------------------------~~k~~il~el~-r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v 838 (1147)
T PRK10689 797 -------------------------------------VVREAILREIL-RGGQVYYLYNDVENIQKAAERLAELVPEARI 838 (1147)
T ss_pred -------------------------------------HHHHHHHHHHh-cCCeEEEEECCHHHHHHHHHHHHHhCCCCcE
Confidence 00112222222 3569999999999999999999887 7899
Q ss_pred EEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCC-CCcchHHHHHHhHHhhCCcccEEEEE
Q 044798 790 RRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPD-WNPSTDVQARERAWRIGQKQDVTVYR 868 (1231)
Q Consensus 790 ~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~-WNPs~d~QAigRa~RiGQkk~V~VYR 868 (1231)
..+||.|+..+|..++.+|.++ .+.| |++|.+.++|||++.++.||+.+++ |+...+.|++||++|.|.+- ++|-
T Consensus 839 ~~lHG~m~q~eRe~im~~Fr~G-k~~V-LVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~~g--~a~l 914 (1147)
T PRK10689 839 AIGHGQMRERELERVMNDFHHQ-RFNV-LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWL 914 (1147)
T ss_pred EEEeCCCCHHHHHHHHHHHHhc-CCCE-EEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCCce--EEEE
Confidence 9999999999999999999998 4555 7788999999999999999998775 68888999999999998764 4443
Q ss_pred EE
Q 044798 869 LI 870 (1231)
Q Consensus 869 Li 870 (1231)
+.
T Consensus 915 l~ 916 (1147)
T PRK10689 915 LT 916 (1147)
T ss_pred Ee
Confidence 43
No 53
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.86 E-value=2.3e-20 Score=214.95 Aligned_cols=354 Identities=18% Similarity=0.175 Sum_probs=226.0
Q ss_pred ccccCCcccChhhhh--------hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhh----------c
Q 044798 386 VTLEGGLKIPESIFN--------NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF----------S 447 (1231)
Q Consensus 386 ~~~~~~~~iP~~i~~--------~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~----------s 447 (1231)
+.......+|..+.. ..-|.|..++--+ .+++..|+..|+|+|||...+..|..... .
T Consensus 244 lrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~----lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~ 319 (673)
T KOG0333|consen 244 LRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLG----LQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENN 319 (673)
T ss_pred ccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccch----hccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhc
Confidence 333444446666643 3468898888744 57889999999999999653332222211 1
Q ss_pred CCCCcEEEEeCC-cchHHHHHHHHHHcCC--CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchh
Q 044798 448 NMYKPSIVVCPV-TLLRQWKREAEKWYPS--FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKW 524 (1231)
Q Consensus 448 ~~~kpvLIV~P~-sLl~QW~~E~~kw~p~--lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 524 (1231)
......+|++|+ .|..|...|-.++.-+ ++++.+.|.....
T Consensus 320 ~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~E------------------------------------ 363 (673)
T KOG0333|consen 320 IEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFE------------------------------------ 363 (673)
T ss_pred ccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchh------------------------------------
Confidence 123458999997 5666777788777633 4555444433210
Q ss_pred hHHHHhhhcCCCCEEEeCHHHHHHHHh--hhhcCCccEEEEeCCcccCCcch--HHHHHHHhcccccEEEecccCccCCh
Q 044798 525 DLLINRVLRSESGLLITTYEQLRLLGE--KLLDVEWGYAVLDEGHRIRNPNA--EISLVCKQLQTVHRIIMTGAPIQNKL 600 (1231)
Q Consensus 525 ~~~i~~~~~~~~~VvItTYe~Lr~~~~--~L~~~~wd~VILDEAH~IKN~~S--k~skalk~L~t~~RllLTGTPiqNnl 600 (1231)
.+.--+..+++|+|.|++.|....+ .|......|||+|||.++-+.+- .+.+. |+.-|..|
T Consensus 364 --Eq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~i-----------L~~mPssn-- 428 (673)
T KOG0333|consen 364 --EQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKI-----------LEQMPSSN-- 428 (673)
T ss_pred --hhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHH-----------HHhCCccc--
Confidence 0111134567999999999977654 35556788999999999966541 11111 11122211
Q ss_pred HHHHHhhhhhcCCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCC--ceEE
Q 044798 601 SELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPK--KTEH 678 (1231)
Q Consensus 601 ~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~--K~e~ 678 (1231)
+.+-. ...+....++..+. -.. ....
T Consensus 429 ------------------------------------~k~~t--de~~~~~~~~~~~~--------------~~k~yrqT~ 456 (673)
T KOG0333|consen 429 ------------------------------------AKPDT--DEKEGEERVRKNFS--------------SSKKYRQTV 456 (673)
T ss_pred ------------------------------------cCCCc--cchhhHHHHHhhcc--------------cccceeEEE
Confidence 11000 00000000111110 011 1223
Q ss_pred EEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHH
Q 044798 679 VLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVW 758 (1231)
Q Consensus 679 vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~ 758 (1231)
.+.+.|+|.-..+-+.|+....+-.+-... -++|.+- ........+.|...|+++|...
T Consensus 457 mftatm~p~verlar~ylr~pv~vtig~~g-------------k~~~rve--------Q~v~m~~ed~k~kkL~eil~~~ 515 (673)
T KOG0333|consen 457 MFTATMPPAVERLARSYLRRPVVVTIGSAG-------------KPTPRVE--------QKVEMVSEDEKRKKLIEILESN 515 (673)
T ss_pred EEecCCChHHHHHHHHHhhCCeEEEeccCC-------------CCccchh--------eEEEEecchHHHHHHHHHHHhC
Confidence 455678887766666665432110000000 0011100 0111223567889999999876
Q ss_pred HhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEE
Q 044798 759 KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVII 838 (1231)
Q Consensus 759 ~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi 838 (1231)
. ...+|||.+++..+|.|.+.|.+.||+++++||+-++++|..++..|.++. .-+|++|+|+|+||+++.+++||+
T Consensus 516 ~--~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t--~dIlVaTDvAgRGIDIpnVSlVin 591 (673)
T KOG0333|consen 516 F--DPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGT--GDILVATDVAGRGIDIPNVSLVIN 591 (673)
T ss_pred C--CCCEEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcC--CCEEEEecccccCCCCCccceeee
Confidence 3 559999999999999999999999999999999999999999999999863 345789999999999999999999
Q ss_pred cCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCC
Q 044798 839 FDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 839 ~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~g 873 (1231)
||..-+..+|.|||||++|.|+.-.++. |++..
T Consensus 592 ydmaksieDYtHRIGRTgRAGk~GtaiS--flt~~ 624 (673)
T KOG0333|consen 592 YDMAKSIEDYTHRIGRTGRAGKSGTAIS--FLTPA 624 (673)
T ss_pred cchhhhHHHHHHHhccccccccCceeEE--Eeccc
Confidence 9999999999999999999998765444 44443
No 54
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.85 E-value=3.2e-20 Score=212.02 Aligned_cols=315 Identities=19% Similarity=0.234 Sum_probs=215.1
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcC----CCC--cEEEEeCC-cc---hHHHHHHH
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN----MYK--PSIVVCPV-TL---LRQWKREA 469 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~----~~k--pvLIV~P~-sL---l~QW~~E~ 469 (1231)
..+.|-|..++..+ +.+...++-..+|+|||+..+..+....+.. ..+ ..|||+|+ .| +......|
T Consensus 27 ~~mTpVQa~tIPll----l~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F 102 (567)
T KOG0345|consen 27 EKMTPVQAATIPLL----LKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPF 102 (567)
T ss_pred cccCHHHHhhhHHH----hcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHH
Confidence 45789999999877 6788999999999999999887777765322 222 46999995 34 44455667
Q ss_pred HHHcCCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHH
Q 044798 470 EKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLL 549 (1231)
Q Consensus 470 ~kw~p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~ 549 (1231)
..++|++.+.++.|+..-. ..+....+..+.|+|.|++.|...
T Consensus 103 ~~~l~~l~~~l~vGG~~v~-------------------------------------~Di~~fkee~~nIlVgTPGRL~di 145 (567)
T KOG0345|consen 103 LEHLPNLNCELLVGGRSVE-------------------------------------EDIKTFKEEGPNILVGTPGRLLDI 145 (567)
T ss_pred HHhhhccceEEEecCccHH-------------------------------------HHHHHHHHhCCcEEEeCchhHHHH
Confidence 7777899998888874311 134444556778999999999776
Q ss_pred Hhh----hhcCCccEEEEeCCcccCCcch--HHHHHHHhcccccEEE-ecccCccCChHHHHHhhhhhcCCCCCChhHHH
Q 044798 550 GEK----LLDVEWGYAVLDEGHRIRNPNA--EISLVCKQLQTVHRII-MTGAPIQNKLSELWSLFDFVFPGKLGVLPVFE 622 (1231)
Q Consensus 550 ~~~----L~~~~wd~VILDEAH~IKN~~S--k~skalk~L~t~~Rll-LTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~ 622 (1231)
... +.-....++|||||+++...+- .+...+..|...+|-. .|||-
T Consensus 146 ~~~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq--------------------------- 198 (567)
T KOG0345|consen 146 LQREAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLFSATQ--------------------------- 198 (567)
T ss_pred HhchhhhccccccceEEecchHhHhcccHHHHHHHHHHhcccccccccccchh---------------------------
Confidence 654 5544678999999999976552 2333344444443322 23332
Q ss_pred HhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHH
Q 044798 623 AEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVE 702 (1231)
Q Consensus 623 ~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~ 702 (1231)
+.....+.+..+...
T Consensus 199 --------------------------------------------------------------~~~v~dL~raGLRNp--- 213 (567)
T KOG0345|consen 199 --------------------------------------------------------------TQEVEDLARAGLRNP--- 213 (567)
T ss_pred --------------------------------------------------------------hHHHHHHHHhhccCc---
Confidence 222222221111110
Q ss_pred HHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHH
Q 044798 703 QILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFL 782 (1231)
Q Consensus 703 ~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L 782 (1231)
...........+.|.- -...|...+...|...|+++|.... .+|+|||-.+-...++...+|
T Consensus 214 ---------v~V~V~~k~~~~tPS~-------L~~~Y~v~~a~eK~~~lv~~L~~~~--~kK~iVFF~TCasVeYf~~~~ 275 (567)
T KOG0345|consen 214 ---------VRVSVKEKSKSATPSS-------LALEYLVCEADEKLSQLVHLLNNNK--DKKCIVFFPTCASVEYFGKLF 275 (567)
T ss_pred ---------eeeeecccccccCchh-------hcceeeEecHHHHHHHHHHHHhccc--cccEEEEecCcchHHHHHHHH
Confidence 0000000000000100 0011222334578899999998743 569999988888888877777
Q ss_pred HHc--CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCC
Q 044798 783 IAS--GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQ 860 (1231)
Q Consensus 783 ~~~--Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQ 860 (1231)
... +++++.+||.|++.+|..++..|...+ .-+|++|+|+++|||+++.+.||.||||-+|+.+.||.||+.|.|.
T Consensus 276 ~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~--~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~gr 353 (567)
T KOG0345|consen 276 SRLLKKREIFSIHGKMSQKARAKVLEAFRKLS--NGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARAGR 353 (567)
T ss_pred HHHhCCCcEEEecchhcchhHHHHHHHHHhcc--CceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhccC
Confidence 654 789999999999999999999999843 4457899999999999999999999999999999999999999998
Q ss_pred cccEEEE
Q 044798 861 KQDVTVY 867 (1231)
Q Consensus 861 kk~V~VY 867 (1231)
.-.-.|+
T Consensus 354 ~G~Aivf 360 (567)
T KOG0345|consen 354 EGNAIVF 360 (567)
T ss_pred ccceEEE
Confidence 7665553
No 55
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.85 E-value=3.3e-20 Score=214.28 Aligned_cols=321 Identities=16% Similarity=0.198 Sum_probs=217.9
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCC-----cEEEEeCC-cchHHHHHHHHHHc-
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYK-----PSIVVCPV-TLLRQWKREAEKWY- 473 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~k-----pvLIV~P~-sLl~QW~~E~~kw~- 473 (1231)
.+...|..+|... .++...|.|.-+|+|||+..+..+..-+++..+. -+|||.|+ .|..|-..-+.+-.
T Consensus 91 ~~teiQ~~~Ip~a----L~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk 166 (758)
T KOG0343|consen 91 KMTEIQRDTIPMA----LQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK 166 (758)
T ss_pred cHHHHHHhhcchh----ccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh
Confidence 4677888888765 5678889999999999998666555544444343 48999996 66677666665543
Q ss_pred -CCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh
Q 044798 474 -PSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK 552 (1231)
Q Consensus 474 -p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~ 552 (1231)
..+..-++.|+... .. ... -.+..+|+|+|+++|..+++.
T Consensus 167 ~h~fSaGLiiGG~~~-k~------------------------------------E~e--Ri~~mNILVCTPGRLLQHmde 207 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKDV-KF------------------------------------ELE--RISQMNILVCTPGRLLQHMDE 207 (758)
T ss_pred ccccccceeecCchh-HH------------------------------------HHH--hhhcCCeEEechHHHHHHhhh
Confidence 23444444443221 11 111 124568999999999998875
Q ss_pred ---hhcCCccEEEEeCCcccCCcchHH--HHHHHhccc-ccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhc
Q 044798 553 ---LLDVEWGYAVLDEGHRIRNPNAEI--SLVCKQLQT-VHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFA 626 (1231)
Q Consensus 553 ---L~~~~wd~VILDEAH~IKN~~Sk~--skalk~L~t-~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~ 626 (1231)
|......++|||||++|..++-+- ...+..|.. ..-++.|||+-.+ +.+|
T Consensus 208 ~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~s-vkdL----------------------- 263 (758)
T KOG0343|consen 208 NPNFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKS-VKDL----------------------- 263 (758)
T ss_pred cCCCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChhheeeeeecccchh-HHHH-----------------------
Confidence 555678899999999997655321 122223322 2225555555321 1111
Q ss_pred cccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhh
Q 044798 627 VPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD 706 (1231)
Q Consensus 627 ~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~ 706 (1231)
T Consensus 264 -------------------------------------------------------------------------------- 263 (758)
T KOG0343|consen 264 -------------------------------------------------------------------------------- 263 (758)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcchhHHHHHHHHHhCChhhhhhh-------hhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHH
Q 044798 707 GSRNSLYGIDVMRKICNHPDLLERE-------QSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILE 779 (1231)
Q Consensus 707 ~~~~~l~~i~~LRkicnHPdLl~~~-------~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe 779 (1231)
+|....+|..+... +..-...|.......|+.+|...|+.+... |.|||-.+......+.
T Consensus 264 -----------aRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~--K~iVF~SscKqvkf~~ 330 (758)
T KOG0343|consen 264 -----------ARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKK--KSIVFLSSCKQVKFLY 330 (758)
T ss_pred -----------HHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhcccc--ceEEEEehhhHHHHHH
Confidence 01111122111100 000001122334567999999999987654 9999988888888877
Q ss_pred HHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHh
Q 044798 780 SFLIAS--GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWR 857 (1231)
Q Consensus 780 ~~L~~~--Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~R 857 (1231)
..+.+. |++...++|.|++..|..+.++|.... .++|++|+++++||+++++|.||.||+|-+..+|+||.||+.|
T Consensus 331 e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~--~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR 408 (758)
T KOG0343|consen 331 EAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKR--AVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTAR 408 (758)
T ss_pred HHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhc--ceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhc
Confidence 777654 999999999999999999999999865 7889999999999999999999999999999999999999999
Q ss_pred hCCcccEEEEEEEeCCCHHHHHHHHHHHH
Q 044798 858 IGQKQDVTVYRLITRGTIEEKVYHRQIYK 886 (1231)
Q Consensus 858 iGQkk~V~VYRLit~gTIEEkIy~rQ~~K 886 (1231)
++-.-...+| ++. +-||++..+...|
T Consensus 409 ~~~~G~sll~--L~p-sEeE~~l~~Lq~k 434 (758)
T KOG0343|consen 409 YKERGESLLM--LTP-SEEEAMLKKLQKK 434 (758)
T ss_pred ccCCCceEEE--Ecc-hhHHHHHHHHHHc
Confidence 9877776654 333 3456666666555
No 56
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.85 E-value=1.2e-20 Score=216.79 Aligned_cols=313 Identities=18% Similarity=0.196 Sum_probs=210.4
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCC-----CCcEEEEeCC-cchHHHHHH---HHH
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM-----YKPSIVVCPV-TLLRQWKRE---AEK 471 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~-----~kpvLIV~P~-sLl~QW~~E---~~k 471 (1231)
.|.+-|...+.-+ ..+...+.+.-+|+|||+..+.....+..... .-.+|||||+ .|..|-..| +.+
T Consensus 104 ~MT~VQ~~ti~pl----l~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 104 TMTPVQQKTIPPL----LEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred chhHHHHhhcCcc----CCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 4667777776555 56778999999999999886655544433322 2358999996 566665544 555
Q ss_pred HcCCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHh
Q 044798 472 WYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGE 551 (1231)
Q Consensus 472 w~p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~ 551 (1231)
+.+...|.++.|+...+. ..++ +..+..++|.|+++|..+.+
T Consensus 180 ~h~~~~v~~viGG~~~~~-------------------------------------e~~k-l~k~~niliATPGRLlDHlq 221 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSV-------------------------------------EADK-LVKGCNILIATPGRLLDHLQ 221 (543)
T ss_pred hCCCcceEEEeCCccchH-------------------------------------HHHH-hhccccEEEeCCchHHhHhh
Confidence 666777766666543211 1122 33477999999999988876
Q ss_pred hh---hcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccc
Q 044798 552 KL---LDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP 628 (1231)
Q Consensus 552 ~L---~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~p 628 (1231)
.- ......++|+|||++|...+ |...
T Consensus 222 Nt~~f~~r~~k~lvlDEADrlLd~G-----------------------------------------------F~~d---- 250 (543)
T KOG0342|consen 222 NTSGFLFRNLKCLVLDEADRLLDIG-----------------------------------------------FEED---- 250 (543)
T ss_pred cCCcchhhccceeEeecchhhhhcc-----------------------------------------------cHHH----
Confidence 42 22234789999999985433 2211
Q ss_pred cccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEE-ecCCHHHHHHHHHHHhhHHHHHHhhc
Q 044798 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLF-CSLTEEQRAVYRAFLASSEVEQILDG 707 (1231)
Q Consensus 629 I~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~-~~Lt~~Qr~lY~~~l~s~~~~~il~~ 707 (1231)
+.+ +..-||......+| ..+++.-+++.+-.+.+.-
T Consensus 251 -----------------------i~~-------------Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~------- 287 (543)
T KOG0342|consen 251 -----------------------VEQ-------------IIKILPKQRQTLLFSATQPSKVKDLARGALKRDP------- 287 (543)
T ss_pred -----------------------HHH-------------HHHhccccceeeEeeCCCcHHHHHHHHHhhcCCc-------
Confidence 111 12234544433333 4555555555443332200
Q ss_pred CcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCC
Q 044798 708 SRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGY 787 (1231)
Q Consensus 708 ~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi 787 (1231)
+.--|.++.-. .........|.......++-.|..+|+..... .|+||||.+..+..++...|+...+
T Consensus 288 ----------~~v~~~d~~~~-~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~-~KiiVF~sT~~~vk~~~~lL~~~dl 355 (543)
T KOG0342|consen 288 ----------VFVNVDDGGER-ETHERLEQGYVVAPSDSRFSLLYTFLKKNIKR-YKIIVFFSTCMSVKFHAELLNYIDL 355 (543)
T ss_pred ----------eEeecCCCCCc-chhhcccceEEeccccchHHHHHHHHHHhcCC-ceEEEEechhhHHHHHHHHHhhcCC
Confidence 00001000000 00000001122233445577788888876543 7999999999999999999999999
Q ss_pred cEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCccc
Q 044798 788 EYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQD 863 (1231)
Q Consensus 788 ~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~ 863 (1231)
++..|||..++..|..+..+|.+.. ..+|++|+|+++|+|++.++.||.||||-+|..|+||+||++|-|-+-.
T Consensus 356 pv~eiHgk~~Q~kRT~~~~~F~kae--sgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~ 429 (543)
T KOG0342|consen 356 PVLEIHGKQKQNKRTSTFFEFCKAE--SGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAREGKEGK 429 (543)
T ss_pred chhhhhcCCcccccchHHHHHhhcc--cceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccccCCCce
Confidence 9999999999999999999999876 6789999999999999999999999999999999999999999776544
No 57
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=3.3e-20 Score=200.22 Aligned_cols=315 Identities=17% Similarity=0.200 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHH-HHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeEEEE
Q 044798 404 DYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQ-VLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHVELL 481 (1231)
Q Consensus 404 pyQkegV~wL~el~~~~~GgILADEMGLGKTIq-aIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV~il 481 (1231)
..|..++..+ ..++..|.-..-|.|||.+ +|+++..+..+...-.+||+.|. .|..|..+-+......+.|.++
T Consensus 52 ~IQqrAi~~I----lkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~h 127 (400)
T KOG0328|consen 52 AIQQRAIPQI----LKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQCH 127 (400)
T ss_pred HHHhhhhhhh----hcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccceEE
Confidence 3477777666 6788999999999999987 55555555444444679999996 6666777777776655555444
Q ss_pred ecccch-hhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--hhcCCc
Q 044798 482 HDSAQD-LGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLDVEW 558 (1231)
Q Consensus 482 ~gs~~~-~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~--L~~~~w 558 (1231)
...+.. .+. .+. .+.-+.+||..|++++...... |.....
T Consensus 128 acigg~n~ge------------------------------------dik-kld~G~hvVsGtPGrv~dmikr~~L~tr~v 170 (400)
T KOG0328|consen 128 ACIGGKNLGE------------------------------------DIK-KLDYGQHVVSGTPGRVLDMIKRRSLRTRAV 170 (400)
T ss_pred EEecCCccch------------------------------------hhh-hhcccceEeeCCCchHHHHHHhccccccce
Confidence 322210 000 011 1234568999999999776643 666678
Q ss_pred cEEEEeCCcccCCc--chHHHHHHHhcc-cccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCCC
Q 044798 559 GYAVLDEGHRIRNP--NAEISLVCKQLQ-TVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYA 635 (1231)
Q Consensus 559 d~VILDEAH~IKN~--~Sk~skalk~L~-t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~ 635 (1231)
.++|||||+.+.|. ..+++...+.|. ....+++|||-- .|+..+..+..++ |+
T Consensus 171 kmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp----~eilemt~kfmtd--------------pv------ 226 (400)
T KOG0328|consen 171 KMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLP----HEILEMTEKFMTD--------------PV------ 226 (400)
T ss_pred eEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCc----HHHHHHHHHhcCC--------------ce------
Confidence 89999999999764 456777777775 455677788852 2333333222111 11
Q ss_pred CCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchhHHH
Q 044798 636 NASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGI 715 (1231)
Q Consensus 636 ~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~i 715 (1231)
...+-.-.++-+--..|-
T Consensus 227 ----------------------------------------rilvkrdeltlEgIKqf~---------------------- 244 (400)
T KOG0328|consen 227 ----------------------------------------RILVKRDELTLEGIKQFF---------------------- 244 (400)
T ss_pred ----------------------------------------eEEEecCCCchhhhhhhe----------------------
Confidence 111111222222111110
Q ss_pred HHHHHHhCChhhhhhhhhcCCCCCCCCCcc-hHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeC
Q 044798 716 DVMRKICNHPDLLEREQSCQIPDYGNPERS-EKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDG 794 (1231)
Q Consensus 716 ~~LRkicnHPdLl~~~~~~~~~d~~~~~~S-~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdG 794 (1231)
...+.. =|...|..|...+.- ...+|||+++...|+|..-++...+.+..|||
T Consensus 245 ------------------------v~ve~EewKfdtLcdLYd~LtI--tQavIFcnTk~kVdwLtekm~~~nftVssmHG 298 (400)
T KOG0328|consen 245 ------------------------VAVEKEEWKFDTLCDLYDTLTI--TQAVIFCNTKRKVDWLTEKMREANFTVSSMHG 298 (400)
T ss_pred ------------------------eeechhhhhHhHHHHHhhhheh--heEEEEecccchhhHHHHHHHhhCceeeeccC
Confidence 000011 144445555443322 27899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCC
Q 044798 795 LTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGT 874 (1231)
Q Consensus 795 sts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gT 874 (1231)
+|++++|.++++.|+.+. .+| |++|++-++|++++.++.||+||.|-|+..|+|||||.+|+|.+- .+..|+....
T Consensus 299 Dm~qkERd~im~dFRsg~-Srv-LitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkG--vainFVk~~d 374 (400)
T KOG0328|consen 299 DMEQKERDKIMNDFRSGK-SRV-LITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKG--VAINFVKSDD 374 (400)
T ss_pred CcchhHHHHHHHHhhcCC-ceE-EEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcc--eEEEEecHHH
Confidence 999999999999999984 344 889999999999999999999999999999999999999999654 3345666544
Q ss_pred H
Q 044798 875 I 875 (1231)
Q Consensus 875 I 875 (1231)
+
T Consensus 375 ~ 375 (400)
T KOG0328|consen 375 L 375 (400)
T ss_pred H
Confidence 3
No 58
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.84 E-value=8.9e-20 Score=209.37 Aligned_cols=354 Identities=18% Similarity=0.191 Sum_probs=214.4
Q ss_pred hhchHHHHHHHHHHHHHHc-----CCCcEEEEeCCCchHHHHHHHHHHHHhhcC--CCCcEEEEeCC-cchHHHHHHHHH
Q 044798 400 NNLFDYQKVGVQWLWELHC-----QRAGGIIGDEMGLGKTIQVLSFLGALHFSN--MYKPSIVVCPV-TLLRQWKREAEK 471 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~-----~~~GgILADEMGLGKTIqaIA~L~~L~~s~--~~kpvLIV~P~-sLl~QW~~E~~k 471 (1231)
..+||-|...+-|+++-+. ..+...++..+|+|||+.-...|..+..+. .+-++|||+|. .|+.|...+|.+
T Consensus 158 s~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~ 237 (620)
T KOG0350|consen 158 SRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKR 237 (620)
T ss_pred ccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHH
Confidence 4589999999999987554 234567899999999998444444443333 23578999995 888899999999
Q ss_pred HcCC--CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHH
Q 044798 472 WYPS--FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLL 549 (1231)
Q Consensus 472 w~p~--lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~ 549 (1231)
|+++ +.|+.+.|-.+......+ +....-....+|+|+|+++|..+
T Consensus 238 ~~~~tgL~V~~~sgq~sl~~E~~q---------------------------------L~~~~~~~~~DIlVaTPGRLVDH 284 (620)
T KOG0350|consen 238 LNSGTGLAVCSLSGQNSLEDEARQ---------------------------------LASDPPECRIDILVATPGRLVDH 284 (620)
T ss_pred hccCCceEEEecccccchHHHHHH---------------------------------HhcCCCccccceEEcCchHHHHh
Confidence 9975 455555443322111111 11111112348999999999887
Q ss_pred Hhh---hhcCCccEEEEeCCcccCCcchHH--HHHHHhcccccEEEecccC-------ccCChHHHHHhhhhhcCCCCCC
Q 044798 550 GEK---LLDVEWGYAVLDEGHRIRNPNAEI--SLVCKQLQTVHRIIMTGAP-------IQNKLSELWSLFDFVFPGKLGV 617 (1231)
Q Consensus 550 ~~~---L~~~~wd~VILDEAH~IKN~~Sk~--skalk~L~t~~RllLTGTP-------iqNnl~EL~SLl~FL~P~~lg~ 617 (1231)
... +...+..|+|+|||++|.+..-+- ...+..+.+..++.+.+-- ..--+.|+.+.+.-+.|.
T Consensus 285 l~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~---- 360 (620)
T KOG0350|consen 285 LNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPP---- 360 (620)
T ss_pred ccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCch----
Confidence 753 333456799999999997654332 2333334444443332211 001111111111000000
Q ss_pred hhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHH---HhhcCCCceEEEEEecCCHHHHHHHHH
Q 044798 618 LPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKAD---VNAQLPKKTEHVLFCSLTEEQRAVYRA 694 (1231)
Q Consensus 618 ~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~d---V~~dLP~K~e~vv~~~Lt~~Qr~lY~~ 694 (1231)
|..++.+-.|-+.-.- +....|...-. ..+
T Consensus 361 ----------------------------------l~kL~~satLsqdP~Kl~~l~l~~Prl~~v----~~~--------- 393 (620)
T KOG0350|consen 361 ----------------------------------LWKLVFSATLSQDPSKLKDLTLHIPRLFHV----SKP--------- 393 (620)
T ss_pred ----------------------------------hHhhhcchhhhcChHHHhhhhcCCCceEEe----ecc---------
Confidence 1111111111111111 11122211100 000
Q ss_pred HHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHH
Q 044798 695 FLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQM 774 (1231)
Q Consensus 695 ~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~ 774 (1231)
+. +.......+.... ...+.--|-..+..+|..|+ ..++|+|+.+...
T Consensus 394 ~~----------~ryslp~~l~~~~--------------------vv~~~~~kpl~~~~lI~~~k--~~r~lcf~~S~~s 441 (620)
T KOG0350|consen 394 LI----------GRYSLPSSLSHRL--------------------VVTEPKFKPLAVYALITSNK--LNRTLCFVNSVSS 441 (620)
T ss_pred cc----------eeeecChhhhhce--------------------eecccccchHhHHHHHHHhh--cceEEEEecchHH
Confidence 00 0000000000000 00011234456778888766 5699999999999
Q ss_pred HHHHHHHHH----HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHH
Q 044798 775 LDILESFLI----ASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQ 850 (1231)
Q Consensus 775 LdiLe~~L~----~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~Q 850 (1231)
...+...|+ .-.+++-.++|..+.+.|.+++..|+.+ ++.| |+++++.++|+++-..+.||+||||-.-.+|+|
T Consensus 442 a~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g-~i~v-LIcSD~laRGiDv~~v~~VINYd~P~~~ktyVH 519 (620)
T KOG0350|consen 442 ANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKG-DINV-LICSDALARGIDVNDVDNVINYDPPASDKTYVH 519 (620)
T ss_pred HHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcC-CceE-EEehhhhhcCCcccccceEeecCCCchhhHHHH
Confidence 888888776 3356777799999999999999999998 5665 778999999999999999999999999999999
Q ss_pred HHHhHHhhCCcccEEEEEEEeCC
Q 044798 851 ARERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 851 AigRa~RiGQkk~V~VYRLit~g 873 (1231)
|+||+.|.||.- ++|.|+...
T Consensus 520 R~GRTARAgq~G--~a~tll~~~ 540 (620)
T KOG0350|consen 520 RAGRTARAGQDG--YAITLLDKH 540 (620)
T ss_pred hhcccccccCCc--eEEEeeccc
Confidence 999999999875 455566543
No 59
>PRK02362 ski2-like helicase; Provisional
Probab=99.84 E-value=9.9e-19 Score=222.19 Aligned_cols=316 Identities=16% Similarity=0.161 Sum_probs=198.8
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC-CcchHHHHHHHHHHcC-CCe
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP-VTLLRQWKREAEKWYP-SFH 477 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P-~sLl~QW~~E~~kw~p-~lr 477 (1231)
..|+|+|.+++.-++ ..+.++|++.++|+|||+.+...+..... ..+++|||+| ..|+.|+..+|.++.+ +.+
T Consensus 22 ~~l~p~Q~~ai~~~~---~~g~nvlv~APTGSGKTlia~lail~~l~--~~~kal~i~P~raLa~q~~~~~~~~~~~g~~ 96 (737)
T PRK02362 22 EELYPPQAEAVEAGL---LDGKNLLAAIPTASGKTLIAELAMLKAIA--RGGKALYIVPLRALASEKFEEFERFEELGVR 96 (737)
T ss_pred CcCCHHHHHHHHHHH---hCCCcEEEECCCcchHHHHHHHHHHHHHh--cCCcEEEEeChHHHHHHHHHHHHHhhcCCCE
Confidence 358999999997532 36789999999999999987544333222 3568999999 5899999999998753 567
Q ss_pred EEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--hhc
Q 044798 478 VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLD 555 (1231)
Q Consensus 478 V~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~--L~~ 555 (1231)
+.+++|..... .. .....+|+|+|++.+...... ..-
T Consensus 97 v~~~tGd~~~~---------------------------------~~--------~l~~~~IiV~Tpek~~~llr~~~~~l 135 (737)
T PRK02362 97 VGISTGDYDSR---------------------------------DE--------WLGDNDIIVATSEKVDSLLRNGAPWL 135 (737)
T ss_pred EEEEeCCcCcc---------------------------------cc--------ccCCCCEEEECHHHHHHHHhcChhhh
Confidence 77776542100 00 012358999999988655432 111
Q ss_pred CCccEEEEeCCcccCCcch--HHHHHHHhc----ccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhcccc
Q 044798 556 VEWGYAVLDEGHRIRNPNA--EISLVCKQL----QTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN~~S--k~skalk~L----~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI 629 (1231)
...++||+||+|.+-+..- ..-..+..+ .....++||||+- |..++.. |+....+ ...+ .|+
T Consensus 136 ~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~--n~~~la~---wl~~~~~------~~~~-rpv 203 (737)
T PRK02362 136 DDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIG--NADELAD---WLDAELV------DSEW-RPI 203 (737)
T ss_pred hhcCEEEEECccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCC--CHHHHHH---HhCCCcc------cCCC-CCC
Confidence 2568999999999976432 222223333 2345688999973 4555543 3221110 0000 010
Q ss_pred ccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEec---CCHHHHHHHHHHHhhHHHHHHhh
Q 044798 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCS---LTEEQRAVYRAFLASSEVEQILD 706 (1231)
Q Consensus 630 ~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~---Lt~~Qr~lY~~~l~s~~~~~il~ 706 (1231)
| ....+.+.. +...++
T Consensus 204 -------------------------------------------~-l~~~v~~~~~~~~~~~~~----------------- 222 (737)
T PRK02362 204 -------------------------------------------D-LREGVFYGGAIHFDDSQR----------------- 222 (737)
T ss_pred -------------------------------------------C-CeeeEecCCeeccccccc-----------------
Confidence 0 001111000 000000
Q ss_pred cCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc-
Q 044798 707 GSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS- 785 (1231)
Q Consensus 707 ~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~- 785 (1231)
.+ ........+..+.+. ...+.++||||.++.....+...|...
T Consensus 223 -------------~~------------------~~~~~~~~~~~~~~~----~~~~~~~LVF~~sr~~~~~~a~~L~~~~ 267 (737)
T PRK02362 223 -------------EV------------------EVPSKDDTLNLVLDT----LEEGGQCLVFVSSRRNAEGFAKRAASAL 267 (737)
T ss_pred -------------cC------------------CCccchHHHHHHHHH----HHcCCCeEEEEeCHHHHHHHHHHHHHHh
Confidence 00 000001122222222 235779999999998877666665432
Q ss_pred -----------------------------------CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCC
Q 044798 786 -----------------------------------GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNL 830 (1231)
Q Consensus 786 -----------------------------------Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNL 830 (1231)
...+..+||+++..+|..+.+.|.++ .++| |++|.+.+.|+|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G-~i~V-LvaT~tla~Gvnl 345 (737)
T PRK02362 268 KKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDR-LIKV-ISSTPTLAAGLNL 345 (737)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcC-CCeE-EEechhhhhhcCC
Confidence 13577899999999999999999997 5655 7889999999999
Q ss_pred CCCCEEEE----cC-----CCCCcchHHHHHHhHHhhCCcccEEEEEEEe
Q 044798 831 TGANRVII----FD-----PDWNPSTDVQARERAWRIGQKQDVTVYRLIT 871 (1231)
Q Consensus 831 t~AnrVIi----~D-----p~WNPs~d~QAigRa~RiGQkk~V~VYRLit 871 (1231)
++.+.||. || .|.++..+.|++||++|.|....-.+|-++.
T Consensus 346 Pa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~ 395 (737)
T PRK02362 346 PARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAK 395 (737)
T ss_pred CceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEec
Confidence 98877765 77 5778899999999999999876544554443
No 60
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.83 E-value=6.9e-19 Score=205.28 Aligned_cols=314 Identities=18% Similarity=0.154 Sum_probs=189.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC-CcchHHHHHHHHHHcCCCeEEEEecccchhhhhhhhccCCCCC
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP-VTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTD 501 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P-~sLl~QW~~E~~kw~p~lrV~il~gs~~~~~~~~kr~~~~~~~ 501 (1231)
.++..++|+|||.+++.++..........++++|+| ..++.|+.+.+..++.. .+..+|+.........
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~-~~~~~~~~~~~~~~~~--------- 71 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS-NLGLLHSSSSFKRIKE--------- 71 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc-ccEEeeccHHHHHHhc---------
Confidence 578999999999998887776655556679999999 48899999999998754 4555665432110000
Q ss_pred CCCCCCCCCCccCcccCCCcchhhHHHHh-hhcCCCCEEEeCHHHHHHHHhh--------hhcCCccEEEEeCCcccCCc
Q 044798 502 NDGEGSHDSDYEGNLSSRNPKKWDLLINR-VLRSESGLLITTYEQLRLLGEK--------LLDVEWGYAVLDEGHRIRNP 572 (1231)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~k~~~~~i~~-~~~~~~~VvItTYe~Lr~~~~~--------L~~~~wd~VILDEAH~IKN~ 572 (1231)
.... ......+...... ......+|+++|++.+...... +......+||+||+|.+...
T Consensus 72 ~~~~------------~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~ 139 (358)
T TIGR01587 72 MGDS------------EEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEY 139 (358)
T ss_pred cCCc------------hhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHH
Confidence 0000 0000000000000 0012357999999988654322 22233479999999999753
Q ss_pred ch-HHHHHHHhcc--cccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHH
Q 044798 573 NA-EISLVCKQLQ--TVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCA 649 (1231)
Q Consensus 573 ~S-k~skalk~L~--t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~ 649 (1231)
.. .+...+..+. ....+++|||+- +.+.++..- +......
T Consensus 140 ~~~~l~~~l~~l~~~~~~~i~~SATlp-~~l~~~~~~------------------~~~~~~~------------------ 182 (358)
T TIGR01587 140 TLALILAVLEVLKDNDVPILLMSATLP-KFLKEYAEK------------------IGYVEFN------------------ 182 (358)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCch-HHHHHHHhc------------------CCCcccc------------------
Confidence 22 2333333332 345688999963 111111110 0000000
Q ss_pred HHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhh
Q 044798 650 VVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLE 729 (1231)
Q Consensus 650 ~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~ 729 (1231)
...+..... . +..|+...
T Consensus 183 --------------------~~~~~~~~~----~-------------------------------------~~~~~~~~- 200 (358)
T TIGR01587 183 --------------------EPLDLKEER----R-------------------------------------FERHRFIK- 200 (358)
T ss_pred --------------------cCCCCcccc----c-------------------------------------ccccccee-
Confidence 000000000 0 00000000
Q ss_pred hhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCC--cEEEEeCCCCHHHHHHH---
Q 044798 730 REQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGY--EYRRMDGLTPVKQRMAL--- 804 (1231)
Q Consensus 730 ~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi--~~~rIdGsts~~eRq~i--- 804 (1231)
.......|...+..++..+ ..+.++||||+++..++.+...|...+. .+..+||.++..+|...
T Consensus 201 ----------~~~~~~~~~~~l~~l~~~~-~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~ 269 (358)
T TIGR01587 201 ----------IESDKVGEISSLERLLEFI-KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAE 269 (358)
T ss_pred ----------eccccccCHHHHHHHHHHh-hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHH
Confidence 0000112344455555443 3467999999999999999999988876 49999999999999764
Q ss_pred -HHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcc----cEEEEEEEeCC
Q 044798 805 -IDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQ----DVTVYRLITRG 873 (1231)
Q Consensus 805 -Id~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk----~V~VYRLit~g 873 (1231)
++.|.++ .. .+|++|++.++|||+. ++.||+++.+ +..++|++||++|.|... .|+||.....+
T Consensus 270 ~~~~f~~~-~~-~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 270 LLEEMKKN-EK-FVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPEG 338 (358)
T ss_pred HHHHhcCC-CC-eEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCCC
Confidence 8899886 34 4588999999999995 8899988765 789999999999999764 35665554443
No 61
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=3.6e-19 Score=204.40 Aligned_cols=322 Identities=17% Similarity=0.219 Sum_probs=207.3
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHH-HHHHHHHhhcCC---CCcEEEEeCC----cchHHHHHHHHHH
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQV-LSFLGALHFSNM---YKPSIVVCPV----TLLRQWKREAEKW 472 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqa-IA~L~~L~~s~~---~kpvLIV~P~----sLl~QW~~E~~kw 472 (1231)
...|.|..+|.-. .-+...+-|.-+|+|||-.. |-+|-.|.|... ..++||+||+ ..+++....+..|
T Consensus 203 ~PTpIQ~a~IPva----llgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 203 KPTPIQVATIPVA----LLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred CCCchhhhcccHH----hhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 3468888887533 22444556778999999874 444455555442 3579999995 4455666777777
Q ss_pred cCCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh
Q 044798 473 YPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK 552 (1231)
Q Consensus 473 ~p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~ 552 (1231)
+ .+.|++..|+-+.. ....++.+.++|||.|++.|..+...
T Consensus 279 t-~I~~~L~vGGL~lk--------------------------------------~QE~~LRs~PDIVIATPGRlIDHlrN 319 (691)
T KOG0338|consen 279 T-DITVGLAVGGLDLK--------------------------------------AQEAVLRSRPDIVIATPGRLIDHLRN 319 (691)
T ss_pred c-cceeeeeecCccHH--------------------------------------HHHHHHhhCCCEEEecchhHHHHhcc
Confidence 6 47777777654321 34456778899999999999887754
Q ss_pred hhc---CCccEEEEeCCcccCCcch--HHHHHHHhcccccE--EEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhh
Q 044798 553 LLD---VEWGYAVLDEGHRIRNPNA--EISLVCKQLQTVHR--IIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEF 625 (1231)
Q Consensus 553 L~~---~~wd~VILDEAH~IKN~~S--k~skalk~L~t~~R--llLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f 625 (1231)
-.. -...++|||||++|...+- ++.. +..+.+.+| ++.|||--
T Consensus 320 s~sf~ldsiEVLvlDEADRMLeegFademnE-ii~lcpk~RQTmLFSATMt----------------------------- 369 (691)
T KOG0338|consen 320 SPSFNLDSIEVLVLDEADRMLEEGFADEMNE-IIRLCPKNRQTMLFSATMT----------------------------- 369 (691)
T ss_pred CCCccccceeEEEechHHHHHHHHHHHHHHH-HHHhccccccceeehhhhH-----------------------------
Confidence 333 3456899999999954331 1111 111222222 44444420
Q ss_pred ccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHH-HHHHHHHHhhHHHHHH
Q 044798 626 AVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQ-RAVYRAFLASSEVEQI 704 (1231)
Q Consensus 626 ~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Q-r~lY~~~l~s~~~~~i 704 (1231)
..+.++++ ..| +...-+|+..+..- ..+-+.|+.
T Consensus 370 ------------------------eeVkdL~s------------lSL--~kPvrifvd~~~~~a~~LtQEFiR------- 404 (691)
T KOG0338|consen 370 ------------------------EEVKDLAS------------LSL--NKPVRIFVDPNKDTAPKLTQEFIR------- 404 (691)
T ss_pred ------------------------HHHHHHHH------------hhc--CCCeEEEeCCccccchhhhHHHhe-------
Confidence 00111111 011 11111233222110 001111110
Q ss_pred hhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHH
Q 044798 705 LDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIA 784 (1231)
Q Consensus 705 l~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~ 784 (1231)
+| .....-+-..|..|+.... ..++|||.+++..+..+.-+|-.
T Consensus 405 -------------IR---------------------~~re~dRea~l~~l~~rtf--~~~~ivFv~tKk~AHRl~IllGL 448 (691)
T KOG0338|consen 405 -------------IR---------------------PKREGDREAMLASLITRTF--QDRTIVFVRTKKQAHRLRILLGL 448 (691)
T ss_pred -------------ec---------------------cccccccHHHHHHHHHHhc--ccceEEEEehHHHHHHHHHHHHH
Confidence 00 0001123345666666555 45999999999999999999999
Q ss_pred cCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccE
Q 044798 785 SGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864 (1231)
Q Consensus 785 ~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V 864 (1231)
.|+++.-|||+.++.+|...+..|.+. .|.| |++|+++++||++.++..||+|+.|-+...|+||+||+.|.|..-
T Consensus 449 lgl~agElHGsLtQ~QRlesL~kFk~~-eidv-LiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaG-- 524 (691)
T KOG0338|consen 449 LGLKAGELHGSLTQEQRLESLEKFKKE-EIDV-LIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAG-- 524 (691)
T ss_pred hhchhhhhcccccHHHHHHHHHHHHhc-cCCE-EEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCc--
Confidence 999999999999999999999999987 4555 789999999999999999999999999999999999999999553
Q ss_pred EEEEEEeCCCHHHHHHHH
Q 044798 865 TVYRLITRGTIEEKVYHR 882 (1231)
Q Consensus 865 ~VYRLit~gTIEEkIy~r 882 (1231)
+..-|+.++ |-+|+.-
T Consensus 525 rsVtlvgE~--dRkllK~ 540 (691)
T KOG0338|consen 525 RSVTLVGES--DRKLLKE 540 (691)
T ss_pred ceEEEeccc--cHHHHHH
Confidence 334467766 4444443
No 62
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.82 E-value=3.5e-19 Score=206.02 Aligned_cols=101 Identities=20% Similarity=0.275 Sum_probs=94.3
Q ss_pred CeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCC
Q 044798 763 HRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPD 842 (1231)
Q Consensus 763 ~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~ 842 (1231)
.++||||++......|..+|+..+++.+.||..|.+++|.+.+++|.+.+ ..+|++|+|+++||+++++.|||+|..|
T Consensus 464 GrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~--~~VLiaTDVAARGLDIp~V~HVIHYqVP 541 (731)
T KOG0347|consen 464 GRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSP--SGVLIATDVAARGLDIPGVQHVIHYQVP 541 (731)
T ss_pred CceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCC--CeEEEeehhhhccCCCCCcceEEEeecC
Confidence 49999999999999999999999999999999999999999999999876 6678999999999999999999999999
Q ss_pred CCcchHHHHHHhHHhhCCcccEEE
Q 044798 843 WNPSTDVQARERAWRIGQKQDVTV 866 (1231)
Q Consensus 843 WNPs~d~QAigRa~RiGQkk~V~V 866 (1231)
-....|+||-||+.|.+. .-|.|
T Consensus 542 rtseiYVHRSGRTARA~~-~Gvsv 564 (731)
T KOG0347|consen 542 RTSEIYVHRSGRTARANS-EGVSV 564 (731)
T ss_pred CccceeEecccccccccC-CCeEE
Confidence 999999999999999874 33555
No 63
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.82 E-value=5.5e-19 Score=196.24 Aligned_cols=308 Identities=17% Similarity=0.208 Sum_probs=210.9
Q ss_pred hHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHH-HHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHc--CCCeE
Q 044798 403 FDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVL-SFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWY--PSFHV 478 (1231)
Q Consensus 403 ~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaI-A~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~--p~lrV 478 (1231)
.|.|..||.-+ ..++.||-+.-+|+|||.... -++..+......--.||+.|+ .+..|-.+.|.... -++++
T Consensus 31 TpiQ~~cIpkI----LeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~ 106 (442)
T KOG0340|consen 31 TPIQQACIPKI----LEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKV 106 (442)
T ss_pred CchHhhhhHHH----hcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceE
Confidence 58999999887 468899999999999998743 333333322333457999996 66677777776554 35788
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh------
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK------ 552 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~------ 552 (1231)
.++.|..... .....+...+||||+|++.+..+...
T Consensus 107 ~vivGG~d~i--------------------------------------~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~ 148 (442)
T KOG0340|consen 107 SVIVGGTDMI--------------------------------------MQAAILSDRPHVVVATPGRLADHLSSNLGVCS 148 (442)
T ss_pred EEEEccHHHh--------------------------------------hhhhhcccCCCeEecCccccccccccCCccch
Confidence 8888765432 12223456679999999999765532
Q ss_pred hhcCCccEEEEeCCcccCCcchH-HHHHHHh-cccc-cEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhcccc
Q 044798 553 LLDVEWGYAVLDEGHRIRNPNAE-ISLVCKQ-LQTV-HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629 (1231)
Q Consensus 553 L~~~~wd~VILDEAH~IKN~~Sk-~skalk~-L~t~-~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI 629 (1231)
+...+..++|+|||.++.+..-. .-..|.. +..+ --+++|+|- .+++.++ +..|+
T Consensus 149 ~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATi-td~i~ql---------------------~~~~i 206 (442)
T KOG0340|consen 149 WIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKPRQTLLFSATI-TDTIKQL---------------------FGCPI 206 (442)
T ss_pred hhhhceeeEEecchhhhhccchhhHHhhhhccCCCccceEEEEeeh-hhHHHHh---------------------hcCCc
Confidence 12234568999999998654311 1111111 1111 224555542 1111111 11111
Q ss_pred ccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEe-cCCHHHHHHHHHHHhhHHHHHHhhcC
Q 044798 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFC-SLTEEQRAVYRAFLASSEVEQILDGS 708 (1231)
Q Consensus 630 ~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~-~Lt~~Qr~lY~~~l~s~~~~~il~~~ 708 (1231)
+.+ .-+.+.. +-.+--..+|.
T Consensus 207 ~k~-------------------------------------------~a~~~e~~~~vstvetL~q--------------- 228 (442)
T KOG0340|consen 207 TKS-------------------------------------------IAFELEVIDGVSTVETLYQ--------------- 228 (442)
T ss_pred ccc-------------------------------------------cceEEeccCCCCchhhhhh---------------
Confidence 110 0000000 00011111222
Q ss_pred cchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHHHHcCC
Q 044798 709 RNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKD-QGHRVLLFAQTQQMLDILESFLIASGY 787 (1231)
Q Consensus 709 ~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~-~g~KVLVFSQ~~~~LdiLe~~L~~~Gi 787 (1231)
.|.......|-.+|..+|+.+.+ ....++||+|.+....+|...|+..++
T Consensus 229 -----------------------------~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~ 279 (442)
T KOG0340|consen 229 -----------------------------GYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEV 279 (442)
T ss_pred -----------------------------heeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhce
Confidence 23333456788899999999877 567899999999999999999999999
Q ss_pred cEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCccc
Q 044798 788 EYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQD 863 (1231)
Q Consensus 788 ~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~ 863 (1231)
.+..+|+.|++.+|..++.+|+.+ .+++ |++|+|+++||+++.++.||+||.|-.|.+|+||.||..|.|..-.
T Consensus 280 r~~~lHs~m~Q~eR~~aLsrFrs~-~~~i-liaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~ 353 (442)
T KOG0340|consen 280 RVVSLHSQMPQKERLAALSRFRSN-AARI-LIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGM 353 (442)
T ss_pred eeeehhhcchHHHHHHHHHHHhhc-CccE-EEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcc
Confidence 999999999999999999999987 4444 7889999999999999999999999999999999999999998765
No 64
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=1.4e-19 Score=211.35 Aligned_cols=321 Identities=18% Similarity=0.236 Sum_probs=207.6
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHH-hhcC----------CCCcEEEEeCC-cchHHHHH
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSN----------MYKPSIVVCPV-TLLRQWKR 467 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L-~~s~----------~~kpvLIV~P~-sLl~QW~~ 467 (1231)
..+-|+|+-++.-+ ..+++.+.+..+|+|||...+..+... +..+ ....+||++|+ .|+.|-.+
T Consensus 95 ~~ptpvQk~sip~i----~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~n 170 (482)
T KOG0335|consen 95 TKPTPVQKYSIPII----SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN 170 (482)
T ss_pred cCCCcceeecccee----ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHH
Confidence 45689999999876 678899999999999998866554443 3222 13568999996 89999999
Q ss_pred HHHHHcC--CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHH
Q 044798 468 EAEKWYP--SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQ 545 (1231)
Q Consensus 468 E~~kw~p--~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~ 545 (1231)
|..++.- .+++++.++..+.. ...+....+++|+++|++.
T Consensus 171 ea~k~~~~s~~~~~~~ygg~~~~--------------------------------------~q~~~~~~gcdIlvaTpGr 212 (482)
T KOG0335|consen 171 EARKFSYLSGMKSVVVYGGTDLG--------------------------------------AQLRFIKRGCDILVATPGR 212 (482)
T ss_pred HHHhhcccccceeeeeeCCcchh--------------------------------------hhhhhhccCccEEEecCch
Confidence 9999863 34454444432110 1112245678999999999
Q ss_pred HHHHHhh--hhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEe--cccCccCChHHHHHhhhhhcCCCCCChhHH
Q 044798 546 LRLLGEK--LLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIM--TGAPIQNKLSELWSLFDFVFPGKLGVLPVF 621 (1231)
Q Consensus 546 Lr~~~~~--L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllL--TGTPiqNnl~EL~SLl~FL~P~~lg~~~~F 621 (1231)
|....+. +..-...|+|||||+++.+.- .+...-|+++ +++|.+|+.
T Consensus 213 L~d~~e~g~i~l~~~k~~vLDEADrMlD~m--------gF~p~Ir~iv~~~~~~~~~~~--------------------- 263 (482)
T KOG0335|consen 213 LKDLIERGKISLDNCKFLVLDEADRMLDEM--------GFEPQIRKIVEQLGMPPKNNR--------------------- 263 (482)
T ss_pred hhhhhhcceeehhhCcEEEecchHHhhhhc--------cccccHHHHhcccCCCCccce---------------------
Confidence 9876653 222344599999999985410 0111111111 122211110
Q ss_pred HHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHH
Q 044798 622 EAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEV 701 (1231)
Q Consensus 622 ~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~ 701 (1231)
....++..+...-..+-..|+...
T Consensus 264 ------------------------------------------------------qt~mFSAtfp~~iq~l~~~fl~~~-- 287 (482)
T KOG0335|consen 264 ------------------------------------------------------QTLLFSATFPKEIQRLAADFLKDN-- 287 (482)
T ss_pred ------------------------------------------------------eEEEEeccCChhhhhhHHHHhhcc--
Confidence 000111111111111221111110
Q ss_pred HHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHH---hc----CCeEEEEeccHHH
Q 044798 702 EQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWK---DQ----GHRVLLFAQTQQM 774 (1231)
Q Consensus 702 ~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~---~~----g~KVLVFSQ~~~~ 774 (1231)
..+..+.+ +.....+......-.....|...|+++|.... .. .++++||+..+.+
T Consensus 288 --------yi~laV~r----------vg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~ 349 (482)
T KOG0335|consen 288 --------YIFLAVGR----------VGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRG 349 (482)
T ss_pred --------ceEEEEee----------eccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccch
Confidence 00000000 00000000001111234556666777766443 11 2599999999999
Q ss_pred HHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHh
Q 044798 775 LDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARER 854 (1231)
Q Consensus 775 LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigR 854 (1231)
++.|..+|...|+++..|+|..++.+|...++.|.++. +. +|++|.++++|||+.++.+||+||.|-+-..|+|||||
T Consensus 350 ~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~-~p-vlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGR 427 (482)
T KOG0335|consen 350 ADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGK-AP-VLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGR 427 (482)
T ss_pred hhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCC-cc-eEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccc
Confidence 99999999999999999999999999999999999984 44 57899999999999999999999999999999999999
Q ss_pred HHhhCCcccEEEE
Q 044798 855 AWRIGQKQDVTVY 867 (1231)
Q Consensus 855 a~RiGQkk~V~VY 867 (1231)
++|.|+.--.+.+
T Consensus 428 TGR~Gn~G~atsf 440 (482)
T KOG0335|consen 428 TGRVGNGGRATSF 440 (482)
T ss_pred cccCCCCceeEEE
Confidence 9999998766554
No 65
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.81 E-value=1e-18 Score=201.72 Aligned_cols=136 Identities=18% Similarity=0.361 Sum_probs=102.0
Q ss_pred hHHHHHHHHHHHHH--hcCCeEEEEeccHHHHHHHHHHH----HH------------------cCCcEEEEeCCCCHHHH
Q 044798 746 EKMKVVAQVLKVWK--DQGHRVLLFAQTQQMLDILESFL----IA------------------SGYEYRRMDGLTPVKQR 801 (1231)
Q Consensus 746 ~Kl~~L~eLLk~~~--~~g~KVLVFSQ~~~~LdiLe~~L----~~------------------~Gi~~~rIdGsts~~eR 801 (1231)
-.+..|..+|...- ....|+|||-....+.+.=..+| .. .+.++.++||+|++.+|
T Consensus 407 LRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeR 486 (708)
T KOG0348|consen 407 LRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEER 486 (708)
T ss_pred hhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHH
Confidence 34455566665442 22458999987777765444333 22 13579999999999999
Q ss_pred HHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHH
Q 044798 802 MALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYH 881 (1231)
Q Consensus 802 q~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~ 881 (1231)
......|.... ..+|++|+|+++||||+.+..||-||||..+..|++|+||+.|+|-+-.-.. |+..+-.| |-
T Consensus 487 ts~f~~Fs~~~--~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alL--fL~P~Eae---y~ 559 (708)
T KOG0348|consen 487 TSVFQEFSHSR--RAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALL--FLLPSEAE---YV 559 (708)
T ss_pred HHHHHhhcccc--ceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEE--EecccHHH---HH
Confidence 99999999876 4478899999999999999999999999999999999999999998766444 35555444 44
Q ss_pred HHHHHHH
Q 044798 882 RQIYKHF 888 (1231)
Q Consensus 882 rQ~~K~~ 888 (1231)
....|..
T Consensus 560 ~~l~~~~ 566 (708)
T KOG0348|consen 560 NYLKKHH 566 (708)
T ss_pred HHHHhhc
Confidence 4444433
No 66
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.81 E-value=3.3e-18 Score=211.91 Aligned_cols=118 Identities=19% Similarity=0.275 Sum_probs=103.2
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecc
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTK 822 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTk 822 (1231)
....|..++.+.+..+...+..+||||.+....+.|...|...|+++..++|.+...+|..+...|+.+ . ++++|+
T Consensus 405 ~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~~ag~~g---~-VlIATd 480 (762)
T TIGR03714 405 TLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKG---A-VTVATS 480 (762)
T ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHHHcCCCC---e-EEEEcc
Confidence 456799999999998888899999999999999999999999999999999999988887776666554 3 578999
Q ss_pred ccccccCCC---------CCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEE
Q 044798 823 VGGLGTNLT---------GANRVIIFDPDWNPSTDVQARERAWRIGQKQDVT 865 (1231)
Q Consensus 823 vGg~GLNLt---------~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~ 865 (1231)
++|+|+++. +.+.||.|+++-+... .|++||++|.|..-.+.
T Consensus 481 mAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~ 531 (762)
T TIGR03714 481 MAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQ 531 (762)
T ss_pred ccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEE
Confidence 999999999 8899999999976644 99999999999776543
No 67
>PRK01172 ski2-like helicase; Provisional
Probab=99.81 E-value=9.1e-18 Score=211.68 Aligned_cols=307 Identities=19% Similarity=0.210 Sum_probs=192.6
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcC-CCeE
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYP-SFHV 478 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p-~lrV 478 (1231)
.|+|+|.+++..+ ..+...|++.++|+|||+++...+...... .+.+|+|+|. .|+.|+.+++.++.. +.++
T Consensus 22 ~l~~~Q~~ai~~l----~~~~nvlv~apTGSGKTl~a~lail~~l~~--~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v 95 (674)
T PRK01172 22 ELYDHQRMAIEQL----RKGENVIVSVPTAAGKTLIAYSAIYETFLA--GLKSIYIVPLRSLAMEKYEELSRLRSLGMRV 95 (674)
T ss_pred CCCHHHHHHHHHH----hcCCcEEEECCCCchHHHHHHHHHHHHHHh--CCcEEEEechHHHHHHHHHHHHHHhhcCCeE
Confidence 4899999999875 467789999999999999876555444333 3689999995 888999999988653 4555
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--hhcC
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLDV 556 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~--L~~~ 556 (1231)
.++.|..... .. .....+|+|+|++.+...... ..-.
T Consensus 96 ~~~~G~~~~~---------------------------------~~--------~~~~~dIiv~Tpek~~~l~~~~~~~l~ 134 (674)
T PRK01172 96 KISIGDYDDP---------------------------------PD--------FIKRYDVVILTSEKADSLIHHDPYIIN 134 (674)
T ss_pred EEEeCCCCCC---------------------------------hh--------hhccCCEEEECHHHHHHHHhCChhHHh
Confidence 5554422100 00 012458999999987654322 1123
Q ss_pred CccEEEEeCCcccCCcch--HHHHHHH---hccc-ccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccc
Q 044798 557 EWGYAVLDEGHRIRNPNA--EISLVCK---QLQT-VHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIT 630 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~~S--k~skalk---~L~t-~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~ 630 (1231)
.+++||+||+|.+.+... .....+. .+.. .+.++||||+- |..++- +|+....+ ...+.
T Consensus 135 ~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~--n~~~la---~wl~~~~~------~~~~r---- 199 (674)
T PRK01172 135 DVGLIVADEIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVS--NANELA---QWLNASLI------KSNFR---- 199 (674)
T ss_pred hcCEEEEecchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccC--CHHHHH---HHhCCCcc------CCCCC----
Confidence 578999999999965332 2222222 2333 34578999973 344432 23221110 00000
Q ss_pred cCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcc
Q 044798 631 VGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRN 710 (1231)
Q Consensus 631 ~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~ 710 (1231)
..| ....+++.. . .| .. ...
T Consensus 200 ----------------------------------------~vp-l~~~i~~~~--~----~~---~~---------~~~- 219 (674)
T PRK01172 200 ----------------------------------------PVP-LKLGILYRK--R----LI---LD---------GYE- 219 (674)
T ss_pred ----------------------------------------CCC-eEEEEEecC--e----ee---ec---------ccc-
Confidence 001 111111110 0 00 00 000
Q ss_pred hhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc-----
Q 044798 711 SLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS----- 785 (1231)
Q Consensus 711 ~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~----- 785 (1231)
... ..+..++......+.++|||+..+.....+...|...
T Consensus 220 ----------------------------------~~~-~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~ 264 (674)
T PRK01172 220 ----------------------------------RSQ-VDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFN 264 (674)
T ss_pred ----------------------------------ccc-ccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcc
Confidence 000 0122344444456789999999998887777766542
Q ss_pred --------------------CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCC----
Q 044798 786 --------------------GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDP---- 841 (1231)
Q Consensus 786 --------------------Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp---- 841 (1231)
...+..+||+++..+|..+.+.|.++ .++| |++|.+.+.|+|+++ .+||++|.
T Consensus 265 ~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g-~i~V-LvaT~~la~Gvnipa-~~VII~~~~~~~ 341 (674)
T PRK01172 265 DFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNR-YIKV-IVATPTLAAGVNLPA-RLVIVRDITRYG 341 (674)
T ss_pred cccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcC-CCeE-EEecchhhccCCCcc-eEEEEcCceEeC
Confidence 12467789999999999999999987 5555 788999999999996 68888764
Q ss_pred -----CCCcchHHHHHHhHHhhCCcccEEEE
Q 044798 842 -----DWNPSTDVQARERAWRIGQKQDVTVY 867 (1231)
Q Consensus 842 -----~WNPs~d~QAigRa~RiGQkk~V~VY 867 (1231)
++++..+.|++||++|.|....-..+
T Consensus 342 ~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~ 372 (674)
T PRK01172 342 NGGIRYLSNMEIKQMIGRAGRPGYDQYGIGY 372 (674)
T ss_pred CCCceeCCHHHHHHHhhcCCCCCCCCcceEE
Confidence 35677889999999999976653333
No 68
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.81 E-value=3.6e-18 Score=213.40 Aligned_cols=118 Identities=19% Similarity=0.288 Sum_probs=93.9
Q ss_pred hcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHH-----HHHHHHhC----CC-----CceEEEEeccccc
Q 044798 760 DQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRM-----ALIDEYNN----SS-----DVFIFILTTKVGG 825 (1231)
Q Consensus 760 ~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq-----~iId~Fn~----d~-----~i~VfLlSTkvGg 825 (1231)
..+.++||||+++..++.|...|...++ ..|+|.+++.+|. .++++|.+ +. .-..+||+|++++
T Consensus 270 e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVae 347 (844)
T TIGR02621 270 DSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGE 347 (844)
T ss_pred hCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhh
Confidence 4567999999999999999999998887 8999999999999 78999986 21 1135689999999
Q ss_pred cccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCccc--EEEEEEEeCCCHHHHHHHH
Q 044798 826 LGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQD--VTVYRLITRGTIEEKVYHR 882 (1231)
Q Consensus 826 ~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~--V~VYRLit~gTIEEkIy~r 882 (1231)
+|||+.. ++||++..|+ ..|+||+||++|.|.... ++|+.+-....-+..||..
T Consensus 348 rGLDId~-d~VI~d~aP~--esyIQRiGRtgR~G~~~~~~i~vv~~~~~~~~~~~vY~~ 403 (844)
T TIGR02621 348 VGVNISA-DHLVCDLAPF--ESMQQRFGRVNRFGELQACQIAVVHLDLGKDQDFDVYGK 403 (844)
T ss_pred hcccCCc-ceEEECCCCH--HHHHHHhcccCCCCCCCCceEEEEeeccCCCcccCCCCH
Confidence 9999986 9999987764 799999999999998644 4554431112234567754
No 69
>PRK00254 ski2-like helicase; Provisional
Probab=99.80 E-value=1.6e-17 Score=210.82 Aligned_cols=318 Identities=15% Similarity=0.148 Sum_probs=193.5
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHH-HHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcC-CC
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVL-SFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYP-SF 476 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaI-A~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p-~l 476 (1231)
..|+|+|.+++.-. +..+.+.|++..+|+|||+.+. +++..+.. ..+++|+|+|. .|+.|+.++|..|.. +.
T Consensus 22 ~~l~~~Q~~ai~~~---~~~g~nvlv~apTGsGKT~~~~l~il~~l~~--~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~ 96 (720)
T PRK00254 22 EELYPPQAEALKSG---VLEGKNLVLAIPTASGKTLVAEIVMVNKLLR--EGGKAVYLVPLKALAEEKYREFKDWEKLGL 96 (720)
T ss_pred CCCCHHHHHHHHHH---HhCCCcEEEECCCCcHHHHHHHHHHHHHHHh--cCCeEEEEeChHHHHHHHHHHHHHHhhcCC
Confidence 45899999999632 2467889999999999999884 44444432 24689999995 888999999988743 46
Q ss_pred eEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--hh
Q 044798 477 HVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK--LL 554 (1231)
Q Consensus 477 rV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~--L~ 554 (1231)
+|..++|..... ..| ...++|+|+|++.+...... ..
T Consensus 97 ~v~~~~Gd~~~~---------------------------------~~~--------~~~~~IiV~Tpe~~~~ll~~~~~~ 135 (720)
T PRK00254 97 RVAMTTGDYDST---------------------------------DEW--------LGKYDIIIATAEKFDSLLRHGSSW 135 (720)
T ss_pred EEEEEeCCCCCc---------------------------------hhh--------hccCCEEEEcHHHHHHHHhCCchh
Confidence 666666532100 001 13468999999988654431 11
Q ss_pred cCCccEEEEeCCcccCCc--chHHHHHHHhccc-ccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhcccccc
Q 044798 555 DVEWGYAVLDEGHRIRNP--NAEISLVCKQLQT-VHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITV 631 (1231)
Q Consensus 555 ~~~wd~VILDEAH~IKN~--~Sk~skalk~L~t-~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~ 631 (1231)
-.++++||+||+|.+.+. +......+..+.. ...++||||+- |..++-. |+....+ ...+ .|
T Consensus 136 l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~qiI~lSATl~--n~~~la~---wl~~~~~------~~~~-rp--- 200 (720)
T PRK00254 136 IKDVKLVVADEIHLIGSYDRGATLEMILTHMLGRAQILGLSATVG--NAEELAE---WLNAELV------VSDW-RP--- 200 (720)
T ss_pred hhcCCEEEEcCcCccCCccchHHHHHHHHhcCcCCcEEEEEccCC--CHHHHHH---HhCCccc------cCCC-CC---
Confidence 135789999999999643 3444455555543 45677999973 3455433 3221110 0000 00
Q ss_pred CCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcch
Q 044798 632 GGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNS 711 (1231)
Q Consensus 632 g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~ 711 (1231)
.|... .+++-... | ... +....
T Consensus 201 ----------------------------------------v~l~~-~~~~~~~~------~---~~~--------~~~~~ 222 (720)
T PRK00254 201 ----------------------------------------VKLRK-GVFYQGFL------F---WED--------GKIER 222 (720)
T ss_pred ----------------------------------------Cccee-eEecCCee------e---ccC--------cchhc
Confidence 01000 00000000 0 000 00000
Q ss_pred hHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHH-------
Q 044798 712 LYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIA------- 784 (1231)
Q Consensus 712 l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~------- 784 (1231)
.| ......+.+++ ..+.++||||.++.....+...|..
T Consensus 223 ------------~~-------------------~~~~~~~~~~i----~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~ 267 (720)
T PRK00254 223 ------------FP-------------------NSWESLVYDAV----KKGKGALVFVNTRRSAEKEALELAKKIKRFLT 267 (720)
T ss_pred ------------ch-------------------HHHHHHHHHHH----HhCCCEEEEEcChHHHHHHHHHHHHHHHHhcC
Confidence 00 00011122222 3467999999988766544433321
Q ss_pred --------------------------cCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEE
Q 044798 785 --------------------------SGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVII 838 (1231)
Q Consensus 785 --------------------------~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi 838 (1231)
....+..+||+++..+|..+.+.|+++ .++| |++|.+.+.|+|+++.+.||.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G-~i~V-LvaT~tLa~Gvnipa~~vVI~ 345 (720)
T PRK00254 268 KPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREG-LIKV-ITATPTLSAGINLPAFRVIIR 345 (720)
T ss_pred chhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCC-CCeE-EEeCcHHhhhcCCCceEEEEC
Confidence 123578899999999999999999987 5665 788999999999998776663
Q ss_pred -------cCCCC-CcchHHHHHHhHHhhCCcccEEEEEEEeCC
Q 044798 839 -------FDPDW-NPSTDVQARERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 839 -------~Dp~W-NPs~d~QAigRa~RiGQkk~V~VYRLit~g 873 (1231)
++.++ ....+.|++||++|.|....-.+|-++...
T Consensus 346 ~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 346 DTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTE 388 (720)
T ss_pred CceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCc
Confidence 33222 345789999999999876665555555543
No 70
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.78 E-value=3.7e-18 Score=199.84 Aligned_cols=316 Identities=20% Similarity=0.235 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHH-HHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcC---CCeE
Q 044798 404 DYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQV-LSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYP---SFHV 478 (1231)
Q Consensus 404 pyQkegV~wL~el~~~~~GgILADEMGLGKTIqa-IA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p---~lrV 478 (1231)
+.|..+|.-+ ..+-.-|+-.--|+|||+.. ++.+..+-........+||+|+ .+.-|....|.+.+| ++++
T Consensus 50 kiQaaAIP~~----~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~c 125 (980)
T KOG4284|consen 50 KIQAAAIPAI----FSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARC 125 (980)
T ss_pred chhhhhhhhh----hcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcce
Confidence 6787777654 34557899999999999873 3334444333444568999996 566688888888776 5788
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHh--hhhcC
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGE--KLLDV 556 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~--~L~~~ 556 (1231)
.+|.|+......+ .-....+|+|.|++++..+.+ .+...
T Consensus 126 svfIGGT~~~~d~---------------------------------------~rlk~~rIvIGtPGRi~qL~el~~~n~s 166 (980)
T KOG4284|consen 126 SVFIGGTAHKLDL---------------------------------------IRLKQTRIVIGTPGRIAQLVELGAMNMS 166 (980)
T ss_pred EEEecCchhhhhh---------------------------------------hhhhhceEEecCchHHHHHHHhcCCCcc
Confidence 8888765432111 112345799999999987664 46666
Q ss_pred CccEEEEeCCcccCCcch---HHHHHHHhcccc-cEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccC
Q 044798 557 EWGYAVLDEGHRIRNPNA---EISLVCKQLQTV-HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVG 632 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~~S---k~skalk~L~t~-~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g 632 (1231)
..+++|||||+++-...+ .+...+..|... ..++.|||--+| |.++.+
T Consensus 167 ~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~n-Ldn~Ls--------------------------- 218 (980)
T KOG4284|consen 167 HVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRN-LDNLLS--------------------------- 218 (980)
T ss_pred ceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchh-HHHHHH---------------------------
Confidence 789999999999977555 456667777544 446688885433 333221
Q ss_pred CCCCCChhhHhHHHHHHHHHHHHHh-HHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcch
Q 044798 633 GYANASPLQVSTAYRCAVVLRDLIM-PYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNS 711 (1231)
Q Consensus 633 ~~~~as~~~v~~~~k~~~~Lr~lI~-p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~ 711 (1231)
+.+. |.++|-...++ .-+.-+...+..|.......
T Consensus 219 ---------------------k~mrdp~lVr~n~~d~-~L~GikQyv~~~~s~nnsve---------------------- 254 (980)
T KOG4284|consen 219 ---------------------KFMRDPALVRFNADDV-QLFGIKQYVVAKCSPNNSVE---------------------- 254 (980)
T ss_pred ---------------------HHhcccceeecccCCc-eeechhheeeeccCCcchHH----------------------
Confidence 1111 11111111111 01111222222222211100
Q ss_pred hHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEE
Q 044798 712 LYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRR 791 (1231)
Q Consensus 712 l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~r 791 (1231)
+.--|++.|-++++.+.- ...||||....-++-|..+|...|+.+..
T Consensus 255 -------------------------------emrlklq~L~~vf~~ipy--~QAlVF~~~~sra~~~a~~L~ssG~d~~~ 301 (980)
T KOG4284|consen 255 -------------------------------EMRLKLQKLTHVFKSIPY--VQALVFCDQISRAEPIATHLKSSGLDVTF 301 (980)
T ss_pred -------------------------------HHHHHHHHHHHHHhhCch--HHHHhhhhhhhhhhHHHHHhhccCCCeEE
Confidence 012356666666665542 27899999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEE
Q 044798 792 MDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLI 870 (1231)
Q Consensus 792 IdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLi 870 (1231)
|.|.|++.+|..+++.+++- .++ +|++|+..++||+-..+|.||++|+|-|..+|.|||||++|+|..- ..|..+.
T Consensus 302 ISgaM~Q~~Rl~a~~~lr~f-~~r-ILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG~~G-~aVT~~~ 377 (980)
T KOG4284|consen 302 ISGAMSQKDRLLAVDQLRAF-RVR-ILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFGAHG-AAVTLLE 377 (980)
T ss_pred eccccchhHHHHHHHHhhhc-eEE-EEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccccccc-eeEEEec
Confidence 99999999999999999986 444 4889999999999999999999999999999999999999999754 4444343
No 71
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=4e-17 Score=204.04 Aligned_cols=131 Identities=21% Similarity=0.293 Sum_probs=111.0
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecc
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTK 822 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTk 822 (1231)
....|..+|.+.+......+.++||||.+....+.|...|...|+++..++|.+...++..+...|..+ . ++++|+
T Consensus 409 ~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~~e~~~i~~ag~~g---~-VlIATd 484 (790)
T PRK09200 409 TLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEAGQKG---A-VTVATN 484 (790)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccHHHHHHHHHcCCCC---e-EEEEcc
Confidence 456799999999988777899999999999999999999999999999999999888887777776654 3 578999
Q ss_pred ccccccCC---CCCC-----EEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHH
Q 044798 823 VGGLGTNL---TGAN-----RVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHR 882 (1231)
Q Consensus 823 vGg~GLNL---t~An-----rVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~r 882 (1231)
++|+|+|+ +++. +||+||.|-|+..|.|++||++|.|..-.+.. |+ |.|+.++.+
T Consensus 485 mAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~--~i---s~eD~l~~~ 547 (790)
T PRK09200 485 MAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQF--FI---SLEDDLLKR 547 (790)
T ss_pred chhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEE--EE---cchHHHHHh
Confidence 99999999 5777 99999999999999999999999998754432 23 346666543
No 72
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.77 E-value=2.3e-16 Score=193.64 Aligned_cols=132 Identities=19% Similarity=0.245 Sum_probs=107.1
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEec
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTT 821 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlST 821 (1231)
.....|...|.+++..+...+..+||||.++...+.|...|...|+++..|+|.+. +|+..+..|...+ .-++++|
T Consensus 453 ~t~~~K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~--g~VlVAT 528 (656)
T PRK12898 453 LTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQR--GRITVAT 528 (656)
T ss_pred eCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCC--CcEEEEc
Confidence 34567999999999987777889999999999999999999999999999999864 5566666666443 2367899
Q ss_pred cccccccCCC---CCC-----EEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHH
Q 044798 822 KVGGLGTNLT---GAN-----RVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHR 882 (1231)
Q Consensus 822 kvGg~GLNLt---~An-----rVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~r 882 (1231)
+++|+|+|+. .+. +||+||.|-|...|.|++||++|.|..-.+.. |+ |.|+.++.+
T Consensus 529 dmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~--~i---s~eD~l~~~ 592 (656)
T PRK12898 529 NMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEA--IL---SLEDDLLQS 592 (656)
T ss_pred cchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEE--Ee---chhHHHHHh
Confidence 9999999998 454 99999999999999999999999997644332 33 346655544
No 73
>PRK09401 reverse gyrase; Reviewed
Probab=99.76 E-value=5.4e-17 Score=212.14 Aligned_cols=296 Identities=15% Similarity=0.141 Sum_probs=191.1
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCC--Ce
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPS--FH 477 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~--lr 477 (1231)
.++|+|..++..+ ..+...++..++|+|||..++..+.. .......+|||||. .|+.||...|.++... +.
T Consensus 80 ~pt~iQ~~~i~~i----l~g~dv~i~ApTGsGKT~f~l~~~~~--l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~ 153 (1176)
T PRK09401 80 KPWSLQRTWAKRL----LLGESFAIIAPTGVGKTTFGLVMSLY--LAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCG 153 (1176)
T ss_pred CCcHHHHHHHHHH----HCCCcEEEEcCCCCCHHHHHHHHHHH--HHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCce
Confidence 5799999888766 46788899999999999643332222 22335789999996 8899999999998754 34
Q ss_pred EEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcCC
Q 044798 478 VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVE 557 (1231)
Q Consensus 478 V~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~~ 557 (1231)
+.++.+.+...... ............++|+|+|++.+..+...+....
T Consensus 154 ~~~~~g~~~~~~~e--------------------------------k~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~ 201 (1176)
T PRK09401 154 VKILYYHSSLKKKE--------------------------------KEEFLERLKEGDFDILVTTSQFLSKNFDELPKKK 201 (1176)
T ss_pred EEEEEccCCcchhH--------------------------------HHHHHHHHhcCCCCEEEECHHHHHHHHHhccccc
Confidence 44444332210000 0011222223457999999999988877666667
Q ss_pred ccEEEEeCCcccCCcc--------------hHHHHHHHhcc-------------------------cccEEEecccCccC
Q 044798 558 WGYAVLDEGHRIRNPN--------------AEISLVCKQLQ-------------------------TVHRIIMTGAPIQN 598 (1231)
Q Consensus 558 wd~VILDEAH~IKN~~--------------Sk~skalk~L~-------------------------t~~RllLTGTPiqN 598 (1231)
++++|+||||++.... ..+..++..++ ....++.|||....
T Consensus 202 ~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~ 281 (1176)
T PRK09401 202 FDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPR 281 (1176)
T ss_pred cCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCcc
Confidence 9999999999986311 22333443332 22346677776432
Q ss_pred ChHH-HHHhhhhhcCCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceE
Q 044798 599 KLSE-LWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTE 677 (1231)
Q Consensus 599 nl~E-L~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e 677 (1231)
.+.. ++. ..++ | ..+.. ...+ ....
T Consensus 282 ~~~~~l~~-------~ll~--------~----~v~~~----------------------------------~~~~-rnI~ 307 (1176)
T PRK09401 282 GNRVKLFR-------ELLG--------F----EVGSP----------------------------------VFYL-RNIV 307 (1176)
T ss_pred chHHHHhh-------ccce--------E----EecCc----------------------------------cccc-CCce
Confidence 1111 000 0000 0 00000 0000 0000
Q ss_pred EEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHH
Q 044798 678 HVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKV 757 (1231)
Q Consensus 678 ~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~ 757 (1231)
+ .++... .|...|.++++.
T Consensus 308 ~-~yi~~~------------------------------------------------------------~k~~~L~~ll~~ 326 (1176)
T PRK09401 308 D-SYIVDE------------------------------------------------------------DSVEKLVELVKR 326 (1176)
T ss_pred E-EEEEcc------------------------------------------------------------cHHHHHHHHHHh
Confidence 0 111000 244445566553
Q ss_pred HHhcCCeEEEEeccHHH---HHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEe---ccccccccCCC
Q 044798 758 WKDQGHRVLLFAQTQQM---LDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILT---TKVGGLGTNLT 831 (1231)
Q Consensus 758 ~~~~g~KVLVFSQ~~~~---LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlS---TkvGg~GLNLt 831 (1231)
. +..+||||+.... ++.|..+|...|+++..+||.+ ...+++|.++ .+.|++.+ |+++++|||++
T Consensus 327 l---~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G-~~~VLVatas~tdv~aRGIDiP 397 (1176)
T PRK09401 327 L---GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKFEEG-EVDVLVGVASYYGVLVRGIDLP 397 (1176)
T ss_pred c---CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHHHCC-CCCEEEEecCCCCceeecCCCC
Confidence 3 4589999998666 9999999999999999999999 2345999998 67787665 79999999999
Q ss_pred C-CCEEEEcCCCC------CcchHHHHHHhHHhh
Q 044798 832 G-ANRVIIFDPDW------NPSTDVQARERAWRI 858 (1231)
Q Consensus 832 ~-AnrVIi~Dp~W------NPs~d~QAigRa~Ri 858 (1231)
. ..+||+|+.|- ....+.++++|+-.+
T Consensus 398 ~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~~ 431 (1176)
T PRK09401 398 ERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLSL 431 (1176)
T ss_pred cceeEEEEeCCCCEEEeccccccCHHHHHHHHhh
Confidence 8 89999999997 667788999999744
No 74
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.76 E-value=9.2e-17 Score=199.61 Aligned_cols=108 Identities=15% Similarity=0.202 Sum_probs=90.5
Q ss_pred cCCeEEEEeccHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHh-CCCCceEEEEeccccccccCCCCCCEEE
Q 044798 761 QGHRVLLFAQTQQMLDILESFLIAS--GYEYRRMDGLTPVKQRMALIDEYN-NSSDVFIFILTTKVGGLGTNLTGANRVI 837 (1231)
Q Consensus 761 ~g~KVLVFSQ~~~~LdiLe~~L~~~--Gi~~~rIdGsts~~eRq~iId~Fn-~d~~i~VfLlSTkvGg~GLNLt~AnrVI 837 (1231)
.+..+|||+.....++.+...|... ++.+..+||.+++. ++.+++|. ++ . .-+|++|+++++||+++++++||
T Consensus 394 ~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~g-k-~kILVATdIAERGIDIp~V~~VI 469 (675)
T PHA02653 394 KGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSK-N-PSIIISTPYLESSVTIRNATHVY 469 (675)
T ss_pred cCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccC-c-eeEEeccChhhccccccCeeEEE
Confidence 3568999999999999999999887 79999999999864 56777874 44 3 45688999999999999999999
Q ss_pred EcC----CC--------CCcchHHHHHHhHHhhCCcccEEEEEEEeCCCH
Q 044798 838 IFD----PD--------WNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875 (1231)
Q Consensus 838 i~D----p~--------WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTI 875 (1231)
.++ |. .+.+.+.||.||++|. ++-.+|+|+++...
T Consensus 470 D~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~---~~G~c~rLyt~~~~ 516 (675)
T PHA02653 470 DTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV---SPGTYVYFYDLDLL 516 (675)
T ss_pred ECCCccCCCcccCcccccCHHHHHHhccCcCCC---CCCeEEEEECHHHh
Confidence 997 32 2667889999999997 56888999988764
No 75
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.76 E-value=2.5e-16 Score=197.63 Aligned_cols=358 Identities=16% Similarity=0.087 Sum_probs=203.0
Q ss_pred hchHHHHHHHHHHHHHHcC------CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHc
Q 044798 401 NLFDYQKVGVQWLWELHCQ------RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWY 473 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~------~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~ 473 (1231)
..++||..+|+-+.+.... ..+|++.+.+|+|||++++.++..+.......++|||||. .|..||.++|..+.
T Consensus 238 ~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~ 317 (667)
T TIGR00348 238 YQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQ 317 (667)
T ss_pred ehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhC
Confidence 4799999999998876543 3589999999999999999888777655556789999995 79999999999986
Q ss_pred CCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh-
Q 044798 474 PSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK- 552 (1231)
Q Consensus 474 p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~- 552 (1231)
+... ...... ..+..........|+|+|+++|......
T Consensus 318 ~~~~----~~~~s~-------------------------------------~~L~~~l~~~~~~iivtTiQk~~~~~~~~ 356 (667)
T TIGR00348 318 KDCA----ERIESI-------------------------------------AELKRLLEKDDGGIIITTIQKFDKKLKEE 356 (667)
T ss_pred CCCC----cccCCH-------------------------------------HHHHHHHhCCCCCEEEEEhHHhhhhHhhh
Confidence 4211 000000 0011111123457999999999753222
Q ss_pred hhcC----CccEEEEeCCcccCCcchHHHHHH-HhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhcc
Q 044798 553 LLDV----EWGYAVLDEGHRIRNPNAEISLVC-KQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAV 627 (1231)
Q Consensus 553 L~~~----~wd~VILDEAH~IKN~~Sk~skal-k~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~ 627 (1231)
+... ...+||+||||+.-. ......+ ..+...++++|||||+...-.+-+ ..|...|..
T Consensus 357 ~~~~~~~~~~~lvIvDEaHrs~~--~~~~~~l~~~~p~a~~lGfTaTP~~~~d~~t~--------------~~f~~~fg~ 420 (667)
T TIGR00348 357 EEKFPVDRKEVVVIFDEAHRSQY--GELAKNLKKALKNASFFGFTGTPIFKKDRDTS--------------LTFAYVFGR 420 (667)
T ss_pred hhccCCCCCCEEEEEEcCccccc--hHHHHHHHhhCCCCcEEEEeCCCccccccccc--------------ccccCCCCC
Confidence 2211 123899999998642 2334445 356778999999999863211111 111111111
Q ss_pred ccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEe--cCCHHH-HHHHHHHHhhH-----
Q 044798 628 PITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFC--SLTEEQ-RAVYRAFLASS----- 699 (1231)
Q Consensus 628 pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~--~Lt~~Q-r~lY~~~l~s~----- 699 (1231)
++..-. +.+.|..- -+-+.....+.+ .++... ...+.......
T Consensus 421 ~i~~Y~------------------~~~AI~dG-----------~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 471 (667)
T TIGR00348 421 YLHRYF------------------ITDAIRDG-----------LTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIR 471 (667)
T ss_pred eEEEee------------------HHHHhhcC-----------CeeeEEEEecchhhccChHHHHHHHHHHHHhhhcccc
Confidence 111100 11111100 000111111111 111111 01111111000
Q ss_pred -HHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHH----HhcCCeEEEEeccHHH
Q 044798 700 -EVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVW----KDQGHRVLLFAQTQQM 774 (1231)
Q Consensus 700 -~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~----~~~g~KVLVFSQ~~~~ 774 (1231)
.....+.. ....+..+..+|..+. .+...+++.+ ...+.|.+|||.++..
T Consensus 472 ~~~~~~l~~------~~~~~~~~~~~~~~~~-------------------~ia~~i~~h~~~~~~~~~~kamvv~~sr~~ 526 (667)
T TIGR00348 472 EITKESLKE------KLQKTKKILFNEDRLE-------------------SIAKDIAEHYAKFKELFKFKAMVVAISRYA 526 (667)
T ss_pred HHHHHHHHH------HHHHHHhhhcChHHHH-------------------HHHHHHHHHHHHhhhcccCceeEEEecHHH
Confidence 00000000 0111112222222221 1122233332 2235799999999999
Q ss_pred HHHHHHHHHHc-----CCcEEEEeCCCCHH---------------------HHHHHHHHHhCCCCceEEEEecccccccc
Q 044798 775 LDILESFLIAS-----GYEYRRMDGLTPVK---------------------QRMALIDEYNNSSDVFIFILTTKVGGLGT 828 (1231)
Q Consensus 775 LdiLe~~L~~~-----Gi~~~rIdGsts~~---------------------eRq~iId~Fn~d~~i~VfLlSTkvGg~GL 828 (1231)
+..+...|... +...+.++|+.+.. ....++++|.++..+.+ |+..+....|+
T Consensus 527 a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~i-lIVvdmllTGF 605 (667)
T TIGR00348 527 CVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKL-LIVVDMLLTGF 605 (667)
T ss_pred HHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceE-EEEEccccccc
Confidence 98888877554 35567777765432 23478999987656666 45669999999
Q ss_pred CCCCCCEEEEcCCCCCcchHHHHHHhHHhh-CCccc-EEEEEEEe
Q 044798 829 NLTGANRVIIFDPDWNPSTDVQARERAWRI-GQKQD-VTVYRLIT 871 (1231)
Q Consensus 829 NLt~AnrVIi~Dp~WNPs~d~QAigRa~Ri-GQkk~-V~VYRLit 871 (1231)
|.+.++.+++.-|--.. ..+|++||+.|+ +..|+ ..|+.++.
T Consensus 606 DaP~l~tLyldKplk~h-~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 606 DAPILNTLYLDKPLKYH-GLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred CCCccceEEEecccccc-HHHHHHHHhccccCCCCCCEEEEECcC
Confidence 99999999988876654 579999999995 43343 66666543
No 76
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.75 E-value=5.4e-17 Score=200.13 Aligned_cols=120 Identities=22% Similarity=0.207 Sum_probs=107.0
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecc
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTK 822 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTk 822 (1231)
....|..++.+.+..+...|..|||||.+....+.|...|...|+++..++|. +.+|+..|..|...+ ..++++|+
T Consensus 386 t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ii~~ag~~--g~VtIATn 461 (745)
T TIGR00963 386 TEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAEIIAQAGRK--GAVTIATN 461 (745)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHHHHHhcCCC--ceEEEEec
Confidence 34568888888888888899999999999999999999999999999999998 679999999998764 55588999
Q ss_pred ccccccCCCC-------CCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEE
Q 044798 823 VGGLGTNLTG-------ANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866 (1231)
Q Consensus 823 vGg~GLNLt~-------AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~V 866 (1231)
++|+|+++.. ..+||.+++|-|+..|.|++||++|.|..-....
T Consensus 462 mAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 462 MAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred cccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 9999999987 6699999999999999999999999998765444
No 77
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.75 E-value=6e-18 Score=188.72 Aligned_cols=337 Identities=21% Similarity=0.257 Sum_probs=216.0
Q ss_pred CCCCcccccCCcccChhhhhhc--------hHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHH----HHHHHHHHh---
Q 044798 381 NEPPFVTLEGGLKIPESIFNNL--------FDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQ----VLSFLGALH--- 445 (1231)
Q Consensus 381 ~~~~~~~~~~~~~iP~~i~~~L--------~pyQkegV~wL~el~~~~~GgILADEMGLGKTIq----aIA~L~~L~--- 445 (1231)
..||++..+-..+.|..+...| .|.|.+|+.-+ ..++.-|-..=+|+|||+. +|.|...--
T Consensus 164 ~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPvv----LsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~l 239 (610)
T KOG0341|consen 164 DIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPVV----LSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMML 239 (610)
T ss_pred CCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcceE----eecCceeeEEeecCCceEEEeHHHHHHHHHHHhcC
Confidence 4466677777788888886554 58888888665 4677778778899999976 333433221
Q ss_pred -hcCCCCc-EEEEeCC-cchHHHHHHHHHH--------cCCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccC
Q 044798 446 -FSNMYKP-SIVVCPV-TLLRQWKREAEKW--------YPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEG 514 (1231)
Q Consensus 446 -~s~~~kp-vLIV~P~-sLl~QW~~E~~kw--------~p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~ 514 (1231)
....-+| -|||||. .|..|-..-+..+ +|.++..+..|+....
T Consensus 240 Pf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~-------------------------- 293 (610)
T KOG0341|consen 240 PFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVR-------------------------- 293 (610)
T ss_pred ccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHH--------------------------
Confidence 1222344 5999995 5555654444444 3556655554443211
Q ss_pred cccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh-h-hcCCccEEEEeCCcccCCcch--HHHHHHHhccccc-EE
Q 044798 515 NLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK-L-LDVEWGYAVLDEGHRIRNPNA--EISLVCKQLQTVH-RI 589 (1231)
Q Consensus 515 ~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~-L-~~~~wd~VILDEAH~IKN~~S--k~skalk~L~t~~-Rl 589 (1231)
..-.++..+.||||.|++.|...... + ..--..|+.||||+++-+.+- .+.....-++..+ -+
T Consensus 294 ------------eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QRQTL 361 (610)
T KOG0341|consen 294 ------------EQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQRQTL 361 (610)
T ss_pred ------------HHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhhhee
Confidence 12234567789999999999765432 2 222356899999999976542 1111112222221 13
Q ss_pred EecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 044798 590 IMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVN 669 (1231)
Q Consensus 590 lLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~ 669 (1231)
+.|+|--. =.+.|.. ..++
T Consensus 362 LFSATMP~-----------------------KIQ~FAk-------------------------SALV------------- 380 (610)
T KOG0341|consen 362 LFSATMPK-----------------------KIQNFAK-------------------------SALV------------- 380 (610)
T ss_pred eeeccccH-----------------------HHHHHHH-------------------------hhcc-------------
Confidence 33443200 0000000 0000
Q ss_pred hcCCCceEEEEE---ecCCHHHHHHHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcch
Q 044798 670 AQLPKKTEHVLF---CSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSE 746 (1231)
Q Consensus 670 ~dLP~K~e~vv~---~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~ 746 (1231)
.|....|-. ..|.-.|.-.|- + ...
T Consensus 381 ---KPvtvNVGRAGAAsldViQevEyV-------------------------k------------------------qEa 408 (610)
T KOG0341|consen 381 ---KPVTVNVGRAGAASLDVIQEVEYV-------------------------K------------------------QEA 408 (610)
T ss_pred ---cceEEecccccccchhHHHHHHHH-------------------------H------------------------hhh
Confidence 111111111 112222221111 1 134
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecccccc
Q 044798 747 KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGL 826 (1231)
Q Consensus 747 Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~ 826 (1231)
|+.+|++.|+ ...-+|||||.-+.-.|-|..+|-.+|+..+.|||.-.+++|...|+.|+.+. +-+|+.|+|++-
T Consensus 409 KiVylLeCLQ---KT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gk--KDVLVATDVASK 483 (610)
T KOG0341|consen 409 KIVYLLECLQ---KTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGK--KDVLVATDVASK 483 (610)
T ss_pred hhhhHHHHhc---cCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCC--CceEEEecchhc
Confidence 6666666654 45679999999999999999999999999999999999999999999999985 556889999999
Q ss_pred ccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHH
Q 044798 827 GTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKV 879 (1231)
Q Consensus 827 GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkI 879 (1231)
||++++..+||+||.|-....|.+||||++|-|.+--.+. |+.+++-|.-+
T Consensus 484 GLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATT--fINK~~~esvL 534 (610)
T KOG0341|consen 484 GLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATT--FINKNQEESVL 534 (610)
T ss_pred cCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeee--eecccchHHHH
Confidence 9999999999999999999999999999999998765433 46666544433
No 78
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=5.3e-17 Score=186.36 Aligned_cols=320 Identities=17% Similarity=0.255 Sum_probs=212.7
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHH-HHHhhc----CCCCcE-EEEeCC-cchHHHHHHHHHHc
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFL-GALHFS----NMYKPS-IVVCPV-TLLRQWKREAEKWY 473 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L-~~L~~s----~~~kpv-LIV~P~-sLl~QW~~E~~kw~ 473 (1231)
+.+|.|..+|.-. ..++..|-..-+|+|||-..|-.+ ..++.. ...+|+ ||+||. .+..|...|.++|+
T Consensus 245 kptpiq~qalpta----lsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~ 320 (731)
T KOG0339|consen 245 KPTPIQCQALPTA----LSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFG 320 (731)
T ss_pred cCCcccccccccc----cccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhh
Confidence 3455555555332 345566767889999996543221 122221 123454 778885 88899999999986
Q ss_pred C--CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHh
Q 044798 474 P--SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGE 551 (1231)
Q Consensus 474 p--~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~ 551 (1231)
. +++++.+|+++.. | ...+.+..+..+||+|+++|..+..
T Consensus 321 K~ygl~~v~~ygGgsk------------------------------------~--eQ~k~Lk~g~EivVaTPgRlid~Vk 362 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSK------------------------------------W--EQSKELKEGAEIVVATPGRLIDMVK 362 (731)
T ss_pred hhccceEEEeecCCcH------------------------------------H--HHHHhhhcCCeEEEechHHHHHHHH
Confidence 3 5777777776642 2 1223345677899999999977653
Q ss_pred --hhhcCCccEEEEeCCcccCCcc--hHHHHHHHhcccccE-EEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhc
Q 044798 552 --KLLDVEWGYAVLDEGHRIRNPN--AEISLVCKQLQTVHR-IIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFA 626 (1231)
Q Consensus 552 --~L~~~~wd~VILDEAH~IKN~~--Sk~skalk~L~t~~R-llLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~ 626 (1231)
...-.+..|+|||||.+|-..+ .++...+..++..+- |+.|+|- ...+.
T Consensus 363 mKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hirpdrQtllFsaTf--------------------------~~kIe 416 (731)
T KOG0339|consen 363 MKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIRPDRQTLLFSATF--------------------------KKKIE 416 (731)
T ss_pred hhcccceeeeEEEEechhhhhccccHHHHHHHHhhcCCcceEEEeeccc--------------------------hHHHH
Confidence 2344567899999999997654 233334444444433 4455552 11100
Q ss_pred cccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhh
Q 044798 627 VPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD 706 (1231)
Q Consensus 627 ~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~ 706 (1231)
...+++|.. -+|++..+|... ..-..++|+
T Consensus 417 -----------------------~lard~L~d-pVrvVqg~vgea-n~dITQ~V~------------------------- 446 (731)
T KOG0339|consen 417 -----------------------KLARDILSD-PVRVVQGEVGEA-NEDITQTVS------------------------- 446 (731)
T ss_pred -----------------------HHHHHHhcC-CeeEEEeehhcc-ccchhheee-------------------------
Confidence 000111110 011111111100 001111111
Q ss_pred cCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcC
Q 044798 707 GSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASG 786 (1231)
Q Consensus 707 ~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~G 786 (1231)
+| +....|+..|..-|-.....| +||||..-....+-|...|+.+|
T Consensus 447 --------------V~-------------------~s~~~Kl~wl~~~L~~f~S~g-kvlifVTKk~~~e~i~a~Lklk~ 492 (731)
T KOG0339|consen 447 --------------VC-------------------PSEEKKLNWLLRHLVEFSSEG-KVLIFVTKKADAEEIAANLKLKG 492 (731)
T ss_pred --------------ec-------------------cCcHHHHHHHHHHhhhhccCC-cEEEEEeccCCHHHHHHHhcccc
Confidence 12 122457777777777766666 99999999999999999999999
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEE
Q 044798 787 YEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866 (1231)
Q Consensus 787 i~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~V 866 (1231)
|++..++|++.+.+|.+.+..|+... .-+|+.|+++++||++....+||+||..-+..++.|+|||.+|.|-+ -..
T Consensus 493 ~~v~llhgdkdqa~rn~~ls~fKkk~--~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~k--Gva 568 (731)
T KOG0339|consen 493 FNVSLLHGDKDQAERNEVLSKFKKKR--KPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEK--GVA 568 (731)
T ss_pred ceeeeecCchhhHHHHHHHHHHhhcC--CceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhccccccc--cee
Confidence 99999999999999999999999863 44578899999999999999999999999999999999999999987 566
Q ss_pred EEEEeCCCHH
Q 044798 867 YRLITRGTIE 876 (1231)
Q Consensus 867 YRLit~gTIE 876 (1231)
|.|+++-..+
T Consensus 569 yTlvTeKDa~ 578 (731)
T KOG0339|consen 569 YTLVTEKDAE 578 (731)
T ss_pred eEEechhhHH
Confidence 8889876554
No 79
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.75 E-value=7e-17 Score=180.52 Aligned_cols=127 Identities=21% Similarity=0.343 Sum_probs=107.0
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccc
Q 044798 744 RSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKV 823 (1231)
Q Consensus 744 ~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkv 823 (1231)
...|+++|.+|...+- -| ..||||+.+.+...|...|...|+.+..++|.+...+|..+|++|+.+. .-+|++|.|
T Consensus 314 ~~~K~~~l~~lyg~~t-ig-qsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~--~kVLitTnV 389 (477)
T KOG0332|consen 314 RDDKYQALVNLYGLLT-IG-QSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGK--EKVLITTNV 389 (477)
T ss_pred hhhHHHHHHHHHhhhh-hh-heEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCc--ceEEEEech
Confidence 3568899988665432 23 7899999999999999999999999999999999999999999999984 445889999
Q ss_pred cccccCCCCCCEEEEcCCCC------CcchHHHHHHhHHhhCCcccEEEEEEEe-CCCHH
Q 044798 824 GGLGTNLTGANRVIIFDPDW------NPSTDVQARERAWRIGQKQDVTVYRLIT-RGTIE 876 (1231)
Q Consensus 824 Gg~GLNLt~AnrVIi~Dp~W------NPs~d~QAigRa~RiGQkk~V~VYRLit-~gTIE 876 (1231)
.++|++...++.||+||.|- +|.+|.|||||++|+|.+- +.|- |+- ..+.+
T Consensus 390 ~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG-~a~n-~v~~~~s~~ 447 (477)
T KOG0332|consen 390 CARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKG-LAIN-LVDDKDSMN 447 (477)
T ss_pred hhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccc-eEEE-eecccCcHH
Confidence 99999999999999999886 6789999999999999654 4333 554 34443
No 80
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=4.9e-17 Score=182.60 Aligned_cols=326 Identities=19% Similarity=0.221 Sum_probs=214.0
Q ss_pred CcccccCCcccChhhhhh--------chHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHH--HHHHH-----hhcC
Q 044798 384 PFVTLEGGLKIPESIFNN--------LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLS--FLGAL-----HFSN 448 (1231)
Q Consensus 384 ~~~~~~~~~~iP~~i~~~--------L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA--~L~~L-----~~s~ 448 (1231)
|.-++++.|..-+++... ..|.|-+ .| -...++..+|....+|.|||+.-+. |+... +...
T Consensus 217 P~ctFddAFq~~pevmenIkK~GFqKPtPIqSQ--aW--PI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr 292 (629)
T KOG0336|consen 217 PVCTFDDAFQCYPEVMENIKKTGFQKPTPIQSQ--AW--PILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQR 292 (629)
T ss_pred CcCcHHHHHhhhHHHHHHHHhccCCCCCcchhc--cc--ceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhcc
Confidence 344455556555555433 3455533 33 3447889999999999999987542 11111 1122
Q ss_pred CCCcEEEEeCC-cchHHHHHHHHHHc-CCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhH
Q 044798 449 MYKPSIVVCPV-TLLRQWKREAEKWY-PSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDL 526 (1231)
Q Consensus 449 ~~kpvLIV~P~-sLl~QW~~E~~kw~-p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 526 (1231)
....+||+.|. .|..|-.-|..++- .+++.++++|.++-.
T Consensus 293 ~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~-------------------------------------- 334 (629)
T KOG0336|consen 293 NGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRN-------------------------------------- 334 (629)
T ss_pred CCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCch--------------------------------------
Confidence 33468999996 56667777777663 455544444444311
Q ss_pred HHHhhhcCCCCEEEeCHHHHHHHHh--hhhcCCccEEEEeCCcccCCcc--hHHHHHHHhcccccEEEec-ccCccCChH
Q 044798 527 LINRVLRSESGLLITTYEQLRLLGE--KLLDVEWGYAVLDEGHRIRNPN--AEISLVCKQLQTVHRIIMT-GAPIQNKLS 601 (1231)
Q Consensus 527 ~i~~~~~~~~~VvItTYe~Lr~~~~--~L~~~~wd~VILDEAH~IKN~~--Sk~skalk~L~t~~RllLT-GTPiqNnl~ 601 (1231)
..-..+..+..++|.|++.|..+.. .+.....-|+|||||++|.+.. -++.+.+..++..+-.+|| ||- ...
T Consensus 335 eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqtvmTSATW-P~~-- 411 (629)
T KOG0336|consen 335 EQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQTVMTSATW-PEG-- 411 (629)
T ss_pred hHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCcceeeeecccC-chH--
Confidence 1122245667899999999976542 2344467899999999998754 4566777777776665554 441 100
Q ss_pred HHHHhhhhhcCCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEE
Q 044798 602 ELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLF 681 (1231)
Q Consensus 602 EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~ 681 (1231)
++++...|+ |. |...++-.
T Consensus 412 --------------------------------------------------VrrLa~sY~----Ke-------p~~v~vGs 430 (629)
T KOG0336|consen 412 --------------------------------------------------VRRLAQSYL----KE-------PMIVYVGS 430 (629)
T ss_pred --------------------------------------------------HHHHHHHhh----hC-------ceEEEecc
Confidence 122222221 00 11111111
Q ss_pred ecCCHHHHHHHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhc
Q 044798 682 CSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQ 761 (1231)
Q Consensus 682 ~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~ 761 (1231)
+.|... +. ....+.....+.|+..+..++..+ ..
T Consensus 431 LdL~a~-----------------------------------~s----------VkQ~i~v~~d~~k~~~~~~f~~~m-s~ 464 (629)
T KOG0336|consen 431 LDLVAV-----------------------------------KS----------VKQNIIVTTDSEKLEIVQFFVANM-SS 464 (629)
T ss_pred cceeee-----------------------------------ee----------eeeeEEecccHHHHHHHHHHHHhc-CC
Confidence 111100 00 000011123455665555555554 45
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCC
Q 044798 762 GHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDP 841 (1231)
Q Consensus 762 g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp 841 (1231)
+.|+|||+..+.++|.|..-|...||....|||.-.+..|+.+++.|.++ .++ +|++|+++++||+++...||++||.
T Consensus 465 ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG-~vr-ILvaTDlaSRGlDv~DiTHV~NyDF 542 (629)
T KOG0336|consen 465 NDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSG-EVR-ILVATDLASRGLDVPDITHVYNYDF 542 (629)
T ss_pred CceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcC-ceE-EEEEechhhcCCCchhcceeeccCC
Confidence 78999999999999999999999999999999999999999999999998 454 5889999999999999999999999
Q ss_pred CCCcchHHHHHHhHHhhCCccc
Q 044798 842 DWNPSTDVQARERAWRIGQKQD 863 (1231)
Q Consensus 842 ~WNPs~d~QAigRa~RiGQkk~ 863 (1231)
|-|...|.||+||++|.|.+-.
T Consensus 543 P~nIeeYVHRvGrtGRaGr~G~ 564 (629)
T KOG0336|consen 543 PRNIEEYVHRVGRTGRAGRTGT 564 (629)
T ss_pred CccHHHHHHHhcccccCCCCcc
Confidence 9999999999999999997754
No 81
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.73 E-value=2.7e-16 Score=206.49 Aligned_cols=96 Identities=16% Similarity=0.184 Sum_probs=84.8
Q ss_pred cCCeEEEEeccHHHHHHHHHHHHHcC---------------------------------CcEEEEeCCCCHHHHHHHHHH
Q 044798 761 QGHRVLLFAQTQQMLDILESFLIASG---------------------------------YEYRRMDGLTPVKQRMALIDE 807 (1231)
Q Consensus 761 ~g~KVLVFSQ~~~~LdiLe~~L~~~G---------------------------------i~~~rIdGsts~~eRq~iId~ 807 (1231)
.+.++||||+++...+.+...|+... +.+..+||+++.++|..+.+.
T Consensus 243 ~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHH
Confidence 35799999999999999998887531 114568899999999999999
Q ss_pred HhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhh
Q 044798 808 YNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRI 858 (1231)
Q Consensus 808 Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~Ri 858 (1231)
|+++ .+++ |++|.+.++|||+..++.||+|+.|.+.+.+.|++||++|.
T Consensus 323 fK~G-~Lrv-LVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~ 371 (1490)
T PRK09751 323 LKSG-ELRC-VVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ 371 (1490)
T ss_pred HHhC-CceE-EEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC
Confidence 9998 4554 78899999999999999999999999999999999999985
No 82
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.73 E-value=7.7e-16 Score=191.83 Aligned_cols=333 Identities=18% Similarity=0.172 Sum_probs=224.5
Q ss_pred hhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHH-HhhcCCC-----CcEEEEeCC-cchHHHHHHHHH
Q 044798 399 FNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA-LHFSNMY-----KPSIVVCPV-TLLRQWKREAEK 471 (1231)
Q Consensus 399 ~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~-L~~s~~~-----kpvLIV~P~-sLl~QW~~E~~k 471 (1231)
+..|.|+|+.++.-+ ..+.+.++...||+|||.+|+..+.. +...+.. -.+|.|.|. .|...-.+-+..
T Consensus 20 ~~~~t~~Q~~a~~~i----~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~ 95 (814)
T COG1201 20 FTSLTPPQRYAIPEI----HSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEE 95 (814)
T ss_pred cCCCCHHHHHHHHHH----hCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 567899999999877 57899999999999999997655544 4433212 248999995 555566677776
Q ss_pred Hc--CCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHH
Q 044798 472 WY--PSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLL 549 (1231)
Q Consensus 472 w~--p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~ 549 (1231)
|. -++.|.+-||..... .-.+...+++||+|||+++|...
T Consensus 96 ~~~~~G~~v~vRhGDT~~~--------------------------------------er~r~~~~PPdILiTTPEsL~ll 137 (814)
T COG1201 96 PLRELGIEVAVRHGDTPQS--------------------------------------EKQKMLKNPPHILITTPESLAIL 137 (814)
T ss_pred HHHHcCCccceecCCCChH--------------------------------------HhhhccCCCCcEEEeChhHHHHH
Confidence 65 356666666554321 11223457789999999999654
Q ss_pred H------hhhhcCCccEEEEeCCcccCC--cchHHHHHHHhcc----cccEEEecccCccCChHHHHHhhhhhcCCCCCC
Q 044798 550 G------EKLLDVEWGYAVLDEGHRIRN--PNAEISLVCKQLQ----TVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGV 617 (1231)
Q Consensus 550 ~------~~L~~~~wd~VILDEAH~IKN--~~Sk~skalk~L~----t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~ 617 (1231)
. +.|. +..+||+||.|.+.+ .+++.+..+..|. ...||.||||-- +..-..+||.+...
T Consensus 138 l~~~~~r~~l~--~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~-----~~~~varfL~g~~~-- 208 (814)
T COG1201 138 LNSPKFRELLR--DVRYVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATVG-----PPEEVAKFLVGFGD-- 208 (814)
T ss_pred hcCHHHHHHhc--CCcEEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhccC-----CHHHHHHHhcCCCC--
Confidence 3 2233 467999999999986 4556666666552 357899999942 34444556544311
Q ss_pred hhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHh
Q 044798 618 LPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLA 697 (1231)
Q Consensus 618 ~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~ 697 (1231)
+. ..|......+.++-+.++-......
T Consensus 209 ----------~~------------------------------------~Iv~~~~~k~~~i~v~~p~~~~~~~------- 235 (814)
T COG1201 209 ----------PC------------------------------------EIVDVSAAKKLEIKVISPVEDLIYD------- 235 (814)
T ss_pred ----------ce------------------------------------EEEEcccCCcceEEEEecCCccccc-------
Confidence 00 0011111222222222211110000
Q ss_pred hHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHH
Q 044798 698 SSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDI 777 (1231)
Q Consensus 698 s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~Ldi 777 (1231)
.+ ...+-+..+.++++ +...+|||++++.+.+.
T Consensus 236 -------------------------~~------------------~~~~~~~~i~~~v~----~~~ttLIF~NTR~~aE~ 268 (814)
T COG1201 236 -------------------------EE------------------LWAALYERIAELVK----KHRTTLIFTNTRSGAER 268 (814)
T ss_pred -------------------------cc------------------hhHHHHHHHHHHHh----hcCcEEEEEeChHHHHH
Confidence 00 01122233334443 34489999999999999
Q ss_pred HHHHHHHcC-CcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHH
Q 044798 778 LESFLIASG-YEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAW 856 (1231)
Q Consensus 778 Le~~L~~~G-i~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~ 856 (1231)
+...|+..+ ..+..-||+.+.++|..+-++|.++. .++ +++|.....|||.-..+.||.|..|-.-+...||+||++
T Consensus 269 l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~-lra-vV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQRiGRsg 346 (814)
T COG1201 269 LAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGE-LKA-VVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQRIGRAG 346 (814)
T ss_pred HHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCC-ceE-EEEccchhhccccCCceEEEEeCCcHHHHHHhHhccccc
Confidence 999999986 89999999999999999999999995 777 567889999999999999999999999999999999997
Q ss_pred h-hCCcccEEEEEEEeCCCHHHHHHHHHHHHHH
Q 044798 857 R-IGQKQDVTVYRLITRGTIEEKVYHRQIYKHF 888 (1231)
Q Consensus 857 R-iGQkk~V~VYRLit~gTIEEkIy~rQ~~K~~ 888 (1231)
+ +|. +.-+++++.+ .++.+--+.+.+..
T Consensus 347 Hr~~~---~Skg~ii~~~-r~dllE~~vi~~~a 375 (814)
T COG1201 347 HRLGE---VSKGIIIAED-RDDLLECLVLADLA 375 (814)
T ss_pred cccCC---cccEEEEecC-HHHHHHHHHHHHHH
Confidence 4 443 4446666666 66655555554433
No 83
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.72 E-value=5.9e-16 Score=186.50 Aligned_cols=303 Identities=18% Similarity=0.242 Sum_probs=200.6
Q ss_pred hhchHHHHHHHHHHHHHHcCCC--cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcc-hHHHHHHHHHHcCC-
Q 044798 400 NNLFDYQKVGVQWLWELHCQRA--GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTL-LRQWKREAEKWYPS- 475 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~--GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sL-l~QW~~E~~kw~p~- 475 (1231)
-.|...|+.++.-+..=..... .=+|--++|+|||+.|+..+......| ..+.+.+|+.+ ..|-.+.|.+|+++
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G--~Q~ALMAPTEILA~QH~~~~~~~l~~~ 338 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG--YQAALMAPTEILAEQHYESLRKWLEPL 338 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC--CeeEEeccHHHHHHHHHHHHHHHhhhc
Confidence 3578899999987765333322 336667899999998765555554443 67889999854 56889999999974
Q ss_pred -CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhh
Q 044798 476 -FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLL 554 (1231)
Q Consensus 476 -lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~ 554 (1231)
++|.++.|+......+ .....+.....++||.|+..+.....
T Consensus 339 ~i~V~lLtG~~kgk~r~----------------------------------~~l~~l~~G~~~ivVGTHALiQd~V~--- 381 (677)
T COG1200 339 GIRVALLTGSLKGKARK----------------------------------EILEQLASGEIDIVVGTHALIQDKVE--- 381 (677)
T ss_pred CCeEEEeecccchhHHH----------------------------------HHHHHHhCCCCCEEEEcchhhhccee---
Confidence 6777777765432211 24556666778999999998865433
Q ss_pred cCCccEEEEeCCcccCCcchHHHHHHHhc-c-cccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccC
Q 044798 555 DVEWGYAVLDEGHRIRNPNAEISLVCKQL-Q-TVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVG 632 (1231)
Q Consensus 555 ~~~wd~VILDEAH~IKN~~Sk~skalk~L-~-t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g 632 (1231)
-.+..+||+||=|++ +...-..+..- . .+|.|+||||||+..+.= +. |
T Consensus 382 F~~LgLVIiDEQHRF---GV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAl--t~------------------f------- 431 (677)
T COG1200 382 FHNLGLVIIDEQHRF---GVHQRLALREKGEQNPHVLVMTATPIPRTLAL--TA------------------F------- 431 (677)
T ss_pred ecceeEEEEeccccc---cHHHHHHHHHhCCCCCcEEEEeCCCchHHHHH--HH------------------h-------
Confidence 345789999999998 34444444443 4 689999999999876541 00 0
Q ss_pred CCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCce-EEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcch
Q 044798 633 GYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKT-EHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNS 711 (1231)
Q Consensus 633 ~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~-e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~ 711 (1231)
+..+. .+..+||+.. ...-+|-....-.++|+.+..
T Consensus 432 gDldv-----------------------------S~IdElP~GRkpI~T~~i~~~~~~~v~e~i~~-------------- 468 (677)
T COG1200 432 GDLDV-----------------------------SIIDELPPGRKPITTVVIPHERRPEVYERIRE-------------- 468 (677)
T ss_pred ccccc-----------------------------hhhccCCCCCCceEEEEeccccHHHHHHHHHH--------------
Confidence 00010 1335688763 322222222222333432211
Q ss_pred hHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHH--------HHHHHHHHHH
Q 044798 712 LYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQ--------MLDILESFLI 783 (1231)
Q Consensus 712 l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~--------~LdiLe~~L~ 783 (1231)
-..+|+++.+.|.-.. ....+...|+
T Consensus 469 ----------------------------------------------ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~ 502 (677)
T COG1200 469 ----------------------------------------------EIAKGRQAYVVCPLIEESEKLELQAAEELYEELK 502 (677)
T ss_pred ----------------------------------------------HHHcCCEEEEEeccccccccchhhhHHHHHHHHH
Confidence 1123445544444322 1222223333
Q ss_pred Hc--CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCC-CCcchHHHHHHhHHhhCC
Q 044798 784 AS--GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPD-WNPSTDVQARERAWRIGQ 860 (1231)
Q Consensus 784 ~~--Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~-WNPs~d~QAigRa~RiGQ 860 (1231)
.. ++++..+||.|+.++++.++.+|+++ .+.| |++|-|..+|+|+++|+.+||+++. +--+..-|-+||++|-+.
T Consensus 503 ~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~-e~~I-LVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~ 580 (677)
T COG1200 503 SFLPELKVGLVHGRMKPAEKDAVMEAFKEG-EIDI-LVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDL 580 (677)
T ss_pred HHcccceeEEEecCCChHHHHHHHHHHHcC-CCcE-EEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCc
Confidence 22 57889999999999999999999998 4455 7788899999999999999999986 678889999999999554
Q ss_pred cc
Q 044798 861 KQ 862 (1231)
Q Consensus 861 kk 862 (1231)
..
T Consensus 581 qS 582 (677)
T COG1200 581 QS 582 (677)
T ss_pred ce
Confidence 43
No 84
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.71 E-value=1.5e-15 Score=177.81 Aligned_cols=85 Identities=21% Similarity=0.321 Sum_probs=71.6
Q ss_pred cCCeEEEEeccHHHHHHHHHHHHHcC--CcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEE
Q 044798 761 QGHRVLLFAQTQQMLDILESFLIASG--YEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVII 838 (1231)
Q Consensus 761 ~g~KVLVFSQ~~~~LdiLe~~L~~~G--i~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi 838 (1231)
.+.|+||||++...++.+...|+..| +.+..++|.++..+|.+.. . ..+|++|+++++|||+... .||
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~~-------~-~~iLVaTdv~~rGiDi~~~-~vi- 340 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERAM-------Q-FDILLGTSTVDVGVDFKRD-WLI- 340 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHhc-------c-CCEEEEecHHhcccCCCCc-eEE-
Confidence 46799999999999999999999865 5788999999999987653 2 3468899999999999864 666
Q ss_pred cCCCCCcchHHHHHHhHH
Q 044798 839 FDPDWNPSTDVQARERAW 856 (1231)
Q Consensus 839 ~Dp~WNPs~d~QAigRa~ 856 (1231)
++ +-++..|+||+||++
T Consensus 341 ~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 341 FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred EC-CCCHHHHhhhcccCC
Confidence 66 568899999999974
No 85
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.71 E-value=1.6e-15 Score=183.28 Aligned_cols=314 Identities=16% Similarity=0.195 Sum_probs=216.9
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeE
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHV 478 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV 478 (1231)
...+|-|.++|..+ ..+..+|.-..+|-||++..- |-++.. .|.+|||.|. +||...+..+... ++.+
T Consensus 16 ~~FR~gQ~evI~~~----l~g~d~lvvmPTGgGKSlCyQ--iPAll~---~G~TLVVSPLiSLM~DQV~~l~~~--Gi~A 84 (590)
T COG0514 16 ASFRPGQQEIIDAL----LSGKDTLVVMPTGGGKSLCYQ--IPALLL---EGLTLVVSPLISLMKDQVDQLEAA--GIRA 84 (590)
T ss_pred cccCCCHHHHHHHH----HcCCcEEEEccCCCCcchHhh--hHHHhc---CCCEEEECchHHHHHHHHHHHHHc--Ccee
Confidence 45788899999887 556899999999999998632 223322 5699999994 9999999999875 3566
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHH--HHhhhhcC
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRL--LGEKLLDV 556 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~--~~~~L~~~ 556 (1231)
..++++.. ...|..+.........+++..+++.+.. ..+.|...
T Consensus 85 ~~lnS~l~----------------------------------~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~ 130 (590)
T COG0514 85 AYLNSTLS----------------------------------REERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRL 130 (590)
T ss_pred ehhhcccC----------------------------------HHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhC
Confidence 55554422 2233345555566667899999999964 34567788
Q ss_pred CccEEEEeCCcccCCc-------chHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhcccc
Q 044798 557 EWGYAVLDEGHRIRNP-------NAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~-------~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI 629 (1231)
...++|+||||.+-.. ...+......+....+++||||--.--..++-..+..-.+. .|...|..|
T Consensus 131 ~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~------~~~~sfdRp- 203 (590)
T COG0514 131 PISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDAN------IFRGSFDRP- 203 (590)
T ss_pred CCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcc------eEEecCCCc-
Confidence 8999999999988543 33455555555666778887775333333333332221110 000000000
Q ss_pred ccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCc
Q 044798 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSR 709 (1231)
Q Consensus 630 ~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~ 709 (1231)
. -.|. ...
T Consensus 204 --------------------------------------------------------N---i~~~-v~~------------ 211 (590)
T COG0514 204 --------------------------------------------------------N---LALK-VVE------------ 211 (590)
T ss_pred --------------------------------------------------------h---hhhh-hhh------------
Confidence 0 0000 000
Q ss_pred chhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHH-HHHhcCCeEEEEeccHHHHHHHHHHHHHcCCc
Q 044798 710 NSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLK-VWKDQGHRVLLFAQTQQMLDILESFLIASGYE 788 (1231)
Q Consensus 710 ~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk-~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~ 788 (1231)
..+++.+.+ .|. .....+...||||.++...+.|...|...|++
T Consensus 212 ---------------------------------~~~~~~q~~--fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~ 256 (590)
T COG0514 212 ---------------------------------KGEPSDQLA--FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGIS 256 (590)
T ss_pred ---------------------------------cccHHHHHH--HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCc
Confidence 001111111 111 11233446899999999999999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEE
Q 044798 789 YRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYR 868 (1231)
Q Consensus 789 ~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYR 868 (1231)
...+||+++..+|+..-+.|.+++ ..++++|.|.|.|||=+....||+||+|-+...|.|=+||++|-|....+.+
T Consensus 257 a~~YHaGl~~~eR~~~q~~f~~~~--~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~a~ail-- 332 (590)
T COG0514 257 AGAYHAGLSNEERERVQQAFLNDE--IKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLPAEAIL-- 332 (590)
T ss_pred eEEecCCCCHHHHHHHHHHHhcCC--CcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCcceEEE--
Confidence 999999999999999999999884 4457889999999999999999999999999999999999999998766544
Q ss_pred EEeCCCHH
Q 044798 869 LITRGTIE 876 (1231)
Q Consensus 869 Lit~gTIE 876 (1231)
|...+.+.
T Consensus 333 l~~~~D~~ 340 (590)
T COG0514 333 LYSPEDIR 340 (590)
T ss_pred eeccccHH
Confidence 55555444
No 86
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.71 E-value=2e-17 Score=181.39 Aligned_cols=303 Identities=17% Similarity=0.165 Sum_probs=197.6
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHh-hcCCCCcEEEEeCC----cchHHHHHHHHHHcCC
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH-FSNMYKPSIVVCPV----TLLRQWKREAEKWYPS 475 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~-~s~~~kpvLIV~P~----sLl~QW~~E~~kw~p~ 475 (1231)
..-|.|.+++.-. ..++..+.-.-.|.|||-.-+..+.... .....-..+|++|. -..+|.+.++.++..
T Consensus 107 kPSPiQeesIPia----LtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~- 181 (459)
T KOG0326|consen 107 KPSPIQEESIPIA----LTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLG- 181 (459)
T ss_pred CCCCcccccccee----ecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccC-
Confidence 3457788777544 2344444456789999976443333322 22233467999994 345678889988874
Q ss_pred CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--h
Q 044798 476 FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK--L 553 (1231)
Q Consensus 476 lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~--L 553 (1231)
..|.+..|+.....- ++ + +....|++|.|++++....+. -
T Consensus 182 i~vmvttGGT~lrDD------------------------------------I~-R-l~~~VH~~vgTPGRIlDL~~KgVa 223 (459)
T KOG0326|consen 182 IKVMVTTGGTSLRDD------------------------------------IM-R-LNQTVHLVVGTPGRILDLAKKGVA 223 (459)
T ss_pred eEEEEecCCcccccc------------------------------------ee-e-ecCceEEEEcCChhHHHHHhcccc
Confidence 677666665431100 00 0 234568999999999887654 1
Q ss_pred hcCCccEEEEeCCcccCCcchH--HHHHHHhccccc-EEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccc
Q 044798 554 LDVEWGYAVLDEGHRIRNPNAE--ISLVCKQLQTVH-RIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIT 630 (1231)
Q Consensus 554 ~~~~wd~VILDEAH~IKN~~Sk--~skalk~L~t~~-RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~ 630 (1231)
...+..++|+|||+++.+..-+ +.+.+.-|...+ .++.|||-- . +...|...+..
T Consensus 224 ~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~rQillySATFP-~------------------tVk~Fm~~~l~--- 281 (459)
T KOG0326|consen 224 DLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKERQILLYSATFP-L------------------TVKGFMDRHLK--- 281 (459)
T ss_pred cchhceEEEechhhhhhchhhhhHHHHHHHhCCccceeeEEecccc-h------------------hHHHHHHHhcc---
Confidence 2234668999999999765432 334444443332 234455520 0 01111111100
Q ss_pred cCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcc
Q 044798 631 VGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRN 710 (1231)
Q Consensus 631 ~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~ 710 (1231)
.|| +.-+.-+||..-...|
T Consensus 282 --------------------------kPy-----------------~INLM~eLtl~GvtQy------------------ 300 (459)
T KOG0326|consen 282 --------------------------KPY-----------------EINLMEELTLKGVTQY------------------ 300 (459)
T ss_pred --------------------------Ccc-----------------eeehhhhhhhcchhhh------------------
Confidence 011 1111111111111111
Q ss_pred hhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEE
Q 044798 711 SLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYR 790 (1231)
Q Consensus 711 ~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~ 790 (1231)
|...+.+.|+-.|..|+..+.-+ ..||||++....++|..-+...||++.
T Consensus 301 ----------------------------YafV~e~qKvhCLntLfskLqIN--QsIIFCNS~~rVELLAkKITelGyscy 350 (459)
T KOG0326|consen 301 ----------------------------YAFVEERQKVHCLNTLFSKLQIN--QSIIFCNSTNRVELLAKKITELGYSCY 350 (459)
T ss_pred ----------------------------eeeechhhhhhhHHHHHHHhccc--ceEEEeccchHhHHHHHHHHhccchhh
Confidence 11223455666677777665433 789999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCc
Q 044798 791 RMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQK 861 (1231)
Q Consensus 791 rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQk 861 (1231)
.+|..|.++.|..+...|.++ .|+. |++|+..-+|++++++|.||+||.|-|+.+|.+|+||.+|+|--
T Consensus 351 yiHakM~Q~hRNrVFHdFr~G-~crn-LVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhl 419 (459)
T KOG0326|consen 351 YIHAKMAQEHRNRVFHDFRNG-KCRN-LVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHL 419 (459)
T ss_pred HHHHHHHHhhhhhhhhhhhcc-ccce-eeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCc
Confidence 999999999999999999998 5666 77899999999999999999999999999999999999999953
No 87
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.70 E-value=9.1e-16 Score=200.99 Aligned_cols=280 Identities=15% Similarity=0.167 Sum_probs=177.9
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCC--Ce
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPS--FH 477 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~--lr 477 (1231)
.++|+|..++..+ ..+...++...+|+|||.-++.++..+. .....+|||+|. .|+.|+.+.|..++.. +.
T Consensus 78 ~p~~iQ~~~i~~i----l~G~d~vi~ApTGsGKT~f~l~~~~~l~--~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~ 151 (1171)
T TIGR01054 78 EPWSIQKMWAKRV----LRGDSFAIIAPTGVGKTTFGLAMSLFLA--KKGKRCYIILPTTLLVIQVAEKISSLAEKAGVG 151 (1171)
T ss_pred CCcHHHHHHHHHH----hCCCeEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCc
Confidence 5789999988766 4677889999999999975544333332 234689999995 8889999999998753 22
Q ss_pred E---EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhh
Q 044798 478 V---ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLL 554 (1231)
Q Consensus 478 V---~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~ 554 (1231)
+ .++||........ ..........++|+|+|++.+..+...+.
T Consensus 152 ~~~i~~~~Gg~~~~e~~----------------------------------~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~ 197 (1171)
T TIGR01054 152 TVNIGAYHSRLPTKEKK----------------------------------EFMERIENGDFDILITTTMFLSKNYDELG 197 (1171)
T ss_pred eeeeeeecCCCCHHHHH----------------------------------HHHHHHhcCCCCEEEECHHHHHHHHHHhc
Confidence 2 2355543221100 01222233457999999999988777665
Q ss_pred cCCccEEEEeCCcccCCcchH--------------HHHHHH----------------------hcccccE---EEecccC
Q 044798 555 DVEWGYAVLDEGHRIRNPNAE--------------ISLVCK----------------------QLQTVHR---IIMTGAP 595 (1231)
Q Consensus 555 ~~~wd~VILDEAH~IKN~~Sk--------------~skalk----------------------~L~t~~R---llLTGTP 595 (1231)
. .++++|+||||++....-. +..++. .+....+ ++.|||+
T Consensus 198 ~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~ 276 (1171)
T TIGR01054 198 P-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATG 276 (1171)
T ss_pred C-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCC
Confidence 5 8999999999999652211 112111 1111111 3458885
Q ss_pred ccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCc
Q 044798 596 IQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKK 675 (1231)
Q Consensus 596 iqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K 675 (1231)
.+......+ +...++ +..+.. ......
T Consensus 277 ~p~~~~~~l------~r~ll~------------~~v~~~-----------------------------------~~~~r~ 303 (1171)
T TIGR01054 277 RPRGKRAKL------FRELLG------------FEVGGG-----------------------------------SDTLRN 303 (1171)
T ss_pred CccccHHHH------cccccc------------eEecCc-----------------------------------cccccc
Confidence 443222110 000000 000000 000001
Q ss_pred eEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHH
Q 044798 676 TEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVL 755 (1231)
Q Consensus 676 ~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLL 755 (1231)
..+ .++.. ..+...|.++|
T Consensus 304 I~~-~~~~~------------------------------------------------------------~~~~~~L~~ll 322 (1171)
T TIGR01054 304 VVD-VYVED------------------------------------------------------------EDLKETLLEIV 322 (1171)
T ss_pred eEE-EEEec------------------------------------------------------------ccHHHHHHHHH
Confidence 111 11100 00122344555
Q ss_pred HHHHhcCCeEEEEeccH---HHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEe---ccccccccC
Q 044798 756 KVWKDQGHRVLLFAQTQ---QMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILT---TKVGGLGTN 829 (1231)
Q Consensus 756 k~~~~~g~KVLVFSQ~~---~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlS---TkvGg~GLN 829 (1231)
+.. +..+|||++.. ..++.|..+|...|+++..+||.++ +..++.|.++ .+.|++.+ |+++++|||
T Consensus 323 ~~l---~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G-~~~vLVata~~tdv~aRGID 394 (1171)
T TIGR01054 323 KKL---GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKP----KEDYEKFAEG-EIDVLIGVASYYGTLVRGLD 394 (1171)
T ss_pred HHc---CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCC----HHHHHHHHcC-CCCEEEEeccccCcccccCC
Confidence 433 56899999998 9999999999999999999999996 3689999998 67776665 699999999
Q ss_pred CCC-CCEEEEcCCCC
Q 044798 830 LTG-ANRVIIFDPDW 843 (1231)
Q Consensus 830 Lt~-AnrVIi~Dp~W 843 (1231)
++. .++||+||+|-
T Consensus 395 ip~~V~~vI~~~~P~ 409 (1171)
T TIGR01054 395 LPERVRYAVFLGVPK 409 (1171)
T ss_pred CCccccEEEEECCCC
Confidence 998 79999999884
No 88
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.69 E-value=1.9e-16 Score=196.27 Aligned_cols=124 Identities=21% Similarity=0.281 Sum_probs=113.5
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccc
Q 044798 744 RSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKV 823 (1231)
Q Consensus 744 ~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkv 823 (1231)
...|+..|.+||..+... .++||||+....+|.|..-|...||.+..+||..++..|...|+.|+++. ..+|++|++
T Consensus 596 e~eKf~kL~eLl~e~~e~-~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~--~~LLvaTsv 672 (997)
T KOG0334|consen 596 ENEKFLKLLELLGERYED-GKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGV--VNLLVATSV 672 (997)
T ss_pred chHHHHHHHHHHHHHhhc-CCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccC--ceEEEehhh
Confidence 467889999999998874 59999999999999999999999999999999999999999999999975 777899999
Q ss_pred cccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeC
Q 044798 824 GGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITR 872 (1231)
Q Consensus 824 Gg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~ 872 (1231)
.++||+...-..||+||.+--..+|.+|.||++|.|.+- ..|.|+..
T Consensus 673 varGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg--~AvtFi~p 719 (997)
T KOG0334|consen 673 VARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKG--AAVTFITP 719 (997)
T ss_pred hhcccccccceEEEEcccchhHHHHHHHhcccccCCccc--eeEEEeCh
Confidence 999999999999999999999999999999999999877 55556665
No 89
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.68 E-value=5.6e-16 Score=188.47 Aligned_cols=350 Identities=15% Similarity=0.133 Sum_probs=220.4
Q ss_pred ChhhhhhchHHHHHHHHHHHHHHcCC-CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC-CcchHHHHHHHHHH
Q 044798 395 PESIFNNLFDYQKVGVQWLWELHCQR-AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP-VTLLRQWKREAEKW 472 (1231)
Q Consensus 395 P~~i~~~L~pyQkegV~wL~el~~~~-~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P-~sLl~QW~~E~~kw 472 (1231)
|......+++||..+|+.+.+...++ ...+|...+|+|||.+||+++..|+.++..+++|+++- ..|+.|=...|..+
T Consensus 159 ~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~ 238 (875)
T COG4096 159 DIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDF 238 (875)
T ss_pred cccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHh
Confidence 44445578999999999999876654 45899999999999999999999999999999999999 58899999999999
Q ss_pred cCCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh
Q 044798 473 YPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK 552 (1231)
Q Consensus 473 ~p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~ 552 (1231)
.|......+..... ....+.|+|.||.++......
T Consensus 239 ~P~~~~~n~i~~~~---------------------------------------------~~~s~~i~lsTyqt~~~~~~~ 273 (875)
T COG4096 239 LPFGTKMNKIEDKK---------------------------------------------GDTSSEIYLSTYQTMTGRIEQ 273 (875)
T ss_pred CCCccceeeeeccc---------------------------------------------CCcceeEEEeehHHHHhhhhc
Confidence 99876554432110 011357999999999765432
Q ss_pred -------hhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhh
Q 044798 553 -------LLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEF 625 (1231)
Q Consensus 553 -------L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f 625 (1231)
+....||+||+||||+-- ..-++.+...-...+++|||||-..--. .++..|.
T Consensus 274 ~~~~~~~f~~g~FDlIvIDEaHRgi---~~~~~~I~dYFdA~~~gLTATP~~~~d~--------------~T~~~F~--- 333 (875)
T COG4096 274 KEDEYRRFGPGFFDLIVIDEAHRGI---YSEWSSILDYFDAATQGLTATPKETIDR--------------STYGFFN--- 333 (875)
T ss_pred cccccccCCCCceeEEEechhhhhH---HhhhHHHHHHHHHHHHhhccCccccccc--------------ccccccC---
Confidence 344469999999999831 1122233333455667889999652111 1111121
Q ss_pred ccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEE-EEe--------cCCHHHHHHHHHHH
Q 044798 626 AVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHV-LFC--------SLTEEQRAVYRAFL 696 (1231)
Q Consensus 626 ~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~v-v~~--------~Lt~~Qr~lY~~~l 696 (1231)
..|+-.-. |.+.+..-+ -.|++...+ +.+ .++ ++.+++...+
T Consensus 334 g~Pt~~Ys------------------leeAV~DGf----------Lvpy~vi~i~~~~~~~G~~~~~~s-erek~~g~~i 384 (875)
T COG4096 334 GEPTYAYS------------------LEEAVEDGF----------LVPYKVIRIDTDFDLDGWKPDAGS-EREKLQGEAI 384 (875)
T ss_pred CCcceeec------------------HHHHhhccc----------cCCCCceEEeeeccccCcCcCccc-hhhhhhcccc
Confidence 33332111 111111100 012221111 111 111 1111111111
Q ss_pred hhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHh---cC---CeEEEEec
Q 044798 697 ASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKD---QG---HRVLLFAQ 770 (1231)
Q Consensus 697 ~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~---~g---~KVLVFSQ 770 (1231)
.. ....+.... -+-....... ...+...|..+.. .| .|+||||.
T Consensus 385 ~~---------dd~~~~~~d--------------------~dr~~v~~~~-~~~V~r~~~~~l~~~~~g~~~~KTIvFa~ 434 (875)
T COG4096 385 DE---------DDQNFEARD--------------------FDRTLVIPFR-TETVARELTEYLKRGATGDEIGKTIVFAK 434 (875)
T ss_pred Cc---------ccccccccc--------------------cchhccccch-HHHHHHHHHHHhccccCCCccCceEEEee
Confidence 00 000000000 0000001111 2223333333322 23 49999999
Q ss_pred cHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCc
Q 044798 771 TQQMLDILESFLIAS-----GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNP 845 (1231)
Q Consensus 771 ~~~~LdiLe~~L~~~-----Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNP 845 (1231)
....++.|...|... |-=+..|+|... +-+..|+.|......-.+.+|.+..-.|+|.+.+-.+|++-+--+-
T Consensus 435 n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~VrSk 512 (875)
T COG4096 435 NHDHAERIREALVNEYPEYNGRYAMKITGDAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRKVRSK 512 (875)
T ss_pred CcHHHHHHHHHHHHhCccccCceEEEEeccch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhhhhhH
Confidence 999999999999765 233567899874 4566899998866666778899999999999999999999999999
Q ss_pred chHHHHHHhHHhh-------CCccc-EEEEEEE
Q 044798 846 STDVQARERAWRI-------GQKQD-VTVYRLI 870 (1231)
Q Consensus 846 s~d~QAigRa~Ri-------GQkk~-V~VYRLi 870 (1231)
..++|-+||.-|+ ||.|. .+|+.++
T Consensus 513 tkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~ 545 (875)
T COG4096 513 TKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFV 545 (875)
T ss_pred HHHHHHhcCccccCccccCccccceeEEEEEhh
Confidence 9999999999996 35554 6666654
No 90
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.67 E-value=6.8e-15 Score=187.50 Aligned_cols=332 Identities=17% Similarity=0.221 Sum_probs=226.0
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHc---C-C
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWY---P-S 475 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~---p-~ 475 (1231)
.||+||.++++.+ ..+...|+.-.||+|||...+..|..........+.|+|-|. .|.+.....|.+|. | .
T Consensus 70 ~lY~HQ~~A~~~~----~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~ 145 (851)
T COG1205 70 RLYSHQVDALRLI----REGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGK 145 (851)
T ss_pred cccHHHHHHHHHH----HCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCc
Confidence 4999999999988 557899999999999999977666665555666689999995 77778999999886 3 3
Q ss_pred CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHh----
Q 044798 476 FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGE---- 551 (1231)
Q Consensus 476 lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~---- 551 (1231)
+.+.+|+|..... + ...+..+.++|++|||.++....-
T Consensus 146 v~~~~y~Gdt~~~--~------------------------------------r~~~~~~pp~IllTNpdMLh~~llr~~~ 187 (851)
T COG1205 146 VTFGRYTGDTPPE--E------------------------------------RRAIIRNPPDILLTNPDMLHYLLLRNHD 187 (851)
T ss_pred ceeeeecCCCChH--H------------------------------------HHHHHhCCCCEEEeCHHHHHHHhccCcc
Confidence 4555665543311 1 113356778999999999966321
Q ss_pred --hhhcCCccEEEEeCCcccCC-cchHHHHHHHhccc--------ccEEEecccCccCChHHHHHhhhhhcCCCCCChhH
Q 044798 552 --KLLDVEWGYAVLDEGHRIRN-PNAEISLVCKQLQT--------VHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPV 620 (1231)
Q Consensus 552 --~L~~~~wd~VILDEAH~IKN-~~Sk~skalk~L~t--------~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~ 620 (1231)
.+...++.|||+||+|.++. .+|.++..++.|.- ...++.|||- .++.|+-. ..
T Consensus 188 ~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~--~np~e~~~-------------~l 252 (851)
T COG1205 188 AWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPLQIICTSATL--ANPGEFAE-------------EL 252 (851)
T ss_pred hHHHHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCceEEEEeccc--cChHHHHH-------------Hh
Confidence 12223489999999999986 57788877777732 3347788884 22222211 00
Q ss_pred HHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEE-EEEecCCHHHHHHHHHHHhhH
Q 044798 621 FEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEH-VLFCSLTEEQRAVYRAFLASS 699 (1231)
Q Consensus 621 F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~-vv~~~Lt~~Qr~lY~~~l~s~ 699 (1231)
|...|..++...+ -|.-..+ +++-+........
T Consensus 253 ~~~~f~~~v~~~g--------------------------------------~~~~~~~~~~~~p~~~~~~~~-------- 286 (851)
T COG1205 253 FGRDFEVPVDEDG--------------------------------------SPRGLRYFVRREPPIRELAES-------- 286 (851)
T ss_pred cCCcceeeccCCC--------------------------------------CCCCceEEEEeCCcchhhhhh--------
Confidence 1111222211111 1222222 2222222111100
Q ss_pred HHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHH
Q 044798 700 EVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILE 779 (1231)
Q Consensus 700 ~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe 779 (1231)
..-.+...+..++......|-++|+|+.++..+.++.
T Consensus 287 -------------------------------------------~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~ 323 (851)
T COG1205 287 -------------------------------------------IRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLY 323 (851)
T ss_pred -------------------------------------------cccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhh
Confidence 0123444566666666778899999999999999986
Q ss_pred ----HHHHHcC----CcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCC-CcchHHH
Q 044798 780 ----SFLIASG----YEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDW-NPSTDVQ 850 (1231)
Q Consensus 780 ----~~L~~~G----i~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~W-NPs~d~Q 850 (1231)
..+...+ ..+..+.|.+...+|..+...|+.+. -.++++|.+.-.|+++-..+.||.+-.|- .-..++|
T Consensus 324 ~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~--~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q 401 (851)
T COG1205 324 LSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGE--LLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQ 401 (851)
T ss_pred hchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCC--ccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHH
Confidence 3444445 56888999999999999999999985 44578999999999999999999999887 7789999
Q ss_pred HHHhHHhhCCcccEEEEEEEeCCCHHHHHHHH
Q 044798 851 ARERAWRIGQKQDVTVYRLITRGTIEEKVYHR 882 (1231)
Q Consensus 851 AigRa~RiGQkk~V~VYRLit~gTIEEkIy~r 882 (1231)
+.||++|-||.-. ++...-.+-++..+...
T Consensus 402 ~~GRaGR~~~~~l--~~~v~~~~~~d~yy~~~ 431 (851)
T COG1205 402 RAGRAGRRGQESL--VLVVLRSDPLDSYYLRH 431 (851)
T ss_pred hhhhccCCCCCce--EEEEeCCCccchhhhhC
Confidence 9999999995433 33233366677655443
No 91
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.67 E-value=1.1e-14 Score=183.12 Aligned_cols=355 Identities=18% Similarity=0.198 Sum_probs=196.6
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeEE
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHVE 479 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV~ 479 (1231)
.|.++|.+++..+.... .....+|...+|+|||...+..+...... .+.+||+||. .|+.||.+.|.++++ .++.
T Consensus 144 ~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--g~~vLvLvPt~~L~~Q~~~~l~~~fg-~~v~ 219 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--GKQALVLVPEIALTPQMLARFRARFG-APVA 219 (679)
T ss_pred CCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc--CCeEEEEeCcHHHHHHHHHHHHHHhC-CCEE
Confidence 58999999998885532 34568899999999999887766555443 3689999996 788999999999874 6788
Q ss_pred EEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcCCcc
Q 044798 480 LLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWG 559 (1231)
Q Consensus 480 il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~~wd 559 (1231)
++|+........ ..| ..+.....+|||+|+..+. +.-.+++
T Consensus 220 ~~~s~~s~~~r~------------------------------~~~----~~~~~g~~~IVVgTrsal~-----~p~~~l~ 260 (679)
T PRK05580 220 VLHSGLSDGERL------------------------------DEW----RKAKRGEAKVVIGARSALF-----LPFKNLG 260 (679)
T ss_pred EEECCCCHHHHH------------------------------HHH----HHHHcCCCCEEEeccHHhc-----ccccCCC
Confidence 888764321111 112 2233445689999998763 1223678
Q ss_pred EEEEeCCcccCC--cchH------HHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhcccccc
Q 044798 560 YAVLDEGHRIRN--PNAE------ISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITV 631 (1231)
Q Consensus 560 ~VILDEAH~IKN--~~Sk------~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~ 631 (1231)
+||+||+|...- .... +............+++|+||....+... ..|.+... .....+
T Consensus 261 liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~il~SATps~~s~~~~-------~~g~~~~~-~l~~r~------ 326 (679)
T PRK05580 261 LIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVVLGSATPSLESLANA-------QQGRYRLL-RLTKRA------ 326 (679)
T ss_pred EEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEEEEcCCCCHHHHHHH-------hccceeEE-Eecccc------
Confidence 999999997632 1111 1111122344566889999953322111 00100000 000000
Q ss_pred CCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHH---------HHHHHHHHhhHHHH
Q 044798 632 GGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQ---------RAVYRAFLASSEVE 702 (1231)
Q Consensus 632 g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Q---------r~lY~~~l~s~~~~ 702 (1231)
....+| .+..+.|.... ..+++.+ .
T Consensus 327 ------------------------------------~~~~~p----~v~~id~~~~~~~~~~~~ls~~l~~~i------~ 360 (679)
T PRK05580 327 ------------------------------------GGARLP----EVEIIDMRELLRGENGSFLSPPLLEAI------K 360 (679)
T ss_pred ------------------------------------ccCCCC----eEEEEechhhhhhcccCCCCHHHHHHH------H
Confidence 000111 11112221110 0111111 1
Q ss_pred HHhhcCcchhHH-------HHHHHHHhCChhhhhhhhhcCCCCC-CCC------CcchHHHHHHHHHHHHHhcCCeEEEE
Q 044798 703 QILDGSRNSLYG-------IDVMRKICNHPDLLEREQSCQIPDY-GNP------ERSEKMKVVAQVLKVWKDQGHRVLLF 768 (1231)
Q Consensus 703 ~il~~~~~~l~~-------i~~LRkicnHPdLl~~~~~~~~~d~-~~~------~~S~Kl~~L~eLLk~~~~~g~KVLVF 768 (1231)
..+....+.+.- -..+..-|.+. ..+..|..+.. ... ...+.... +-..|-..|.. .|
T Consensus 361 ~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~---~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~---~~~~Cp~Cg~~--~l 432 (679)
T PRK05580 361 QRLERGEQVLLFLNRRGYAPFLLCRDCGWV---AECPHCDASLTLHRFQRRLRCHHCGYQEP---IPKACPECGST--DL 432 (679)
T ss_pred HHHHcCCeEEEEEcCCCCCCceEhhhCcCc---cCCCCCCCceeEECCCCeEECCCCcCCCC---CCCCCCCCcCC--ee
Confidence 111111111100 01122233222 11223322210 000 00000000 00001111222 23
Q ss_pred eccHHHHHHHHHHHHHc--CCcEEEEeCCCC--HHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCC--
Q 044798 769 AQTQQMLDILESFLIAS--GYEYRRMDGLTP--VKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPD-- 842 (1231)
Q Consensus 769 SQ~~~~LdiLe~~L~~~--Gi~~~rIdGsts--~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~-- 842 (1231)
..+..-.+.+++.|... ++++.++||++. ..+++.+++.|.++ ++.| |+.|++.+.|+|++.++.|+++|.+
T Consensus 433 ~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g-~~~I-LVgT~~iakG~d~p~v~lV~il~aD~~ 510 (679)
T PRK05580 433 VPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARG-EADI-LIGTQMLAKGHDFPNVTLVGVLDADLG 510 (679)
T ss_pred EEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcC-CCCE-EEEChhhccCCCCCCcCEEEEEcCchh
Confidence 33444566777777775 889999999986 46799999999987 4455 6789999999999999999888765
Q ss_pred -CCc---------chHHHHHHhHHhhCCcccEEEEE
Q 044798 843 -WNP---------STDVQARERAWRIGQKQDVTVYR 868 (1231)
Q Consensus 843 -WNP---------s~d~QAigRa~RiGQkk~V~VYR 868 (1231)
..| ..+.|+.||++|.|....|.+.-
T Consensus 511 l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT 546 (679)
T PRK05580 511 LFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQT 546 (679)
T ss_pred ccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEe
Confidence 233 56899999999988776666544
No 92
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.67 E-value=5.3e-15 Score=187.83 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=93.3
Q ss_pred CCeEEEEeccHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEE
Q 044798 762 GHRVLLFAQTQQMLDILESFLIA---SGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVII 838 (1231)
Q Consensus 762 g~KVLVFSQ~~~~LdiLe~~L~~---~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi 838 (1231)
+.++|||+......+.+...|.. .++.++.+||.++..+|..+++.|.++. .-+|++|+++..||++.++++||.
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~--rkVlVATnIAErgItIp~V~~VID 286 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGR--RKVVLATNIAETSLTIEGIRVVID 286 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCC--eEEEEecchHhhcccccCceEEEE
Confidence 45899999999999999999987 4799999999999999999999998873 456889999999999999999999
Q ss_pred cCCC----CCcch--------------HHHHHHhHHhhCCcccEEEEEEEeCC
Q 044798 839 FDPD----WNPST--------------DVQARERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 839 ~Dp~----WNPs~--------------d~QAigRa~RiGQkk~V~VYRLit~g 873 (1231)
++.+ |||.+ +.||.||++|. ++=.+|||+++.
T Consensus 287 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~---~~G~cyrL~t~~ 336 (819)
T TIGR01970 287 SGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL---EPGVCYRLWSEE 336 (819)
T ss_pred cCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC---CCCEEEEeCCHH
Confidence 8764 66665 68999999886 577889999864
No 93
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.65 E-value=6e-16 Score=152.87 Aligned_cols=120 Identities=28% Similarity=0.481 Sum_probs=111.8
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccc
Q 044798 746 EKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGG 825 (1231)
Q Consensus 746 ~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg 825 (1231)
.|...+.+++......+.++||||.+...++.+...|...++.+..++|.++..+|..+++.|+++. ..+|++|.+++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~ili~t~~~~ 89 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE--IVVLVATDVIA 89 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC--CcEEEEcChhh
Confidence 7889999999987767889999999999999999999998999999999999999999999999975 56678999999
Q ss_pred cccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEE
Q 044798 826 LGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVY 867 (1231)
Q Consensus 826 ~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VY 867 (1231)
+|+|++.+++||+++++|++..+.|++||++|.||+..|++|
T Consensus 90 ~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 90 RGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred cCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 999999999999999999999999999999999998877764
No 94
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.64 E-value=6e-15 Score=167.92 Aligned_cols=308 Identities=19% Similarity=0.214 Sum_probs=203.3
Q ss_pred hHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHH-HHhhcC------CCCcEEEEeCC-cchHHHHHHHHHH--
Q 044798 403 FDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLG-ALHFSN------MYKPSIVVCPV-TLLRQWKREAEKW-- 472 (1231)
Q Consensus 403 ~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~-~L~~s~------~~kpvLIV~P~-sLl~QW~~E~~kw-- 472 (1231)
.-.|..+|..+ ..+...+.-.-+|+|||.+-+..+. .+.... .....+|++|+ .|..|-.+.|.+.
T Consensus 43 TlIQs~aIpla----LEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~ 118 (569)
T KOG0346|consen 43 TLIQSSAIPLA----LEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVE 118 (569)
T ss_pred chhhhcccchh----hcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHH
Confidence 34566777666 4567888889999999988544443 333221 22357999995 7777877777654
Q ss_pred -cC-CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHH
Q 044798 473 -YP-SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLG 550 (1231)
Q Consensus 473 -~p-~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~ 550 (1231)
|+ .+++.-+..+.+ +......+...++|||+|+..+..+.
T Consensus 119 ~c~k~lr~~nl~s~~s--------------------------------------dsv~~~~L~d~pdIvV~TP~~ll~~~ 160 (569)
T KOG0346|consen 119 YCSKDLRAINLASSMS--------------------------------------DSVNSVALMDLPDIVVATPAKLLRHL 160 (569)
T ss_pred HHHHhhhhhhhhcccc--------------------------------------hHHHHHHHccCCCeEEeChHHHHHHH
Confidence 33 334333322111 11233445677899999999997765
Q ss_pred hh---hhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhcc
Q 044798 551 EK---LLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAV 627 (1231)
Q Consensus 551 ~~---L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~ 627 (1231)
.. .......++|+|||+-+...+ ....
T Consensus 161 ~~~~~~~~~~l~~LVvDEADLllsfG-------------------------------------------Yeed------- 190 (569)
T KOG0346|consen 161 AAGVLEYLDSLSFLVVDEADLLLSFG-------------------------------------------YEED------- 190 (569)
T ss_pred hhccchhhhheeeEEechhhhhhhcc-------------------------------------------cHHH-------
Confidence 43 223356799999998763222 1111
Q ss_pred ccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhc
Q 044798 628 PITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDG 707 (1231)
Q Consensus 628 pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~ 707 (1231)
|+. +...||+. |+.|+.+..+..
T Consensus 191 ------------------------lk~-------------l~~~LPr~----------------~Q~~LmSATl~d---- 213 (569)
T KOG0346|consen 191 ------------------------LKK-------------LRSHLPRI----------------YQCFLMSATLSD---- 213 (569)
T ss_pred ------------------------HHH-------------HHHhCCch----------------hhheeehhhhhh----
Confidence 111 11235532 444444332211
Q ss_pred CcchhHHHHHHHH-HhCChhhhhhhhhc-CCCC-----CCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHH
Q 044798 708 SRNSLYGIDVMRK-ICNHPDLLEREQSC-QIPD-----YGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILES 780 (1231)
Q Consensus 708 ~~~~l~~i~~LRk-icnHPdLl~~~~~~-~~~d-----~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~ 780 (1231)
.+..|.+ +|++|..+.-.... ..++ +.......|...+..+|+.-.=.| |+|||.+...+.-.|.-
T Consensus 214 ------Dv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~g-KsliFVNtIdr~YrLkL 286 (569)
T KOG0346|consen 214 ------DVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRG-KSLIFVNTIDRCYRLKL 286 (569)
T ss_pred ------HHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcC-ceEEEEechhhhHHHHH
Confidence 1334444 44556554322111 1111 112235678888888887644444 99999999999999999
Q ss_pred HHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecc--------------------------c---------cc
Q 044798 781 FLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTK--------------------------V---------GG 825 (1231)
Q Consensus 781 ~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTk--------------------------v---------Gg 825 (1231)
+|..-|++.+.+.|.++...|.-+|++||.+ -+.+ ||.|+ . .+
T Consensus 287 fLeqFGiksciLNseLP~NSR~Hii~QFNkG-~Ydi-vIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVs 364 (569)
T KOG0346|consen 287 FLEQFGIKSCILNSELPANSRCHIIEQFNKG-LYDI-VIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVS 364 (569)
T ss_pred HHHHhCcHhhhhcccccccchhhHHHHhhCc-ceeE-EEEccCccchhhhhccccccccccCCCCccccccccCchhchh
Confidence 9999999999999999999999999999998 4444 55565 1 25
Q ss_pred cccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEE
Q 044798 826 LGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYR 868 (1231)
Q Consensus 826 ~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYR 868 (1231)
+||+++.++.||+||.|-++..|+||+||+.|-|.+-.+..|-
T Consensus 365 RGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv 407 (569)
T KOG0346|consen 365 RGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFV 407 (569)
T ss_pred ccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEe
Confidence 7999999999999999999999999999999998877665543
No 95
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.63 E-value=3e-14 Score=181.30 Aligned_cols=108 Identities=16% Similarity=0.172 Sum_probs=92.7
Q ss_pred CCeEEEEeccHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEE
Q 044798 762 GHRVLLFAQTQQMLDILESFLIA---SGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVII 838 (1231)
Q Consensus 762 g~KVLVFSQ~~~~LdiLe~~L~~---~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi 838 (1231)
+..+|||+.....++.+...|.. .++.++.++|.++..+|..++..|.++. .-+|++|+++.+||++.++++||.
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~--rkVlvATnIAErsLtIp~V~~VID 289 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGR--RKVVLATNIAETSLTIEGIRLVVD 289 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCC--eEEEEecchHHhcccccCceEEEE
Confidence 56899999999999999999987 5789999999999999999999998764 566889999999999999999999
Q ss_pred cCCC----CCcc--------------hHHHHHHhHHhhCCcccEEEEEEEeCCC
Q 044798 839 FDPD----WNPS--------------TDVQARERAWRIGQKQDVTVYRLITRGT 874 (1231)
Q Consensus 839 ~Dp~----WNPs--------------~d~QAigRa~RiGQkk~V~VYRLit~gT 874 (1231)
++.+ |+|. .+.||.||++|. .+=++|||+++..
T Consensus 290 ~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~---~~G~cyrL~t~~~ 340 (812)
T PRK11664 290 SGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL---EPGICLHLYSKEQ 340 (812)
T ss_pred CCCcccccccccCCcceeEEEeechhhhhhhccccCCC---CCcEEEEecCHHH
Confidence 6644 3333 578999998886 4788999998653
No 96
>PRK14701 reverse gyrase; Provisional
Probab=99.63 E-value=3.3e-14 Score=190.03 Aligned_cols=335 Identities=16% Similarity=0.214 Sum_probs=190.4
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcC----C
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYP----S 475 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p----~ 475 (1231)
.++|.|..++..+ .++...++..+||+|||...+.+ .+........+|||+|. .|+.|....|..+.. +
T Consensus 79 ~pt~iQ~~~i~~i----l~G~d~li~APTGsGKTl~~~~~--al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~ 152 (1638)
T PRK14701 79 EFWSIQKTWAKRI----LRGKSFSIVAPTGMGKSTFGAFI--ALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLD 152 (1638)
T ss_pred CCCHHHHHHHHHH----HcCCCEEEEEcCCCCHHHHHHHH--HHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCc
Confidence 3789999999877 45778899999999999832222 22222233579999995 888999999998764 3
Q ss_pred CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhc
Q 044798 476 FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLD 555 (1231)
Q Consensus 476 lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~ 555 (1231)
.++..+++........ ..........++|+|+|++.+......+..
T Consensus 153 v~v~~~~g~~s~~e~~----------------------------------~~~~~l~~g~~dILV~TPgrL~~~~~~l~~ 198 (1638)
T PRK14701 153 VRLVYYHSNLRKKEKE----------------------------------EFLERIENGDFDILVTTAQFLARNFPEMKH 198 (1638)
T ss_pred eeEEEEeCCCCHHHHH----------------------------------HHHHHHhcCCCCEEEECCchhHHhHHHHhh
Confidence 4566666654321110 012222334579999999988776655555
Q ss_pred CCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCCC
Q 044798 556 VEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYA 635 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~ 635 (1231)
..++++|+||||.+...+- |+..+..++.| .+........-+..+...
T Consensus 199 ~~i~~iVVDEAD~ml~~~k------------------------nid~~L~llGF--------~~e~~~~~~~il~~~~~~ 246 (1638)
T PRK14701 199 LKFDFIFVDDVDAFLKASK------------------------NIDRSLQLLGF--------YEEIIEKAWKIIYLKKQG 246 (1638)
T ss_pred CCCCEEEEECceecccccc------------------------ccchhhhcCCC--------hHHHHHHHHHhhhccccc
Confidence 6799999999999953221 11111111111 000100000000000000
Q ss_pred CCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEE--EecCCHHHH--HHHHHHHhhHHHHHHhhcCcch
Q 044798 636 NASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVL--FCSLTEEQR--AVYRAFLASSEVEQILDGSRNS 711 (1231)
Q Consensus 636 ~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv--~~~Lt~~Qr--~lY~~~l~s~~~~~il~~~~~~ 711 (1231)
+ ....+..+..|...+ ..+|......+ ...+++... .+++.++. +.-+...
T Consensus 247 ~-----~~~~~~~~~~l~~~~-------------~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l~------f~v~~~~- 301 (1638)
T PRK14701 247 N-----IEDAMEKREILNKEI-------------EKIGNKIGCLIVASATGKAKGDRVKLYRELLG------FEVGSGR- 301 (1638)
T ss_pred c-----cchhhhhhhhhhhhh-------------hhcCCCccEEEEEecCCCchhHHHHHhhcCeE------EEecCCC-
Confidence 0 000011111222222 12344433333 334443211 11111100 0000000
Q ss_pred hHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHH---HHHHHHHHHHcCCc
Q 044798 712 LYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQM---LDILESFLIASGYE 788 (1231)
Q Consensus 712 l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~---LdiLe~~L~~~Gi~ 788 (1231)
..++.+. ..|.......| ..|.++|+.. |..+||||+++.. ++.|..+|...|++
T Consensus 302 ----~~lr~i~--------------~~yi~~~~~~k-~~L~~ll~~~---g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~ 359 (1638)
T PRK14701 302 ----SALRNIV--------------DVYLNPEKIIK-EHVRELLKKL---GKGGLIFVPIDEGAEKAEEIEKYLLEDGFK 359 (1638)
T ss_pred ----CCCCCcE--------------EEEEECCHHHH-HHHHHHHHhC---CCCeEEEEeccccchHHHHHHHHHHHCCCe
Confidence 0000000 00000111223 4566666543 6789999998764 58999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHHHhCCCCceEEEEec----cccccccCCCC-CCEEEEcCCCC---CcchHHHHH--------
Q 044798 789 YRRMDGLTPVKQRMALIDEYNNSSDVFIFILTT----KVGGLGTNLTG-ANRVIIFDPDW---NPSTDVQAR-------- 852 (1231)
Q Consensus 789 ~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlST----kvGg~GLNLt~-AnrVIi~Dp~W---NPs~d~QAi-------- 852 (1231)
+..+||. |...+++|.++ .+.|+ ++| +++++|||++. ..+||+||.|= +...+.|..
T Consensus 360 a~~~h~~-----R~~~l~~F~~G-~~~VL-VaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~ 432 (1638)
T PRK14701 360 IELVSAK-----NKKGFDLFEEG-EIDYL-IGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLS 432 (1638)
T ss_pred EEEecch-----HHHHHHHHHcC-CCCEE-EEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchH
Confidence 9999994 89999999998 56664 555 68999999998 99999999997 666666655
Q ss_pred -----HhHHhhCCc
Q 044798 853 -----ERAWRIGQK 861 (1231)
Q Consensus 853 -----gRa~RiGQk 861 (1231)
+|++|-|..
T Consensus 433 ~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 433 EILKIEEELKEGIP 446 (1638)
T ss_pred HHHHhhhhcccCCc
Confidence 777777754
No 97
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.63 E-value=3.1e-15 Score=156.20 Aligned_cols=164 Identities=18% Similarity=0.235 Sum_probs=111.9
Q ss_pred hchHHHHHHHHHHHHHHcC---CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCC
Q 044798 401 NLFDYQKVGVQWLWELHCQ---RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSF 476 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~---~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~l 476 (1231)
.|+|||.+++.-++..... ...++|..+||+|||+.++.++..+.. ++|||||. +++.||..+|..+.+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----~~l~~~p~~~l~~Q~~~~~~~~~~~~ 77 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----KVLIVAPNISLLEQWYDEFDDFGSEK 77 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----EEEEEESSHHHHHHHHHHHHHHSTTS
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----ceeEecCHHHHHHHHHHHHHHhhhhh
Confidence 6899999999988876655 478999999999999999988888764 99999996 89999999998888665
Q ss_pred eEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh----
Q 044798 477 HVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK---- 552 (1231)
Q Consensus 477 rV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~---- 552 (1231)
............... .. ........ ...........+++++|..+......
T Consensus 78 ~~~~~~~~~~~~~~~--------------------~~--~~~~~~~~---~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~ 132 (184)
T PF04851_consen 78 YNFFEKSIKPAYDSK--------------------EF--ISIQDDIS---DKSESDNNDKDIILTTYQSLQSDIKEEKKI 132 (184)
T ss_dssp EEEEE--GGGCCE-S--------------------EE--ETTTTEEE---HHHHHCBSS-SEEEEEHHHHHHHHHH----
T ss_pred hhhcccccccccccc--------------------cc--cccccccc---cccccccccccchhhHHHHHHhhccccccc
Confidence 554433211100000 00 00000011 11122345668999999999765432
Q ss_pred ---------hhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCc
Q 044798 553 ---------LLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPI 596 (1231)
Q Consensus 553 ---------L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPi 596 (1231)
+....+++||+||||++.+... ++.+..+...++|.|||||.
T Consensus 133 ~~~~~~~~~~~~~~~~~vI~DEaH~~~~~~~--~~~i~~~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 133 DESARRSYKLLKNKFDLVIIDEAHHYPSDSS--YREIIEFKAAFILGLTATPF 183 (184)
T ss_dssp -----GCHHGGGGSESEEEEETGGCTHHHHH--HHHHHHSSCCEEEEEESS-S
T ss_pred ccchhhhhhhccccCCEEEEehhhhcCCHHH--HHHHHcCCCCeEEEEEeCcc
Confidence 2344789999999999954442 55665588889999999995
No 98
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.62 E-value=1.8e-14 Score=181.46 Aligned_cols=308 Identities=18% Similarity=0.126 Sum_probs=192.3
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC-CcchHHHHHHHHHHc-CCCeE
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP-VTLLRQWKREAEKWY-PSFHV 478 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P-~sLl~QW~~E~~kw~-p~lrV 478 (1231)
.|+|+|.++|.-.+. .+.+.|++..||+|||+.|...|..-...+ .++++.||| ..|..+-.++|.+|- -+++|
T Consensus 31 el~~~qq~av~~~~~---~~~N~li~aPTgsGKTlIA~lai~~~l~~~-~~k~vYivPlkALa~Ek~~~~~~~~~~GirV 106 (766)
T COG1204 31 ELFNPQQEAVEKGLL---SDENVLISAPTGSGKTLIALLAILSTLLEG-GGKVVYIVPLKALAEEKYEEFSRLEELGIRV 106 (766)
T ss_pred HhhHHHHHHhhcccc---CCCcEEEEcCCCCchHHHHHHHHHHHHHhc-CCcEEEEeChHHHHHHHHHHhhhHHhcCCEE
Confidence 799999999965433 378999999999999998776665544332 579999999 588889999999543 36888
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhh--hcC
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKL--LDV 556 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L--~~~ 556 (1231)
.+++|...... .....++|+|+||+.+-...... .-.
T Consensus 107 ~~~TgD~~~~~-----------------------------------------~~l~~~~ViVtT~EK~Dsl~R~~~~~~~ 145 (766)
T COG1204 107 GISTGDYDLDD-----------------------------------------ERLARYDVIVTTPEKLDSLTRKRPSWIE 145 (766)
T ss_pred EEecCCcccch-----------------------------------------hhhccCCEEEEchHHhhHhhhcCcchhh
Confidence 88887543110 01245689999999985433221 223
Q ss_pred CccEEEEeCCcccCCc-ch-----HHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccc
Q 044798 557 EWGYAVLDEGHRIRNP-NA-----EISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIT 630 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~-~S-----k~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~ 630 (1231)
..++||+||+|.+..+ .. -++++...-...+.+.||+|- .|..|+- +||+-......-.| .|..
T Consensus 146 ~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATl--pN~~evA---~wL~a~~~~~~~rp-----~~l~ 215 (766)
T COG1204 146 EVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATL--PNAEEVA---DWLNAKLVESDWRP-----VPLR 215 (766)
T ss_pred cccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeec--CCHHHHH---HHhCCcccccCCCC-----cccc
Confidence 6789999999999776 22 122222221223446699994 2344433 33332211000000 0000
Q ss_pred cCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcc
Q 044798 631 VGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRN 710 (1231)
Q Consensus 631 ~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~ 710 (1231)
| ..|. ...+..+.-...
T Consensus 216 --------------------------------~-------~v~~-~~~~~~~~~~~k----------------------- 232 (766)
T COG1204 216 --------------------------------R-------GVPY-VGAFLGADGKKK----------------------- 232 (766)
T ss_pred --------------------------------c-------CCcc-ceEEEEecCccc-----------------------
Confidence 0 0000 011111110000
Q ss_pred hhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc-----
Q 044798 711 SLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS----- 785 (1231)
Q Consensus 711 ~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~----- 785 (1231)
.....+...+.+++....+.|..+|||+.++.........|...
T Consensus 233 -------------------------------~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~ 281 (766)
T COG1204 233 -------------------------------TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATL 281 (766)
T ss_pred -------------------------------cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcC
Confidence 00112334455556666677889999999887766655555420
Q ss_pred --------------------------------CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCC
Q 044798 786 --------------------------------GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGA 833 (1231)
Q Consensus 786 --------------------------------Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~A 833 (1231)
-..+..-|..++..+|+-+-+.|+.+ .++| |++|...+.|+||+ |
T Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g-~ikV-lv~TpTLA~GVNLP-A 358 (766)
T COG1204 282 SDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKG-KIKV-LVSTPTLAAGVNLP-A 358 (766)
T ss_pred ChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcC-CceE-EEechHHhhhcCCc-c
Confidence 01234466778899999999999998 5666 77889999999999 5
Q ss_pred CEEEEc-----C-----CCCCcchHHHHHHhHHhhCC
Q 044798 834 NRVIIF-----D-----PDWNPSTDVQARERAWRIGQ 860 (1231)
Q Consensus 834 nrVIi~-----D-----p~WNPs~d~QAigRa~RiGQ 860 (1231)
.+|||- | -+-++..+.|-.||++|.|=
T Consensus 359 ~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~ 395 (766)
T COG1204 359 RTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGY 395 (766)
T ss_pred eEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCc
Confidence 667764 4 23367788999999999984
No 99
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.61 E-value=4e-15 Score=175.39 Aligned_cols=120 Identities=21% Similarity=0.294 Sum_probs=106.2
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHH-HHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecc
Q 044798 744 RSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFL-IASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTK 822 (1231)
Q Consensus 744 ~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L-~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTk 822 (1231)
..+|+.++.+++..-.. -.+|||.|+..-...|-..| ...++.+..|+|..++.+|...+++|..+ .++| |++|+
T Consensus 371 e~~K~lA~rq~v~~g~~--PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g-~Iwv-LicTd 446 (593)
T KOG0344|consen 371 EKGKLLALRQLVASGFK--PPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIG-KIWV-LICTD 446 (593)
T ss_pred chhHHHHHHHHHhccCC--CCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhcc-CeeE-EEehh
Confidence 45788888888876543 48999999999998888888 67799999999999999999999999998 6777 77899
Q ss_pred ccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCccc-EEEE
Q 044798 823 VGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQD-VTVY 867 (1231)
Q Consensus 823 vGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~-V~VY 867 (1231)
+.++|+++.++|.||+||.|-.-..|++++||++|.|+.-. ++.|
T Consensus 447 ll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 447 LLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred hhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEe
Confidence 99999999999999999999999999999999999998855 4443
No 100
>COG4889 Predicted helicase [General function prediction only]
Probab=99.61 E-value=3.1e-14 Score=171.12 Aligned_cols=396 Identities=19% Similarity=0.172 Sum_probs=205.6
Q ss_pred cChhhhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHH
Q 044798 394 IPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKW 472 (1231)
Q Consensus 394 iP~~i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw 472 (1231)
+|..-..+|+|||.+++.-..+.+..+..|=|...+|.|||++++-+..++.. .++|+++|. +|+.|-.+|+..-
T Consensus 154 l~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~----~~iL~LvPSIsLLsQTlrew~~~ 229 (1518)
T COG4889 154 LPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAA----ARILFLVPSISLLSQTLREWTAQ 229 (1518)
T ss_pred cccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhh----hheEeecchHHHHHHHHHHHhhc
Confidence 34444567999999999999888877878888889999999999988777753 689999996 8888866665432
Q ss_pred c-CCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHh
Q 044798 473 Y-PSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGE 551 (1231)
Q Consensus 473 ~-p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~ 551 (1231)
. -+++...+....+.. + ... .-...+..+.. ......-......+....+--||.+||+.+-...+
T Consensus 230 ~~l~~~a~aVcSD~kvs-----r-----s~e-Dik~sdl~~p~--sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~e 296 (1518)
T COG4889 230 KELDFRASAVCSDDKVS-----R-----SAE-DIKASDLPIPV--STDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKE 296 (1518)
T ss_pred cCccceeEEEecCcccc-----c-----ccc-ccccccCCCCC--cccHHHHHHHHHHhhccCCcEEEEEcccchHHHHH
Confidence 2 133333333221110 0 000 00111111211 11111111111112223455799999999976554
Q ss_pred h--hhcCCccEEEEeCCcccCCc------chHHHH--HHHhcccccEEEecccCccC----------ChHHHHHhhhhhc
Q 044798 552 K--LLDVEWGYAVLDEGHRIRNP------NAEISL--VCKQLQTVHRIIMTGAPIQN----------KLSELWSLFDFVF 611 (1231)
Q Consensus 552 ~--L~~~~wd~VILDEAH~IKN~------~Sk~sk--alk~L~t~~RllLTGTPiqN----------nl~EL~SLl~FL~ 611 (1231)
. .-...||+|||||||+--.. .|..++ .-..+++..|+.|||||--- .-.+|+||=+-
T Consensus 297 AQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe-- 374 (1518)
T COG4889 297 AQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDE-- 374 (1518)
T ss_pred HHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchh--
Confidence 3 44457999999999987431 111111 11235677899999999311 11122222111
Q ss_pred CCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhh-cCCCceEEEEEecCCHHHHH
Q 044798 612 PGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNA-QLPKKTEHVLFCSLTEEQRA 690 (1231)
Q Consensus 612 P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~-dLP~K~e~vv~~~Lt~~Qr~ 690 (1231)
..|-..|.. -++. .-|.. -|....+.|+-+.---.+..
T Consensus 375 -------~~fGeef~r----l~Fg------------------------------eAv~rdlLTDYKVmvlaVd~~~i~~~ 413 (1518)
T COG4889 375 -------LTFGEEFHR----LGFG------------------------------EAVERDLLTDYKVMVLAVDKEVIAGV 413 (1518)
T ss_pred -------hhhchhhhc----ccHH------------------------------HHHHhhhhccceEEEEEechhhhhhh
Confidence 111111110 0000 00111 13344455544432111111
Q ss_pred HHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEec
Q 044798 691 VYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQ 770 (1231)
Q Consensus 691 lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ 770 (1231)
+...+.+..+.|..-+.-+-+-.|-.|..+.. ...+..+......-|+..+...+.++... + |=-+
T Consensus 414 ----------~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g-~~n~~~~~~~d~ap~~RAIaF~k~I~tSK-~--i~~s 479 (1518)
T COG4889 414 ----------LQSVLSGPSKGLALDDVSKIVGCWNGLAKRNG-EDNDLKNIKADTAPMQRAIAFAKDIKTSK-Q--IAES 479 (1518)
T ss_pred ----------hhhhccCcccccchhhhhhhhhhhhhhhhhcc-ccccccCCcCCchHHHHHHHHHHhhHHHH-H--HHHH
Confidence 11111222212211111111222223322221 11111122222333333333333322110 0 1112
Q ss_pred cHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhC-CCCceEEEEeccccccccCCCCCCEEEEcCCCCCc
Q 044798 771 TQQMLDILESFLIAS----GYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNP 845 (1231)
Q Consensus 771 ~~~~LdiLe~~L~~~----Gi~~~rIdGsts~~eRq~iId~Fn~-d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNP 845 (1231)
|....+..-..|... .+.+.-+||+|+..+|..+...-+. .++.+-+|-..+|.++|+++++-+.||||||--..
T Consensus 480 Fe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~sm 559 (1518)
T COG4889 480 FETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSM 559 (1518)
T ss_pred HHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCchhH
Confidence 222222222222222 3567779999999999666654443 34445668899999999999999999999999888
Q ss_pred chHHHHHHhHHhhCCccc
Q 044798 846 STDVQARERAWRIGQKQD 863 (1231)
Q Consensus 846 s~d~QAigRa~RiGQkk~ 863 (1231)
.+.+|++||+-|.-.-|.
T Consensus 560 VDIVQaVGRVMRKa~gK~ 577 (1518)
T COG4889 560 VDIVQAVGRVMRKAKGKK 577 (1518)
T ss_pred HHHHHHHHHHHHhCcCCc
Confidence 899999999999765554
No 101
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=3.1e-13 Score=169.34 Aligned_cols=122 Identities=17% Similarity=0.226 Sum_probs=109.5
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEec
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTT 821 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlST 821 (1231)
.....|..++.+.+..+...|..|||||.+....+.|..+|...|+++..|+|.....+|+.+...|+.+. ++|+|
T Consensus 424 ~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~----VtIAT 499 (896)
T PRK13104 424 LTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA----VTIAT 499 (896)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc----EEEec
Confidence 34567999999999999999999999999999999999999999999999999999999999999999983 57899
Q ss_pred cccccccCCC--------------------------------------CCCEEEEcCCCCCcchHHHHHHhHHhhCCccc
Q 044798 822 KVGGLGTNLT--------------------------------------GANRVIIFDPDWNPSTDVQARERAWRIGQKQD 863 (1231)
Q Consensus 822 kvGg~GLNLt--------------------------------------~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~ 863 (1231)
+++|+|+++. +-=+||.-+.+-|--.+.|.+||++|.|..-.
T Consensus 500 NmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGs 579 (896)
T PRK13104 500 NMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGS 579 (896)
T ss_pred cCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCc
Confidence 9999999975 23478888999999999999999999998776
Q ss_pred EEEE
Q 044798 864 VTVY 867 (1231)
Q Consensus 864 V~VY 867 (1231)
...|
T Consensus 580 s~f~ 583 (896)
T PRK13104 580 SRFY 583 (896)
T ss_pred eEEE
Confidence 5554
No 102
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=1.3e-13 Score=167.91 Aligned_cols=92 Identities=23% Similarity=0.290 Sum_probs=72.4
Q ss_pred HHHHHHHHHHc--CCcEEEEeCCCCHHHH--HHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCC--CC-c--
Q 044798 775 LDILESFLIAS--GYEYRRMDGLTPVKQR--MALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPD--WN-P-- 845 (1231)
Q Consensus 775 LdiLe~~L~~~--Gi~~~rIdGsts~~eR--q~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~--WN-P-- 845 (1231)
.+.++..|... +.++.++|++++..++ ..+++.|.++ .+.| |++|.+.+.|+|+..++.|+++|.+ .| |
T Consensus 271 te~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g-~~~I-LVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ 348 (505)
T TIGR00595 271 TEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANG-KADI-LIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDF 348 (505)
T ss_pred HHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcC-CCCE-EEeCcccccCCCCCcccEEEEEcCcccccCccc
Confidence 45666666665 7899999999877665 8999999987 4444 7889999999999999999877655 22 3
Q ss_pred -------chHHHHHHhHHhhCCcccEEEEE
Q 044798 846 -------STDVQARERAWRIGQKQDVTVYR 868 (1231)
Q Consensus 846 -------s~d~QAigRa~RiGQkk~V~VYR 868 (1231)
..+.|+.||++|.+....|.|..
T Consensus 349 ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 349 RAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred chHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 46899999999988766665543
No 103
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.58 E-value=3.9e-13 Score=167.65 Aligned_cols=120 Identities=19% Similarity=0.242 Sum_probs=105.8
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecc
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTK 822 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTk 822 (1231)
....|..+|.+.+......|..|||||.+....+.|...|...|+++..++|.+...++.-+...|..+. ++++|+
T Consensus 421 t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~----VtIATn 496 (796)
T PRK12906 421 TLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA----VTIATN 496 (796)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCce----EEEEec
Confidence 4567999999999888889999999999999999999999999999999999998777776666666652 578999
Q ss_pred ccccccCCC---CCC-----EEEEcCCCCCcchHHHHHHhHHhhCCcccEEE
Q 044798 823 VGGLGTNLT---GAN-----RVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866 (1231)
Q Consensus 823 vGg~GLNLt---~An-----rVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~V 866 (1231)
++|+|+++. ++. +||.++.|-|...|.|++||++|.|..-....
T Consensus 497 mAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~ 548 (796)
T PRK12906 497 MAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 548 (796)
T ss_pred cccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEE
Confidence 999999994 677 99999999999999999999999998766533
No 104
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.57 E-value=1.7e-13 Score=160.09 Aligned_cols=326 Identities=19% Similarity=0.223 Sum_probs=211.2
Q ss_pred CCcccChhhh--------hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhc-CCCCcEEEEeCC-
Q 044798 390 GGLKIPESIF--------NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS-NMYKPSIVVCPV- 459 (1231)
Q Consensus 390 ~~~~iP~~i~--------~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s-~~~kpvLIV~P~- 459 (1231)
+.+.+|+.+. ..|.|-|.-+|.-- ...+.+-++...+++|||+.+ =++.+... ...++.|.++|.
T Consensus 197 deLdipe~fk~~lk~~G~~eLlPVQ~laVe~G---LLeG~nllVVSaTasGKTLIg--ElAGi~~~l~~g~KmlfLvPLV 271 (830)
T COG1202 197 DELDIPEKFKRMLKREGIEELLPVQVLAVEAG---LLEGENLLVVSATASGKTLIG--ELAGIPRLLSGGKKMLFLVPLV 271 (830)
T ss_pred cccCCcHHHHHHHHhcCcceecchhhhhhhhc---cccCCceEEEeccCCCcchHH--HhhCcHHHHhCCCeEEEEehhH
Confidence 4466777763 45899999988542 135677888999999999863 33343322 235899999995
Q ss_pred cchHHHHHHHHHHcCC--CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCC
Q 044798 460 TLLRQWKREAEKWYPS--FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESG 537 (1231)
Q Consensus 460 sLl~QW~~E~~kw~p~--lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~ 537 (1231)
.|.+|=..+|.+-|.. +.+.+-.|.+.- +.+. . .+.-......+
T Consensus 272 ALANQKy~dF~~rYs~LglkvairVG~srI----k~~~---------~---------------------pv~~~t~~dAD 317 (830)
T COG1202 272 ALANQKYEDFKERYSKLGLKVAIRVGMSRI----KTRE---------E---------------------PVVVDTSPDAD 317 (830)
T ss_pred HhhcchHHHHHHHhhcccceEEEEechhhh----cccC---------C---------------------ccccCCCCCCc
Confidence 6667777889888754 444444443211 1000 0 00000113458
Q ss_pred EEEeCHHHHHHHHhh-hhcCCccEEEEeCCcccCCc--chHHHHH---HHhc-ccccEEEecccCccCChHHHHHhhhhh
Q 044798 538 LLITTYEQLRLLGEK-LLDVEWGYAVLDEGHRIRNP--NAEISLV---CKQL-QTVHRIIMTGAPIQNKLSELWSLFDFV 610 (1231)
Q Consensus 538 VvItTYe~Lr~~~~~-L~~~~wd~VILDEAH~IKN~--~Sk~ska---lk~L-~t~~RllLTGTPiqNnl~EL~SLl~FL 610 (1231)
|+|.||+.+--.... -...+...||+||.|.+... +...--. ++.+ .....|.||||- .|+.||-..+..=
T Consensus 318 IIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATV--gNp~elA~~l~a~ 395 (830)
T COG1202 318 IIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATV--GNPEELAKKLGAK 395 (830)
T ss_pred EEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeec--CChHHHHHHhCCe
Confidence 999999998543322 22236789999999999762 2222222 2222 234456688874 4555554433220
Q ss_pred cCCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCC-CceEEEEEecCCHHHH
Q 044798 611 FPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLP-KKTEHVLFCSLTEEQR 689 (1231)
Q Consensus 611 ~P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP-~K~e~vv~~~Lt~~Qr 689 (1231)
++ +...-| |...|++||.-...
T Consensus 396 -----------------lV--------------------------------------~y~~RPVplErHlvf~~~e~e-- 418 (830)
T COG1202 396 -----------------LV--------------------------------------LYDERPVPLERHLVFARNESE-- 418 (830)
T ss_pred -----------------eE--------------------------------------eecCCCCChhHeeeeecCchH--
Confidence 00 001111 33456677653322
Q ss_pred HHHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHH-HH---hc--CC
Q 044798 690 AVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKV-WK---DQ--GH 763 (1231)
Q Consensus 690 ~lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~-~~---~~--g~ 763 (1231)
|...+..|.+. |. +. ..
T Consensus 419 ---------------------------------------------------------K~~ii~~L~k~E~~~~sskg~rG 441 (830)
T COG1202 419 ---------------------------------------------------------KWDIIARLVKREFSTESSKGYRG 441 (830)
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHhhhhccCcCC
Confidence 22222222221 11 11 23
Q ss_pred eEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEE----c
Q 044798 764 RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVII----F 839 (1231)
Q Consensus 764 KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi----~ 839 (1231)
.+|||+.++.-...|..+|..+|++..-+|+.++..+|..+-..|.+. .+.+ ++||-+.|-|++++ |+.||| |
T Consensus 442 QtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q-~l~~-VVTTAAL~AGVDFP-ASQVIFEsLaM 518 (830)
T COG1202 442 QTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQ-ELAA-VVTTAALAAGVDFP-ASQVIFESLAM 518 (830)
T ss_pred ceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcC-Ccce-EeehhhhhcCCCCc-hHHHHHHHHHc
Confidence 799999999999999999999999999999999999999999999987 4444 67999999999999 566776 4
Q ss_pred CC-CCCcchHHHHHHhHHhhCCcccEEEEEEEeCC
Q 044798 840 DP-DWNPSTDVQARERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 840 Dp-~WNPs~d~QAigRa~RiGQkk~V~VYRLit~g 873 (1231)
-. |.+|..+.|-.||++|.+-...-.||-|+-.|
T Consensus 519 G~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 519 GIEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred ccccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 44 44999999999999999987767788787665
No 105
>PRK09694 helicase Cas3; Provisional
Probab=99.55 E-value=1e-12 Score=167.55 Aligned_cols=102 Identities=16% Similarity=0.086 Sum_probs=83.7
Q ss_pred HHHhcCCeEEEEeccHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHH----HHHHHHH-hCCCC-ceEEEEeccccccc
Q 044798 757 VWKDQGHRVLLFAQTQQMLDILESFLIASG---YEYRRMDGLTPVKQR----MALIDEY-NNSSD-VFIFILTTKVGGLG 827 (1231)
Q Consensus 757 ~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~G---i~~~rIdGsts~~eR----q~iId~F-n~d~~-i~VfLlSTkvGg~G 827 (1231)
.....|.++||||+++..+..+...|+..+ +++..+||.++..+| ..+++.| +++.. ...+|++|.+...|
T Consensus 555 ~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~G 634 (878)
T PRK09694 555 AAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQS 634 (878)
T ss_pred HHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhhe
Confidence 334568899999999999999999998765 689999999999999 4678899 44321 13568999999999
Q ss_pred cCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCc
Q 044798 828 TNLTGANRVIIFDPDWNPSTDVQARERAWRIGQK 861 (1231)
Q Consensus 828 LNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQk 861 (1231)
||+ .++.+|....| ...++||+||++|.|.+
T Consensus 635 LDI-d~DvlItdlaP--idsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 635 LDL-DFDWLITQLCP--VDLLFQRLGRLHRHHRK 665 (878)
T ss_pred eec-CCCeEEECCCC--HHHHHHHHhccCCCCCC
Confidence 999 47888876655 56899999999999875
No 106
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.55 E-value=4.5e-14 Score=147.38 Aligned_cols=156 Identities=25% Similarity=0.314 Sum_probs=113.3
Q ss_pred hhchHHHHHHHHHHHHHHcCC-CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC-CcchHHHHHHHHHHcCCC-
Q 044798 400 NNLFDYQKVGVQWLWELHCQR-AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP-VTLLRQWKREAEKWYPSF- 476 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~-~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P-~sLl~QW~~E~~kw~p~l- 476 (1231)
..++|||.+++.++.. . ..+++..++|+|||..++.++.........+++||+|| ..++.||..++..+++..
T Consensus 7 ~~~~~~Q~~~~~~~~~----~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 7 EPLRPYQKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred CCCCHHHHHHHHHHHc----CCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 4589999999998843 3 78999999999999988877777666555689999999 688899999999988653
Q ss_pred --eEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--
Q 044798 477 --HVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK-- 552 (1231)
Q Consensus 477 --rV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~-- 552 (1231)
...++++.... . ..........+|+++||+.+......
T Consensus 83 ~~~~~~~~~~~~~----------------------------------~----~~~~~~~~~~~v~~~t~~~l~~~~~~~~ 124 (201)
T smart00487 83 LKVVGLYGGDSKR----------------------------------E----QLRKLESGKTDILVTTPGRLLDLLENDL 124 (201)
T ss_pred eEEEEEeCCcchH----------------------------------H----HHHHHhcCCCCEEEeChHHHHHHHHcCC
Confidence 33333322110 0 11122223348999999999887765
Q ss_pred hhcCCccEEEEeCCcccCC--cchHHHHHHHhc-ccccEEEecccCcc
Q 044798 553 LLDVEWGYAVLDEGHRIRN--PNAEISLVCKQL-QTVHRIIMTGAPIQ 597 (1231)
Q Consensus 553 L~~~~wd~VILDEAH~IKN--~~Sk~skalk~L-~t~~RllLTGTPiq 597 (1231)
+....|+++|+||+|.+.+ ........+..+ ...+++++||||..
T Consensus 125 ~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~~~ 172 (201)
T smart00487 125 LELSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATPPE 172 (201)
T ss_pred cCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCCch
Confidence 4555788999999999985 333344444445 57788999999953
No 107
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=6.7e-14 Score=158.37 Aligned_cols=119 Identities=20% Similarity=0.337 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecccccc
Q 044798 747 KMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGL 826 (1231)
Q Consensus 747 Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~ 826 (1231)
|+..|..+.+ .-...+|||++..-++.|...|...|+.+..|+|.+.+.+|..++..|+.+. .+| |++|...++
T Consensus 252 k~~~l~dl~~----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gs-srv-lIttdl~ar 325 (397)
T KOG0327|consen 252 KLDTLCDLYR----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGS-SRV-LITTDLLAR 325 (397)
T ss_pred cccHHHHHHH----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCC-ceE-Eeecccccc
Confidence 7788888877 2347899999999999999999999999999999999999999999999984 445 789999999
Q ss_pred ccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCC
Q 044798 827 GTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 827 GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~g 873 (1231)
|++++.++-||+||.|-|...|++++||++|.|-+- .+..++++.
T Consensus 326 gidv~~~slvinydlP~~~~~yihR~gr~gr~grkg--~~in~v~~~ 370 (397)
T KOG0327|consen 326 GIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKG--VAINFVTEE 370 (397)
T ss_pred ccchhhcceeeeeccccchhhhhhhcccccccCCCc--eeeeeehHh
Confidence 999999999999999999999999999999999643 233455544
No 108
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.53 E-value=2.5e-12 Score=161.07 Aligned_cols=121 Identities=22% Similarity=0.261 Sum_probs=106.9
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecc
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTK 822 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTk 822 (1231)
....|..+|.+.+..+...|..|||||.+....+.|...|...|+++..|+|. +.+|+..|..|..++ .-++|+|+
T Consensus 411 t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~~--g~VtIATN 486 (830)
T PRK12904 411 TEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGRP--GAVTIATN 486 (830)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCCC--ceEEEecc
Confidence 45679999999999888899999999999999999999999999999999996 679999999999875 55688999
Q ss_pred ccccccCCC-C-------------------------------------CCEEEEcCCCCCcchHHHHHHhHHhhCCcccE
Q 044798 823 VGGLGTNLT-G-------------------------------------ANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864 (1231)
Q Consensus 823 vGg~GLNLt-~-------------------------------------AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V 864 (1231)
++|+|+|+. + -=+||.-..+-|--.+.|.+||++|.|..-..
T Consensus 487 mAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss 566 (830)
T PRK12904 487 MAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSS 566 (830)
T ss_pred cccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCce
Confidence 999999975 2 45788888899999999999999999988766
Q ss_pred EEE
Q 044798 865 TVY 867 (1231)
Q Consensus 865 ~VY 867 (1231)
..|
T Consensus 567 ~f~ 569 (830)
T PRK12904 567 RFY 569 (830)
T ss_pred eEE
Confidence 554
No 109
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.53 E-value=3.8e-12 Score=159.00 Aligned_cols=126 Identities=17% Similarity=0.163 Sum_probs=110.0
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccc
Q 044798 744 RSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKV 823 (1231)
Q Consensus 744 ~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkv 823 (1231)
..+++..|.+.|..|...|.++||||.++.+++.|..+|...|+++..+||.++..+|..++..|..+. + .+|++|.+
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~-i-~VLV~t~~ 501 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGE-F-DVLVGINL 501 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCC-c-eEEEEcCh
Confidence 467888999999999999999999999999999999999999999999999999999999999999874 4 45788999
Q ss_pred cccccCCCCCCEEEEcC-----CCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCC
Q 044798 824 GGLGTNLTGANRVIIFD-----PDWNPSTDVQARERAWRIGQKQDVTVYRLITRGT 874 (1231)
Q Consensus 824 Gg~GLNLt~AnrVIi~D-----p~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gT 874 (1231)
.++|++++.++.||++| .+-+...++|++||++|.. .-.++.|+...|
T Consensus 502 L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~---~G~vi~~~~~~~ 554 (655)
T TIGR00631 502 LREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNV---NGKVIMYADKIT 554 (655)
T ss_pred hcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCC---CCEEEEEEcCCC
Confidence 99999999999999999 4568889999999999973 233455555444
No 110
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.53 E-value=8.3e-13 Score=171.49 Aligned_cols=108 Identities=15% Similarity=0.137 Sum_probs=88.4
Q ss_pred cCCeEEEEeccHHHHHHHHHHHHHcCCc---EEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEE
Q 044798 761 QGHRVLLFAQTQQMLDILESFLIASGYE---YRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVI 837 (1231)
Q Consensus 761 ~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~---~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVI 837 (1231)
....+|||+.....++.+...|...+++ ++.++|.++..+|..+++.+ + . +-+|++|++++.||++.++++||
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~--g-~-rkIIVATNIAEtSITIpgI~yVI 360 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH--S-G-RRIVLATNVAETSLTVPGIKYVI 360 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc--C-C-eeEEEeccHHhhccccCcceEEE
Confidence 3468999999999999999999988765 67899999999999887653 2 2 45688999999999999999999
Q ss_pred EcC---------------CCCCc---chHHHHHHhHHhhCCcccEEEEEEEeCCCH
Q 044798 838 IFD---------------PDWNP---STDVQARERAWRIGQKQDVTVYRLITRGTI 875 (1231)
Q Consensus 838 i~D---------------p~WNP---s~d~QAigRa~RiGQkk~V~VYRLit~gTI 875 (1231)
.++ .+-.| +.+.||.||++|. .+=.+|+|+++...
T Consensus 361 D~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~---~~G~c~rLyte~d~ 413 (1294)
T PRK11131 361 DPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV---SEGICIRLYSEDDF 413 (1294)
T ss_pred ECCCccccccccccCcccCCeeecCHhhHhhhccccCCC---CCcEEEEeCCHHHH
Confidence 974 23333 5788999999987 46778899986543
No 111
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.50 E-value=2.5e-14 Score=130.54 Aligned_cols=78 Identities=31% Similarity=0.580 Sum_probs=73.3
Q ss_pred HHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhC
Q 044798 780 SFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIG 859 (1231)
Q Consensus 780 ~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiG 859 (1231)
.+|+..|+++..++|.++..+|+.+++.|+.+. . .+|++|.++++|+|++.+++||+|+++||+..+.|++||++|.|
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~-~-~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGE-I-RVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTS-S-SEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccC-c-eEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 468899999999999999999999999999985 3 56788999999999999999999999999999999999999987
No 112
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.50 E-value=5.6e-12 Score=157.74 Aligned_cols=122 Identities=16% Similarity=0.245 Sum_probs=109.3
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEec
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTT 821 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlST 821 (1231)
.....|..++.+-+..+.+.|..|||||.+....+.|..+|...|+++..+++..+..+|..+...|+.+. ++|+|
T Consensus 429 ~t~~~K~~Aii~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~----VtIAT 504 (908)
T PRK13107 429 LTADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA----VTIAT 504 (908)
T ss_pred eCHHHHHHHHHHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc----EEEec
Confidence 34578999999999999999999999999999999999999999999999999999999999999999884 57899
Q ss_pred cccccccCCC-------------------------------------CCCEEEEcCCCCCcchHHHHHHhHHhhCCcccE
Q 044798 822 KVGGLGTNLT-------------------------------------GANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864 (1231)
Q Consensus 822 kvGg~GLNLt-------------------------------------~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V 864 (1231)
+++|+|+++. +-=+||.-..+-|--.+.|.+||++|.|..-..
T Consensus 505 nmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss 584 (908)
T PRK13107 505 NMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSS 584 (908)
T ss_pred CCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCce
Confidence 9999999975 334799999999999999999999999987654
Q ss_pred EEE
Q 044798 865 TVY 867 (1231)
Q Consensus 865 ~VY 867 (1231)
..|
T Consensus 585 ~f~ 587 (908)
T PRK13107 585 RFY 587 (908)
T ss_pred eEE
Confidence 444
No 113
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.49 E-value=2.7e-13 Score=133.29 Aligned_cols=136 Identities=19% Similarity=0.216 Sum_probs=99.6
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcch-HHHHHHHHHHcC-CCeEEEEecccchhhhhhhhccCCC
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLL-RQWKREAEKWYP-SFHVELLHDSAQDLGFRKKRAKSSD 499 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl-~QW~~E~~kw~p-~lrV~il~gs~~~~~~~~kr~~~~~ 499 (1231)
++++.+++|+|||.+++.++..+...+..+++||+||...+ .||...+..|.. ...+.++++......
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 71 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQ---------- 71 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhH----------
Confidence 68999999999999999999888776677899999997554 555666777765 466666665432110
Q ss_pred CCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhh--hcCCccEEEEeCCcccCCcchHHH
Q 044798 500 TDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKL--LDVEWGYAVLDEGHRIRNPNAEIS 577 (1231)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L--~~~~wd~VILDEAH~IKN~~Sk~s 577 (1231)
.........+|+++||+.+....... ....|++||+||+|.+.+......
T Consensus 72 ----------------------------~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~ 123 (144)
T cd00046 72 ----------------------------QEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLL 123 (144)
T ss_pred ----------------------------HHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHH
Confidence 00112345689999999887655432 345799999999999988776554
Q ss_pred ---HHHHhcccccEEEecccC
Q 044798 578 ---LVCKQLQTVHRIIMTGAP 595 (1231)
Q Consensus 578 ---kalk~L~t~~RllLTGTP 595 (1231)
.........++++|||||
T Consensus 124 ~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 124 GLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHHHhhCCccceEEEEeccC
Confidence 344445778889999998
No 114
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.48 E-value=4.1e-12 Score=161.04 Aligned_cols=311 Identities=18% Similarity=0.183 Sum_probs=206.2
Q ss_pred chHHHHHHHHHHHHHHcCCC--cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHH-HHHHHHHHcCCCeE
Q 044798 402 LFDYQKVGVQWLWELHCQRA--GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQ-WKREAEKWYPSFHV 478 (1231)
Q Consensus 402 L~pyQkegV~wL~el~~~~~--GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~Q-W~~E~~kw~p~lrV 478 (1231)
-.|-|..+|.-..+=.+++. .=+||-++|-|||=.|+=.+-... ...+.+-|+||++++.| -.+.|..-+-++.|
T Consensus 595 ET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV--~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV 672 (1139)
T COG1197 595 ETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV--MDGKQVAVLVPTTLLAQQHYETFKERFAGFPV 672 (1139)
T ss_pred CCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh--cCCCeEEEEcccHHhHHHHHHHHHHHhcCCCe
Confidence 35779999988876555443 558899999999987662221111 23488999999988764 55667776666555
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcCCc
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEW 558 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~~w 558 (1231)
.|-.-+. ....+.....+........+|||.|+..|..... -.+.
T Consensus 673 ~I~~LSR--------------------------------F~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~---FkdL 717 (1139)
T COG1197 673 RIEVLSR--------------------------------FRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVK---FKDL 717 (1139)
T ss_pred eEEEecc--------------------------------cCCHHHHHHHHHHHhcCCccEEEechHhhCCCcE---EecC
Confidence 4433211 1122223335666677888999999998865443 2356
Q ss_pred cEEEEeCCcccCCcchHHHHHHHhcccc-cEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCCCCC
Q 044798 559 GYAVLDEGHRIRNPNAEISLVCKQLQTV-HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANA 637 (1231)
Q Consensus 559 d~VILDEAH~IKN~~Sk~skalk~L~t~-~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~~a 637 (1231)
+++|+||=|++ +-+.-..+++|++. +.|-||||||+-.|.= || .|..+.
T Consensus 718 GLlIIDEEqRF---GVk~KEkLK~Lr~~VDvLTLSATPIPRTL~M--sm-------------------------~GiRdl 767 (1139)
T COG1197 718 GLLIIDEEQRF---GVKHKEKLKELRANVDVLTLSATPIPRTLNM--SL-------------------------SGIRDL 767 (1139)
T ss_pred CeEEEechhhc---CccHHHHHHHHhccCcEEEeeCCCCcchHHH--HH-------------------------hcchhh
Confidence 79999999998 34455678888664 6777999999865431 00 000000
Q ss_pred ChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchhHHHHH
Q 044798 638 SPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDV 717 (1231)
Q Consensus 638 s~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~i~~ 717 (1231)
+ + -.-||.....|..-..+..-.+.+
T Consensus 768 ----------------------------S-v-I~TPP~~R~pV~T~V~~~d~~~ir------------------------ 793 (1139)
T COG1197 768 ----------------------------S-V-IATPPEDRLPVKTFVSEYDDLLIR------------------------ 793 (1139)
T ss_pred ----------------------------h-h-ccCCCCCCcceEEEEecCChHHHH------------------------
Confidence 0 0 123554443332222221100000
Q ss_pred HHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc--CCcEEEEeCC
Q 044798 718 MRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS--GYEYRRMDGL 795 (1231)
Q Consensus 718 LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~--Gi~~~rIdGs 795 (1231)
..|++++ ..|..|-.-.+....+.-+...|+.. ..++...||.
T Consensus 794 ----------------------------------eAI~REl-~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQ 838 (1139)
T COG1197 794 ----------------------------------EAILREL-LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQ 838 (1139)
T ss_pred ----------------------------------HHHHHHH-hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecC
Confidence 1122222 23557777788888888888888776 5578899999
Q ss_pred CCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCC-CCcchHHHHHHhHHhhCCcccEEEEEEEeC
Q 044798 796 TPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPD-WNPSTDVQARERAWRIGQKQDVTVYRLITR 872 (1231)
Q Consensus 796 ts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~-WNPs~d~QAigRa~RiGQkk~V~VYRLit~ 872 (1231)
|+..+-+.++..|.++ .+.| |+||-....|||++.||++|+-+.+ +--+..-|-+||++|-. +.-|.|.|+..
T Consensus 839 M~e~eLE~vM~~F~~g-~~dV-Lv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~--~~AYAYfl~p~ 912 (1139)
T COG1197 839 MRERELEEVMLDFYNG-EYDV-LVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN--KQAYAYFLYPP 912 (1139)
T ss_pred CCHHHHHHHHHHHHcC-CCCE-EEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc--ceEEEEEeecC
Confidence 9999999999999998 5666 5566688999999999999998775 67788899999999953 45677777654
No 115
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.47 E-value=3e-11 Score=151.72 Aligned_cols=125 Identities=17% Similarity=0.180 Sum_probs=109.2
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccc
Q 044798 744 RSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKV 823 (1231)
Q Consensus 744 ~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkv 823 (1231)
..+++..|.+.|..|...|.++||||.+...++.|..+|...|+++..+||.++..+|..++..|..+. + .+|++|.+
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~-i-~vlV~t~~ 505 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE-F-DVLVGINL 505 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCC-c-eEEEEeCH
Confidence 456788899999999999999999999999999999999999999999999999999999999999874 4 45788999
Q ss_pred cccccCCCCCCEEEEcCC-----CCCcchHHHHHHhHHhhCCcccEEEEEEEeCC
Q 044798 824 GGLGTNLTGANRVIIFDP-----DWNPSTDVQARERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 824 Gg~GLNLt~AnrVIi~Dp-----~WNPs~d~QAigRa~RiGQkk~V~VYRLit~g 873 (1231)
.++|++++.++.||++|. +-++..|+|++||++|. . .-.++.|+...
T Consensus 506 L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~--~G~~i~~~~~~ 557 (652)
T PRK05298 506 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-V--NGKVILYADKI 557 (652)
T ss_pred HhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-C--CCEEEEEecCC
Confidence 999999999999999996 45889999999999994 2 33455556543
No 116
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.41 E-value=7e-12 Score=163.54 Aligned_cols=109 Identities=16% Similarity=0.164 Sum_probs=88.9
Q ss_pred cCCeEEEEeccHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEE
Q 044798 761 QGHRVLLFAQTQQMLDILESFLIASG---YEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVI 837 (1231)
Q Consensus 761 ~g~KVLVFSQ~~~~LdiLe~~L~~~G---i~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVI 837 (1231)
....+|||+.....++.+...|...+ +.++.++|.++..+|+.++..+ +. +-+|++|+++..||++.++.+||
T Consensus 278 ~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~-rkIVLATNIAEtSLTIpgV~yVI 353 (1283)
T TIGR01967 278 GPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SG-RRIVLATNVAETSLTVPGIHYVI 353 (1283)
T ss_pred CCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CC-ceEEEeccHHHhccccCCeeEEE
Confidence 34689999999999999999998875 4588899999999999885443 22 45688999999999999999999
Q ss_pred EcCCC----C--------------CcchHHHHHHhHHhhCCcccEEEEEEEeCCCHH
Q 044798 838 IFDPD----W--------------NPSTDVQARERAWRIGQKQDVTVYRLITRGTIE 876 (1231)
Q Consensus 838 i~Dp~----W--------------NPs~d~QAigRa~RiGQkk~V~VYRLit~gTIE 876 (1231)
.++.. | +.+.+.||.||++|.| +=.+|||+++...+
T Consensus 354 DsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~---~G~cyRLyte~~~~ 407 (1283)
T TIGR01967 354 DTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVA---PGICIRLYSEEDFN 407 (1283)
T ss_pred eCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCC---CceEEEecCHHHHH
Confidence 87632 2 3357899999999987 77789999866443
No 117
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.38 E-value=9.4e-11 Score=147.45 Aligned_cols=117 Identities=21% Similarity=0.237 Sum_probs=104.1
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccc
Q 044798 744 RSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKV 823 (1231)
Q Consensus 744 ~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkv 823 (1231)
...|+.+|.+.+......|..|||||.++...+.|..+|...|+++..|++ .+.+|+..|..|...+ ..++|+|++
T Consensus 580 ~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~--g~VtIATNM 655 (1025)
T PRK12900 580 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQK--GAVTIATNM 655 (1025)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCC--CeEEEeccC
Confidence 357999999999988888999999999999999999999999999999997 5789999999999864 556889999
Q ss_pred cccccCCC---CCC-----EEEEcCCCCCcchHHHHHHhHHhhCCcccE
Q 044798 824 GGLGTNLT---GAN-----RVIIFDPDWNPSTDVQARERAWRIGQKQDV 864 (1231)
Q Consensus 824 Gg~GLNLt---~An-----rVIi~Dp~WNPs~d~QAigRa~RiGQkk~V 864 (1231)
+|+|+++. ++. +||.++.+-+...|.|++||++|.|..-..
T Consensus 656 AGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS 704 (1025)
T PRK12900 656 AGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGES 704 (1025)
T ss_pred cCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcce
Confidence 99999998 333 348899999999999999999999987654
No 118
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.37 E-value=1.2e-12 Score=118.64 Aligned_cols=81 Identities=30% Similarity=0.525 Sum_probs=75.5
Q ss_pred HHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHH
Q 044798 777 ILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAW 856 (1231)
Q Consensus 777 iLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~ 856 (1231)
.|...|...++.+..++|.++..+|..+++.|+.+. ..+|++|.++++|+|++.++.||+++++||+..+.|++||++
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~--~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~ 79 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGK--IKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAG 79 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCC--CeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhcccc
Confidence 467788888999999999999999999999999875 377889999999999999999999999999999999999999
Q ss_pred hhC
Q 044798 857 RIG 859 (1231)
Q Consensus 857 RiG 859 (1231)
|.|
T Consensus 80 R~g 82 (82)
T smart00490 80 RAG 82 (82)
T ss_pred cCC
Confidence 987
No 119
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.36 E-value=9.6e-10 Score=123.18 Aligned_cols=297 Identities=16% Similarity=0.219 Sum_probs=197.9
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeE
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHV 478 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV 478 (1231)
.+|-|+|+.+.+-+.....+....|+-.-+|.|||-++...+......| +.+.|..|. -++-.-...+..-+++..+
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G--~~vciASPRvDVclEl~~Rlk~aF~~~~I 173 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQG--GRVCIASPRVDVCLELYPRLKQAFSNCDI 173 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcC--CeEEEecCcccchHHHHHHHHHhhccCCe
Confidence 4699999999999988888899999999999999987766666655444 789999994 5666666777777888889
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEE-eCHHHHHHHHhhhhcCC
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLI-TTYEQLRLLGEKLLDVE 557 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvI-tTYe~Lr~~~~~L~~~~ 557 (1231)
.++|+.+... ++ ..+|| ||++.++- .+ .
T Consensus 174 ~~Lyg~S~~~-------------------------------------------fr--~plvVaTtHQLlrF-k~-----a 202 (441)
T COG4098 174 DLLYGDSDSY-------------------------------------------FR--APLVVATTHQLLRF-KQ-----A 202 (441)
T ss_pred eeEecCCchh-------------------------------------------cc--ccEEEEehHHHHHH-Hh-----h
Confidence 9988765421 11 23455 55555543 32 5
Q ss_pred ccEEEEeCCcccCC-cchHHHHHHHhc--ccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCC
Q 044798 558 WGYAVLDEGHRIRN-PNAEISLVCKQL--QTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGY 634 (1231)
Q Consensus 558 wd~VILDEAH~IKN-~~Sk~skalk~L--~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~ 634 (1231)
||++|+||.+.+-- .+-....+++.- .....|.|||||-..=..++ ..|..
T Consensus 203 FD~liIDEVDAFP~~~d~~L~~Av~~ark~~g~~IylTATp~k~l~r~~--------------------------~~g~~ 256 (441)
T COG4098 203 FDLLIIDEVDAFPFSDDQSLQYAVKKARKKEGATIYLTATPTKKLERKI--------------------------LKGNL 256 (441)
T ss_pred ccEEEEeccccccccCCHHHHHHHHHhhcccCceEEEecCChHHHHHHh--------------------------hhCCe
Confidence 89999999998732 222344455544 33467999999942111110 00000
Q ss_pred CCCChhhHhHHHHHHHHHHHHHhH-HHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchhH
Q 044798 635 ANASPLQVSTAYRCAVVLRDLIMP-YLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLY 713 (1231)
Q Consensus 635 ~~as~~~v~~~~k~~~~Lr~lI~p-~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~ 713 (1231)
.+ .+-+|.. ...||-. -||...++-+.+-+
T Consensus 257 ----------------------~~~klp~RfH---~~pLpvP----kf~w~~~~~k~l~r-------------------- 287 (441)
T COG4098 257 ----------------------RILKLPARFH---GKPLPVP----KFVWIGNWNKKLQR-------------------- 287 (441)
T ss_pred ----------------------eEeecchhhc---CCCCCCC----ceEEeccHHHHhhh--------------------
Confidence 00 0000110 0112221 12222222111111
Q ss_pred HHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHH-HHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcE---
Q 044798 714 GIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMK-VVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEY--- 789 (1231)
Q Consensus 714 ~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~-~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~--- 789 (1231)
.|+. .|...|+.....|.-+|||.....++.-+...|+.. +++
T Consensus 288 --------------------------------~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~-~~~~~i 334 (441)
T COG4098 288 --------------------------------NKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKK-LPKETI 334 (441)
T ss_pred --------------------------------ccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhh-CCccce
Confidence 1111 467788888888999999999999999999999654 333
Q ss_pred EEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCC--CCcchHHHHHHhHHhhCCc
Q 044798 790 RRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPD--WNPSTDVQARERAWRIGQK 861 (1231)
Q Consensus 790 ~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~--WNPs~d~QAigRa~RiGQk 861 (1231)
..++... ..|.+.|..|+++. .-+|++|....+|++++..+.+|+=.-. ++-+..+|--||++|---.
T Consensus 335 ~~Vhs~d--~~R~EkV~~fR~G~--~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~ 404 (441)
T COG4098 335 ASVHSED--QHRKEKVEAFRDGK--ITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLER 404 (441)
T ss_pred eeeeccC--ccHHHHHHHHHcCc--eEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcC
Confidence 4444444 57999999999985 5668899999999999999988885444 8899999999999996543
No 120
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.33 E-value=3.5e-12 Score=145.22 Aligned_cols=315 Identities=17% Similarity=0.187 Sum_probs=204.4
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhc--CCCCcEEEEeCC-cchHHHHHHHHHHc--C
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS--NMYKPSIVVCPV-TLLRQWKREAEKWY--P 474 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s--~~~kpvLIV~P~-sLl~QW~~E~~kw~--p 474 (1231)
....|.|...+.-+ ..+...+--.-+|+|||..-+..+..-..+ ...-+.||+.|. .|..|-.+-++... .
T Consensus 42 ~~ptpiqRKTipli----Le~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt 117 (529)
T KOG0337|consen 42 NTPTPIQRKTIPLI----LEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT 117 (529)
T ss_pred CCCCchhcccccce----eeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc
Confidence 34567788777655 345555556779999998755444332222 223589999995 55556444444332 2
Q ss_pred CCeEE-EEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh-
Q 044798 475 SFHVE-LLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK- 552 (1231)
Q Consensus 475 ~lrV~-il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~- 552 (1231)
.++.. ++++..... +| ..+...++|||.|++.+......
T Consensus 118 ~lr~s~~~ggD~~ee----------------------------------qf-----~~l~~npDii~ATpgr~~h~~vem 158 (529)
T KOG0337|consen 118 KLRQSLLVGGDSIEE----------------------------------QF-----ILLNENPDIIIATPGRLLHLGVEM 158 (529)
T ss_pred chhhhhhcccchHHH----------------------------------HH-----HHhccCCCEEEecCceeeeeehhe
Confidence 45544 333322111 11 11334579999999988543322
Q ss_pred -hhcCCccEEEEeCCcccCCc--chHHHHHHHhcccc-cEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccc
Q 044798 553 -LLDVEWGYAVLDEGHRIRNP--NAEISLVCKQLQTV-HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP 628 (1231)
Q Consensus 553 -L~~~~wd~VILDEAH~IKN~--~Sk~skalk~L~t~-~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~p 628 (1231)
|......|||+||+.+|-.. .-+....+..+... -.+++|||--. .|++|...|
T Consensus 159 ~l~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~~QTllfSatlp~-------~lv~fakaG--------------- 216 (529)
T KOG0337|consen 159 TLTLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPESRQTLLFSATLPR-------DLVDFAKAG--------------- 216 (529)
T ss_pred eccccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCcceEEEEeccCch-------hhHHHHHcc---------------
Confidence 44456789999999999654 34556666666443 44677777411 122221111
Q ss_pred cccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEE-EEEecCCHHHHHHHHHHHhhHHHHHHhhc
Q 044798 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEH-VLFCSLTEEQRAVYRAFLASSEVEQILDG 707 (1231)
Q Consensus 629 I~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~-vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~ 707 (1231)
-.||..+. -+--++++.
T Consensus 217 ------------------------------------------l~~p~lVRldvetkise~-------------------- 234 (529)
T KOG0337|consen 217 ------------------------------------------LVPPVLVRLDVETKISEL-------------------- 234 (529)
T ss_pred ------------------------------------------CCCCceEEeehhhhcchh--------------------
Confidence 01121111 000011110
Q ss_pred CcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCC
Q 044798 708 SRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGY 787 (1231)
Q Consensus 708 ~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi 787 (1231)
..++ +.......|..+|+.++..... .+.++||+......+++...|...|+
T Consensus 235 --------lk~~-------------------f~~~~~a~K~aaLl~il~~~~~-~~~t~vf~~tk~hve~~~~ll~~~g~ 286 (529)
T KOG0337|consen 235 --------LKVR-------------------FFRVRKAEKEAALLSILGGRIK-DKQTIVFVATKHHVEYVRGLLRDFGG 286 (529)
T ss_pred --------hhhh-------------------eeeeccHHHHHHHHHHHhcccc-ccceeEEecccchHHHHHHHHHhcCC
Confidence 0000 1111234577777777776543 45899999999999999999999999
Q ss_pred cEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEE
Q 044798 788 EYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVY 867 (1231)
Q Consensus 788 ~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VY 867 (1231)
.+..+.|++.+..|..-+.+|+... .-+|+.|+++++|++++.-+.||+||.|-.+..+.+|+||+.|.|.+ -..|
T Consensus 287 ~~s~iysslD~~aRk~~~~~F~~~k--~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrt--g~aY 362 (529)
T KOG0337|consen 287 EGSDIYSSLDQEARKINGRDFRGRK--TSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT--GRAY 362 (529)
T ss_pred CccccccccChHhhhhccccccCCc--cceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhcccc--ceEE
Confidence 9999999999999999999999875 56788999999999999999999999999999999999999999955 3456
Q ss_pred EEEeCC
Q 044798 868 RLITRG 873 (1231)
Q Consensus 868 RLit~g 873 (1231)
-|++..
T Consensus 363 s~V~~~ 368 (529)
T KOG0337|consen 363 SLVAST 368 (529)
T ss_pred EEEecc
Confidence 677654
No 121
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=6.7e-10 Score=139.67 Aligned_cols=121 Identities=17% Similarity=0.245 Sum_probs=97.5
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecc
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTK 822 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTk 822 (1231)
....|..++.+-+..+...|..|||-|.+...-+.|...|...|+++..++...... -..+|..= + ....+-++|.
T Consensus 549 t~~~k~~ai~~ei~~~~~~grPvLigt~si~~se~ls~~L~~~gi~h~vLNak~~~~-Ea~iia~A--G-~~g~VTIATN 624 (970)
T PRK12899 549 TEREKYHAIVAEIASIHRKGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQ-EAEIIAGA--G-KLGAVTVATN 624 (970)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCcceecccchhhh-HHHHHHhc--C-CCCcEEEeec
Confidence 446888999988888889999999999999999999999999999999998874322 22444432 2 2234567899
Q ss_pred ccccccCCC--------CCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEE
Q 044798 823 VGGLGTNLT--------GANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVY 867 (1231)
Q Consensus 823 vGg~GLNLt--------~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VY 867 (1231)
.+|+|.++. +-=+||.-..+-|...+.|.+||++|.|..-....|
T Consensus 625 mAGRGTDIkl~~~v~~~GGLhVIgTer~es~Rid~Ql~GRagRQGdpGss~f~ 677 (970)
T PRK12899 625 MAGRGTDIKLDEEAVAVGGLYVIGTSRHQSRRIDRQLRGRCARLGDPGAAKFF 677 (970)
T ss_pred cccCCcccccCchHHhcCCcEEEeeccCchHHHHHHHhcccccCCCCCceeEE
Confidence 999998874 345899999999999999999999999987665444
No 122
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.28 E-value=1.5e-10 Score=147.28 Aligned_cols=129 Identities=19% Similarity=0.157 Sum_probs=103.0
Q ss_pred HhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhC--CCCceEEEEeccccccccCCCCCCEE
Q 044798 759 KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN--SSDVFIFILTTKVGGLGTNLTGANRV 836 (1231)
Q Consensus 759 ~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~--d~~i~VfLlSTkvGg~GLNLt~AnrV 836 (1231)
...|.|++|-++++..+..+...|+..+.+++.+|+.+....|.+.++.... ..+-..++|+|.|.-.|||+. .+.+
T Consensus 437 ~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~m 515 (733)
T COG1203 437 VKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVL 515 (733)
T ss_pred hccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCee
Confidence 4567899999999999999999999988889999999999999998886553 112245588999999999998 5555
Q ss_pred EEcCCCCCcchHHHHHHhHHhhC--CcccEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 044798 837 IIFDPDWNPSTDVQARERAWRIG--QKQDVTVYRLITRGTIEEKVYHRQIYKHFLT 890 (1231)
Q Consensus 837 Ii~Dp~WNPs~d~QAigRa~RiG--Qkk~V~VYRLit~gTIEEkIy~rQ~~K~~L~ 890 (1231)
| -|+. -....+||.||++|-| ....++||-..-.+....+.|+....+..-.
T Consensus 516 I-Te~a-PidSLIQR~GRv~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 569 (733)
T COG1203 516 I-TELA-PIDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKSL 569 (733)
T ss_pred e-ecCC-CHHHHHHHHHHHhhcccccCCceeEeecccCCCchhhhhhcchhhhccc
Confidence 4 3332 2456789999999999 5556899888888888888888777665443
No 123
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.27 E-value=7.7e-11 Score=126.78 Aligned_cols=273 Identities=21% Similarity=0.247 Sum_probs=169.3
Q ss_pred hHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHH-HHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHH---HcCCCe
Q 044798 403 FDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQ-VLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEK---WYPSFH 477 (1231)
Q Consensus 403 ~pyQkegV~wL~el~~~~~GgILADEMGLGKTIq-aIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~k---w~p~lr 477 (1231)
-.-|.+||... .-+-..+--.-.|+|||-. +++.+..+-....--.+||+|-+ .|..|..+|+.+ +.|+.+
T Consensus 66 sevqhecipqa----ilgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vk 141 (387)
T KOG0329|consen 66 SEVQHECIPQA----ILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVK 141 (387)
T ss_pred hHhhhhhhhHH----hhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCce
Confidence 35577777544 2234455567789999965 44444444333333468999995 777788887554 569999
Q ss_pred EEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHh--hhhc
Q 044798 478 VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGE--KLLD 555 (1231)
Q Consensus 478 V~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~--~L~~ 555 (1231)
+.++.|+..-.. -...+.+.++||+.|++++..... .|..
T Consensus 142 vaVFfGG~~Ikk--------------------------------------dee~lk~~PhivVgTPGrilALvr~k~l~l 183 (387)
T KOG0329|consen 142 VSVFFGGLFIKK--------------------------------------DEELLKNCPHIVVGTPGRILALVRNRSLNL 183 (387)
T ss_pred EEEEEcceeccc--------------------------------------cHHHHhCCCeEEEcCcHHHHHHHHhccCch
Confidence 999998754210 012234578999999999876543 2444
Q ss_pred CCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCCC
Q 044798 556 VEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYA 635 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~ 635 (1231)
......||||+.++..
T Consensus 184 k~vkhFvlDEcdkmle---------------------------------------------------------------- 199 (387)
T KOG0329|consen 184 KNVKHFVLDECDKMLE---------------------------------------------------------------- 199 (387)
T ss_pred hhcceeehhhHHHHHH----------------------------------------------------------------
Confidence 5677899999987610
Q ss_pred CCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhh-cCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchhHH
Q 044798 636 NASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNA-QLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYG 714 (1231)
Q Consensus 636 ~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~-dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~ 714 (1231)
..=.||...++.. .-+.|........++.+-|-+.+.|+...-.--+-+...-.+-+
T Consensus 200 ----------------------~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHG 257 (387)
T KOG0329|consen 200 ----------------------QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHG 257 (387)
T ss_pred ----------------------HHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhh
Confidence 0001222222221 12345555666777777777777766542110000011111111
Q ss_pred HHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeC
Q 044798 715 IDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDG 794 (1231)
Q Consensus 715 i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdG 794 (1231)
+. + -|.......|...|.++|..+.= ..|+||..+++-+.
T Consensus 258 Lq---Q-----------------~YvkLke~eKNrkl~dLLd~LeF--NQVvIFvKsv~Rl~------------------ 297 (387)
T KOG0329|consen 258 LQ---Q-----------------YYVKLKENEKNRKLNDLLDVLEF--NQVVIFVKSVQRLS------------------ 297 (387)
T ss_pred HH---H-----------------HHHhhhhhhhhhhhhhhhhhhhh--cceeEeeehhhhhh------------------
Confidence 11 1 01112234566666677665533 38999987765411
Q ss_pred CCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcc
Q 044798 795 LTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQ 862 (1231)
Q Consensus 795 sts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk 862 (1231)
|+. + |++|++.|+|+++...|.||+||.|-.+.+|.++.+|++|.|.+-
T Consensus 298 -------------f~k----r--~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkg 346 (387)
T KOG0329|consen 298 -------------FQK----R--LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 346 (387)
T ss_pred -------------hhh----h--hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcccccc
Confidence 311 2 678999999999999999999999999999999999999999764
No 124
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.26 E-value=1.5e-10 Score=147.71 Aligned_cols=310 Identities=13% Similarity=0.111 Sum_probs=203.7
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeE
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHV 478 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV 478 (1231)
...+|-|.++|.-. ..+..+++-..+|-||.+.-. +...-..+-+|||.|. +||...+..+... +++.
T Consensus 263 ~~FR~~Q~eaI~~~----l~Gkd~fvlmpTG~GKSLCYQ-----lPA~l~~gitvVISPL~SLm~DQv~~L~~~--~I~a 331 (941)
T KOG0351|consen 263 KGFRPNQLEAINAT----LSGKDCFVLMPTGGGKSLCYQ-----LPALLLGGVTVVISPLISLMQDQVTHLSKK--GIPA 331 (941)
T ss_pred ccCChhHHHHHHHH----HcCCceEEEeecCCceeeEee-----ccccccCCceEEeccHHHHHHHHHHhhhhc--Ccce
Confidence 34789999999733 478899999999999997531 1111123589999995 8888777776332 4555
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcC--CCCEEEeCHHHHHHHHhh----
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRS--ESGLLITTYEQLRLLGEK---- 552 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~--~~~VvItTYe~Lr~~~~~---- 552 (1231)
..+++........ .+...+... ..+|+-.|++.+......
T Consensus 332 ~~L~s~q~~~~~~----------------------------------~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~ 377 (941)
T KOG0351|consen 332 CFLSSIQTAAERL----------------------------------AILQKLANGNPIIKILYVTPEKVVASEGLLESL 377 (941)
T ss_pred eeccccccHHHHH----------------------------------HHHHHHhCCCCeEEEEEeCHHHhhcccchhhHH
Confidence 5555443321110 122222223 468999999988543221
Q ss_pred --hh-cCCccEEEEeCCcccCCcc-------hHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHH
Q 044798 553 --LL-DVEWGYAVLDEGHRIRNPN-------AEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFE 622 (1231)
Q Consensus 553 --L~-~~~wd~VILDEAH~IKN~~-------Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~ 622 (1231)
|. ..-.-++|+||||...... .........+.....|.||||--..--.++...+..-.|..+.
T Consensus 378 ~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~------ 451 (941)
T KOG0351|consen 378 ADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFK------ 451 (941)
T ss_pred HhccCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceec------
Confidence 11 1225789999998875432 2222333333444557788886555445555544444333111
Q ss_pred HhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHH
Q 044798 623 AEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVE 702 (1231)
Q Consensus 623 ~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~ 702 (1231)
.-| .++...+-|.-+.+..
T Consensus 452 ~sf----------------------------------------------nR~NL~yeV~~k~~~~--------------- 470 (941)
T KOG0351|consen 452 SSF----------------------------------------------NRPNLKYEVSPKTDKD--------------- 470 (941)
T ss_pred ccC----------------------------------------------CCCCceEEEEeccCcc---------------
Confidence 111 1122222222222100
Q ss_pred HHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHH
Q 044798 703 QILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFL 782 (1231)
Q Consensus 703 ~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L 782 (1231)
....+...++. ...+.-.||||.++.+.+.+...|
T Consensus 471 --------------------------------------------~~~~~~~~~~~-~~~~~s~IIYC~sr~~ce~vs~~L 505 (941)
T KOG0351|consen 471 --------------------------------------------ALLDILEESKL-RHPDQSGIIYCLSRKECEQVSAVL 505 (941)
T ss_pred --------------------------------------------chHHHHHHhhh-cCCCCCeEEEeCCcchHHHHHHHH
Confidence 00001111121 223568999999999999999999
Q ss_pred HHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcc
Q 044798 783 IASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQ 862 (1231)
Q Consensus 783 ~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk 862 (1231)
...|++...+|.+++..+|+.+-..|..+. ++| ++.|=|.|.|||-..+.-||+|..|=+..-|.|-.||++|-|+..
T Consensus 506 ~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~-~~V-ivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGRDG~~s 583 (941)
T KOG0351|consen 506 RSLGKSAAFYHAGLPPKERETVQKAWMSDK-IRV-IVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGRDGLPS 583 (941)
T ss_pred HHhchhhHhhhcCCCHHHHHHHHHHHhcCC-CeE-EEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCcCCCcc
Confidence 999999999999999999999999999985 555 677889999999999999999999999999999999999999998
Q ss_pred cEEEEE
Q 044798 863 DVTVYR 868 (1231)
Q Consensus 863 ~V~VYR 868 (1231)
.+..|+
T Consensus 584 ~C~l~y 589 (941)
T KOG0351|consen 584 SCVLLY 589 (941)
T ss_pred eeEEec
Confidence 876654
No 125
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.25 E-value=6.7e-11 Score=122.51 Aligned_cols=157 Identities=19% Similarity=0.241 Sum_probs=111.4
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCC--CeEEE
Q 044798 404 DYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPS--FHVEL 480 (1231)
Q Consensus 404 pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~--lrV~i 480 (1231)
|+|.+++.-+. .+...|+...+|+|||..++..+......+....+||+||. .++.|-..++.+++.. .++..
T Consensus 2 ~~Q~~~~~~i~----~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 2 PLQQEAIEAII----SGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp HHHHHHHHHHH----TTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred HHHHHHHHHHH----cCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccc
Confidence 79999998773 56779999999999999988766665555545699999995 7888999999999854 67777
Q ss_pred EecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--hhcCCc
Q 044798 481 LHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLDVEW 558 (1231)
Q Consensus 481 l~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~--L~~~~w 558 (1231)
+++...... .....+....+|+|+|++.|...... +.....
T Consensus 78 ~~~~~~~~~-------------------------------------~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~ 120 (169)
T PF00270_consen 78 LHGGQSISE-------------------------------------DQREVLSNQADILVTTPEQLLDLISNGKINISRL 120 (169)
T ss_dssp ESTTSCHHH-------------------------------------HHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTE
T ss_pred ccccccccc-------------------------------------cccccccccccccccCcchhhccccccccccccc
Confidence 765432110 11112235679999999999877764 222348
Q ss_pred cEEEEeCCcccCCc--chHHHHHHHhc---ccccEEEecccCccCChHH
Q 044798 559 GYAVLDEGHRIRNP--NAEISLVCKQL---QTVHRIIMTGAPIQNKLSE 602 (1231)
Q Consensus 559 d~VILDEAH~IKN~--~Sk~skalk~L---~t~~RllLTGTPiqNnl~E 602 (1231)
++||+||+|.+... .......+..+ ...+.++|||||- .++..
T Consensus 121 ~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~SAT~~-~~~~~ 168 (169)
T PF00270_consen 121 SLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILLSATLP-SNVEK 168 (169)
T ss_dssp SEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEEESSST-HHHHH
T ss_pred eeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEEeeCCC-hhHhh
Confidence 99999999999763 22333444444 3356789999997 55443
No 126
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.24 E-value=1.2e-10 Score=124.90 Aligned_cols=154 Identities=20% Similarity=0.126 Sum_probs=104.6
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhh-c--CCCCcEEEEeCC-cchHHHHHHHHHHcC--
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF-S--NMYKPSIVVCPV-TLLRQWKREAEKWYP-- 474 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~-s--~~~kpvLIV~P~-sLl~QW~~E~~kw~p-- 474 (1231)
.+++||.+++.-+. .+.+.++..++|+|||+..+..+..... . ....++|||||. .++.||...+..+..
T Consensus 21 ~~~~~Q~~~~~~~~----~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 21 KPTPIQARAIPPLL----SGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCHHHHHHHHHHh----cCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 47899999998774 3778999999999999985544443333 3 244679999995 788899999998864
Q ss_pred CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--
Q 044798 475 SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK-- 552 (1231)
Q Consensus 475 ~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~-- 552 (1231)
+..+..+++...... .........+|+|+|++.+......
T Consensus 97 ~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~iiv~T~~~l~~~l~~~~ 138 (203)
T cd00268 97 NLKVVVIYGGTSIDK--------------------------------------QIRKLKRGPHIVVATPGRLLDLLERGK 138 (203)
T ss_pred CceEEEEECCCCHHH--------------------------------------HHHHhcCCCCEEEEChHHHHHHHHcCC
Confidence 455566655432110 0111224568999999988664432
Q ss_pred hhcCCccEEEEeCCcccCCcc--hHHHHHHHhcc-cccEEEecccCc
Q 044798 553 LLDVEWGYAVLDEGHRIRNPN--AEISLVCKQLQ-TVHRIIMTGAPI 596 (1231)
Q Consensus 553 L~~~~wd~VILDEAH~IKN~~--Sk~skalk~L~-t~~RllLTGTPi 596 (1231)
+.-..++++|+||+|.+-+.. ..+...+..+. ....+++||||-
T Consensus 139 ~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~~~~~~~~SAT~~ 185 (203)
T cd00268 139 LDLSKVKYLVLDEADRMLDMGFEDQIREILKLLPKDRQTLLFSATMP 185 (203)
T ss_pred CChhhCCEEEEeChHHhhccChHHHHHHHHHhCCcccEEEEEeccCC
Confidence 222357899999999987543 22333444554 355688999996
No 127
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.19 E-value=2.1e-09 Score=133.68 Aligned_cols=103 Identities=18% Similarity=0.145 Sum_probs=71.6
Q ss_pred HhcCCeEEEEeccHHHHHHHHHHHHHc----CC-------------------cEEEEeCCCCHHHHHHHHHHHhCCCCce
Q 044798 759 KDQGHRVLLFAQTQQMLDILESFLIAS----GY-------------------EYRRMDGLTPVKQRMALIDEYNNSSDVF 815 (1231)
Q Consensus 759 ~~~g~KVLVFSQ~~~~LdiLe~~L~~~----Gi-------------------~~~rIdGsts~~eRq~iId~Fn~d~~i~ 815 (1231)
..+|+.|+||+..+...-...+.|... |. .+..-+.++.-..|+..-+.|..+ .+.
T Consensus 346 ~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G-~i~ 424 (1230)
T KOG0952|consen 346 LQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEG-HIK 424 (1230)
T ss_pred HHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcC-Cce
Confidence 355788888888765544444444322 21 123345567788899999999988 455
Q ss_pred EEEEeccccccccCCCCCCEEEEcCCCCCcch----------HHHHHHhHHhhCCccc
Q 044798 816 IFILTTKVGGLGTNLTGANRVIIFDPDWNPST----------DVQARERAWRIGQKQD 863 (1231)
Q Consensus 816 VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~----------d~QAigRa~RiGQkk~ 863 (1231)
| |++|...+-|+||++--.||-=.+-|+++. ..|-+|||+|.+=...
T Consensus 425 v-L~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~ 481 (1230)
T KOG0952|consen 425 V-LCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSS 481 (1230)
T ss_pred E-EEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCC
Confidence 5 889999999999996555554566777764 6799999999864444
No 128
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.17 E-value=6.5e-10 Score=126.74 Aligned_cols=103 Identities=19% Similarity=0.230 Sum_probs=94.9
Q ss_pred eEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCC
Q 044798 764 RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDW 843 (1231)
Q Consensus 764 KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~W 843 (1231)
--||||.++...+.+.-.|...||+...+|.+....+|..+-+.+.++. + .+|+.|...|.|++-+.+.-||+++++-
T Consensus 257 CGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~-~-PvI~AT~SFGMGVDKp~VRFViHW~~~q 334 (641)
T KOG0352|consen 257 CGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNE-I-PVIAATVSFGMGVDKPDVRFVIHWSPSQ 334 (641)
T ss_pred ceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCC-C-CEEEEEeccccccCCcceeEEEecCchh
Confidence 6699999999999999999999999999999999999999999999874 3 4477899999999999999999999999
Q ss_pred CcchHHHHHHhHHhhCCcccEEEEE
Q 044798 844 NPSTDVQARERAWRIGQKQDVTVYR 868 (1231)
Q Consensus 844 NPs~d~QAigRa~RiGQkk~V~VYR 868 (1231)
|.+-|-|--||++|-|-..=+..|+
T Consensus 335 n~AgYYQESGRAGRDGk~SyCRLYY 359 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDGKRSYCRLYY 359 (641)
T ss_pred hhHHHHHhccccccCCCccceeeee
Confidence 9999999999999999776677764
No 129
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.15 E-value=4e-09 Score=129.98 Aligned_cols=121 Identities=21% Similarity=0.226 Sum_probs=98.7
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecc
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTK 822 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTk 822 (1231)
....|..++.+-+..+...|..|||.+.+....+.|...|...|+++..|+..... .-..+|.+=-. ...+-++|.
T Consensus 408 t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk~~~-~EA~IIa~AG~---~gaVTIATN 483 (764)
T PRK12326 408 TAAEKNDAIVEHIAEVHETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAKNDA-EEARIIAEAGK---YGAVTVSTQ 483 (764)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccCchH-hHHHHHHhcCC---CCcEEEEec
Confidence 45678999999888888999999999999999999999999999999999987543 33445544322 234467899
Q ss_pred ccccccCCC---------------CCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEE
Q 044798 823 VGGLGTNLT---------------GANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVY 867 (1231)
Q Consensus 823 vGg~GLNLt---------------~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VY 867 (1231)
.+|+|.++. +-=+||....+-|--.+.|.+||++|.|..-....|
T Consensus 484 MAGRGTDIkLg~~~~~~~~~V~~~GGLhVIgTerheSrRID~QLrGRaGRQGDpGss~f~ 543 (764)
T PRK12326 484 MAGRGTDIRLGGSDEADRDRVAELGGLHVIGTGRHRSERLDNQLRGRAGRQGDPGSSVFF 543 (764)
T ss_pred CCCCccCeecCCCcccchHHHHHcCCcEEEeccCCchHHHHHHHhcccccCCCCCceeEE
Confidence 999998875 345899999999999999999999999987665544
No 130
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.11 E-value=2.8e-08 Score=129.02 Aligned_cols=86 Identities=15% Similarity=0.120 Sum_probs=63.7
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHH-HH---HHHcC-
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKR-EA---EKWYP- 474 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~-E~---~kw~p- 474 (1231)
..+|+|.+.+..+.+....+..+++-..+|+|||+..+..+..... ..++++|.||+ .|..||.. ++ .+.++
T Consensus 245 ~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~--~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~~ 322 (850)
T TIGR01407 245 EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI--TEKPVVISTNTKVLQSQLLEKDIPLLNEILNF 322 (850)
T ss_pred ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--CCCeEEEEeCcHHHHHHHHHHHHHHHHHHcCC
Confidence 3689999998888887777788888899999999987766544332 35699999996 55778754 44 34443
Q ss_pred CCeEEEEecccchh
Q 044798 475 SFHVELLHDSAQDL 488 (1231)
Q Consensus 475 ~lrV~il~gs~~~~ 488 (1231)
++++.++.|...+.
T Consensus 323 ~~~~~~~kG~~~yl 336 (850)
T TIGR01407 323 KINAALIKGKSNYL 336 (850)
T ss_pred CceEEEEEcchhhc
Confidence 47788888777653
No 131
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.05 E-value=2.3e-08 Score=125.98 Aligned_cols=122 Identities=21% Similarity=0.253 Sum_probs=98.5
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEec
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTT 821 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlST 821 (1231)
.....|..++.+-+..+...|..|||-+.+...-+.|..+|...|+++..++-... ..-..+|.+ .+ ....+-|+|
T Consensus 429 ~t~~eK~~Ai~~ei~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~-~~EA~IIa~--AG-~~GaVTIAT 504 (913)
T PRK13103 429 LTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYH-EKEAEIIAQ--AG-RPGALTIAT 504 (913)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcCCcHHHhccccc-hhHHHHHHc--CC-CCCcEEEec
Confidence 34578999999999999999999999999999999999999999999988887643 222344442 33 223446789
Q ss_pred cccccccCCC-------------------------------------CCCEEEEcCCCCCcchHHHHHHhHHhhCCcccE
Q 044798 822 KVGGLGTNLT-------------------------------------GANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864 (1231)
Q Consensus 822 kvGg~GLNLt-------------------------------------~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V 864 (1231)
..+|+|.|+. +-=+||.-..+-|--.+.|.+||++|.|..-..
T Consensus 505 NMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS 584 (913)
T PRK13103 505 NMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSS 584 (913)
T ss_pred cCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCce
Confidence 9999999874 345789999999999999999999999987765
Q ss_pred EEE
Q 044798 865 TVY 867 (1231)
Q Consensus 865 ~VY 867 (1231)
..|
T Consensus 585 ~f~ 587 (913)
T PRK13103 585 RFY 587 (913)
T ss_pred EEE
Confidence 554
No 132
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.04 E-value=4.9e-09 Score=131.70 Aligned_cols=71 Identities=27% Similarity=0.424 Sum_probs=59.4
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEE-----cCCC---C---CcchHHHHHHh
Q 044798 786 GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVII-----FDPD---W---NPSTDVQARER 854 (1231)
Q Consensus 786 Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi-----~Dp~---W---NPs~d~QAigR 854 (1231)
.|.|..-|.+++-.+|...-+-|.++ .+.| |++|...+-|+||++ +.||| |||. | .|-..+|..||
T Consensus 607 pygfaIHhAGl~R~dR~~~EdLf~~g-~iqv-lvstatlawgvnlpa-htViikgtqvy~pekg~w~elsp~dv~qmlgr 683 (1674)
T KOG0951|consen 607 PYGFAIHHAGLNRKDRELVEDLFADG-HIQV-LVSTATLAWGVNLPA-HTVIIKGTQVYDPEKGRWTELSPLDVMQMLGR 683 (1674)
T ss_pred hccceeeccCCCcchHHHHHHHHhcC-ceeE-EEeehhhhhhcCCCc-ceEEecCccccCcccCccccCCHHHHHHHHhh
Confidence 36788899999999999999999988 5666 789999999999995 55665 6664 4 57789999999
Q ss_pred HHhhC
Q 044798 855 AWRIG 859 (1231)
Q Consensus 855 a~RiG 859 (1231)
++|.+
T Consensus 684 agrp~ 688 (1674)
T KOG0951|consen 684 AGRPQ 688 (1674)
T ss_pred cCCCc
Confidence 99975
No 133
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=98.98 E-value=4.3e-07 Score=107.21 Aligned_cols=134 Identities=17% Similarity=0.211 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccc
Q 044798 746 EKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGG 825 (1231)
Q Consensus 746 ~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg 825 (1231)
+-+.-|+.-++...+.++++||-+-++.|.+-|..+|...|+++..||.....-+|..+|...+.+. +.| |+-....-
T Consensus 430 ~QvdDL~~EI~~r~~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~-~Dv-LVGINLLR 507 (663)
T COG0556 430 GQVDDLLSEIRKRVAKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE-FDV-LVGINLLR 507 (663)
T ss_pred CcHHHHHHHHHHHHhcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCC-ccE-EEeehhhh
Confidence 3444455555555677999999999999999999999999999999999999999999999999984 444 77889999
Q ss_pred cccCCCCCCEEEEcCCCC-----CcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHH
Q 044798 826 LGTNLTGANRVIIFDPDW-----NPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHR 882 (1231)
Q Consensus 826 ~GLNLt~AnrVIi~Dp~W-----NPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~r 882 (1231)
+||+|+.++.|.|+|.+- +-...+|-|||+.|--.- .|..|-=.+.+++++.|-+.
T Consensus 508 EGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~G-kvIlYAD~iT~sM~~Ai~ET 568 (663)
T COG0556 508 EGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNG-KVILYADKITDSMQKAIDET 568 (663)
T ss_pred ccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCC-eEEEEchhhhHHHHHHHHHH
Confidence 999999999999999764 778899999999994322 25555444555666555443
No 134
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=98.97 E-value=1e-09 Score=125.09 Aligned_cols=95 Identities=22% Similarity=0.303 Sum_probs=88.3
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEE
Q 044798 762 GHRVLLFAQTQQMLDILESFLIASG---YEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVII 838 (1231)
Q Consensus 762 g~KVLVFSQ~~~~LdiLe~~L~~~G---i~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi 838 (1231)
-+|.||||..++-.|-|++++..+| |.++.++|+..+.+|.+-++.|.... .-||++|+++++||++++...+|+
T Consensus 505 mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~d--vkflictdvaargldi~g~p~~in 582 (725)
T KOG0349|consen 505 MDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFD--VKFLICTDVAARGLDITGLPFMIN 582 (725)
T ss_pred cCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcC--eEEEEEehhhhccccccCCceEEE
Confidence 4699999999999999999999874 78999999999999999999999864 568999999999999999999999
Q ss_pred cCCCCCcchHHHHHHhHHhh
Q 044798 839 FDPDWNPSTDVQARERAWRI 858 (1231)
Q Consensus 839 ~Dp~WNPs~d~QAigRa~Ri 858 (1231)
...|-....|.+||||++|.
T Consensus 583 vtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 583 VTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred EecCcccchhhhhhhccchh
Confidence 99999999999999999885
No 135
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.96 E-value=6.7e-08 Score=120.85 Aligned_cols=120 Identities=19% Similarity=0.241 Sum_probs=98.5
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHH-HHHHHhCCCCceEEEEec
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMA-LIDEYNNSSDVFIFILTT 821 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~-iId~Fn~d~~i~VfLlST 821 (1231)
....|..++.+-+..+...|..|||.|.+....+.|..+|...|+++..++.... +++. +|. +.+ ....+.++|
T Consensus 407 t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa--~AG-~~GaVTIAT 481 (925)
T PRK12903 407 TKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA--KAG-QKGAITIAT 481 (925)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH--hCC-CCCeEEEec
Confidence 4568899999988888889999999999999999999999999999999998743 3433 443 334 234456789
Q ss_pred cccccccCCCCCC--------EEEEcCCCCCcchHHHHHHhHHhhCCcccEEEE
Q 044798 822 KVGGLGTNLTGAN--------RVIIFDPDWNPSTDVQARERAWRIGQKQDVTVY 867 (1231)
Q Consensus 822 kvGg~GLNLt~An--------rVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VY 867 (1231)
..+|+|.++.-.. +||..+.+-|--.+.|.+||++|.|..-....|
T Consensus 482 NMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~ 535 (925)
T PRK12903 482 NMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFF 535 (925)
T ss_pred ccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEE
Confidence 9999999986332 899999999999999999999999987665554
No 136
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=98.96 E-value=3.4e-08 Score=111.17 Aligned_cols=313 Identities=16% Similarity=0.129 Sum_probs=201.7
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeE
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHV 478 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV 478 (1231)
.+.+|.|+++++-. ..+...+|...+|-||++.-- +...-..+-+|||||. +|+....-.++...-+.
T Consensus 93 ekfrplq~~ain~~----ma~ed~~lil~tgggkslcyq-----lpal~adg~alvi~plislmedqil~lkqlgi~a-- 161 (695)
T KOG0353|consen 93 EKFRPLQLAAINAT----MAGEDAFLILPTGGGKSLCYQ-----LPALCADGFALVICPLISLMEDQILQLKQLGIDA-- 161 (695)
T ss_pred HhcChhHHHHhhhh----hccCceEEEEeCCCccchhhh-----hhHHhcCCceEeechhHHHHHHHHHHHHHhCcch--
Confidence 45799999999765 567789999999999997532 1111134789999995 78887777776653221
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHH-------h
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLG-------E 551 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~-------~ 551 (1231)
..+.... ++..-+|-...-....+...++..|++.+.... .
T Consensus 162 s~lnans--------------------------------ske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek 209 (695)
T KOG0353|consen 162 SMLNANS--------------------------------SKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK 209 (695)
T ss_pred hhccCcc--------------------------------cHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH
Confidence 1111111 111111111000111245678889998875432 2
Q ss_pred hhhcCCccEEEEeCCcccCC-------cchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHh
Q 044798 552 KLLDVEWGYAVLDEGHRIRN-------PNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAE 624 (1231)
Q Consensus 552 ~L~~~~wd~VILDEAH~IKN-------~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~ 624 (1231)
.+....|.++-+||.|.+.. ..+.....-++++....|.||+|...|-+.+.-.++..-. .-.|..-
T Consensus 210 a~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~------~~tf~a~ 283 (695)
T KOG0353|consen 210 ALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEA------AFTFRAG 283 (695)
T ss_pred HhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHh------hheeecc
Confidence 34455688999999987743 2223333444567777789999998777766555443210 0012222
Q ss_pred hccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHH
Q 044798 625 FAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQI 704 (1231)
Q Consensus 625 f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~i 704 (1231)
|.. |.....|+ -++...
T Consensus 284 fnr---------------------------------------------~nl~yev~-qkp~n~----------------- 300 (695)
T KOG0353|consen 284 FNR---------------------------------------------PNLKYEVR-QKPGNE----------------- 300 (695)
T ss_pred cCC---------------------------------------------CCceeEee-eCCCCh-----------------
Confidence 211 11111111 111111
Q ss_pred hhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHH
Q 044798 705 LDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKD--QGHRVLLFAQTQQMLDILESFL 782 (1231)
Q Consensus 705 l~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~--~g~KVLVFSQ~~~~LdiLe~~L 782 (1231)
-..+.++.+.++. .|..-||||-+..-.+-+...|
T Consensus 301 -------------------------------------------dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~al 337 (695)
T KOG0353|consen 301 -------------------------------------------DDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKAL 337 (695)
T ss_pred -------------------------------------------HHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHH
Confidence 1112222222222 2678899999999999999999
Q ss_pred HHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHH------------
Q 044798 783 IASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQ------------ 850 (1231)
Q Consensus 783 ~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~Q------------ 850 (1231)
+..||..-.++..+.+..|.-+-..+-.+ .+.| ++.|-+.|.||+-+.+.-||+-..|-+...|-|
T Consensus 338 kn~gi~a~~yha~lep~dks~~hq~w~a~-eiqv-ivatvafgmgidkpdvrfvihhsl~ksienyyqasarillrmtkq 415 (695)
T KOG0353|consen 338 KNHGIHAGAYHANLEPEDKSGAHQGWIAG-EIQV-IVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQASARILLRMTKQ 415 (695)
T ss_pred HhcCccccccccccCcccccccccccccc-ceEE-EEEEeeecccCCCCCeeEEEecccchhHHHHHHHHHHHHHHHhhh
Confidence 99999999999999988888777777776 5777 567789999999999999999999999999999
Q ss_pred -------------------------------HHHhHHhhCCcccEEEEEE
Q 044798 851 -------------------------------ARERAWRIGQKQDVTVYRL 869 (1231)
Q Consensus 851 -------------------------------AigRa~RiGQkk~V~VYRL 869 (1231)
-.||++|-|++-++..|+=
T Consensus 416 knksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~ 465 (695)
T KOG0353|consen 416 KNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYG 465 (695)
T ss_pred cccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEec
Confidence 4588899999988766653
No 137
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.95 E-value=2.3e-07 Score=116.04 Aligned_cols=319 Identities=18% Similarity=0.249 Sum_probs=180.9
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCC---C
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPS---F 476 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~---l 476 (1231)
.++..|+.....+ ..+...-+..++|+|||.-.+.. +++.....++++||+|+ +|+.|-.+-+.++... .
T Consensus 82 ~~ws~QR~WakR~----~rg~SFaiiAPTGvGKTTfg~~~--sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~ 155 (1187)
T COG1110 82 RPWSAQRVWAKRL----VRGKSFAIIAPTGVGKTTFGLLM--SLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSL 155 (1187)
T ss_pred CchHHHHHHHHHH----HcCCceEEEcCCCCchhHHHHHH--HHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCc
Confidence 4677888766554 34455555578999999654433 33333445899999996 7788888888888632 3
Q ss_pred eEEE-EecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhc
Q 044798 477 HVEL-LHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLD 555 (1231)
Q Consensus 477 rV~i-l~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~ 555 (1231)
++.+ ||+.-... . -...+.++....++|+|||-..+....+.|.+
T Consensus 156 ~~~~~yh~~l~~~---e-------------------------------kee~le~i~~gdfdIlitTs~FL~k~~e~L~~ 201 (1187)
T COG1110 156 DVLVVYHSALPTK---E-------------------------------KEEALERIESGDFDILITTSQFLSKRFEELSK 201 (1187)
T ss_pred ceeeeeccccchH---H-------------------------------HHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc
Confidence 3333 66543211 1 11255666677899999999999999999999
Q ss_pred CCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCCC
Q 044798 556 VEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYA 635 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~ 635 (1231)
.+||+|++|.++.+.-.+-.+-.. +.|.|=|= .-+..-|.++.+ ...+.
T Consensus 202 ~kFdfifVDDVDA~LkaskNvDri---------L~LlGf~e-E~i~~a~~~~~l------------r~~~~--------- 250 (1187)
T COG1110 202 LKFDFIFVDDVDAILKASKNVDRL---------LRLLGFSE-EVIESAYELIKL------------RRKLY--------- 250 (1187)
T ss_pred cCCCEEEEccHHHHHhccccHHHH---------HHHcCCCH-HHHHHHHHHHHH------------HHHhh---------
Confidence 999999999998763221111111 11222110 000001111111 00000
Q ss_pred CCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCC----HHHHHHHHHHHhhHHHHHHhhcCcch
Q 044798 636 NASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLT----EEQRAVYRAFLASSEVEQILDGSRNS 711 (1231)
Q Consensus 636 ~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt----~~Qr~lY~~~l~s~~~~~il~~~~~~ 711 (1231)
..+....+++.+...-.++.+. .. +.-..++..-| ..-..+|+.++... +
T Consensus 251 ---------~~~~~~~~~e~~~~~e~~~~~~----r~--k~g~LvvsSATg~~rg~R~~LfReLlgFe-v---------- 304 (1187)
T COG1110 251 ---------GEKRAERVREELREVEREREKK----RR--KLGILVVSSATGKPRGSRLKLFRELLGFE-V---------- 304 (1187)
T ss_pred ---------hhhhHHHHHHHHHHHHHHHHHh----cc--CCceEEEeeccCCCCCchHHHHHHHhCCc-c----------
Confidence 0011111222222111111110 11 11122222211 12334566554321 0
Q ss_pred hHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEecc---HHHHHHHHHHHHHcCCc
Q 044798 712 LYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQT---QQMLDILESFLIASGYE 788 (1231)
Q Consensus 712 l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~---~~~LdiLe~~L~~~Gi~ 788 (1231)
-.+...||.|.+- |.. +.-...+.++++.+ |.-.|||.+. .+.++.|..+|+..|++
T Consensus 305 G~~~~~LRNIvD~--------------y~~---~~~~e~~~elvk~l---G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~ 364 (1187)
T COG1110 305 GSGGEGLRNIVDI--------------YVE---SESLEKVVELVKKL---GDGGLIFVPIDYGREKAEELAEYLRSHGIN 364 (1187)
T ss_pred Cccchhhhheeee--------------ecc---CccHHHHHHHHHHh---CCCeEEEEEcHHhHHHHHHHHHHHHhcCce
Confidence 0112334444321 111 12334455566544 6678999998 89999999999999999
Q ss_pred EEEEeCCCCHHHHHHHHHHHhCCCCceEEEEe---ccccccccCCC-CCCEEEEcCCC
Q 044798 789 YRRMDGLTPVKQRMALIDEYNNSSDVFIFILT---TKVGGLGTNLT-GANRVIIFDPD 842 (1231)
Q Consensus 789 ~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlS---TkvGg~GLNLt-~AnrVIi~Dp~ 842 (1231)
+..++.. ....++.|..+ .+.|++-. +.+.-+||||+ .+..+|||..|
T Consensus 365 a~~~~a~-----~~~~le~F~~G-eidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 365 AELIHAE-----KEEALEDFEEG-EVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred EEEeecc-----chhhhhhhccC-ceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 9888763 36789999998 67776643 45667999997 68889999888
No 138
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.93 E-value=1.2e-08 Score=115.21 Aligned_cols=245 Identities=21% Similarity=0.265 Sum_probs=148.0
Q ss_pred CCCCcccccCCcccChhhh--hhchHHHHHHHHHHHHHHc------CCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCc
Q 044798 381 NEPPFVTLEGGLKIPESIF--NNLFDYQKVGVQWLWELHC------QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKP 452 (1231)
Q Consensus 381 ~~~~~~~~~~~~~iP~~i~--~~L~pyQkegV~wL~el~~------~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kp 452 (1231)
-.||++. -.+.+|..+. ..|-.-|+++|-+..+.+. .+.|.+|+|.+|.||-.|+.++|......+..++
T Consensus 17 v~~P~~~--y~~~lp~~~~~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~ 94 (303)
T PF13872_consen 17 VAPPDPT--YRLHLPEEVIDSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRA 94 (303)
T ss_pred CCCCCCC--cccCCCHHHHhcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCce
Confidence 3455543 3457788653 4689999999999988776 3678899999999999999999988777776666
Q ss_pred EEEEeCCcchHHHHHHHHHHcC-CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhh
Q 044798 453 SIVVCPVTLLRQWKREAEKWYP-SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRV 531 (1231)
Q Consensus 453 vLIV~P~sLl~QW~~E~~kw~p-~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~ 531 (1231)
+-|-+...|...-.+.+..-.. .+.+..+.... +. ..
T Consensus 95 vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~~~~--------------------------~~----------------~~ 132 (303)
T PF13872_consen 95 VWVSVSNDLKYDAERDLRDIGADNIPVHPLNKFK--------------------------YG----------------DI 132 (303)
T ss_pred EEEECChhhhhHHHHHHHHhCCCcccceechhhc--------------------------cC----------------cC
Confidence 6666667888877677765431 12222221100 00 00
Q ss_pred hcCCCCEEEeCHHHHHHHHh-------h---hhc---CCc-cEEEEeCCcccCCcch------HHHHHHHhc----cccc
Q 044798 532 LRSESGLLITTYEQLRLLGE-------K---LLD---VEW-GYAVLDEGHRIRNPNA------EISLVCKQL----QTVH 587 (1231)
Q Consensus 532 ~~~~~~VvItTYe~Lr~~~~-------~---L~~---~~w-d~VILDEAH~IKN~~S------k~skalk~L----~t~~ 587 (1231)
..-..+|+.+||.+|+.... . |.. ..| .+||+||+|+.+|..+ ++..++..| ..-+
T Consensus 133 ~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~AR 212 (303)
T PF13872_consen 133 IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPNAR 212 (303)
T ss_pred CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCCCc
Confidence 11234799999999976531 1 111 123 3899999999999755 566666655 3446
Q ss_pred EEEecccCccCChHHHHHhhhhhcCCCCC------ChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHH--hHH
Q 044798 588 RIIMTGAPIQNKLSELWSLFDFVFPGKLG------VLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLI--MPY 659 (1231)
Q Consensus 588 RllLTGTPiqNnl~EL~SLl~FL~P~~lg------~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI--~p~ 659 (1231)
.+..|||...+ .-+|..+.+-+.|| ++..|.+ .+..++... ++.+-.-+ ...
T Consensus 213 vvY~SATgase----p~NmaYm~RLGLWG~gtpf~~~~~f~~----a~~~gGv~a------------mE~vA~dlKa~G~ 272 (303)
T PF13872_consen 213 VVYASATGASE----PRNMAYMSRLGLWGPGTPFPDFDDFLE----AMEKGGVGA------------MEMVAMDLKARGM 272 (303)
T ss_pred EEEecccccCC----CceeeeeeeccccCCCCCCCCHHHHHH----HHHhcCchH------------HHHHHHHHHhcch
Confidence 67799998743 22233333334443 3333333 334443211 11111111 122
Q ss_pred HHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHH
Q 044798 660 LLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRA 694 (1231)
Q Consensus 660 ~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~ 694 (1231)
.++|.. .+-.....++.+.|++.|..+|+.
T Consensus 273 yiaR~L-----Sf~gvef~~~e~~l~~~~~~~Yd~ 302 (303)
T PF13872_consen 273 YIARQL-----SFEGVEFEIEEVPLTPEQIKMYDA 302 (303)
T ss_pred heeeec-----ccCCceEEEEEecCCHHHHHHhcC
Confidence 233332 244456678889999999999975
No 139
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=98.93 E-value=1.9e-08 Score=114.99 Aligned_cols=208 Identities=18% Similarity=0.242 Sum_probs=121.6
Q ss_pred eEEEEEecCCHHHHHHHHHHHhh--HHHHHHhhcCcc---------------hhHHHHHHHHHhCChhhhhhhhhcCCCC
Q 044798 676 TEHVLFCSLTEEQRAVYRAFLAS--SEVEQILDGSRN---------------SLYGIDVMRKICNHPDLLEREQSCQIPD 738 (1231)
Q Consensus 676 ~e~vv~~~Lt~~Qr~lY~~~l~s--~~~~~il~~~~~---------------~l~~i~~LRkicnHPdLl~~~~~~~~~d 738 (1231)
.++.+-++|+..|+++|+.++.. ..+...+++... .-..+..++.+|+||+|+..........
T Consensus 4 ~~y~lP~pmt~~QKdl~e~iislh~~~il~~~~~~~~~~~i~~~~~~~~~~~~~~~~~nl~~V~~HP~LlvdH~mPk~ll 83 (297)
T PF11496_consen 4 GEYYLPTPMTSFQKDLYEQIISLHYSDILKFCETNDSSESIDSLLDESLVQSMELLIENLRLVANHPSLLVDHYMPKQLL 83 (297)
T ss_dssp SEEEEEE---HHHHHHHHHHHHHTHHHHHHHHHSTTT--HHHH-------HHHHHHHHHHHHHHH-GGGT--TT--S-S-
T ss_pred ceEEEecCccHHHHHHHHHHHHHHHHHHHHHHcccCccccccchhhhhhHHHHHHHHHHHHHhccCccccccccCccccc
Confidence 35678889999999999988653 222222322211 1123567999999999964322111111
Q ss_pred CC-----CCCcchHHHHHHHHHHHH-----HhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHH---
Q 044798 739 YG-----NPERSEKMKVVAQVLKVW-----KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALI--- 805 (1231)
Q Consensus 739 ~~-----~~~~S~Kl~~L~eLLk~~-----~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iI--- 805 (1231)
.. ....|+|+++|-.+|..+ ...+.++||.++...++|+||.+|.-+++.|-|++|..-..+....-
T Consensus 84 ~~e~~~~~~~tS~KF~~L~~Li~~li~~~~~~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~ 163 (297)
T PF11496_consen 84 LSEPAEWLAYTSGKFQFLNDLIDSLIDRDRREYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNG 163 (297)
T ss_dssp STTHHHHHHHT-HHHHHHHHHHHHH-----TTSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S----
T ss_pred cchHHHHHHHcCchHHHHHHHHHHHHhhhcccCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCccc
Confidence 11 124699999999999999 66688999999999999999999999999999999986544433222
Q ss_pred ---------HHHh--CCCCceEEEEecccccc----ccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEE
Q 044798 806 ---------DEYN--NSSDVFIFILTTKVGGL----GTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLI 870 (1231)
Q Consensus 806 ---------d~Fn--~d~~i~VfLlSTkvGg~----GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLi 870 (1231)
.... ....+.++|++|+-... .++-...+.||-||+.+++....-..-|...-.+ +.+-|+||+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-~~~PiirLv 242 (297)
T PF11496_consen 164 NTESNSSNNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-RLCPIIRLV 242 (297)
T ss_dssp ------------------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------S--EEEEE
T ss_pred ccccccccccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-CCCcEEEEe
Confidence 0111 12357888888765544 2334567899999999999876544444433223 789999999
Q ss_pred eCCCHHHHHHHHHH
Q 044798 871 TRGTIEEKVYHRQI 884 (1231)
Q Consensus 871 t~gTIEEkIy~rQ~ 884 (1231)
..+|+|.-+.....
T Consensus 243 ~~nSiEHi~L~~~~ 256 (297)
T PF11496_consen 243 PSNSIEHIELCFPK 256 (297)
T ss_dssp ETTSHHHHHHHHTT
T ss_pred eCCCHHHHHHHccC
Confidence 99999987766554
No 140
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.72 E-value=7.1e-06 Score=102.31 Aligned_cols=86 Identities=15% Similarity=0.101 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHc-----CCCeEE
Q 044798 406 QKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWY-----PSFHVE 479 (1231)
Q Consensus 406 QkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~-----p~lrV~ 479 (1231)
|.+-+.++++.+..+...|+-..+|+|||+..+..+.........+++||++|+ .|..|+.+++.... .++++.
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~ 81 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAG 81 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEE
Confidence 778888888888788888888999999999877665444333335799999996 77889888877554 256777
Q ss_pred EEecccchhhhh
Q 044798 480 LLHDSAQDLGFR 491 (1231)
Q Consensus 480 il~gs~~~~~~~ 491 (1231)
++.|..++.-..
T Consensus 82 ~lkGr~nYlCl~ 93 (636)
T TIGR03117 82 FFPGSQEFVSPG 93 (636)
T ss_pred EEECCcccccHH
Confidence 777776654433
No 141
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.72 E-value=5.7e-07 Score=114.76 Aligned_cols=94 Identities=17% Similarity=0.109 Sum_probs=63.4
Q ss_pred CCCEEEeCHHHHHHHH--hhhhcCCccEEEEeCCcccCCcchHHHHHHHhc----ccccEEEecccCccC--ChHHHHHh
Q 044798 535 ESGLLITTYEQLRLLG--EKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQL----QTVHRIIMTGAPIQN--KLSELWSL 606 (1231)
Q Consensus 535 ~~~VvItTYe~Lr~~~--~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L----~t~~RllLTGTPiqN--nl~EL~SL 606 (1231)
.++|++.|...+..+. ..+....+..+|+||||++....+..+ .++.+ +..+..++|+.|-.. ....+-.+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaF-I~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~v 85 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAF-ILRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETK 85 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHH-HHHHHHHhCCCcceEEecCCCcccccchHHHHHH
Confidence 4589999999887654 234445678999999999976554433 33434 344568899999763 45666677
Q ss_pred hhhhcCCCCCChhHHHHhhcccc
Q 044798 607 FDFVFPGKLGVLPVFEAEFAVPI 629 (1231)
Q Consensus 607 l~FL~P~~lg~~~~F~~~f~~pI 629 (1231)
+.-|+...+.-++.|.......+
T Consensus 86 mk~L~i~~v~l~prf~~~V~~~l 108 (814)
T TIGR00596 86 MRNLFLRHVYLWPRFHVEVASSL 108 (814)
T ss_pred HHHhCcCeEEEeCCCchHHHHHh
Confidence 77777776666666665554444
No 142
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=98.69 E-value=5.6e-07 Score=115.25 Aligned_cols=145 Identities=17% Similarity=0.132 Sum_probs=98.6
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC-CcchHHHHHHHHHHcCCC--
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP-VTLLRQWKREAEKWYPSF-- 476 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P-~sLl~QW~~E~~kw~p~l-- 476 (1231)
-.|-|+|++++.-+ ..+.+.+++..+|.|||+.+-.+++..+..+ .+++...| +.|.+|=.++|..-+.+.
T Consensus 118 F~LD~fQ~~a~~~L----er~esVlV~ApTssGKTvVaeyAi~~al~~~--qrviYTsPIKALsNQKyrdl~~~fgdv~~ 191 (1041)
T COG4581 118 FELDPFQQEAIAIL----ERGESVLVCAPTSSGKTVVAEYAIALALRDG--QRVIYTSPIKALSNQKYRDLLAKFGDVAD 191 (1041)
T ss_pred CCcCHHHHHHHHHH----hCCCcEEEEccCCCCcchHHHHHHHHHHHcC--CceEeccchhhhhhhHHHHHHHHhhhhhh
Confidence 46889999999877 6788999999999999999876665544433 45999999 577788778887766533
Q ss_pred eEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--hh
Q 044798 477 HVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK--LL 554 (1231)
Q Consensus 477 rV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~--L~ 554 (1231)
.|-++.|... +.....++|+|-+.||...-. -.
T Consensus 192 ~vGL~TGDv~---------------------------------------------IN~~A~clvMTTEILRnMlyrg~~~ 226 (1041)
T COG4581 192 MVGLMTGDVS---------------------------------------------INPDAPCLVMTTEILRNMLYRGSES 226 (1041)
T ss_pred hccceeccee---------------------------------------------eCCCCceEEeeHHHHHHHhccCccc
Confidence 2223332211 223456888888988875421 22
Q ss_pred cCCccEEEEeCCcccCCcchH-HHHHHH-hcccc-cEEEecccC
Q 044798 555 DVEWGYAVLDEGHRIRNPNAE-ISLVCK-QLQTV-HRIIMTGAP 595 (1231)
Q Consensus 555 ~~~wd~VILDEAH~IKN~~Sk-~skalk-~L~t~-~RllLTGTP 595 (1231)
......||+||.|.|....-. .+.-+- .+... .-++||||-
T Consensus 227 ~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~v~LSATv 270 (1041)
T COG4581 227 LRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRFVFLSATV 270 (1041)
T ss_pred ccccceEEEEeeeeccccccchhHHHHHHhcCCCCcEEEEeCCC
Confidence 235678999999999876544 333333 33333 557899993
No 143
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.68 E-value=5.8e-06 Score=104.45 Aligned_cols=85 Identities=14% Similarity=0.227 Sum_probs=67.4
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCC-CHHHHHHHHHHHhCCCCceEEEEec
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLT-PVKQRMALIDEYNNSSDVFIFILTT 821 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGst-s~~eRq~iId~Fn~d~~i~VfLlST 821 (1231)
....|..++.+-+......|..|||-|.+...-+.|..+|...|+++..++... ....=..+|.+= + ....+-++|
T Consensus 405 t~~~K~~AI~~ei~~~~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIA~A--G-~~G~VTIAT 481 (870)
T CHL00122 405 DELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPENVRRESEIVAQA--G-RKGSITIAT 481 (870)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCccchhHHHHHHhc--C-CCCcEEEec
Confidence 445688888888888889999999999999999999999999999999999974 333444566552 3 223446789
Q ss_pred cccccccCC
Q 044798 822 KVGGLGTNL 830 (1231)
Q Consensus 822 kvGg~GLNL 830 (1231)
..+|+|.|+
T Consensus 482 NMAGRGTDI 490 (870)
T CHL00122 482 NMAGRGTDI 490 (870)
T ss_pred cccCCCcCe
Confidence 999999775
No 144
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=98.67 E-value=1.7e-06 Score=107.35 Aligned_cols=140 Identities=19% Similarity=0.204 Sum_probs=94.4
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC-CcchHHHHHHHHHHcCCCeEE
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP-VTLLRQWKREAEKWYPSFHVE 479 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P-~sLl~QW~~E~~kw~p~lrV~ 479 (1231)
.|-+||+++|.-| ..+...++|.-+-.|||+.|=..++... ....+++.-.| +.|-+|=.++|+.-|.+..
T Consensus 297 elD~FQk~Ai~~l----erg~SVFVAAHTSAGKTvVAEYAialaq--~h~TR~iYTSPIKALSNQKfRDFk~tF~Dvg-- 368 (1248)
T KOG0947|consen 297 ELDTFQKEAIYHL----ERGDSVFVAAHTSAGKTVVAEYAIALAQ--KHMTRTIYTSPIKALSNQKFRDFKETFGDVG-- 368 (1248)
T ss_pred CccHHHHHHHHHH----HcCCeEEEEecCCCCcchHHHHHHHHHH--hhccceEecchhhhhccchHHHHHHhccccc--
Confidence 4678999999766 5778899999999999998643333221 22467888899 5666677788888776544
Q ss_pred EEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHh----hhhc
Q 044798 480 LLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGE----KLLD 555 (1231)
Q Consensus 480 il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~----~L~~ 555 (1231)
++.|... +.....++|+|-+.||...- .+.
T Consensus 369 LlTGDvq---------------------------------------------inPeAsCLIMTTEILRsMLYrgadliR- 402 (1248)
T KOG0947|consen 369 LLTGDVQ---------------------------------------------INPEASCLIMTTEILRSMLYRGADLIR- 402 (1248)
T ss_pred eeeccee---------------------------------------------eCCCcceEeehHHHHHHHHhcccchhh-
Confidence 4444321 22345799999999987542 232
Q ss_pred CCccEEEEeCCcccCCcch-HHHHHHHhcccc--cEEEecccC
Q 044798 556 VEWGYAVLDEGHRIRNPNA-EISLVCKQLQTV--HRIIMTGAP 595 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN~~S-k~skalk~L~t~--~RllLTGTP 595 (1231)
+..+||+||.|.|-+-.- -++.-+--+-.. .-|+||||-
T Consensus 403 -DvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~~IlLSATV 444 (1248)
T KOG0947|consen 403 -DVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVNFILLSATV 444 (1248)
T ss_pred -ccceEEEeeeeecccccccccceeeeeeccccceEEEEeccC
Confidence 467899999999976442 234333333233 337899994
No 145
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.63 E-value=2e-06 Score=108.03 Aligned_cols=371 Identities=18% Similarity=0.220 Sum_probs=203.9
Q ss_pred hhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC-CcchHHHHHHHHHHcCCCe
Q 044798 399 FNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP-VTLLRQWKREAEKWYPSFH 477 (1231)
Q Consensus 399 ~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P-~sLl~QW~~E~~kw~p~lr 477 (1231)
+..|-+-|..++.-+........-.+|.--+|+|||-.-+-++......| +.+||++| -.+..|-...|+..++ .+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~G--kqvLvLVPEI~Ltpq~~~rf~~rFg-~~ 272 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQG--KQVLVLVPEIALTPQLLARFKARFG-AK 272 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcC--CEEEEEeccccchHHHHHHHHHHhC-CC
Confidence 45788999999998876542345678899999999988777777776655 79999999 4899999999998886 88
Q ss_pred EEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcCC
Q 044798 478 VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVE 557 (1231)
Q Consensus 478 V~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~~ 557 (1231)
|.++|+.-+... ....| .++......|||.|...+-.-. .+
T Consensus 273 v~vlHS~Ls~~e------------------------------r~~~W----~~~~~G~~~vVIGtRSAlF~Pf-----~~ 313 (730)
T COG1198 273 VAVLHSGLSPGE------------------------------RYRVW----RRARRGEARVVIGTRSALFLPF-----KN 313 (730)
T ss_pred hhhhcccCChHH------------------------------HHHHH----HHHhcCCceEEEEechhhcCch-----hh
Confidence 888887643211 11223 2344566789999988773322 24
Q ss_pred ccEEEEeCCccc--CCcchH------HHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccc-
Q 044798 558 WGYAVLDEGHRI--RNPNAE------ISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVP- 628 (1231)
Q Consensus 558 wd~VILDEAH~I--KN~~Sk------~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~p- 628 (1231)
..+||+||=|.- |..+.. ++...........++-|+||-- +-++.. . -+.+. +-.+.+++...
T Consensus 314 LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPSL---ES~~~~---~-~g~y~-~~~L~~R~~~a~ 385 (730)
T COG1198 314 LGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPSL---ESYANA---E-SGKYK-LLRLTNRAGRAR 385 (730)
T ss_pred ccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCH---HHHHhh---h-cCceE-EEEccccccccC
Confidence 679999999964 443322 2222333344556778999942 222221 0 01000 00011111100
Q ss_pred cccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcC
Q 044798 629 ITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGS 708 (1231)
Q Consensus 629 I~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~ 708 (1231)
.......+........+ ..+++.+++.++.-+. .+...++|+. .
T Consensus 386 ~p~v~iiDmr~e~~~~~--------~~lS~~Ll~~i~~~l~----~geQ~llfln------------------------R 429 (730)
T COG1198 386 LPRVEIIDMRKEPLETG--------RSLSPALLEAIRKTLE----RGEQVLLFLN------------------------R 429 (730)
T ss_pred CCcceEEeccccccccC--------ccCCHHHHHHHHHHHh----cCCeEEEEEc------------------------c
Confidence 00000000000000000 0022222222222221 1111122211 0
Q ss_pred cchhHHHHHHHHHhCChhhhh------------hhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHH
Q 044798 709 RNSLYGIDVMRKICNHPDLLE------------REQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLD 776 (1231)
Q Consensus 709 ~~~l~~i~~LRkicnHPdLl~------------~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~Ld 776 (1231)
+... -..+..-|.|..-.. ....|+.+.+... +-..|-+.|...|+++-. =.+
T Consensus 430 RGys--~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~-----------~p~~Cp~Cgs~~L~~~G~--Gte 494 (730)
T COG1198 430 RGYA--PLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEP-----------IPQSCPECGSEHLRAVGP--GTE 494 (730)
T ss_pred CCcc--ceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCC-----------CCCCCCCCCCCeeEEecc--cHH
Confidence 0000 011233343321111 1112222222110 011223445556666432 124
Q ss_pred HHHHHHHHc--CCcEEEEeCCCCHHH--HHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCC---Cc----
Q 044798 777 ILESFLIAS--GYEYRRMDGLTPVKQ--RMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDW---NP---- 845 (1231)
Q Consensus 777 iLe~~L~~~--Gi~~~rIdGsts~~e--Rq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~W---NP---- 845 (1231)
.|++.|... +.++.+||++++... -..+++.|.++. + -||+-|...+-|+|+++...|.++|.|- +|
T Consensus 495 rieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge-~-dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA 572 (730)
T COG1198 495 RIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGE-A-DILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRA 572 (730)
T ss_pred HHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCC-C-CeeecchhhhcCCCcccceEEEEEechhhhcCCCcch
Confidence 455555443 789999999986543 467899999984 4 4578899999999999999998877553 22
Q ss_pred -----chHHHHHHhHHhhCCcccEEEEEEEeC
Q 044798 846 -----STDVQARERAWRIGQKQDVTVYRLITR 872 (1231)
Q Consensus 846 -----s~d~QAigRa~RiGQkk~V~VYRLit~ 872 (1231)
..+.|.-||++|-+-.-.|.|=-....
T Consensus 573 ~Er~fqll~QvaGRAgR~~~~G~VvIQT~~P~ 604 (730)
T COG1198 573 SERTFQLLMQVAGRAGRAGKPGEVVIQTYNPD 604 (730)
T ss_pred HHHHHHHHHHHHhhhccCCCCCeEEEEeCCCC
Confidence 356799999999876666665444443
No 146
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.63 E-value=7.6e-06 Score=104.64 Aligned_cols=71 Identities=23% Similarity=0.181 Sum_probs=57.0
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhc-CCCCcEEEEeCC-cchHHHHHHHHH
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS-NMYKPSIVVCPV-TLLRQWKREAEK 471 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s-~~~kpvLIV~P~-sLl~QW~~E~~k 471 (1231)
.+||.|++-..-++.....+..+++-..+|+|||+.+|+...+.... +...++++.+.+ +.+.|-.+|+++
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 47999999999999998899999999999999999988776665442 223445555554 778899999998
No 147
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.62 E-value=2.5e-06 Score=103.65 Aligned_cols=253 Identities=23% Similarity=0.272 Sum_probs=138.6
Q ss_pred CCCcccccCCcccChhhhhhchHHHHHHHHHHHHHHcC------CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEE
Q 044798 382 EPPFVTLEGGLKIPESIFNNLFDYQKVGVQWLWELHCQ------RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIV 455 (1231)
Q Consensus 382 ~~~~~~~~~~~~iP~~i~~~L~pyQkegV~wL~el~~~------~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLI 455 (1231)
+||++. -.+.+|..-...|-.-|+++|.|..+.+.. ..|.+|+|..|.||-.++..+|..-+..+. ++.|.
T Consensus 247 ~ppdi~--YqlalP~i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGR-KrAlW 323 (1300)
T KOG1513|consen 247 EPPDIT--YQLALPSIDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGR-KRALW 323 (1300)
T ss_pred CCCCce--EEEecccCcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhccc-ceeEE
Confidence 444442 345566655667899999999998876542 357899999999997776666655554554 45555
Q ss_pred Ee-CCcchHHHHHHHHHHc-CCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhc
Q 044798 456 VC-PVTLLRQWKREAEKWY-PSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLR 533 (1231)
Q Consensus 456 V~-P~sLl~QW~~E~~kw~-p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~ 533 (1231)
+. ..-|-..-.+.+.... +.+.|..+..- .|.......+. .
T Consensus 324 ~SVSsDLKfDAERDL~DigA~~I~V~alnK~--------------------------KYakIss~en~-----------n 366 (1300)
T KOG1513|consen 324 FSVSSDLKFDAERDLRDIGATGIAVHALNKF--------------------------KYAKISSKENT-----------N 366 (1300)
T ss_pred EEeccccccchhhchhhcCCCCccceehhhc--------------------------ccccccccccC-----------C
Confidence 44 4455555556665543 33333332210 01111111110 1
Q ss_pred CCCCEEEeCHHHHHH--------HH---hhhhc---CCc-cEEEEeCCcccCC-------cchHHHHHHHhc----cccc
Q 044798 534 SESGLLITTYEQLRL--------LG---EKLLD---VEW-GYAVLDEGHRIRN-------PNAEISLVCKQL----QTVH 587 (1231)
Q Consensus 534 ~~~~VvItTYe~Lr~--------~~---~~L~~---~~w-d~VILDEAH~IKN-------~~Sk~skalk~L----~t~~ 587 (1231)
...+|+.+||..|.- +. ..|.. ..| .+||+||+|+.|| ..+++.+++..| ...+
T Consensus 367 ~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQk~LP~AR 446 (1300)
T KOG1513|consen 367 TKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQKKLPNAR 446 (1300)
T ss_pred ccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcccccccCCCcCcccHhHHHHHHhCCCce
Confidence 223799999998832 11 11221 123 4899999999999 334555555444 5556
Q ss_pred EEEecccCccCChHHHHHhhhhhcCCCCCC---hhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHH
Q 044798 588 RIIMTGAPIQNKLSELWSLFDFVFPGKLGV---LPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRM 664 (1231)
Q Consensus 588 RllLTGTPiqNnl~EL~SLl~FL~P~~lg~---~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRt 664 (1231)
.+..|+|-. .|--+|..+++-|.||. ++.|.+. ...+...|.... .+.... .++-.-|+-|.
T Consensus 447 VVYASATGA----sEPrNMaYM~RLGlWGegtaf~eF~eF-i~AvEkRGvGAM-EIVAMD--------MK~rGmYiARQ- 511 (1300)
T KOG1513|consen 447 VVYASATGA----SEPRNMAYMVRLGLWGEGTAFPEFEEF-IHAVEKRGVGAM-EIVAMD--------MKLRGMYIARQ- 511 (1300)
T ss_pred EEEeeccCC----CCcchhhhhhhhccccCCCcCccHHHH-HHHHHhcCCcee-eeeehh--------hhhhhhhhhhh-
Confidence 677888853 34455666677777763 4444442 333333332211 110000 01111122221
Q ss_pred HHHHhhcCCCceEEEEEecCCHHHHHHHHH
Q 044798 665 KADVNAQLPKKTEHVLFCSLTEEQRAVYRA 694 (1231)
Q Consensus 665 K~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~ 694 (1231)
..+-.....+--++|+++-+.+|+.
T Consensus 512 -----LSFkgVsFrieEv~ls~eF~k~Yn~ 536 (1300)
T KOG1513|consen 512 -----LSFKGVSFRIEEVPLSKEFRKVYNR 536 (1300)
T ss_pred -----ccccCceEEEEecccCHHHHHHHHH
Confidence 1233445567778999999999975
No 148
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.60 E-value=6.6e-06 Score=103.86 Aligned_cols=86 Identities=17% Similarity=0.252 Sum_probs=68.4
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCC-CCHHHHHHHHHHHhCCCCceEEEEec
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGL-TPVKQRMALIDEYNNSSDVFIFILTT 821 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGs-ts~~eRq~iId~Fn~d~~i~VfLlST 821 (1231)
....|..++.+-+..+.+.|..|||-|.+...-+.|..+|...|+++..++.. ...+.-..+|.+= + ....+-++|
T Consensus 420 t~~~K~~Ai~~ei~~~~~~GrPVLIgT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~~~EA~IIa~A--G-~~GaVTIAT 496 (939)
T PRK12902 420 TEIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLQEQGIPHNLLNAKPENVEREAEIVAQA--G-RKGAVTIAT 496 (939)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEeeCCHHHHHHHHHHHHHcCCchheeeCCCcchHhHHHHHHhc--C-CCCcEEEec
Confidence 45689999998888888999999999999999999999999999999999997 3334444566552 2 223446789
Q ss_pred cccccccCCC
Q 044798 822 KVGGLGTNLT 831 (1231)
Q Consensus 822 kvGg~GLNLt 831 (1231)
..+|+|-++.
T Consensus 497 NMAGRGTDIk 506 (939)
T PRK12902 497 NMAGRGTDII 506 (939)
T ss_pred cCCCCCcCEe
Confidence 9999997753
No 149
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.55 E-value=1.9e-05 Score=100.20 Aligned_cols=81 Identities=16% Similarity=0.183 Sum_probs=63.3
Q ss_pred HhcCCeEEEEeccHHHHHHHHHHHHHcCCc-EEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCC--CCE
Q 044798 759 KDQGHRVLLFAQTQQMLDILESFLIASGYE-YRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTG--ANR 835 (1231)
Q Consensus 759 ~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~-~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~--Anr 835 (1231)
...+.++|||..+..++..+...|...... .+...|..+ +..+++.|....+. .|++.+....+|||+.+ ...
T Consensus 476 ~~~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~---~~~~l~~f~~~~~~-~~lv~~gsf~EGVD~~g~~l~~ 551 (654)
T COG1199 476 KASPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDE---REELLEKFKASGEG-LILVGGGSFWEGVDFPGDALRL 551 (654)
T ss_pred hhcCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCc---HHHHHHHHHHhcCC-eEEEeeccccCcccCCCCCeeE
Confidence 344559999999999999999999877553 455666554 44899999986544 78889999999999986 578
Q ss_pred EEEcCCCC
Q 044798 836 VIIFDPDW 843 (1231)
Q Consensus 836 VIi~Dp~W 843 (1231)
|||.-.||
T Consensus 552 vvI~~lPf 559 (654)
T COG1199 552 VVIVGLPF 559 (654)
T ss_pred EEEEecCC
Confidence 88887766
No 150
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.55 E-value=4e-05 Score=100.72 Aligned_cols=89 Identities=16% Similarity=0.214 Sum_probs=61.8
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchH-H-HHHH---HHHHcC-
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLR-Q-WKRE---AEKWYP- 474 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~-Q-W~~E---~~kw~p- 474 (1231)
..||-|.+-...+.+....+..+++-..+|+|||+.-+..+.... ....++++|-+++..+. | +..+ +.+.++
T Consensus 257 e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a-~~~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~~~~~ 335 (928)
T PRK08074 257 EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFA-KKKEEPVVISTYTIQLQQQLLEKDIPLLQKIFPF 335 (928)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHh-hccCCeEEEEcCCHHHHHHHHHhhHHHHHHHcCC
Confidence 468999998888888777777788888999999988654443222 22347888888875544 4 3333 444454
Q ss_pred CCeEEEEecccchhhh
Q 044798 475 SFHVELLHDSAQDLGF 490 (1231)
Q Consensus 475 ~lrV~il~gs~~~~~~ 490 (1231)
++++.++.|...+.-.
T Consensus 336 ~~~~~~lKGr~nYlcl 351 (928)
T PRK08074 336 PVEAALLKGRSHYLCL 351 (928)
T ss_pred CceEEEEEcccccccH
Confidence 5788888877765433
No 151
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.52 E-value=7.4e-06 Score=104.34 Aligned_cols=120 Identities=20% Similarity=0.263 Sum_probs=97.4
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccc
Q 044798 744 RSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKV 823 (1231)
Q Consensus 744 ~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkv 823 (1231)
...|..++++-+..+...|..|||-+.+...-++|..+|...|+++-.|+......+ ..+|.+=-. .-.+-|+|..
T Consensus 610 ~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~E-AeIVA~AG~---~GaVTIATNM 685 (1112)
T PRK12901 610 KREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKE-AEIVAEAGQ---PGTVTIATNM 685 (1112)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhH-HHHHHhcCC---CCcEEEeccC
Confidence 467899999999999999999999999999999999999999999988877654222 234443222 2334678999
Q ss_pred cccccCCC--------CCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEE
Q 044798 824 GGLGTNLT--------GANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVY 867 (1231)
Q Consensus 824 Gg~GLNLt--------~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VY 867 (1231)
+|+|.++. +-=+||.-..+-+...+.|.+||++|.|..-....|
T Consensus 686 AGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~ 737 (1112)
T PRK12901 686 AGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFY 737 (1112)
T ss_pred cCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEE
Confidence 99999976 567899999999999999999999999987664444
No 152
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.44 E-value=5.1e-05 Score=98.26 Aligned_cols=92 Identities=12% Similarity=0.066 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecccccccc
Q 044798 749 KVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGT 828 (1231)
Q Consensus 749 ~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GL 828 (1231)
..+.+.|..+...+.++||+..+..++..+...|....+.. ...|... .|..++++|+.++ .-+|+.|....+|+
T Consensus 634 ~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~--~~vLlG~~sFwEGV 708 (820)
T PRK07246 634 EEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGE--QQILLGLGSFWEGV 708 (820)
T ss_pred HHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCC--CeEEEecchhhCCC
Confidence 34555554444556789998888899998888887665544 5666432 3567999999854 34567789999999
Q ss_pred CCCC--CCEEEEcCCC-CCc
Q 044798 829 NLTG--ANRVIIFDPD-WNP 845 (1231)
Q Consensus 829 NLt~--AnrVIi~Dp~-WNP 845 (1231)
|+++ +..|||.-.| .+|
T Consensus 709 D~p~~~~~~viI~kLPF~~P 728 (820)
T PRK07246 709 DFVQADRMIEVITRLPFDNP 728 (820)
T ss_pred CCCCCCeEEEEEecCCCCCC
Confidence 9973 5566776644 445
No 153
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.39 E-value=0.00017 Score=92.20 Aligned_cols=92 Identities=14% Similarity=0.172 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhCC--CCceEEEEecccc
Q 044798 748 MKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS-GYEYRRMDGLTPVKQRMALIDEYNNS--SDVFIFILTTKVG 824 (1231)
Q Consensus 748 l~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~-Gi~~~rIdGsts~~eRq~iId~Fn~d--~~i~VfLlSTkvG 824 (1231)
...+.+.|..+...+..+|||..+..+++.+...|... ++. +.+.|. ..|..+++.|... ..-..+|+.+...
T Consensus 520 ~~~~~~~i~~l~~~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf 595 (697)
T PRK11747 520 TAEMAEFLPELLEKHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSF 595 (697)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccc
Confidence 34455555444335556888888888888888888643 343 444664 3578899888642 0113346667888
Q ss_pred ccccCCCC--CCEEEEcCCCC
Q 044798 825 GLGTNLTG--ANRVIIFDPDW 843 (1231)
Q Consensus 825 g~GLNLt~--AnrVIi~Dp~W 843 (1231)
.+|||+++ +..|||.-.|+
T Consensus 596 ~EGVD~pGd~l~~vII~kLPF 616 (697)
T PRK11747 596 AEGLDLPGDYLTQVIITKIPF 616 (697)
T ss_pred cccccCCCCceEEEEEEcCCC
Confidence 99999985 78899987665
No 154
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.38 E-value=3.2e-05 Score=101.36 Aligned_cols=139 Identities=21% Similarity=0.242 Sum_probs=89.8
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeEEEEecccchhhhhhhhccC
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKS 497 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV~il~gs~~~~~~~~kr~~~ 497 (1231)
.+.||++-|-.|+|||++++-+...+........++||+-. -|-.|-.++|..+........ . ..+.
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~-~-~~s~---------- 339 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP-K-AEST---------- 339 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc-c-ccCH----------
Confidence 34689999999999999987666555555555667788885 666788999998754332211 1 1000
Q ss_pred CCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhc-CCCCEEEeCHHHHHHHHhh----hhcCCccEEEEeCCcccCCc
Q 044798 498 SDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLR-SESGLLITTYEQLRLLGEK----LLDVEWGYAVLDEGHRIRNP 572 (1231)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~-~~~~VvItTYe~Lr~~~~~----L~~~~wd~VILDEAH~IKN~ 572 (1231)
+ .+.+.+. ...+|+|||-+.|...... ......-+||+||||+--..
T Consensus 340 ---------------------------~-~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G 391 (962)
T COG0610 340 ---------------------------S-ELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG 391 (962)
T ss_pred ---------------------------H-HHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc
Confidence 0 1122222 3458999999999765533 23446678999999986432
Q ss_pred chHHHHHHH-hcccccEEEecccCccCC
Q 044798 573 NAEISLVCK-QLQTVHRIIMTGAPIQNK 599 (1231)
Q Consensus 573 ~Sk~skalk-~L~t~~RllLTGTPiqNn 599 (1231)
...+.++ .+....-+..||||+.-.
T Consensus 392 --~~~~~~~~~~~~a~~~gFTGTPi~~~ 417 (962)
T COG0610 392 --ELAKLLKKALKKAIFIGFTGTPIFKE 417 (962)
T ss_pred --HHHHHHHHHhccceEEEeeCCccccc
Confidence 2333333 335566688999998643
No 155
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=98.36 E-value=2.4e-05 Score=95.31 Aligned_cols=108 Identities=21% Similarity=0.330 Sum_probs=83.1
Q ss_pred CeEEEEeccHHHHHHHHHHHHHc----CC----cEEEEeCCCCHHHHHHHHHHHhCCC-CceEEEEeccccccccCCCCC
Q 044798 763 HRVLLFAQTQQMLDILESFLIAS----GY----EYRRMDGLTPVKQRMALIDEYNNSS-DVFIFILTTKVGGLGTNLTGA 833 (1231)
Q Consensus 763 ~KVLVFSQ~~~~LdiLe~~L~~~----Gi----~~~rIdGsts~~eRq~iId~Fn~d~-~i~VfLlSTkvGg~GLNLt~A 833 (1231)
.-+|||=......+.....|... +- -++.++|.++.++..++ |...+ +.+-++++|+.+...|++.+.
T Consensus 259 GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rv---F~p~p~g~RKvIlsTNIAETSlTI~GI 335 (674)
T KOG0922|consen 259 GDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRV---FDPAPPGKRKVILSTNIAETSLTIDGI 335 (674)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhcc---ccCCCCCcceEEEEcceeeeeEEecce
Confidence 38999999888888877777654 21 25779999998876554 65543 678889999999999999998
Q ss_pred CEEEEcCC------CCCc-----------chHHHHHHhHHhhCCcccEEEEEEEeCCCH
Q 044798 834 NRVIIFDP------DWNP-----------STDVQARERAWRIGQKQDVTVYRLITRGTI 875 (1231)
Q Consensus 834 nrVIi~Dp------~WNP-----------s~d~QAigRa~RiGQkk~V~VYRLit~gTI 875 (1231)
-.|| |+ .||| ..-.||.-|++|.|.+.+..+|||.++.-.
T Consensus 336 ~YVV--DsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~ 392 (674)
T KOG0922|consen 336 RYVV--DSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAY 392 (674)
T ss_pred EEEE--cCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHH
Confidence 8886 32 2344 244578888888888999999999997755
No 156
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=98.33 E-value=5.2e-05 Score=95.28 Aligned_cols=348 Identities=20% Similarity=0.217 Sum_probs=175.3
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHH-HHHHHc--CCCe
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKR-EAEKWY--PSFH 477 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~-E~~kw~--p~lr 477 (1231)
.||.+|.+|+.-- ....+++.|.+.+++-|||+.+=.++..... ...+.+|.|.|-..+.|=+. ++..+. -+++
T Consensus 223 ~~fewq~ecls~~--~~~e~~nliys~Pts~gktlvaeilml~~~l-~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ 299 (1008)
T KOG0950|consen 223 KLFEWQAECLSLP--RLLERKNLIYSLPTSAGKTLVAEILMLREVL-CRRRNVLLILPYVSIVQEKISALSPFSIDLGFP 299 (1008)
T ss_pred HHHHHHHHHhcch--hhhcccceEEeCCCccchHHHHHHHHHHHHH-HHhhceeEecceeehhHHHHhhhhhhccccCCc
Confidence 5777787777422 2236788999999999999986433332211 12367889999665555333 333332 1344
Q ss_pred EEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcC-
Q 044798 478 VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDV- 556 (1231)
Q Consensus 478 V~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~- 556 (1231)
|..|.|.-. ..+ ....-.|.|+|-+.-..+.+.|...
T Consensus 300 ve~y~g~~~-------------------------------p~~-----------~~k~~sv~i~tiEkanslin~lie~g 337 (1008)
T KOG0950|consen 300 VEEYAGRFP-------------------------------PEK-----------RRKRESVAIATIEKANSLINSLIEQG 337 (1008)
T ss_pred chhhcccCC-------------------------------CCC-----------cccceeeeeeehHhhHhHHHHHHhcC
Confidence 444442111 000 0122368899998887766655432
Q ss_pred ---CccEEEEeCCcccCCcc--hHH----HHHHHhcccc--cEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhh
Q 044798 557 ---EWGYAVLDEGHRIRNPN--AEI----SLVCKQLQTV--HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEF 625 (1231)
Q Consensus 557 ---~wd~VILDEAH~IKN~~--Sk~----skalk~L~t~--~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f 625 (1231)
..++||+||-|.|-... .-. ++.+..-... ..+.||+|-..|.+-.-|-- .|+.+..+...+-+..
T Consensus 338 ~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~-A~~y~t~fRPv~L~E~-- 414 (1008)
T KOG0950|consen 338 RLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLD-AFVYTTRFRPVPLKEY-- 414 (1008)
T ss_pred CccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhh-hhheecccCcccchhc--
Confidence 35789999999996433 222 2332222222 25779999766554443332 4454443332222211
Q ss_pred ccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHH--H-----hhcCCCceEEEEEecCCHHHHHHHHHHHhh
Q 044798 626 AVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKAD--V-----NAQLPKKTEHVLFCSLTEEQRAVYRAFLAS 698 (1231)
Q Consensus 626 ~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~d--V-----~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s 698 (1231)
+..| ....+.. ....|+.+-.++..---..| . ..-+|.....++||+--..=. .|-
T Consensus 415 ---ik~G----~~i~~~~----r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce-~~a----- 477 (1008)
T KOG0950|consen 415 ---IKPG----SLIYESS----RNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCE-NVA----- 477 (1008)
T ss_pred ---cCCC----cccccch----hhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchH-HHH-----
Confidence 1111 1111110 12223333322111111011 1 112455555677776432211 111
Q ss_pred HHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHH
Q 044798 699 SEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDIL 778 (1231)
Q Consensus 699 ~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiL 778 (1231)
..-+-++|.......... --.+..+...++... .-+|.
T Consensus 478 -------------------~~~~~~vpk~~~~e~~~~---------~~~~~s~s~~lr~~~-------------~~ld~- 515 (1008)
T KOG0950|consen 478 -------------------SLIAKKVPKHIKSEKRLG---------LWELLSISNLLRRIP-------------GILDP- 515 (1008)
T ss_pred -------------------HHHHHHhhHhhhhhhhhh---------HHHHHHHHhHhhcCC-------------cccch-
Confidence 111122332221110000 000001111111100 00111
Q ss_pred HHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCC-----CcchHHHHH
Q 044798 779 ESFLIAS-GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDW-----NPSTDVQAR 852 (1231)
Q Consensus 779 e~~L~~~-Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~W-----NPs~d~QAi 852 (1231)
.|+.. -+.+...|-..+.++|.-+-..|+++ .++| |++|...+-|+||+ |.|||+=-|.. .-..|.|.+
T Consensus 516 --Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g-~i~v-l~aTSTlaaGVNLP-ArRVIiraP~~g~~~l~~~~YkQM~ 590 (1008)
T KOG0950|consen 516 --VLAKTIPYGVAYHHAGLTSEEREIIEAAFREG-NIFV-LVATSTLAAGVNLP-ARRVIIRAPYVGREFLTRLEYKQMV 590 (1008)
T ss_pred --HHheeccccceecccccccchHHHHHHHHHhc-CeEE-EEecchhhccCcCC-cceeEEeCCccccchhhhhhHHhhh
Confidence 12211 34566677788889998888899988 5666 45666699999999 67777755543 456899999
Q ss_pred HhHHhhCC
Q 044798 853 ERAWRIGQ 860 (1231)
Q Consensus 853 gRa~RiGQ 860 (1231)
||++|.|=
T Consensus 591 GRAGR~gi 598 (1008)
T KOG0950|consen 591 GRAGRTGI 598 (1008)
T ss_pred hhhhhccc
Confidence 99999873
No 157
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=98.24 E-value=1.7e-05 Score=96.65 Aligned_cols=139 Identities=19% Similarity=0.236 Sum_probs=88.3
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHH-HHHhhcCCCCcEEEEeC-CcchHHHHHHHHHHcCCCeE
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFL-GALHFSNMYKPSIVVCP-VTLLRQWKREAEKWYPSFHV 478 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L-~~L~~s~~~kpvLIV~P-~sLl~QW~~E~~kw~p~lrV 478 (1231)
.|-|||.++|.-+ ..+...++..-+-.|||+.|=-.| .+|.. ..+++.-.| +.|-+|=.+|+..=+.+ |
T Consensus 129 ~LDpFQ~~aI~Ci----dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~---kQRVIYTSPIKALSNQKYREl~~EF~D--V 199 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCI----DRGESVLVSAHTSAGKTVVAEYAIAMSLRE---KQRVIYTSPIKALSNQKYRELLEEFKD--V 199 (1041)
T ss_pred ccCchHhhhhhhh----cCCceEEEEeecCCCcchHHHHHHHHHHHh---cCeEEeeChhhhhcchhHHHHHHHhcc--c
Confidence 5889999998755 567788888889999999864333 34432 358888899 56667777787765533 2
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHH----hhhh
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLG----EKLL 554 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~----~~L~ 554 (1231)
-+..|... +......+|+|-+.||... +.+.
T Consensus 200 GLMTGDVT---------------------------------------------InP~ASCLVMTTEILRsMLYRGSEvmr 234 (1041)
T KOG0948|consen 200 GLMTGDVT---------------------------------------------INPDASCLVMTTEILRSMLYRGSEVMR 234 (1041)
T ss_pred ceeeccee---------------------------------------------eCCCCceeeeHHHHHHHHHhccchHhh
Confidence 22222110 1123468999999998654 2233
Q ss_pred cCCccEEEEeCCcccCCcchHH-H-HHHHhcc-cccEEEecccC
Q 044798 555 DVEWGYAVLDEGHRIRNPNAEI-S-LVCKQLQ-TVHRIIMTGAP 595 (1231)
Q Consensus 555 ~~~wd~VILDEAH~IKN~~Sk~-s-kalk~L~-t~~RllLTGTP 595 (1231)
....||+||.|.||+..-.+ | ..+-.+. ..+-++||||-
T Consensus 235 --EVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~VFLSATi 276 (1041)
T KOG0948|consen 235 --EVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRFVFLSATI 276 (1041)
T ss_pred --eeeeEEeeeehhccccccceeeeeeEEeccccceEEEEeccC
Confidence 45679999999999865322 1 1111222 23446789984
No 158
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.22 E-value=4.3e-05 Score=97.65 Aligned_cols=109 Identities=17% Similarity=0.247 Sum_probs=80.5
Q ss_pred CCeEEEEeccHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCc-eEEEEeccccccccCCCCCCEE
Q 044798 762 GHRVLLFAQTQQMLDILESFLIA----SGYEYRRMDGLTPVKQRMALIDEYNNSSDV-FIFILTTKVGGLGTNLTGANRV 836 (1231)
Q Consensus 762 g~KVLVFSQ~~~~LdiLe~~L~~----~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i-~VfLlSTkvGg~GLNLt~AnrV 836 (1231)
..-+|||-......+.....|.. ..+.++-++|.++.++..++ |+..+.- +-++++|+++..+|++.+...|
T Consensus 259 ~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rv---F~p~~~~~RKVVlATNIAETSLTI~gIr~V 335 (845)
T COG1643 259 SGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRV---FEPAPGGKRKVVLATNIAETSLTIPGIRYV 335 (845)
T ss_pred CCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhh---cCCCCCCcceEEEEccccccceeeCCeEEE
Confidence 45899999998888888888887 35789999999999887774 5554332 5468899999999999999888
Q ss_pred EEc----CCCCCcc--------------hHHHHHHhHHhhCCcccEEEEEEEeCCCHH
Q 044798 837 IIF----DPDWNPS--------------TDVQARERAWRIGQKQDVTVYRLITRGTIE 876 (1231)
Q Consensus 837 Ii~----Dp~WNPs--------------~d~QAigRa~RiGQkk~V~VYRLit~gTIE 876 (1231)
|=- .+-|||. .-.||.||++ .+.+=.+|||.+++..+
T Consensus 336 IDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAG---R~~pGicyRLyse~~~~ 390 (845)
T COG1643 336 IDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAG---RTGPGICYRLYSEEDFL 390 (845)
T ss_pred ecCCcccccccccccCceeeeEEEechhhhhhhccccc---cCCCceEEEecCHHHHH
Confidence 721 1233443 3335555555 47788899999986555
No 159
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.21 E-value=7.2e-05 Score=93.90 Aligned_cols=109 Identities=14% Similarity=0.187 Sum_probs=78.1
Q ss_pred HHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCC
Q 044798 751 VAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNL 830 (1231)
Q Consensus 751 L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNL 830 (1231)
...+|..-...|+++.|||.+..+.+++++++...+.+++.++|..+..+. ++-.+++|++- |.+..+||++
T Consensus 271 F~~~L~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv-------~~W~~~~VviY-T~~itvG~Sf 342 (824)
T PF02399_consen 271 FFSELLARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV-------ESWKKYDVVIY-TPVITVGLSF 342 (824)
T ss_pred HHHHHHHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc-------ccccceeEEEE-eceEEEEecc
Confidence 333444445678999999999999999999999999999999998765522 23346677655 5588889988
Q ss_pred C--CCCEEEEc--CCCCCcch--HHHHHHhHHhhCCcccEEEEE
Q 044798 831 T--GANRVIIF--DPDWNPST--DVQARERAWRIGQKQDVTVYR 868 (1231)
Q Consensus 831 t--~AnrVIi~--Dp~WNPs~--d~QAigRa~RiGQkk~V~VYR 868 (1231)
- ..+.|+.| ....-|.. ..|.+||+..+.. ++++||.
T Consensus 343 ~~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~-~ei~v~~ 385 (824)
T PF02399_consen 343 EEKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD-NEIYVYI 385 (824)
T ss_pred chhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc-CeEEEEE
Confidence 5 35666665 22333443 5799999998874 5566654
No 160
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=98.20 E-value=6.9e-05 Score=95.70 Aligned_cols=121 Identities=18% Similarity=0.304 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHhc--CCeEEEEeccHHHHHHHHHHHHHc-------CCcEEEEeCCCCHHHHHHHHHHHhCC-CCceE
Q 044798 747 KMKVVAQVLKVWKDQ--GHRVLLFAQTQQMLDILESFLIAS-------GYEYRRMDGLTPVKQRMALIDEYNNS-SDVFI 816 (1231)
Q Consensus 747 Kl~~L~eLLk~~~~~--g~KVLVFSQ~~~~LdiLe~~L~~~-------Gi~~~rIdGsts~~eRq~iId~Fn~d-~~i~V 816 (1231)
....+..++..+.+. ...+|||-.....+..+...|... .+-+..+|+.++..+.+.+ |+.. ++++-
T Consensus 396 d~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~V---F~~pp~g~RK 472 (924)
T KOG0920|consen 396 DYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAV---FKRPPKGTRK 472 (924)
T ss_pred cHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHh---cCCCCCCcch
Confidence 344555555554333 358999999888888877777642 3567889999988776655 5553 35577
Q ss_pred EEEeccccccccCCCCCCEEE--------EcCCCCCc----------chHHHHHHhHHhhCCcccEEEEEEEeCC
Q 044798 817 FILTTKVGGLGTNLTGANRVI--------IFDPDWNP----------STDVQARERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 817 fLlSTkvGg~GLNLt~AnrVI--------i~Dp~WNP----------s~d~QAigRa~RiGQkk~V~VYRLit~g 873 (1231)
+|++|..+...|++..+-+|| .|||.-|- +.-.||.||++| .++=.+|+|++..
T Consensus 473 IIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGR---v~~G~cy~L~~~~ 544 (924)
T KOG0920|consen 473 IILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGR---VRPGICYHLYTRS 544 (924)
T ss_pred hhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccC---ccCCeeEEeechh
Confidence 899999999999998877776 35554333 344588888776 5777889998765
No 161
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.07 E-value=6.9e-05 Score=94.57 Aligned_cols=114 Identities=25% Similarity=0.285 Sum_probs=88.8
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEec
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTT 821 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlST 821 (1231)
.....|..++++-+......|..|||-+.+...-+.+...|.+.||+...++-.-. .|+.-|-.+--. .-.+=++|
T Consensus 409 ~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h--~~EA~Iia~AG~--~gaVTiAT 484 (822)
T COG0653 409 KTEEEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNH--AREAEIIAQAGQ--PGAVTIAT 484 (822)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEcCcceecchhHHHHHHhcCCCceeeccccH--HHHHHHHhhcCC--CCcccccc
Confidence 34578999999999999999999999999999999999999999999988888775 344333333221 12234589
Q ss_pred cccccccCCC-CCC----------EEEEcCCCCCcchHHHHHHhHHhhC
Q 044798 822 KVGGLGTNLT-GAN----------RVIIFDPDWNPSTDVQARERAWRIG 859 (1231)
Q Consensus 822 kvGg~GLNLt-~An----------rVIi~Dp~WNPs~d~QAigRa~RiG 859 (1231)
..+|+|-++. +.+ +||--+-.=+-..+.|-+||++|.|
T Consensus 485 NMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG 533 (822)
T COG0653 485 NMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG 533 (822)
T ss_pred ccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC
Confidence 9999999986 444 4565666666667779999999999
No 162
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.04 E-value=5.2e-05 Score=97.50 Aligned_cols=193 Identities=15% Similarity=0.189 Sum_probs=118.9
Q ss_pred hHHHHHHHHHHHHHHcC----------------------------------CCcEEEEeCCCchHHHHHHHHHHHHhhcC
Q 044798 403 FDYQKVGVQWLWELHCQ----------------------------------RAGGIIGDEMGLGKTIQVLSFLGALHFSN 448 (1231)
Q Consensus 403 ~pyQkegV~wL~el~~~----------------------------------~~GgILADEMGLGKTIqaIA~L~~L~~s~ 448 (1231)
.|||..||.-+...... ..+.-+..++|+|||.+++..|..|+...
T Consensus 8 l~hQ~~av~ai~~~F~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~n~~~~M~TGtGKT~~~~~~i~~l~~~~ 87 (986)
T PRK15483 8 LPHQEQALAAILAAFTGIDIASADPNHYANPLIKLRYENGIPGRSRTRIDDKANIDIKMETGTGKTYVYTRLMYELHQKY 87 (986)
T ss_pred ChhHHHHHHHHHHHhcCCCccCCccccccCcccccchhhccccccccccCccceEEEEeCCCCCHHHHHHHHHHHHHHHc
Confidence 79999999887754211 13567899999999999999999998887
Q ss_pred CCCcEEEEeCCcchHH-HHH---------HHHHHcCCC--eEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcc
Q 044798 449 MYKPSIVVCPVTLLRQ-WKR---------EAEKWYPSF--HVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNL 516 (1231)
Q Consensus 449 ~~kpvLIV~P~sLl~Q-W~~---------E~~kw~p~l--rV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~ 516 (1231)
....+|||||...+.. ..+ .|...+++. +..+|.+..... .++.
T Consensus 88 ~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k-~gr~----------------------- 143 (986)
T PRK15483 88 GLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKK-SGRK----------------------- 143 (986)
T ss_pred CCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcccc-cccc-----------------------
Confidence 7899999999644432 222 233334333 333333221000 0000
Q ss_pred cCCCcchhhHHHHhhhcC------CCCEEEeCHHHHHHHH------hhh----hcCCcc-------EEEEeCCcccCCcc
Q 044798 517 SSRNPKKWDLLINRVLRS------ESGLLITTYEQLRLLG------EKL----LDVEWG-------YAVLDEGHRIRNPN 573 (1231)
Q Consensus 517 ~~~~~k~~~~~i~~~~~~------~~~VvItTYe~Lr~~~------~~L----~~~~wd-------~VILDEAH~IKN~~ 573 (1231)
.+...+...... ...|+|+|-++|.... +.+ ....|+ +||+||+|++.. .
T Consensus 144 ------~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~-~ 216 (986)
T PRK15483 144 ------NFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPR-D 216 (986)
T ss_pred ------cChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCc-c
Confidence 000011111111 3579999999885421 111 112333 699999999955 3
Q ss_pred hHHHHHHHhcccccEEEecccCcc-------CChH--HHHHhhhhhcCCCCCChhHHHHhhcccccc
Q 044798 574 AEISLVCKQLQTVHRIIMTGAPIQ-------NKLS--ELWSLFDFVFPGKLGVLPVFEAEFAVPITV 631 (1231)
Q Consensus 574 Sk~skalk~L~t~~RllLTGTPiq-------Nnl~--EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~ 631 (1231)
.+.+.++..++..+.+.-|||--. |... ++|+|+.- |+....|+.....-|..
T Consensus 217 ~k~~~~i~~lnpl~~lrysAT~~~~~~~~g~~~~~~~d~~NlvY~-----LdavdAyn~~LVK~I~V 278 (986)
T PRK15483 217 NKFYQAIEALKPQMIIRFGATFPDITEGKGKNKCTRKDYYNLQFD-----LNAVDSFNDGLVKGVDI 278 (986)
T ss_pred hHHHHHHHhcCcccEEEEeeecCCccccccccccccccccCceee-----cCHHHHHHhCCcceEEE
Confidence 457788999999999999999744 2222 35665554 45567777777666554
No 163
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=98.00 E-value=0.00011 Score=88.97 Aligned_cols=128 Identities=23% Similarity=0.304 Sum_probs=84.6
Q ss_pred eEEEEeccH----HHHHHHHHHHHHc------CCcEEEEeCCCCHHHHHHHHHHHhC-CCCceEEEEeccccccccCCCC
Q 044798 764 RVLLFAQTQ----QMLDILESFLIAS------GYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTG 832 (1231)
Q Consensus 764 KVLVFSQ~~----~~LdiLe~~L~~~------Gi~~~rIdGsts~~eRq~iId~Fn~-d~~i~VfLlSTkvGg~GLNLt~ 832 (1231)
-+|||-... -+.++|...|... ++.++-|...++..-..++ |+. ..+++-.+++|.++...|++.+
T Consensus 565 dilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~ki---Fq~a~~~vRK~IvATNIAETSLTi~g 641 (1042)
T KOG0924|consen 565 DILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKI---FQKAEGGVRKCIVATNIAETSLTIPG 641 (1042)
T ss_pred CEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhh---cccCCCCceeEEEeccchhhceeecc
Confidence 556664332 2344444444332 5678888888887655444 663 4467888999999999999999
Q ss_pred CCEEEEcCC----CCCc-----------chHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHH---HHHHHHHHHHHh
Q 044798 833 ANRVIIFDP----DWNP-----------STDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHR---QIYKHFLTNKIL 894 (1231)
Q Consensus 833 AnrVIi~Dp----~WNP-----------s~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~r---Q~~K~~L~n~vl 894 (1231)
...||=.-. -+|| ..-.+|--|++|.|.+.|-++|||+++.+....++.- -+...+|.|.||
T Consensus 642 I~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVL 721 (1042)
T KOG0924|consen 642 IRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVL 721 (1042)
T ss_pred eEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHH
Confidence 998873211 1344 3334566677777778899999999998877666532 244567777766
No 164
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=97.99 E-value=0.00099 Score=83.88 Aligned_cols=148 Identities=16% Similarity=0.098 Sum_probs=97.6
Q ss_pred cCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHc--CCCeEEEEecccchhhhhhhh
Q 044798 418 CQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWY--PSFHVELLHDSAQDLGFRKKR 494 (1231)
Q Consensus 418 ~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~--p~lrV~il~gs~~~~~~~~kr 494 (1231)
..+...+|...+-.|||...--++-........+-++.|+|. .++.|-..++..-+ +.+. ....
T Consensus 524 Dr~eSavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~-----rg~s-------- 590 (1330)
T KOG0949|consen 524 DRNESAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFL-----RGVS-------- 590 (1330)
T ss_pred hcccceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccc-----cchh--------
Confidence 566788999999999999888777777777777899999994 88888877776543 1111 0000
Q ss_pred ccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhc--CCCCEEEeCHHHHHHHHhh-hhc----CCccEEEEeCCc
Q 044798 495 AKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLR--SESGLLITTYEQLRLLGEK-LLD----VEWGYAVLDEGH 567 (1231)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~--~~~~VvItTYe~Lr~~~~~-L~~----~~wd~VILDEAH 567 (1231)
.|..+...+-. -.+.|+||-++.+....-. -+. -+..|||+||.|
T Consensus 591 ----------------------------l~g~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH 642 (1330)
T KOG0949|consen 591 ----------------------------LLGDLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVH 642 (1330)
T ss_pred ----------------------------hHhhhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhh
Confidence 00011111111 1458999999998664422 011 246799999999
Q ss_pred ccCCcc-hHHHHHHHhcccccEEEecccCccCChHHHHHhhh
Q 044798 568 RIRNPN-AEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFD 608 (1231)
Q Consensus 568 ~IKN~~-Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~ 608 (1231)
.|.|.. +..+.-+-.+-...-++||+|- +|+..++-.++
T Consensus 643 ~iG~~ed~l~~Eqll~li~CP~L~LSATi--gN~~l~qkWln 682 (1330)
T KOG0949|consen 643 LIGNEEDGLLWEQLLLLIPCPFLVLSATI--GNPNLFQKWLN 682 (1330)
T ss_pred hccccccchHHHHHHHhcCCCeeEEeccc--CCHHHHHHHHH
Confidence 998854 4555555556666678899994 66666655444
No 165
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=97.96 E-value=4.2e-05 Score=78.32 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=68.1
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHHcCCCeEEEEecccchhhhhhhhccCCCC
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDT 500 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw~p~lrV~il~gs~~~~~~~~kr~~~~~~ 500 (1231)
.--+|-.-+|.|||..+|.-+..-.. ....++||+.|.-++- +|+.+...+..+.+-.....
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i-~~~~rvLvL~PTRvva---~em~~aL~~~~~~~~t~~~~-------------- 66 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAI-KRRLRVLVLAPTRVVA---EEMYEALKGLPVRFHTNARM-------------- 66 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHH-HTT--EEEEESSHHHH---HHHHHHTTTSSEEEESTTSS--------------
T ss_pred ceeEEecCCCCCCcccccHHHHHHHH-HccCeEEEecccHHHH---HHHHHHHhcCCcccCceeee--------------
Confidence 34567778999999987654332211 2357999999986554 34444444444332211000
Q ss_pred CCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHH-hhhhcCCccEEEEeCCcccCCcchHHHH-
Q 044798 501 DNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLG-EKLLDVEWGYAVLDEGHRIRNPNAEISL- 578 (1231)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~-~~L~~~~wd~VILDEAH~IKN~~Sk~sk- 578 (1231)
. ......-|-+++|.++.... +.....+|++||+||+|-. ++.|-...
T Consensus 67 ----------------------------~-~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~-Dp~sIA~rg 116 (148)
T PF07652_consen 67 ----------------------------R-THFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFT-DPTSIAARG 116 (148)
T ss_dssp ---------------------------------SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT---SHHHHHHHH
T ss_pred ----------------------------c-cccCCCcccccccHHHHHHhcCcccccCccEEEEeccccC-CHHHHhhhe
Confidence 0 01123458899999986543 3344568999999999984 44443222
Q ss_pred HHHhc-cc--ccEEEecccCc
Q 044798 579 VCKQL-QT--VHRIIMTGAPI 596 (1231)
Q Consensus 579 alk~L-~t--~~RllLTGTPi 596 (1231)
.+..+ .. ...++|||||-
T Consensus 117 ~l~~~~~~g~~~~i~mTATPP 137 (148)
T PF07652_consen 117 YLRELAESGEAKVIFMTATPP 137 (148)
T ss_dssp HHHHHHHTTS-EEEEEESS-T
T ss_pred eHHHhhhccCeeEEEEeCCCC
Confidence 22222 22 25688999993
No 166
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.96 E-value=7.9e-05 Score=85.51 Aligned_cols=71 Identities=18% Similarity=0.074 Sum_probs=52.7
Q ss_pred chHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCC----CcEEEEeCC-cchHHHHHHHHHH
Q 044798 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMY----KPSIVVCPV-TLLRQWKREAEKW 472 (1231)
Q Consensus 402 L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~----kpvLIV~P~-sLl~QW~~E~~kw 472 (1231)
.||.|.+-+.-++.....+..+|+-..+|+|||+..+..+......... .++++++++ +++.|-..++++.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 3999999998888888888899999999999999988766543332222 377777775 4555656666654
No 167
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.96 E-value=7.9e-05 Score=85.51 Aligned_cols=71 Identities=18% Similarity=0.074 Sum_probs=52.7
Q ss_pred chHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCC----CcEEEEeCC-cchHHHHHHHHHH
Q 044798 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMY----KPSIVVCPV-TLLRQWKREAEKW 472 (1231)
Q Consensus 402 L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~----kpvLIV~P~-sLl~QW~~E~~kw 472 (1231)
.||.|.+-+.-++.....+..+|+-..+|+|||+..+..+......... .++++++++ +++.|-..++++.
T Consensus 9 ~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 9 PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 3999999998888888888899999999999999988766543332222 377777775 4555656666654
No 168
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=0.00013 Score=89.64 Aligned_cols=78 Identities=21% Similarity=0.368 Sum_probs=54.7
Q ss_pred EEEEeCCCCHHHHHHHHHHHhCC-CCceEEEEeccccccccCCCCCCEEEE--------c---------CCCC-CcchHH
Q 044798 789 YRRMDGLTPVKQRMALIDEYNNS-SDVFIFILTTKVGGLGTNLTGANRVII--------F---------DPDW-NPSTDV 849 (1231)
Q Consensus 789 ~~rIdGsts~~eRq~iId~Fn~d-~~i~VfLlSTkvGg~GLNLt~AnrVIi--------~---------Dp~W-NPs~d~ 849 (1231)
++-++.-.+.+....+ |..- ...+..+++|.|+...|++++..+||= | ...| +-+.-.
T Consensus 607 vLPLYSLLs~~~Q~RV---F~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASad 683 (1172)
T KOG0926|consen 607 VLPLYSLLSTEKQMRV---FDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASAD 683 (1172)
T ss_pred EeehhhhcCHHHhhhh---ccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccc
Confidence 4455555665554444 5442 356888999999999999999999973 2 3334 445556
Q ss_pred HHHHhHHhhCCcccEEEEEEEeC
Q 044798 850 QARERAWRIGQKQDVTVYRLITR 872 (1231)
Q Consensus 850 QAigRa~RiGQkk~V~VYRLit~ 872 (1231)
||.||++|+| +-++|||+..
T Consensus 684 QRAGRAGRtg---pGHcYRLYSS 703 (1172)
T KOG0926|consen 684 QRAGRAGRTG---PGHCYRLYSS 703 (1172)
T ss_pred hhccccCCCC---CCceeehhhh
Confidence 8888888877 4678999863
No 169
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.85 E-value=0.00032 Score=82.55 Aligned_cols=108 Identities=19% Similarity=0.276 Sum_probs=71.2
Q ss_pred CeEEEEeccHHHHHHHHHHHHHc---------CCcEEEEeCCCCHHHHHHHHHHHh---CCCCceEEEEeccccccccCC
Q 044798 763 HRVLLFAQTQQMLDILESFLIAS---------GYEYRRMDGLTPVKQRMALIDEYN---NSSDVFIFILTTKVGGLGTNL 830 (1231)
Q Consensus 763 ~KVLVFSQ~~~~LdiLe~~L~~~---------Gi~~~rIdGsts~~eRq~iId~Fn---~d~~i~VfLlSTkvGg~GLNL 830 (1231)
.-+|||-...+.++..++.+... .+.++-++ +.+.+.+.+--. ++..-+-+++||..+...|.+
T Consensus 254 GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetslti 329 (699)
T KOG0925|consen 254 GDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTI 329 (699)
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeee
Confidence 37888887777776666666533 23455555 222232221111 122335568899999999988
Q ss_pred CCCCEEEEcCCCC------Cc-----------chHHHHHHhHHhhCCcccEEEEEEEeCCCHH
Q 044798 831 TGANRVIIFDPDW------NP-----------STDVQARERAWRIGQKQDVTVYRLITRGTIE 876 (1231)
Q Consensus 831 t~AnrVIi~Dp~W------NP-----------s~d~QAigRa~RiGQkk~V~VYRLit~gTIE 876 (1231)
.+.-.|| ||.+ || ..-.||.-|++|.|.+++-..|||.++...+
T Consensus 330 dgiv~VI--DpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~ 390 (699)
T KOG0925|consen 330 DGIVFVI--DPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFE 390 (699)
T ss_pred ccEEEEe--cCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhh
Confidence 8766655 6654 44 4556899999999999999999999876543
No 170
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.83 E-value=0.004 Score=80.64 Aligned_cols=202 Identities=15% Similarity=0.113 Sum_probs=106.9
Q ss_pred chHHHHHHHHHHHHHHc----CCCcEEEEeCCCchHHHHHHHHHHHHhhcCCC-CcEEEEeCCcchHHHHHHHHHHc--C
Q 044798 402 LFDYQKVGVQWLWELHC----QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMY-KPSIVVCPVTLLRQWKREAEKWY--P 474 (1231)
Q Consensus 402 L~pyQkegV~wL~el~~----~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~-kpvLIV~P~sLl~QW~~E~~kw~--p 474 (1231)
=|-.|-.++.-+..+-. ++.-||--..||+|||+.=.=++.+|...... +-++-+--.+|.-|--.++.+-. .
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~ 488 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLS 488 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCC
Confidence 37788888877655322 33345667889999999877777777543332 33344444788889888888765 2
Q ss_pred CCeEEEEecccchhhhhhhhccCCCC--CCCCCC-------CC---CCCccCcccCCCcchhhH---HHHhhhcCCCCEE
Q 044798 475 SFHVELLHDSAQDLGFRKKRAKSSDT--DNDGEG-------SH---DSDYEGNLSSRNPKKWDL---LINRVLRSESGLL 539 (1231)
Q Consensus 475 ~lrV~il~gs~~~~~~~~kr~~~~~~--~~~~~~-------~~---~~~~~~~~~~~~~k~~~~---~i~~~~~~~~~Vv 539 (1231)
+-...|+.|+......-......... ..+++. .. ...|.+.........|-. ...+.+ ...|+
T Consensus 489 ~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll--~apv~ 566 (1110)
T TIGR02562 489 DDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLL--AAPVL 566 (1110)
T ss_pred ccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhh--cCCeE
Confidence 34455555654432222111110000 011110 01 123333332222222211 112222 23699
Q ss_pred EeCHHHHHHHHhh---------hhcCCccEEEEeCCcccCCcchHH-HHHHH--hcccccEEEecccCccCChHHHHH
Q 044798 540 ITTYEQLRLLGEK---------LLDVEWGYAVLDEGHRIRNPNAEI-SLVCK--QLQTVHRIIMTGAPIQNKLSELWS 605 (1231)
Q Consensus 540 ItTYe~Lr~~~~~---------L~~~~wd~VILDEAH~IKN~~Sk~-skalk--~L~t~~RllLTGTPiqNnl~EL~S 605 (1231)
|+|...+...... +....-..|||||.|-+-...... ...+. ..-....++||||--..-...|+.
T Consensus 567 V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~L~~ 644 (1110)
T TIGR02562 567 VCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVKTLFR 644 (1110)
T ss_pred EecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHH
Confidence 9999888654422 233344679999999884333222 22222 224567799999976554444443
No 171
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.70 E-value=6.3e-05 Score=85.09 Aligned_cols=94 Identities=17% Similarity=0.197 Sum_probs=72.2
Q ss_pred HHHHHHhCCCCceEEEEeccccccccCCCCC-------CEE-EEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCC
Q 044798 803 ALIDEYNNSSDVFIFILTTKVGGLGTNLTGA-------NRV-IIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGT 874 (1231)
Q Consensus 803 ~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~A-------nrV-Ii~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gT 874 (1231)
...+.|+++. ..|+|+ +++|+.|+.|++- .|| |++++||+....+|-.||+||-||..+..+..|++.-.
T Consensus 52 ~e~~~F~~g~-k~v~ii-s~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~ 129 (278)
T PF13871_consen 52 AEKQAFMDGE-KDVAII-SDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLP 129 (278)
T ss_pred HHHHHHhCCC-ceEEEE-ecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCH
Confidence 4567999984 556555 5999999999952 344 57999999999999999999999998754444555556
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcc
Q 044798 875 IEEKVYHRQIYKHFLTNKILKNPQ 898 (1231)
Q Consensus 875 IEEkIy~rQ~~K~~L~n~vl~d~~ 898 (1231)
.|.+.......|..-..++..++.
T Consensus 130 gE~Rfas~va~rL~sLgAlt~gdr 153 (278)
T PF13871_consen 130 GERRFASTVARRLESLGALTRGDR 153 (278)
T ss_pred HHHHHHHHHHHHHhhccccccCcc
Confidence 788888888777777777666543
No 172
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.64 E-value=9.6e-05 Score=80.12 Aligned_cols=67 Identities=24% Similarity=0.271 Sum_probs=47.6
Q ss_pred hchHHHHHHHHHHHHHHcCCCc-EEEEeCCCchHHHHHHHHHHHHh------hcCCCCcEEEEeCC-cchHHHHHHHHH
Q 044798 401 NLFDYQKVGVQWLWELHCQRAG-GIIGDEMGLGKTIQVLSFLGALH------FSNMYKPSIVVCPV-TLLRQWKREAEK 471 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~G-gILADEMGLGKTIqaIA~L~~L~------~s~~~kpvLIV~P~-sLl~QW~~E~~k 471 (1231)
+|-+.|..+|..+ ....+ +++.-..|+|||-.+.+++..+. .....+++||+||. ..+.+-...+.+
T Consensus 1 ~ln~~Q~~Ai~~~----~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSA----LSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHH----CTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHH----HcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 3678999999766 45556 88899999999988777777762 35667899999995 556677666666
No 173
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=97.50 E-value=0.00032 Score=83.92 Aligned_cols=101 Identities=23% Similarity=0.294 Sum_probs=80.4
Q ss_pred hcCCeEEEEeccHHHHHHHHHHHHHcCCc-EEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEE
Q 044798 760 DQGHRVLLFAQTQQMLDILESFLIASGYE-YRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVII 838 (1231)
Q Consensus 760 ~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~-~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi 838 (1231)
..|+-|+-||.- -+--+...+.++|.. ++.|.|+.+++.|.+--..||+..+-.-+|+.|++.|.||||. ..||||
T Consensus 356 k~GDCvV~FSkk--~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF 432 (700)
T KOG0953|consen 356 KPGDCVVAFSKK--DIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIF 432 (700)
T ss_pred CCCCeEEEeehh--hHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEE
Confidence 458888888853 334455666677665 9999999999999999999999655555688999999999996 799999
Q ss_pred cCCC---------CCcchHHHHHHhHHhhCCccc
Q 044798 839 FDPD---------WNPSTDVQARERAWRIGQKQD 863 (1231)
Q Consensus 839 ~Dp~---------WNPs~d~QAigRa~RiGQkk~ 863 (1231)
++.- -..+...|--||++|.|.+-+
T Consensus 433 ~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~ 466 (700)
T KOG0953|consen 433 YSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYP 466 (700)
T ss_pred eecccCCcccceeccHHHHHHHhhcccccccCCc
Confidence 9764 234556699999999998766
No 174
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=97.46 E-value=0.002 Score=78.55 Aligned_cols=123 Identities=22% Similarity=0.285 Sum_probs=78.5
Q ss_pred CeEEEEeccHHHHHHHHHHHHH----c-----CCcEEEEeCCCCHHHHHHHHHHHhC-CCCceEEEEeccccccccCCCC
Q 044798 763 HRVLLFAQTQQMLDILESFLIA----S-----GYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGLGTNLTG 832 (1231)
Q Consensus 763 ~KVLVFSQ~~~~LdiLe~~L~~----~-----Gi~~~rIdGsts~~eRq~iId~Fn~-d~~i~VfLlSTkvGg~GLNLt~ 832 (1231)
.-+|||-.....+...+..|.. . .+-++-|+.+.+.....++ |.. .++++-+++.|..+...|++.+
T Consensus 474 GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakI---FePtP~gaRKVVLATNIAETSlTIdg 550 (902)
T KOG0923|consen 474 GDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKI---FEPTPPGARKVVLATNIAETSLTIDG 550 (902)
T ss_pred ccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhh---cCCCCCCceeEEEeecchhhceeecC
Confidence 3677776655555444444432 2 2446778889887766555 554 3456777889999999999999
Q ss_pred CCEEEEcCCCC------Ccc--------------hHHHHHHhHHhhCCcccEEEEEEEeCCC----HHHHHHHHHHHHHH
Q 044798 833 ANRVIIFDPDW------NPS--------------TDVQARERAWRIGQKQDVTVYRLITRGT----IEEKVYHRQIYKHF 888 (1231)
Q Consensus 833 AnrVIi~Dp~W------NPs--------------~d~QAigRa~RiGQkk~V~VYRLit~gT----IEEkIy~rQ~~K~~ 888 (1231)
.+.|| ||.+ ||. .-.||-||++|. -|-.+|||.+.-+ +|+. --=++....
T Consensus 551 I~yVi--DpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRt---gPGKCfRLYt~~aY~~eLE~~-t~PEIqRtn 624 (902)
T KOG0923|consen 551 IKYVI--DPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRT---GPGKCFRLYTAWAYEHELEEM-TVPEIQRTN 624 (902)
T ss_pred eEEEe--cCccccccCcCCCcCceeEEEeeechhhhhhhccccCCC---CCCceEEeechhhhhhhhccC-CCcceeecc
Confidence 98887 5544 543 334666666665 4667899998433 3321 112345567
Q ss_pred HHHHHh
Q 044798 889 LTNKIL 894 (1231)
Q Consensus 889 L~n~vl 894 (1231)
|.|-||
T Consensus 625 L~nvVL 630 (902)
T KOG0923|consen 625 LGNVVL 630 (902)
T ss_pred chhHHH
Confidence 777776
No 175
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=96.83 E-value=0.0065 Score=67.15 Aligned_cols=72 Identities=17% Similarity=0.114 Sum_probs=56.0
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHHcC
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYP 474 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw~p 474 (1231)
-|+|-|.+.+..|... ..+.+.++-.-||-|||-.++-+++.+. .....=+-+|||..++.|-.+-+..-+.
T Consensus 23 liR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsVI~Pmla~~L-Adg~~LvrviVpk~Ll~q~~~~L~~~lg 94 (229)
T PF12340_consen 23 LIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSVIVPMLALAL-ADGSRLVRVIVPKALLEQMRQMLRSRLG 94 (229)
T ss_pred eeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccchHHHHHHHHH-cCCCcEEEEEcCHHHHHHHHHHHHHHHH
Confidence 4799999999888653 3457889999999999987665555444 4445678899999999999888877664
No 176
>PRK10536 hypothetical protein; Provisional
Probab=96.81 E-value=0.0078 Score=67.77 Aligned_cols=156 Identities=17% Similarity=0.117 Sum_probs=86.8
Q ss_pred chHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHHcCCCeEEEE
Q 044798 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELL 481 (1231)
Q Consensus 402 L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw~p~lrV~il 481 (1231)
+-..|...+.|+.. ..-.++--+.|+|||+.++++.......+....++|+=|..-. .|.-.|.|+---.
T Consensus 60 ~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~----ge~LGfLPG~~~e-- 129 (262)
T PRK10536 60 RNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQA----DEDLGFLPGDIAE-- 129 (262)
T ss_pred CCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCc----hhhhCcCCCCHHH--
Confidence 56788888887743 4467778899999999999988865434445556655554322 2333333331000
Q ss_pred ecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhh-cCCCCEEEeCHHHHHHHHhhhhcCCccE
Q 044798 482 HDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVL-RSESGLLITTYEQLRLLGEKLLDVEWGY 560 (1231)
Q Consensus 482 ~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~-~~~~~VvItTYe~Lr~~~~~L~~~~wd~ 560 (1231)
+....-.- .+ ........ .. .+...+ .....|-|.....+|-. .+.-++
T Consensus 130 ----K~~p~~~p-------------i~-D~L~~~~~---~~----~~~~~~~~~~~~Iei~~l~ymRGr-----tl~~~~ 179 (262)
T PRK10536 130 ----KFAPYFRP-------------VY-DVLVRRLG---AS----FMQYCLRPEIGKVEIAPFAYMRGR-----TFENAV 179 (262)
T ss_pred ----HHHHHHHH-------------HH-HHHHHHhC---hH----HHHHHHHhccCcEEEecHHHhcCC-----cccCCE
Confidence 00000000 00 00000000 00 111111 11234666666655431 234479
Q ss_pred EEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCC
Q 044798 561 AVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNK 599 (1231)
Q Consensus 561 VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNn 599 (1231)
||||||+++.- ......+..+....+++++|-|-|.+
T Consensus 180 vIvDEaqn~~~--~~~k~~ltR~g~~sk~v~~GD~~QiD 216 (262)
T PRK10536 180 VILDEAQNVTA--AQMKMFLTRLGENVTVIVNGDITQCD 216 (262)
T ss_pred EEEechhcCCH--HHHHHHHhhcCCCCEEEEeCChhhcc
Confidence 99999999943 56667778888899999999997754
No 177
>PRK14873 primosome assembly protein PriA; Provisional
Probab=96.65 E-value=0.013 Score=74.60 Aligned_cols=126 Identities=15% Similarity=0.167 Sum_probs=85.6
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeEEEEecccchhhhhhhhccCCCCCCCCCCC
Q 044798 429 MGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGS 507 (1231)
Q Consensus 429 MGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~ 507 (1231)
.|+|||-..+.++......+ +.+||++|. .+..|+...|...++...|.++|+.......
T Consensus 169 ~GSGKTevyl~~i~~~l~~G--k~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R----------------- 229 (665)
T PRK14873 169 PGEDWARRLAAAAAATLRAG--RGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADR----------------- 229 (665)
T ss_pred CCCcHHHHHHHHHHHHHHcC--CeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHH-----------------
Confidence 39999999888887776654 679999995 8899999999999986789999976432211
Q ss_pred CCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcC-CccEEEEeCCccc--CCcchH------HHH
Q 044798 508 HDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDV-EWGYAVLDEGHRI--RNPNAE------ISL 578 (1231)
Q Consensus 508 ~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~-~wd~VILDEAH~I--KN~~Sk------~sk 578 (1231)
...| ..+......|||.|...+ |..+ +.++||+||=|.- |...+. +..
T Consensus 230 -------------~~~w----~~~~~G~~~IViGtRSAv------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~ 286 (665)
T PRK14873 230 -------------YRRW----LAVLRGQARVVVGTRSAV------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVAL 286 (665)
T ss_pred -------------HHHH----HHHhCCCCcEEEEcceeE------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHH
Confidence 1122 233445678999999866 2232 5789999999864 433222 122
Q ss_pred HHHhcccccEEEecccCc
Q 044798 579 VCKQLQTVHRIIMTGAPI 596 (1231)
Q Consensus 579 alk~L~t~~RllLTGTPi 596 (1231)
....+.....++-|+||-
T Consensus 287 ~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 287 LRAHQHGCALLIGGHART 304 (665)
T ss_pred HHHHHcCCcEEEECCCCC
Confidence 222223444566799994
No 178
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.54 E-value=0.0075 Score=65.90 Aligned_cols=156 Identities=19% Similarity=0.216 Sum_probs=72.5
Q ss_pred chHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHHcCCCeEEEE
Q 044798 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELL 481 (1231)
Q Consensus 402 L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw~p~lrV~il 481 (1231)
+-++|...+.-|. ...-.++.-..|+|||+.|++....+...+...+++|+-|..-+..+ + -+.|+---.-+
T Consensus 5 ~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~---l-GflpG~~~eK~ 76 (205)
T PF02562_consen 5 KNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGED---L-GFLPGDLEEKM 76 (205)
T ss_dssp -SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT--------SS--------
T ss_pred CCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccc---c-ccCCCCHHHHH
Confidence 4578999998885 34467788899999999999988888777888899888886533222 1 11221000000
Q ss_pred ecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCC-CcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcCCccE
Q 044798 482 HDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSR-NPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGY 560 (1231)
Q Consensus 482 ~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~~wd~ 560 (1231)
. .+...+......- .... +...+ ....|-+.+...+|- ..+...+
T Consensus 77 ~------------------------p~~~p~~d~l~~~~~~~~----~~~~~-~~~~Ie~~~~~~iRG-----rt~~~~~ 122 (205)
T PF02562_consen 77 E------------------------PYLRPIYDALEELFGKEK----LEELI-QNGKIEIEPLAFIRG-----RTFDNAF 122 (205)
T ss_dssp -------------------------TTTHHHHHHHTTTS-TTC----HHHHH-HTTSEEEEEGGGGTT-------B-SEE
T ss_pred H------------------------HHHHHHHHHHHHHhChHh----HHHHh-hcCeEEEEehhhhcC-----ccccceE
Confidence 0 0000000000000 0000 11111 122455554443322 1234589
Q ss_pred EEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChH
Q 044798 561 AVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLS 601 (1231)
Q Consensus 561 VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~ 601 (1231)
||+|||+++. ...+...+..+....+++++|-|.|.+..
T Consensus 123 iIvDEaQN~t--~~~~k~ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 123 IIVDEAQNLT--PEELKMILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp EEE-SGGG----HHHHHHHHTTB-TT-EEEEEE--------
T ss_pred EEEecccCCC--HHHHHHHHcccCCCcEEEEecCceeecCC
Confidence 9999999983 33455667777888999999999876543
No 179
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.36 E-value=0.013 Score=63.45 Aligned_cols=59 Identities=20% Similarity=0.195 Sum_probs=40.6
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchH
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLR 463 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~ 463 (1231)
+|-+-|++++..++. ....-.+|.-..|+|||.....++..+... ..++++++|..-..
T Consensus 1 ~L~~~Q~~a~~~~l~--~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~--g~~v~~~apT~~Aa 59 (196)
T PF13604_consen 1 TLNEEQREAVRAILT--SGDRVSVLQGPAGTGKTTLLKALAEALEAA--GKRVIGLAPTNKAA 59 (196)
T ss_dssp -S-HHHHHHHHHHHH--CTCSEEEEEESTTSTHHHHHHHHHHHHHHT--T--EEEEESSHHHH
T ss_pred CCCHHHHHHHHHHHh--cCCeEEEEEECCCCCHHHHHHHHHHHHHhC--CCeEEEECCcHHHH
Confidence 367899999998865 344457787889999998766655555443 37999999975443
No 180
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=96.28 E-value=0.0052 Score=74.88 Aligned_cols=66 Identities=23% Similarity=0.229 Sum_probs=49.9
Q ss_pred hhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcc-hHHHHHHH
Q 044798 399 FNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTL-LRQWKREA 469 (1231)
Q Consensus 399 ~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sL-l~QW~~E~ 469 (1231)
...|-+-|+.+|.++.. .+ .=.++--+.|+|||.+.+-+|..+...+ +.+||.+|..+ +.|-.+-+
T Consensus 183 ~~~ln~SQk~Av~~~~~--~k-~l~~I~GPPGTGKT~TlvEiI~qlvk~~--k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 183 NKNLNSSQKAAVSFAIN--NK-DLLIIHGPPGTGKTRTLVEIISQLVKQK--KRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred CccccHHHHHHHHHHhc--cC-CceEeeCCCCCCceeeHHHHHHHHHHcC--CeEEEEcCchHHHHHHHHHh
Confidence 34688999999998844 22 4456667899999999998888887655 89999999744 56665543
No 181
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=96.18 E-value=0.056 Score=61.45 Aligned_cols=121 Identities=19% Similarity=0.207 Sum_probs=69.8
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchH----HHHHHHHHHcCCC
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLR----QWKREAEKWYPSF 476 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~----QW~~E~~kw~p~l 476 (1231)
.+++-|+-|+--| ..|-|.-..+|=|||+++..++ ++.. -..+++=|||....+. +|...|-+++ ++
T Consensus 77 ~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~a-~~~A-L~G~~V~vvT~NdyLA~RD~~~~~~~y~~L-Gl 147 (266)
T PF07517_consen 77 RPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALPA-ALNA-LQGKGVHVVTSNDYLAKRDAEEMRPFYEFL-GL 147 (266)
T ss_dssp ---HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHHH-HHHH-TTSS-EEEEESSHHHHHHHHHHHHHHHHHT-T-
T ss_pred cccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHHH-HHHH-HhcCCcEEEeccHHHhhccHHHHHHHHHHh-hh
Confidence 3556666666433 3466989999999999875333 3322 2346888888875554 3888888877 66
Q ss_pred eEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHH--h---
Q 044798 477 HVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLG--E--- 551 (1231)
Q Consensus 477 rV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~--~--- 551 (1231)
.|.+......... ++ ... ..+|+-+|-..+.-+. +
T Consensus 148 sv~~~~~~~~~~~-r~-------------------------------------~~Y--~~dI~Y~t~~~~~fD~Lrd~~~ 187 (266)
T PF07517_consen 148 SVGIITSDMSSEE-RR-------------------------------------EAY--AADIVYGTNSEFGFDYLRDNLA 187 (266)
T ss_dssp -EEEEETTTEHHH-HH-------------------------------------HHH--HSSEEEEEHHHHHHHHHHHTT-
T ss_pred ccccCccccCHHH-HH-------------------------------------HHH--hCcccccccchhhHHHHHHHHh
Confidence 7666654432111 00 011 1368888877765321 1
Q ss_pred ----hhhcCCccEEEEeCCcccC
Q 044798 552 ----KLLDVEWGYAVLDEGHRIR 570 (1231)
Q Consensus 552 ----~L~~~~wd~VILDEAH~IK 570 (1231)
......++++|+||++.+.
T Consensus 188 ~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 188 LSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp SSGGG--SSSSSEEEECTHHHHT
T ss_pred hccchhccCCCCEEEEeccceEE
Confidence 1224578999999998763
No 182
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.16 E-value=0.02 Score=72.07 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=42.2
Q ss_pred ceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhC
Q 044798 814 VFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIG 859 (1231)
Q Consensus 814 i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiG 859 (1231)
..-||.|--+.-+|.+=+.+=.++-+-+.-+-..-.|-+||.-|+-
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLa 528 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLA 528 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeee
Confidence 3788999999999999999998888999999999999999999984
No 183
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.11 E-value=0.011 Score=58.83 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=30.5
Q ss_pred hhhhcCCccEEEEeCCcccCCcchHHHHHHHhc--ccccEEEecccC
Q 044798 551 EKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQL--QTVHRIIMTGAP 595 (1231)
Q Consensus 551 ~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L--~t~~RllLTGTP 595 (1231)
..+....-.+|||||+|++. .......++.+ .....++|+|||
T Consensus 81 ~~l~~~~~~~lviDe~~~l~--~~~~l~~l~~l~~~~~~~vvl~G~~ 125 (131)
T PF13401_consen 81 DALDRRRVVLLVIDEADHLF--SDEFLEFLRSLLNESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHCTEEEEEEETTHHHH--THHHHHHHHHHTCSCBEEEEEEESS
T ss_pred HHHHhcCCeEEEEeChHhcC--CHHHHHHHHHHHhCCCCeEEEEECh
Confidence 33444444799999999984 25555666666 566679999999
No 184
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.05 E-value=0.023 Score=67.17 Aligned_cols=45 Identities=29% Similarity=0.309 Sum_probs=33.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHH
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKR 467 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~ 467 (1231)
.|+--..|+|||+.++.++..+........++++|+...+.+...
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~ 48 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLR 48 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHH
Confidence 355667999999999999988844455678889999766665544
No 185
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.95 E-value=0.058 Score=69.00 Aligned_cols=180 Identities=13% Similarity=0.170 Sum_probs=102.8
Q ss_pred CCcccccCCcccChhhhh----hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC
Q 044798 383 PPFVTLEGGLKIPESIFN----NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP 458 (1231)
Q Consensus 383 ~~~~~~~~~~~iP~~i~~----~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P 458 (1231)
||.+......-++|.+.. .|-.-|++|+.-.+. ...---|++. .|+|||-++..++..|+..+ +.+|+.|=
T Consensus 647 pP~f~~~~~~~~~p~~~~~~~~~LN~dQr~A~~k~L~--aedy~LI~GM-PGTGKTTtI~~LIkiL~~~g--kkVLLtsy 721 (1100)
T KOG1805|consen 647 PPKFVDALSKVLIPKIKKIILLRLNNDQRQALLKALA--AEDYALILGM-PGTGKTTTISLLIKILVALG--KKVLLTSY 721 (1100)
T ss_pred CchhhcccccccCchhhHHHHhhcCHHHHHHHHHHHh--ccchheeecC-CCCCchhhHHHHHHHHHHcC--CeEEEEeh
Confidence 444433444555666655 889999999866543 3444455555 89999999888888887655 78898888
Q ss_pred C-cchHHHHHHHHHHcCCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCC
Q 044798 459 V-TLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESG 537 (1231)
Q Consensus 459 ~-sLl~QW~~E~~kw~p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~ 537 (1231)
+ +.+.|..--+..+ .+.++.-+....-...-+. +.. ......+.+.. +... -....
T Consensus 722 ThsAVDNILiKL~~~----~i~~lRLG~~~kih~~v~e----------------~~~-~~~~s~ks~~~-l~~~-~~~~~ 778 (1100)
T KOG1805|consen 722 THSAVDNILIKLKGF----GIYILRLGSEEKIHPDVEE----------------FTL-TNETSEKSYAD-LKKF-LDQTS 778 (1100)
T ss_pred hhHHHHHHHHHHhcc----CcceeecCCccccchHHHH----------------Hhc-ccccchhhHHH-HHHH-hCCCc
Confidence 5 5566766665544 2222211111000000000 000 11111122221 1222 23446
Q ss_pred EEEeCHHHHHHHHhhhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCcc
Q 044798 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597 (1231)
Q Consensus 538 VvItTYe~Lr~~~~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiq 597 (1231)
||.+|--.+- ...|....|||+|+|||-.|--|- ++--|....+++|-|-+.|
T Consensus 779 IVa~TClgi~--~plf~~R~FD~cIiDEASQI~lP~-----~LgPL~~s~kFVLVGDh~Q 831 (1100)
T KOG1805|consen 779 IVACTCLGIN--HPLFVNRQFDYCIIDEASQILLPL-----CLGPLSFSNKFVLVGDHYQ 831 (1100)
T ss_pred EEEEEccCCC--chhhhccccCEEEEccccccccch-----hhhhhhhcceEEEeccccc
Confidence 7776655443 223556679999999998885443 4445677788888887766
No 186
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=95.81 E-value=0.027 Score=69.13 Aligned_cols=168 Identities=20% Similarity=0.207 Sum_probs=98.5
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeE
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHV 478 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV 478 (1231)
.+|-.-|..+|... .++.=.||--..|+|||++..+++..+... ..+|+||++|. ..+.|-..-|++- +++|
T Consensus 409 pkLN~SQ~~AV~~V----L~rplsLIQGPPGTGKTvtsa~IVyhl~~~-~~~~VLvcApSNiAVDqLaeKIh~t--gLKV 481 (935)
T KOG1802|consen 409 PKLNASQSNAVKHV----LQRPLSLIQGPPGTGKTVTSATIVYHLARQ-HAGPVLVCAPSNIAVDQLAEKIHKT--GLKV 481 (935)
T ss_pred hhhchHHHHHHHHH----HcCCceeeecCCCCCceehhHHHHHHHHHh-cCCceEEEcccchhHHHHHHHHHhc--CceE
Confidence 35778899999876 455667889999999999988888777655 57899999996 5677888888874 4777
Q ss_pred EEEecccchhhhhh-----hh--ccCCCCCCCC-CCCCCCCccCcccCCCcchhhHH---HHhhhcCCCCEEEeCHHHHH
Q 044798 479 ELLHDSAQDLGFRK-----KR--AKSSDTDNDG-EGSHDSDYEGNLSSRNPKKWDLL---INRVLRSESGLLITTYEQLR 547 (1231)
Q Consensus 479 ~il~gs~~~~~~~~-----kr--~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~~~---i~~~~~~~~~VvItTYe~Lr 547 (1231)
+-+........... .. .+.... .+- ......+..+..+....+++..+ ..+.+....+|+-+|--...
T Consensus 482 vRl~aksRE~~~S~vs~L~lh~~~~~~~~-pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~Ag 560 (935)
T KOG1802|consen 482 VRLCAKSREDIESDVSFLSLHEQLRNMDK-PELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVGAG 560 (935)
T ss_pred eeeehhhhhhccCCccHHHHHHHHhccCc-HHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEeccccc
Confidence 65543221100000 00 000000 000 00000001111222223333322 22334466788888876553
Q ss_pred HHHhhhhcCCccEEEEeCCcccCCcchHHH
Q 044798 548 LLGEKLLDVEWGYAVLDEGHRIRNPNAEIS 577 (1231)
Q Consensus 548 ~~~~~L~~~~wd~VILDEAH~IKN~~Sk~s 577 (1231)
. ..|..+.|..|++|||-..--+.+.+-
T Consensus 561 d--~rl~~~kfr~VLiDEaTQatEpe~LiP 588 (935)
T KOG1802|consen 561 D--RRLSKFKFRTVLIDEATQATEPECLIP 588 (935)
T ss_pred c--hhhccccccEEEEecccccCCcchhhh
Confidence 2 235568899999999988777665543
No 187
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=95.74 E-value=0.046 Score=65.87 Aligned_cols=116 Identities=16% Similarity=0.168 Sum_probs=93.1
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHH----cCC----cEEEEeCCCCHHHHHHHHHHHhCCCCc
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIA----SGY----EYRRMDGLTPVKQRMALIDEYNNSSDV 814 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~----~Gi----~~~rIdGsts~~eRq~iId~Fn~d~~i 814 (1231)
+.+.|+.....++-.+...|-++|-||..+...+++-...+. .|- .+..+.|+-..+.|.++-...-.+. .
T Consensus 506 ~~~~~i~E~s~~~~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~-L 584 (1034)
T KOG4150|consen 506 EKSSKVVEVSHLFAEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGK-L 584 (1034)
T ss_pred hhhhHHHHHHHHHHHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCe-e
Confidence 467788888888888888899999999999887766544332 121 2445778888889988877666653 3
Q ss_pred eEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCC
Q 044798 815 FIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQ 860 (1231)
Q Consensus 815 ~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQ 860 (1231)
.-+++|.+..+||++-+-+.|+.+..|++.+.+.|-.||++|-..
T Consensus 585 -~giIaTNALELGIDIG~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 585 -CGIIATNALELGIDIGHLDAVLHLGFPGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred -eEEEecchhhhccccccceeEEEccCchhHHHHHHHhccccccCC
Confidence 346799999999999999999999999999999999999999653
No 188
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=95.70 E-value=0.0051 Score=80.32 Aligned_cols=70 Identities=29% Similarity=0.266 Sum_probs=53.4
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCch--HHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHH
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLG--KTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKW 472 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLG--KTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw 472 (1231)
.+.+||.....-.... ......++++.|+| ||+.+..+.......+.....++++|..+..+|..+...+
T Consensus 84 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~ 155 (866)
T COG0553 84 ILIPHQLDIALEVLNE--LALRVLIADEVGLGDLKTIEAGAILKELLLRGEIKRVLILVPKTLRAQWVVELLEK 155 (866)
T ss_pred ccCcchhhhhhhhhhh--hhhchhhcccccccccccccccccchHhhhhhhhccceeccchHHHHHHHHHhhhh
Confidence 4566776555332221 12237889999999 9999888888887788889999999999999999998776
No 189
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=95.68 E-value=0.031 Score=59.04 Aligned_cols=81 Identities=20% Similarity=0.210 Sum_probs=56.5
Q ss_pred HHHhcCCeEEEEeccHHHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecc--ccccccCC
Q 044798 757 VWKDQGHRVLLFAQTQQMLDILESFLIASG----YEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTK--VGGLGTNL 830 (1231)
Q Consensus 757 ~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~G----i~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTk--vGg~GLNL 830 (1231)
.+.....++|||..+..+++.+...+...+ +.+.. .+ ...+..+++.|..+. ..+|+++. ...+|+|+
T Consensus 4 l~~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~-q~---~~~~~~~l~~~~~~~--~~il~~v~~g~~~EGiD~ 77 (167)
T PF13307_consen 4 LISAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFV-QG---SKSRDELLEEFKRGE--GAILLAVAGGSFSEGIDF 77 (167)
T ss_dssp HHHCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEE-ST---CCHHHHHHHHHCCSS--SEEEEEETTSCCGSSS--
T ss_pred HHhcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeee-cC---cchHHHHHHHHHhcc--CeEEEEEecccEEEeecC
Confidence 344556799999999999999999998653 33322 22 357889999999975 45566776 78999999
Q ss_pred CC--CCEEEEcCCCC
Q 044798 831 TG--ANRVIIFDPDW 843 (1231)
Q Consensus 831 t~--AnrVIi~Dp~W 843 (1231)
.+ +..||+.-.|+
T Consensus 78 ~~~~~r~vii~glPf 92 (167)
T PF13307_consen 78 PGDLLRAVIIVGLPF 92 (167)
T ss_dssp ECESEEEEEEES---
T ss_pred CCchhheeeecCCCC
Confidence 85 78899988776
No 190
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.48 E-value=0.1 Score=66.50 Aligned_cols=68 Identities=19% Similarity=0.174 Sum_probs=51.7
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHH
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKW 472 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw 472 (1231)
..|-+.|+.+|.++.. .....++--..|+|||.++++++..+...+ .++||++|. ..+.+....+...
T Consensus 156 ~~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g--~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKRG--LRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHcC--CCEEEEcCcHHHHHHHHHHHHhC
Confidence 3688999999988633 334567888899999999988888776554 489999996 4466677777653
No 191
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=95.47 E-value=0.1 Score=66.38 Aligned_cols=89 Identities=18% Similarity=0.144 Sum_probs=61.5
Q ss_pred cChhhhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHH----Hhh----------c-------C----
Q 044798 394 IPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA----LHF----------S-------N---- 448 (1231)
Q Consensus 394 iP~~i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~----L~~----------s-------~---- 448 (1231)
+|-.+-.++||-|+.-..-++........|+|-..+|+|||+..|+...+ +.. . .
T Consensus 14 v~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~ 93 (945)
T KOG1132|consen 14 VPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSG 93 (945)
T ss_pred ceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCC
Confidence 34444456799999888888888888889999999999999885543322 220 0 0
Q ss_pred ---------C-----CCcEEEEeCC--cchHHHHHHHHHHcCCCeEEEEe
Q 044798 449 ---------M-----YKPSIVVCPV--TLLRQWKREAEKWYPSFHVELLH 482 (1231)
Q Consensus 449 ---------~-----~kpvLIV~P~--sLl~QW~~E~~kw~p~lrV~il~ 482 (1231)
+ ..|.++.+-. +.+.|-.+|+.+..=..+..|+.
T Consensus 94 g~~s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~vkmtVLg 143 (945)
T KOG1132|consen 94 GEKSEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYRVKMTVLG 143 (945)
T ss_pred CCchhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCCCceEEee
Confidence 0 1356777775 45889999999875335555553
No 192
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=95.29 E-value=0.11 Score=62.59 Aligned_cols=71 Identities=17% Similarity=0.199 Sum_probs=49.6
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCC-CCcEEEEeCCcc--hHHHHHHHH
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM-YKPSIVVCPVTL--LRQWKREAE 470 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~-~kpvLIV~P~sL--l~QW~~E~~ 470 (1231)
...||-|..-..-+..-...++.|+|-...|+|||+..++++.+.....+ ...-||-|..++ +..-..|++
T Consensus 15 ~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 15 DYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred cccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHH
Confidence 35678886554444444567888999999999999999998877655444 456789998654 334444443
No 193
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=95.28 E-value=0.078 Score=66.81 Aligned_cols=57 Identities=25% Similarity=0.190 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCC---CCcEEEEeCCcchHH
Q 044798 404 DYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM---YKPSIVVCPVTLLRQ 464 (1231)
Q Consensus 404 pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~---~kpvLIV~P~sLl~Q 464 (1231)
+.|+.++... ..+.-.||.-..|+|||.++..++..+..... ...+++++|+.-.-.
T Consensus 148 ~~Qk~A~~~a----l~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~ 207 (586)
T TIGR01447 148 NWQKVAVALA----LKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAA 207 (586)
T ss_pred HHHHHHHHHH----hhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHH
Confidence 6899888766 34567888999999999998887777654322 146899999755444
No 194
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.83 E-value=0.18 Score=65.27 Aligned_cols=64 Identities=19% Similarity=0.069 Sum_probs=48.2
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHH
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKRE 468 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E 468 (1231)
.|-+-|++++..+. ...-.||.-..|+|||..+-+++..+...+...++++++|+........+
T Consensus 323 ~l~~~Q~~Ai~~~~----~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 323 GLSEEQKQALDTAI----QHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCHHHHHHHHHHH----hCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHH
Confidence 57899999998762 34568889999999998877777666554434678889998776665544
No 195
>PRK04296 thymidine kinase; Provisional
Probab=94.70 E-value=0.082 Score=57.06 Aligned_cols=34 Identities=21% Similarity=0.129 Sum_probs=25.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP 458 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P 458 (1231)
.++.-+||.|||..++.++..+... ..+++|+.|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~--g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEER--GMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHc--CCeEEEEec
Confidence 3567789999999998888776543 357777755
No 196
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.56 E-value=1.9 Score=56.06 Aligned_cols=70 Identities=16% Similarity=0.094 Sum_probs=48.0
Q ss_pred hhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcC--CCCcEEEEeCC-cchHHHHHHHHHHc
Q 044798 398 IFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN--MYKPSIVVCPV-TLLRQWKREAEKWY 473 (1231)
Q Consensus 398 i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~--~~kpvLIV~P~-sLl~QW~~E~~kw~ 473 (1231)
+...|-|-|+++|.+. .+..++-...|+|||.+.+.-+++|.... ....+|+|+-+ .....-..-+.+..
T Consensus 6 ~l~~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~ 78 (721)
T PRK11773 6 LLDSLNDKQREAVAAP------LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLL 78 (721)
T ss_pred HHHhcCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHh
Confidence 3456899999999642 34567777899999999998888887533 33568888884 33333444444443
No 197
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=94.31 E-value=0.11 Score=65.66 Aligned_cols=61 Identities=25% Similarity=0.176 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcC--CCCcEEEEeCCcchHHHHH
Q 044798 403 FDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN--MYKPSIVVCPVTLLRQWKR 467 (1231)
Q Consensus 403 ~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~--~~kpvLIV~P~sLl~QW~~ 467 (1231)
.+.|+.++.-. ....-+||.-..|+|||.++..++..+.... ...++++++|+.-.-.=..
T Consensus 154 ~d~Qk~Av~~a----~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~ 216 (615)
T PRK10875 154 VDWQKVAAAVA----LTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLT 216 (615)
T ss_pred CHHHHHHHHHH----hcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHH
Confidence 47899999755 3456788899999999999888887765432 2346888899755444333
No 198
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=93.55 E-value=0.83 Score=44.89 Aligned_cols=36 Identities=19% Similarity=0.114 Sum_probs=23.2
Q ss_pred HHHHHHHHHcC--CCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 409 GVQWLWELHCQ--RAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 409 gV~wL~el~~~--~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
.+.++...... +...++.-+.|+|||..+-.++..+
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34444443333 5567888999999997666555544
No 199
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=93.20 E-value=0.98 Score=54.92 Aligned_cols=126 Identities=16% Similarity=0.171 Sum_probs=94.7
Q ss_pred chHHHHHHH-HHHHHH--hcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEec
Q 044798 745 SEKMKVVAQ-VLKVWK--DQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTT 821 (1231)
Q Consensus 745 S~Kl~~L~e-LLk~~~--~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlST 821 (1231)
..++....+ +|..+. ....++|||..+--..=.|..+|+..++.|+.++--++..+-..+-..|..+ ...+||+|-
T Consensus 280 d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G-~~~iLL~TE 358 (442)
T PF06862_consen 280 DARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG-RKPILLYTE 358 (442)
T ss_pred hHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC-CceEEEEEh
Confidence 445555554 555555 3356999999988888889999999999999999999999999999999998 677777775
Q ss_pred ccc-ccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCC----cccEEEEEEEe
Q 044798 822 KVG-GLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQ----KQDVTVYRLIT 871 (1231)
Q Consensus 822 kvG-g~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQ----kk~V~VYRLit 871 (1231)
+.- =.=..+.++.+||+|.||-+|.-|..-+.-...-.+ ..++.|.-|.+
T Consensus 359 R~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lys 413 (442)
T PF06862_consen 359 RFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYS 413 (442)
T ss_pred HHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEec
Confidence 543 233456789999999999999999988765544333 22344444554
No 200
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=92.95 E-value=5.2 Score=51.71 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=46.8
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhc-C-CCCcEEEEeCC-cchHHHHHHHHHHc
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS-N-MYKPSIVVCPV-TLLRQWKREAEKWY 473 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s-~-~~kpvLIV~P~-sLl~QW~~E~~kw~ 473 (1231)
.|-|-|+++|.+. .+.+++....|+|||.+.+.-++++... + .+..+|+|+.+ .....-..-+....
T Consensus 2 ~Ln~~Q~~av~~~------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 3778999999742 3556777789999999999999888754 3 34568999984 33334444455443
No 201
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.93 E-value=1 Score=54.08 Aligned_cols=69 Identities=7% Similarity=0.107 Sum_probs=43.7
Q ss_pred CHHHHHHHHhhhhcCCccEEEEeCCcccCCcch---HHHHHHHhccc--ccEEEecccCccCChHHHHHhhhhhcC
Q 044798 542 TYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNA---EISLVCKQLQT--VHRIIMTGAPIQNKLSELWSLFDFVFP 612 (1231)
Q Consensus 542 TYe~Lr~~~~~L~~~~wd~VILDEAH~IKN~~S---k~skalk~L~t--~~RllLTGTPiqNnl~EL~SLl~FL~P 612 (1231)
+|..+......+ ...++||+|++.+.....- .+...+..+.. ..-++|++|-=++.+.+++.-+..+.+
T Consensus 241 ~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~ 314 (388)
T PRK12723 241 SFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSY 314 (388)
T ss_pred cHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 445554444433 3689999999988753322 22233333332 345789999988999988887766544
No 202
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=92.16 E-value=0.41 Score=63.01 Aligned_cols=131 Identities=20% Similarity=0.290 Sum_probs=82.7
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcc-----hHHHHHHHHHHcCCCeEEEEecccchhhhhhh
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTL-----LRQWKREAEKWYPSFHVELLHDSAQDLGFRKK 493 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sL-----l~QW~~E~~kw~p~lrV~il~gs~~~~~~~~k 493 (1231)
.+...++|...|+|||+.|= ++.+. ....+++.-|+|... .+.|.+-|..- .++++.-+.|....
T Consensus 1158 ~nd~v~vga~~gsgkt~~ae--~a~l~-~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~-~G~~~~~l~ge~s~------ 1227 (1674)
T KOG0951|consen 1158 TNDNVLVGAPNGSGKTACAE--LALLR-PDTIGRAVYIAPLEEIADEQYRDWEKKFSKL-LGLRIVKLTGETSL------ 1227 (1674)
T ss_pred ccceEEEecCCCCchhHHHH--HHhcC-CccceEEEEecchHHHHHHHHHHHHHhhccc-cCceEEecCCcccc------
Confidence 44678999999999998653 22222 445678999999544 44588887776 45666555543210
Q ss_pred hccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcCCccEEEEeCCcccCCcc
Q 044798 494 RAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPN 573 (1231)
Q Consensus 494 r~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~~wd~VILDEAH~IKN~~ 573 (1231)
...+....+|+|.|++.+.... .-...++.|+||.|.|....
T Consensus 1228 -----------------------------------~lkl~~~~~vii~tpe~~d~lq---~iQ~v~l~i~d~lh~igg~~ 1269 (1674)
T KOG0951|consen 1228 -----------------------------------DLKLLQKGQVIISTPEQWDLLQ---SIQQVDLFIVDELHLIGGVY 1269 (1674)
T ss_pred -----------------------------------chHHhhhcceEEechhHHHHHh---hhhhcceEeeehhhhhcccC
Confidence 1112234589999999986653 22357899999999997543
Q ss_pred hH-------HHHHHHhcccccEEEecccCcc
Q 044798 574 AE-------ISLVCKQLQTVHRIIMTGAPIQ 597 (1231)
Q Consensus 574 Sk-------~skalk~L~t~~RllLTGTPiq 597 (1231)
.+ +.....++....|++--.|-+.
T Consensus 1270 g~v~evi~S~r~ia~q~~k~ir~v~ls~~la 1300 (1674)
T KOG0951|consen 1270 GAVYEVICSMRYIASQLEKKIRVVALSSSLA 1300 (1674)
T ss_pred CceEEEEeeHHHHHHHHHhheeEEEeehhhc
Confidence 22 3444555656666553333333
No 203
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=92.08 E-value=6 Score=51.58 Aligned_cols=54 Identities=17% Similarity=0.016 Sum_probs=40.9
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCC--CCcEEEEeCC
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM--YKPSIVVCPV 459 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~--~kpvLIV~P~ 459 (1231)
..|-|-|+.+|.+. .+..++-...|+|||.+.+.-++++..... +..+|+|+-+
T Consensus 3 ~~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT 58 (726)
T TIGR01073 3 AHLNPEQREAVKTT------EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFT 58 (726)
T ss_pred cccCHHHHHHHhCC------CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeecc
Confidence 35889999999642 345677788999999999988888876432 3458888775
No 204
>PHA02533 17 large terminase protein; Provisional
Probab=92.08 E-value=0.67 Score=57.92 Aligned_cols=55 Identities=24% Similarity=0.109 Sum_probs=38.2
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV 459 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~ 459 (1231)
.|.|+|+..+.+|+. ++-.++.-.=..|||..+.+++..+........+++++|.
T Consensus 59 ~L~p~Q~~i~~~~~~----~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~ 113 (534)
T PHA02533 59 QMRDYQKDMLKIMHK----NRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHK 113 (534)
T ss_pred CCcHHHHHHHHHHhc----CeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 588999998887732 2333666677899998877665444333444578888884
No 205
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=92.05 E-value=0.76 Score=44.53 Aligned_cols=45 Identities=18% Similarity=0.042 Sum_probs=30.7
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKR 467 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~ 467 (1231)
...+|.-.+|+|||..+..++..+.... ..++++.+......|..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~ 47 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLD 47 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHH
Confidence 4567888999999998887776654322 36777777655554433
No 206
>PF02270 TFIIF_beta: Transcription initiation factor IIF, beta subunit; InterPro: IPR003196 Accurate transcription in vivo requires at least six general transcription initiation factors, in addition to RNA polymerase II. Transcription initiation factor IIF (TFIIF) is a tetramer of two beta subunits associate with two alpha subunits which interacts directly with RNA polymerase II. The beta subunit of TFIIF is required for recruitment of RNA polymerase II onto the promoter. ; GO: 0005524 ATP binding, 0006367 transcription initiation from RNA polymerase II promoter, 0005674 transcription factor TFIIF complex; PDB: 1F3U_C 2BBY_A 1BBY_A.
Probab=91.89 E-value=0.22 Score=57.09 Aligned_cols=61 Identities=18% Similarity=0.278 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHhhcCCCCChHHHHHHhcccCCCCChHHHHHHHHhhhccccCCC-CCceeeccCCC
Q 044798 1164 QPEILIRQICTFMQQRGGSSNSACIVEHFKDRVPSKDLPLFKNLLKEIATLQKDPS-GSRWVLKLNFV 1230 (1231)
Q Consensus 1164 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~f~~~~~~~~~~~f~~~l~~~~~~~~~~~-~~~w~lk~~~~ 1230 (1231)
+.++|+..|..-+.++.+ -+-..|.+.++ .=..-.|++|++||.+++.|. .+.|.|||||+
T Consensus 213 ~~~eL~d~lF~~Fe~~~y-wslK~L~~~t~-----QP~~yLKeiL~eIa~~~k~g~~~~~w~LKpeyk 274 (275)
T PF02270_consen 213 DKNELLDLLFKLFEKHQY-WSLKDLRQRTQ-----QPEAYLKEILEEIAVLNKRGPHKNMWELKPEYK 274 (275)
T ss_dssp HHHHHHHHHHHHHHH-S--B-HHHHHHH-------S-HHHHHHHHHHH--EE--TT---EE----SS-
T ss_pred CHHHHHHHHHHHHHhCCC-CCHHHHHHHHC-----CCHHHHHHHHHHHHHHhccCCcCCcEecchHHc
Confidence 367899999887777644 67778877775 345788999999999999864 68999999996
No 207
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=91.71 E-value=1.1 Score=50.72 Aligned_cols=25 Identities=20% Similarity=0.045 Sum_probs=19.8
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhh
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
+.+|.-+.|+|||..|-++...+..
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4589999999999988777665543
No 208
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=91.69 E-value=0.89 Score=52.86 Aligned_cols=41 Identities=22% Similarity=0.051 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHcCCC--cEEEEeCCCchHHHHHHHHHHHHhh
Q 044798 406 QKVGVQWLWELHCQRA--GGIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 406 QkegV~wL~el~~~~~--GgILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
|...+.++......+. ..++.-+.|+|||..+.++...+..
T Consensus 20 ~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 20 QDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred CHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4455666655555544 6788999999999999988877753
No 209
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.15 E-value=1.2 Score=50.16 Aligned_cols=43 Identities=30% Similarity=0.286 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHHHHHcCCCc-EEEEeCCCchHHHHHHHHHHHH
Q 044798 402 LFDYQKVGVQWLWELHCQRAG-GIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 402 L~pyQkegV~wL~el~~~~~G-gILADEMGLGKTIqaIA~L~~L 444 (1231)
.-+.+..++..+......+.| .+|.-+.|+|||..+-.++..+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l 67 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL 67 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence 345556666666544444443 5789999999998877665544
No 210
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=91.06 E-value=1.1 Score=52.56 Aligned_cols=39 Identities=21% Similarity=0.425 Sum_probs=29.1
Q ss_pred CccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCcc
Q 044798 557 EWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQ 597 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiq 597 (1231)
.-.+||+|||+++- ...+--.+...-...+|+|||-|.|
T Consensus 351 ~~~FiIIDEaQNLT--pheikTiltR~G~GsKIVl~gd~aQ 389 (436)
T COG1875 351 PDSFIIIDEAQNLT--PHELKTILTRAGEGSKIVLTGDPAQ 389 (436)
T ss_pred ccceEEEehhhccC--HHHHHHHHHhccCCCEEEEcCCHHH
Confidence 34589999999983 3344455566677889999999876
No 211
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.56 E-value=2.3 Score=51.80 Aligned_cols=55 Identities=11% Similarity=0.147 Sum_probs=35.9
Q ss_pred CccEEEEeCCcccCCcchHHHHHHHhc-c-----cccEEEecccCccCChHHHHHhhhhhcC
Q 044798 557 EWGYAVLDEGHRIRNPNAEISLVCKQL-Q-----TVHRIIMTGAPIQNKLSELWSLFDFVFP 612 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~~Sk~skalk~L-~-----t~~RllLTGTPiqNnl~EL~SLl~FL~P 612 (1231)
.+++||+|-+-+....... ...+..+ . ....++|++|+=.+.+.+++..+..+.+
T Consensus 299 ~~DlVlIDt~G~~~~d~~~-~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~ 359 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRL-IEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPL 359 (424)
T ss_pred CCCEEEEeCCCCCCCCHHH-HHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCC
Confidence 5799999998664332222 2222222 2 2346889999988888888888877654
No 212
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=90.43 E-value=0.47 Score=59.63 Aligned_cols=171 Identities=17% Similarity=0.203 Sum_probs=103.3
Q ss_pred cChhhhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHH-HHH
Q 044798 394 IPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKRE-AEK 471 (1231)
Q Consensus 394 iP~~i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E-~~k 471 (1231)
.|........|||++-..-|-. ..-...++.-..-+|||..++.++.+..... ..|+|+|.|. .....|..+ |..
T Consensus 9 ~pG~w~~~~~Py~~eimd~~~~--~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~-P~~~l~v~Pt~~~a~~~~~~rl~P 85 (557)
T PF05876_consen 9 EPGPWRTDRTPYLREIMDALSD--PSVREVVVMKSAQVGKTELLLNWIGYSIDQD-PGPMLYVQPTDDAAKDFSKERLDP 85 (557)
T ss_pred CCCCCCCCCChhHHHHHHhcCC--cCccEEEEEEcchhhHhHHHHhhceEEEEeC-CCCEEEEEEcHHHHHHHHHHHHHH
Confidence 3566667889999998877632 1134567788899999998877776665444 4899999996 667777643 443
Q ss_pred Hc---CCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHH
Q 044798 472 WY---PSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRL 548 (1231)
Q Consensus 472 w~---p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~ 548 (1231)
.+ |.++-.+..... + ...+ .+..+.+. +..+.+....+-
T Consensus 86 mi~~sp~l~~~~~~~~~-------~-----------------------~~~~-----t~~~k~f~-gg~l~~~ga~S~-- 127 (557)
T PF05876_consen 86 MIRASPVLRRKLSPSKS-------R-----------------------DSGN-----TILYKRFP-GGFLYLVGANSP-- 127 (557)
T ss_pred HHHhCHHHHHHhCchhh-------c-----------------------ccCC-----chhheecC-CCEEEEEeCCCC--
Confidence 32 333211111000 0 0000 01111122 334555544433
Q ss_pred HHhhhhcCCccEEEEeCCccc----CCcchHHHHHHHhc---ccccEEEecccCccCChHHHHHhh
Q 044798 549 LGEKLLDVEWGYAVLDEGHRI----RNPNAEISLVCKQL---QTVHRIIMTGAPIQNKLSELWSLF 607 (1231)
Q Consensus 549 ~~~~L~~~~wd~VILDEAH~I----KN~~Sk~skalk~L---~t~~RllLTGTPiqNnl~EL~SLl 607 (1231)
..|......+|++||...+ .+.+..+..+.... ....++++..||......-++.++
T Consensus 128 --~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~~R~~tf~~~~K~~~~STPt~~~~~~I~~~~ 191 (557)
T PF05876_consen 128 --SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAEKRTKTFGSNRKILRISTPTIEGTSRIERLY 191 (557)
T ss_pred --cccccCCcCEEEEechhhccccCccCCCHHHHHHHHHhhhccCcEEEEeCCCCCCCCCHHHHHH
Confidence 3356678899999999988 34455666666654 345789999999877544454444
No 213
>PLN03025 replication factor C subunit; Provisional
Probab=88.93 E-value=4.2 Score=47.51 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHcCC--CcEEEEeCCCchHHHHHHHHHHHHh
Q 044798 406 QKVGVQWLWELHCQR--AGGIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 406 QkegV~wL~el~~~~--~GgILADEMGLGKTIqaIA~L~~L~ 445 (1231)
|.+.+.+|......+ ...+|.-+.|+|||-.+.+++..+.
T Consensus 18 ~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 18 NEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 444555554433332 3568999999999999888887764
No 214
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.29 E-value=8 Score=46.73 Aligned_cols=95 Identities=9% Similarity=0.096 Sum_probs=53.3
Q ss_pred CHHHHHHHHhhhhc-CCccEEEEeCCcccCCcchHHHHHHHhc---ccc-cEEEecccCccCChHHHHHhhhhhcCC---
Q 044798 542 TYEQLRLLGEKLLD-VEWGYAVLDEGHRIRNPNAEISLVCKQL---QTV-HRIIMTGAPIQNKLSELWSLFDFVFPG--- 613 (1231)
Q Consensus 542 TYe~Lr~~~~~L~~-~~wd~VILDEAH~IKN~~Sk~skalk~L---~t~-~RllLTGTPiqNnl~EL~SLl~FL~P~--- 613 (1231)
+...+......+.. .++|+||+|-+=+.-+....+......+ ... .-|+|++|--.+.+.++...|+.+...
T Consensus 304 d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI 383 (436)
T PRK11889 304 DEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIV 383 (436)
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEE
Confidence 44555544444443 3689999998866543333333332222 222 235588887777777777777665432
Q ss_pred --------CCCChhHHHHhhccccccCCCCC
Q 044798 614 --------KLGVLPVFEAEFAVPITVGGYAN 636 (1231)
Q Consensus 614 --------~lg~~~~F~~~f~~pI~~g~~~~ 636 (1231)
.+|..-.....+..||..-+...
T Consensus 384 ~TKLDET~k~G~iLni~~~~~lPIsyit~GQ 414 (436)
T PRK11889 384 FTKFDETASSGELLKIPAVSSAPIVLMTDGQ 414 (436)
T ss_pred EEcccCCCCccHHHHHHHHHCcCEEEEeCCC
Confidence 24444456666677776544433
No 215
>PRK06526 transposase; Provisional
Probab=87.99 E-value=2.6 Score=47.83 Aligned_cols=55 Identities=11% Similarity=0.092 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHH
Q 044798 407 KVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEK 471 (1231)
Q Consensus 407 kegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~k 471 (1231)
..+..|+ ..+.+.+|.-..|+|||..+.++...+...+ .+++++ ...+|.+++..
T Consensus 89 l~~~~fi----~~~~nlll~Gp~GtGKThLa~al~~~a~~~g--~~v~f~----t~~~l~~~l~~ 143 (254)
T PRK06526 89 LGTLDFV----TGKENVVFLGPPGTGKTHLAIGLGIRACQAG--HRVLFA----TAAQWVARLAA 143 (254)
T ss_pred HhcCchh----hcCceEEEEeCCCCchHHHHHHHHHHHHHCC--Cchhhh----hHHHHHHHHHH
Confidence 3455677 3566788999999999999998877765443 344443 23456666543
No 216
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=87.84 E-value=2.6 Score=54.35 Aligned_cols=41 Identities=24% Similarity=0.119 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHcCCC---cEEEEeCCCchHHHHHHHHHHHHhh
Q 044798 406 QKVGVQWLWELHCQRA---GGIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 406 QkegV~wL~el~~~~~---GgILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
|...+..|...+..+. .-||.-.-|+|||..+..|...+.+
T Consensus 21 Qe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnC 64 (830)
T PRK07003 21 QEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNC 64 (830)
T ss_pred cHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 5555555554444432 3478899999999999988888764
No 217
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=87.37 E-value=2.2 Score=49.23 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=22.5
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcCC
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSNM 449 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~~ 449 (1231)
+.+|.-+.|+|||..|.++...++..+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 5678899999999998888777765443
No 218
>PF13245 AAA_19: Part of AAA domain
Probab=87.27 E-value=1.6 Score=40.38 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=33.3
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHhhc--CCCCcEEEEeCCcchHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALHFS--NMYKPSIVVCPVTLLRQ 464 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~~s--~~~kpvLIV~P~sLl~Q 464 (1231)
.-.++--..|+|||-+++..+..+... ...+++|||+|....-+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~ 56 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAAD 56 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHH
Confidence 345668999999999988888888743 23678999999755444
No 219
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=87.14 E-value=4.9 Score=47.84 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=32.8
Q ss_pred hhchHHHHHHHHHHHHHHcCCC---cEEEEeCCCchHHHHHHHHHHHHhh
Q 044798 400 NNLFDYQKVGVQWLWELHCQRA---GGIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~---GgILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
..|.- |..++..|...+..+. .-++.-+.|+|||..+..++..+..
T Consensus 23 ~~l~G-h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 23 TRLFG-HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred hhccC-cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 34543 4455666666655555 4678999999999999988888765
No 220
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.88 E-value=4.2 Score=50.14 Aligned_cols=42 Identities=21% Similarity=0.121 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHcCCC-c--EEEEeCCCchHHHHHHHHHHHHhh
Q 044798 405 YQKVGVQWLWELHCQRA-G--GIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 405 yQkegV~wL~el~~~~~-G--gILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
.|...+..|......+. + -|+.-+.|+|||..|..++..+..
T Consensus 22 GQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 22 HQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 45555555544434433 2 489999999999999988887754
No 221
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.63 E-value=7.4 Score=49.67 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.4
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhh
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
.-||.-..|+|||..+..|...+.+
T Consensus 40 A~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 40 AYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3478999999999999998888865
No 222
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=85.90 E-value=1.2 Score=56.27 Aligned_cols=61 Identities=8% Similarity=0.025 Sum_probs=40.2
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHH----HHHHHHHHcCCCeEEEE
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQ----WKREAEKWYPSFHVELL 481 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~Q----W~~E~~kw~p~lrV~il 481 (1231)
+-.+..-.=--|||-.+.+.+..+...-..-.+++++|- .+... -..-+++|+|...+...
T Consensus 255 k~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~v 320 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHV 320 (738)
T ss_pred cceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeee
Confidence 445666677889999877666666655556789999993 33333 44445678776555433
No 223
>PF05793 TFIIF_alpha: Transcription initiation factor IIF, alpha subunit (TFIIF-alpha); InterPro: IPR008851 Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) or RNA polymerase II-associating protein 74 (RAP74) is the large subunit of transcription factor IIF (TFIIF), which is essential for accurate initiation and stimulates elongation by RNA polymerase II [].; GO: 0003677 DNA binding, 0045893 positive regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1F3U_F 1NHA_A 1I27_A 1J2X_A 2K7L_A 1ONV_A.
Probab=85.76 E-value=0.4 Score=59.77 Aligned_cols=57 Identities=25% Similarity=0.453 Sum_probs=44.5
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHhccc---CCC-CChHHHHHHHHhhhccccCCCC-Cceeecc
Q 044798 1169 IRQICTFMQQRGGSSNSACIVEHFKDR---VPS-KDLPLFKNLLKEIATLQKDPSG-SRWVLKL 1227 (1231)
Q Consensus 1169 ~~~~~~~~~~~~~~~~t~~~~~~f~~~---~~~-~~~~~f~~~l~~~~~~~~~~~~-~~w~lk~ 1227 (1231)
-+.|+.||.+.+ .||.+||..|+.+ |+. +++.+|-+||+.||..++..++ .+++||.
T Consensus 466 Ee~VrryL~rkP--mTTkdLL~kFk~k~~~l~s~~~~~~~~~ILkki~p~~k~~~~~~~~~lk~ 527 (527)
T PF05793_consen 466 EEEVRRYLRRKP--MTTKDLLKKFKSKKTGLSSEEDKNVFAQILKKINPIQKTIGGKMYLVLKE 527 (527)
T ss_dssp HHHHHHHHHHS---B-HHHHHHHTSHHHHSS-HHHHHHHHHHHHHHH--EEEEETTEEEEES--
T ss_pred HHHHHHHHhcCC--ccHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhChHheeccCceEEEeeC
Confidence 378999999654 9999999999999 755 8899999999999999998776 7888873
No 224
>CHL00181 cbbX CbbX; Provisional
Probab=85.19 E-value=3.6 Score=47.50 Aligned_cols=26 Identities=23% Similarity=0.114 Sum_probs=20.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcC
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSN 448 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~ 448 (1231)
.+|.-+.|+|||..|-++...++..+
T Consensus 62 ill~G~pGtGKT~lAr~la~~~~~~g 87 (287)
T CHL00181 62 MSFTGSPGTGKTTVALKMADILYKLG 87 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 58889999999999888877665444
No 225
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.95 E-value=5.8 Score=52.17 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=21.2
Q ss_pred cE-EEEeCCCchHHHHHHHHHHHHhh
Q 044798 422 GG-IIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 422 Gg-ILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
.. |+.-+.|+|||..+.+|+..+..
T Consensus 39 HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 39 HAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhccC
Confidence 44 78999999999999988887754
No 226
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=84.93 E-value=7.7 Score=45.78 Aligned_cols=44 Identities=18% Similarity=0.006 Sum_probs=30.0
Q ss_pred chHHHHHHHHHHHHH-HcC--CCcEEEEeCCCchHHHHHHHHHHHHh
Q 044798 402 LFDYQKVGVQWLWEL-HCQ--RAGGIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 402 L~pyQkegV~wL~el-~~~--~~GgILADEMGLGKTIqaIA~L~~L~ 445 (1231)
-+..|.+.+.-.+.. ... ....+|.-+.|+|||..+-.++..+.
T Consensus 19 gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~ 65 (365)
T TIGR02928 19 HRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELE 65 (365)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 367777666444432 222 24578889999999999888877664
No 227
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=84.83 E-value=5.6 Score=51.96 Aligned_cols=59 Identities=14% Similarity=-0.009 Sum_probs=42.7
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHH
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQ 464 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~Q 464 (1231)
.|-+-|+++|.-+.. ...-.+|-...|+|||..+-+++..+... ...+++++|.....+
T Consensus 352 ~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll~~i~~~~~~~--g~~V~~~ApTg~Aa~ 410 (744)
T TIGR02768 352 RLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTMLKAAREAWEAA--GYRVIGAALSGKAAE 410 (744)
T ss_pred CCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHHHHHHHHHHhC--CCeEEEEeCcHHHHH
Confidence 578999999987632 23456888899999998877666555433 357888899765544
No 228
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=84.83 E-value=3.6 Score=44.90 Aligned_cols=134 Identities=13% Similarity=0.140 Sum_probs=70.9
Q ss_pred EEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHHcCCCeEEEEecccchhhhhhhhccCCCCCCC
Q 044798 424 IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDND 503 (1231)
Q Consensus 424 ILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw~p~lrV~il~gs~~~~~~~~kr~~~~~~~~~ 503 (1231)
++.-.+|.|||-++.-+.+.+... .+++.+||--+--.-=.++++.|.-.+.+.++......
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~---------------- 66 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTES---------------- 66 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTS----------------
T ss_pred EEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcch----------------
Confidence 567889999999988777777655 56677777643322223334444322333332211000
Q ss_pred CCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcCCccEEEEeCCcccCCcchH---HHHHH
Q 044798 504 GEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAE---ISLVC 580 (1231)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~~wd~VILDEAH~IKN~~Sk---~skal 580 (1231)
. .-+.++.....+...++|+|++|=+-+--+.... +...+
T Consensus 67 ----------------~---------------------~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~ 109 (196)
T PF00448_consen 67 ----------------D---------------------PAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLL 109 (196)
T ss_dssp ----------------C---------------------HHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHH
T ss_pred ----------------h---------------------hHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHh
Confidence 0 0011222333444556899999998766443322 22333
Q ss_pred Hhc-ccccEEEecccCccCChHHHHHhhhhhcC
Q 044798 581 KQL-QTVHRIIMTGAPIQNKLSELWSLFDFVFP 612 (1231)
Q Consensus 581 k~L-~t~~RllLTGTPiqNnl~EL~SLl~FL~P 612 (1231)
..+ ....-++|++|--+..+..+......+.+
T Consensus 110 ~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~ 142 (196)
T PF00448_consen 110 EALNPDEVHLVLSATMGQEDLEQALAFYEAFGI 142 (196)
T ss_dssp HHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSST
T ss_pred hhcCCccceEEEecccChHHHHHHHHHhhcccC
Confidence 333 33445778998877777766666665544
No 229
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.66 E-value=8.1 Score=48.25 Aligned_cols=43 Identities=21% Similarity=0.124 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHcCCC--cE-EEEeCCCchHHHHHHHHHHHHhhcC
Q 044798 406 QKVGVQWLWELHCQRA--GG-IIGDEMGLGKTIQVLSFLGALHFSN 448 (1231)
Q Consensus 406 QkegV~wL~el~~~~~--Gg-ILADEMGLGKTIqaIA~L~~L~~s~ 448 (1231)
|...+..|......+. .. ++.-+.|+|||..+.+|+..+...+
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~ 64 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSG 64 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 4455555555444443 23 8899999999999999988886544
No 230
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=83.83 E-value=7.2 Score=46.79 Aligned_cols=47 Identities=23% Similarity=0.195 Sum_probs=32.9
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHH
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAE 470 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~ 470 (1231)
-.+|+-++|.|||..++.++..+... .+++|+|.-..-..|......
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~--g~~VlYvs~EEs~~qi~~Ra~ 130 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKR--GGKVLYVSGEESPEQIKLRAD 130 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEECCcCHHHHHHHHH
Confidence 34788899999999888887766543 368888876555555544433
No 231
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=83.58 E-value=9.3 Score=46.16 Aligned_cols=36 Identities=22% Similarity=0.135 Sum_probs=25.2
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVC 457 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~ 457 (1231)
..+|.-..|+|||..+.++...+........++.|.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 457899999999998887777765443334455543
No 232
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=83.01 E-value=8.9 Score=47.21 Aligned_cols=47 Identities=15% Similarity=-0.030 Sum_probs=29.9
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKR 467 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~ 467 (1231)
.+.+|.-+.|+|||-.+-++...+........++.|.+..++.....
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~ 188 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVD 188 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHH
Confidence 45778999999999877777666554444445555555444444333
No 233
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=82.19 E-value=8.1 Score=47.41 Aligned_cols=42 Identities=19% Similarity=0.080 Sum_probs=27.0
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcch
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLL 462 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl 462 (1231)
...+|.-..|+|||..+-++...+........++.|....++
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~ 190 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT 190 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 346889999999998887777666544333344444333333
No 234
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=81.90 E-value=6 Score=40.98 Aligned_cols=53 Identities=15% Similarity=0.266 Sum_probs=33.7
Q ss_pred EEEeCCCCHHHHHHHHHHHhCCCC-ceEEEEeccc--cccccCCCC--CCEEEEcCCCC
Q 044798 790 RRMDGLTPVKQRMALIDEYNNSSD-VFIFILTTKV--GGLGTNLTG--ANRVIIFDPDW 843 (1231)
Q Consensus 790 ~rIdGsts~~eRq~iId~Fn~d~~-i~VfLlSTkv--Gg~GLNLt~--AnrVIi~Dp~W 843 (1231)
+.+.+..+ .+...+++.|+...+ ...+|+++.- .++||||++ +..||+.-.|+
T Consensus 23 i~~e~~~~-~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPf 80 (142)
T smart00491 23 VFIEGKDS-GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPF 80 (142)
T ss_pred EEEECCCC-chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCC
Confidence 34444432 344788889987432 0134555544 699999986 67888887765
No 235
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=81.81 E-value=8.6 Score=49.80 Aligned_cols=97 Identities=21% Similarity=0.153 Sum_probs=72.0
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHH----HHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEE
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLD----ILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIF 817 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~Ld----iLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~Vf 817 (1231)
+..|||..+..-.+-.....|.+++|.+.+...+. .+..++...|+++..++|+++..+|..++....++ .+.|+
T Consensus 290 ~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g-~~~Iv 368 (681)
T PRK10917 290 DVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASG-EADIV 368 (681)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCC-CCCEE
Confidence 45789988665544444566889999999877654 45555556689999999999999999999999887 46676
Q ss_pred EEeccccccccCCCCCCEEEEc
Q 044798 818 ILTTKVGGLGTNLTGANRVIIF 839 (1231)
Q Consensus 818 LlSTkvGg~GLNLt~AnrVIi~ 839 (1231)
+.|.......+.+.....||+=
T Consensus 369 VgT~~ll~~~v~~~~l~lvVID 390 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVIID 390 (681)
T ss_pred EchHHHhcccchhcccceEEEe
Confidence 6655455556777777776663
No 236
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=81.80 E-value=1.3 Score=47.04 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=25.8
Q ss_pred hcCCCCEEEeCHHHHHHHH--hhh--hcCCccEEEEeCCcccC
Q 044798 532 LRSESGLLITTYEQLRLLG--EKL--LDVEWGYAVLDEGHRIR 570 (1231)
Q Consensus 532 ~~~~~~VvItTYe~Lr~~~--~~L--~~~~wd~VILDEAH~IK 570 (1231)
.....+|||++|..|.... ..+ ....-.+||+||||+|-
T Consensus 116 ~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~ 158 (174)
T PF06733_consen 116 LAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLE 158 (174)
T ss_dssp CGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCG
T ss_pred hcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchH
Confidence 3455799999999885432 222 23355689999999994
No 237
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=81.47 E-value=8.2 Score=47.88 Aligned_cols=67 Identities=21% Similarity=0.152 Sum_probs=47.2
Q ss_pred hhchHHHHHHHHHHHHHH--------cCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHH
Q 044798 400 NNLFDYQKVGVQWLWELH--------CQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEK 471 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~--------~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~k 471 (1231)
.......++.+.|+.... ....|.+|.-..|+|||+.+-++...+ ..+++-|-...++..|.-|..+
T Consensus 248 ~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~-----~~~fi~v~~~~l~sk~vGesek 322 (494)
T COG0464 248 EEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES-----RSRFISVKGSELLSKWVGESEK 322 (494)
T ss_pred HHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC-----CCeEEEeeCHHHhccccchHHH
Confidence 446777788888876532 234578899999999999887766532 2345444444889999888776
No 238
>PRK08727 hypothetical protein; Validated
Probab=81.38 E-value=13 Score=41.51 Aligned_cols=25 Identities=24% Similarity=0.162 Sum_probs=19.7
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhh
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
..+|.-..|+|||--+.++...+..
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~ 67 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQ 67 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4688999999999877777766543
No 239
>PRK14974 cell division protein FtsY; Provisional
Probab=81.25 E-value=15 Score=43.47 Aligned_cols=46 Identities=17% Similarity=0.099 Sum_probs=29.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC----cchHHHHHHHH
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV----TLLRQWKREAE 470 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~----sLl~QW~~E~~ 470 (1231)
.++.-..|.|||.++..++..+... ..++++++.. ..+.||..-..
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~--g~~V~li~~Dt~R~~a~eqL~~~a~ 192 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKN--GFSVVIAAGDTFRAGAIEQLEEHAE 192 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc--CCeEEEecCCcCcHHHHHHHHHHHH
Confidence 4567799999998877766655433 2466666653 44566644333
No 240
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=80.42 E-value=12 Score=44.60 Aligned_cols=41 Identities=20% Similarity=0.044 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcCCC--c-EEEEeCCCchHHHHHHHHHHHHh
Q 044798 405 YQKVGVQWLWELHCQRA--G-GIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 405 yQkegV~wL~el~~~~~--G-gILADEMGLGKTIqaIA~L~~L~ 445 (1231)
-|...+..+......+. . .++.-+.|+|||..+-+++..+.
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 35555555544443332 3 47999999999999988887775
No 241
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=80.36 E-value=9.6 Score=44.83 Aligned_cols=51 Identities=18% Similarity=0.122 Sum_probs=40.8
Q ss_pred hhhhchHHHHHHHHHHHHHHcCCC---cEEEEeCCCchHHHHHHHHHHHHhhcC
Q 044798 398 IFNNLFDYQKVGVQWLWELHCQRA---GGIIGDEMGLGKTIQVLSFLGALHFSN 448 (1231)
Q Consensus 398 i~~~L~pyQkegV~wL~el~~~~~---GgILADEMGLGKTIqaIA~L~~L~~s~ 448 (1231)
|+..+||.|....+.+...+..++ .-++....|+||+..|.+|+..+...+
T Consensus 1 ~~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~ 54 (319)
T PRK08769 1 MTSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASG 54 (319)
T ss_pred CCccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCC
Confidence 356789999999988877665543 456889999999999999999887643
No 242
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=80.17 E-value=11 Score=50.71 Aligned_cols=58 Identities=14% Similarity=-0.032 Sum_probs=38.8
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchH
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLR 463 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~ 463 (1231)
.|-+-|+++|..+.. ...-++|---.|+|||.++-+++..+... ...+++++|+...-
T Consensus 346 ~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~l~~~~~~~e~~--G~~V~~~ApTGkAA 403 (988)
T PRK13889 346 VLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAMLGVAREAWEAA--GYEVRGAALSGIAA 403 (988)
T ss_pred CCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEecCcHHHH
Confidence 478999999987632 22346788889999998754444333322 35688888876544
No 243
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=80.01 E-value=12 Score=49.26 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=21.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhc
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFS 447 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s 447 (1231)
-||.-..|+|||..+..|...|.+.
T Consensus 40 ~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 40 YLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCcc
Confidence 4789999999999999988888653
No 244
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=79.93 E-value=14 Score=48.60 Aligned_cols=50 Identities=22% Similarity=0.197 Sum_probs=32.5
Q ss_pred cChhhhhhchHHHHHHHHHHHHH-Hc-CCC-cEE-EEeCCCchHHHHHHHHHHHHh
Q 044798 394 IPESIFNNLFDYQKVGVQWLWEL-HC-QRA-GGI-IGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 394 iP~~i~~~L~pyQkegV~wL~el-~~-~~~-GgI-LADEMGLGKTIqaIA~L~~L~ 445 (1231)
+|..| .-|+-|..-|...+.- .. .+. ++| |.-.+|+|||.++-.++..+.
T Consensus 753 VPD~L--PhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELq 806 (1164)
T PTZ00112 753 VPKYL--PCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQ 806 (1164)
T ss_pred CCCcC--CChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45433 2477788777555543 22 222 343 899999999999888776653
No 245
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=79.92 E-value=2.7 Score=52.61 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=36.5
Q ss_pred eCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC-C----cchHHHHHHHHHHcCCCeE
Q 044798 427 DEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP-V----TLLRQWKREAEKWYPSFHV 478 (1231)
Q Consensus 427 DEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P-~----sLl~QW~~E~~kw~p~lrV 478 (1231)
-+=--|||..++++|+.++.+-..=.+..|+- + .|.......+.+|+|.-++
T Consensus 209 VPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~v 265 (668)
T PHA03372 209 VPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHT 265 (668)
T ss_pred ecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccce
Confidence 45678999888888877766544556777777 2 3444556667899987665
No 246
>PTZ00293 thymidine kinase; Provisional
Probab=79.77 E-value=10 Score=41.99 Aligned_cols=35 Identities=20% Similarity=0.262 Sum_probs=25.1
Q ss_pred EEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCc
Q 044798 424 IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVT 460 (1231)
Q Consensus 424 ILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~s 460 (1231)
++.-.||+|||...|-.+..... ..++++++-|..
T Consensus 8 vi~GpMfSGKTteLLr~i~~y~~--ag~kv~~~kp~~ 42 (211)
T PTZ00293 8 VIIGPMFSGKTTELMRLVKRFTY--SEKKCVVIKYSK 42 (211)
T ss_pred EEECCCCChHHHHHHHHHHHHHH--cCCceEEEEecc
Confidence 56788999999877765554433 346888888854
No 247
>PRK08116 hypothetical protein; Validated
Probab=79.53 E-value=14 Score=42.25 Aligned_cols=46 Identities=26% Similarity=0.224 Sum_probs=33.5
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKR 467 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~ 467 (1231)
+.|.+|.-+.|+|||..+.+++..+... ..+++++.-..++..+..
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~--~~~v~~~~~~~ll~~i~~ 159 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEK--GVPVIFVNFPQLLNRIKS 159 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEEHHHHHHHHHH
Confidence 4568899999999999999988888654 356666655555555543
No 248
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=79.43 E-value=3.5 Score=46.87 Aligned_cols=54 Identities=19% Similarity=0.162 Sum_probs=39.2
Q ss_pred chHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcC--CCCcEEEEeCCcc
Q 044798 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN--MYKPSIVVCPVTL 461 (1231)
Q Consensus 402 L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~--~~kpvLIV~P~sL 461 (1231)
|-+-|..+|.+. .+..++-...|+|||.+++.-+..+...+ ....+|||+++..
T Consensus 1 l~~eQ~~~i~~~------~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~ 56 (315)
T PF00580_consen 1 LTDEQRRIIRST------EGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNA 56 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHH
T ss_pred CCHHHHHHHhCC------CCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHH
Confidence 456788888762 34456666799999999988888877665 4567999999754
No 249
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=78.96 E-value=13 Score=46.33 Aligned_cols=96 Identities=13% Similarity=0.152 Sum_probs=71.8
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEe
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS-GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILT 820 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~-Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlS 820 (1231)
+..|||..+.+.++......|.++||.+........+...|+.. |..+..++|.++..+|........++ ...| ++.
T Consensus 5 ~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g-~~~I-VVG 82 (505)
T TIGR00595 5 VTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG-EILV-VIG 82 (505)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC-CCCE-EEC
Confidence 46799999998888888788999999999988877777777654 78899999999999998887777665 3455 455
Q ss_pred ccccccccCCCCCCEEEEcC
Q 044798 821 TKVGGLGTNLTGANRVIIFD 840 (1231)
Q Consensus 821 TkvGg~GLNLt~AnrVIi~D 840 (1231)
|..+ .=+-+.....||+-+
T Consensus 83 Trsa-lf~p~~~l~lIIVDE 101 (505)
T TIGR00595 83 TRSA-LFLPFKNLGLIIVDE 101 (505)
T ss_pred ChHH-HcCcccCCCEEEEEC
Confidence 5542 223455666666654
No 250
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.93 E-value=13 Score=47.20 Aligned_cols=43 Identities=16% Similarity=0.030 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHcCCC--cE-EEEeCCCchHHHHHHHHHHHHhhc
Q 044798 405 YQKVGVQWLWELHCQRA--GG-IIGDEMGLGKTIQVLSFLGALHFS 447 (1231)
Q Consensus 405 yQkegV~wL~el~~~~~--Gg-ILADEMGLGKTIqaIA~L~~L~~s 447 (1231)
.|...+..|......+. .. |+.-..|+|||..+.+|+..+...
T Consensus 17 Gq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 17 GQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 45666666655444432 33 789999999999999988887653
No 251
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=78.31 E-value=10 Score=44.75 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=34.6
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcC
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN 448 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~ 448 (1231)
.+||.|....+-+...-.-...-++.-+.|+|||..|.+|+..+....
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~ 50 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEA 50 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 358888887777765311122346788999999999999999887643
No 252
>PRK05580 primosome assembly protein PriA; Validated
Probab=78.18 E-value=17 Score=47.12 Aligned_cols=96 Identities=13% Similarity=0.099 Sum_probs=72.8
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEe
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS-GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILT 820 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~-Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlS 820 (1231)
+..|||..+...++......|.++||.+........+...|+.. |..+..++|.++..+|.........+ .+.|+ +.
T Consensus 170 ~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g-~~~IV-Vg 247 (679)
T PRK05580 170 VTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRG-EAKVV-IG 247 (679)
T ss_pred CCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcC-CCCEE-Ee
Confidence 34689999988888777777889999999999887777777654 88999999999999998888887776 34554 45
Q ss_pred ccccccccCCCCCCEEEEcC
Q 044798 821 TKVGGLGTNLTGANRVIIFD 840 (1231)
Q Consensus 821 TkvGg~GLNLt~AnrVIi~D 840 (1231)
|... .=+.+.....||+-+
T Consensus 248 Trsa-l~~p~~~l~liVvDE 266 (679)
T PRK05580 248 ARSA-LFLPFKNLGLIIVDE 266 (679)
T ss_pred ccHH-hcccccCCCEEEEEC
Confidence 5432 224556667676655
No 253
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=78.11 E-value=18 Score=36.48 Aligned_cols=34 Identities=18% Similarity=0.042 Sum_probs=24.9
Q ss_pred EEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC
Q 044798 424 IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV 459 (1231)
Q Consensus 424 ILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~ 459 (1231)
+|.-..|+|||..+..++..+.. ..++++++...
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~--~~~~v~~~~~e 36 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT--KGGKVVYVDIE 36 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECC
Confidence 46677999999998888776644 34677777664
No 254
>KOG2905 consensus Transcription initiation factor IIF, small subunit (RAP30) [Transcription]
Probab=78.11 E-value=1.1 Score=49.43 Aligned_cols=60 Identities=18% Similarity=0.214 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHhcccCCCCChHHHHHHHHhhhccccCC-CCCceeeccCCC
Q 044798 1165 PEILIRQICTFMQQRGGSSNSACIVEHFKDRVPSKDLPLFKNLLKEIATLQKDP-SGSRWVLKLNFV 1230 (1231)
Q Consensus 1165 ~~~~~~~~~~~~~~~~~~~~t~~~~~~f~~~~~~~~~~~f~~~l~~~~~~~~~~-~~~~w~lk~~~~ 1230 (1231)
..+++..+..-+..+.. -|-..|++.-+ +=..-.+++|+.||++++.+ ..+.|.|||||+
T Consensus 184 k~evld~lFk~FEk~~y-wtlK~Lv~~t~-----QP~~fLKEiL~~icv~NkKg~~k~tyeLKPEYK 244 (254)
T KOG2905|consen 184 KNEVLDMLFKAFEKYQY-WTLKDLVEITK-----QPEAFLKEILKDICVLNKKGPYKNTYELKPEYK 244 (254)
T ss_pred HHHHHHHHHHHhhcCcc-ccHHHHHHHhc-----CHHHHHHHHHHHHHHHhccCcccCceecCHHHh
Confidence 46788877766654443 45566665443 33566799999999999976 468999999996
No 255
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=77.94 E-value=26 Score=43.10 Aligned_cols=36 Identities=19% Similarity=0.058 Sum_probs=24.8
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVC 457 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~ 457 (1231)
..+|.-+.|+|||.-+-++...+........++.|.
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 468899999999988777776665443334455544
No 256
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=77.89 E-value=18 Score=45.25 Aligned_cols=42 Identities=21% Similarity=0.088 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHcCC--Cc-EEEEeCCCchHHHHHHHHHHHHhhc
Q 044798 406 QKVGVQWLWELHCQR--AG-GIIGDEMGLGKTIQVLSFLGALHFS 447 (1231)
Q Consensus 406 QkegV~wL~el~~~~--~G-gILADEMGLGKTIqaIA~L~~L~~s 447 (1231)
|...+..|...+..+ .. -|+.-..|+|||..|..+...+...
T Consensus 21 q~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 21 QAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 455555555544333 23 3789999999999998888887643
No 257
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=77.88 E-value=7.1 Score=48.72 Aligned_cols=43 Identities=26% Similarity=0.155 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcCC---CcEEEEeCCCchHHHHHHHHHHHHhhc
Q 044798 405 YQKVGVQWLWELHCQR---AGGIIGDEMGLGKTIQVLSFLGALHFS 447 (1231)
Q Consensus 405 yQkegV~wL~el~~~~---~GgILADEMGLGKTIqaIA~L~~L~~s 447 (1231)
-|...+..|......+ ...||.-+.|+|||..|-++...+...
T Consensus 25 Gq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 25 GQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 3555555554433333 367899999999999999888887654
No 258
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=77.60 E-value=22 Score=41.48 Aligned_cols=40 Identities=23% Similarity=0.173 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHHcCC-----CcEEEEeCCCchHHHHHHHHHH
Q 044798 403 FDYQKVGVQWLWELHCQR-----AGGIIGDEMGLGKTIQVLSFLG 442 (1231)
Q Consensus 403 ~pyQkegV~wL~el~~~~-----~GgILADEMGLGKTIqaIA~L~ 442 (1231)
||.=.+++.-|-+++... .+-+|.-+.|.|||..+=-|..
T Consensus 39 Y~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~ 83 (302)
T PF05621_consen 39 YPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRR 83 (302)
T ss_pred CHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHH
Confidence 455556777776655433 3567888999999986655543
No 259
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=77.55 E-value=12 Score=44.93 Aligned_cols=40 Identities=10% Similarity=-0.016 Sum_probs=26.5
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCc
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVT 460 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~s 460 (1231)
.-.+|.-.+|.|||.++..++..+.......++.+|+-.+
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~ 177 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDS 177 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 3456789999999999887776654332224566665543
No 260
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=77.50 E-value=21 Score=43.24 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=21.5
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhc
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFS 447 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s 447 (1231)
.-++.-..|+|||..+.+|...+...
T Consensus 38 a~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 38 AWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 35689999999999999998887653
No 261
>PF13173 AAA_14: AAA domain
Probab=77.47 E-value=12 Score=37.63 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=27.1
Q ss_pred CccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCC
Q 044798 557 EWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNK 599 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNn 599 (1231)
+-.+|||||+|++.+....+...+.. ....++++||+-....
T Consensus 61 ~~~~i~iDEiq~~~~~~~~lk~l~d~-~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDWEDALKFLVDN-GPNIKIILTGSSSSLL 102 (128)
T ss_pred CCcEEEEehhhhhccHHHHHHHHHHh-ccCceEEEEccchHHH
Confidence 56799999999997544333222221 2346899999865443
No 262
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=76.96 E-value=3 Score=46.42 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=21.3
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHh
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~ 445 (1231)
..-|++-..|.|||..+.++...|.
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHh
Confidence 4679999999999999888877764
No 263
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=76.82 E-value=1.1e+02 Score=40.10 Aligned_cols=96 Identities=11% Similarity=0.174 Sum_probs=53.4
Q ss_pred CCEEEeCHHHHHHH-H-hhhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEE----EecccCcc--CChHHHHHhh
Q 044798 536 SGLLITTYEQLRLL-G-EKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRI----IMTGAPIQ--NKLSELWSLF 607 (1231)
Q Consensus 536 ~~VvItTYe~Lr~~-~-~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~Rl----lLTGTPiq--Nnl~EL~SLl 607 (1231)
++|+.+|--.|..+ . ..+......-++++-||.+.+.... +-+++.++..+++ +.|--|.+ -.+.-+--.+
T Consensus 100 GGv~fiSsRiLvvDlLt~rIp~~ki~gI~vl~Ah~i~ets~e-aFIlRl~R~knk~gfIkAFsd~P~sf~~gf~~l~r~m 178 (892)
T KOG0442|consen 100 GGVFFISSRILVVDLLTGRIPTEKITGILVLNAHTISETSQE-AFILRLYRSKNKTGFIKAFSDSPESFVSGFSHLERKM 178 (892)
T ss_pred CCeEEeeeceeeeehhcCccchhHcceEEEechhhhhhcchh-HHHHHHHHHhcCCcceeccccCchhhhccchHHHHHH
Confidence 45665555444321 1 2233345678999999999876544 3444444444443 24444432 2234455556
Q ss_pred hhhcCCCCCChhHHHHhhccccccC
Q 044798 608 DFVFPGKLGVLPVFEAEFAVPITVG 632 (1231)
Q Consensus 608 ~FL~P~~lg~~~~F~~~f~~pI~~g 632 (1231)
++++-...-.+|.|...+..+++.-
T Consensus 179 R~Lfvr~v~l~PRF~~~V~s~L~~~ 203 (892)
T KOG0442|consen 179 RNLFVRHVLLWPRFHVNVESSLNQL 203 (892)
T ss_pred HHHHhhhheeccchHhHHhhhhccC
Confidence 6666666666777777776655543
No 264
>PRK08084 DNA replication initiation factor; Provisional
Probab=76.78 E-value=15 Score=41.14 Aligned_cols=25 Identities=12% Similarity=0.041 Sum_probs=18.6
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHh
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~ 445 (1231)
...+|.-+.|+|||--+.++...+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4568899999999977666555443
No 265
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=76.42 E-value=12 Score=47.99 Aligned_cols=42 Identities=17% Similarity=0.038 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCC--c-EEEEeCCCchHHHHHHHHHHHHhhc
Q 044798 406 QKVGVQWLWELHCQRA--G-GIIGDEMGLGKTIQVLSFLGALHFS 447 (1231)
Q Consensus 406 QkegV~wL~el~~~~~--G-gILADEMGLGKTIqaIA~L~~L~~s 447 (1231)
|...+..|...+..+. . -|+.-+.|+|||..+..|...+...
T Consensus 21 Qe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 21 QEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4444444444443332 2 4789999999999999888887653
No 266
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=76.35 E-value=14 Score=50.18 Aligned_cols=58 Identities=16% Similarity=-0.011 Sum_probs=40.8
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchH
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLR 463 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~ 463 (1231)
.|-+-|+++|..+. ....-++|----|+|||..+-+++..+... ...++.++|..-.-
T Consensus 381 ~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~--G~~V~g~ApTgkAA 438 (1102)
T PRK13826 381 RLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTMMKAAREAWEAA--GYRVVGGALAGKAA 438 (1102)
T ss_pred CCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEcCcHHHH
Confidence 58899999998762 334456777789999998876665554433 35788888865444
No 267
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=76.33 E-value=15 Score=47.30 Aligned_cols=96 Identities=21% Similarity=0.205 Sum_probs=69.2
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHH----HHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEE
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDIL----ESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIF 817 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiL----e~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~Vf 817 (1231)
+..|||..+..-.+-.....|.+++|-+.+...+.-+ ..++...|+++..++|+++..+|..+++...++ .+.|+
T Consensus 264 ~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g-~~~Ii 342 (630)
T TIGR00643 264 DVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASG-QIHLV 342 (630)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCC-CCCEE
Confidence 4578998765443333345678999999987766544 444445589999999999999999999998876 56676
Q ss_pred EEeccccccccCCCCCCEEEE
Q 044798 818 ILTTKVGGLGTNLTGANRVII 838 (1231)
Q Consensus 818 LlSTkvGg~GLNLt~AnrVIi 838 (1231)
+.|....-..+.+.....||+
T Consensus 343 VgT~~ll~~~~~~~~l~lvVI 363 (630)
T TIGR00643 343 VGTHALIQEKVEFKRLALVII 363 (630)
T ss_pred EecHHHHhccccccccceEEE
Confidence 666555555667777776665
No 268
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=75.84 E-value=29 Score=39.88 Aligned_cols=39 Identities=23% Similarity=0.199 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCC--CcEEEEeCCCchHHHHHHHHHHHH
Q 044798 406 QKVGVQWLWELHCQR--AGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 406 QkegV~wL~el~~~~--~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
|.+.+..+......+ ...+|.-+.|+|||..+-+++..+
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 444554444433332 247899999999999888777665
No 269
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.38 E-value=30 Score=44.34 Aligned_cols=42 Identities=24% Similarity=0.173 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCC--cE-EEEeCCCchHHHHHHHHHHHHhhc
Q 044798 406 QKVGVQWLWELHCQRA--GG-IIGDEMGLGKTIQVLSFLGALHFS 447 (1231)
Q Consensus 406 QkegV~wL~el~~~~~--Gg-ILADEMGLGKTIqaIA~L~~L~~s 447 (1231)
|...+..|...+..+. .. |+.-..|+|||..+.+|...+.+.
T Consensus 21 Qe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~ 65 (618)
T PRK14951 21 QEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65 (618)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 6666666666554443 33 789999999999999988888653
No 270
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=75.19 E-value=16 Score=45.69 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=21.4
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
...|.+|.-++|+|||..+-++...+
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL 240 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSL 240 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhh
Confidence 35688999999999999887776655
No 271
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.08 E-value=21 Score=43.18 Aligned_cols=41 Identities=22% Similarity=0.141 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCC---CcEEEEeCCCchHHHHHHHHHHHHhh
Q 044798 406 QKVGVQWLWELHCQR---AGGIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 406 QkegV~wL~el~~~~---~GgILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
|...+..|......+ ..-|+.-+.|+|||..|.+|...+..
T Consensus 21 q~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 21 QEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred hHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 444444444433333 23568899999999999999888765
No 272
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.01 E-value=25 Score=45.20 Aligned_cols=41 Identities=17% Similarity=0.051 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHcCC---CcEEEEeCCCchHHHHHHHHHHHHhh
Q 044798 406 QKVGVQWLWELHCQR---AGGIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 406 QkegV~wL~el~~~~---~GgILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
|...+..|...+..+ ...|+.-..|+|||..|.+++..+..
T Consensus 20 Qe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 20 QNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 333344444433333 24489999999999999888887754
No 273
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=74.95 E-value=19 Score=41.63 Aligned_cols=49 Identities=16% Similarity=0.145 Sum_probs=28.7
Q ss_pred CccEEEEeCCcccCCcch--HHHHHHHhcccccEEEecccCccCChHHHHH
Q 044798 557 EWGYAVLDEGHRIRNPNA--EISLVCKQLQTVHRIIMTGAPIQNKLSELWS 605 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~~S--k~skalk~L~t~~RllLTGTPiqNnl~EL~S 605 (1231)
..++||+||+|.+..... .....+.......++++|++....-+..|.+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s 150 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS 150 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh
Confidence 467999999999833222 1222344445566788888755433333444
No 274
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=74.83 E-value=28 Score=43.77 Aligned_cols=42 Identities=21% Similarity=0.061 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCC--cE-EEEeCCCchHHHHHHHHHHHHhhc
Q 044798 406 QKVGVQWLWELHCQRA--GG-IIGDEMGLGKTIQVLSFLGALHFS 447 (1231)
Q Consensus 406 QkegV~wL~el~~~~~--Gg-ILADEMGLGKTIqaIA~L~~L~~s 447 (1231)
|...+..|......+. .. ++.-+.|.|||-.+.+++..+...
T Consensus 19 qe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~ 63 (535)
T PRK08451 19 QESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCE 63 (535)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCC
Confidence 4444444544443332 23 789999999999999888887643
No 275
>PRK11054 helD DNA helicase IV; Provisional
Probab=74.55 E-value=8.1 Score=49.98 Aligned_cols=79 Identities=15% Similarity=0.008 Sum_probs=57.3
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCC--CCcEEEEeCCcchHHHHHH-HHHHcC--C
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM--YKPSIVVCPVTLLRQWKRE-AEKWYP--S 475 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~--~kpvLIV~P~sLl~QW~~E-~~kw~p--~ 475 (1231)
.|-+-|..+|..- ....++....|+|||.++++-++++...+. ...+|+||......+...+ +....+ .
T Consensus 196 ~L~~~Q~~av~~~------~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~~ 269 (684)
T PRK11054 196 PLNPSQARAVVNG------EDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTED 269 (684)
T ss_pred CCCHHHHHHHhCC------CCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCCC
Confidence 4889999999632 234566667999999999999988876553 3579999998777776665 666554 4
Q ss_pred CeEEEEeccc
Q 044798 476 FHVELLHDSA 485 (1231)
Q Consensus 476 lrV~il~gs~ 485 (1231)
+.+..+|+-+
T Consensus 270 v~v~TFHSla 279 (684)
T PRK11054 270 ITARTFHALA 279 (684)
T ss_pred cEEEeHHHHH
Confidence 5566666543
No 276
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=74.28 E-value=9 Score=43.51 Aligned_cols=72 Identities=14% Similarity=0.114 Sum_probs=50.0
Q ss_pred ccChhhhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHH
Q 044798 393 KIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAE 470 (1231)
Q Consensus 393 ~iP~~i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~ 470 (1231)
..++.+....+-.....+.|+ .++.+.+|.-.+|.|||..++|+...+.. ...+++++.=+.++.+++..+.
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~~----~~~~nl~l~G~~G~GKThLa~Ai~~~l~~--~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 82 EFQPGIDKKALEDLASLVEFF----ERGENLVLLGPPGVGKTHLAIAIGNELLK--AGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcchhHHHHHHHHHHHHHh----ccCCcEEEECCCCCcHHHHHHHHHHHHHH--cCCeEEEEEHHHHHHHHHHHHh
Confidence 334444444444444555565 47788899999999999999999888873 3467777766777777766654
No 277
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=73.76 E-value=21 Score=45.42 Aligned_cols=44 Identities=18% Similarity=-0.001 Sum_probs=27.1
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHH
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQW 465 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW 465 (1231)
..+|.-..|+|||--+.++...+........++.|.-..++..+
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el 359 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEF 359 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH
Confidence 46888999999998777776665433223445544433333333
No 278
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=73.56 E-value=17 Score=46.30 Aligned_cols=42 Identities=21% Similarity=0.182 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCC---CcEEEEeCCCchHHHHHHHHHHHHhhc
Q 044798 406 QKVGVQWLWELHCQR---AGGIIGDEMGLGKTIQVLSFLGALHFS 447 (1231)
Q Consensus 406 QkegV~wL~el~~~~---~GgILADEMGLGKTIqaIA~L~~L~~s 447 (1231)
|...+..|...+..+ ..-||.-..|+|||..+..+...+.+.
T Consensus 29 q~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 29 QEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 444555444444333 356888999999999999998888654
No 279
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.98 E-value=3.6 Score=51.08 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=28.7
Q ss_pred eCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC-CcchHHHHH
Q 044798 427 DEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP-VTLLRQWKR 467 (1231)
Q Consensus 427 DEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P-~sLl~QW~~ 467 (1231)
..+|+|||+++.++|..++..| ++..|+.|- ++++..-..
T Consensus 4 matgsgkt~~ma~lil~~y~kg-yr~flffvnq~nilekt~~ 44 (812)
T COG3421 4 MATGSGKTLVMAGLILECYKKG-YRNFLFFVNQANILEKTKL 44 (812)
T ss_pred cccCCChhhHHHHHHHHHHHhc-hhhEEEEecchhHHHHHHh
Confidence 4689999999999999887665 455555554 666655433
No 280
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=72.96 E-value=20 Score=47.76 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=24.8
Q ss_pred HHHHHHHHcC--CCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 410 VQWLWELHCQ--RAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 410 V~wL~el~~~--~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
|.++++..+. ..+.||.-+.|+|||..+=+++..+
T Consensus 196 i~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 196 IRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred HHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 6666654333 4578999999999998776665544
No 281
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=72.81 E-value=17 Score=44.03 Aligned_cols=53 Identities=13% Similarity=0.198 Sum_probs=33.8
Q ss_pred CccEEEEeCCcccCCcchHH---HHHHHhc-ccccEEEecc--cCccCC--hHHHHHhhhh
Q 044798 557 EWGYAVLDEGHRIRNPNAEI---SLVCKQL-QTVHRIIMTG--APIQNK--LSELWSLFDF 609 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~~Sk~---skalk~L-~t~~RllLTG--TPiqNn--l~EL~SLl~F 609 (1231)
..+++++|-.|.+-+...-. +-....+ .....|+||+ +|-+-+ ..+|.|-|.+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~ 235 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEW 235 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhc
Confidence 57899999999997764333 3333334 3344899998 775543 2456665554
No 282
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=72.63 E-value=3.4 Score=54.19 Aligned_cols=110 Identities=21% Similarity=0.195 Sum_probs=66.0
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cc----hHHHHHHHHHHcCCCeEEEEecccchhhhhhhh
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TL----LRQWKREAEKWYPSFHVELLHDSAQDLGFRKKR 494 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sL----l~QW~~E~~kw~p~lrV~il~gs~~~~~~~~kr 494 (1231)
....++++.+|.|||+.+-..+.......+..++.+|+|. .+ +..|..-+.. |++++.-..+....
T Consensus 943 d~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~--~g~k~ie~tgd~~p------- 1013 (1230)
T KOG0952|consen 943 DLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDEL--PGIKVIELTGDVTP------- 1013 (1230)
T ss_pred chhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhccc--CCceeEeccCccCC-------
Confidence 3567889999999999865444444455556899999993 44 3456544322 34554433322110
Q ss_pred ccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhh----cCCccEEEEeCCcccC
Q 044798 495 AKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLL----DVEWGYAVLDEGHRIR 570 (1231)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~----~~~wd~VILDEAH~IK 570 (1231)
+ + ......+++|||++..-....... -..+..+|+||.|.+.
T Consensus 1014 --------d--------~------------------~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg 1059 (1230)
T KOG0952|consen 1014 --------D--------V------------------KAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLG 1059 (1230)
T ss_pred --------C--------h------------------hheecCceEEcccccccCccccccchhhhccccceeeccccccc
Confidence 0 0 012345899999987743332111 1245679999999886
Q ss_pred Cc
Q 044798 571 NP 572 (1231)
Q Consensus 571 N~ 572 (1231)
..
T Consensus 1060 ~~ 1061 (1230)
T KOG0952|consen 1060 ED 1061 (1230)
T ss_pred CC
Confidence 54
No 283
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=72.46 E-value=27 Score=41.10 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=34.1
Q ss_pred hhchHHHHHHHHHHHHHHcCCC--cE-EEEeCCCchHHHHHHHHHHHHhhc
Q 044798 400 NNLFDYQKVGVQWLWELHCQRA--GG-IIGDEMGLGKTIQVLSFLGALHFS 447 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~--Gg-ILADEMGLGKTIqaIA~L~~L~~s 447 (1231)
..+.-.|...+..+......+. .. ++.-+-|.|||..+.+|+..+...
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~ 55 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 3445556666666666554432 34 889999999999999998887654
No 284
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=72.45 E-value=12 Score=36.65 Aligned_cols=21 Identities=24% Similarity=0.278 Sum_probs=16.1
Q ss_pred EEEeCCCchHHHHHHHHHHHH
Q 044798 424 IIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 424 ILADEMGLGKTIqaIA~L~~L 444 (1231)
+|--+.|+|||..+-.++..+
T Consensus 2 ll~G~~G~GKT~l~~~la~~l 22 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYL 22 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHT
T ss_pred EEECcCCCCeeHHHHHHHhhc
Confidence 566789999998877666554
No 285
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=72.31 E-value=22 Score=40.51 Aligned_cols=46 Identities=24% Similarity=0.234 Sum_probs=29.0
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcc------hHHHHHHHH
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTL------LRQWKREAE 470 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sL------l~QW~~E~~ 470 (1231)
-+.+.-+.|+|||+..=+++..+. ....++|+.|+.. +.-|..++.
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~---~d~~~~v~i~~~~~s~~~~~~ai~~~l~ 104 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLN---EDQVAVVVIDKPTLSDATLLEAIVADLE 104 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcC---CCceEEEEecCcchhHHHHHHHHHHHhc
Confidence 456788999999998775554443 2345556777543 334665554
No 286
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=71.76 E-value=43 Score=35.31 Aligned_cols=47 Identities=26% Similarity=0.172 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCC--c-EEEEeCCCchHHHHHHHHHHHHhhcCCCCc
Q 044798 406 QKVGVQWLWELHCQRA--G-GIIGDEMGLGKTIQVLSFLGALHFSNMYKP 452 (1231)
Q Consensus 406 QkegV~wL~el~~~~~--G-gILADEMGLGKTIqaIA~L~~L~~s~~~kp 452 (1231)
|.+.+..|...+..+. . -|+..+.|.||+-.|.+|+..+........
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~ 51 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED 51 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC
Confidence 5566666666665543 3 478888999999999999998876654433
No 287
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=71.64 E-value=8.5 Score=48.15 Aligned_cols=67 Identities=18% Similarity=0.238 Sum_probs=47.9
Q ss_pred hhhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCC----CCcEEEEeCCcchHHHHHH
Q 044798 397 SIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM----YKPSIVVCPVTLLRQWKRE 468 (1231)
Q Consensus 397 ~i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~----~kpvLIV~P~sLl~QW~~E 468 (1231)
+|...+.+-|-+.+++- .+.-.|+--..|+|||-.|+-=+++|.+..+ .+++||+.|..+.......
T Consensus 208 dIV~TIQkEQneIIR~e-----k~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~ 278 (747)
T COG3973 208 DIVETIQKEQNEIIRFE-----KNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISR 278 (747)
T ss_pred HHHHHhhHhHHHHHhcc-----CCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHH
Confidence 45566777777777542 3444567778999999999888888766432 4789999998877665443
No 288
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=71.43 E-value=22 Score=45.90 Aligned_cols=42 Identities=19% Similarity=0.120 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCC---cEEEEeCCCchHHHHHHHHHHHHhhc
Q 044798 406 QKVGVQWLWELHCQRA---GGIIGDEMGLGKTIQVLSFLGALHFS 447 (1231)
Q Consensus 406 QkegV~wL~el~~~~~---GgILADEMGLGKTIqaIA~L~~L~~s 447 (1231)
|...+..|...+..++ .-||.-..|+|||..+.+|...+...
T Consensus 21 Qe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 21 QEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 4444444444333332 34889999999999998888877543
No 289
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=70.79 E-value=46 Score=39.28 Aligned_cols=48 Identities=21% Similarity=0.037 Sum_probs=37.6
Q ss_pred hchHHHHHHHHHHHHHHcCCC---cEEEEeCCCchHHHHHHHHHHHHhhcC
Q 044798 401 NLFDYQKVGVQWLWELHCQRA---GGIIGDEMGLGKTIQVLSFLGALHFSN 448 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~---GgILADEMGLGKTIqaIA~L~~L~~s~ 448 (1231)
.+||.|...-+.+...+..++ .-++....|+||+..|.+|+..+....
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~ 53 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQN 53 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCC
Confidence 478888888877777655543 457889999999999999998887654
No 290
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=70.47 E-value=39 Score=40.38 Aligned_cols=28 Identities=25% Similarity=0.169 Sum_probs=22.4
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHhhcC
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALHFSN 448 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~~s~ 448 (1231)
...+|.-..|+|||..+-.++..+....
T Consensus 56 ~~~lI~G~~GtGKT~l~~~v~~~l~~~~ 83 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTVKKVFEELEEIA 83 (394)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence 4578999999999999888887765433
No 291
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=70.08 E-value=22 Score=45.69 Aligned_cols=43 Identities=16% Similarity=0.014 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCC---cEEEEeCCCchHHHHHHHHHHHHhhc
Q 044798 405 YQKVGVQWLWELHCQRA---GGIIGDEMGLGKTIQVLSFLGALHFS 447 (1231)
Q Consensus 405 yQkegV~wL~el~~~~~---GgILADEMGLGKTIqaIA~L~~L~~s 447 (1231)
.|...+..|...+..++ .-|+.-+.|+|||..|.+|+..+...
T Consensus 20 Gq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 20 GQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 35555555555444443 34789999999999999999888653
No 292
>PRK11823 DNA repair protein RadA; Provisional
Probab=69.82 E-value=26 Score=43.09 Aligned_cols=47 Identities=26% Similarity=0.273 Sum_probs=33.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHH
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEK 471 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~k 471 (1231)
.+|+-++|.|||.-++.++..+... ..++|.|+-..-..|+.....+
T Consensus 83 ~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~Ees~~qi~~ra~r 129 (446)
T PRK11823 83 VLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGEESASQIKLRAER 129 (446)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccccHHHHHHHHHH
Confidence 4689999999999988887766432 4678888876555665544443
No 293
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=69.59 E-value=32 Score=44.24 Aligned_cols=48 Identities=13% Similarity=-0.023 Sum_probs=30.8
Q ss_pred HHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC
Q 044798 410 VQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV 459 (1231)
Q Consensus 410 V~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~ 459 (1231)
|.-+.+.+.+.-..++ -+=|.|||-.+..++.++.... ...++|.+|.
T Consensus 178 id~~~~~fkq~~tV~t-aPRqrGKS~iVgi~l~~La~f~-Gi~IlvTAH~ 225 (752)
T PHA03333 178 IDRIFDEYGKCYTAAT-VPRRCGKTTIMAIILAAMISFL-EIDIVVQAQR 225 (752)
T ss_pred HHHHHHHHhhcceEEE-eccCCCcHHHHHHHHHHHHHhc-CCeEEEECCC
Confidence 4445555555544444 5689999988776666554322 3579999994
No 294
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=69.55 E-value=19 Score=44.32 Aligned_cols=36 Identities=22% Similarity=0.015 Sum_probs=25.0
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP 458 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P 458 (1231)
.+.+|.-+.|+|||--+-++...+... ..+++.|..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~--~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES--GGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc--CCCEEEeeH
Confidence 457888899999998877777766543 245555543
No 295
>PRK07952 DNA replication protein DnaC; Validated
Probab=69.53 E-value=35 Score=38.70 Aligned_cols=52 Identities=15% Similarity=0.105 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHH---cC-CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q 044798 404 DYQKVGVQWLWELH---CQ-RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVC 457 (1231)
Q Consensus 404 pyQkegV~wL~el~---~~-~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~ 457 (1231)
+.|..++..+.... .. ..+.+|.-..|+|||..+.+++..+...+ .+++++.
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g--~~v~~it 134 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRG--KSVLIIT 134 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcC--CeEEEEE
Confidence 34555555444321 12 24678999999999999999888876543 4565553
No 296
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=69.33 E-value=74 Score=36.67 Aligned_cols=90 Identities=11% Similarity=0.105 Sum_probs=47.4
Q ss_pred HHHHHHHhhhhc-CCccEEEEeCCcccCCcchHHH---HHHHhcccc-cEEEecccCccCChHHHHHhhhhhcCCC----
Q 044798 544 EQLRLLGEKLLD-VEWGYAVLDEGHRIRNPNAEIS---LVCKQLQTV-HRIIMTGAPIQNKLSELWSLFDFVFPGK---- 614 (1231)
Q Consensus 544 e~Lr~~~~~L~~-~~wd~VILDEAH~IKN~~Sk~s---kalk~L~t~-~RllLTGTPiqNnl~EL~SLl~FL~P~~---- 614 (1231)
..+......+.. ..+++||+|-+=+.-+....+. ..+...... .-++|++|--.+.+.+....|.-+.+..
T Consensus 140 ~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~T 219 (270)
T PRK06731 140 AAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFT 219 (270)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEEE
Confidence 333333333432 3689999999866533222222 222222222 3456889887777777777666554322
Q ss_pred -------CCChhHHHHhhccccccCC
Q 044798 615 -------LGVLPVFEAEFAVPITVGG 633 (1231)
Q Consensus 615 -------lg~~~~F~~~f~~pI~~g~ 633 (1231)
+|..-.+......||..-+
T Consensus 220 KlDet~~~G~~l~~~~~~~~Pi~~it 245 (270)
T PRK06731 220 KFDETASSGELLKIPAVSSAPIVLMT 245 (270)
T ss_pred eecCCCCccHHHHHHHHHCcCEEEEe
Confidence 3333344455555655433
No 297
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=69.04 E-value=20 Score=47.82 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=25.8
Q ss_pred HHHHHHHHHcC--CCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 409 GVQWLWELHCQ--RAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 409 gV~wL~el~~~--~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
-|.++.+..+. ..+.||.-+.|+|||..+-+++..+
T Consensus 181 ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 181 EIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred HHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 36667664443 3577888999999998887766554
No 298
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=68.79 E-value=60 Score=40.94 Aligned_cols=34 Identities=15% Similarity=0.173 Sum_probs=22.4
Q ss_pred EEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q 044798 424 IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVC 457 (1231)
Q Consensus 424 ILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~ 457 (1231)
+|.-..|.|||..+..++..+...+..+.+.+|.
T Consensus 354 aLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 354 ALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 4556799999998877766554443334565554
No 299
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.65 E-value=31 Score=42.84 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=20.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhh
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
.|+.-+.|+|||..|-+++..+..
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcc
Confidence 589999999999998888777653
No 300
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=68.57 E-value=31 Score=41.36 Aligned_cols=43 Identities=16% Similarity=0.143 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHcCCC---cEEEEeCCCchHHHHHHHHHHHHhhcC
Q 044798 406 QKVGVQWLWELHCQRA---GGIIGDEMGLGKTIQVLSFLGALHFSN 448 (1231)
Q Consensus 406 QkegV~wL~el~~~~~---GgILADEMGLGKTIqaIA~L~~L~~s~ 448 (1231)
|..++..+...+..++ .-++.-..|+|||..+.+|+..+....
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~ 69 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATP 69 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCC
Confidence 5566666655554432 457899999999999999999987643
No 301
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=68.53 E-value=85 Score=38.15 Aligned_cols=73 Identities=12% Similarity=0.124 Sum_probs=45.2
Q ss_pred EEEeCHHHHHHHHhhhhcCCccEEEEeCCc-ccCCcchHHHHHHHhc----ccccEEEecccCccCChHHHHHhhhhhcC
Q 044798 538 LLITTYEQLRLLGEKLLDVEWGYAVLDEGH-RIRNPNAEISLVCKQL----QTVHRIIMTGAPIQNKLSELWSLFDFVFP 612 (1231)
Q Consensus 538 VvItTYe~Lr~~~~~L~~~~wd~VILDEAH-~IKN~~Sk~skalk~L----~t~~RllLTGTPiqNnl~EL~SLl~FL~P 612 (1231)
.++.++.-|......+.. .|+|.+|=+= .-+|.. .+...-.-+ .-..-|.||+|-=.+.+.+++..|.++..
T Consensus 264 ~vv~~~~el~~ai~~l~~--~d~ILVDTaGrs~~D~~-~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i 340 (407)
T COG1419 264 EVVYSPKELAEAIEALRD--CDVILVDTAGRSQYDKE-KIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPI 340 (407)
T ss_pred EEecCHHHHHHHHHHhhc--CCEEEEeCCCCCccCHH-HHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCc
Confidence 455666666666665554 4889998653 333322 222211111 22344789999989999999999988755
Q ss_pred C
Q 044798 613 G 613 (1231)
Q Consensus 613 ~ 613 (1231)
.
T Consensus 341 ~ 341 (407)
T COG1419 341 D 341 (407)
T ss_pred c
Confidence 3
No 302
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=68.46 E-value=28 Score=48.91 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=43.0
Q ss_pred hhhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhh--cCCCCcEEEEeCCcchH
Q 044798 397 SIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF--SNMYKPSIVVCPVTLLR 463 (1231)
Q Consensus 397 ~i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~--s~~~kpvLIV~P~sLl~ 463 (1231)
.+...|-+-|+++|.-++. ....-++|---.|+|||.++-+++..+.. ......++.++|..-.-
T Consensus 831 ~~~~~Lt~~Qr~Av~~iLt--s~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa 897 (1623)
T PRK14712 831 ELMEKLTSGQRAATRMILE--TSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAV 897 (1623)
T ss_pred hhhcccCHHHHHHHHHHHh--CCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHH
Confidence 3445789999999987643 34456778888999999886555544322 12234577788965443
No 303
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=68.02 E-value=28 Score=49.49 Aligned_cols=65 Identities=15% Similarity=0.186 Sum_probs=43.2
Q ss_pred hhhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhh--cCCCCcEEEEeCCcchH
Q 044798 397 SIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF--SNMYKPSIVVCPVTLLR 463 (1231)
Q Consensus 397 ~i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~--s~~~kpvLIV~P~sLl~ 463 (1231)
.+...|-+-|+++|..+.. ....-.+|---.|+|||.++-+++..+.. ......++.++|..-.-
T Consensus 963 ~~~~~Lt~~Q~~Av~~il~--s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAA 1029 (1747)
T PRK13709 963 ELMEGLTSGQRAATRMILE--STDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAV 1029 (1747)
T ss_pred HhcCCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHH
Confidence 3344688999999988754 33456778888999999886655554432 11224577788965433
No 304
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.71 E-value=52 Score=41.07 Aligned_cols=42 Identities=24% Similarity=0.142 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHcCC---CcEEEEeCCCchHHHHHHHHHHHHhhc
Q 044798 406 QKVGVQWLWELHCQR---AGGIIGDEMGLGKTIQVLSFLGALHFS 447 (1231)
Q Consensus 406 QkegV~wL~el~~~~---~GgILADEMGLGKTIqaIA~L~~L~~s 447 (1231)
|...++.|...+..+ ..-|+.-..|+|||-.|..+..++.+.
T Consensus 18 Qe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 18 QDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 334444443333332 356889999999999988887777543
No 305
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=67.67 E-value=23 Score=46.49 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=20.1
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
...+.||.-+.|+|||..+-++...+
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999998876665443
No 306
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=67.45 E-value=32 Score=46.16 Aligned_cols=96 Identities=14% Similarity=0.073 Sum_probs=71.5
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEE
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIA----SGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIF 817 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~----~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~Vf 817 (1231)
+..+||..+.+..+-.....|.+++|.+.++..+.-+...+.. .++++..++|.++..++..++..+..+ .+.|+
T Consensus 480 dTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g-~~dIV 558 (926)
T TIGR00580 480 DVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASG-KIDIL 558 (926)
T ss_pred CCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcC-CceEE
Confidence 4578998876654444445678999999999887766665544 467888999999999999999999876 56776
Q ss_pred EEeccccccccCCCCCCEEEE
Q 044798 818 ILTTKVGGLGTNLTGANRVII 838 (1231)
Q Consensus 818 LlSTkvGg~GLNLt~AnrVIi 838 (1231)
+.|.......+.+.....||+
T Consensus 559 IGTp~ll~~~v~f~~L~llVI 579 (926)
T TIGR00580 559 IGTHKLLQKDVKFKDLGLLII 579 (926)
T ss_pred EchHHHhhCCCCcccCCEEEe
Confidence 666655566677777777666
No 307
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=67.42 E-value=18 Score=44.38 Aligned_cols=39 Identities=21% Similarity=0.085 Sum_probs=29.3
Q ss_pred CCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHH
Q 044798 429 MGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKR 467 (1231)
Q Consensus 429 MGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~ 467 (1231)
.|+|||+....=++.+|..++..+++|-|=+ +|..+...
T Consensus 185 AGSGKT~~La~Kaa~lh~knPd~~I~~Tfftk~L~s~~r~ 224 (660)
T COG3972 185 AGSGKTELLAHKAAELHSKNPDSRIAFTFFTKILASTMRT 224 (660)
T ss_pred cCCCchhHHHHHHHHHhcCCCCceEEEEeehHHHHHHHHH
Confidence 6999999877777778888888899999985 33334333
No 308
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.34 E-value=42 Score=42.86 Aligned_cols=42 Identities=21% Similarity=0.135 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcCCC--cE-EEEeCCCchHHHHHHHHHHHHhh
Q 044798 405 YQKVGVQWLWELHCQRA--GG-IIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 405 yQkegV~wL~el~~~~~--Gg-ILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
.|...+.+|...+..+. .. |+.-+.|+|||..+.+|+..+..
T Consensus 20 Gq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c 64 (585)
T PRK14950 20 GQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNC 64 (585)
T ss_pred CCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 45666666655544443 22 78999999999999988877753
No 309
>PF12157 DUF3591: Protein of unknown function (DUF3591); InterPro: IPR022591 This functionally uncharacterised domain is found centrally in the eukaryotic transcription initiation factor TFIID subunit 1.
Probab=66.82 E-value=9.7 Score=46.73 Aligned_cols=49 Identities=27% Similarity=0.401 Sum_probs=39.4
Q ss_pred cCCCCChHHHHHHhcccCCCCChHHHHHHHHhhhccccCCC-CCceeeccCCCC
Q 044798 1179 RGGSSNSACIVEHFKDRVPSKDLPLFKNLLKEIATLQKDPS-GSRWVLKLNFVF 1231 (1231)
Q Consensus 1179 ~~~~~~t~~~~~~f~~~~~~~~~~~f~~~l~~~~~~~~~~~-~~~w~lk~~~~~ 1231 (1231)
......-++|..+|- . ..-.-.|.-||+.|.|+|.+. .+.|+|||.|++
T Consensus 255 ~~~ri~~~di~~~Fp-~---~se~~iRkrLKe~~~~~R~g~~~~~W~lk~~~~l 304 (457)
T PF12157_consen 255 QPRRIKVDDIKKHFP-D---QSESQIRKRLKEFADFQRTGDDSGWWVLKPGFRL 304 (457)
T ss_pred cCCccCHHHHHHhCC-C---CcHHHHHHHHHHHHhccCCCCCCCeEEECCCCCC
Confidence 344789999999992 2 334567999999999999875 589999999864
No 310
>PRK05642 DNA replication initiation factor; Validated
Probab=66.76 E-value=49 Score=36.99 Aligned_cols=37 Identities=14% Similarity=0.293 Sum_probs=23.7
Q ss_pred ccEEEEeCCcccCCcch---HHHHHHHhcc-cccEEEeccc
Q 044798 558 WGYAVLDEGHRIRNPNA---EISLVCKQLQ-TVHRIIMTGA 594 (1231)
Q Consensus 558 wd~VILDEAH~IKN~~S---k~skalk~L~-t~~RllLTGT 594 (1231)
.+++|||+.|.+.+... ..+..+..+. ...++++|+|
T Consensus 98 ~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~ 138 (234)
T PRK05642 98 YELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAAS 138 (234)
T ss_pred CCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCC
Confidence 47899999998865432 2334444443 3466888876
No 311
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=66.56 E-value=55 Score=38.71 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHHHHHcCCC---cEEEEeCCCchHHHHHHHHHHHHhhcC
Q 044798 402 LFDYQKVGVQWLWELHCQRA---GGIIGDEMGLGKTIQVLSFLGALHFSN 448 (1231)
Q Consensus 402 L~pyQkegV~wL~el~~~~~---GgILADEMGLGKTIqaIA~L~~L~~s~ 448 (1231)
+||.|...-+-+...+..++ .-++.-+.|+||+..|.+|...+....
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~ 52 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQT 52 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCC
Confidence 57888877777776665543 345789999999999999999887643
No 312
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=66.41 E-value=42 Score=39.81 Aligned_cols=47 Identities=11% Similarity=0.074 Sum_probs=37.0
Q ss_pred hchHHHHHHHHHHHHHHcCCC---cEEEEeCCCchHHHHHHHHHHHHhhc
Q 044798 401 NLFDYQKVGVQWLWELHCQRA---GGIIGDEMGLGKTIQVLSFLGALHFS 447 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~---GgILADEMGLGKTIqaIA~L~~L~~s 447 (1231)
.+||+|...-+.+...+..++ .-++.-+.|+||+..|.+|..++...
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~ 51 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQ 51 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCC
Confidence 367888888877777665543 34689999999999999999998764
No 313
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.40 E-value=39 Score=42.71 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHcCCC---cEEEEeCCCchHHHHHHHHHHHHhh
Q 044798 406 QKVGVQWLWELHCQRA---GGIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 406 QkegV~wL~el~~~~~---GgILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
|...+..|......+. .-|+.-+.|+|||..+..++..+..
T Consensus 21 q~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 21 QQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3444444444444433 3478999999999999988887764
No 314
>CHL00095 clpC Clp protease ATP binding subunit
Probab=66.13 E-value=16 Score=48.33 Aligned_cols=26 Identities=23% Similarity=0.290 Sum_probs=20.6
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
...+.||.-+.|+|||..+-++...+
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34578999999999998877666554
No 315
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=64.88 E-value=42 Score=43.97 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=38.2
Q ss_pred CEEEeCHHHHHHHHhhhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccE----EEecccCccCChHH
Q 044798 537 GLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHR----IIMTGAPIQNKLSE 602 (1231)
Q Consensus 537 ~VvItTYe~Lr~~~~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~R----llLTGTPiqNnl~E 602 (1231)
-++.+|-+.+......- ......+|+||.|..--..--..+.+..+...++ +++++|-=..-+..
T Consensus 474 ~i~fctvgvllr~~e~g-lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdTd~f~~ 542 (1282)
T KOG0921|consen 474 SIMFCTVGVLLRMMENG-LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDTDLFTN 542 (1282)
T ss_pred ceeeeccchhhhhhhhc-ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccchhhhhh
Confidence 46667777665554432 2356789999999653333334455555544443 77888864433333
No 316
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=64.73 E-value=39 Score=41.52 Aligned_cols=35 Identities=14% Similarity=0.032 Sum_probs=24.7
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP 458 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P 458 (1231)
-.+++-..|+|||.++..++..+...+ .++++|+.
T Consensus 97 vI~lvG~~GsGKTTtaakLA~~L~~~g--~kV~lV~~ 131 (437)
T PRK00771 97 TIMLVGLQGSGKTTTAAKLARYFKKKG--LKVGLVAA 131 (437)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEecC
Confidence 356788999999999888777665432 45555554
No 317
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=64.36 E-value=58 Score=38.34 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=22.5
Q ss_pred EEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC
Q 044798 425 IGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP 458 (1231)
Q Consensus 425 LADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P 458 (1231)
+.-..|.|||.++..+...+... .+.++|++-
T Consensus 119 lvGpnGsGKTTt~~kLA~~l~~~--g~~V~Li~~ 150 (318)
T PRK10416 119 VVGVNGVGKTTTIGKLAHKYKAQ--GKKVLLAAG 150 (318)
T ss_pred EECCCCCcHHHHHHHHHHHHHhc--CCeEEEEec
Confidence 44599999999887777666533 356777664
No 318
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=63.88 E-value=78 Score=33.16 Aligned_cols=34 Identities=21% Similarity=0.168 Sum_probs=23.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEE-EEeC
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSI-VVCP 458 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvL-IV~P 458 (1231)
.++.-..|.|||..+..++..+...+ .+++ |-|+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g--~~v~~i~~D 37 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKG--KKVLLVAAD 37 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CcEEEEEcC
Confidence 35677899999999888887765442 3444 4444
No 319
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=63.87 E-value=24 Score=38.71 Aligned_cols=54 Identities=17% Similarity=0.154 Sum_probs=32.2
Q ss_pred EEEeCHHHHHHHHhhhhc-CCccEEEEeCCcccCCcchHHHHHHHhccc--ccEEEeccc
Q 044798 538 LLITTYEQLRLLGEKLLD-VEWGYAVLDEGHRIRNPNAEISLVCKQLQT--VHRIIMTGA 594 (1231)
Q Consensus 538 VvItTYe~Lr~~~~~L~~-~~wd~VILDEAH~IKN~~Sk~skalk~L~t--~~RllLTGT 594 (1231)
++|-+-..+..+...... ...+.|++||||-+.. .+-..+..+-. ..++++.|.
T Consensus 62 ~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF~~~---~~v~~l~~lad~lgi~Vi~~GL 118 (201)
T COG1435 62 VVIPSDTDIFDEIAALHEKPPVDCVLIDEAQFFDE---ELVYVLNELADRLGIPVICYGL 118 (201)
T ss_pred eecCChHHHHHHHHhcccCCCcCEEEEehhHhCCH---HHHHHHHHHHhhcCCEEEEecc
Confidence 455555555555544432 2378999999999843 44445555533 466666663
No 320
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=63.60 E-value=54 Score=41.83 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=39.9
Q ss_pred chHHHHHHHHHHHHH--------HcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC-CcchHHHHHHHHH
Q 044798 402 LFDYQKVGVQWLWEL--------HCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP-VTLLRQWKREAEK 471 (1231)
Q Consensus 402 L~pyQkegV~wL~el--------~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P-~sLl~QW~~E~~k 471 (1231)
|+.-=.++|.|..+. ....+|.+|.-+.|+|||+.|=++.... +..++-++ +.|+.-|..|=++
T Consensus 442 lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~------~~nFlsvkgpEL~sk~vGeSEr 514 (693)
T KOG0730|consen 442 LKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA------GMNFLSVKGPELFSKYVGESER 514 (693)
T ss_pred HHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh------cCCeeeccCHHHHHHhcCchHH
Confidence 444445667776542 2345788999999999999877665432 23334344 5666677555443
No 321
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=63.08 E-value=39 Score=43.39 Aligned_cols=42 Identities=21% Similarity=0.124 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHcCC---CcEEEEeCCCchHHHHHHHHHHHHhh
Q 044798 405 YQKVGVQWLWELHCQR---AGGIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 405 yQkegV~wL~el~~~~---~GgILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
.|...+..|......+ ..-|+.-..|+|||..|..|...+..
T Consensus 20 GQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 20 AQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred CcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4666666666554443 23568999999999999999888765
No 322
>PRK10689 transcription-repair coupling factor; Provisional
Probab=63.07 E-value=41 Score=46.20 Aligned_cols=96 Identities=11% Similarity=0.063 Sum_probs=70.2
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEE
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIA----SGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIF 817 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~----~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~Vf 817 (1231)
+..+||..+.+..+-.....|.+++|-+.++..+.-+...+.. .++.+..+.|..+..++..++....++ .+.|+
T Consensus 629 ~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g-~~dIV 707 (1147)
T PRK10689 629 DVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEG-KIDIL 707 (1147)
T ss_pred CCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhC-CCCEE
Confidence 3468999866554444445688999999998887666555543 356788899999999999999988765 56777
Q ss_pred EEeccccccccCCCCCCEEEE
Q 044798 818 ILTTKVGGLGTNLTGANRVII 838 (1231)
Q Consensus 818 LlSTkvGg~GLNLt~AnrVIi 838 (1231)
+.|.......+++.....||+
T Consensus 708 VgTp~lL~~~v~~~~L~lLVI 728 (1147)
T PRK10689 708 IGTHKLLQSDVKWKDLGLLIV 728 (1147)
T ss_pred EECHHHHhCCCCHhhCCEEEE
Confidence 776666555667777777666
No 323
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=63.04 E-value=90 Score=38.29 Aligned_cols=88 Identities=7% Similarity=0.093 Sum_probs=50.3
Q ss_pred hhhcCCccEEEEeCCcccCCcchHHHHH---HHhc----ccccEEEecccCccCChHHHHHhhhhhcCCC----------
Q 044798 552 KLLDVEWGYAVLDEGHRIRNPNAEISLV---CKQL----QTVHRIIMTGAPIQNKLSELWSLFDFVFPGK---------- 614 (1231)
Q Consensus 552 ~L~~~~wd~VILDEAH~IKN~~Sk~ska---lk~L----~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~---------- 614 (1231)
.+....+++||+|=+-+.-.....+... +..+ ....-++|++|-=++.+.+.+..+..+.+..
T Consensus 294 ~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~ 373 (432)
T PRK12724 294 TLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEAD 373 (432)
T ss_pred HHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCC
Confidence 3444578999999766552222222222 2211 1234577999988878888877776665432
Q ss_pred -CCChhHHHHhhccccccCCCCCCCh
Q 044798 615 -LGVLPVFEAEFAVPITVGGYANASP 639 (1231)
Q Consensus 615 -lg~~~~F~~~f~~pI~~g~~~~as~ 639 (1231)
+|..-.+...+..||..-+....-+
T Consensus 374 ~~G~il~i~~~~~lPI~ylt~GQ~VP 399 (432)
T PRK12724 374 FLGSFLELADTYSKSFTYLSVGQEVP 399 (432)
T ss_pred CccHHHHHHHHHCCCEEEEecCCCCC
Confidence 3444455566677776544443333
No 324
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=62.79 E-value=48 Score=36.95 Aligned_cols=50 Identities=10% Similarity=0.036 Sum_probs=32.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhh----------cCCCCcEEEEeC---CcchHHHHHHHHHH
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHF----------SNMYKPSIVVCP---VTLLRQWKREAEKW 472 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~----------s~~~kpvLIV~P---~sLl~QW~~E~~kw 472 (1231)
++|+...|+|||.-++.++.++.. ....+++|+++- ...+.+-...+...
T Consensus 4 ~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~~Rl~~i~~~ 66 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIHRRLEAILQH 66 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHHHHHHHHHhh
Confidence 788999999999998888766531 123467888884 34444444444433
No 325
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=62.25 E-value=55 Score=36.54 Aligned_cols=43 Identities=12% Similarity=-0.011 Sum_probs=31.0
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQ 464 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~Q 464 (1231)
+.-.++.-+.|+|||.-++.++..+...+ .+++.|+......+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g--~~~~yi~~e~~~~~ 66 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSTQLTTTE 66 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEEeCCCCHHH
Confidence 34467889999999999888888765433 67888887543333
No 326
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.98 E-value=58 Score=41.76 Aligned_cols=39 Identities=21% Similarity=0.146 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCC---CcEEEEeCCCchHHHHHHHHHHHHhh
Q 044798 408 VGVQWLWELHCQR---AGGIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 408 egV~wL~el~~~~---~GgILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
..+..|......+ ..-|+.-+.|+|||..|..|...+..
T Consensus 23 ~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C 64 (624)
T PRK14959 23 TVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNC 64 (624)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccc
Confidence 3344444433333 24567999999999999988887754
No 327
>PRK06835 DNA replication protein DnaC; Validated
Probab=61.94 E-value=61 Score=38.38 Aligned_cols=41 Identities=20% Similarity=0.092 Sum_probs=29.1
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcc
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTL 461 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sL 461 (1231)
...+.+|.-++|+|||..+.+++..+...+ ..++.+.-..+
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g--~~V~y~t~~~l 222 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRG--KSVIYRTADEL 222 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCC--CeEEEEEHHHH
Confidence 456778889999999999988888876543 34544433333
No 328
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=61.69 E-value=19 Score=37.92 Aligned_cols=48 Identities=25% Similarity=0.198 Sum_probs=36.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHH
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKW 472 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw 472 (1231)
.++.-+.|+|||.-++.|+...... ..++++|+......+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--GEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCCCHHHHHHHHHHc
Confidence 3678899999999999888776533 47899999877777766666554
No 329
>PRK10865 protein disaggregation chaperone; Provisional
Probab=61.05 E-value=41 Score=44.95 Aligned_cols=35 Identities=17% Similarity=0.230 Sum_probs=25.4
Q ss_pred HHHHHHHHc--CCCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 410 VQWLWELHC--QRAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 410 V~wL~el~~--~~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
|..+++..+ ...+.||.-+.|+|||..+-++...+
T Consensus 187 i~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 187 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred HHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 666665433 34578899999999998887766654
No 330
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=60.92 E-value=34 Score=39.45 Aligned_cols=36 Identities=14% Similarity=0.173 Sum_probs=24.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP 458 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P 458 (1231)
.+++-..|+|||.++..++..+.......++.||+-
T Consensus 197 i~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~ 232 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITT 232 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEEC
Confidence 346778999999998888777654422245655554
No 331
>PRK04195 replication factor C large subunit; Provisional
Probab=60.85 E-value=78 Score=39.36 Aligned_cols=25 Identities=16% Similarity=0.198 Sum_probs=20.1
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
....+|.-+.|+|||..+-+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999998877766544
No 332
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.71 E-value=63 Score=40.33 Aligned_cols=42 Identities=21% Similarity=0.124 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHcCCC--cE-EEEeCCCchHHHHHHHHHHHHhh
Q 044798 405 YQKVGVQWLWELHCQRA--GG-IIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 405 yQkegV~wL~el~~~~~--Gg-ILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
-|...+..+......+. .+ ++.-+.|.|||..+..+...+..
T Consensus 20 Gq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 20 GQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34555555544444332 33 67999999999998888777653
No 333
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=60.54 E-value=57 Score=38.30 Aligned_cols=34 Identities=26% Similarity=0.321 Sum_probs=27.1
Q ss_pred HHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 411 QWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 411 ~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
.+||.....+...|++-++|+|||....+++..+
T Consensus 134 ayL~~~ie~~~siii~G~t~sGKTt~lnall~~I 167 (312)
T COG0630 134 AYLWLAIEARKSIIICGGTASGKTTLLNALLDFI 167 (312)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhC
Confidence 3367777788999999999999998877666543
No 334
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=60.19 E-value=47 Score=34.41 Aligned_cols=56 Identities=21% Similarity=0.287 Sum_probs=37.6
Q ss_pred EEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCC--CCEEEEcCCCC-Ccc
Q 044798 789 YRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTG--ANRVIIFDPDW-NPS 846 (1231)
Q Consensus 789 ~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~--AnrVIi~Dp~W-NPs 846 (1231)
.+.+.|. ...+...+++.|...... .+|+++....+|+|+++ +..||+.-.|+ ||.
T Consensus 25 ~i~~e~~-~~~~~~~~l~~f~~~~~~-~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~ 83 (141)
T smart00492 25 LLLVQGE-DGKETGKLLEKYVEACEN-AILLATARFSEGVDFPGDYLRAVIIDGLPFPYPD 83 (141)
T ss_pred eEEEeCC-ChhHHHHHHHHHHHcCCC-EEEEEccceecceecCCCCeeEEEEEecCCCCCC
Confidence 3344443 334578899999875322 45666666999999985 67788888665 454
No 335
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=60.04 E-value=52 Score=40.69 Aligned_cols=47 Identities=26% Similarity=0.263 Sum_probs=34.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHH
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEK 471 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~k 471 (1231)
.+|+-++|.|||..++.++..+... .+++|.|..-.-..|+.....+
T Consensus 97 ilI~G~pGsGKTTL~lq~a~~~a~~--g~kvlYvs~EEs~~qi~~ra~r 143 (454)
T TIGR00416 97 ILIGGDPGIGKSTLLLQVACQLAKN--QMKVLYVSGEESLQQIKMRAIR 143 (454)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEECcCCHHHHHHHHHH
Confidence 4789999999999988887766543 3589999887666676554444
No 336
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=59.95 E-value=96 Score=34.98 Aligned_cols=50 Identities=14% Similarity=-0.050 Sum_probs=33.9
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAE 470 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~ 470 (1231)
+.-.+|+...|+|||..++.++..+... ...+++++.--.-..++...+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~-~g~~vl~iS~E~~~~~~~~r~~ 79 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQ-HGVRVGTISLEEPVVRTARRLL 79 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHh-cCceEEEEEcccCHHHHHHHHH
Confidence 3446889999999999888887665432 1367888887554445444443
No 337
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=59.87 E-value=1.3e+02 Score=38.73 Aligned_cols=104 Identities=19% Similarity=0.179 Sum_probs=74.9
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEecc----HHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEE
Q 044798 744 RSEKMKVVAQVLKVWKDQGHRVLLFAQT----QQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFIL 819 (1231)
Q Consensus 744 ~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~----~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLl 819 (1231)
.|||..+..--+-.....|..+.+-..+ .+..+-+..+|...|+.+..++|++..++|.++.++..++ .+.++ +
T Consensus 293 GSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G-~~~iv-V 370 (677)
T COG1200 293 GSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASG-EIDIV-V 370 (677)
T ss_pred CCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCC-CCCEE-E
Confidence 5788765433333334667788888876 4567788889998999999999999999999999999988 56664 4
Q ss_pred ecccc-ccccCCCCCCEEEEcCCCCCcchHHHHHHhHHh
Q 044798 820 TTKVG-GLGTNLTGANRVIIFDPDWNPSTDVQARERAWR 857 (1231)
Q Consensus 820 STkvG-g~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~R 857 (1231)
-|.+. -..+++...-.||+ ++.||.|=.-|
T Consensus 371 GTHALiQd~V~F~~LgLVIi--------DEQHRFGV~QR 401 (677)
T COG1200 371 GTHALIQDKVEFHNLGLVII--------DEQHRFGVHQR 401 (677)
T ss_pred EcchhhhcceeecceeEEEE--------eccccccHHHH
Confidence 55554 66777777666664 34555554444
No 338
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=59.67 E-value=55 Score=42.91 Aligned_cols=26 Identities=19% Similarity=0.236 Sum_probs=20.6
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHh
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~ 445 (1231)
..+.||.-+.|+|||..+-++...+.
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999988776665553
No 339
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=59.46 E-value=1.1e+02 Score=42.57 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=56.0
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHH----HcCCcEE---EEeCCCCHHHHHHHHHHHhCCCCc
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLI----ASGYEYR---RMDGLTPVKQRMALIDEYNNSSDV 814 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~----~~Gi~~~---rIdGsts~~eRq~iId~Fn~d~~i 814 (1231)
+..+||...+.-++..+...+.++||.+.++..+.-+...+. ..|+... .++|.++..++...++.+.++ ++
T Consensus 101 pTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~-~~ 179 (1171)
T TIGR01054 101 PTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENG-DF 179 (1171)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcC-CC
Confidence 457888876555554445567899999999887666555444 3455544 478999999998888888875 34
Q ss_pred eEEEEecc
Q 044798 815 FIFILTTK 822 (1231)
Q Consensus 815 ~VfLlSTk 822 (1231)
.|++.|+.
T Consensus 180 dIlV~Tp~ 187 (1171)
T TIGR01054 180 DILITTTM 187 (1171)
T ss_pred CEEEECHH
Confidence 66655543
No 340
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=59.40 E-value=14 Score=39.67 Aligned_cols=48 Identities=13% Similarity=0.027 Sum_probs=32.1
Q ss_pred cCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHH
Q 044798 418 CQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEK 471 (1231)
Q Consensus 418 ~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~k 471 (1231)
..+.|.+|.-.+|.|||..+++++..+... ..+++++. ...+.++++.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~--g~~v~f~~----~~~L~~~l~~ 92 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK--GYSVLFIT----ASDLLDELKQ 92 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEE----HHHHHHHHHC
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC--CcceeEee----cCceeccccc
Confidence 456788888999999999999998877663 35666664 3445555543
No 341
>PRK14873 primosome assembly protein PriA; Provisional
Probab=58.85 E-value=43 Score=43.34 Aligned_cols=132 Identities=17% Similarity=0.057 Sum_probs=86.9
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc-C-CcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEec
Q 044798 744 RSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS-G-YEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTT 821 (1231)
Q Consensus 744 ~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~-G-i~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlST 821 (1231)
.|+|.++.++++......|..+||..........+...|+.. | ..+..+|+.++..+|........++ ...| ++-|
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G-~~~I-ViGt 247 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRG-QARV-VVGT 247 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCC-CCcE-EEEc
Confidence 589999999999999999999999999888888887777755 4 6799999999999999998888877 4555 4455
Q ss_pred cccccccCCCCCCEEEEcCC-CCCcc----hHHHHHHhHHhhCCcccEEEEEEEeCCCHHHH
Q 044798 822 KVGGLGTNLTGANRVIIFDP-DWNPS----TDVQARERAWRIGQKQDVTVYRLITRGTIEEK 878 (1231)
Q Consensus 822 kvGg~GLNLt~AnrVIi~Dp-~WNPs----~d~QAigRa~RiGQkk~V~VYRLit~gTIEEk 878 (1231)
+.+- =+-+..-..||+.|- +.+.. -+.++++=+...++...+.+.---..-|+|..
T Consensus 248 RSAv-FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 248 RSAV-FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred ceeE-EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHH
Confidence 5431 122223334555432 22111 12345544444444444555433344567654
No 342
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=58.76 E-value=95 Score=39.48 Aligned_cols=25 Identities=24% Similarity=0.230 Sum_probs=20.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhc
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFS 447 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s 447 (1231)
-|+.-+.|+|||..+-.|...+...
T Consensus 41 yLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 41 YLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Confidence 3679999999999998888777543
No 343
>CHL00176 ftsH cell division protein; Validated
Probab=58.60 E-value=51 Score=42.56 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=19.6
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGA 443 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~ 443 (1231)
..|.+|.-+.|+|||..+=++...
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e 239 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGE 239 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468899999999999987766543
No 344
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=58.47 E-value=31 Score=37.67 Aligned_cols=59 Identities=22% Similarity=0.209 Sum_probs=37.8
Q ss_pred HHhhhhcCCccEEEEeCCcccCCc----chHHHHHHHhcccccEEEecccCccCChHHHHHhhhhh
Q 044798 549 LGEKLLDVEWGYAVLDEGHRIRNP----NAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFV 610 (1231)
Q Consensus 549 ~~~~L~~~~wd~VILDEAH~IKN~----~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL 610 (1231)
....+....|++|||||.-..-+. ...+...+..-...--++|||- |-+.+|..+.|++
T Consensus 107 a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR---~~p~~Lie~ADlV 169 (191)
T PRK05986 107 AKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGR---GAPRELIEAADLV 169 (191)
T ss_pred HHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECC---CCCHHHHHhCchh
Confidence 344566778999999998655442 2344455544444557999997 4455566655554
No 345
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.24 E-value=93 Score=39.29 Aligned_cols=42 Identities=21% Similarity=0.097 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCC---CcEEEEeCCCchHHHHHHHHHHHHhh
Q 044798 405 YQKVGVQWLWELHCQR---AGGIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 405 yQkegV~wL~el~~~~---~GgILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
.|...+..+......+ ..-|+.-+.|+|||..+-.|+..+..
T Consensus 20 Gq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 20 GQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred CcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3444444444433332 23478999999999999888877754
No 346
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=57.80 E-value=25 Score=45.89 Aligned_cols=68 Identities=15% Similarity=0.046 Sum_probs=48.1
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcC--CCCcEEEEeCC-cchHHHHHHHHHHc
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN--MYKPSIVVCPV-TLLRQWKREAEKWY 473 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~--~~kpvLIV~P~-sLl~QW~~E~~kw~ 473 (1231)
..|-|-|+++|.+ ..+.+++....|+|||.+.+.-+++|.... ....+|+|+.+ .....-..-+.+..
T Consensus 3 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~ 73 (715)
T TIGR01075 3 DGLNDKQREAVAA------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALL 73 (715)
T ss_pred cccCHHHHHHHcC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHh
Confidence 3588999999963 235677888899999999999888887643 34568888884 33334444455444
No 347
>PRK08939 primosomal protein DnaI; Reviewed
Probab=57.68 E-value=67 Score=37.63 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=44.1
Q ss_pred HHHHHHHHHc--CCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHH--------HHHHcCCCeE
Q 044798 409 GVQWLWELHC--QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKRE--------AEKWYPSFHV 478 (1231)
Q Consensus 409 gV~wL~el~~--~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E--------~~kw~p~lrV 478 (1231)
+..|+-.... .+.|.+|.-.+|+|||..+.|++..+...+ .++++|.-+.++...... +.+.+....+
T Consensus 143 ~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g--~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dl 220 (306)
T PRK08939 143 ALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKG--VSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPV 220 (306)
T ss_pred HHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCE
Confidence 4666643222 345677888999999999998888876433 455555444444443322 2222345556
Q ss_pred EEEeccc
Q 044798 479 ELLHDSA 485 (1231)
Q Consensus 479 ~il~gs~ 485 (1231)
.++..-+
T Consensus 221 LiIDDiG 227 (306)
T PRK08939 221 LMLDDIG 227 (306)
T ss_pred EEEecCC
Confidence 6665443
No 348
>PRK06893 DNA replication initiation factor; Validated
Probab=57.61 E-value=46 Score=36.98 Aligned_cols=23 Identities=13% Similarity=-0.080 Sum_probs=18.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHh
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~ 445 (1231)
.+|.-..|+|||--+.++...+.
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~ 64 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYL 64 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 47899999999987766665553
No 349
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=57.58 E-value=30 Score=45.34 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=28.5
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQW 465 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW 465 (1231)
..|.+|.-..|+|||..+-++...+ ..+++.|-+..++..|
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~-----~~~fi~v~~~~l~~~~ 527 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATES-----GANFIAVRGPEILSKW 527 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhc-----CCCEEEEehHHHhhcc
Confidence 4578889999999998877665543 2456666665555554
No 350
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=57.57 E-value=22 Score=41.47 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=26.8
Q ss_pred HHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHh
Q 044798 411 QWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 411 ~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~ 445 (1231)
.+|+.+...+.+.+++-.||+|||-.+-+++..+.
T Consensus 123 ~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 123 DVLREAVLARKNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 55666666777889999999999988776665543
No 351
>PRK06904 replicative DNA helicase; Validated
Probab=57.49 E-value=1.4e+02 Score=37.09 Aligned_cols=52 Identities=15% Similarity=0.049 Sum_probs=38.1
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKW 472 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw 472 (1231)
+.=.|||.-+|+|||.-++.++...... ...|+|+++.-.-..|+...+-..
T Consensus 221 G~LiiIaarPg~GKTafalnia~~~a~~-~g~~Vl~fSlEMs~~ql~~Rlla~ 272 (472)
T PRK06904 221 SDLIIVAARPSMGKTTFAMNLCENAAMA-SEKPVLVFSLEMPAEQIMMRMLAS 272 (472)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHHHHHHHHh
Confidence 3345889999999999887776554322 246899999988888887765543
No 352
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=57.08 E-value=78 Score=35.05 Aligned_cols=49 Identities=16% Similarity=0.139 Sum_probs=34.9
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHH
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKW 472 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw 472 (1231)
-.++..+.|+|||.-+..|+..... ...++++|.=-.-..+..+.+..+
T Consensus 27 ~~~i~G~~GsGKt~l~~~~~~~~~~--~g~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 27 LILIEGDHGTGKSVLSQQFVYGALK--QGKKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHh--CCCEEEEEEcCCCHHHHHHHHHHC
Confidence 3577889999999999988766543 346888888755555665655553
No 353
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=56.92 E-value=72 Score=40.51 Aligned_cols=47 Identities=23% Similarity=0.245 Sum_probs=31.2
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEK 471 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~k 471 (1231)
..|.+|+-..|+|||+.|=|..... .-.++=|-=+.|++.|+-|=++
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEa-----g~NFisVKGPELlNkYVGESEr 591 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEA-----GANFISVKGPELLNKYVGESER 591 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhc-----cCceEeecCHHHHHHHhhhHHH
Confidence 5688999999999999887665432 1123333335677777666554
No 354
>PRK13342 recombination factor protein RarA; Reviewed
Probab=56.80 E-value=66 Score=39.10 Aligned_cols=23 Identities=30% Similarity=0.267 Sum_probs=17.8
Q ss_pred CcEEEEeCCCchHHHHHHHHHHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGA 443 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~ 443 (1231)
...||.-+.|+|||..+-++...
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~ 59 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGA 59 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36788999999999877666543
No 355
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=56.52 E-value=87 Score=40.95 Aligned_cols=42 Identities=29% Similarity=0.169 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCCC--c-EEEEeCCCchHHHHHHHHHHHHhhc
Q 044798 406 QKVGVQWLWELHCQRA--G-GIIGDEMGLGKTIQVLSFLGALHFS 447 (1231)
Q Consensus 406 QkegV~wL~el~~~~~--G-gILADEMGLGKTIqaIA~L~~L~~s 447 (1231)
|...++-|......+. . -|+.-+.|.|||..|-+|+..+...
T Consensus 23 Qe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 23 QDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 4445555544443332 3 4789999999999999888877543
No 356
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=56.40 E-value=37 Score=40.86 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=25.6
Q ss_pred ccEEEEeCCcccCCcchHHHHHHHhccc---ccEEEecccCcc
Q 044798 558 WGYAVLDEGHRIRNPNAEISLVCKQLQT---VHRIIMTGAPIQ 597 (1231)
Q Consensus 558 wd~VILDEAH~IKN~~Sk~skalk~L~t---~~RllLTGTPiq 597 (1231)
++++++|||..+. ......++..++. ..++++|.||-.
T Consensus 102 ~~~~~idEa~~~~--~~~~~~l~~rlr~~~~~~~i~~t~NP~~ 142 (396)
T TIGR01547 102 IAIIWFEEASQLT--FEDIKELIPRLRETGGKKFIIFSSNPES 142 (396)
T ss_pred eeeehhhhhhhcC--HHHHHHHHHHhhccCCccEEEEEcCcCC
Confidence 5899999999983 2344444444542 225899999954
No 357
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=55.98 E-value=1e+02 Score=39.52 Aligned_cols=42 Identities=21% Similarity=0.153 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCC---CcEEEEeCCCchHHHHHHHHHHHHhhc
Q 044798 406 QKVGVQWLWELHCQR---AGGIIGDEMGLGKTIQVLSFLGALHFS 447 (1231)
Q Consensus 406 QkegV~wL~el~~~~---~GgILADEMGLGKTIqaIA~L~~L~~s 447 (1231)
|...+..+......+ ..-|+.-+.|+|||..|.++...+...
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~ 65 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCL 65 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 334444444443332 234689999999999999988887643
No 358
>PRK08181 transposase; Validated
Probab=55.74 E-value=57 Score=37.53 Aligned_cols=58 Identities=14% Similarity=-0.068 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcch
Q 044798 403 FDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLL 462 (1231)
Q Consensus 403 ~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl 462 (1231)
-+.|..++.++-.-...+.+.+|.-..|+|||--+.++...+...+ ..++++.-..++
T Consensus 89 ~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g--~~v~f~~~~~L~ 146 (269)
T PRK08181 89 SKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIENG--WRVLFTRTTDLV 146 (269)
T ss_pred CHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHHcC--CceeeeeHHHHH
Confidence 3445544433311114567789999999999998888877665443 455554433333
No 359
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=54.93 E-value=27 Score=42.21 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=20.6
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
...|.+|.-+.|+|||..+-++...+
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~ 189 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHET 189 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHh
Confidence 35678999999999999887765543
No 360
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=54.86 E-value=94 Score=33.83 Aligned_cols=62 Identities=19% Similarity=0.052 Sum_probs=38.1
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHHcCCCeEEEEec
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHD 483 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw~p~lrV~il~g 483 (1231)
.....+|.-+.|+|||..+.++....... +..++.++...+..|..++........+.++.+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~lLvIDd 98 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEER---GKSAIYLPLAELAQADPEVLEGLEQADLVCLDD 98 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhc---CCcEEEEeHHHHHHhHHHHHhhcccCCEEEEeC
Confidence 34456788999999999988777665432 233455565555555545444444445555554
No 361
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=54.73 E-value=68 Score=30.94 Aligned_cols=57 Identities=14% Similarity=0.162 Sum_probs=42.0
Q ss_pred CCeEEEEec------cHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEE
Q 044798 762 GHRVLLFAQ------TQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFI 818 (1231)
Q Consensus 762 g~KVLVFSQ------~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfL 818 (1231)
.++|+||+. +-.....+..+|...|++|..++=......|+.+........-+.||+
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 469999975 456678899999999999999987766777777666655443345554
No 362
>PRK12377 putative replication protein; Provisional
Probab=54.58 E-value=48 Score=37.63 Aligned_cols=63 Identities=13% Similarity=0.094 Sum_probs=40.6
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHH---------HHHHHcCCCeEEEEecc
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKR---------EAEKWYPSFHVELLHDS 484 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~---------E~~kw~p~lrV~il~gs 484 (1231)
..+.+|.-..|+|||-.+.|++..+...+ ..++++.-..++..... ++.+.+....+.++...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g--~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDl 172 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKG--RSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEI 172 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcC--CCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCC
Confidence 34668888999999999999888886543 45555544555554432 23333455666666544
No 363
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=54.53 E-value=55 Score=40.84 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=42.3
Q ss_pred HHHHHHHhhhhcCCccEEEEeCCcccC---CcchH--HHHHHHhc--------ccccEEEecccCccCChHHHHHhhhhh
Q 044798 544 EQLRLLGEKLLDVEWGYAVLDEGHRIR---NPNAE--ISLVCKQL--------QTVHRIIMTGAPIQNKLSELWSLFDFV 610 (1231)
Q Consensus 544 e~Lr~~~~~L~~~~wd~VILDEAH~IK---N~~Sk--~skalk~L--------~t~~RllLTGTPiqNnl~EL~SLl~FL 610 (1231)
.++|.+...-...-+.+|.+||.+.+- |+... ..+.+.+| +..-.|++-||-....|.- .++
T Consensus 383 rRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~-----AL~ 457 (752)
T KOG0734|consen 383 RRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK-----ALT 457 (752)
T ss_pred HHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH-----Hhc
Confidence 344444444555678899999999883 44433 23444444 5567788999966555443 346
Q ss_pred cCCCCC
Q 044798 611 FPGKLG 616 (1231)
Q Consensus 611 ~P~~lg 616 (1231)
+||+|.
T Consensus 458 RPGRFD 463 (752)
T KOG0734|consen 458 RPGRFD 463 (752)
T ss_pred CCCccc
Confidence 787664
No 364
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.73 E-value=40 Score=41.79 Aligned_cols=97 Identities=8% Similarity=0.175 Sum_probs=75.6
Q ss_pred CeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecccc-ccccCCCCCCEEEEcCC
Q 044798 763 HRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVG-GLGTNLTGANRVIIFDP 841 (1231)
Q Consensus 763 ~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvG-g~GLNLt~AnrVIi~Dp 841 (1231)
.-+|||-.+---.=.|..+++..++.|+.|+--++...-..+-+-|..+ ...|+|.|-++- =.-..+.++..||+|.|
T Consensus 553 s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qg-r~~vlLyTER~hffrR~~ikGVk~vVfYqp 631 (698)
T KOG2340|consen 553 SGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQG-RKSVLLYTERAHFFRRYHIKGVKNVVFYQP 631 (698)
T ss_pred CceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhc-CceEEEEehhhhhhhhheecceeeEEEecC
Confidence 4678887776666778899999999999999888888877888889887 567888876654 34567889999999999
Q ss_pred CCCcchHHHHH---HhHHhhCC
Q 044798 842 DWNPSTDVQAR---ERAWRIGQ 860 (1231)
Q Consensus 842 ~WNPs~d~QAi---gRa~RiGQ 860 (1231)
|-||.-|.--+ +|+--.|.
T Consensus 632 P~~P~FYsEiinm~~k~~~~gn 653 (698)
T KOG2340|consen 632 PNNPHFYSEIINMSDKTTSQGN 653 (698)
T ss_pred CCCcHHHHHHHhhhhhhhccCC
Confidence 99998877554 44444443
No 365
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=53.49 E-value=1.1e+02 Score=37.08 Aligned_cols=43 Identities=16% Similarity=0.149 Sum_probs=28.4
Q ss_pred EEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC----cchHHHHHH
Q 044798 424 IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV----TLLRQWKRE 468 (1231)
Q Consensus 424 ILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~----sLl~QW~~E 468 (1231)
++.-..|+|||-++..+...+...+ .++.+|+-- ..+.||..-
T Consensus 210 ~lvGptGvGKTTt~akLA~~l~~~g--~~V~lItaDtyR~gAveQLk~y 256 (407)
T PRK12726 210 SLIGQTGVGKTTTLVKLGWQLLKQN--RTVGFITTDTFRSGAVEQFQGY 256 (407)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCCccCccHHHHHHHH
Confidence 4667899999998877776654433 466666652 346677543
No 366
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=53.48 E-value=27 Score=41.20 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=26.0
Q ss_pred HHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHh
Q 044798 411 QWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 411 ~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~ 445 (1231)
.+|+.+...+.+.|++-.||+|||-.+-+++..+.
T Consensus 135 ~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 135 SVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 44555555677888999999999988766665553
No 367
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=53.35 E-value=63 Score=41.12 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhc
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFS 447 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s 447 (1231)
-|+.-+.|.|||..+.+++..+...
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhhccc
Confidence 4789999999999999988887643
No 368
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=53.27 E-value=29 Score=42.09 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=20.2
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHH
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGA 443 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~ 443 (1231)
...|.+|.-+.|+|||..+-+++..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 4578899999999999987666543
No 369
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=53.13 E-value=28 Score=38.12 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=26.3
Q ss_pred CccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCC
Q 044798 557 EWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNK 599 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNn 599 (1231)
..+++|+||++.+-. ..+.. +..+.....++|-|=|.|-.
T Consensus 62 ~~~~liiDE~~~~~~--g~l~~-l~~~~~~~~~~l~GDp~Q~~ 101 (234)
T PF01443_consen 62 SYDTLIIDEAQLLPP--GYLLL-LLSLSPAKNVILFGDPLQIP 101 (234)
T ss_pred cCCEEEEeccccCCh--HHHHH-HHhhccCcceEEEECchhcc
Confidence 578999999998732 22222 44444445677889998854
No 370
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=53.08 E-value=51 Score=39.25 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=20.1
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
..|.+|.-+.|+|||..+-++...+
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l 180 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHET 180 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhC
Confidence 4678999999999998887765543
No 371
>PRK04132 replication factor C small subunit; Provisional
Probab=52.75 E-value=69 Score=42.56 Aligned_cols=50 Identities=12% Similarity=0.161 Sum_probs=32.3
Q ss_pred CccEEEEeCCcccCCcchHHHHHHHhc---ccccEEEecccCccCChHHHHHhhh
Q 044798 557 EWGYAVLDEGHRIRNPNAEISLVCKQL---QTVHRIIMTGAPIQNKLSELWSLFD 608 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~~Sk~skalk~L---~t~~RllLTGTPiqNnl~EL~SLl~ 608 (1231)
++.+|||||+|++-. ......++.+ ....+++|+.++...-+.-|-|-+.
T Consensus 630 ~~KVvIIDEaD~Lt~--~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~ 682 (846)
T PRK04132 630 SFKIIFLDEADALTQ--DAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCA 682 (846)
T ss_pred CCEEEEEECcccCCH--HHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhce
Confidence 578999999999942 2222333333 3567889998887665555555443
No 372
>PRK08760 replicative DNA helicase; Provisional
Probab=52.64 E-value=1.3e+02 Score=37.57 Aligned_cols=51 Identities=16% Similarity=-0.038 Sum_probs=39.1
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKW 472 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw 472 (1231)
.=.|||..+|+|||.-++.++...... ...++++++.-.-..||...+...
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~-~g~~V~~fSlEMs~~ql~~Rl~a~ 280 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIK-SKKGVAVFSMEMSASQLAMRLISS 280 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHh-cCCceEEEeccCCHHHHHHHHHHh
Confidence 335889999999999988887665322 235899999988888888776654
No 373
>PRK10867 signal recognition particle protein; Provisional
Probab=52.60 E-value=45 Score=40.94 Aligned_cols=43 Identities=21% Similarity=0.152 Sum_probs=28.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC----cchHHHH
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV----TLLRQWK 466 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~----sLl~QW~ 466 (1231)
.++.-..|+|||.++.-++.++.... ..++++|+=- ....||.
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~~-G~kV~lV~~D~~R~aa~eQL~ 149 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKKK-KKKVLLVAADVYRPAAIEQLK 149 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhc-CCcEEEEEccccchHHHHHHH
Confidence 45678999999999888887776542 3455555542 3445654
No 374
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=52.52 E-value=1.4e+02 Score=31.32 Aligned_cols=53 Identities=17% Similarity=0.205 Sum_probs=35.4
Q ss_pred CCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcC
Q 044798 556 VEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFP 612 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P 612 (1231)
..+|+||+|=...+- .....+..+.....+++..+|-..++.+...+++++..
T Consensus 66 ~~yD~VIiD~pp~~~----~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~ 118 (169)
T cd02037 66 GELDYLVIDMPPGTG----DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKK 118 (169)
T ss_pred CCCCEEEEeCCCCCc----HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHh
Confidence 579999999877652 11122222234466777778888888888888888754
No 375
>PRK09165 replicative DNA helicase; Provisional
Probab=52.20 E-value=1.3e+02 Score=37.68 Aligned_cols=51 Identities=10% Similarity=-0.193 Sum_probs=36.1
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcC-------------CCCcEEEEeCCcchHHHHHHHHHH
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSN-------------MYKPSIVVCPVTLLRQWKREAEKW 472 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~-------------~~kpvLIV~P~sLl~QW~~E~~kw 472 (1231)
=.|||..+|+|||.-++.++....... ...++|++..-.-..|+..-+-..
T Consensus 219 livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~ 282 (497)
T PRK09165 219 LIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSE 282 (497)
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHH
Confidence 368899999999998887776553221 246889998876667766655443
No 376
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=51.04 E-value=76 Score=38.63 Aligned_cols=88 Identities=19% Similarity=0.213 Sum_probs=65.4
Q ss_pred EEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHHcCCCeEEEEecccchhhhhhhhccCCCCCCC
Q 044798 424 IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDND 503 (1231)
Q Consensus 424 ILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw~p~lrV~il~gs~~~~~~~~kr~~~~~~~~~ 503 (1231)
+++-+.|.||+-..+-+++.+..++ ++|.|+=-.-..||+--..+..-
T Consensus 97 LIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEES~~QiklRA~RL~~----------------------------- 144 (456)
T COG1066 97 LIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEESLQQIKLRADRLGL----------------------------- 144 (456)
T ss_pred EEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCcCHHHHHHHHHHhCC-----------------------------
Confidence 6789999999966555555554333 99999999999999887777520
Q ss_pred CCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcCCccEEEEeCCcccCCcc
Q 044798 504 GEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPN 573 (1231)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~~wd~VILDEAH~IKN~~ 573 (1231)
...++.+..+..+......+...+++++|+|=.+.+-++.
T Consensus 145 ------------------------------~~~~l~l~aEt~~e~I~~~l~~~~p~lvVIDSIQT~~s~~ 184 (456)
T COG1066 145 ------------------------------PTNNLYLLAETNLEDIIAELEQEKPDLVVIDSIQTLYSEE 184 (456)
T ss_pred ------------------------------CccceEEehhcCHHHHHHHHHhcCCCEEEEeccceeeccc
Confidence 0124666667777777777888899999999988886544
No 377
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=50.84 E-value=1.2e+02 Score=37.34 Aligned_cols=55 Identities=11% Similarity=0.058 Sum_probs=33.1
Q ss_pred CccEEEEeCCcccCCcchHHHHHHHhcc-----cccEEEecccCccCChHHHHHhhhhhcC
Q 044798 557 EWGYAVLDEGHRIRNPNAEISLVCKQLQ-----TVHRIIMTGAPIQNKLSELWSLFDFVFP 612 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~~Sk~skalk~L~-----t~~RllLTGTPiqNnl~EL~SLl~FL~P 612 (1231)
.+++|++|.+=+.. ........+..|. ...-|+|++|--.+.+.+++..+..+.+
T Consensus 269 ~~d~VLIDTaGrsq-rd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~~~~ 328 (420)
T PRK14721 269 GKHMVLIDTVGMSQ-RDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQGHGI 328 (420)
T ss_pred CCCEEEecCCCCCc-chHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcCCCC
Confidence 56788888863322 2223333444442 1334779999888888887777766544
No 378
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=50.78 E-value=1.3e+02 Score=35.87 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=33.2
Q ss_pred chHHHHHHHHHHHHHHcCC-CcEEEEeCCCchHHHHHHHHHHHHhhcC
Q 044798 402 LFDYQKVGVQWLWELHCQR-AGGIIGDEMGLGKTIQVLSFLGALHFSN 448 (1231)
Q Consensus 402 L~pyQkegV~wL~el~~~~-~GgILADEMGLGKTIqaIA~L~~L~~s~ 448 (1231)
+||.|...-+-+......- ..-++.-..|+|||..|..|...+....
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~ 49 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGLLCET 49 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 4677776666665542222 2445788999999999999998887644
No 379
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=50.24 E-value=98 Score=40.73 Aligned_cols=90 Identities=13% Similarity=0.071 Sum_probs=45.0
Q ss_pred CHHHHHHHHhhhhcCCccEEEEeCCcccCCcchHHHHHHHhc-----ccccEEEecccCccCChHHHHHhhhhh---cC-
Q 044798 542 TYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQL-----QTVHRIIMTGAPIQNKLSELWSLFDFV---FP- 612 (1231)
Q Consensus 542 TYe~Lr~~~~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L-----~t~~RllLTGTPiqNnl~EL~SLl~FL---~P- 612 (1231)
+...+......+. ..++||||=+=+.-+.. .....+..+ ....-++|++|--...+.++..-|+.+ .+
T Consensus 250 ~~~~l~~al~~~~--~~D~VLIDTAGRs~~d~-~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~ 326 (767)
T PRK14723 250 DAADLRFALAALG--DKHLVLIDTVGMSQRDR-NVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVD 326 (767)
T ss_pred CHHHHHHHHHHhc--CCCEEEEeCCCCCccCH-HHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCC
Confidence 3444444344333 35788888876553322 233333333 122346688886555566665555432 11
Q ss_pred ----------CCCCChhHHHHhhccccccCCC
Q 044798 613 ----------GKLGVLPVFEAEFAVPITVGGY 634 (1231)
Q Consensus 613 ----------~~lg~~~~F~~~f~~pI~~g~~ 634 (1231)
..+|..-.+...+..||..-+.
T Consensus 327 glIlTKLDEt~~~G~iL~i~~~~~lPI~yit~ 358 (767)
T PRK14723 327 GCIITKLDEATHLGPALDTVIRHRLPVHYVST 358 (767)
T ss_pred EEEEeccCCCCCccHHHHHHHHHCCCeEEEec
Confidence 1234444556666667664433
No 380
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=49.76 E-value=88 Score=32.24 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcC----CcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccc
Q 044798 748 MKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASG----YEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKV 823 (1231)
Q Consensus 748 l~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~G----i~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkv 823 (1231)
...+..|+.+....|++++|+|.....+..|-..|.... ++..+ .|.-.. ...-| +|++..
T Consensus 15 ~~~~c~L~~k~~~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~-~~~~~~-------------~~~PV-~i~~~~ 79 (137)
T PF04364_consen 15 ERFACRLAEKAYRQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGL-AGEPPA-------------ARQPV-LITWDQ 79 (137)
T ss_dssp HHHHHHHHHHHHHTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEE-TT-SST-------------T--SE-EEE-TT
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcc-cCCCCC-------------CCCeE-EEecCc
Confidence 588999999999999999999999999999999997652 22333 222110 01134 444322
Q ss_pred cccccCCCCCCEEEEcCCCC
Q 044798 824 GGLGTNLTGANRVIIFDPDW 843 (1231)
Q Consensus 824 Gg~GLNLt~AnrVIi~Dp~W 843 (1231)
.. -....++.+|++++.+
T Consensus 80 ~~--~~~~~~~vLinL~~~~ 97 (137)
T PF04364_consen 80 EA--NPNNHADVLINLSGEV 97 (137)
T ss_dssp S------S--SEEEE--SS-
T ss_pred cc--CCCCCCCEEEECCCCC
Confidence 11 2234488999998887
No 381
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=49.67 E-value=2.2e+02 Score=32.82 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=23.9
Q ss_pred EEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC
Q 044798 424 IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV 459 (1231)
Q Consensus 424 ILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~ 459 (1231)
++.-..|.|||.++..+...+... .+++++|+--
T Consensus 76 ~l~G~~G~GKTTt~akLA~~l~~~--g~~V~li~~D 109 (272)
T TIGR00064 76 LFVGVNGVGKTTTIAKLANKLKKQ--GKSVLLAAGD 109 (272)
T ss_pred EEECCCCCcHHHHHHHHHHHHHhc--CCEEEEEeCC
Confidence 355799999999888777666433 3577777643
No 382
>PRK06921 hypothetical protein; Provisional
Probab=48.76 E-value=1.1e+02 Score=34.98 Aligned_cols=65 Identities=15% Similarity=0.076 Sum_probs=39.0
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHH------HHHHcCCCeEEEEecc
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKRE------AEKWYPSFHVELLHDS 484 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E------~~kw~p~lrV~il~gs 484 (1231)
.+.+.+|.-++|+|||..+.|++..+.... ...++.+....++.+-... +...+....+.++..-
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~-g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl 186 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKK-GVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDL 186 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhc-CceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 355678899999999999888888776441 2455555544444332221 2222345566666543
No 383
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=48.72 E-value=44 Score=37.97 Aligned_cols=49 Identities=14% Similarity=0.053 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q 044798 404 DYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVC 457 (1231)
Q Consensus 404 pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~ 457 (1231)
|+.+..+..+......+...+|..+.|+|||..|-++...+ ..+++.|+
T Consensus 5 ~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~~l-----g~~~~~i~ 53 (262)
T TIGR02640 5 DAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVARKR-----DRPVMLIN 53 (262)
T ss_pred HHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHh-----CCCEEEEe
Confidence 34444555555555677788999999999999887765432 34666553
No 384
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=48.58 E-value=88 Score=35.92 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=22.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcC
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSN 448 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~ 448 (1231)
-++..+.|.|||..+.++...+....
T Consensus 27 lL~~Gp~G~Gktt~a~~lA~~l~~~~ 52 (325)
T COG0470 27 LLFYGPPGVGKTTAALALAKELLCEN 52 (325)
T ss_pred eeeeCCCCCCHHHHHHHHHHHHhCCC
Confidence 67888899999999999998887544
No 385
>PRK08506 replicative DNA helicase; Provisional
Probab=48.22 E-value=1.6e+02 Score=36.74 Aligned_cols=48 Identities=17% Similarity=-0.076 Sum_probs=36.2
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHH
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEK 471 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~k 471 (1231)
=.|||..+|+|||.-++.++..... ...++++++.-.-..|+...+-.
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~--~g~~V~~fSlEMs~~ql~~Rlla 241 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALN--QDKGVAFFSLEMPAEQLMLRMLS 241 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHh--cCCcEEEEeCcCCHHHHHHHHHH
Confidence 3588999999999998888776543 34689999987666676655543
No 386
>CHL00206 ycf2 Ycf2; Provisional
Probab=47.98 E-value=52 Score=46.90 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=29.4
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQW 465 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW 465 (1231)
.+|.+|.-.+|+|||.-|=|++... .-|.+-|....++..|
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es-----~VPFIsISgs~fl~~~ 1670 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS-----YVPFITVFLNKFLDNK 1670 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc-----CCceEEEEHHHHhhcc
Confidence 3588899999999999887766543 2466666666666555
No 387
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=47.62 E-value=1.3e+02 Score=38.47 Aligned_cols=41 Identities=22% Similarity=0.119 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHcCC--CcE-EEEeCCCchHHHHHHHHHHHHhh
Q 044798 406 QKVGVQWLWELHCQR--AGG-IIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 406 QkegV~wL~el~~~~--~Gg-ILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
|...+..|......+ ... |+.-+-|+|||..+.+|+..+..
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 21 QEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 445555555544333 233 78899999999999988888764
No 388
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=47.56 E-value=38 Score=39.89 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=24.8
Q ss_pred HHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 411 QWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 411 ~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
.+|+.+...+...+++-.+|+|||-.+-+++..+
T Consensus 139 ~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 139 EAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred HHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 3455555577788999999999997666666544
No 389
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=47.15 E-value=1.4e+02 Score=43.78 Aligned_cols=60 Identities=20% Similarity=0.022 Sum_probs=43.2
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHH
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQ 464 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~Q 464 (1231)
.|-+-|+++|.-++. ....-.||--..|.|||-.+-+++..+... ...+++++|..-..+
T Consensus 429 ~Ls~~Q~~Av~~il~--s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~--G~~V~~lAPTgrAA~ 488 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFT--STKRFIIINGFGGTGSTEIAQLLLHLASEQ--GYEIQIITAGSLSAQ 488 (1960)
T ss_pred CCCHHHHHHHHHHHh--CCCCeEEEEECCCCCHHHHHHHHHHHHHhc--CCeEEEEeCCHHHHH
Confidence 578899999987644 344566778889999998766666555433 368999999755443
No 390
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=47.08 E-value=77 Score=29.92 Aligned_cols=46 Identities=20% Similarity=0.226 Sum_probs=35.5
Q ss_pred CCeEEEEec------cHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHH
Q 044798 762 GHRVLLFAQ------TQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDE 807 (1231)
Q Consensus 762 g~KVLVFSQ------~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~ 807 (1231)
+++|+||+. +-.....+..+|...|+.|..++=......|+.+...
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~ 58 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEY 58 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHH
Confidence 469999986 5567888999999999999999866665555555544
No 391
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=47.04 E-value=56 Score=42.64 Aligned_cols=162 Identities=20% Similarity=0.165 Sum_probs=102.3
Q ss_pred EecCCHHHHHHHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHh
Q 044798 681 FCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKD 760 (1231)
Q Consensus 681 ~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~ 760 (1231)
...+++.|...|..+..+. -+.++.|+. -...|+|.++.++++.....
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~---------------------~~~~~~Ll~-----------GvTGSGKTEvYl~~i~~~L~ 243 (730)
T COG1198 196 WLALNQEQQAAVEAILSSL---------------------GGFAPFLLD-----------GVTGSGKTEVYLEAIAKVLA 243 (730)
T ss_pred ccccCHHHHHHHHHHHHhc---------------------ccccceeEe-----------CCCCCcHHHHHHHHHHHHHH
Confidence 4577888888887665430 123344432 34579999999999999999
Q ss_pred cCCeEEEEeccHHHHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEc
Q 044798 761 QGHRVLLFAQTQQMLDILESFLIAS-GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIF 839 (1231)
Q Consensus 761 ~g~KVLVFSQ~~~~LdiLe~~L~~~-Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~ 839 (1231)
+|+.+||-..-......+...|+.+ |.++..+|...+..+|.....+..++ ..+|++-+-.+.= +-+..--.||+
T Consensus 244 ~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G-~~~vVIGtRSAlF--~Pf~~LGLIIv- 319 (730)
T COG1198 244 QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRG-EARVVIGTRSALF--LPFKNLGLIIV- 319 (730)
T ss_pred cCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcC-CceEEEEechhhc--CchhhccEEEE-
Confidence 9999999877666555555555443 78999999999999999999999988 5667554332221 11222233333
Q ss_pred CCCCCcc----h--HHHHHHhHHhhCCcccEEEEEEEeCCCHHHH
Q 044798 840 DPDWNPS----T--DVQARERAWRIGQKQDVTVYRLITRGTIEEK 878 (1231)
Q Consensus 840 Dp~WNPs----~--d~QAigRa~RiGQkk~V~VYRLit~gTIEEk 878 (1231)
|-.-+.+ . .-+|++=+...++...+.|.-=-+.=|+|..
T Consensus 320 DEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~ 364 (730)
T COG1198 320 DEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESY 364 (730)
T ss_pred eccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCHHHH
Confidence 3222221 1 3356666655566666655433334456654
No 392
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=46.91 E-value=1.6e+02 Score=31.35 Aligned_cols=92 Identities=13% Similarity=0.165 Sum_probs=55.8
Q ss_pred CCcchHHHH-HHHHHHHHHh----cCCeEEEEeccHHHHHHHHH----HHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCC
Q 044798 742 PERSEKMKV-VAQVLKVWKD----QGHRVLLFAQTQQMLDILES----FLIASGYEYRRMDGLTPVKQRMALIDEYNNSS 812 (1231)
Q Consensus 742 ~~~S~Kl~~-L~eLLk~~~~----~g~KVLVFSQ~~~~LdiLe~----~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~ 812 (1231)
+..+||... +..++..+.. .+.++||.+.....+..+.. +....++.+..++|..+...+...+ ..
T Consensus 44 ~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-- 118 (203)
T cd00268 44 QTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKL---KR-- 118 (203)
T ss_pred CCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh---cC--
Confidence 356788644 5556665544 35689999998876655444 4444578889999998876654333 32
Q ss_pred CceEEEEecccc-----ccccCCCCCCEEEE
Q 044798 813 DVFIFILTTKVG-----GLGTNLTGANRVII 838 (1231)
Q Consensus 813 ~i~VfLlSTkvG-----g~GLNLt~AnrVIi 838 (1231)
++.|++.|+... ..-+++...+.||+
T Consensus 119 ~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIv 149 (203)
T cd00268 119 GPHIVVATPGRLLDLLERGKLDLSKVKYLVL 149 (203)
T ss_pred CCCEEEEChHHHHHHHHcCCCChhhCCEEEE
Confidence 346766664321 11255566666554
No 393
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=46.81 E-value=66 Score=42.19 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=18.4
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGA 443 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~ 443 (1231)
+.|.+|.-+.|+|||..+-++...
T Consensus 212 ~~giLL~GppGtGKT~laraia~~ 235 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANE 235 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHH
Confidence 467889999999999876655443
No 394
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=46.48 E-value=89 Score=39.02 Aligned_cols=34 Identities=12% Similarity=0.114 Sum_probs=21.1
Q ss_pred EEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q 044798 424 IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVC 457 (1231)
Q Consensus 424 ILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~ 457 (1231)
.|.-..|.|||.++.-+...+........+.+|.
T Consensus 260 ~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~ 293 (484)
T PRK06995 260 ALMGPTGVGKTTTTAKLAARCVMRHGASKVALLT 293 (484)
T ss_pred EEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 3677899999988776665553332223444443
No 395
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=45.66 E-value=99 Score=35.69 Aligned_cols=35 Identities=11% Similarity=0.326 Sum_probs=18.5
Q ss_pred CEEEeCHHHHHHHHhhhhcCCccEEEEeCCcccCCc
Q 044798 537 GLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNP 572 (1231)
Q Consensus 537 ~VvItTYe~Lr~~~~~L~~~~wd~VILDEAH~IKN~ 572 (1231)
.|.+.+...-. ....+....+++||+||+-.+.+.
T Consensus 78 ~i~~~~~~~~~-~~~~~~G~~~~~i~iDE~~~~~~~ 112 (384)
T PF03237_consen 78 RIQFRGADSPD-SGDNIRGFEYDLIIIDEAAKVPDD 112 (384)
T ss_dssp EEEEES------SHHHHHTS--SEEEEESGGGSTTH
T ss_pred EEEEecccccc-ccccccccccceeeeeecccCchH
Confidence 34444443221 234455678999999998877543
No 396
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=45.65 E-value=2.6e+02 Score=37.55 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=19.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHh
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~ 445 (1231)
.++.-++|+|||..|-++...+.
T Consensus 598 ~Lf~Gp~GvGKt~lA~~La~~l~ 620 (852)
T TIGR03346 598 FLFLGPTGVGKTELAKALAEFLF 620 (852)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhc
Confidence 56899999999999887776654
No 397
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=45.63 E-value=96 Score=45.25 Aligned_cols=61 Identities=16% Similarity=0.071 Sum_probs=39.8
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhh--cCCCCcEEEEeCCcch
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF--SNMYKPSIVVCPVTLL 462 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~--s~~~kpvLIV~P~sLl 462 (1231)
..|-+-|+.++.-+.. ....-.+|---.|.|||.++.+++..+.. ......++.++|..-.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~--~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~A 1080 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIIS--TKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEA 1080 (1960)
T ss_pred CCCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHH
Confidence 4689999999987744 34455677778999999887544333221 1123467778886443
No 398
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=45.45 E-value=2.9e+02 Score=32.37 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=19.2
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
...++.-+.|+|||..+.++...+
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l 75 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEM 75 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHh
Confidence 467899999999998887665544
No 399
>PRK10865 protein disaggregation chaperone; Provisional
Probab=45.26 E-value=3.5e+02 Score=36.38 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=18.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHh
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~ 445 (1231)
.++.-++|+|||..|-++...+.
T Consensus 601 ~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 601 FLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 47889999999999887766554
No 400
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=45.26 E-value=31 Score=39.04 Aligned_cols=50 Identities=18% Similarity=0.141 Sum_probs=28.6
Q ss_pred HhhhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHH
Q 044798 550 GEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWS 605 (1231)
Q Consensus 550 ~~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~S 605 (1231)
.......++|++|++| |++.. ...++....+.|...+| |--.++..+...
T Consensus 190 l~~~LR~~pD~iiigE---iR~~e--~~~~~~a~~tGh~~~~t-T~Ha~s~~~~i~ 239 (270)
T PF00437_consen 190 LKSALRQDPDVIIIGE---IRDPE--AAEAIQAANTGHLGSLT-TLHANSAEDAIE 239 (270)
T ss_dssp HHHHTTS--SEEEESC---E-SCH--HHHHHHHHHTT-EEEEE-EEE-SSHHHHHH
T ss_pred HHHHhcCCCCcccccc---cCCHh--HHHHHHhhccCCceeee-eeecCCHHHHHH
Confidence 3345667899999999 56654 44457778888887554 333455555544
No 401
>PRK08840 replicative DNA helicase; Provisional
Probab=44.85 E-value=2.6e+02 Score=34.79 Aligned_cols=50 Identities=14% Similarity=0.078 Sum_probs=36.3
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEK 471 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~k 471 (1231)
.=.|||.-+|+|||.-++.++...... ...|++++..-.-..|+..-+-.
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~-~~~~v~~fSlEMs~~ql~~Rlla 267 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMD-QDKPVLIFSLEMPAEQLMMRMLA 267 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHh-CCCeEEEEeccCCHHHHHHHHHH
Confidence 345889999999999887766554322 24689999887777777666543
No 402
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=44.61 E-value=24 Score=47.70 Aligned_cols=49 Identities=27% Similarity=0.410 Sum_probs=38.1
Q ss_pred hcCCC--CChHHHHHHhcccCCCCChHHHHHHHHhhhccccCC-CCCceeeccCCC
Q 044798 1178 QRGGS--SNSACIVEHFKDRVPSKDLPLFKNLLKEIATLQKDP-SGSRWVLKLNFV 1230 (1231)
Q Consensus 1178 ~~~~~--~~t~~~~~~f~~~~~~~~~~~f~~~l~~~~~~~~~~-~~~~w~lk~~~~ 1230 (1231)
+.+|. ..-++|=.||-. . .=.-.|.=||+.|+|.|.+ +.+.|+|||+|+
T Consensus 709 s~~g~r~I~id~lsk~Fp~-~---se~siRKrLKecad~kR~G~~~~~W~LK~df~ 760 (1563)
T KOG0008|consen 709 SDSGPRRIRIDDLSKAFPD-Q---SESSIRKRLKECADFKRDGMGKNYWVLKPDFR 760 (1563)
T ss_pred cCCCCcceehhHHHhhCcc-c---chHHHHHHHHHHHHHhhcCCCCCeeEeccccc
Confidence 34444 678889888843 3 3345788999999999998 459999999996
No 403
>PRK09401 reverse gyrase; Reviewed
Probab=44.59 E-value=2.5e+02 Score=39.08 Aligned_cols=96 Identities=11% Similarity=0.099 Sum_probs=60.1
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc----CCcEEEEeCC--CCHHHHHHHHHHHhCCCCce
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS----GYEYRRMDGL--TPVKQRMALIDEYNNSSDVF 815 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~----Gi~~~rIdGs--ts~~eRq~iId~Fn~d~~i~ 815 (1231)
+..+||..++.-++..+...|.++||.+.++..+..+...++.. ++.+..+.|. ++..++......+..+ +..
T Consensus 103 pTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~-~~~ 181 (1176)
T PRK09401 103 PTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEG-DFD 181 (1176)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcC-CCC
Confidence 45788887655444444456789999999988777666665543 5565555544 4567788888888865 346
Q ss_pred EEEEecccccc---ccCCCCCCEEEE
Q 044798 816 IFILTTKVGGL---GTNLTGANRVII 838 (1231)
Q Consensus 816 VfLlSTkvGg~---GLNLt~AnrVIi 838 (1231)
|++.|+.-... .+.+...+.||+
T Consensus 182 IlV~Tp~rL~~~~~~l~~~~~~~lVv 207 (1176)
T PRK09401 182 ILVTTSQFLSKNFDELPKKKFDFVFV 207 (1176)
T ss_pred EEEECHHHHHHHHHhccccccCEEEE
Confidence 76666433222 233334555554
No 404
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=44.50 E-value=44 Score=38.22 Aligned_cols=41 Identities=24% Similarity=0.114 Sum_probs=29.9
Q ss_pred chHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 402 L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
+.+.|.+.+.++.. ...+..+++-++|+|||-.+-+++..+
T Consensus 64 ~~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~l~all~~i 104 (264)
T cd01129 64 LKPENLEIFRKLLE--KPHGIILVTGPTGSGKTTTLYSALSEL 104 (264)
T ss_pred CCHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHHHHHHHhhh
Confidence 56778887766643 233346789999999998887777665
No 405
>PRK04328 hypothetical protein; Provisional
Probab=43.72 E-value=1.2e+02 Score=34.29 Aligned_cols=46 Identities=22% Similarity=0.149 Sum_probs=30.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHH
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAE 470 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~ 470 (1231)
.++.-+.|+|||+.++-|+...... ..++|+|+=-.-..+-.+.+.
T Consensus 26 ili~G~pGsGKT~l~~~fl~~~~~~--ge~~lyis~ee~~~~i~~~~~ 71 (249)
T PRK04328 26 VLLSGGPGTGKSIFSQQFLWNGLQM--GEPGVYVALEEHPVQVRRNMR 71 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhc--CCcEEEEEeeCCHHHHHHHHH
Confidence 4679999999999999888765433 357788875333333333333
No 406
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=43.68 E-value=1.6e+02 Score=36.43 Aligned_cols=41 Identities=24% Similarity=0.110 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHcCCC---cEEEEeCCCchHHHHHHHHHHHHhh
Q 044798 406 QKVGVQWLWELHCQRA---GGIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 406 QkegV~wL~el~~~~~---GgILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
|...+.++......+. .-|+.-+.|+|||..+.+++..+..
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c 65 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNC 65 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 5566666666554432 3478899999999999999888764
No 407
>PF13607 Succ_CoA_lig: Succinyl-CoA ligase like flavodoxin domain; PDB: 2CSU_A.
Probab=43.63 E-value=91 Score=32.27 Aligned_cols=85 Identities=18% Similarity=0.181 Sum_probs=55.6
Q ss_pred eEEEEeccHHHHHHHHHHHHHcCC--cEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCC
Q 044798 764 RVLLFAQTQQMLDILESFLIASGY--EYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDP 841 (1231)
Q Consensus 764 KVLVFSQ~~~~LdiLe~~L~~~Gi--~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp 841 (1231)
.|=|+||+-.+...|-..+...|+ .+..=.|....-.-..+++.|.+|+.++++++- ++.
T Consensus 3 ~valisQSG~~~~~~~~~~~~~g~g~s~~vs~Gn~~dv~~~d~l~~~~~D~~t~~I~ly------------------~E~ 64 (138)
T PF13607_consen 3 GVALISQSGALGTAILDWAQDRGIGFSYVVSVGNEADVDFADLLEYLAEDPDTRVIVLY------------------LEG 64 (138)
T ss_dssp SEEEEES-HHHHHHHHHHHHHTT-EESEEEE-TT-SSS-HHHHHHHHCT-SS--EEEEE------------------ES-
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCeeEEEEeCccccCCHHHHHHHHhcCCCCCEEEEE------------------ccC
Confidence 567899999999999899988755 556666765545567899999999988887643 455
Q ss_pred CCCcchHHHHHHhHHhhCCcccEEEEEE
Q 044798 842 DWNPSTDVQARERAWRIGQKQDVTVYRL 869 (1231)
Q Consensus 842 ~WNPs~d~QAigRa~RiGQkk~V~VYRL 869 (1231)
--||..+..+.-|+.| +|||.+|+-
T Consensus 65 ~~d~~~f~~~~~~a~~---~KPVv~lk~ 89 (138)
T PF13607_consen 65 IGDGRRFLEAARRAAR---RKPVVVLKA 89 (138)
T ss_dssp -S-HHHHHHHHHHHCC---CS-EEEEE-
T ss_pred CCCHHHHHHHHHHHhc---CCCEEEEeC
Confidence 5578888888777765 499998764
No 408
>PRK08006 replicative DNA helicase; Provisional
Probab=43.07 E-value=2.5e+02 Score=35.10 Aligned_cols=49 Identities=14% Similarity=0.034 Sum_probs=36.1
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHH
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEK 471 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~k 471 (1231)
=.|||.-+|+|||.-++.++...... ...+++++..-.-..|+..-+..
T Consensus 226 LiiIaarPgmGKTafalnia~~~a~~-~g~~V~~fSlEM~~~ql~~Rlla 274 (471)
T PRK08006 226 LIIVAARPSMGKTTFAMNLCENAAML-QDKPVLIFSLEMPGEQIMMRMLA 274 (471)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh-cCCeEEEEeccCCHHHHHHHHHH
Confidence 35889999999999888777655322 24689999887777777665543
No 409
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=43.00 E-value=35 Score=43.55 Aligned_cols=44 Identities=18% Similarity=0.232 Sum_probs=36.9
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
++|+.|.+-.+-++.....+.-||+-.++|+|||+..|+....+
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltW 58 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTW 58 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHH
Confidence 56888998888888888899999999999999999876554443
No 410
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=42.72 E-value=1.1e+02 Score=34.56 Aligned_cols=17 Identities=29% Similarity=0.212 Sum_probs=14.3
Q ss_pred cEEEEeCCCchHHHHHH
Q 044798 422 GGIIGDEMGLGKTIQVL 438 (1231)
Q Consensus 422 GgILADEMGLGKTIqaI 438 (1231)
..|+.-..|+|||--|-
T Consensus 52 h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp EEEEESSTTSSHHHHHH
T ss_pred eEEEECCCccchhHHHH
Confidence 68999999999996544
No 411
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.64 E-value=1.5e+02 Score=36.60 Aligned_cols=95 Identities=12% Similarity=0.127 Sum_probs=65.4
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEec
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTT 821 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlST 821 (1231)
+..+||-.+ -+|..+. .+..+||.+..+..+.-....|...|+....+.|..+..++..++.....+ .+.++++|+
T Consensus 34 pTGsGKTl~--y~lp~l~-~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~-~~~il~~TP 109 (470)
T TIGR00614 34 PTGGGKSLC--YQLPALC-SDGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDG-KIKLLYVTP 109 (470)
T ss_pred CCCCcHhHH--HHHHHHH-cCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCCEEEECH
Confidence 456788642 2222222 245889999999887666667778899999999999999988888888665 577877776
Q ss_pred ccccccc-------CCCCCCEEEEcC
Q 044798 822 KVGGLGT-------NLTGANRVIIFD 840 (1231)
Q Consensus 822 kvGg~GL-------NLt~AnrVIi~D 840 (1231)
....... .+.....||+=+
T Consensus 110 e~l~~~~~~~~~l~~~~~i~~iViDE 135 (470)
T TIGR00614 110 EKCSASNRLLQTLEERKGITLIAVDE 135 (470)
T ss_pred HHHcCchhHHHHHHhcCCcCEEEEeC
Confidence 5543322 344556666533
No 412
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=42.61 E-value=1.2e+02 Score=37.75 Aligned_cols=49 Identities=24% Similarity=0.225 Sum_probs=38.3
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHH
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKW 472 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw 472 (1231)
-.++.-++|.|||.-++-|+...... ..++|+|+--.-..|.......+
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~--ge~~~y~s~eEs~~~i~~~~~~l 313 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACAN--KERAILFAYEESRAQLLRNAYSW 313 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC--CCeEEEEEeeCCHHHHHHHHHHc
Confidence 35789999999999999888876543 35889998877777777776654
No 413
>PRK07004 replicative DNA helicase; Provisional
Probab=42.31 E-value=1.9e+02 Score=36.00 Aligned_cols=49 Identities=14% Similarity=-0.034 Sum_probs=36.0
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAE 470 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~ 470 (1231)
.=.|||..+|+|||.-++.++...... ...++++++.-.--.|+...+-
T Consensus 214 ~liviaarpg~GKT~~al~ia~~~a~~-~~~~v~~fSlEM~~~ql~~R~l 262 (460)
T PRK07004 214 ELIIVAGRPSMGKTAFSMNIGEYVAVE-YGLPVAVFSMEMPGTQLAMRML 262 (460)
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHH-cCCeEEEEeCCCCHHHHHHHHH
Confidence 345889999999999888887654321 2468999988777777766553
No 414
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.89 E-value=1.8e+02 Score=34.65 Aligned_cols=41 Identities=15% Similarity=0.012 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCC---CcEEEEeCCCchHHHHHHHHHHHHh
Q 044798 405 YQKVGVQWLWELHCQR---AGGIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 405 yQkegV~wL~el~~~~---~GgILADEMGLGKTIqaIA~L~~L~ 445 (1231)
.|...+.-+......+ ...++.-+.|+|||..+-++...+.
T Consensus 21 g~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~ 64 (367)
T PRK14970 21 GQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKIN 64 (367)
T ss_pred CcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4455555555544433 2567899999999988877765553
No 415
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=41.58 E-value=1.7e+02 Score=34.71 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=32.5
Q ss_pred EEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHHcCCCeEEEEe
Q 044798 424 IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLH 482 (1231)
Q Consensus 424 ILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw~p~lrV~il~ 482 (1231)
++.--.|.|||-++.=+...+.. ...++|+.+=-+--.-=.+++.-|.-.+.+.++.
T Consensus 143 l~vGVNG~GKTTTIaKLA~~l~~--~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~ 199 (340)
T COG0552 143 LFVGVNGVGKTTTIAKLAKYLKQ--QGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVIS 199 (340)
T ss_pred EEEecCCCchHhHHHHHHHHHHH--CCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEc
Confidence 44667899999775544444432 3456666666444444445555665434444443
No 416
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=41.46 E-value=2.4e+02 Score=29.99 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=20.8
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhh
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
.-++.-+.|.|||-.+..++..+..
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3567899999999999988887764
No 417
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=41.37 E-value=1.4e+02 Score=37.74 Aligned_cols=73 Identities=16% Similarity=0.039 Sum_probs=46.4
Q ss_pred hhhhchHHHHHHHHHHHHHHcCCCc------EEEEeCCCchHHHHHHHHHHH--HhhcCCCCcEEEEeCC-cchHHHHHH
Q 044798 398 IFNNLFDYQKVGVQWLWELHCQRAG------GIIGDEMGLGKTIQVLSFLGA--LHFSNMYKPSIVVCPV-TLLRQWKRE 468 (1231)
Q Consensus 398 i~~~L~pyQkegV~wL~el~~~~~G------gILADEMGLGKTIqaIA~L~~--L~~s~~~kpvLIV~P~-sLl~QW~~E 468 (1231)
....|-|||+..+.-|+-.+....| ++|--.=|=|||-.+.+++.+ +..+.....++|++|. -..++=-++
T Consensus 58 ~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ 137 (546)
T COG4626 58 FPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNP 137 (546)
T ss_pred CccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHH
Confidence 4457899999998877654444333 467778899999765544443 3444455678999985 333333344
Q ss_pred HH
Q 044798 469 AE 470 (1231)
Q Consensus 469 ~~ 470 (1231)
+.
T Consensus 138 ar 139 (546)
T COG4626 138 AR 139 (546)
T ss_pred HH
Confidence 33
No 418
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=40.76 E-value=54 Score=42.30 Aligned_cols=66 Identities=18% Similarity=0.108 Sum_probs=46.0
Q ss_pred chHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhc-C-CCCcEEEEeCC-cchHHHHHHHHHHc
Q 044798 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS-N-MYKPSIVVCPV-TLLRQWKREAEKWY 473 (1231)
Q Consensus 402 L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s-~-~~kpvLIV~P~-sLl~QW~~E~~kw~ 473 (1231)
|-|-|+.+|.+ ..+.+++-...|+|||.+.+.-+..+... + ....+|+|+.+ .....-...+.+..
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l 70 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTL 70 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 67889998864 23556777889999999999888888753 2 33557777664 44455555565544
No 419
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=40.44 E-value=74 Score=39.65 Aligned_cols=24 Identities=25% Similarity=0.347 Sum_probs=19.3
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGA 443 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~ 443 (1231)
..|.+|.-+.|+|||..+-++...
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~ 111 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGE 111 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999999987766543
No 420
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=40.24 E-value=1.2e+02 Score=33.93 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=25.8
Q ss_pred eCCCchHHHHHHHHHHHHhhcCCCCcEEEEe--CCcchHHHHH
Q 044798 427 DEMGLGKTIQVLSFLGALHFSNMYKPSIVVC--PVTLLRQWKR 467 (1231)
Q Consensus 427 DEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~--P~sLl~QW~~ 467 (1231)
--=|.|||..++.+...+...+ .+++||= |..-+..|..
T Consensus 9 ~KGGvGKTT~a~nLA~~la~~G--~~VlliD~DpQ~s~~~w~~ 49 (231)
T PRK13849 9 FKGGAGKTTALMGLCAALASDG--KRVALFEADENRPLTRWKE 49 (231)
T ss_pred CCCCccHHHHHHHHHHHHHhCC--CcEEEEeCCCCCCHHHHHH
Confidence 3348899999998888776543 4665552 3455567754
No 421
>COG4646 DNA methylase [Transcription / DNA replication, recombination, and repair]
Probab=39.91 E-value=16 Score=44.24 Aligned_cols=30 Identities=30% Similarity=0.579 Sum_probs=26.8
Q ss_pred ccEEEecccCccCChHHHHHhhhhhcCCCC
Q 044798 586 VHRIIMTGAPIQNKLSELWSLFDFVFPGKL 615 (1231)
Q Consensus 586 ~~RllLTGTPiqNnl~EL~SLl~FL~P~~l 615 (1231)
.+..++||||+.|.+.|+|++-++|.++.+
T Consensus 474 ~~L~l~sgTpi~ntlgem~~vqRyl~~~al 503 (637)
T COG4646 474 RALVLASGTPITNTLGEMFSVQRYLGAGAL 503 (637)
T ss_pred CeEEecCCCchhhhHHhhhhhhhhcCccHH
Confidence 556889999999999999999999988764
No 422
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=39.59 E-value=2e+02 Score=38.69 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=18.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHh
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~ 445 (1231)
.++.-++|.|||..+-++...++
T Consensus 599 ~lf~Gp~GvGKT~lA~~La~~l~ 621 (852)
T TIGR03345 599 FLLVGPSGVGKTETALALAELLY 621 (852)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 47899999999999887766654
No 423
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=38.71 E-value=3.3e+02 Score=30.12 Aligned_cols=65 Identities=15% Similarity=0.103 Sum_probs=41.6
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHH---H-----HHHHHHHcCCCeEEEEecccc
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQ---W-----KREAEKWYPSFHVELLHDSAQ 486 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~Q---W-----~~E~~kw~p~lrV~il~gs~~ 486 (1231)
..+|.-+.|+|||--.-|+...+....+..+++.+........ + ..+|...+-...+.++.+...
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~ 108 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQF 108 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGG
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchh
Confidence 3688999999999876666666665555556666655333222 2 234555566788888876543
No 424
>cd07977 TFIIE_beta_winged_helix TFIIE_beta_winged_helix domain, located at the central core region of TFIIE beta, with double-stranded DNA binding activity. Transcription Factor IIE (TFIIE) beta winged-helix (or forkhead) domain is located at the central core region of TFIIE beta. The winged-helix is a form of helix-turn-helix (HTH) domain which typically binds DNA with the 3rd helix. The winged-helix domain is distinguished by the presence of a C-terminal beta-strand hairpin unit (the wing) that packs against the cleft of the tri-helical core. Although most winged-helix domains are multi-member families, TFIIE beta winged-helix domain is typically found as a single orthologous group. TFIIE is one of the six eukaryotic general transcription factors (TFIIA, TFIIB, TFIID, TFIIE, TFIIF and TFIIH) that are required for transcription initiation of protein-coding genes. TFIIE is a heterotetramer consisting of two copies each of alpha and beta subunits. TFIIE beta contains several functional
Probab=38.67 E-value=93 Score=28.92 Aligned_cols=60 Identities=20% Similarity=0.339 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhcC-CCCChHHHHHHhc-ccCCCCChHHHHHHHHhhhcccc---CCCCCceeeccCCC
Q 044798 1167 ILIRQICTFMQQRG-GSSNSACIVEHFK-DRVPSKDLPLFKNLLKEIATLQK---DPSGSRWVLKLNFV 1230 (1231)
Q Consensus 1167 ~~~~~~~~~~~~~~-~~~~t~~~~~~f~-~~~~~~~~~~f~~~l~~~~~~~~---~~~~~~w~lk~~~~ 1230 (1231)
..+..|++||+.++ .-.+-++|+++-+ ..+. ...+.+|+..+..+. .+..|....||.|-
T Consensus 9 t~l~~aV~ymK~r~~~Plt~~EIl~~ls~~d~~----~~~~~~L~~~~~~~n~~~~~~~~tf~fkP~y~ 73 (75)
T cd07977 9 TQLAKIVDYMKKRHQHPLTLDEILDYLSLLDIG----PKLKEWLKSEALVNNPKIDPKDGTFSFKPKYN 73 (75)
T ss_pred hhHHHHHHHHHhcCCCCccHHHHHHHHhccCcc----HHHHHHHHhhhhccCceeccCCCEEEeccCCC
Confidence 46789999999999 8899999999987 3332 667788888777642 22246777777763
No 425
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=38.45 E-value=3.4e+02 Score=27.09 Aligned_cols=47 Identities=17% Similarity=0.062 Sum_probs=29.2
Q ss_pred EEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHHcC
Q 044798 424 IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYP 474 (1231)
Q Consensus 424 ILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw~p 474 (1231)
++.-..|.|||..+..+...+... ..++++|-=-. ..+..++..+..
T Consensus 3 ~~~GkgG~GKTt~a~~la~~l~~~--g~~V~~id~D~--~~~~~~~~~~~~ 49 (116)
T cd02034 3 AITGKGGVGKTTIAALLARYLAEK--GKPVLAIDADP--DDLPERLSVEVG 49 (116)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHC--CCcEEEEECCc--hhhHHHHhhccC
Confidence 566678999999887777666543 34565554322 555555555543
No 426
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=38.38 E-value=2.4e+02 Score=36.93 Aligned_cols=38 Identities=18% Similarity=0.297 Sum_probs=28.6
Q ss_pred eEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHH
Q 044798 764 RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRM 802 (1231)
Q Consensus 764 KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq 802 (1231)
.+.|.+........|+..|...||+|....| .+.-+|.
T Consensus 344 diAVL~R~~~~~~~le~~L~~~gIPy~~~g~-~~f~~~~ 381 (715)
T TIGR01075 344 ECAVLYRSNAQSRVLEEALLQASIPYRIYGG-MRFFERQ 381 (715)
T ss_pred CEEEEEecCchHHHHHHHHHHcCCCEEEeCC-ccccccH
Confidence 5666677788899999999999999977654 4443443
No 427
>PF12846 AAA_10: AAA-like domain
Probab=38.14 E-value=61 Score=36.48 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=30.4
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWK 466 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~ 466 (1231)
..+++.-.+|+|||..+..++..+...+ .+++|+=|..-...|.
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~g--~~~~i~D~~g~~~~~~ 45 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRRG--PRVVIFDPKGDYSPLA 45 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHcC--CCEEEEcCCchHHHHH
Confidence 4567788899999998887776666544 5677775654444433
No 428
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=38.09 E-value=73 Score=34.99 Aligned_cols=49 Identities=18% Similarity=0.099 Sum_probs=35.9
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhc-CCCCcEEEEeCCcchHHHHHHHHHH
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFS-NMYKPSIVVCPVTLLRQWKREAEKW 472 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s-~~~kpvLIV~P~sLl~QW~~E~~kw 472 (1231)
-.++.-+.|+|||+-++-|+...... + .++|+|+-..-..++.+.+..+
T Consensus 21 ~~li~G~~GsGKT~l~~q~l~~~~~~~g--e~vlyvs~ee~~~~l~~~~~s~ 70 (226)
T PF06745_consen 21 VVLISGPPGSGKTTLALQFLYNGLKNFG--EKVLYVSFEEPPEELIENMKSF 70 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHHT----EEEEESSS-HHHHHHHHHTT
T ss_pred EEEEEeCCCCCcHHHHHHHHHHhhhhcC--CcEEEEEecCCHHHHHHHHHHc
Confidence 35788899999999999888766544 3 5889999776667777777665
No 429
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=37.85 E-value=93 Score=37.76 Aligned_cols=20 Identities=25% Similarity=0.140 Sum_probs=15.6
Q ss_pred CcEEEEeCCCchHHHHHHHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSF 440 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~ 440 (1231)
...||.-..|+|||-.+-.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~li 68 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLI 68 (436)
T ss_pred ceeEEECCCCCCHHHHHHHH
Confidence 36799999999999765433
No 430
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=37.67 E-value=1.8e+02 Score=27.69 Aligned_cols=95 Identities=19% Similarity=0.095 Sum_probs=57.6
Q ss_pred CCcchHHHHHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhCCCCceE
Q 044798 742 PERSEKMKVVAQVLKVWKD--QGHRVLLFAQTQQMLDILESFLIASG---YEYRRMDGLTPVKQRMALIDEYNNSSDVFI 816 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~--~g~KVLVFSQ~~~~LdiLe~~L~~~G---i~~~rIdGsts~~eRq~iId~Fn~d~~i~V 816 (1231)
+..+||...+..++..... ...++||++........+...+.... ..+..+++........ .... ....+
T Consensus 8 ~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~i 82 (144)
T cd00046 8 PTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQE---KLLS--GKTDI 82 (144)
T ss_pred CCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHH---HHhc--CCCCE
Confidence 4568898887777776654 45799999999888777766665543 7777788776544433 1112 23466
Q ss_pred EEEeccccccccCC----CCCCEEEEcCC
Q 044798 817 FILTTKVGGLGTNL----TGANRVIIFDP 841 (1231)
Q Consensus 817 fLlSTkvGg~GLNL----t~AnrVIi~Dp 841 (1231)
++.+.......+.. .....+|++|-
T Consensus 83 ~i~t~~~~~~~~~~~~~~~~~~~~iiiDE 111 (144)
T cd00046 83 VVGTPGRLLDELERLKLSLKKLDLLILDE 111 (144)
T ss_pred EEECcHHHHHHHHcCCcchhcCCEEEEeC
Confidence 66665544333322 22344555553
No 431
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=37.59 E-value=34 Score=41.15 Aligned_cols=77 Identities=19% Similarity=0.054 Sum_probs=51.6
Q ss_pred ccCCcccChhhhhhchHHHHHHHHHHHHH-HcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHH
Q 044798 388 LEGGLKIPESIFNNLFDYQKVGVQWLWEL-HCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWK 466 (1231)
Q Consensus 388 ~~~~~~iP~~i~~~L~pyQkegV~wL~el-~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~ 466 (1231)
+.+++.+|+.+..++.=|=.. ++|... .....|.+|--..|+|||+++=+++..+ .-++++|....+...|.
T Consensus 117 ~~g~~~~~p~f~dk~~~hi~k--n~l~~~~ik~PlgllL~GPPGcGKTllAraiA~el-----g~~~i~vsa~eL~sk~v 189 (413)
T PLN00020 117 LVGGYYIAPAFMDKVAVHIAK--NFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKM-----GIEPIVMSAGELESENA 189 (413)
T ss_pred hcCccccCHHHHHHHHHHHHh--hhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHc-----CCCeEEEEHHHhhcCcC
Confidence 358889999887765443322 223211 2345677888999999999988777665 23567777778888887
Q ss_pred HHHHH
Q 044798 467 REAEK 471 (1231)
Q Consensus 467 ~E~~k 471 (1231)
-|=.+
T Consensus 190 GEsEk 194 (413)
T PLN00020 190 GEPGK 194 (413)
T ss_pred CcHHH
Confidence 66544
No 432
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=37.30 E-value=90 Score=37.95 Aligned_cols=103 Identities=17% Similarity=0.201 Sum_probs=72.7
Q ss_pred chHHHHHHHHHHHHHhcCCeEEEEec-cHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccc
Q 044798 745 SEKMKVVAQVLKVWKDQGHRVLLFAQ-TQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKV 823 (1231)
Q Consensus 745 S~Kl~~L~eLLk~~~~~g~KVLVFSQ-~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkv 823 (1231)
+.-|.++...+-.+.+.|+++|+... |-.+..++..+|++.|+.+..++..........++. +
T Consensus 85 sSGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~----~------------ 148 (396)
T COG0626 85 SSGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE----P------------ 148 (396)
T ss_pred cCcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc----c------------
Confidence 55667777766666677888888866 888889999999999999998888775443332221 1
Q ss_pred cccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCH
Q 044798 824 GGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875 (1231)
Q Consensus 824 Gg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTI 875 (1231)
-..+|+++.|-||...++=+.++.|+-.... ..+++.||+
T Consensus 149 ---------~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g---~~vvVDNTf 188 (396)
T COG0626 149 ---------NTKLVFLETPSNPLLEVPDIPAIARLAKAYG---ALVVVDNTF 188 (396)
T ss_pred ---------CceEEEEeCCCCcccccccHHHHHHHHHhcC---CEEEEECCc
Confidence 2457888999999988877777777654444 335666664
No 433
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=37.26 E-value=1.2e+02 Score=39.81 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=17.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 044798 423 GIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L 444 (1231)
.++.-++|+|||..|-++...+
T Consensus 487 ~lf~Gp~GvGKT~lA~~la~~l 508 (731)
T TIGR02639 487 FLFTGPTGVGKTELAKQLAEAL 508 (731)
T ss_pred EEEECCCCccHHHHHHHHHHHh
Confidence 4789999999998877766544
No 434
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=37.04 E-value=2.1e+02 Score=34.76 Aligned_cols=40 Identities=18% Similarity=0.294 Sum_probs=32.0
Q ss_pred cEEEEeCCcccCCcchHHHHHHHhc-----ccccEEEecccCccC
Q 044798 559 GYAVLDEGHRIRNPNAEISLVCKQL-----QTVHRIIMTGAPIQN 598 (1231)
Q Consensus 559 d~VILDEAH~IKN~~Sk~skalk~L-----~t~~RllLTGTPiqN 598 (1231)
-++|||-|+.++..++.....+..+ ...-+|+++.++..+
T Consensus 117 ~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~ 161 (438)
T KOG2543|consen 117 VFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEK 161 (438)
T ss_pred EEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHH
Confidence 4899999999999999888777776 335678888887554
No 435
>PRK14701 reverse gyrase; Provisional
Probab=36.85 E-value=1.6e+02 Score=42.19 Aligned_cols=80 Identities=13% Similarity=0.120 Sum_probs=55.8
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHH------cCCcEEEEeCCCCHHHHHHHHHHHhCCCCce
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIA------SGYEYRRMDGLTPVKQRMALIDEYNNSSDVF 815 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~------~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~ 815 (1231)
+..+||..+..-+.......|.++||.+.++..+.-+...|.. .++.++.++|+++..++..+++.+.++ .+.
T Consensus 102 PTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g-~~d 180 (1638)
T PRK14701 102 PTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENG-DFD 180 (1638)
T ss_pred cCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcC-CCC
Confidence 4568888743322222233577999999998877666665554 256778899999999998889888875 456
Q ss_pred EEEEecc
Q 044798 816 IFILTTK 822 (1231)
Q Consensus 816 VfLlSTk 822 (1231)
|++.|+.
T Consensus 181 ILV~TPg 187 (1638)
T PRK14701 181 ILVTTAQ 187 (1638)
T ss_pred EEEECCc
Confidence 7666654
No 436
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=36.70 E-value=2.8e+02 Score=30.74 Aligned_cols=33 Identities=33% Similarity=0.456 Sum_probs=25.4
Q ss_pred CCcEEEEeC-----CcchHHHHHHHHHHcCCCeEEEEe
Q 044798 450 YKPSIVVCP-----VTLLRQWKREAEKWYPSFHVELLH 482 (1231)
Q Consensus 450 ~kpvLIV~P-----~sLl~QW~~E~~kw~p~lrV~il~ 482 (1231)
..|++|-.| ++|+.-+.+++.+..|+.+|..++
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 357788888 478888999999988888877665
No 437
>PRK05973 replicative DNA helicase; Provisional
Probab=36.10 E-value=77 Score=35.83 Aligned_cols=50 Identities=14% Similarity=0.050 Sum_probs=34.8
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEK 471 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~k 471 (1231)
+.-.+|+..+|+|||+-++-|+...... ..++++++--.--.+-...+..
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~--Ge~vlyfSlEes~~~i~~R~~s 113 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKS--GRTGVFFTLEYTEQDVRDRLRA 113 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEEeCCHHHHHHHHHH
Confidence 3446889999999999999888766533 4688888865444444444433
No 438
>CHL00195 ycf46 Ycf46; Provisional
Probab=36.08 E-value=58 Score=40.65 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=20.4
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
...|.+|.-..|+|||..+=++...+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~ 283 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDW 283 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHh
Confidence 35688899999999999887665543
No 439
>PRK13766 Hef nuclease; Provisional
Probab=36.07 E-value=5e+02 Score=34.24 Aligned_cols=116 Identities=15% Similarity=0.171 Sum_probs=67.5
Q ss_pred CCcchHHHHHHHHHHH-HHhcCCeEEEEeccHHHHHHHHHHHHHc-C---CcEEEEeCCCCHHHHHHHHHHHhCCCCceE
Q 044798 742 PERSEKMKVVAQVLKV-WKDQGHRVLLFAQTQQMLDILESFLIAS-G---YEYRRMDGLTPVKQRMALIDEYNNSSDVFI 816 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~-~~~~g~KVLVFSQ~~~~LdiLe~~L~~~-G---i~~~rIdGsts~~eRq~iId~Fn~d~~i~V 816 (1231)
+..+||..+..-++.. +...+.++||.+.......-....+... + ..+..++|.++..+|..+.. . ..|
T Consensus 37 ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~r~~~~~---~---~~i 110 (773)
T PRK13766 37 PTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEKIVVFTGEVSPEKRAELWE---K---AKV 110 (773)
T ss_pred CCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHh---C---CCE
Confidence 4568888744333332 2345679999999987775555555432 3 47889999999888865543 2 357
Q ss_pred EEEeccccc-----cccCCCCCCEEEEcCCCCCcch-HHHHHHhHHhhCCccc
Q 044798 817 FILTTKVGG-----LGTNLTGANRVIIFDPDWNPST-DVQARERAWRIGQKQD 863 (1231)
Q Consensus 817 fLlSTkvGg-----~GLNLt~AnrVIi~Dp~WNPs~-d~QAigRa~RiGQkk~ 863 (1231)
+++|..... .-+++...+.||+=+..--... -.-.+.+.+|.....+
T Consensus 111 iv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~~ 163 (773)
T PRK13766 111 IVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKNP 163 (773)
T ss_pred EEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCCC
Confidence 777765442 2345566666666554421111 1123445555554443
No 440
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=35.87 E-value=1.4e+02 Score=35.53 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=19.2
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
++-.+++-.+|+|||...-+++..+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i 146 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYI 146 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 3445789999999998877776654
No 441
>PRK10824 glutaredoxin-4; Provisional
Probab=35.77 E-value=1.6e+02 Score=29.66 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=43.7
Q ss_pred CCeEEEEec------cHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhC-CCCceEEEEecccccc
Q 044798 762 GHRVLLFAQ------TQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGGL 826 (1231)
Q Consensus 762 g~KVLVFSQ------~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~-d~~i~VfLlSTkvGg~ 826 (1231)
.++|+||+- +-........+|...|+.|..++=......|.. +..+.. ..-..||+=..-+||.
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~-l~~~sg~~TVPQIFI~G~~IGG~ 84 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAE-LPKYANWPTFPQLWVDGELVGGC 84 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHH-HHHHhCCCCCCeEEECCEEEcCh
Confidence 469999987 456788888999999988777665555555554 444443 2234777766667763
No 442
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=35.69 E-value=2.5e+02 Score=33.00 Aligned_cols=43 Identities=19% Similarity=0.300 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCC---CcEEEEeCCCchHHHHHHHHHHHHhhcC
Q 044798 406 QKVGVQWLWELHCQR---AGGIIGDEMGLGKTIQVLSFLGALHFSN 448 (1231)
Q Consensus 406 QkegV~wL~el~~~~---~GgILADEMGLGKTIqaIA~L~~L~~s~ 448 (1231)
|...+..+......+ ..-++.-+.|.||+..|.+|+..+....
T Consensus 9 q~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~ 54 (314)
T PRK07399 9 QPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG 54 (314)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 555566665554444 3457889999999999999999887654
No 443
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.68 E-value=3.7e+02 Score=32.73 Aligned_cols=109 Identities=18% Similarity=0.279 Sum_probs=77.2
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccH---HHHHHHHHHHHHcCCcEE-EEeCCCCHHHHHHHHHHHhCCCCceEE
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQ---QMLDILESFLIASGYEYR-RMDGLTPVKQRMALIDEYNNSSDVFIF 817 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~---~~LdiLe~~L~~~Gi~~~-rIdGsts~~eRq~iId~Fn~d~~i~Vf 817 (1231)
...++|...+..+...++.+|.|+.+.|--+ ...|.|...-.+.+++|. .++..-+..--.+-+++|... ++.|+
T Consensus 109 LqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~fKke-~fdvI 187 (483)
T KOG0780|consen 109 LQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRFKKE-NFDVI 187 (483)
T ss_pred ccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHHHhc-CCcEE
Confidence 4578999999999999999999998888643 346777777777788855 445556777778899999987 78888
Q ss_pred EEeccccccc------------cCCCCCCEEEE-cCCCCCcchHHHHH
Q 044798 818 ILTTKVGGLG------------TNLTGANRVII-FDPDWNPSTDVQAR 852 (1231)
Q Consensus 818 LlSTkvGg~G------------LNLt~AnrVIi-~Dp~WNPs~d~QAi 852 (1231)
|+-| .|-.- -|...-+.||+ +|..---+.+.||.
T Consensus 188 IvDT-SGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~ 234 (483)
T KOG0780|consen 188 IVDT-SGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQAR 234 (483)
T ss_pred EEeC-CCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHH
Confidence 8776 23211 12233444544 77776666677764
No 444
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=35.50 E-value=92 Score=40.88 Aligned_cols=41 Identities=12% Similarity=0.109 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHhcccCCCCChHHHHHHHHhh
Q 044798 1165 PEILIRQICTFMQQRGGSSNSACIVEHFKDRVPSKDLPLFKNLLKEI 1211 (1231)
Q Consensus 1165 ~~~~~~~~~~~~~~~~~~~~t~~~~~~f~~~~~~~~~~~f~~~l~~~ 1211 (1231)
....+.-|..|+...+. .-+.| ...+++.+.+.|+++|.++
T Consensus 665 ~~i~~~~i~~~~~~~~~--~~~~i----~~~~~~~~~~~~~~~~~~~ 705 (725)
T PRK13341 665 LGIDSKLIKRWLAQGPD--YRQAL----ATNLEEERICNLDEELTRI 705 (725)
T ss_pred cccCHHHHHHHHhcCCc--HHHHH----hccCCHHHHHHHHHHHHHH
Confidence 45667788889876653 22223 2346678888888888754
No 445
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=35.08 E-value=3.3e+02 Score=33.62 Aligned_cols=35 Identities=20% Similarity=0.054 Sum_probs=24.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP 458 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P 458 (1231)
.+++-..|.|||.++.-++..+.... ..++++|+=
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~~~-g~kV~lV~~ 136 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKKKQ-GKKVLLVAC 136 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHhC-CCeEEEEec
Confidence 56889999999999888877764322 245555544
No 446
>PRK09183 transposase/IS protein; Provisional
Probab=34.77 E-value=1e+02 Score=35.05 Aligned_cols=51 Identities=12% Similarity=0.044 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcch
Q 044798 406 QKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLL 462 (1231)
Q Consensus 406 QkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl 462 (1231)
+..++.|+ ..+.+.+|.-+.|+|||..+.++...+... ...++++....++
T Consensus 92 ~L~~~~~i----~~~~~v~l~Gp~GtGKThLa~al~~~a~~~--G~~v~~~~~~~l~ 142 (259)
T PRK09183 92 SLRSLSFI----ERNENIVLLGPSGVGKTHLAIALGYEAVRA--GIKVRFTTAADLL 142 (259)
T ss_pred HHhcCCch----hcCCeEEEEeCCCCCHHHHHHHHHHHHHHc--CCeEEEEeHHHHH
Confidence 34455564 456677888899999999888776554432 2466665544444
No 447
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=34.72 E-value=1.8e+02 Score=33.12 Aligned_cols=21 Identities=29% Similarity=0.262 Sum_probs=14.1
Q ss_pred CCCcEEEEeCCCchHHHHHHH
Q 044798 419 QRAGGIIGDEMGLGKTIQVLS 439 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA 439 (1231)
.+..+++--+.|+|||..+-.
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~ 35 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQS 35 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 445556666799999964433
No 448
>PRK06646 DNA polymerase III subunit chi; Provisional
Probab=34.23 E-value=83 Score=33.27 Aligned_cols=43 Identities=7% Similarity=0.094 Sum_probs=39.8
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS 785 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~ 785 (1231)
..+.+..++..|+.+....|.|++|+|....++..|-.+|...
T Consensus 10 ~~~~~~~~acrL~~Ka~~~G~rv~I~~~d~~~~~~LD~~LWtf 52 (154)
T PRK06646 10 SDELLLKSILLLIEKCYYSDLKSVILTADADQQEMLNKNLWTY 52 (154)
T ss_pred CCChHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhcCC
Confidence 5788999999999999999999999999999999999999754
No 449
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=34.21 E-value=95 Score=35.29 Aligned_cols=37 Identities=27% Similarity=0.345 Sum_probs=26.5
Q ss_pred EEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEE--eCCcch
Q 044798 424 IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVV--CPVTLL 462 (1231)
Q Consensus 424 ILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV--~P~sLl 462 (1231)
|.+--=|.|||-.+.++...|...+ +++|+| +|.+++
T Consensus 6 i~s~kGGvG~TTltAnLA~aL~~~G--~~VlaID~dpqN~L 44 (243)
T PF06564_consen 6 IVSPKGGVGKTTLTANLAWALARLG--ESVLAIDLDPQNLL 44 (243)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHCC--CcEEEEeCCcHHHH
Confidence 4444558999999999988887765 466665 665555
No 450
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.01 E-value=1.4e+02 Score=36.05 Aligned_cols=43 Identities=23% Similarity=0.254 Sum_probs=27.1
Q ss_pred EEeCCCHHHHHHHHHHHHHHHHHHHhcCcchhcccCHhHHHHhh
Q 044798 869 LITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLF 912 (1231)
Q Consensus 869 Lit~gTIEEkIy~rQ~~K~~L~n~vl~d~~~~r~f~~~dl~dLF 912 (1231)
|+.-|.||--+-+.|...+.-...+++.- ....|+..|+++-|
T Consensus 294 lLGmGDi~glvek~~ev~~~d~~el~~kl-~~gkFtlrd~y~Qf 336 (483)
T KOG0780|consen 294 LLGMGDIEGLVEKVQEVGKDDAKELVEKL-KQGKFTLRDFYDQF 336 (483)
T ss_pred HhccccHHHHHHHHHHHhhhhHHHHHHHH-HhCCccHHHHHHHH
Confidence 56677888777777776644444444322 23457777777766
No 451
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=33.98 E-value=1.4e+02 Score=35.51 Aligned_cols=41 Identities=22% Similarity=0.167 Sum_probs=26.3
Q ss_pred cCCCcEEEEeCCCchHHHHHHHHHHHH----hh----cCCCCcEEEEeC
Q 044798 418 CQRAGGIIGDEMGLGKTIQVLSFLGAL----HF----SNMYKPSIVVCP 458 (1231)
Q Consensus 418 ~~~~GgILADEMGLGKTIqaIA~L~~L----~~----s~~~kpvLIV~P 458 (1231)
.++.+.||+.+-|+|||...|-+..++ .. ....+.+|+|.-
T Consensus 87 r~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvsl 135 (402)
T COG3598 87 RKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSL 135 (402)
T ss_pred hcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEe
Confidence 456788999999999998755443332 11 123466777654
No 452
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=33.18 E-value=5e+02 Score=31.63 Aligned_cols=47 Identities=19% Similarity=0.162 Sum_probs=33.4
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHH
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREA 469 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~ 469 (1231)
=.||+..+|+|||.-++.++..+.. ....++++++.-.-..++...+
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~-~~g~~v~~fSlEm~~~~l~~Rl 242 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVAL-REGKPVLFFSLEMSAEQLGERL 242 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHH-hCCCcEEEEECCCCHHHHHHHH
Confidence 3588999999999998888755532 2246899998765555554443
No 453
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=32.92 E-value=4.6e+02 Score=32.00 Aligned_cols=47 Identities=17% Similarity=0.046 Sum_probs=33.6
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHH
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREA 469 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~ 469 (1231)
=.+|+..+|+|||.-++.++...... ...++|+++.-.-..+....+
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~-~g~~vl~~SlEm~~~~i~~R~ 243 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIK-EGKPVAFFSLEMSAEQLAMRM 243 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHh-CCCeEEEEeCcCCHHHHHHHH
Confidence 35889999999999888887665432 236899998866555554444
No 454
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=32.66 E-value=91 Score=36.66 Aligned_cols=50 Identities=12% Similarity=0.284 Sum_probs=31.4
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cc-----hHHHHHHHHH
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TL-----LRQWKREAEK 471 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sL-----l~QW~~E~~k 471 (1231)
-|++.-.+|+||+--.=.+|..-+-......+.+|+|. .+ +.-|.-++.+
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~E 144 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCE 144 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHh
Confidence 47888999999995433333333333445678999993 33 2337666654
No 455
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=32.53 E-value=1.9e+02 Score=25.57 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=36.4
Q ss_pred eEEEEe-ccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCC
Q 044798 764 RVLLFA-QTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNS 811 (1231)
Q Consensus 764 KVLVFS-Q~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d 811 (1231)
|+.||+ .+-.....+..+|...|+.|..++-......++.+.......
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~~ 49 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGGR 49 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCC
Confidence 466775 344667788888999999999999988877777777766543
No 456
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=32.47 E-value=85 Score=37.53 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=48.6
Q ss_pred chHHHHHHHHHHHHHHc--CCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHH---HHHHHHc
Q 044798 402 LFDYQKVGVQWLWELHC--QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWK---REAEKWY 473 (1231)
Q Consensus 402 L~pyQkegV~wL~el~~--~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~---~E~~kw~ 473 (1231)
|-+-|+..+.++.+... .+...+|.-.-|+|||...=+++..+.. ..+.+++++|..+...-. ..+|.++
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~--~~~~~~~~a~tg~AA~~i~~G~T~hs~f 76 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS--RGKKVLVTAPTGIAAFNIPGGRTIHSFF 76 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc--ccceEEEecchHHHHHhccCCcchHHhc
Confidence 56779999888876653 3445578889999999887666665543 346899999975544332 3455554
No 457
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=31.83 E-value=2.3e+02 Score=38.26 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=56.0
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccH----HHHHHHHHHHHHcC-CcEEE-EeCCCCHHHHHHHHHHHhCCCCce
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQ----QMLDILESFLIASG-YEYRR-MDGLTPVKQRMALIDEYNNSSDVF 815 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~----~~LdiLe~~L~~~G-i~~~r-IdGsts~~eRq~iId~Fn~d~~i~ 815 (1231)
|...||....+-+---+...|.|+++...++ ++.+.|+.+....| +.... +||.++..++++++++|.++ +..
T Consensus 105 PTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~g-dfd 183 (1187)
T COG1110 105 PTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESG-DFD 183 (1187)
T ss_pred CCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcC-Ccc
Confidence 4556777765544444455677887776654 45666777776666 43333 89999999999999999998 566
Q ss_pred EEEEecccc
Q 044798 816 IFILTTKVG 824 (1231)
Q Consensus 816 VfLlSTkvG 824 (1231)
|++.|+.-.
T Consensus 184 IlitTs~FL 192 (1187)
T COG1110 184 ILITTSQFL 192 (1187)
T ss_pred EEEEeHHHH
Confidence 766555443
No 458
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=31.80 E-value=1.4e+02 Score=36.23 Aligned_cols=46 Identities=26% Similarity=0.330 Sum_probs=32.2
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEK 471 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~k 471 (1231)
+|.++.-..|+|||+.|=|+.... ...+.=|.-.+|...|.-|-++
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc-----~tTFFNVSsstltSKwRGeSEK 291 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATEC-----GTTFFNVSSSTLTSKWRGESEK 291 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhh-----cCeEEEechhhhhhhhccchHH
Confidence 478899999999999877665432 1334445557888888766555
No 459
>PRK05636 replicative DNA helicase; Provisional
Probab=31.71 E-value=3.8e+02 Score=33.75 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=32.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHH
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREA 469 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~ 469 (1231)
.||+..+|+|||.-++.++...... ...++++++.-.-..|+..-+
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~-~g~~v~~fSlEMs~~ql~~R~ 313 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIK-HNKASVIFSLEMSKSEIVMRL 313 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEeeCCHHHHHHHH
Confidence 4889999999998888776554322 236889998866666665544
No 460
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=31.63 E-value=93 Score=32.28 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=38.7
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS 785 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~ 785 (1231)
....+..++..|+.+....|+||+|+|.....++.|-..|...
T Consensus 10 ~~~~~~~~~c~L~~ka~~~g~rv~I~~~d~~~a~~lD~~LW~~ 52 (142)
T PRK05728 10 TLSALEALLCELAEKALRAGWRVLVQCEDEEQAEALDEALWTF 52 (142)
T ss_pred CchhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhcCC
Confidence 3567889999999999999999999999999999999999764
No 461
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=31.58 E-value=1.2e+02 Score=38.08 Aligned_cols=47 Identities=21% Similarity=0.269 Sum_probs=34.3
Q ss_pred EEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHH
Q 044798 424 IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKW 472 (1231)
Q Consensus 424 ILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw 472 (1231)
++..++|+|||.-+..|+...... ..++++|+-.....+-.+.+..+
T Consensus 277 li~G~~G~GKT~l~~~~~~~~~~~--g~~~~yis~e~~~~~i~~~~~~~ 323 (509)
T PRK09302 277 LVSGATGTGKTLLASKFAEAACRR--GERCLLFAFEESRAQLIRNARSW 323 (509)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHhC--CCcEEEEEecCCHHHHHHHHHHc
Confidence 668899999999999888766443 36888887765555655555544
No 462
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.47 E-value=5e+02 Score=33.58 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=19.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhh
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
-|+.-+.|.|||..+..+...+..
T Consensus 42 yLf~Gp~G~GKtt~A~~lAk~l~c 65 (614)
T PRK14971 42 YLFCGPRGVGKTTCARIFAKTINC 65 (614)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 578999999999987777776653
No 463
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=31.37 E-value=1e+02 Score=33.79 Aligned_cols=48 Identities=19% Similarity=0.030 Sum_probs=35.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHH
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKW 472 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw 472 (1231)
.+++.+.|+|||.-++.++...... ..++++|+-..-..+-.+.+..+
T Consensus 19 ~li~G~~G~GKt~~~~~~~~~~~~~--g~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 19 IVVIGEYGTGKTTFSLQFLYQGLKN--GEKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHHHc
Confidence 3678899999999988887665433 47899999877666666666554
No 464
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=31.23 E-value=99 Score=37.68 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=17.5
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHHh
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L~ 445 (1231)
.+..++|....|.|||..+-.+...+.
T Consensus 168 kGQR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred cCceEEEeCCCCCChhHHHHHHHHHHH
Confidence 344455556799999976665554443
No 465
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=31.14 E-value=2.5e+02 Score=34.86 Aligned_cols=56 Identities=9% Similarity=-0.024 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHc-----CCCcEEEEeCCCchHHHHHHHHHHHHhh-cCCC-CcEEEEeCC
Q 044798 404 DYQKVGVQWLWELHC-----QRAGGIIGDEMGLGKTIQVLSFLGALHF-SNMY-KPSIVVCPV 459 (1231)
Q Consensus 404 pyQkegV~wL~el~~-----~~~GgILADEMGLGKTIqaIA~L~~L~~-s~~~-kpvLIV~P~ 459 (1231)
|+|+..+..++--.. .-.-++|.-.=|-|||..+.++..+... .+.. .-++++++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~ 63 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANT 63 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCC
Confidence 678876665543211 1124666677899999876666554433 2333 346666663
No 466
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=31.03 E-value=1.5e+02 Score=39.54 Aligned_cols=53 Identities=21% Similarity=0.231 Sum_probs=47.3
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCC
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGL 795 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGs 795 (1231)
...||...+..+++.+...|.|||+-|.+...+|-|-.-|...|+.++|+--.
T Consensus 694 PGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~~ 746 (1100)
T KOG1805|consen 694 PGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGSE 746 (1100)
T ss_pred CCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCCc
Confidence 36899999999999999999999999999999999999999889998887543
No 467
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=30.91 E-value=7.5e+02 Score=29.83 Aligned_cols=47 Identities=19% Similarity=0.046 Sum_probs=32.2
Q ss_pred hchHHHHHHHHHHHHHHcC---CCcEEEEeCCCchHHHHHHHHHHHHhhc
Q 044798 401 NLFDYQKVGVQWLWELHCQ---RAGGIIGDEMGLGKTIQVLSFLGALHFS 447 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~---~~GgILADEMGLGKTIqaIA~L~~L~~s 447 (1231)
.-++-|..-+...+.-... ..+.++.-.+|+|||.++--++..+...
T Consensus 20 ~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~ 69 (366)
T COG1474 20 PHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEES 69 (366)
T ss_pred cccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhh
Confidence 4477787777655443222 2358888999999999987776666543
No 468
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=30.74 E-value=67 Score=34.62 Aligned_cols=59 Identities=25% Similarity=0.224 Sum_probs=38.0
Q ss_pred HHhhhhcCCccEEEEeCCcccCCc----chHHHHHHHhcccccEEEecccCccCChHHHHHhhhhh
Q 044798 549 LGEKLLDVEWGYAVLDEGHRIRNP----NAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFV 610 (1231)
Q Consensus 549 ~~~~L~~~~wd~VILDEAH~IKN~----~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL 610 (1231)
..+.+....||+|||||.-..-+. ...+...+..-...--++|||.- -+.+|..+.|++
T Consensus 89 a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~---~p~~l~e~AD~V 151 (173)
T TIGR00708 89 AKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRG---CPQDLLELADLV 151 (173)
T ss_pred HHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCC---CCHHHHHhCcee
Confidence 344566778999999998644332 23444555544555579999974 456666666655
No 469
>PHA00012 I assembly protein
Probab=30.70 E-value=1.3e+02 Score=35.91 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=17.8
Q ss_pred EEeCCCchHHHHHHHHHHHHhhcC
Q 044798 425 IGDEMGLGKTIQVLSFLGALHFSN 448 (1231)
Q Consensus 425 LADEMGLGKTIqaIA~L~~L~~s~ 448 (1231)
+---+|.|||+.+++-|......|
T Consensus 6 ITGkPGSGKSl~aV~~I~~~L~~G 29 (361)
T PHA00012 6 VTGKLGAGKTLVAVSRIQDKLVKG 29 (361)
T ss_pred EecCCCCCchHHHHHHHHHHHHcC
Confidence 445689999999998666655554
No 470
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=30.65 E-value=14 Score=49.73 Aligned_cols=123 Identities=26% Similarity=0.299 Sum_probs=111.2
Q ss_pred CeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCC
Q 044798 763 HRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPD 842 (1231)
Q Consensus 763 ~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~ 842 (1231)
.|+|||+|+...+|.++..+..+++.+.+..++- .-...+..|.+ +.|||+-+..|+-||||..|.||++.+|-
T Consensus 1222 ekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~---d~~dc~~~fk~---I~clll~~~~~~~GLNL~eA~Hvfl~ePi 1295 (1394)
T KOG0298|consen 1222 EKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETE---DFDDCIICFKS---IDCLLLFVSKGSKGLNLIEATHVFLVEPI 1295 (1394)
T ss_pred ceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCc---chhhhhhhccc---ceEEEEEeccCcccccHHhhhhhheeccc
Confidence 5999999999999999999999999988877643 34456777764 89999999999999999999999999999
Q ss_pred CCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 044798 843 WNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTN 891 (1231)
Q Consensus 843 WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~rQ~~K~~L~n 891 (1231)
-||..+.||+||+||+||++++.|||++..+|+||.||.....|.....
T Consensus 1296 LN~~~E~QAigRvhRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee~l~ 1344 (1394)
T KOG0298|consen 1296 LNPGDEAQAIGRVHRIGQKRPTFVHRFIVNETVEENILSLITSKEETLT 1344 (1394)
T ss_pred cCchHHHhhhhhhhhcccccchhhhhhhhccchHHHHHHHhhhhHHHHh
Confidence 9999999999999999999999999999999999999998887765543
No 471
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=30.53 E-value=3.3e+02 Score=28.95 Aligned_cols=73 Identities=19% Similarity=0.279 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc--CCcEEE-EeCCCCHHHHHHHHHHHhCCCCceEEEEec
Q 044798 748 MKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS--GYEYRR-MDGLTPVKQRMALIDEYNNSSDVFIFILTT 821 (1231)
Q Consensus 748 l~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~--Gi~~~r-IdGsts~~eRq~iId~Fn~d~~i~VfLlST 821 (1231)
...+..+++.....+.++-++......++.+...|+.. |+.++- .+|-....+...+++..+.. ...++++..
T Consensus 32 ~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~-~pdiv~vgl 107 (171)
T cd06533 32 SDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINAS-GADILFVGL 107 (171)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHc-CCCEEEEEC
Confidence 34566777777777889999999999999999988876 677665 68888887777788888875 345555543
No 472
>PRK05748 replicative DNA helicase; Provisional
Probab=30.50 E-value=6.5e+02 Score=31.01 Aligned_cols=48 Identities=13% Similarity=-0.044 Sum_probs=35.4
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHH
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAE 470 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~ 470 (1231)
=.|||..+|+|||.-++.++...... ...++++++.-.-..|+...+-
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~-~g~~v~~fSlEms~~~l~~R~l 252 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATK-TDKNVAIFSLEMGAESLVMRML 252 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHh-CCCeEEEEeCCCCHHHHHHHHH
Confidence 35889999999999988887665322 2468999988766666665553
No 473
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=30.26 E-value=4.9e+02 Score=26.43 Aligned_cols=93 Identities=16% Similarity=0.156 Sum_probs=57.6
Q ss_pred CCCcchHHHHHH-HHHHHHHhc-CCeEEEEeccHHHHHHHHHHHHHc----CCcEEEEeCCCCHH-HHHHHHHHHhCCCC
Q 044798 741 NPERSEKMKVVA-QVLKVWKDQ-GHRVLLFAQTQQMLDILESFLIAS----GYEYRRMDGLTPVK-QRMALIDEYNNSSD 813 (1231)
Q Consensus 741 ~~~~S~Kl~~L~-eLLk~~~~~-g~KVLVFSQ~~~~LdiLe~~L~~~----Gi~~~rIdGsts~~-eRq~iId~Fn~d~~ 813 (1231)
.+..+||-.+.. -++..+.+. ..++||.+.+....+-+...+... ++.+..++|..+.. .....+ .. .
T Consensus 21 aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~ 95 (169)
T PF00270_consen 21 APTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLLHGGQSISEDQREVL---SN--Q 95 (169)
T ss_dssp CSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEESTTSCHHHHHHHHH---HT--T
T ss_pred CCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccccccccccccccccc---cc--c
Confidence 345789988776 444445443 239999999988776666655543 56889999988855 222333 22 3
Q ss_pred ceEEEEecccccc-----ccCCCCCCEEEE
Q 044798 814 VFIFILTTKVGGL-----GTNLTGANRVII 838 (1231)
Q Consensus 814 i~VfLlSTkvGg~-----GLNLt~AnrVIi 838 (1231)
+.|++.|....-. .+++...+.||+
T Consensus 96 ~~ilv~T~~~l~~~~~~~~~~~~~~~~iVi 125 (169)
T PF00270_consen 96 ADILVTTPEQLLDLISNGKINISRLSLIVI 125 (169)
T ss_dssp SSEEEEEHHHHHHHHHTTSSTGTTESEEEE
T ss_pred ccccccCcchhhccccccccccccceeecc
Confidence 4677777654422 235666555444
No 474
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=30.22 E-value=1.3e+02 Score=31.81 Aligned_cols=54 Identities=19% Similarity=0.080 Sum_probs=36.2
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhc--------CCCCcEEEEeCCcchHHHHHHHHHHc
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFS--------NMYKPSIVVCPVTLLRQWKREAEKWY 473 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s--------~~~kpvLIV~P~sLl~QW~~E~~kw~ 473 (1231)
+.=++++...|.|||..++.++..+... ....++|+|..-.-..++.+-+..+.
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~~~ 93 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRALL 93 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHHHh
Confidence 3447889999999999988888776531 13468899888766667666666654
No 475
>smart00707 RPEL Repeat in Drosophila CG10860, human KIAA0680 and C. elegans F26H9.2.
Probab=30.14 E-value=31 Score=25.70 Aligned_cols=14 Identities=36% Similarity=0.627 Sum_probs=12.0
Q ss_pred hhhHHHHhccCCCc
Q 044798 220 KRDELVRKGILTPF 233 (1231)
Q Consensus 220 ~~~~~~~~~~~~~~ 233 (1231)
.|+|||++|||.+.
T Consensus 12 ~~eeLv~r~IL~~~ 25 (26)
T smart00707 12 TREELEERNILKEL 25 (26)
T ss_pred CHHHHHHccCCCCC
Confidence 58999999999764
No 476
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=29.93 E-value=1.3e+02 Score=36.97 Aligned_cols=79 Identities=14% Similarity=0.091 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHHcCCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCC
Q 044798 430 GLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHD 509 (1231)
Q Consensus 430 GLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw~p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~ 509 (1231)
|+|||-++.-+..++.. ....+|+||--+--.-=.+++....-...|.+|..........-.+.
T Consensus 110 GsGKTTt~~KLA~~lkk--~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~-------------- 173 (451)
T COG0541 110 GSGKTTTAGKLAKYLKK--KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKA-------------- 173 (451)
T ss_pred CCChHhHHHHHHHHHHH--cCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHH--------------
Q ss_pred CCccCcccCCCcchhhHHHHhhhcCCCCEEEe
Q 044798 510 SDYEGNLSSRNPKKWDLLINRVLRSESGLLIT 541 (1231)
Q Consensus 510 ~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvIt 541 (1231)
-+.......++|+|.
T Consensus 174 -----------------al~~ak~~~~DvvIv 188 (451)
T COG0541 174 -----------------ALEKAKEEGYDVVIV 188 (451)
T ss_pred -----------------HHHHHHHcCCCEEEE
No 477
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=29.83 E-value=8.4e+02 Score=30.19 Aligned_cols=132 Identities=12% Similarity=0.015 Sum_probs=0.0
Q ss_pred EEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC---CcchHHHHHHHHHHcCCCeEEEEecccchhhhhhhhccCCCC
Q 044798 424 IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP---VTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDT 500 (1231)
Q Consensus 424 ILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P---~sLl~QW~~E~~kw~p~lrV~il~gs~~~~~~~~kr~~~~~~ 500 (1231)
.++--.|+|||-++..+...+...+ .++++|+- ......|.+.+..- .+..++........
T Consensus 104 ~lvG~~GvGKTTtaaKLA~~l~~~G--~kV~lV~~D~~R~aA~eQLk~~a~~-~~vp~~~~~~~~dp------------- 167 (429)
T TIGR01425 104 MFVGLQGSGKTTTCTKLAYYYQRKG--FKPCLVCADTFRAGAFDQLKQNATK-ARIPFYGSYTESDP------------- 167 (429)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEcCcccchhHHHHHHHHhhc-cCCeEEeecCCCCH-------------
Q ss_pred CCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcCCccEEEEeCCcccCCcchHHHHHH
Q 044798 501 DNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVC 580 (1231)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~~wd~VILDEAH~IKN~~Sk~skal 580 (1231)
..........+....+++||+|=+-+..+.........
T Consensus 168 ------------------------------------------~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~ 205 (429)
T TIGR01425 168 ------------------------------------------VKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEML 205 (429)
T ss_pred ------------------------------------------HHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHH
Q ss_pred Hhc----ccccEEEecccCccCChHHHHHhhhhhcCC
Q 044798 581 KQL----QTVHRIIMTGAPIQNKLSELWSLFDFVFPG 613 (1231)
Q Consensus 581 k~L----~t~~RllLTGTPiqNnl~EL~SLl~FL~P~ 613 (1231)
.-. ....-++|.+|.=|+...-.-..-..+.+.
T Consensus 206 ~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~ 242 (429)
T TIGR01425 206 QVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVG 242 (429)
T ss_pred HHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCc
No 478
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=28.94 E-value=1.3e+02 Score=33.54 Aligned_cols=48 Identities=23% Similarity=0.122 Sum_probs=33.5
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAE 470 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~ 470 (1231)
.-.+++-+.|+|||+.++-|+...... ..++|+|+--....+-.+.+.
T Consensus 22 s~~lI~G~pGsGKT~la~~~l~~~~~~--ge~~lyvs~ee~~~~i~~~~~ 69 (237)
T TIGR03877 22 NVVLLSGGPGTGKSIFSQQFLWNGLQM--GEPGIYVALEEHPVQVRRNMA 69 (237)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHc--CCcEEEEEeeCCHHHHHHHHH
Confidence 345779999999999998888765433 468888886554444444444
No 479
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=28.90 E-value=73 Score=37.76 Aligned_cols=37 Identities=19% Similarity=0.079 Sum_probs=28.1
Q ss_pred HHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 408 VGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 408 egV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
....||+.+...+.+.+++-.+|+|||-..-+++..+
T Consensus 148 ~~~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~i 184 (332)
T PRK13900 148 KIKEFLEHAVISKKNIIISGGTSTGKTTFTNAALREI 184 (332)
T ss_pred HHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhC
Confidence 3446676666778889999999999998766665544
No 480
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=28.83 E-value=4.9e+02 Score=34.61 Aligned_cols=23 Identities=30% Similarity=0.088 Sum_probs=18.4
Q ss_pred cEEEEeCCCchHHHHHHHHHHHH
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L 444 (1231)
..+|.-..|+|||..+-++...+
T Consensus 349 ~lll~GppG~GKT~lAk~iA~~l 371 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLGKSIAKAL 371 (775)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999998877666554
No 481
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=28.77 E-value=1.2e+02 Score=39.37 Aligned_cols=54 Identities=19% Similarity=0.300 Sum_probs=38.8
Q ss_pred CCcccChhhhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 390 GGLKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 390 ~~~~iP~~i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
....+|+.++..+.- |.+++.-|.....++...++.-+.|+|||..+-++...+
T Consensus 21 ~~~~~~~~~~~~vig-q~~a~~~L~~~~~~~~~~l~~G~~G~GKttla~~l~~~l 74 (637)
T PRK13765 21 SDIEVPERLIDQVIG-QEHAVEVIKKAAKQRRHVMMIGSPGTGKSMLAKAMAELL 74 (637)
T ss_pred eecccCcccHHHcCC-hHHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHc
Confidence 335678777777654 556666565555566788899999999998887776554
No 482
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=28.67 E-value=28 Score=41.10 Aligned_cols=53 Identities=19% Similarity=0.004 Sum_probs=35.5
Q ss_pred chHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC
Q 044798 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP 458 (1231)
Q Consensus 402 L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P 458 (1231)
.-+-|..-+.-+.+... .-||- .-|+|||+-+.+........+..+++|.-=|
T Consensus 129 kt~~Q~~y~eai~~~di--~fGiG--pAGTGKTyLava~av~al~~~~v~rIiLtRP 181 (348)
T COG1702 129 KTPGQNMYPEAIEEHDI--VFGIG--PAGTGKTYLAVAKAVDALGAGQVRRIILTRP 181 (348)
T ss_pred cChhHHHHHHHHHhcCe--eeeec--ccccCChhhhHHhHhhhhhhcccceeeecCc
Confidence 45678777766644221 22332 8899999988887777766676677776666
No 483
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=28.41 E-value=6.6e+02 Score=29.40 Aligned_cols=46 Identities=13% Similarity=-0.031 Sum_probs=31.2
Q ss_pred chHHHHHHHHHHHHHHcCCC--cEEEEeCCCchHHHHHHHHHHHHhhcC
Q 044798 402 LFDYQKVGVQWLWELHCQRA--GGIIGDEMGLGKTIQVLSFLGALHFSN 448 (1231)
Q Consensus 402 L~pyQkegV~wL~el~~~~~--GgILADEMGLGKTIqaIA~L~~L~~s~ 448 (1231)
|...|-..+..+.....+++ .++|-.. |.||+..|..|+..+...+
T Consensus 3 l~~~q~~~~~~L~~~~~~~rl~hAyLf~G-~~G~~~~A~~~A~~llC~~ 50 (290)
T PRK07276 3 LKQKQPKVFQRFQTILEQDRLNHAYLFSG-DFASFEMALFLAQSLFCEQ 50 (290)
T ss_pred HHHHHHHHHHHHHHHHHcCCcceeeeeeC-CccHHHHHHHHHHHHcCCC
Confidence 55667777777766655543 4444433 6899999999988887544
No 484
>PRK06321 replicative DNA helicase; Provisional
Probab=28.25 E-value=4.9e+02 Score=32.49 Aligned_cols=47 Identities=17% Similarity=0.136 Sum_probs=34.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHH
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAE 470 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~ 470 (1231)
.|||.-+|+|||.-++.++..+.. ....++++++.-.--.|+...+-
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~-~~g~~v~~fSLEMs~~ql~~Rll 275 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCF-QNRLPVGIFSLEMTVDQLIHRII 275 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHH-hcCCeEEEEeccCCHHHHHHHHH
Confidence 488999999999988876655432 12468999998777777766543
No 485
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=28.20 E-value=1.5e+02 Score=38.28 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=37.4
Q ss_pred cccChhhhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHh
Q 044798 392 LKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 392 ~~iP~~i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~ 445 (1231)
+.+|..+.....-| .+++..+......+.+.++.-++|+|||..+-+++..+.
T Consensus 10 ~~~~~~~~~~viG~-~~a~~~l~~a~~~~~~~ll~G~pG~GKT~la~~la~~l~ 62 (608)
T TIGR00764 10 IPVPERLIDQVIGQ-EEAVEIIKKAAKQKRNVLLIGEPGVGKSMLAKAMAELLP 62 (608)
T ss_pred cCcchhhHhhccCH-HHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHcC
Confidence 45666665555443 355566655555677899999999999998888776653
No 486
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=28.10 E-value=1.9e+02 Score=37.39 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=19.0
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGA 443 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~ 443 (1231)
..|.+|.-+.|+|||..+-++...
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~ 208 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGE 208 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999887666543
No 487
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=28.06 E-value=1.4e+02 Score=32.75 Aligned_cols=47 Identities=28% Similarity=0.125 Sum_probs=32.0
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHH
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAE 470 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~ 470 (1231)
-.+++-+.|+|||.-+..++...... ..++++|+-.....+..+...
T Consensus 22 ~~~i~G~~G~GKT~l~~~~~~~~~~~--g~~~~~is~e~~~~~i~~~~~ 68 (229)
T TIGR03881 22 FVAVTGEPGTGKTIFCLHFAYKGLRD--GDPVIYVTTEESRESIIRQAA 68 (229)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhc--CCeEEEEEccCCHHHHHHHHH
Confidence 34678899999999988877654432 457888887555555444433
No 488
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=27.99 E-value=1.9e+02 Score=30.28 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=39.2
Q ss_pred eEEEEecc-------HHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhC
Q 044798 764 RVLLFAQT-------QQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN 810 (1231)
Q Consensus 764 KVLVFSQ~-------~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~ 810 (1231)
+|+||+.+ -..-..+..+|...++.|..+|=++....++++.+....
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~ 54 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGA 54 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCC
Confidence 57888776 567788999999999999999999998888887776543
No 489
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=27.47 E-value=3.9e+02 Score=28.43 Aligned_cols=73 Identities=18% Similarity=0.274 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc--CCcEE-EEeCCCCHHHHHHHHHHHhCCCCceEEEEec
Q 044798 748 MKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS--GYEYR-RMDGLTPVKQRMALIDEYNNSSDVFIFILTT 821 (1231)
Q Consensus 748 l~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~--Gi~~~-rIdGsts~~eRq~iId~Fn~d~~i~VfLlST 821 (1231)
...+..++......+.++-++-.....++.+...|+.. |+.++ ..+|-.+..+...+++..|.. +..++++..
T Consensus 34 ~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~-~pdiv~vgl 109 (172)
T PF03808_consen 34 SDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINAS-GPDIVFVGL 109 (172)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHc-CCCEEEEEC
Confidence 45667777777777889999999999999999999887 66665 566767788889999999874 445656543
No 490
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=27.32 E-value=1.2e+02 Score=37.34 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=34.5
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEK 471 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~k 471 (1231)
.|-+|.-+.|.|||+.+.|++... .-...-|.|.+|...|.-|..+
T Consensus 187 rglLLfGPpgtGKtmL~~aiAsE~-----~atff~iSassLtsK~~Ge~eK 232 (428)
T KOG0740|consen 187 RGLLLFGPPGTGKTMLAKAIATES-----GATFFNISASSLTSKYVGESEK 232 (428)
T ss_pred chhheecCCCCchHHHHHHHHhhh-----cceEeeccHHHhhhhccChHHH
Confidence 466789999999999888776543 2355667888888888766654
No 491
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=27.10 E-value=3.1e+02 Score=31.97 Aligned_cols=58 Identities=17% Similarity=0.340 Sum_probs=34.9
Q ss_pred ccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh----hh--cCCccEEEEeCCccc
Q 044798 512 YEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK----LL--DVEWGYAVLDEGHRI 569 (1231)
Q Consensus 512 ~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~----L~--~~~wd~VILDEAH~I 569 (1231)
|..+...+..-+|...+.++-..+.+-++|+.+.|....+. +. .-.+++||+|=--.|
T Consensus 64 y~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLNLF~tk~dqv~~~iek~~~~~~~~liDTPGQI 127 (366)
T KOG1532|consen 64 YPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLNLFATKFDQVIELIEKRAEEFDYVLIDTPGQI 127 (366)
T ss_pred CccCCchhhhhhHHHHHHHhCCCCCcchhhhHHHHHHHHHHHHHHHHHhhcccCEEEEcCCCce
Confidence 33334444444555566666666677788888877554432 11 235889999965554
No 492
>PF02186 TFIIE_beta: TFIIE beta subunit core domain; InterPro: IPR003166 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This entry represents the beta subunit of the transcription factor TFIIE.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005673 transcription factor TFIIE complex; PDB: 1D8K_A 1D8J_A.
Probab=26.91 E-value=1.4e+02 Score=27.02 Aligned_cols=59 Identities=17% Similarity=0.319 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHhcccCCCCChHHHHHHHHhhhccccCCCCCceeeccCCC
Q 044798 1168 LIRQICTFMQQRGGSSNSACIVEHFKDRVPSKDLPLFKNLLKEIATLQKDPSGSRWVLKLNFV 1230 (1231)
Q Consensus 1168 ~~~~~~~~~~~~~~~~~t~~~~~~f~~~~~~~~~~~f~~~l~~~~~~~~~~~~~~w~lk~~~~ 1230 (1231)
-+..+.+||..++.-.+-++|+++....+. ...+.+|+..=...=.+.++....||-|.
T Consensus 6 ql~~~VeymK~r~~Plt~~eI~d~l~~d~~----~~~~~~Lk~npKI~~d~~~~~f~fkp~yn 64 (65)
T PF02186_consen 6 QLAKAVEYMKKRDHPLTLEEILDYLSLDIG----KKLKQWLKNNPKIEYDPDGNTFSFKPKYN 64 (65)
T ss_dssp HHHHHHHHHHHH-S-B-HHHHHHHHTSSS-----HHHHHHHHH-TTEEEE-TT-CEEE--TTT
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHcCCCC----HHHHHHHHcCCCEEEecCCCEEEeccCCC
Confidence 467899999999999999999999984332 34667888555544444455777777663
No 493
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=26.80 E-value=4e+02 Score=31.02 Aligned_cols=24 Identities=25% Similarity=0.207 Sum_probs=20.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhh
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
-++.-+-|.|||..+.+++..+..
T Consensus 29 ~Lf~G~~G~Gk~~la~~~a~~l~c 52 (313)
T PRK05564 29 HIIVGEDGIGKSLLAKEIALKILG 52 (313)
T ss_pred EEeECCCCCCHHHHHHHHHHHHcC
Confidence 378999999999999988887753
No 494
>PHA00350 putative assembly protein
Probab=26.78 E-value=71 Score=38.88 Aligned_cols=15 Identities=27% Similarity=0.277 Sum_probs=12.3
Q ss_pred cEEEEeCCcccCCcc
Q 044798 559 GYAVLDEGHRIRNPN 573 (1231)
Q Consensus 559 d~VILDEAH~IKN~~ 573 (1231)
.+|||||||++-++.
T Consensus 83 aLIViDEaq~~~p~r 97 (399)
T PHA00350 83 ALYVIDEAQMIFPKR 97 (399)
T ss_pred CEEEEECchhhcCCC
Confidence 499999999996543
No 495
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=26.76 E-value=9.7e+02 Score=27.12 Aligned_cols=101 Identities=13% Similarity=0.119 Sum_probs=64.3
Q ss_pred eccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCC--ceEEEEeccccccccCCCCCCEEEEcCCCCCcc
Q 044798 769 AQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSD--VFIFILTTKVGGLGTNLTGANRVIIFDPDWNPS 846 (1231)
Q Consensus 769 SQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~--i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs 846 (1231)
-.|.+..+.|...+.. |+.++.+.++.+... -.|.+.+. ..+|+|-=...++||+|.+-....+.-.+=+..
T Consensus 94 ~s~~ei~~~l~~~~~~-~~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~D 167 (239)
T PF10593_consen 94 PSWEEIKPELPKAISD-GIEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYD 167 (239)
T ss_pred cCHHHHHHHHHHHHhc-CceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHH
Confidence 4466677777777776 899999997665433 34444322 578888999999999999877666665554555
Q ss_pred hHHHHHHhHH--hhCCcccEEEEEEEeCCCHHHHH
Q 044798 847 TDVQARERAW--RIGQKQDVTVYRLITRGTIEEKV 879 (1231)
Q Consensus 847 ~d~QAigRa~--RiGQkk~V~VYRLit~gTIEEkI 879 (1231)
+.+| +||-. |.|= .-+-||.+...+.+..
T Consensus 168 TL~Q-mgRwFGYR~gY---~dl~Ri~~~~~l~~~f 198 (239)
T PF10593_consen 168 TLMQ-MGRWFGYRPGY---EDLCRIYMPEELYDWF 198 (239)
T ss_pred HHHH-HhhcccCCccc---ccceEEecCHHHHHHH
Confidence 5555 46753 4442 3334444444444433
No 496
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=26.24 E-value=4.8e+02 Score=28.17 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEe
Q 044798 748 MKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS--GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILT 820 (1231)
Q Consensus 748 l~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~--Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlS 820 (1231)
...+..++......+.++-++.-....++.+...|+.. |+.++-.+|-.+..+.+.+++.-+.. ...++++.
T Consensus 34 ~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s-~~dil~Vg 107 (177)
T TIGR00696 34 PDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARS-GAGIVFVG 107 (177)
T ss_pred HHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHc-CCCEEEEE
Confidence 45667777777777889999999999999999999876 67766668888877777788877764 34555554
No 497
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=26.21 E-value=36 Score=36.73 Aligned_cols=34 Identities=18% Similarity=0.336 Sum_probs=22.0
Q ss_pred CccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccC
Q 044798 557 EWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAP 595 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTP 595 (1231)
..|++|+|||=.| .......-+....|+++|.|-
T Consensus 90 ~~DlliVDEAAaI-----p~p~L~~ll~~~~~vv~stTi 123 (177)
T PF05127_consen 90 QADLLIVDEAAAI-----PLPLLKQLLRRFPRVVFSTTI 123 (177)
T ss_dssp --SCEEECTGGGS------HHHHHHHHCCSSEEEEEEEB
T ss_pred CCCEEEEechhcC-----CHHHHHHHHhhCCEEEEEeec
Confidence 4699999999777 222222334677889998884
No 498
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=26.04 E-value=1.4e+02 Score=41.74 Aligned_cols=58 Identities=14% Similarity=0.055 Sum_probs=42.8
Q ss_pred chHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCC-CCcEEEEeCCcchHHH
Q 044798 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM-YKPSIVVCPVTLLRQW 465 (1231)
Q Consensus 402 L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~-~kpvLIV~P~sLl~QW 465 (1231)
+.+-|..+|. ..+.+.++...-|+|||.+.+.-+..+...+. ...+||||=+....++
T Consensus 2 ~t~~Q~~ai~------~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e 60 (1232)
T TIGR02785 2 WTDEQWQAIY------TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAARE 60 (1232)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHH
Confidence 4577888885 45677889999999999998887776655442 2568999886555543
No 499
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=25.90 E-value=2.9e+02 Score=36.12 Aligned_cols=129 Identities=23% Similarity=0.327 Sum_probs=0.0
Q ss_pred HcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHHcCCCeEEEEecccchhhhhhhhcc
Q 044798 417 HCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAK 496 (1231)
Q Consensus 417 ~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw~p~lrV~il~gs~~~~~~~~kr~~ 496 (1231)
.....|.+|.-..|+|||+-+-+++... ++++.-+.|.-
T Consensus 698 lr~~~giLLyGppGcGKT~la~a~a~~~------------------------------~~~fisvKGPE----------- 736 (952)
T KOG0735|consen 698 LRLRTGILLYGPPGCGKTLLASAIASNS------------------------------NLRFISVKGPE----------- 736 (952)
T ss_pred cccccceEEECCCCCcHHHHHHHHHhhC------------------------------CeeEEEecCHH-----------
Q ss_pred CCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcCCccEEEEeCCcccC-----C
Q 044798 497 SSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIR-----N 571 (1231)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~~wd~VILDEAH~IK-----N 571 (1231)
++.+ .+=.+-+.+|...+.-....+..+.+||.+.|- +
T Consensus 737 ------------------------------lL~K-------yIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhD 779 (952)
T KOG0735|consen 737 ------------------------------LLSK-------YIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHD 779 (952)
T ss_pred ------------------------------HHHH-------HhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCC
Q ss_pred cchHHHHHHHhc----------ccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCCCCCChhh
Q 044798 572 PNAEISLVCKQL----------QTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQ 641 (1231)
Q Consensus 572 ~~Sk~skalk~L----------~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~~as~~~ 641 (1231)
...-+-+.+.+| ...+.++.|--|
T Consensus 780 sTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRp---------------------------------------------- 813 (952)
T KOG0735|consen 780 STGVTDRVVNQLLTELDGAEGLDGVYILAATSRP---------------------------------------------- 813 (952)
T ss_pred CCCchHHHHHHHHHhhccccccceEEEEEecCCc----------------------------------------------
Q ss_pred HhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHH
Q 044798 642 VSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAV 691 (1231)
Q Consensus 642 v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~l 691 (1231)
++|.|-+|| |.+....++|++......+
T Consensus 814 ------------dliDpALLR----------pGRlD~~v~C~~P~~~eRl 841 (952)
T KOG0735|consen 814 ------------DLIDPALLR----------PGRLDKLVYCPLPDEPERL 841 (952)
T ss_pred ------------cccCHhhcC----------CCccceeeeCCCCCcHHHH
No 500
>CHL00095 clpC Clp protease ATP binding subunit
Probab=25.78 E-value=1.7e+02 Score=39.05 Aligned_cols=41 Identities=15% Similarity=0.041 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHcC----------CCc-EEEEeCCCchHHHHHHHHHHHHh
Q 044798 405 YQKVGVQWLWELHCQ----------RAG-GIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 405 yQkegV~wL~el~~~----------~~G-gILADEMGLGKTIqaIA~L~~L~ 445 (1231)
-|.++|.-+...... ..+ .++.-++|+|||..|-++...++
T Consensus 513 GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 513 GQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred ChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 477777666443221 123 47899999999998888776664
Done!