Query 044798
Match_columns 1231
No_of_seqs 537 out of 2532
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 11:48:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044798.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044798hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1z3i_X Similar to RAD54-like; 100.0 4.1E-81 1.4E-85 777.8 42.0 501 392-930 46-583 (644)
2 3mwy_W Chromo domain-containin 100.0 2.5E-75 8.7E-80 742.2 39.6 478 399-917 234-735 (800)
3 1z63_A Helicase of the SNF2/RA 100.0 7.6E-73 2.6E-77 681.0 36.9 460 395-917 31-498 (500)
4 3dmq_A RNA polymerase-associat 100.0 3E-51 1E-55 529.7 21.0 442 400-896 152-638 (968)
5 1wp9_A ATP-dependent RNA helic 100.0 1.7E-46 5.9E-51 441.4 25.4 428 401-891 9-493 (494)
6 1z5z_A Helicase of the SNF2/RA 100.0 6E-44 2.1E-48 399.5 24.2 251 660-918 13-270 (271)
7 2fwr_A DNA repair protein RAD2 100.0 2.4E-40 8.3E-45 395.4 20.6 353 400-890 92-471 (472)
8 4a2p_A RIG-I, retinoic acid in 100.0 2E-38 6.7E-43 383.7 30.9 432 400-895 6-529 (556)
9 4a2q_A RIG-I, retinoic acid in 100.0 5E-38 1.7E-42 399.8 32.3 440 392-895 237-770 (797)
10 3tbk_A RIG-I helicase domain; 100.0 6.4E-37 2.2E-41 369.6 38.0 431 401-895 4-528 (555)
11 4a2w_A RIG-I, retinoic acid in 100.0 1.6E-37 5.3E-42 401.0 30.4 442 392-895 237-770 (936)
12 2ykg_A Probable ATP-dependent 100.0 5.8E-34 2E-38 356.0 30.1 422 400-879 12-522 (696)
13 4gl2_A Interferon-induced heli 100.0 1.1E-33 3.9E-38 353.5 25.6 422 401-895 7-541 (699)
14 2oca_A DAR protein, ATP-depend 100.0 3.1E-33 1.1E-37 337.2 27.7 346 401-880 113-465 (510)
15 3h1t_A Type I site-specific re 100.0 1.2E-31 4E-36 329.9 23.5 350 400-870 177-558 (590)
16 1xti_A Probable ATP-dependent 100.0 3.3E-30 1.1E-34 298.0 34.1 322 391-866 12-352 (391)
17 1hv8_A Putative ATP-dependent 100.0 7.5E-31 2.6E-35 299.6 25.3 312 401-875 28-347 (367)
18 2j0s_A ATP-dependent RNA helic 100.0 6.8E-30 2.3E-34 298.3 31.5 329 389-874 39-384 (410)
19 3hgt_A HDA1 complex subunit 3; 100.0 1.5E-31 5.1E-36 302.4 16.2 205 672-883 20-247 (328)
20 1s2m_A Putative ATP-dependent 100.0 6.4E-30 2.2E-34 297.2 28.1 326 390-874 24-366 (400)
21 3eiq_A Eukaryotic initiation f 100.0 1.3E-29 4.4E-34 295.3 23.1 329 389-873 42-387 (414)
22 2db3_A ATP-dependent RNA helic 100.0 7.3E-29 2.5E-33 294.4 29.0 326 385-871 54-405 (434)
23 2z0m_A 337AA long hypothetical 100.0 1.5E-29 5E-34 286.0 21.1 310 401-882 16-333 (337)
24 3pey_A ATP-dependent RNA helic 100.0 1.5E-28 5.2E-33 283.4 26.9 321 389-866 7-351 (395)
25 1fuu_A Yeast initiation factor 100.0 1.1E-29 3.7E-34 293.6 15.6 327 389-873 23-366 (394)
26 2i4i_A ATP-dependent RNA helic 100.0 3.5E-28 1.2E-32 283.8 27.0 332 384-873 12-383 (417)
27 3fht_A ATP-dependent RNA helic 100.0 2.5E-27 8.5E-32 275.5 30.5 326 388-871 26-377 (412)
28 3oiy_A Reverse gyrase helicase 100.0 1.3E-26 4.5E-31 272.0 31.2 305 401-870 21-362 (414)
29 1oyw_A RECQ helicase, ATP-depe 99.9 1E-26 3.5E-31 282.7 24.4 304 401-866 25-338 (523)
30 3sqw_A ATP-dependent RNA helic 99.9 1.3E-25 4.6E-30 275.7 29.9 324 401-872 43-397 (579)
31 3i5x_A ATP-dependent RNA helic 99.9 3E-25 1E-29 270.8 30.1 326 400-873 93-449 (563)
32 2v1x_A ATP-dependent DNA helic 99.9 2.7E-25 9.2E-30 273.7 27.4 310 401-867 44-370 (591)
33 3fmp_B ATP-dependent RNA helic 99.9 8.8E-27 3E-31 279.0 13.1 323 388-866 93-441 (479)
34 2eyq_A TRCF, transcription-rep 99.9 7.3E-25 2.5E-29 287.5 27.4 308 401-872 603-921 (1151)
35 3fho_A ATP-dependent RNA helic 99.9 1.8E-25 6.3E-30 270.5 12.5 312 401-867 141-466 (508)
36 3l9o_A ATP-dependent RNA helic 99.9 1.1E-23 3.7E-28 275.2 28.5 362 400-874 183-598 (1108)
37 2xgj_A ATP-dependent RNA helic 99.9 1.4E-23 4.7E-28 272.0 28.5 341 401-873 86-499 (1010)
38 1gm5_A RECG; helicase, replica 99.9 1E-24 3.6E-29 275.0 13.1 307 401-866 368-692 (780)
39 2va8_A SSO2462, SKI2-type heli 99.9 1.6E-21 5.4E-26 245.2 30.8 326 401-874 30-409 (715)
40 2zj8_A DNA helicase, putative 99.9 7.2E-22 2.5E-26 248.6 27.5 320 401-877 23-391 (720)
41 2p6r_A Afuhel308 helicase; pro 99.9 5.3E-22 1.8E-26 249.1 26.2 321 400-876 24-391 (702)
42 4a4z_A Antiviral helicase SKI2 99.9 7.8E-21 2.7E-25 246.2 28.9 373 401-883 39-502 (997)
43 4ddu_A Reverse gyrase; topoiso 99.9 4.3E-21 1.5E-25 250.7 25.7 278 401-843 78-388 (1104)
44 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 1.2E-20 4E-25 244.0 27.6 347 401-870 271-706 (1038)
45 1gku_B Reverse gyrase, TOP-RG; 99.8 1.3E-19 4.6E-24 236.3 21.4 272 402-842 58-352 (1054)
46 1tf5_A Preprotein translocase 99.8 1.7E-18 5.7E-23 216.1 23.5 118 743-864 413-538 (844)
47 2jlq_A Serine protease subunit 99.8 1.5E-18 5.2E-23 207.1 13.0 95 761-862 187-301 (451)
48 2fsf_A Preprotein translocase 99.8 2E-17 6.8E-22 206.0 22.3 118 743-864 422-576 (853)
49 2v6i_A RNA helicase; membrane, 99.8 4.3E-18 1.5E-22 202.1 15.7 100 761-867 170-287 (431)
50 1nkt_A Preprotein translocase 99.7 2.7E-16 9.3E-21 196.1 28.4 118 743-864 441-610 (922)
51 1yks_A Genome polyprotein [con 99.7 6E-18 2E-22 201.5 12.9 93 761-860 176-287 (440)
52 1rif_A DAR protein, DNA helica 99.7 7.6E-18 2.6E-22 188.2 12.6 162 401-612 113-278 (282)
53 1t5i_A C_terminal domain of A 99.7 2.3E-17 7.9E-22 171.8 15.0 120 743-866 14-133 (172)
54 2hjv_A ATP-dependent RNA helic 99.7 2.4E-17 8.3E-22 169.8 14.4 125 743-873 18-142 (163)
55 2z83_A Helicase/nucleoside tri 99.7 1.9E-17 6.5E-22 198.2 15.0 105 761-873 189-313 (459)
56 2jgn_A DBX, DDX3, ATP-dependen 99.7 6.1E-18 2.1E-22 178.4 7.8 126 743-873 28-153 (185)
57 2xau_A PRE-mRNA-splicing facto 99.7 9.5E-17 3.3E-21 203.3 18.0 110 761-875 302-445 (773)
58 2wv9_A Flavivirin protease NS2 99.7 3E-17 1E-21 204.6 13.2 97 761-864 409-526 (673)
59 1fuk_A Eukaryotic initiation f 99.7 8.9E-17 3E-21 165.7 12.7 124 746-875 16-139 (165)
60 2whx_A Serine protease/ntpase/ 99.7 1.2E-16 4E-21 197.8 15.7 103 761-871 354-476 (618)
61 2p6n_A ATP-dependent RNA helic 99.7 6.7E-17 2.3E-21 171.4 11.5 124 743-873 38-161 (191)
62 3rc3_A ATP-dependent RNA helic 99.7 1E-16 3.4E-21 199.7 14.3 108 764-872 322-444 (677)
63 2fz4_A DNA repair protein RAD2 99.7 3.9E-16 1.3E-20 170.9 16.3 140 400-600 92-233 (237)
64 4f92_B U5 small nuclear ribonu 99.7 4.2E-15 1.4E-19 201.2 28.1 322 400-873 925-1308(1724)
65 3o8b_A HCV NS3 protease/helica 99.7 4.3E-17 1.5E-21 201.4 7.2 101 761-875 395-516 (666)
66 2rb4_A ATP-dependent RNA helic 99.7 3.9E-16 1.3E-20 162.4 12.4 124 745-874 19-148 (175)
67 3eaq_A Heat resistant RNA depe 99.6 1E-15 3.5E-20 164.7 14.3 125 743-873 14-138 (212)
68 1c4o_A DNA nucleotide excision 99.6 5E-14 1.7E-18 175.8 31.7 126 744-874 421-551 (664)
69 2yjt_D ATP-dependent RNA helic 99.4 2.5E-17 8.7E-22 170.7 0.0 118 745-866 15-132 (170)
70 4f92_B U5 small nuclear ribonu 99.6 5.8E-15 2E-19 199.8 22.6 326 399-875 77-475 (1724)
71 2gxq_A Heat resistant RNA depe 99.6 3.8E-15 1.3E-19 157.4 16.4 161 400-603 22-192 (207)
72 3jux_A Protein translocase sub 99.6 1.4E-14 4.8E-19 177.5 20.5 119 743-865 455-581 (822)
73 2pl3_A Probable ATP-dependent 99.6 6.6E-15 2.3E-19 159.5 14.4 165 389-596 27-213 (236)
74 3b6e_A Interferon-induced heli 99.6 3.3E-15 1.1E-19 158.3 11.7 130 401-572 33-177 (216)
75 1t6n_A Probable ATP-dependent 99.6 1.3E-14 4.5E-19 155.3 16.0 172 390-603 17-207 (220)
76 1qde_A EIF4A, translation init 99.6 2.8E-14 9.6E-19 153.0 17.1 166 388-596 15-197 (224)
77 2oxc_A Probable ATP-dependent 99.6 2.5E-14 8.5E-19 154.9 16.4 164 389-595 26-208 (230)
78 3ber_A Probable ATP-dependent 99.6 1.5E-14 5.1E-19 159.1 13.9 166 389-596 45-228 (249)
79 3i32_A Heat resistant RNA depe 99.6 1.3E-14 4.4E-19 164.5 13.1 125 743-873 11-135 (300)
80 2d7d_A Uvrabc system protein B 99.6 3.6E-13 1.2E-17 168.0 27.2 126 745-875 428-558 (661)
81 1q0u_A Bstdead; DEAD protein, 99.5 3.4E-14 1.2E-18 152.4 14.6 160 401-603 26-198 (219)
82 3bor_A Human initiation factor 99.5 5.8E-14 2E-18 152.8 16.3 168 388-596 31-215 (237)
83 1vec_A ATP-dependent RNA helic 99.5 7.4E-14 2.5E-18 147.6 15.5 154 401-596 25-188 (206)
84 1wrb_A DJVLGB; RNA helicase, D 99.5 1.2E-13 4E-18 151.4 17.5 161 400-603 44-226 (253)
85 3iuy_A Probable ATP-dependent 99.5 5.1E-13 1.8E-17 143.9 15.4 162 392-595 25-208 (228)
86 3fe2_A Probable ATP-dependent 99.4 1.2E-12 4E-17 142.8 16.0 168 386-595 28-217 (242)
87 3dkp_A Probable ATP-dependent 99.4 1.7E-12 5.7E-17 141.4 14.5 154 401-595 51-220 (245)
88 3ly5_A ATP-dependent RNA helic 99.4 2.8E-12 9.7E-17 142.0 13.2 154 401-596 76-243 (262)
89 3fmo_B ATP-dependent RNA helic 99.3 4.6E-12 1.6E-16 143.3 12.9 167 387-596 92-278 (300)
90 2ipc_A Preprotein translocase 99.2 3.4E-10 1.1E-14 141.4 23.9 146 401-608 79-240 (997)
91 2vl7_A XPD; helicase, unknown 99.1 5.5E-09 1.9E-13 127.5 25.4 91 750-846 371-466 (540)
92 3llm_A ATP-dependent RNA helic 98.7 5.1E-08 1.8E-12 105.8 9.9 150 401-598 61-221 (235)
93 3crv_A XPD/RAD3 related DNA he 98.5 2.2E-07 7.4E-12 113.6 10.4 163 401-571 3-187 (551)
94 4a15_A XPD helicase, ATP-depen 97.9 3.6E-05 1.2E-09 95.4 11.8 85 401-486 3-90 (620)
95 3lfu_A DNA helicase II; SF1 he 96.8 0.029 9.9E-07 69.2 19.4 82 397-484 5-93 (647)
96 4b3f_X DNA-binding protein smu 96.5 0.0071 2.4E-07 75.2 10.9 68 400-472 188-256 (646)
97 2gk6_A Regulator of nonsense t 96.5 0.012 4.1E-07 72.9 12.7 181 400-598 179-376 (624)
98 3upu_A ATP-dependent DNA helic 96.4 0.013 4.6E-07 69.6 11.9 65 399-464 23-88 (459)
99 1w36_D RECD, exodeoxyribonucle 96.3 0.0047 1.6E-07 76.4 7.9 65 403-471 151-218 (608)
100 3e1s_A Exodeoxyribonuclease V, 96.3 0.011 3.9E-07 72.4 10.9 62 401-468 189-250 (574)
101 2o0j_A Terminase, DNA packagin 96.2 0.029 9.8E-07 65.6 13.1 157 401-611 163-327 (385)
102 2xzl_A ATP-dependent helicase 96.0 0.03 1E-06 71.3 13.0 178 400-598 359-554 (802)
103 2wjy_A Regulator of nonsense t 95.7 0.034 1.2E-06 70.8 12.0 181 400-598 355-552 (800)
104 1bby_A RAP30; average structur 95.7 0.02 6.8E-07 50.5 6.6 60 1165-1230 6-66 (69)
105 3cpe_A Terminase, DNA packagin 95.2 0.048 1.6E-06 67.1 10.4 69 401-473 163-232 (592)
106 2orw_A Thymidine kinase; TMTK, 95.2 0.032 1.1E-06 58.2 7.5 35 423-459 6-40 (184)
107 2b8t_A Thymidine kinase; deoxy 94.2 0.2 6.9E-06 54.1 10.8 38 420-459 12-49 (223)
108 3vkw_A Replicase large subunit 93.2 0.096 3.3E-06 62.1 6.7 108 422-597 163-271 (446)
109 2j9r_A Thymidine kinase; TK1, 92.6 0.38 1.3E-05 51.7 9.6 35 424-460 32-66 (214)
110 1xx6_A Thymidine kinase; NESG, 92.6 0.39 1.3E-05 50.5 9.6 35 423-459 11-45 (191)
111 3syl_A Protein CBBX; photosynt 91.0 0.48 1.6E-05 52.4 8.7 27 422-448 69-95 (309)
112 2orv_A Thymidine kinase; TP4A 90.3 0.5 1.7E-05 51.3 7.6 34 424-459 23-56 (234)
113 3vfd_A Spastin; ATPase, microt 89.7 2.2 7.7E-05 49.1 13.2 39 420-463 148-186 (389)
114 4a15_A XPD helicase, ATP-depen 89.3 0.8 2.8E-05 56.6 9.4 80 758-843 444-527 (620)
115 1l8q_A Chromosomal replication 87.8 3.4 0.00012 46.1 12.6 40 420-461 37-76 (324)
116 4b4t_J 26S protease regulatory 87.8 2.9 9.8E-05 49.0 12.2 45 419-468 181-225 (405)
117 1a5t_A Delta prime, HOLB; zinc 87.2 2.4 8.2E-05 47.9 11.0 46 402-447 3-51 (334)
118 1nha_A TFIIF-alpha, transcript 86.9 0.38 1.3E-05 43.5 3.1 55 1170-1226 22-81 (82)
119 1w4r_A Thymidine kinase; type 86.4 1.5 5.1E-05 46.3 8.0 35 423-459 23-57 (195)
120 2p65_A Hypothetical protein PF 85.7 1.9 6.6E-05 42.9 8.2 26 420-445 43-68 (187)
121 2chg_A Replication factor C sm 85.1 5 0.00017 40.8 11.3 24 422-445 40-63 (226)
122 3u61_B DNA polymerase accessor 84.2 3.4 0.00012 46.0 10.1 50 557-606 105-156 (324)
123 2qby_B CDC6 homolog 3, cell di 83.9 2.2 7.4E-05 48.4 8.5 26 421-446 46-71 (384)
124 3eie_A Vacuolar protein sortin 83.5 1.8 6.1E-05 48.6 7.5 24 421-444 52-75 (322)
125 2z4s_A Chromosomal replication 83.3 6.3 0.00022 46.4 12.4 41 420-460 130-170 (440)
126 3e2i_A Thymidine kinase; Zn-bi 82.9 4.1 0.00014 43.8 9.5 35 424-460 32-66 (219)
127 1jbk_A CLPB protein; beta barr 82.7 7 0.00024 38.7 10.9 27 420-446 43-69 (195)
128 1i27_A Transcription factor II 82.4 0.39 1.3E-05 42.5 1.1 55 1170-1226 13-72 (73)
129 1iqp_A RFCS; clamp loader, ext 82.1 3.8 0.00013 45.1 9.4 24 422-445 48-71 (327)
130 3bos_A Putative DNA replicatio 81.5 2.6 9E-05 44.0 7.4 28 419-446 51-78 (242)
131 2qz4_A Paraplegin; AAA+, SPG7, 80.6 7.5 0.00026 41.4 10.9 25 420-444 39-63 (262)
132 2qp9_X Vacuolar protein sortin 80.5 1.9 6.6E-05 49.3 6.4 25 420-444 84-108 (355)
133 1xwi_A SKD1 protein; VPS4B, AA 80.5 2 6.7E-05 48.5 6.4 24 421-444 46-69 (322)
134 1gm5_A RECG; helicase, replica 80.2 6.6 0.00022 49.9 11.6 99 742-841 397-499 (780)
135 3h4m_A Proteasome-activating n 79.9 2.2 7.4E-05 46.5 6.3 25 419-443 50-74 (285)
136 1njg_A DNA polymerase III subu 78.4 8.2 0.00028 39.6 10.0 24 422-445 47-70 (250)
137 4b4t_H 26S protease regulatory 76.0 5.6 0.00019 47.4 8.6 42 419-465 242-283 (467)
138 2e5n_A RNA polymerase II elong 75.2 2.3 8E-05 40.0 4.0 61 1165-1229 11-72 (100)
139 3oiy_A Reverse gyrase helicase 74.9 11 0.00037 43.3 10.7 97 741-838 43-145 (414)
140 2v1u_A Cell division control p 74.2 3.6 0.00012 46.3 6.3 27 419-445 43-69 (387)
141 2zan_A Vacuolar protein sortin 73.9 3.7 0.00013 48.5 6.4 40 420-463 167-206 (444)
142 3t15_A Ribulose bisphosphate c 73.7 6 0.00021 43.8 7.8 24 421-444 37-60 (293)
143 3hjh_A Transcription-repair-co 72.1 12 0.0004 44.9 10.2 55 422-482 16-71 (483)
144 2bjv_A PSP operon transcriptio 70.9 12 0.0004 40.3 9.1 25 418-442 27-51 (265)
145 3k1j_A LON protease, ATP-depen 70.6 7.6 0.00026 47.6 8.4 75 392-467 33-119 (604)
146 1sxj_B Activator 1 37 kDa subu 70.4 8.6 0.00029 42.1 8.0 24 422-445 44-67 (323)
147 1fnn_A CDC6P, cell division co 69.8 30 0.001 38.8 12.6 24 422-445 46-69 (389)
148 1pjr_A PCRA; DNA repair, DNA r 68.9 7.3 0.00025 48.9 7.8 83 396-484 6-95 (724)
149 4b4t_I 26S protease regulatory 68.5 9 0.00031 45.2 7.9 42 420-466 216-257 (437)
150 1sxj_D Activator 1 41 kDa subu 68.1 6.6 0.00022 43.8 6.5 25 421-445 59-83 (353)
151 1uaa_A REP helicase, protein ( 67.8 8.2 0.00028 47.8 7.9 79 401-485 2-88 (673)
152 3d8b_A Fidgetin-like protein 1 67.3 13 0.00044 42.3 8.9 24 420-443 117-140 (357)
153 2doa_A RNA polymerase II elong 67.2 3.3 0.00011 39.3 3.2 60 1166-1229 11-71 (104)
154 1jr3_A DNA polymerase III subu 66.0 12 0.00042 41.9 8.3 24 422-445 40-63 (373)
155 3te6_A Regulatory protein SIR3 65.8 87 0.003 35.3 15.1 44 403-446 25-71 (318)
156 3cf0_A Transitional endoplasmi 65.8 7.9 0.00027 42.9 6.5 26 419-444 48-73 (301)
157 4b4t_L 26S protease subunit RP 65.6 5.7 0.00019 47.0 5.5 41 420-465 215-255 (437)
158 1g5t_A COB(I)alamin adenosyltr 65.3 63 0.0021 34.0 12.9 63 545-610 108-174 (196)
159 1ojl_A Transcriptional regulat 64.0 16 0.00054 40.7 8.6 38 418-457 23-60 (304)
160 3dm5_A SRP54, signal recogniti 60.6 29 0.00098 41.1 10.2 33 424-458 104-136 (443)
161 1d2n_A N-ethylmaleimide-sensit 59.9 15 0.00053 39.6 7.4 23 421-443 65-87 (272)
162 2ce7_A Cell division protein F 59.8 40 0.0014 40.2 11.5 24 420-443 49-72 (476)
163 1qvr_A CLPB protein; coiled co 58.8 22 0.00074 45.5 9.5 27 420-446 191-217 (854)
164 2qby_A CDC6 homolog 1, cell di 58.3 14 0.00048 41.3 6.9 27 420-446 45-71 (386)
165 2q6t_A DNAB replication FORK h 58.2 35 0.0012 40.0 10.5 50 420-470 200-249 (444)
166 2gno_A DNA polymerase III, gam 58.2 33 0.0011 38.3 9.9 37 406-442 2-40 (305)
167 2eyq_A TRCF, transcription-rep 57.9 34 0.0011 45.4 11.3 96 742-838 632-731 (1151)
168 4ddu_A Reverse gyrase; topoiso 57.8 24 0.0008 46.6 9.8 96 742-838 101-202 (1104)
169 2w58_A DNAI, primosome compone 57.8 18 0.00061 37.0 7.1 35 421-457 55-89 (202)
170 1sxj_C Activator 1 40 kDa subu 57.5 27 0.00091 39.1 9.0 23 423-445 49-71 (340)
171 2chq_A Replication factor C sm 56.2 7.6 0.00026 42.5 4.1 24 422-445 40-63 (319)
172 3hu3_A Transitional endoplasmi 56.2 14 0.00047 44.3 6.7 24 419-442 237-260 (489)
173 4b4t_K 26S protease regulatory 54.9 8.3 0.00028 45.5 4.3 42 419-465 205-246 (428)
174 1r6b_X CLPA protein; AAA+, N-t 54.7 43 0.0015 41.9 11.2 27 419-445 206-232 (758)
175 3kl4_A SRP54, signal recogniti 53.6 64 0.0022 38.0 11.7 32 424-457 101-132 (433)
176 2r6a_A DNAB helicase, replicat 53.2 36 0.0012 40.0 9.6 50 419-469 202-251 (454)
177 3cf2_A TER ATPase, transitiona 52.6 9.8 0.00034 48.4 4.8 41 420-465 511-551 (806)
178 3pvs_A Replication-associated 52.6 28 0.00094 41.1 8.4 23 421-443 51-73 (447)
179 3b9p_A CG5977-PA, isoform A; A 52.4 9.7 0.00033 41.6 4.2 24 420-443 54-77 (297)
180 3ec2_A DNA replication protein 50.8 27 0.00091 35.1 6.9 64 404-468 17-85 (180)
181 3crv_A XPD/RAD3 related DNA he 48.9 76 0.0026 38.2 11.7 77 759-844 390-474 (551)
182 3sxu_A DNA polymerase III subu 48.5 79 0.0027 31.7 9.8 41 745-785 22-62 (150)
183 1sxj_E Activator 1 40 kDa subu 48.4 74 0.0025 35.3 10.8 50 556-606 133-184 (354)
184 2px0_A Flagellar biosynthesis 47.8 79 0.0027 35.0 10.7 34 424-458 109-142 (296)
185 1sxj_A Activator 1 95 kDa subu 47.5 66 0.0023 38.4 10.8 24 421-444 78-101 (516)
186 1wp9_A ATP-dependent RNA helic 46.3 72 0.0025 36.2 10.5 91 742-838 31-131 (494)
187 1nlf_A Regulatory protein REPA 43.7 1.6E+02 0.0054 31.7 12.3 52 419-471 29-89 (279)
188 1w5s_A Origin recognition comp 43.2 61 0.0021 36.6 9.2 24 422-445 52-77 (412)
189 1zu4_A FTSY; GTPase, signal re 41.7 73 0.0025 35.8 9.3 32 425-458 110-141 (320)
190 3fe2_A Probable ATP-dependent 41.7 1.5E+02 0.0051 31.0 11.4 92 742-838 74-182 (242)
191 3ipz_A Monothiol glutaredoxin- 41.4 76 0.0026 29.5 8.0 56 753-809 9-70 (109)
192 3ber_A Probable ATP-dependent 40.3 1.7E+02 0.0057 31.0 11.6 92 742-838 88-192 (249)
193 3zyw_A Glutaredoxin-3; metal b 39.6 87 0.003 29.4 8.1 47 762-808 15-67 (111)
194 1gku_B Reverse gyrase, TOP-RG; 39.6 59 0.002 42.6 9.2 95 741-838 78-181 (1054)
195 1t6n_A Probable ATP-dependent 39.6 1.6E+02 0.0055 30.0 11.0 93 742-838 59-164 (220)
196 2oxc_A Probable ATP-dependent 38.7 1E+02 0.0035 32.0 9.4 91 742-838 69-172 (230)
197 3u4q_A ATP-dependent helicase/ 38.3 38 0.0013 45.1 7.3 58 398-461 7-68 (1232)
198 3nhm_A Response regulator; pro 38.2 1.3E+02 0.0043 27.6 9.1 95 760-860 25-124 (133)
199 2qgz_A Helicase loader, putati 37.1 47 0.0016 36.9 6.8 36 420-457 152-188 (308)
200 2fna_A Conserved hypothetical 36.9 2.2E+02 0.0077 30.8 12.3 24 421-444 31-54 (357)
201 2zr9_A Protein RECA, recombina 36.3 47 0.0016 37.8 6.7 43 421-465 62-104 (349)
202 3ly5_A ATP-dependent RNA helic 36.3 2.2E+02 0.0074 30.4 11.7 92 742-838 99-207 (262)
203 3gx8_A Monothiol glutaredoxin- 35.6 1.2E+02 0.0043 28.8 8.6 57 762-818 15-80 (121)
204 2pl3_A Probable ATP-dependent 34.9 1.7E+02 0.006 30.2 10.5 91 742-838 70-177 (236)
205 3g5j_A Putative ATP/GTP bindin 34.7 43 0.0015 31.6 5.2 49 749-798 76-126 (134)
206 4b4t_M 26S protease regulatory 34.4 17 0.00059 42.9 2.7 47 420-471 215-261 (434)
207 2l82_A Designed protein OR32; 34.3 1.4E+02 0.0049 28.2 8.3 48 764-811 4-51 (162)
208 3i42_A Response regulator rece 32.5 68 0.0023 29.3 6.1 94 762-861 27-125 (127)
209 3io5_A Recombination and repai 31.6 1.2E+02 0.0042 34.4 8.9 42 423-464 31-72 (333)
210 1xti_A Probable ATP-dependent 31.5 2.1E+02 0.0073 31.6 11.2 93 742-838 53-158 (391)
211 4b1v_M Phosphatase and actin r 31.0 17 0.00058 26.6 1.1 15 217-231 14-28 (32)
212 2zpa_A Uncharacterized protein 31.0 69 0.0024 39.8 7.3 52 401-459 175-226 (671)
213 1oyw_A RECQ helicase, ATP-depe 30.9 1.2E+02 0.0041 36.2 9.3 79 742-824 48-126 (523)
214 2wem_A Glutaredoxin-related pr 30.9 1.2E+02 0.0042 28.8 7.7 46 763-808 20-72 (118)
215 3iuy_A Probable ATP-dependent 30.3 1.2E+02 0.0042 31.2 8.3 92 742-838 65-173 (228)
216 3bh0_A DNAB-like replicative h 29.4 69 0.0024 35.6 6.5 50 420-471 68-117 (315)
217 2yan_A Glutaredoxin-3; oxidore 29.3 1.5E+02 0.0053 26.8 7.9 56 754-810 9-70 (105)
218 3n70_A Transport activator; si 29.0 60 0.0021 31.4 5.2 24 418-441 22-45 (145)
219 3cg4_A Response regulator rece 28.9 2.5E+02 0.0086 25.8 9.6 24 764-787 9-32 (142)
220 1ls1_A Signal recognition part 28.8 1.7E+02 0.0058 32.2 9.5 32 425-458 103-134 (295)
221 3co5_A Putative two-component 27.2 46 0.0016 32.3 4.0 49 418-472 25-73 (143)
222 2gxq_A Heat resistant RNA depe 27.1 2.4E+02 0.0081 28.2 9.6 92 742-838 46-150 (207)
223 1byi_A Dethiobiotin synthase; 26.9 59 0.002 33.5 5.1 34 423-458 5-38 (224)
224 2lnd_A De novo designed protei 26.9 3.4E+02 0.012 24.3 8.9 60 749-809 38-99 (112)
225 2wul_A Glutaredoxin related pr 26.6 2E+02 0.0067 27.6 8.2 63 763-825 20-89 (118)
226 3uk6_A RUVB-like 2; hexameric 26.4 69 0.0024 35.7 5.9 53 403-458 49-105 (368)
227 2wci_A Glutaredoxin-4; redox-a 26.4 1.5E+02 0.0051 29.0 7.5 48 763-810 35-88 (135)
228 3tbk_A RIG-I helicase domain; 26.3 85 0.0029 36.8 6.9 92 742-838 27-133 (555)
229 4a2p_A RIG-I, retinoic acid in 26.1 1.1E+02 0.0039 35.8 8.0 92 742-838 30-136 (556)
230 2zts_A Putative uncharacterize 25.9 81 0.0028 32.7 5.9 49 422-471 32-80 (251)
231 4b3f_X DNA-binding protein smu 25.6 95 0.0032 38.1 7.3 53 742-794 213-265 (646)
232 1ofh_A ATP-dependent HSL prote 25.5 69 0.0023 34.6 5.4 25 420-444 50-74 (310)
233 1u6t_A SH3 domain-binding glut 25.2 81 0.0028 30.6 5.2 37 773-809 17-53 (121)
234 1qde_A EIF4A, translation init 25.1 1.2E+02 0.004 31.1 6.9 91 742-838 59-161 (224)
235 2dr3_A UPF0273 protein PH0284; 24.6 1.2E+02 0.0042 31.3 7.0 48 421-470 24-71 (247)
236 2c9o_A RUVB-like 1; hexameric 24.6 36 0.0012 39.9 3.2 45 420-467 63-107 (456)
237 2ffh_A Protein (FFH); SRP54, s 24.4 1.3E+02 0.0046 35.1 7.9 86 423-564 101-187 (425)
238 3cf2_A TER ATPase, transitiona 24.3 42 0.0014 42.7 3.8 23 420-442 238-260 (806)
239 3eqz_A Response regulator; str 24.2 1.6E+02 0.0056 26.7 7.2 75 787-861 47-128 (135)
240 2dhr_A FTSH; AAA+ protein, hex 24.2 1.2E+02 0.004 36.4 7.5 24 420-443 64-87 (499)
241 3h5i_A Response regulator/sens 23.8 3.3E+02 0.011 25.1 9.4 26 764-789 7-32 (140)
242 3u4q_B ATP-dependent helicase/ 23.7 80 0.0027 41.7 6.5 50 425-474 6-56 (1166)
243 4a2q_A RIG-I, retinoic acid in 23.6 1.5E+02 0.0051 37.3 8.7 93 741-838 270-377 (797)
244 3fkq_A NTRC-like two-domain pr 23.4 5.2E+02 0.018 29.0 12.5 33 423-457 147-179 (373)
245 2r44_A Uncharacterized protein 23.3 54 0.0018 36.3 4.1 27 418-444 44-70 (331)
246 3hws_A ATP-dependent CLP prote 23.1 1E+02 0.0035 34.7 6.4 25 420-444 51-75 (363)
247 3cmu_A Protein RECA, recombina 23.1 1.3E+02 0.0046 42.0 8.5 50 419-472 1426-1475(2050)
248 3lte_A Response regulator; str 22.7 1.3E+02 0.0044 27.5 6.1 29 762-790 6-34 (132)
249 3kjh_A CO dehydrogenase/acetyl 22.0 52 0.0018 34.3 3.5 29 426-456 6-34 (254)
250 3gk5_A Uncharacterized rhodane 21.8 50 0.0017 30.6 2.9 38 760-797 53-90 (108)
251 2r2a_A Uncharacterized protein 21.8 31 0.0011 36.1 1.6 41 557-597 87-134 (199)
252 2j48_A Two-component sensor ki 21.6 1.4E+02 0.0049 26.1 6.0 88 761-856 24-116 (119)
253 3hr8_A Protein RECA; alpha and 21.6 2.7E+02 0.0092 31.7 9.5 40 423-464 64-103 (356)
254 3b6e_A Interferon-induced heli 21.5 97 0.0033 31.2 5.4 78 742-824 56-143 (216)
255 1wik_A Thioredoxin-like protei 21.4 1.5E+02 0.005 27.3 6.1 48 762-809 14-67 (109)
256 4a1f_A DNAB helicase, replicat 21.1 1.3E+02 0.0045 34.0 6.8 48 420-469 46-93 (338)
257 3bgw_A DNAB-like replicative h 21.0 1.1E+02 0.0036 36.0 6.2 50 419-470 196-245 (444)
258 1wrb_A DJVLGB; RNA helicase, D 20.5 4.8E+02 0.017 27.0 10.8 92 742-838 68-180 (253)
259 2v1x_A ATP-dependent DNA helic 20.5 2.2E+02 0.0075 34.6 9.0 79 742-823 67-146 (591)
No 1
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.1e-81 Score=777.81 Aligned_cols=501 Identities=34% Similarity=0.577 Sum_probs=433.3
Q ss_pred cccChhhhhhchHHHHHHHHHHHHHH-----cCCCcEEEEeCCCchHHHHHHHHHHHHhhcC-----CCCcEEEEeCCcc
Q 044798 392 LKIPESIFNNLFDYQKVGVQWLWELH-----CQRAGGIIGDEMGLGKTIQVLSFLGALHFSN-----MYKPSIVVCPVTL 461 (1231)
Q Consensus 392 ~~iP~~i~~~L~pyQkegV~wL~el~-----~~~~GgILADEMGLGKTIqaIA~L~~L~~s~-----~~kpvLIV~P~sL 461 (1231)
+.+|+.+...|+|||++||.||+.+. ..+.||||||+||+|||+|+|+++..+...+ ..+++|||||.++
T Consensus 46 ~~~~p~l~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~sl 125 (644)
T 1z3i_X 46 VVVDPVLSKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSSL 125 (644)
T ss_dssp EECCHHHHTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHHH
T ss_pred EeeChhhhhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecHHH
Confidence 34678899999999999999999876 3567899999999999999999999887654 2467999999999
Q ss_pred hHHHHHHHHHHcCC-CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhh-----cCC
Q 044798 462 LRQWKREAEKWYPS-FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVL-----RSE 535 (1231)
Q Consensus 462 l~QW~~E~~kw~p~-lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~-----~~~ 535 (1231)
+.||.+||.+|+|. +.++.++++....... .+.... ...
T Consensus 126 l~qW~~E~~~~~~~~~~~~~~~~g~~~~~~~-----------------------------------~~~~~~~~~~~~~~ 170 (644)
T 1z3i_X 126 VRNWYNEVGKWLGGRVQPVAIDGGSKDEIDS-----------------------------------KLVNFISQQGMRIP 170 (644)
T ss_dssp HHHHHHHHHHHHGGGCCEEEECSSCHHHHHH-----------------------------------HHHHHHCCCSSCCS
T ss_pred HHHHHHHHHHHcCCCeeEEEEeCCCHHHHHH-----------------------------------HHHHHHHhcCCCCC
Confidence 99999999999975 5566665433211000 011111 124
Q ss_pred CCEEEeCHHHHHHHHhhhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCC
Q 044798 536 SGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKL 615 (1231)
Q Consensus 536 ~~VvItTYe~Lr~~~~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~l 615 (1231)
++|+|+||++++.....+....|++|||||||+|||+.++.++++..+.+.+||+|||||+||++.|||+|++|+.|+.+
T Consensus 171 ~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l 250 (644)
T 1z3i_X 171 TPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGIL 250 (644)
T ss_dssp CCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHH
T ss_pred CcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcC
Confidence 68999999999999888988999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHH
Q 044798 616 GVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAF 695 (1231)
Q Consensus 616 g~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~ 695 (1231)
++...|...|..||..+...+++......+..+...|+.++.||++||++.++..+||++.+++++|+|++.|+.+|+.+
T Consensus 251 ~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~ 330 (644)
T 1z3i_X 251 GTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLF 330 (644)
T ss_dssp CCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHH
T ss_pred CCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHH
Confidence 99999999999999999999999888888999999999999999999999999999999999999999999999999998
Q ss_pred HhhHHHHHHhh---cCcchhHHHHHHHHHhCChhhhhhhhhcCC----------C-----CCCCCCcchHHHHHHHHHHH
Q 044798 696 LASSEVEQILD---GSRNSLYGIDVMRKICNHPDLLEREQSCQI----------P-----DYGNPERSEKMKVVAQVLKV 757 (1231)
Q Consensus 696 l~s~~~~~il~---~~~~~l~~i~~LRkicnHPdLl~~~~~~~~----------~-----d~~~~~~S~Kl~~L~eLLk~ 757 (1231)
+........+. .....+..+..||++||||.++........ + ....+..|+|+.+|..+|..
T Consensus 331 ~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~ 410 (644)
T 1z3i_X 331 LKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAM 410 (644)
T ss_dssp HHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHH
Confidence 76542211111 123457778999999999999864321111 0 11223569999999999999
Q ss_pred HHh-cCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCC-ceEEEEeccccccccCCCCCCE
Q 044798 758 WKD-QGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSD-VFIFILTTKVGGLGTNLTGANR 835 (1231)
Q Consensus 758 ~~~-~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~-i~VfLlSTkvGg~GLNLt~Anr 835 (1231)
+.. .++|+||||+|+.++++|+.+|...|+.|++++|+++..+|+.++++|++++. .+|||+||++||+||||++|++
T Consensus 411 ~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~ 490 (644)
T 1z3i_X 411 TRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANR 490 (644)
T ss_dssp HHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEE
T ss_pred HhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCE
Confidence 875 58999999999999999999999999999999999999999999999999754 4699999999999999999999
Q ss_pred EEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCcc-hhcccCHhHHHHhhcc
Q 044798 836 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFFKARNMKDLFTL 914 (1231)
Q Consensus 836 VIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~d~~-~~r~f~~~dl~dLF~l 914 (1231)
||+|||||||+.+.||+||+||+||+++|+||+|++.||+||+||++|..|+.|++.++++.. ..+.|+.++|.+||++
T Consensus 491 Vi~~d~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K~~l~~~v~~~~~~~~~~~~~~~l~~Lf~~ 570 (644)
T 1z3i_X 491 LVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHKKALSSCVVDEEQDVERHFSLGELRELFSL 570 (644)
T ss_dssp EEECSCCSSHHHHHHHHTTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHHHHTSCCCCSCSSSCCCSSCHHHHHHHTCC
T ss_pred EEEECCCCCccHHHHHHHhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHHHHHHHHHhcCcchhhcCCCHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999998754 4688999999999999
Q ss_pred CCCCCCCCcchhhHhh
Q 044798 915 NDDGNGGSTETSNIFS 930 (1231)
Q Consensus 915 ~~~~~~~~~et~~~f~ 930 (1231)
.++ ...+|++.+.
T Consensus 571 ~~~---~~~~t~~~~~ 583 (644)
T 1z3i_X 571 NEK---TLSDTHDRFR 583 (644)
T ss_dssp CSS---CSCHHHHHHT
T ss_pred CCC---ccchhhhhhh
Confidence 875 3567777654
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-75 Score=742.16 Aligned_cols=478 Identities=33% Similarity=0.565 Sum_probs=389.6
Q ss_pred hhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhh-cCCCCcEEEEeCCcchHHHHHHHHHHcCCCe
Q 044798 399 FNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF-SNMYKPSIVVCPVTLLRQWKREAEKWYPSFH 477 (1231)
Q Consensus 399 ~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~-s~~~kpvLIV~P~sLl~QW~~E~~kw~p~lr 477 (1231)
...|+|||++||+||+.++..+.||||||+||||||+|+|+++..+.. ....+|+|||||.+++.||.+||.+|+|.++
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPLSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCTTTHHHHHHHHHHHSTTCC
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECchHHHHHHHHHHHHCCCce
Confidence 357999999999999999999999999999999999999999988754 4557899999999999999999999999999
Q ss_pred EEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcCC
Q 044798 478 VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVE 557 (1231)
Q Consensus 478 V~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~~ 557 (1231)
+.+++|............. +. ... ........++|+||||+++......|....
T Consensus 314 v~~~~g~~~~r~~~~~~~~---------------~~-~~~----------~~~~~~~~~dvvitTy~~l~~~~~~l~~~~ 367 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEF---------------YT-NPR----------AKGKKTMKFNVLLTTYEYILKDRAELGSIK 367 (800)
T ss_dssp EEECCCSSHHHHHHHHHHS---------------CS-CC---------------CCCCCSEEEECTTHHHHTHHHHHTSE
T ss_pred EEEEeCCHHHHHHHHHHHh---------------hc-ccc----------ccccccccCCEEEecHHHHHhhHHHHhcCC
Confidence 9999987654332221100 00 000 000112456899999999999999999999
Q ss_pred ccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCCCCC
Q 044798 558 WGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANA 637 (1231)
Q Consensus 558 wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~~a 637 (1231)
|++|||||||++||+.++.++++..+.+.+||+|||||++|++.|||+|++||.|+.++....|.....
T Consensus 368 w~~vIvDEaH~lkn~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~----------- 436 (800)
T 3mwy_W 368 WQFMAVDEAHRLKNAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQ----------- 436 (800)
T ss_dssp EEEEEETTGGGGCCSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CC-----------
T ss_pred cceeehhhhhhhcCchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhccccc-----------
Confidence 999999999999999999999999999999999999999999999999999999999986665532111
Q ss_pred ChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHH--H-HHHhhcCcchhHH
Q 044798 638 SPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSE--V-EQILDGSRNSLYG 714 (1231)
Q Consensus 638 s~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~--~-~~il~~~~~~l~~ 714 (1231)
..........|+.++.|+++||++.++...||++.+.+++|.|++.|+.+|+.++.... + .....+....+..
T Consensus 437 ----~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~ 512 (800)
T 3mwy_W 437 ----DEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNI 512 (800)
T ss_dssp ----TTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHH
T ss_pred ----chhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHH
Confidence 11233456789999999999999999999999999999999999999999999876421 1 1111233456777
Q ss_pred HHHHHHHhCChhhhhhhhhcCCCCCCC------------CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHH
Q 044798 715 IDVMRKICNHPDLLEREQSCQIPDYGN------------PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFL 782 (1231)
Q Consensus 715 i~~LRkicnHPdLl~~~~~~~~~d~~~------------~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L 782 (1231)
+..||++|+||.++..........++. ...|+|+.+|.++|..+...|+|+|||||++.++++|+.+|
T Consensus 513 l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L 592 (800)
T 3mwy_W 513 MNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYL 592 (800)
T ss_dssp HHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHH
Confidence 889999999999986443322221111 13589999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEeCCCCHHHHHHHHHHHhCC-CCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCc
Q 044798 783 IASGYEYRRMDGLTPVKQRMALIDEYNNS-SDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQK 861 (1231)
Q Consensus 783 ~~~Gi~~~rIdGsts~~eRq~iId~Fn~d-~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQk 861 (1231)
...|++|++|+|+|+..+|+.+++.|+++ ...+|||+||++||+||||++|++||+|||+|||..+.||+||+||+||+
T Consensus 593 ~~~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~RiGQ~ 672 (800)
T 3mwy_W 593 SIKGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHRIGQK 672 (800)
T ss_dssp HHHTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSCSSCC
T ss_pred HhCCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHhcCCC
Confidence 99999999999999999999999999984 35679999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcCcch-------hcccCHhHHHHhhccCCC
Q 044798 862 QDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQ-------RRFFKARNMKDLFTLNDD 917 (1231)
Q Consensus 862 k~V~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~d~~~-------~r~f~~~dl~dLF~l~~~ 917 (1231)
++|+||||++.||+||+||+++..|..|.+.+++.... ...++..+|.+|+.++..
T Consensus 673 k~V~Vyrlv~~~TiEe~i~~~~~~K~~l~~~vi~~~~~~~~~~~~~~~~~~~el~~ll~~g~~ 735 (800)
T 3mwy_W 673 NHVMVYRLVSKDTVEEEVLERARKKMILEYAIISLGVTDGNKYTKKNEPNAGELSAILKFGAG 735 (800)
T ss_dssp SCEEEEEEEETTSHHHHHHHHHHHHTTSCC----------------CCCCHHHHHHHHSSCSS
T ss_pred ceEEEEEEecCCCHHHHHHHHHHHHHHHHHHHHccCcccccccccccCCCHHHHHHHHHcchH
Confidence 99999999999999999999999999999988864221 124577788888876653
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=7.6e-73 Score=681.05 Aligned_cols=460 Identities=33% Similarity=0.562 Sum_probs=401.5
Q ss_pred ChhhhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHHcC
Q 044798 395 PESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYP 474 (1231)
Q Consensus 395 P~~i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw~p 474 (1231)
|..+...|+|||.+||.||+.....+.||||||+||+|||+++++++..+...+..+++|||||.+++.||.+||.+|+|
T Consensus 31 p~~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~~l~~qw~~e~~~~~~ 110 (500)
T 1z63_A 31 PYNIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSVLKNWEEELSKFAP 110 (500)
T ss_dssp CCSCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTTHHHHHHHHHHHCT
T ss_pred ChhhhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccHHHHHHHHHHHHHHCC
Confidence 66677889999999999999888888999999999999999999999998877778899999999999999999999999
Q ss_pred CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhh
Q 044798 475 SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLL 554 (1231)
Q Consensus 475 ~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~ 554 (1231)
.+++.++++.... .....++|+|+||+++..... +.
T Consensus 111 ~~~v~~~~g~~~~-------------------------------------------~~~~~~~ivi~t~~~l~~~~~-l~ 146 (500)
T 1z63_A 111 HLRFAVFHEDRSK-------------------------------------------IKLEDYDIILTTYAVLLRDTR-LK 146 (500)
T ss_dssp TSCEEECSSSTTS-------------------------------------------CCGGGSSEEEEEHHHHTTCHH-HH
T ss_pred CceEEEEecCchh-------------------------------------------ccccCCcEEEeeHHHHhccch-hc
Confidence 9999988764310 001235899999999977655 67
Q ss_pred cCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCC
Q 044798 555 DVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGY 634 (1231)
Q Consensus 555 ~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~ 634 (1231)
...|++||+||||+++|+.++.++++..+.+.+||+|||||++|++.|||++++|+.|+.+++...|...|..|+..+.
T Consensus 147 ~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~- 225 (500)
T 1z63_A 147 EVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGD- 225 (500)
T ss_dssp TCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTC-
T ss_pred CCCcCEEEEeCccccCCHhHHHHHHHHhhccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhcccccccc-
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999887642
Q ss_pred CCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHH--HhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHH----HhhcC
Q 044798 635 ANASPLQVSTAYRCAVVLRDLIMPYLLRRMKAD--VNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQ----ILDGS 708 (1231)
Q Consensus 635 ~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~d--V~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~----il~~~ 708 (1231)
......|+.++.|+++||++.+ +..+||++.+.+++|.|++.|+.+|+.+........ .....
T Consensus 226 -----------~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 294 (500)
T 1z63_A 226 -----------NMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRK 294 (500)
T ss_dssp -----------HHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHH
T ss_pred -----------HHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccch
Confidence 2345678999999999999976 667899999999999999999999998765321000 00111
Q ss_pred cchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc-CC
Q 044798 709 RNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS-GY 787 (1231)
Q Consensus 709 ~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~-Gi 787 (1231)
...+..+..|+++|+||.++... ......++|+..+.++|..+...++|+||||+++.+++.|...|... |+
T Consensus 295 ~~~~~~l~~lr~~~~~p~l~~~~-------~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~ 367 (500)
T 1z63_A 295 GMILSTLLKLKQIVDHPALLKGG-------EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNT 367 (500)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHCS-------CCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCHHHhcCc-------cchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCC
Confidence 23456678899999999988632 12345789999999999999999999999999999999999999986 99
Q ss_pred cEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEE
Q 044798 788 EYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVY 867 (1231)
Q Consensus 788 ~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VY 867 (1231)
.+..++|+++..+|+.+++.|++++++.|+|++|+++|+||||++|++||+|||+|||..+.||+||++|+||+++|+||
T Consensus 368 ~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~Gq~~~v~v~ 447 (500)
T 1z63_A 368 EVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVH 447 (500)
T ss_dssp CCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTTTTTSCEEEE
T ss_pred CeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHcCCCCeeEEE
Confidence 99999999999999999999999877888999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHHHHhcCcc-hhcccCHhHHHHhhccCCC
Q 044798 868 RLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFFKARNMKDLFTLNDD 917 (1231)
Q Consensus 868 RLit~gTIEEkIy~rQ~~K~~L~n~vl~d~~-~~r~f~~~dl~dLF~l~~~ 917 (1231)
+|++.||+||+||.++..|..+++.++++.. ....++.+||.+||.+...
T Consensus 448 ~lv~~~tiee~i~~~~~~K~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 498 (500)
T 1z63_A 448 KLISVGTLEEKIDQLLAFKRSLFKDIISSGDSWITELSTEELRKVIELSVG 498 (500)
T ss_dssp EEEETTSHHHHTHHHHTTCSSSSSSGGGSTTGGGGSSCHHHHHHHHSCCC-
T ss_pred EEEeCCCHHHHHHHHHHHHHHHHHHHhhcCcchhccCCHHHHHHHhccCCC
Confidence 9999999999999999999999999998654 4567899999999998764
No 4
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3e-51 Score=529.65 Aligned_cols=442 Identities=18% Similarity=0.181 Sum_probs=334.2
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHHcCCCeEE
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVE 479 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw~p~lrV~ 479 (1231)
..|+|||.+++.|++. ..+.+|||||+||+|||+++++++..+...+..+++|||||.+|+.||..||.+|+ ++.+.
T Consensus 152 ~~LrpyQ~eav~~~l~--~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~~E~~~~f-~l~v~ 228 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGR--RHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRF-NLRFA 228 (968)
T ss_dssp SCCCHHHHHHHHHHHH--SSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHHHHHHHHS-CCCCE
T ss_pred CCCcHHHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHHHHHHHHHHHh-CCCEE
Confidence 4799999999999987 44678999999999999999999999988888889999999999999999999998 67777
Q ss_pred EEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHH---hhhhcC
Q 044798 480 LLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLG---EKLLDV 556 (1231)
Q Consensus 480 il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~---~~L~~~ 556 (1231)
++++.......... . .....++|+|+||+.+.... ..+...
T Consensus 229 v~~~~~~~~~~~~~---------------------------~---------~~~~~~dIvI~T~~~L~~~~~~~~~l~~~ 272 (968)
T 3dmq_A 229 LFDDERYAEAQHDA---------------------------Y---------NPFDTEQLVICSLDFARRSKQRLEHLCEA 272 (968)
T ss_dssp ECCHHHHHHHHHTT---------------------------C---------SSSTTCSEEEECHHHHHTSTTTTHHHHTS
T ss_pred EEccchhhhhhhhc---------------------------c---------cccccCCEEEEcHHHHhhCHHHHHHhhhc
Confidence 77754321100000 0 01123589999999997643 446778
Q ss_pred CccEEEEeCCcccCCcchH---HHHHHHhc--ccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhcccccc
Q 044798 557 EWGYAVLDEGHRIRNPNAE---ISLVCKQL--QTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITV 631 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~~Sk---~skalk~L--~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~ 631 (1231)
.|++||+||||+++|..+. .++++..+ ++.++|+|||||++|++.|+|++++|+.|+.+++...|...+......
T Consensus 273 ~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i 352 (968)
T 3dmq_A 273 EWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPV 352 (968)
T ss_dssp CCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHH
T ss_pred CCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHH
Confidence 9999999999999997755 47788888 678899999999999999999999999999999999888765322110
Q ss_pred ---------CC---------CCCCC------hh-------hHhHHHHHHHHHHHHHh-----HHHHHHHHHHHhhcCCCc
Q 044798 632 ---------GG---------YANAS------PL-------QVSTAYRCAVVLRDLIM-----PYLLRRMKADVNAQLPKK 675 (1231)
Q Consensus 632 ---------g~---------~~~as------~~-------~v~~~~k~~~~Lr~lI~-----p~~LRRtK~dV~~dLP~K 675 (1231)
+. ....- +. ...........+..++. .+++|+++..+ ..+|.+
T Consensus 353 ~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i-~~~p~r 431 (968)
T 3dmq_A 353 ADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGV-KGFPKR 431 (968)
T ss_dssp HHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTC-CCCCCC
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhh-cccChh
Confidence 00 00000 00 00000001112233332 34556666555 478999
Q ss_pred eEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHH
Q 044798 676 TEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVL 755 (1231)
Q Consensus 676 ~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLL 755 (1231)
....+.+.+++..+..|...... ....+.... ...+.+|+.+...... ........+.|+..|.++|
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~---------~~~~~~~~~--~~~~l~pe~~~~~l~~--~~~~~~~~~~K~~~L~~ll 498 (968)
T 3dmq_A 432 ELHTIKLPLPTQYQTAIKVSGIM---------GARKSAEDR--ARDMLYPERIYQEFEG--DNATWWNFDPRVEWLMGYL 498 (968)
T ss_dssp CCCEEEECCCHHHHHHHHHHHHT---------TCCSSGGGG--THHHHCSGGGTTTTTS--SSCCTTTTSHHHHHHHHHH
T ss_pred heEeeecCCCHHHHHHHHHHhhh---------hhhhhhHHH--HhhhcChHHHHHHhhh--hhhcccCccHHHHHHHHHH
Confidence 99999999999988888643211 111111101 1112234333222111 1123345689999999999
Q ss_pred HHHHhcCCeEEEEeccHHHHHHHHHHHHH-cCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCC
Q 044798 756 KVWKDQGHRVLLFAQTQQMLDILESFLIA-SGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGAN 834 (1231)
Q Consensus 756 k~~~~~g~KVLVFSQ~~~~LdiLe~~L~~-~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~An 834 (1231)
.. ..+.|+||||+++.+++.|...|.. .|+++..+||+|+..+|..+++.|+++.+...+|++|+++++|||++.|+
T Consensus 499 ~~--~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~ 576 (968)
T 3dmq_A 499 TS--HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFAS 576 (968)
T ss_dssp HH--TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCC
T ss_pred Hh--CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCc
Confidence 87 5688999999999999999999995 59999999999999999999999999863445577899999999999999
Q ss_pred EEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhcC
Q 044798 835 RVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKN 896 (1231)
Q Consensus 835 rVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~d 896 (1231)
+||+||+||||..+.|++||++|+||++.|+||+++..+|+|++|++.+..|..+....+..
T Consensus 577 ~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~~~~t~ee~i~~~~~~k~~~~~~~~~~ 638 (968)
T 3dmq_A 577 HMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPT 638 (968)
T ss_dssp EEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCCSSSCCSS
T ss_pred EEEEecCCCCHHHHHHHhhccccCCCCceEEEEEecCCChHHHHHHHHHHhCCCceecCCCC
Confidence 99999999999999999999999999999999999999999999999999888776555543
No 5
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.7e-46 Score=441.37 Aligned_cols=428 Identities=15% Similarity=0.144 Sum_probs=285.0
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHc--CCCe
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWY--PSFH 477 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~--p~lr 477 (1231)
.|+|||.+++.|++. + ++||+++||+|||+++++++..+.. ...+++|||||. .|+.||.++|.+|+ |..+
T Consensus 9 ~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~-~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 82 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLT-KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (494)
T ss_dssp CCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHH-HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhh
Confidence 799999999999854 3 9999999999999999999877655 456799999997 89999999999998 5668
Q ss_pred EEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHh--hhhc
Q 044798 478 VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGE--KLLD 555 (1231)
Q Consensus 478 V~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~--~L~~ 555 (1231)
+.+++|........ . ....++|+|+||+.+..... .+..
T Consensus 83 v~~~~g~~~~~~~~--------------------------------------~-~~~~~~ivv~T~~~l~~~~~~~~~~~ 123 (494)
T 1wp9_A 83 IVALTGEKSPEERS--------------------------------------K-AWARAKVIVATPQTIENDLLAGRISL 123 (494)
T ss_dssp EEEECSCSCHHHHH--------------------------------------H-HHHHCSEEEECHHHHHHHHHTTSCCT
T ss_pred eEEeeCCcchhhhh--------------------------------------h-hccCCCEEEecHHHHHHHHhcCCcch
Confidence 88888764321100 0 11235899999999987654 3556
Q ss_pred CCccEEEEeCCcccCCcchHHH--HHHH-hcccccEEEecccCccCChHHHHHhhhhhcCCCCC---ChhHHHHhhcccc
Q 044798 556 VEWGYAVLDEGHRIRNPNAEIS--LVCK-QLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLG---VLPVFEAEFAVPI 629 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN~~Sk~s--kalk-~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg---~~~~F~~~f~~pI 629 (1231)
..|++||+||||++++..+... ..+. .....++|+|||||. |+..+++.++.++.+.... ....+...|..+.
T Consensus 124 ~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTaTp~-~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 202 (494)
T 1wp9_A 124 EDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPG-STPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGI 202 (494)
T ss_dssp TSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCEEEEESCSC-SSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCC
T ss_pred hhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeEEEEecCCC-CCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCC
Confidence 6899999999999997543322 2222 235778999999999 7777787777777554322 2111222222111
Q ss_pred ccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHH----HHHHHHHhh-------
Q 044798 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQR----AVYRAFLAS------- 698 (1231)
Q Consensus 630 ~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr----~lY~~~l~s------- 698 (1231)
........ .......+...+.+++.++.+......+..... ..++.... ..+..++..
T Consensus 203 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (494)
T 1wp9_A 203 RFEWVRVD-------LPEIYKEVRKLLREMLRDALKPLAETGLLESSS----PDIPKKEVLRAGQIINEEMAKGNHDLRG 271 (494)
T ss_dssp CEEEEEEC-------CCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCC----TTSCHHHHHHHHHHHHHHHTTTCCSTTT
T ss_pred ceeEEecC-------CcHHHHHHHHHHHHHHHHHHHHHHHhccccccC----CCcchhHHHHHHHHHHHHhhccccchhh
Confidence 11000000 011234567778888888887665544332211 11222111 001111100
Q ss_pred -----HH------HHHHhh--cCcchhHHHHHH------------HHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHH
Q 044798 699 -----SE------VEQILD--GSRNSLYGIDVM------------RKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQ 753 (1231)
Q Consensus 699 -----~~------~~~il~--~~~~~l~~i~~L------------RkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~e 753 (1231)
.. ...... +.......+..+ +.++.++.+......+.. .......+.|+..|.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~l~~ 350 (494)
T 1wp9_A 272 LLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQ-AKEIGLDHPKMDKLKE 350 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHH-HHHHTCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHH-HHhcCCCChHHHHHHH
Confidence 00 000000 000000011111 122222222111100000 0001145789999999
Q ss_pred HHHHHH--hcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeC--------CCCHHHHHHHHHHHhCCCCceEEEEeccc
Q 044798 754 VLKVWK--DQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDG--------LTPVKQRMALIDEYNNSSDVFIFILTTKV 823 (1231)
Q Consensus 754 LLk~~~--~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdG--------sts~~eRq~iId~Fn~d~~i~VfLlSTkv 823 (1231)
+|..+. ..++|+||||+++.+++.|..+|...|+.+..++| +++..+|+.+++.|+++. +. +|++|++
T Consensus 351 ~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~-~~-vLv~T~~ 428 (494)
T 1wp9_A 351 IIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARGE-FN-VLVATSV 428 (494)
T ss_dssp HHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHTS-CS-EEEECGG
T ss_pred HHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccccccCCHHHHHHHHHHHhcCC-ce-EEEECCc
Confidence 999876 56899999999999999999999999999999999 899999999999999874 44 4788999
Q ss_pred cccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHH
Q 044798 824 GGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTN 891 (1231)
Q Consensus 824 Gg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~rQ~~K~~L~n 891 (1231)
+++||||++|++||+||++|||..+.||+||++|.|| +.+|+|++.||+||++|.++..|+.+++
T Consensus 429 ~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~---g~~~~l~~~~t~ee~~~~~~~~k~~~~~ 493 (494)
T 1wp9_A 429 GEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP---GRVIILMAKGTRDEAYYWSSRQKEKIMQ 493 (494)
T ss_dssp GGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC---SEEEEEEETTSHHHHHHHHCC-------
T ss_pred cccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC---ceEEEEEecCCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999998 8999999999999999999999988765
No 6
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=100.00 E-value=6e-44 Score=399.53 Aligned_cols=251 Identities=30% Similarity=0.456 Sum_probs=196.9
Q ss_pred HHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhh-----cCcchhHHHHHHHHHhCChhhhhhhhhc
Q 044798 660 LLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILD-----GSRNSLYGIDVMRKICNHPDLLEREQSC 734 (1231)
Q Consensus 660 ~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~-----~~~~~l~~i~~LRkicnHPdLl~~~~~~ 734 (1231)
-+||+|.+|..+||++.+++++|+||+.|+.+|+.++...... +.. .....+..+..||++||||.++...
T Consensus 13 ~~rr~k~~v~~~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~--- 88 (271)
T 1z5z_A 13 GLVPRGSHMASDLPDKIETNVYCNLTPEQAAMYKAEVENLFNN-IDSVTGIKRKGMILSTLLKLKQIVDHPALLKGG--- 88 (271)
T ss_dssp ---------------CEEEEEEECCCHHHHHHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCS---
T ss_pred cccccHHHHHhhCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHH-HHhccccchHHHHHHHHHHHHHHcCCHHHhcCC---
Confidence 4799999999999999999999999999999999987653211 111 1224566788999999999998621
Q ss_pred CCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc-CCcEEEEeCCCCHHHHHHHHHHHhCCCC
Q 044798 735 QIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS-GYEYRRMDGLTPVKQRMALIDEYNNSSD 813 (1231)
Q Consensus 735 ~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~-Gi~~~rIdGsts~~eRq~iId~Fn~d~~ 813 (1231)
......|+|+..|.++|..+...++|+||||+|+.++++|+.+|... |+.+.+++|+++..+|+.+++.|+++++
T Consensus 89 ----~~~~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~ 164 (271)
T 1z5z_A 89 ----EQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPS 164 (271)
T ss_dssp ----CCCSTTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTT
T ss_pred ----ccccccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCC
Confidence 12346799999999999999888999999999999999999999985 9999999999999999999999999988
Q ss_pred ceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHH
Q 044798 814 VFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKI 893 (1231)
Q Consensus 814 i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~rQ~~K~~L~n~v 893 (1231)
+.|||++|++||+||||++|++||+|||||||..+.||+||+||+||+++|+||+|++.||+||+|++++..|..+++.+
T Consensus 165 ~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~TiEe~i~~~~~~K~~l~~~~ 244 (271)
T 1z5z_A 165 VKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGTLEEKIDQLLAFKRSLFKDI 244 (271)
T ss_dssp CCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTSHHHHHHHHHHHCHHHHTTG
T ss_pred CCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCCHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCcc-hhcccCHhHHHHhhccCCCC
Q 044798 894 LKNPQ-QRRFFKARNMKDLFTLNDDG 918 (1231)
Q Consensus 894 l~d~~-~~r~f~~~dl~dLF~l~~~~ 918 (1231)
+++.. ....|+.+||.+||++++++
T Consensus 245 ~~~~~~~~~~~~~~~l~~l~~~~~~~ 270 (271)
T 1z5z_A 245 ISSGDSWITELSTEELRKVIELSVGG 270 (271)
T ss_dssp GGGTTHHHHTSCHHHHHHHHSCCCTT
T ss_pred HccCchhhhcCCHHHHHHHhccCCCC
Confidence 98644 45679999999999998754
No 7
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.4e-40 Score=395.42 Aligned_cols=353 Identities=19% Similarity=0.273 Sum_probs=257.1
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCe-
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFH- 477 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lr- 477 (1231)
..|+|||.+++.+++ .+.++||+++||+|||++++.++..+ .+++|||||. .|+.||.++|.+| +..
T Consensus 92 ~~l~~~Q~~ai~~i~----~~~~~ll~~~TGsGKT~~~l~~i~~~-----~~~~Lvl~P~~~L~~Q~~~~~~~~--~~~~ 160 (472)
T 2fwr_A 92 ISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGIF--GEEY 160 (472)
T ss_dssp CCBCHHHHHHHHHHT----TTTEEEEECCTTSCHHHHHHHHHHHH-----CSCEEEEESSHHHHHHHHHHGGGG--CGGG
T ss_pred CCcCHHHHHHHHHHH----hcCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHhC--CCcc
Confidence 369999999999873 34579999999999999998887765 4799999998 9999999999995 566
Q ss_pred EEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcCC
Q 044798 478 VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVE 557 (1231)
Q Consensus 478 V~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~~ 557 (1231)
+.++++... ...+|+|+||+.+......+. ..
T Consensus 161 v~~~~g~~~-----------------------------------------------~~~~Ivv~T~~~l~~~~~~~~-~~ 192 (472)
T 2fwr_A 161 VGEFSGRIK-----------------------------------------------ELKPLTVSTYDSAYVNAEKLG-NR 192 (472)
T ss_dssp EEEBSSSCB-----------------------------------------------CCCSEEEEEHHHHHHTHHHHT-TT
T ss_pred eEEECCCcC-----------------------------------------------CcCCEEEEEcHHHHHHHHHhc-CC
Confidence 777775431 124799999999987766553 46
Q ss_pred ccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCCCCC
Q 044798 558 WGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANA 637 (1231)
Q Consensus 558 wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~~a 637 (1231)
|++||+||||++.++... ..+..+...++|+|||||.+++-.+.
T Consensus 193 ~~liIvDEaH~~~~~~~~--~~~~~~~~~~~l~lSATp~~~~~~~~---------------------------------- 236 (472)
T 2fwr_A 193 FMLLIFDEVHHLPAESYV--QIAQMSIAPFRLGLTATFEREDGRHE---------------------------------- 236 (472)
T ss_dssp CSEEEEETGGGTTSTTTH--HHHHTCCCSEEEEEESCCCCTTSGGG----------------------------------
T ss_pred CCEEEEECCcCCCChHHH--HHHHhcCCCeEEEEecCccCCCCHHH----------------------------------
Confidence 999999999999987654 46666788999999999987542220
Q ss_pred ChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhh-cCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcc------
Q 044798 638 SPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNA-QLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRN------ 710 (1231)
Q Consensus 638 s~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~-dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~------ 710 (1231)
.|..++.+.+.++...++.. .+++.....+.+.+++.++..|..+.... ...+.....
T Consensus 237 -------------~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~ 301 (472)
T 2fwr_A 237 -------------ILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVY--KQFLRARGITLRRAE 301 (472)
T ss_dssp -------------SHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHH--HSCSSSCCCTTTCCS
T ss_pred -------------HHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHH--HHHHHhcCccccchh
Confidence 01222233333333333422 36777777889999999998887654321 111110000
Q ss_pred -----------------hhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHH
Q 044798 711 -----------------SLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQ 773 (1231)
Q Consensus 711 -----------------~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~ 773 (1231)
.+......+.++ ...+.|+..|.++|.. ..++++||||+++.
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~k~~~l~~~l~~--~~~~k~lvF~~~~~ 360 (472)
T 2fwr_A 302 DFNKIVMASGYDERAYEALRAWEEARRIA-------------------FNSKNKIRKLREILER--HRKDKIIIFTRHNE 360 (472)
T ss_dssp SSTTTTTTTCCSSSSSTTTHHHHHHHHHH-------------------HSCSHHHHHHHHHHHH--TSSSCBCCBCSCHH
T ss_pred hHHHHHHHhccCHHHHHHHHHHHHHHHHh-------------------hcChHHHHHHHHHHHh--CCCCcEEEEECCHH
Confidence 000000011110 1246799999999987 45889999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHH
Q 044798 774 MLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARE 853 (1231)
Q Consensus 774 ~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAig 853 (1231)
+++.|...|. +..++|.++..+|+.+++.|+++ .+.| |++|+++++|+|++.++.||+||++|||..+.|++|
T Consensus 361 ~~~~l~~~l~-----~~~~~g~~~~~~R~~~~~~F~~g-~~~v-Lv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~G 433 (472)
T 2fwr_A 361 LVYRISKVFL-----IPAITHRTSREEREEILEGFRTG-RFRA-IVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLG 433 (472)
T ss_dssp HHHHHHHHTT-----CCBCCSSSCSHHHHTHHHHHHHS-SCSB-CBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHH
T ss_pred HHHHHHHHhC-----cceeeCCCCHHHHHHHHHHHhCC-CCCE-EEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHh
Confidence 9999999883 55789999999999999999986 4555 688999999999999999999999999999999999
Q ss_pred hHHhhCCc-ccEEEEEEEeCCCHHHHHHHHHHHHHHHH
Q 044798 854 RAWRIGQK-QDVTVYRLITRGTIEEKVYHRQIYKHFLT 890 (1231)
Q Consensus 854 Ra~RiGQk-k~V~VYRLit~gTIEEkIy~rQ~~K~~L~ 890 (1231)
|++|.||. +.|+||.|++.+|+||++++++..|..++
T Consensus 434 R~~R~g~~k~~~~i~~lv~~~t~ee~~~~~r~~~~~~a 471 (472)
T 2fwr_A 434 RILRPSKGKKEAVLYELISRGTGEVNTARRRKNAAKGA 471 (472)
T ss_dssp HSBCCCTTTCCEEEEEEEECSCC---------------
T ss_pred hccCCCCCCceEEEEEEEeCCCchHHHHHHHHHhhccC
Confidence 99999998 78999999999999999999998777653
No 8
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=2e-38 Score=383.74 Aligned_cols=432 Identities=15% Similarity=0.140 Sum_probs=233.4
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCC---CCcEEEEeCC-cchHHHHHHHHHHcC-
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM---YKPSIVVCPV-TLLRQWKREAEKWYP- 474 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~---~kpvLIV~P~-sLl~QW~~E~~kw~p- 474 (1231)
..|+|||.+++.++. .+.++|++++||+|||++++.++........ .+++|||||. .|+.||.++|.+|++
T Consensus 6 ~~~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 6 KKARSYQIELAQPAI----NGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp --CCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHH----cCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 368999999999984 4678999999999999998888777665544 6789999997 899999999999987
Q ss_pred -CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh-
Q 044798 475 -SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK- 552 (1231)
Q Consensus 475 -~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~- 552 (1231)
++++.+++|..... ..|... ...++|+|+||+.+......
T Consensus 82 ~~~~~~~~~g~~~~~---------------------------------~~~~~~-----~~~~~i~v~T~~~l~~~~~~~ 123 (556)
T 4a2p_A 82 QGYSVQGISGENFSN---------------------------------VSVEKV-----IEDSDIIVVTPQILVNSFEDG 123 (556)
T ss_dssp GTCCEEECCCC--------------------------------------CHHHH-----HHHCSEEEECHHHHHHHHHSS
T ss_pred cCceEEEEeCCCCcc---------------------------------hhHHHh-----hCCCCEEEECHHHHHHHHHhC
Confidence 67888877654211 001111 12368999999999876643
Q ss_pred -h-hcCCccEEEEeCCcccCCcchHHHHHHHhc--------ccccEEEecccCccCChH-------HHHHhhhhhcCCC-
Q 044798 553 -L-LDVEWGYAVLDEGHRIRNPNAEISLVCKQL--------QTVHRIIMTGAPIQNKLS-------ELWSLFDFVFPGK- 614 (1231)
Q Consensus 553 -L-~~~~wd~VILDEAH~IKN~~Sk~skalk~L--------~t~~RllLTGTPiqNnl~-------EL~SLl~FL~P~~- 614 (1231)
+ ....|++||+||||++.+...........+ ...++++|||||.+++.. .+..+...+.+..
T Consensus 124 ~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~ 203 (556)
T 4a2p_A 124 TLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAI 203 (556)
T ss_dssp SCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEE
T ss_pred cccccccCCEEEEECCcccCCcchHHHHHHHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEe
Confidence 3 345789999999999998765322211222 225789999999886532 2223333333221
Q ss_pred ---CCChhHHHHhhccccccCCCCC--CChhhHhHHHHHHHHHHHHHhH----------------------HHHHHHHHH
Q 044798 615 ---LGVLPVFEAEFAVPITVGGYAN--ASPLQVSTAYRCAVVLRDLIMP----------------------YLLRRMKAD 667 (1231)
Q Consensus 615 ---lg~~~~F~~~f~~pI~~g~~~~--as~~~v~~~~k~~~~Lr~lI~p----------------------~~LRRtK~d 667 (1231)
......+...+..|........ ....-..........+..++.. ++....+..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 283 (556)
T 4a2p_A 204 STVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKC 283 (556)
T ss_dssp ECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHH
T ss_pred cchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHH
Confidence 1233445454444432221111 1111111111122222222221 111111111
Q ss_pred HhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHH------HHhhcCcchhHHHHHHHHHhC------------------
Q 044798 668 VNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVE------QILDGSRNSLYGIDVMRKICN------------------ 723 (1231)
Q Consensus 668 V~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~------~il~~~~~~l~~i~~LRkicn------------------ 723 (1231)
....+| ....+..+|..+....... ............+..+...|.
T Consensus 284 ~~~~~~----------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 353 (556)
T 4a2p_A 284 RLLQLE----------DKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKF 353 (556)
T ss_dssp HHC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred Hhhccc----------ccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 111111 1122223333222111000 000000011111111222111
Q ss_pred --ChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHH--hcCCeEEEEeccHHHHHHHHHHHHHc------------CC
Q 044798 724 --HPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWK--DQGHRVLLFAQTQQMLDILESFLIAS------------GY 787 (1231)
Q Consensus 724 --HPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~--~~g~KVLVFSQ~~~~LdiLe~~L~~~------------Gi 787 (1231)
....+..... .....++|+..|.++|..+. ..++|+||||+++.+++.|..+|... |.
T Consensus 354 ~~~~~~l~~~~~------~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~ 427 (556)
T 4a2p_A 354 QEKEPELIALSK------DETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGR 427 (556)
T ss_dssp HTTHHHHHHHHH------CSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC----
T ss_pred hhHHHHhhhhcc------CCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEcc
Confidence 1100000000 11135899999999998876 56789999999999999999999875 56
Q ss_pred cEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEE
Q 044798 788 EYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVY 867 (1231)
Q Consensus 788 ~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VY 867 (1231)
.+..++|+++..+|..+++.|+++..+.| |++|+++++|||+++++.||+||+||||..|.||+|| + +.+++.+|
T Consensus 428 ~~~~~~~~~~~~~R~~~~~~F~~~g~~~v-LvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-g---R~~~g~~~ 502 (556)
T 4a2p_A 428 GRRDQTTGMTLPSQKGVLDAFKTSKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-G---RAAGSKCI 502 (556)
T ss_dssp --------------------------CCE-EEEEC-----------CEEEEETCCSCHHHHHHC------------CCEE
T ss_pred CCcccccccCHHHHHHHHHHhcccCceEE-EEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-C---CCCCceEE
Confidence 66677788999999999999999445665 7899999999999999999999999999999999999 4 45789999
Q ss_pred EEEeCCCHHHHHHHHHHHHHHHHHHHhc
Q 044798 868 RLITRGTIEEKVYHRQIYKHFLTNKILK 895 (1231)
Q Consensus 868 RLit~gTIEEkIy~rQ~~K~~L~n~vl~ 895 (1231)
.|++.++++++ +..+..|..+++.++.
T Consensus 503 ~l~~~~~~~~~-~~~~~~k~~~~~~~i~ 529 (556)
T 4a2p_A 503 LVTSKTEVVEN-EKCNRYKEEMMNKAVE 529 (556)
T ss_dssp EEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred EEEeCcchHHH-HHhhHHHHHHHHHHHH
Confidence 99999999999 8888999999888875
No 9
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=5e-38 Score=399.77 Aligned_cols=440 Identities=15% Similarity=0.146 Sum_probs=241.3
Q ss_pred cccChhh--hhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCC---CCcEEEEeCC-cchHHH
Q 044798 392 LKIPESI--FNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM---YKPSIVVCPV-TLLRQW 465 (1231)
Q Consensus 392 ~~iP~~i--~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~---~kpvLIV~P~-sLl~QW 465 (1231)
+..|..+ ...|+|||.+++.++ ..+.++|++++||+|||++++.++........ .+++|||||. .|+.||
T Consensus 237 ~~~~~~~~g~~~l~~~Q~~~i~~~----l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~ 312 (797)
T 4a2q_A 237 IGKPPPVYETKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQ 312 (797)
T ss_dssp -----------CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHH
T ss_pred hcCchhhcCCCCCCHHHHHHHHHH----HhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHH
Confidence 3445555 568999999999988 34678999999999999998888877665544 6899999995 699999
Q ss_pred HHHHHHHcC--CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCH
Q 044798 466 KREAEKWYP--SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTY 543 (1231)
Q Consensus 466 ~~E~~kw~p--~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTY 543 (1231)
..+|.+|++ ++++.+++|...... .|. .+...++|+|+||
T Consensus 313 ~~~~~~~~~~~~~~v~~~~g~~~~~~---------------------------------~~~-----~~~~~~~Ivv~Tp 354 (797)
T 4a2q_A 313 KNVFKHHFERQGYSVQGISGENFSNV---------------------------------SVE-----KVIEDSDIIVVTP 354 (797)
T ss_dssp HHHHHHHHGGGTCCEEEECCC--------------------------------------CHH-----HHHHTCSEEEECH
T ss_pred HHHHHHhcccCCceEEEEeCCcchhh---------------------------------hHH-----HhhCCCCEEEEch
Confidence 999999987 788888887643110 011 1123568999999
Q ss_pred HHHHHHHhh--h-hcCCccEEEEeCCcccCCcchHHHHHHHhc--------ccccEEEecccCccCC----------hHH
Q 044798 544 EQLRLLGEK--L-LDVEWGYAVLDEGHRIRNPNAEISLVCKQL--------QTVHRIIMTGAPIQNK----------LSE 602 (1231)
Q Consensus 544 e~Lr~~~~~--L-~~~~wd~VILDEAH~IKN~~Sk~skalk~L--------~t~~RllLTGTPiqNn----------l~E 602 (1231)
+.+...... + ....|++||+||||++.+...........+ ...++++|||||.+++ +.+
T Consensus 355 ~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~ 434 (797)
T 4a2q_A 355 QILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICS 434 (797)
T ss_dssp HHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHH
Confidence 999876543 2 334689999999999998765222221222 2256899999998754 344
Q ss_pred HHHhhhhhcCC-CCCChhHHHHhhccccccCCCCC--CChhhHhHHHHHHHHHHHHHhHHH-------------------
Q 044798 603 LWSLFDFVFPG-KLGVLPVFEAEFAVPITVGGYAN--ASPLQVSTAYRCAVVLRDLIMPYL------------------- 660 (1231)
Q Consensus 603 L~SLl~FL~P~-~lg~~~~F~~~f~~pI~~g~~~~--as~~~v~~~~k~~~~Lr~lI~p~~------------------- 660 (1231)
|+.++++-... .......+...+..|........ ....-..........+..++..++
T Consensus 435 l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~ 514 (797)
T 4a2q_A 435 LCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYE 514 (797)
T ss_dssp HHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHH
T ss_pred HHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHH
Confidence 44444431111 12233445555554433221111 111111122222233333333221
Q ss_pred ---HHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHH------HHHhhcCcchhHHHHHHHHHhCCh------
Q 044798 661 ---LRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEV------EQILDGSRNSLYGIDVMRKICNHP------ 725 (1231)
Q Consensus 661 ---LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~------~~il~~~~~~l~~i~~LRkicnHP------ 725 (1231)
....+......+|. ...+..+|..+...... .............+..+...|.+.
T Consensus 515 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 584 (797)
T 4a2q_A 515 HWIVVTQRKCRLLQLED----------KEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYT 584 (797)
T ss_dssp HHHHHHHHHHHHCCCSS----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcccc----------cchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCcc
Confidence 11111111111111 11122222221110000 000001111111222222222110
Q ss_pred --------------hhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHH--hcCCeEEEEeccHHHHHHHHHHHHHc----
Q 044798 726 --------------DLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWK--DQGHRVLLFAQTQQMLDILESFLIAS---- 785 (1231)
Q Consensus 726 --------------dLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~--~~g~KVLVFSQ~~~~LdiLe~~L~~~---- 785 (1231)
..+..... .....++|+..|.++|..+. ..++|+||||+++.+++.|..+|...
T Consensus 585 ~~~~~l~~~~~~~~~~l~~~~~------~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~ 658 (797)
T 4a2q_A 585 ELEQHLTAKFQEKEPELIALSK------DETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILN 658 (797)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHH------CTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhhc------CCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccc
Confidence 00000000 11135899999999998754 55789999999999999999999873
Q ss_pred --------CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHh
Q 044798 786 --------GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWR 857 (1231)
Q Consensus 786 --------Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~R 857 (1231)
|+.+..+||+++..+|..+++.|+++..+. +|++|+++++|||+++|+.||+||+||||..|+||+|| +|
T Consensus 659 ~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~-vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR 736 (797)
T 4a2q_A 659 YIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR-LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GR 736 (797)
T ss_dssp SCCCEEC----------------------------CCS-EEEEECC-------CCCSEEEEESCCSCHHHHHTC------
T ss_pred cccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCce-EEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CC
Confidence 667778889999999999999999943555 47899999999999999999999999999999999999 54
Q ss_pred hCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhc
Q 044798 858 IGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895 (1231)
Q Consensus 858 iGQkk~V~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~ 895 (1231)
.+++.+|+|++.++++++ +..+..|..+++.++.
T Consensus 737 ---~~~g~~i~l~~~~~~ee~-~~~~~~ke~~~~~~i~ 770 (797)
T 4a2q_A 737 ---AAGSKCILVTSKTEVVEN-EKCNRYKEEMMNKAVE 770 (797)
T ss_dssp -----CCCEEEEECCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred ---CCCceEEEEEeCCcHHHH-HHHHHHHHHHHHHHHH
Confidence 588999999999999999 8889999999988875
No 10
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=6.4e-37 Score=369.57 Aligned_cols=431 Identities=15% Similarity=0.140 Sum_probs=252.9
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCC---CCcEEEEeCC-cchHHHHHHHHHHcC--
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM---YKPSIVVCPV-TLLRQWKREAEKWYP-- 474 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~---~kpvLIV~P~-sLl~QW~~E~~kw~p-- 474 (1231)
.|+|||.+++.++. .+.++|++++||+|||++++.++........ .+++|||||. .|+.||.++|.+|++
T Consensus 4 ~~~~~Q~~~i~~~~----~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAK----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHh----CCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 58999999999984 5678999999999999998888877665544 6789999997 999999999999986
Q ss_pred CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--
Q 044798 475 SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK-- 552 (1231)
Q Consensus 475 ~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~-- 552 (1231)
++++.+++|...... .|... ....+|+|+||+.+......
T Consensus 80 ~~~~~~~~g~~~~~~---------------------------------~~~~~-----~~~~~i~v~T~~~l~~~~~~~~ 121 (555)
T 3tbk_A 80 GYNIASISGATSDSV---------------------------------SVQHI-----IEDNDIIILTPQILVNNLNNGA 121 (555)
T ss_dssp TCCEEEECTTTGGGS---------------------------------CHHHH-----HHHCSEEEECHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchh---------------------------------hHHHH-----hcCCCEEEECHHHHHHHHhcCc
Confidence 678888876543110 01111 12468999999999876653
Q ss_pred h-hcCCccEEEEeCCcccCCcchHHHHHHHhc---------ccccEEEecccCccCChHH-------HHHhhhhhcCCCC
Q 044798 553 L-LDVEWGYAVLDEGHRIRNPNAEISLVCKQL---------QTVHRIIMTGAPIQNKLSE-------LWSLFDFVFPGKL 615 (1231)
Q Consensus 553 L-~~~~wd~VILDEAH~IKN~~Sk~skalk~L---------~t~~RllLTGTPiqNnl~E-------L~SLl~FL~P~~l 615 (1231)
+ ....|++||+||||++.+..+........+ ...++++|||||.+++..+ ++.+..++....+
T Consensus 122 ~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 201 (555)
T 3tbk_A 122 IPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVI 201 (555)
T ss_dssp SCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEE
T ss_pred ccccccCCEEEEECccccCCcchHHHHHHHHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeee
Confidence 2 344689999999999998765333222222 2246899999999876333 3333444443221
Q ss_pred ----CChhHHHHhhccccccCCCCC--CChhhHhHHHHHHHHHHHHHhHHH-----------------------HHHHHH
Q 044798 616 ----GVLPVFEAEFAVPITVGGYAN--ASPLQVSTAYRCAVVLRDLIMPYL-----------------------LRRMKA 666 (1231)
Q Consensus 616 ----g~~~~F~~~f~~pI~~g~~~~--as~~~v~~~~k~~~~Lr~lI~p~~-----------------------LRRtK~ 666 (1231)
.....+...+..|........ ....-..........+..++..++ ....+.
T Consensus 202 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~ 281 (555)
T 3tbk_A 202 ATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKA 281 (555)
T ss_dssp ECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHH
T ss_pred eccccCHHHHHhhcCCCceEEEEecCcccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHH
Confidence 123344444433332211111 111111111222222333322211 110000
Q ss_pred HHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHH------HHHhhcCcchhHHHHH--------------------HHH
Q 044798 667 DVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEV------EQILDGSRNSLYGIDV--------------------MRK 720 (1231)
Q Consensus 667 dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~------~~il~~~~~~l~~i~~--------------------LRk 720 (1231)
.....+|. ...+..+|..+...... ...+.........+.. +..
T Consensus 282 ~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (555)
T 3tbk_A 282 CSVFQMAD----------KEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRR 351 (555)
T ss_dssp HHTCCCSS----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHH
T ss_pred hhhhhccc----------hhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 00001111 11122222222111000 0000000000011111 112
Q ss_pred HhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhc--CCeEEEEeccHHHHHHHHHHHHHcC------------
Q 044798 721 ICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQ--GHRVLLFAQTQQMLDILESFLIASG------------ 786 (1231)
Q Consensus 721 icnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~--g~KVLVFSQ~~~~LdiLe~~L~~~G------------ 786 (1231)
.+..+..+..... .....+.|+..|.++|..+... +.|+||||+++.+++.|..+|...|
T Consensus 352 ~~~~~~~~~~~~~------~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g 425 (555)
T 3tbk_A 352 FEEKLEELEKVSR------DPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTG 425 (555)
T ss_dssp HHTTHHHHHHHHH------CGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC
T ss_pred Hhhhhhhhhhhcc------CCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEe
Confidence 2222222111100 0112478999999999987543 5899999999999999999999863
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEE
Q 044798 787 YEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866 (1231)
Q Consensus 787 i~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~V 866 (1231)
..+..+||+++..+|..+++.|++++.+.| |++|+++++|||++++++||+||+||||..|+||+|| |+.+++.+
T Consensus 426 ~~~~~~~~~~~~~~R~~~~~~F~~~g~~~v-LvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR----gR~~~g~~ 500 (555)
T 3tbk_A 426 RGRTNRATGMTLPAQKCVLEAFRASGDNNI-LIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR----GRARDSKC 500 (555)
T ss_dssp --------------------------CCSE-EEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC----CTTTSCEE
T ss_pred cCCcccccccCHHHHHHHHHHHhcCCCeeE-EEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc----CcCCCceE
Confidence 455666779999999999999999446666 6799999999999999999999999999999999999 66788999
Q ss_pred EEEEeCCCHHHHHHHHHHHHHHHHHHHhc
Q 044798 867 YRLITRGTIEEKVYHRQIYKHFLTNKILK 895 (1231)
Q Consensus 867 YRLit~gTIEEkIy~rQ~~K~~L~n~vl~ 895 (1231)
|.|++.++.+++ +..+..|..+++..+.
T Consensus 501 ~~l~~~~~~~~~-~~~~~~~e~~~~~~~~ 528 (555)
T 3tbk_A 501 FLLTSSADVIEK-EKANMIKEKIMNESIL 528 (555)
T ss_dssp EEEESCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCHHHH-HHHhhHHHHHHHHHHH
Confidence 999999999998 7778888888887774
No 11
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.6e-37 Score=400.95 Aligned_cols=442 Identities=15% Similarity=0.156 Sum_probs=238.2
Q ss_pred cccChhh--hhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCC---CCcEEEEeCC-cchHHH
Q 044798 392 LKIPESI--FNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM---YKPSIVVCPV-TLLRQW 465 (1231)
Q Consensus 392 ~~iP~~i--~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~---~kpvLIV~P~-sLl~QW 465 (1231)
+..|..+ ...|+|||.+++.|+ ..+.++|++++||+|||++++.++........ .+++|||||. .|+.||
T Consensus 237 ~~~~~~l~~~~~~r~~Q~~ai~~i----l~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~ 312 (936)
T 4a2w_A 237 IGKPPPVYETKKARSYQIELAQPA----INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQ 312 (936)
T ss_dssp -----------CCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHH
T ss_pred hcCcccccCCCCCCHHHHHHHHHH----HcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHH
Confidence 3344444 567999999999998 34678999999999999998887766654443 6789999996 699999
Q ss_pred HHHHHHHcC--CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCH
Q 044798 466 KREAEKWYP--SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTY 543 (1231)
Q Consensus 466 ~~E~~kw~p--~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTY 543 (1231)
..+|.+|++ ++++.+++|...... .+.. +...++|+|+||
T Consensus 313 ~~~~~~~~~~~~~~v~~~~G~~~~~~---------------------------------~~~~-----~~~~~~IvI~Tp 354 (936)
T 4a2w_A 313 KNVFKHHFERQGYSVQGISGENFSNV---------------------------------SVEK-----VIEDSDIIVVTP 354 (936)
T ss_dssp HHHHHHHHHTTTCCEEEECCC--------------------------------------CCHH-----HHHHCSEEEECH
T ss_pred HHHHHHHhcccCceEEEEECCcchhh---------------------------------HHHH-----hccCCCEEEecH
Confidence 999999987 688888887642110 0000 112368999999
Q ss_pred HHHHHHHhh--h-hcCCccEEEEeCCcccCCcchHHHHHHHhcc--------cccEEEecccCccCChH----------H
Q 044798 544 EQLRLLGEK--L-LDVEWGYAVLDEGHRIRNPNAEISLVCKQLQ--------TVHRIIMTGAPIQNKLS----------E 602 (1231)
Q Consensus 544 e~Lr~~~~~--L-~~~~wd~VILDEAH~IKN~~Sk~skalk~L~--------t~~RllLTGTPiqNnl~----------E 602 (1231)
+.+...... + ....|++||+||||++.+..+........+. ..++++|||||.+++.. +
T Consensus 355 ~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~ 434 (936)
T 4a2w_A 355 QILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICS 434 (936)
T ss_dssp HHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHH
Confidence 999876643 2 2346899999999999987653222222222 25789999999876543 3
Q ss_pred HHHhhhhhcCC-CCCChhHHHHhhccccccCCCCC--CChhhHhHHHHHHHHHHHHHhH---------------------
Q 044798 603 LWSLFDFVFPG-KLGVLPVFEAEFAVPITVGGYAN--ASPLQVSTAYRCAVVLRDLIMP--------------------- 658 (1231)
Q Consensus 603 L~SLl~FL~P~-~lg~~~~F~~~f~~pI~~g~~~~--as~~~v~~~~k~~~~Lr~lI~p--------------------- 658 (1231)
|+.+++.-... .......+...+..|........ ...............+..++..
T Consensus 435 L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~ 514 (936)
T 4a2w_A 435 LCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYE 514 (936)
T ss_dssp HHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHH
T ss_pred HHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHH
Confidence 44444321111 11233445554444433221111 1111111111122222222221
Q ss_pred -HHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHH------HHHhhcCcchhHHHHHHHHHhCCh------
Q 044798 659 -YLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEV------EQILDGSRNSLYGIDVMRKICNHP------ 725 (1231)
Q Consensus 659 -~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~------~~il~~~~~~l~~i~~LRkicnHP------ 725 (1231)
++....+......+|.. ..+..+|..+...... .............+..+...+...
T Consensus 515 ~~l~~l~k~~~~~~l~~~----------~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~ 584 (936)
T 4a2w_A 515 HWIVVTQRKCRLLQLEDK----------EEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYT 584 (936)
T ss_dssp HHHHHHHHHHHHCCCSCH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhccccc----------chhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCC
Confidence 11111111111122221 1122222221111000 000000011111112222221110
Q ss_pred ----hhhh--------hhhhcCCCCCCCCCcchHHHHHHHHHHHHH--hcCCeEEEEeccHHHHHHHHHHHHHc------
Q 044798 726 ----DLLE--------REQSCQIPDYGNPERSEKMKVVAQVLKVWK--DQGHRVLLFAQTQQMLDILESFLIAS------ 785 (1231)
Q Consensus 726 ----dLl~--------~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~--~~g~KVLVFSQ~~~~LdiLe~~L~~~------ 785 (1231)
.+.. ...... .....++|+..|.++|..+. ..++|+||||+++.+++.|..+|...
T Consensus 585 ~~e~~l~~~~~~~~~~l~~~~~----~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~i 660 (936)
T 4a2w_A 585 ELEQHLTAKFQEKEPELIALSK----DETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYI 660 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----STTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhh----ccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCcccccc
Confidence 0000 000000 11135899999999999864 45789999999999999999999986
Q ss_pred ------CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhC
Q 044798 786 ------GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIG 859 (1231)
Q Consensus 786 ------Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiG 859 (1231)
|..+..+||+|+..+|..+++.|+++..+.| |++|+++++||||++|+.||+||+||||..++||+|| |
T Consensus 661 k~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~V-LVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR----G 735 (936)
T 4a2w_A 661 KPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRL-LIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR----G 735 (936)
T ss_dssp CCEEC----------------------------CCSE-EEEECC------CCCCSEEEEESCCSCSHHHHCC--------
T ss_pred ceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeE-EEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC----C
Confidence 6666677888999999999999998435564 7899999999999999999999999999999999999 4
Q ss_pred CcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhc
Q 044798 860 QKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895 (1231)
Q Consensus 860 Qkk~V~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~ 895 (1231)
+.+++.+|+|++.+|++++.+ .+..|..++..++.
T Consensus 736 R~~~g~vi~Li~~~t~ee~~~-~~~~ke~~~~~~i~ 770 (936)
T 4a2w_A 736 RAAGSKCILVTSKTEVVENEK-CNRYKEEMMNKAVE 770 (936)
T ss_dssp ---CCCEEEEESCHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEeCCCHHHHHH-HHHHHHHHHHHHHH
Confidence 557888999999999999866 77788888887764
No 12
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=5.8e-34 Score=355.99 Aligned_cols=422 Identities=15% Similarity=0.145 Sum_probs=223.1
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCC---CCcEEEEeCC-cchHHHHHHHHHHcC-
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM---YKPSIVVCPV-TLLRQWKREAEKWYP- 474 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~---~kpvLIV~P~-sLl~QW~~E~~kw~p- 474 (1231)
..|+|||.+++.|+. .+.++|++++||+|||++++.++........ .+++|||||. .|+.||.++|.+|++
T Consensus 12 ~~lr~~Q~~~i~~~l----~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 12 FKPRNYQLELALPAM----KGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp -CCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCccHHHHHHHHHHH----cCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 468999999999984 4678999999999999998888776554433 2789999996 999999999999987
Q ss_pred -CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh-
Q 044798 475 -SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK- 552 (1231)
Q Consensus 475 -~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~- 552 (1231)
++++..++|..... ..+.. +....+|+|+||+.+......
T Consensus 88 ~~~~v~~~~g~~~~~---------------------------------~~~~~-----~~~~~~Iiv~Tp~~L~~~l~~~ 129 (696)
T 2ykg_A 88 HGYRVTGISGATAEN---------------------------------VPVEQ-----IVENNDIIILTPQILVNNLKKG 129 (696)
T ss_dssp TTCCEEEECSSSCSS---------------------------------SCHHH-----HHHTCSEEEECHHHHHHHHHTT
T ss_pred CCceEEEEeCCcccc---------------------------------ccHHH-----hccCCCEEEECHHHHHHHHhcC
Confidence 67888877654210 01111 113469999999999876643
Q ss_pred -h-hcCCccEEEEeCCcccCCcchHHHHHHHhc---------ccccEEEecccCccCC-------hHHHHHhhhhhcCCC
Q 044798 553 -L-LDVEWGYAVLDEGHRIRNPNAEISLVCKQL---------QTVHRIIMTGAPIQNK-------LSELWSLFDFVFPGK 614 (1231)
Q Consensus 553 -L-~~~~wd~VILDEAH~IKN~~Sk~skalk~L---------~t~~RllLTGTPiqNn-------l~EL~SLl~FL~P~~ 614 (1231)
+ ....|++||+||||++.+..+........+ ...++|+|||||..++ +..++.++..+....
T Consensus 130 ~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~ 209 (696)
T 2ykg_A 130 TIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASV 209 (696)
T ss_dssp SSCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCE
T ss_pred cccccccccEEEEeCCCcccCcccHHHHHHHHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCce
Confidence 2 345789999999999998765333332222 3467899999998543 455555555444332
Q ss_pred CC----ChhHHHHhhccccccCC---CCCCChhhHhHHHHHHHHHHHHHh-----------------------HHHHHHH
Q 044798 615 LG----VLPVFEAEFAVPITVGG---YANASPLQVSTAYRCAVVLRDLIM-----------------------PYLLRRM 664 (1231)
Q Consensus 615 lg----~~~~F~~~f~~pI~~g~---~~~as~~~v~~~~k~~~~Lr~lI~-----------------------p~~LRRt 664 (1231)
+. ...........|..... ......+ ..+.......+..+.. .++.++.
T Consensus 210 ~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~f-s~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (696)
T 2ykg_A 210 IATVKHNLEELEQVVYKPQKFFRKVESRISDKF-KYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQ 288 (696)
T ss_dssp EECCCTTHHHHHHHSCCCEEEEEECCCCSCCHH-HHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHH
T ss_pred EeecccchHHHHhhcCCCceeEEecCcccCChH-HHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHH
Confidence 22 12222222222311100 0000000 0000100011111111 1122222
Q ss_pred HHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhH------HHHHHhhcCcchhHHHHHHHHHhCC------hhhhhhhh
Q 044798 665 KADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASS------EVEQILDGSRNSLYGIDVMRKICNH------PDLLEREQ 732 (1231)
Q Consensus 665 K~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~------~~~~il~~~~~~l~~i~~LRkicnH------PdLl~~~~ 732 (1231)
+......+|.+.+ +..++..+.... ...............+..+...+.. +.+-....
T Consensus 289 ~~~~~~~~~~~~~----------~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 358 (696)
T 2ykg_A 289 KACMVFQMPDKDE----------ESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLT 358 (696)
T ss_dssp HTSCC------CC----------HHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHhhcccchh----------hhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHH
Confidence 2211112222111 111111110000 0000000000000111111111100 00000000
Q ss_pred hc---CC-----CCCCCCCcchHHHHHHHHHHHHH--hcCCeEEEEeccHHHHHHHHHHHHHcC----CcEEEEeC----
Q 044798 733 SC---QI-----PDYGNPERSEKMKVVAQVLKVWK--DQGHRVLLFAQTQQMLDILESFLIASG----YEYRRMDG---- 794 (1231)
Q Consensus 733 ~~---~~-----~d~~~~~~S~Kl~~L~eLLk~~~--~~g~KVLVFSQ~~~~LdiLe~~L~~~G----i~~~rIdG---- 794 (1231)
.. .. ........+.|+..|.++|.... ..+.++||||+++.+++.|..+|...| +++..++|
T Consensus 359 ~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~ 438 (696)
T 2ykg_A 359 QRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKT 438 (696)
T ss_dssp HHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-------
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCC
Confidence 00 00 00000124789999999998764 356799999999999999999999998 89999955
Q ss_pred ----CCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEE
Q 044798 795 ----LTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLI 870 (1231)
Q Consensus 795 ----sts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLi 870 (1231)
+++..+|..+++.|+++..+.| |++|+++++|||+++++.||+||+|||+..|.||+|| +|. ++..+|.|+
T Consensus 439 ~~h~~~~~~eR~~v~~~F~~~g~~~v-LVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~---~~g~~~~l~ 513 (696)
T 2ykg_A 439 NQNTGMTLPAQKCILDAFKASGDHNI-LIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA---RGSKCFLLT 513 (696)
T ss_dssp ----------------------CCSC-SEEEESSCCC---CCCSEEEEESCC--CCCC-------------CCCEEEEEE
T ss_pred ccccCCCHHHHHHHHHHHHhcCCccE-EEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC---CCceEEEEe
Confidence 9999999999999998325555 7899999999999999999999999999999999999 884 667889999
Q ss_pred eCCCHHHHH
Q 044798 871 TRGTIEEKV 879 (1231)
Q Consensus 871 t~gTIEEkI 879 (1231)
+.+++++..
T Consensus 514 ~~~~~~~~~ 522 (696)
T 2ykg_A 514 SNAGVIEKE 522 (696)
T ss_dssp SCHHHHHHH
T ss_pred cCCCHHHHH
Confidence 999887654
No 13
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=353.50 Aligned_cols=422 Identities=16% Similarity=0.136 Sum_probs=251.9
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcC----CCCcEEEEeCC-cchHHH-HHHHHHHcC
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN----MYKPSIVVCPV-TLLRQW-KREAEKWYP 474 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~----~~kpvLIV~P~-sLl~QW-~~E~~kw~p 474 (1231)
.|+|||.+++.+++. +.++||+++||+|||++++.++..+...+ ..+++|||||. .|+.|| .++|.+|++
T Consensus 7 ~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 7 QLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 689999999999844 67899999999999999888876654433 33789999996 699999 999999998
Q ss_pred C-CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHh--
Q 044798 475 S-FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGE-- 551 (1231)
Q Consensus 475 ~-lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~-- 551 (1231)
. +++..++|..... ..+.. +....+|+|+||+.+.....
T Consensus 83 ~~~~v~~~~g~~~~~---------------------------------~~~~~-----~~~~~~Ilv~Tp~~L~~~l~~~ 124 (699)
T 4gl2_A 83 KWYRVIGLSGDTQLK---------------------------------ISFPE-----VVKSCDIIISTAQILENSLLNL 124 (699)
T ss_dssp TTSCEEEEC----CC---------------------------------CCHHH-----HHHSCSEEEEEHHHHHHHTC--
T ss_pred cCceEEEEeCCcchh---------------------------------hHHHh-----hhcCCCEEEECHHHHHHHHhcc
Confidence 7 8888888754310 01111 12456999999999986542
Q ss_pred ------hhhcCCccEEEEeCCcccCCcch---HHHHHHHh-c-------------ccccEEEecccCccCCh-------H
Q 044798 552 ------KLLDVEWGYAVLDEGHRIRNPNA---EISLVCKQ-L-------------QTVHRIIMTGAPIQNKL-------S 601 (1231)
Q Consensus 552 ------~L~~~~wd~VILDEAH~IKN~~S---k~skalk~-L-------------~t~~RllLTGTPiqNnl-------~ 601 (1231)
.+....|++||+||||++.+... .....+.. + ...++++|||||..++. .
T Consensus 125 ~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~ 204 (699)
T 4gl2_A 125 ENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEE 204 (699)
T ss_dssp ------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHH
T ss_pred ccccccceecccCcEEEEECccccCccchHHHHHHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHH
Confidence 23445799999999999865332 11112211 1 44678999999998633 3
Q ss_pred HHHHhhhhhcCCCCC----ChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceE
Q 044798 602 ELWSLFDFVFPGKLG----VLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTE 677 (1231)
Q Consensus 602 EL~SLl~FL~P~~lg----~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e 677 (1231)
++..++..+.+..+. ....+...+..|............ .........+...+..++ ++.+..
T Consensus 205 ~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~--~~~~~~l~~l~~~i~~~~----------~~~~~~- 271 (699)
T 4gl2_A 205 HILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADATRE--DPFKEKLLEIMTRIQTYC----------QMSPMS- 271 (699)
T ss_dssp HHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-------CHHHHHHHHHHHHHHHH----------TCCCCS-
T ss_pred HHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccccC--ChHHHHHHHHHHHHHHHh----------ccCcch-
Confidence 344444555552222 223444444443321111110000 000111111222221111 111100
Q ss_pred EEEEecCCHHHHHHHHHHHhhHHHHHHhhc----------------------CcchhHHHHHHHHHhCC-----------
Q 044798 678 HVLFCSLTEEQRAVYRAFLASSEVEQILDG----------------------SRNSLYGIDVMRKICNH----------- 724 (1231)
Q Consensus 678 ~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~----------------------~~~~l~~i~~LRkicnH----------- 724 (1231)
.+. ...|..++........... .......+..++..+..
T Consensus 272 -----~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 343 (699)
T 4gl2_A 272 -----DFG---TQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIED 343 (699)
T ss_dssp -----CSS---SHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC-----
T ss_pred -----hcc---chHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 000 0112211111000000000 00000011111111000
Q ss_pred -----------hhhhhh---------hhhcCCCCCCCCCcchHHHHHHHHHHHHHhc---CCeEEEEeccHHHHHHHHHH
Q 044798 725 -----------PDLLER---------EQSCQIPDYGNPERSEKMKVVAQVLKVWKDQ---GHRVLLFAQTQQMLDILESF 781 (1231)
Q Consensus 725 -----------PdLl~~---------~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~---g~KVLVFSQ~~~~LdiLe~~ 781 (1231)
+..+.. ...... ....+.|+..|.++|...... +.++||||+++.+++.|..+
T Consensus 344 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~----~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~ 419 (699)
T 4gl2_A 344 DLKKPLKLDETDRFLMTLFFENNKMLKRLAEN----PEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQW 419 (699)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHTC----CC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHH
Confidence 000000 000000 111456777788888775432 78999999999999999999
Q ss_pred HHHc------CCcEEEEeCC--------CCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcch
Q 044798 782 LIAS------GYEYRRMDGL--------TPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPST 847 (1231)
Q Consensus 782 L~~~------Gi~~~rIdGs--------ts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~ 847 (1231)
|... |+++..++|. ++..+|..+++.|+++ .+. +|++|+++++|||+++++.||+||+||||..
T Consensus 420 L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g-~~~-VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~ 497 (699)
T 4gl2_A 420 ITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTG-KIN-LLIATTVAEEGLDIKECNIVIRYGLVTNEIA 497 (699)
T ss_dssp HHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC----C-CSEEECSCCTTSCCCSCCCCEEESCCCCHHH
T ss_pred HHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcC-CCc-EEEEccccccCCccccCCEEEEeCCCCCHHH
Confidence 9987 9999999999 9999999999999997 444 4789999999999999999999999999999
Q ss_pred HHHHHHhHHhhCCcccEEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhc
Q 044798 848 DVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 895 (1231)
Q Consensus 848 d~QAigRa~RiGQkk~V~VYRLit~gTIEEkIy~rQ~~K~~L~n~vl~ 895 (1231)
+.|++||++|-| ..++.+...++.+...+.....+..++...+.
T Consensus 498 ~~Qr~GRArr~g----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 541 (699)
T 4gl2_A 498 MVQARGRARADE----STYVLVAHSGSGVIERETVNDFREKMMYKAIH 541 (699)
T ss_dssp HHHHHTTSCSSS----CEEEEEEESSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCC----ceEEEEEeCCchHHHHHHHHHHHHHHHHHHHH
Confidence 999999976554 45555667788777777777777777776664
No 14
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=3.1e-33 Score=337.25 Aligned_cols=346 Identities=13% Similarity=0.136 Sum_probs=249.7
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHH--cCCCe
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKW--YPSFH 477 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw--~p~lr 477 (1231)
.|+|||.+++.+++. +.++||+++||+|||++++.++......+ .+++|||||. .|+.||.++|.+| ++...
T Consensus 113 ~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~ 187 (510)
T 2oca_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY-EGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (510)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC-SSEEEEEESSHHHHHHHHHHHHHTTSSCGGG
T ss_pred CCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC-CCeEEEEECcHHHHHHHHHHHHHhhcCCccc
Confidence 799999999999865 36899999999999999987776655432 3599999996 7889999999999 56677
Q ss_pred EEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcCC
Q 044798 478 VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVE 557 (1231)
Q Consensus 478 V~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~~ 557 (1231)
+..+++...... . .....+|+|+||+.+..... .....
T Consensus 188 v~~~~~~~~~~~----------------------------------------~-~~~~~~I~i~T~~~l~~~~~-~~~~~ 225 (510)
T 2oca_A 188 IKKIGGGASKDD----------------------------------------K-YKNDAPVVVGTWQTVVKQPK-EWFSQ 225 (510)
T ss_dssp EEECGGGCCTTG----------------------------------------G-GCTTCSEEEEEHHHHTTSCG-GGGGG
T ss_pred eEEEecCCcccc----------------------------------------c-cccCCcEEEEeHHHHhhchh-hhhhc
Confidence 877775432100 0 12456899999998865432 22347
Q ss_pred ccEEEEeCCcccCCcchHHHHHHHhc-ccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCCCC
Q 044798 558 WGYAVLDEGHRIRNPNAEISLVCKQL-QTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYAN 636 (1231)
Q Consensus 558 wd~VILDEAH~IKN~~Sk~skalk~L-~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~~ 636 (1231)
|++||+||+|++.+. .....+..+ ...++++||||| .+...+++++..++.+..+.. +.. .
T Consensus 226 ~~liIiDE~H~~~~~--~~~~il~~~~~~~~~l~lSATp-~~~~~~~~~~~~~~~~~~~~~----------~~~-----~ 287 (510)
T 2oca_A 226 FGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSL-RDGKANIMQYVGMFGEIFKPV----------TTS-----K 287 (510)
T ss_dssp EEEEEEETGGGCCHH--HHHHHGGGCTTCCEEEEEESCG-GGCSSCHHHHHHHHCSEECCC----------CCC------
T ss_pred CCEEEEECCcCCCcc--cHHHHHHhcccCcEEEEEEeCC-CCCcccHHHhHHhhCCeEEee----------CHH-----H
Confidence 899999999999873 344555677 667889999999 566666777776655422110 000 0
Q ss_pred CChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchhHHHH
Q 044798 637 ASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGID 716 (1231)
Q Consensus 637 as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~i~ 716 (1231)
++ -...+++.....+.+.+.+...... .+ ..+. .
T Consensus 288 ------------------~~-----------~~~~l~~~~~~~~~~~~~~~~~~~~-------------~~--~~~~--~ 321 (510)
T 2oca_A 288 ------------------LM-----------EDGQVTELKINSIFLRYPDEFTTKL-------------KG--KTYQ--E 321 (510)
T ss_dssp -------------------------------------CCEEEEEEEECCHHHHHHH-------------TT--CCHH--H
T ss_pred ------------------Hh-----------hCCcCCCceEEEEeecCChHHhccc-------------cc--cchH--H
Confidence 00 0013566677777777776544110 00 0000 0
Q ss_pred HHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhc-CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCC
Q 044798 717 VMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQ-GHRVLLFAQTQQMLDILESFLIASGYEYRRMDGL 795 (1231)
Q Consensus 717 ~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~-g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGs 795 (1231)
.+..++.+ ..|...+.+++..+... +.++|||+. +..++.|...|...+.++..++|.
T Consensus 322 ~~~~~~~~--------------------~~~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~ 380 (510)
T 2oca_A 322 EIKIITGL--------------------SKRNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGE 380 (510)
T ss_dssp HHHHHHTC--------------------HHHHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSS
T ss_pred HHHHHhcc--------------------HHHHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECC
Confidence 11222221 24556677777766544 557777777 888888999999998899999999
Q ss_pred CCHHHHHHHHHHHhCCCCceEEEEec-cccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcc-cEEEEEEEeCC
Q 044798 796 TPVKQRMALIDEYNNSSDVFIFILTT-KVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQ-DVTVYRLITRG 873 (1231)
Q Consensus 796 ts~~eRq~iId~Fn~d~~i~VfLlST-kvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk-~V~VYRLit~g 873 (1231)
++..+|+.+++.|+++ .+.| |++| .++++|||++.++.||+++++||+..+.|++||++|.|+.+ .|+||.++...
T Consensus 381 ~~~~~r~~i~~~f~~g-~~~v-Lv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~~~ 458 (510)
T 2oca_A 381 VDTETRNIMKTLAENG-KGII-IVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKHGSKTIATVWDLIDDA 458 (510)
T ss_dssp TTHHHHHHHHHHHHHC-CSCE-EEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTTCCCCCCEEEEEEEEC
T ss_pred CCHHHHHHHHHHHhCC-CCCE-EEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccCCCCceEEEEEeecch
Confidence 9999999999999987 5565 5556 99999999999999999999999999999999999999997 69999999987
Q ss_pred CHHHHHH
Q 044798 874 TIEEKVY 880 (1231)
Q Consensus 874 TIEEkIy 880 (1231)
++.++++
T Consensus 459 ~~~~~~~ 465 (510)
T 2oca_A 459 GVKPKSA 465 (510)
T ss_dssp CBCCSSS
T ss_pred hhhhhhh
Confidence 7555443
No 15
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.98 E-value=1.2e-31 Score=329.90 Aligned_cols=350 Identities=13% Similarity=0.118 Sum_probs=214.9
Q ss_pred hhchHHHHHHHHHHHHHHcCC-CcEEEEeCCCchHHHHHHHHHHHHhhcC-------CCCcEEEEeC-CcchHHHH-HHH
Q 044798 400 NNLFDYQKVGVQWLWELHCQR-AGGIIGDEMGLGKTIQVLSFLGALHFSN-------MYKPSIVVCP-VTLLRQWK-REA 469 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~-~GgILADEMGLGKTIqaIA~L~~L~~s~-------~~kpvLIV~P-~sLl~QW~-~E~ 469 (1231)
..|+|||.++|.++++....+ .+++|+++||+|||++++.++..+...+ ..+++||||| ..|+.||. ++|
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 469999999999998766554 5589999999999999999988887766 6789999999 68889999 778
Q ss_pred HHHcCCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHH
Q 044798 470 EKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLL 549 (1231)
Q Consensus 470 ~kw~p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~ 549 (1231)
..|.+. +..+.+. ......+|+|+||+.+...
T Consensus 257 ~~~~~~--~~~~~~~----------------------------------------------~~~~~~~I~v~T~~~l~~~ 288 (590)
T 3h1t_A 257 TPFGDA--RHKIEGG----------------------------------------------KVVKSREIYFAIYQSIASD 288 (590)
T ss_dssp TTTCSS--EEECCC------------------------------------------------CCSSCSEEEEEGGGC---
T ss_pred Hhcchh--hhhhhcc----------------------------------------------CCCCCCcEEEEEhhhhccc
Confidence 776532 2222110 0123458999999999765
Q ss_pred H------hhhhcCCccEEEEeCCcccCCcc-hHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHH
Q 044798 550 G------EKLLDVEWGYAVLDEGHRIRNPN-AEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFE 622 (1231)
Q Consensus 550 ~------~~L~~~~wd~VILDEAH~IKN~~-Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~ 622 (1231)
. ..+....|++||+||||++.+.. +.....+..+...++++|||||..+...+++.++.-
T Consensus 289 ~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~il~~~~~~~~l~lTATP~~~~~~~~~~~f~~------------- 355 (590)
T 3h1t_A 289 ERRPGLYKEFPQDFFDLIIIDECHRGSARDNSNWREILEYFEPAFQIGMTATPLREDNRDTYRYFGN------------- 355 (590)
T ss_dssp ---CCGGGGSCTTSCSEEEESCCC---------CHHHHHHSTTSEEEEEESSCSCTTTHHHHHHSCS-------------
T ss_pred cccccccccCCCCccCEEEEECCccccccchHHHHHHHHhCCcceEEEeccccccccchhHHHHcCC-------------
Confidence 3 23445579999999999998763 344556667777889999999999887776665421
Q ss_pred HhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHH
Q 044798 623 AEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVE 702 (1231)
Q Consensus 623 ~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~ 702 (1231)
++..-. +.+.+.. ..+++.....+...........+...+... .
T Consensus 356 -----~~~~~~------------------~~~~i~~-----------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 399 (590)
T 3h1t_A 356 -----PIYTYS------------------LRQGIDD-----------GFLAPYRVHRVISEVDAAGWRPSKGDVDRF--G 399 (590)
T ss_dssp -----CSEEEC------------------HHHHHHH-----------TSSCCEEEEEEEETTCC----------------
T ss_pred -----ceEecC------------------HHHHhhC-----------CccCCcEEEEeeeeeecccccccccccccc--c
Confidence 110000 1111110 123333333333332211111110000000 0
Q ss_pred HHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHH---hcCCeEEEEeccHHHHHHHH
Q 044798 703 QILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWK---DQGHRVLLFAQTQQMLDILE 779 (1231)
Q Consensus 703 ~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~---~~g~KVLVFSQ~~~~LdiLe 779 (1231)
............+.. ... ...+...+.+.|..+. ..+.|+||||+++..++.|.
T Consensus 400 ~~~~~~~~~~~~~~~---~~~--------------------~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~ 456 (590)
T 3h1t_A 400 REIPDGEYQTKDFER---VIA--------------------LKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMR 456 (590)
T ss_dssp ---------CCSHHH---HHH--------------------HHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHH
T ss_pred cccccccCCHHHhhh---Hhc--------------------ChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHH
Confidence 000000000000000 000 0112222333332221 34679999999999999999
Q ss_pred HHHHHcCCc--------EEEEeCCCCHHHHHHHHHHHhCCC-CceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHH
Q 044798 780 SFLIASGYE--------YRRMDGLTPVKQRMALIDEYNNSS-DVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQ 850 (1231)
Q Consensus 780 ~~L~~~Gi~--------~~rIdGsts~~eRq~iId~Fn~d~-~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~Q 850 (1231)
..|...+.. +..++|.++. +|+.++++|+++. .+.++|+||+++++|||++.++.||+++++|++..++|
T Consensus 457 ~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q 535 (590)
T 3h1t_A 457 RALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQ 535 (590)
T ss_dssp HHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHH
T ss_pred HHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEEEecCCChHHHHH
Confidence 999876543 7889999863 7999999999864 47788999999999999999999999999999999999
Q ss_pred HHHhHHhhCC---cccEEEEEEE
Q 044798 851 ARERAWRIGQ---KQDVTVYRLI 870 (1231)
Q Consensus 851 AigRa~RiGQ---kk~V~VYRLi 870 (1231)
++||++|.|+ +..+.||.++
T Consensus 536 ~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 536 IVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp HHTTSCCCBGGGTBSCEEEEECS
T ss_pred HHhhhcccCccCCCCEEEEEecC
Confidence 9999999995 5668888876
No 16
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.97 E-value=3.3e-30 Score=298.02 Aligned_cols=322 Identities=13% Similarity=0.139 Sum_probs=224.6
Q ss_pred CcccChhhhh--------hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhc-CCCCcEEEEeCC-c
Q 044798 391 GLKIPESIFN--------NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS-NMYKPSIVVCPV-T 460 (1231)
Q Consensus 391 ~~~iP~~i~~--------~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s-~~~kpvLIV~P~-s 460 (1231)
.+.+|+.+.. .|+|||.+++.++ ..+.++|+.++||+|||++++..+...... ....++|||||. .
T Consensus 12 ~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~----~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~ 87 (391)
T 1xti_A 12 DFLLKPELLRAIVDCGFEHPSEVQHECIPQA----ILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRE 87 (391)
T ss_dssp GGCCCHHHHHHHHHHSCCSCCHHHHHHHHHH----TTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHH
T ss_pred hcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH----hcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHH
Confidence 3455666533 4899999999988 456789999999999999877666554332 234689999997 8
Q ss_pred chHHHHHHHHHHc---CCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCC
Q 044798 461 LLRQWKREAEKWY---PSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESG 537 (1231)
Q Consensus 461 Ll~QW~~E~~kw~---p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~ 537 (1231)
|+.||.+++.+|. |++++.++++...... ..........+
T Consensus 88 L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~-------------------------------------~~~~~~~~~~~ 130 (391)
T 1xti_A 88 LAFQISKEYERFSKYMPNVKVAVFFGGLSIKK-------------------------------------DEEVLKKNCPH 130 (391)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEECTTSCHHH-------------------------------------HHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHH-------------------------------------HHHHHhcCCCC
Confidence 8999999999986 4678888876543211 01111223468
Q ss_pred EEEeCHHHHHHHHhh--hhcCCccEEEEeCCcccCCcchH---HHHHHHhcc-cccEEEecccCccCChHHHHHhhhhhc
Q 044798 538 LLITTYEQLRLLGEK--LLDVEWGYAVLDEGHRIRNPNAE---ISLVCKQLQ-TVHRIIMTGAPIQNKLSELWSLFDFVF 611 (1231)
Q Consensus 538 VvItTYe~Lr~~~~~--L~~~~wd~VILDEAH~IKN~~Sk---~skalk~L~-t~~RllLTGTPiqNnl~EL~SLl~FL~ 611 (1231)
|+|+||+.+...... +....|++||+||||++.+.... +...+..+. ....++|||||-.+ +.++..
T Consensus 131 iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~-~~~~~~------ 203 (391)
T 1xti_A 131 IVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKE-IRPVCR------ 203 (391)
T ss_dssp EEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCST-HHHHHH------
T ss_pred EEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHH-HHHHHH------
Confidence 999999999775543 33457899999999999764221 222233332 45678999998543 111111
Q ss_pred CCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHH
Q 044798 612 PGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAV 691 (1231)
Q Consensus 612 P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~l 691 (1231)
..+..|........ ....+.......+.+
T Consensus 204 -----------~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~--------- 232 (391)
T 1xti_A 204 -----------KFMQDPMEIFVDDE-------------------------------TKLTLHGLQQYYVKL--------- 232 (391)
T ss_dssp -----------HHCSSCEEEECCCC-------------------------------CCCCCTTCEEEEEEC---------
T ss_pred -----------HHcCCCeEEEecCc-------------------------------cccCcccceEEEEEc---------
Confidence 00111110000000 000000011111111
Q ss_pred HHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEecc
Q 044798 692 YRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQT 771 (1231)
Q Consensus 692 Y~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~ 771 (1231)
....|...|.+++... .+.++||||++
T Consensus 233 ---------------------------------------------------~~~~~~~~l~~~l~~~--~~~~~lvf~~~ 259 (391)
T 1xti_A 233 ---------------------------------------------------KDNEKNRKLFDLLDVL--EFNQVVIFVKS 259 (391)
T ss_dssp ---------------------------------------------------CGGGHHHHHHHHHHHS--CCSEEEEECSC
T ss_pred ---------------------------------------------------CchhHHHHHHHHHHhc--CCCcEEEEeCc
Confidence 1234556666666654 56799999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHH
Q 044798 772 QQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQA 851 (1231)
Q Consensus 772 ~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QA 851 (1231)
+..++.+...|...|+.+..++|.++..+|..+++.|+++. +. +|++|+++++|+|+++++.||+||+||++..+.|+
T Consensus 260 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~~-vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr 337 (391)
T 1xti_A 260 VQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQ-RR-ILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHR 337 (391)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTC-CS-EEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC-Cc-EEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHh
Confidence 99999999999999999999999999999999999999874 44 57899999999999999999999999999999999
Q ss_pred HHhHHhhCCcccEEE
Q 044798 852 RERAWRIGQKQDVTV 866 (1231)
Q Consensus 852 igRa~RiGQkk~V~V 866 (1231)
+||++|.|+...+++
T Consensus 338 ~GR~~R~g~~g~~~~ 352 (391)
T 1xti_A 338 VARAGRFGTKGLAIT 352 (391)
T ss_dssp HCBCSSSCCCCEEEE
T ss_pred cccccCCCCceEEEE
Confidence 999999998766554
No 17
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=7.5e-31 Score=299.64 Aligned_cols=312 Identities=18% Similarity=0.209 Sum_probs=221.6
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCC--Ce
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPS--FH 477 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~--lr 477 (1231)
.|+|||.+++.+++. .+.++|+..+||+|||++++..+..+.......++|||||. .++.||.+++.+|++. +.
T Consensus 28 ~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 104 (367)
T 1hv8_A 28 KPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLK 104 (367)
T ss_dssp SCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCce
Confidence 579999999998854 33688999999999999988777766555556789999996 7889999999999854 45
Q ss_pred EEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--hhc
Q 044798 478 VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLD 555 (1231)
Q Consensus 478 V~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~--L~~ 555 (1231)
+..+++...... .... + ...+|+|+||+.+...... +..
T Consensus 105 v~~~~~~~~~~~-------------------------------------~~~~-~-~~~~iiv~T~~~l~~~~~~~~~~~ 145 (367)
T 1hv8_A 105 IAKIYGGKAIYP-------------------------------------QIKA-L-KNANIVVGTPGRILDHINRGTLNL 145 (367)
T ss_dssp EEEECTTSCHHH-------------------------------------HHHH-H-HTCSEEEECHHHHHHHHHTTCSCT
T ss_pred EEEEECCcchHH-------------------------------------HHhh-c-CCCCEEEecHHHHHHHHHcCCccc
Confidence 555554332110 0011 1 2468999999999776543 334
Q ss_pred CCccEEEEeCCcccCCcc--hHHHHHHHhc-ccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccC
Q 044798 556 VEWGYAVLDEGHRIRNPN--AEISLVCKQL-QTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVG 632 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN~~--Sk~skalk~L-~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g 632 (1231)
..|++||+||||.+.+.. ..+...+..+ ...+.++|||||..+....+.. + +..+..
T Consensus 146 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~---~---------------~~~~~~-- 205 (367)
T 1hv8_A 146 KNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKK---Y---------------MGDYSF-- 205 (367)
T ss_dssp TSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHH---H---------------CCSEEE--
T ss_pred ccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHH---H---------------cCCCeE--
Confidence 578999999999997655 2334444444 3456688999995421111111 0 000000
Q ss_pred CCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchh
Q 044798 633 GYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSL 712 (1231)
Q Consensus 633 ~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l 712 (1231)
+....+..... .++..
T Consensus 206 -----------------------------------~~~~~~~~~~~-~~~~~---------------------------- 221 (367)
T 1hv8_A 206 -----------------------------------IKAKINANIEQ-SYVEV---------------------------- 221 (367)
T ss_dssp -----------------------------------EECCSSSSSEE-EEEEC----------------------------
T ss_pred -----------------------------------EEecCCCCceE-EEEEe----------------------------
Confidence 00000000011 11111
Q ss_pred HHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEE
Q 044798 713 YGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRM 792 (1231)
Q Consensus 713 ~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rI 792 (1231)
....|+..|.+++. ..+.++||||++...++.+...|...|+.+..+
T Consensus 222 ------------------------------~~~~~~~~l~~~l~---~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~ 268 (367)
T 1hv8_A 222 ------------------------------NENERFEALCRLLK---NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAI 268 (367)
T ss_dssp ------------------------------CGGGHHHHHHHHHC---STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred ------------------------------ChHHHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEe
Confidence 11234444555443 567799999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeC
Q 044798 793 DGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITR 872 (1231)
Q Consensus 793 dGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~ 872 (1231)
+|.++..+|..+++.|+++ .+. +|++|+++++|+|++.++.||+|++|||+..+.|++||++|.|+...+++ |+..
T Consensus 269 ~~~~~~~~r~~~~~~f~~~-~~~-vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~--~~~~ 344 (367)
T 1hv8_A 269 HGDLSQSQREKVIRLFKQK-KIR-ILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAIS--IINR 344 (367)
T ss_dssp CSSSCHHHHHHHHHHHHTT-SSS-EEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEE--EECT
T ss_pred eCCCCHHHHHHHHHHHHcC-CCe-EEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEE--EEcH
Confidence 9999999999999999987 444 47789999999999999999999999999999999999999998776544 4555
Q ss_pred CCH
Q 044798 873 GTI 875 (1231)
Q Consensus 873 gTI 875 (1231)
...
T Consensus 345 ~~~ 347 (367)
T 1hv8_A 345 REY 347 (367)
T ss_dssp TSH
T ss_pred HHH
Confidence 533
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=6.8e-30 Score=298.33 Aligned_cols=329 Identities=14% Similarity=0.142 Sum_probs=228.7
Q ss_pred cCCcccChhhhh--------hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhh-cCCCCcEEEEeCC
Q 044798 389 EGGLKIPESIFN--------NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF-SNMYKPSIVVCPV 459 (1231)
Q Consensus 389 ~~~~~iP~~i~~--------~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~-s~~~kpvLIV~P~ 459 (1231)
+..+.+++.+.. .|+|||.+++.+++ .+.++|+.++||+|||++++..+..... .....++|||||.
T Consensus 39 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~----~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt 114 (410)
T 2j0s_A 39 FDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQII----KGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPT 114 (410)
T ss_dssp GGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSS
T ss_pred HhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCc
Confidence 445667777643 47899999999884 4678999999999999988766655433 2345789999996
Q ss_pred -cchHHHHHHHHHHcCC--CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCC
Q 044798 460 -TLLRQWKREAEKWYPS--FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSES 536 (1231)
Q Consensus 460 -sLl~QW~~E~~kw~p~--lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~ 536 (1231)
.|+.||.+++.+|... +.+..+++...... . ...+....
T Consensus 115 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-------------------------------------~-~~~~~~~~ 156 (410)
T 2j0s_A 115 RELAVQIQKGLLALGDYMNVQCHACIGGTNVGE-------------------------------------D-IRKLDYGQ 156 (410)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHH-------------------------------------H-HHHHHHCC
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEEECCCCHHH-------------------------------------H-HHHhhcCC
Confidence 7899999999998754 45555554332110 0 11122456
Q ss_pred CEEEeCHHHHHHHHhh--hhcCCccEEEEeCCcccCCcc--hHHHHHHHhc-ccccEEEecccCccCChHHHHHhhhhhc
Q 044798 537 GLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHRIRNPN--AEISLVCKQL-QTVHRIIMTGAPIQNKLSELWSLFDFVF 611 (1231)
Q Consensus 537 ~VvItTYe~Lr~~~~~--L~~~~wd~VILDEAH~IKN~~--Sk~skalk~L-~t~~RllLTGTPiqNnl~EL~SLl~FL~ 611 (1231)
+|+|+||+.+...... +....|++||+||||++.+.+ ..+...+..+ .....++|||||-. ++..++...
T Consensus 157 ~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~~~~- 231 (410)
T 2j0s_A 157 HVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPH----EILEMTNKF- 231 (410)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCH----HHHTTGGGT-
T ss_pred CEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCH----HHHHHHHHH-
Confidence 8999999999766543 444568999999999987755 2334444444 34567889999843 222221111
Q ss_pred CCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHH
Q 044798 612 PGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAV 691 (1231)
Q Consensus 612 P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~l 691 (1231)
+..|+..... .....++......+.+.-
T Consensus 232 -------------~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~------- 259 (410)
T 2j0s_A 232 -------------MTDPIRILVK--------------------------------RDELTLEGIKQFFVAVER------- 259 (410)
T ss_dssp -------------CSSCEEECCC--------------------------------GGGCSCTTEEEEEEEESS-------
T ss_pred -------------cCCCEEEEec--------------------------------CccccCCCceEEEEEeCc-------
Confidence 1111110000 000011111122222211
Q ss_pred HHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEecc
Q 044798 692 YRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQT 771 (1231)
Q Consensus 692 Y~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~ 771 (1231)
...|+..|.+++.... +.++||||++
T Consensus 260 ----------------------------------------------------~~~k~~~l~~~~~~~~--~~~~lVf~~~ 285 (410)
T 2j0s_A 260 ----------------------------------------------------EEWKFDTLCDLYDTLT--ITQAVIFCNT 285 (410)
T ss_dssp ----------------------------------------------------TTHHHHHHHHHHHHHT--SSEEEEECSS
T ss_pred ----------------------------------------------------HHhHHHHHHHHHHhcC--CCcEEEEEcC
Confidence 1224555666665543 4599999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHH
Q 044798 772 QQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQA 851 (1231)
Q Consensus 772 ~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QA 851 (1231)
+..++.+...|...|+.+..++|.++..+|..+++.|+++. +. +|++|+++++|||++.++.||+||+||++..+.|+
T Consensus 286 ~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~~-vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr 363 (410)
T 2j0s_A 286 KRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGA-SR-VLISTDVWARGLDVPQVSLIINYDLPNNRELYIHR 363 (410)
T ss_dssp HHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTS-SC-EEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCC-CC-EEEECChhhCcCCcccCCEEEEECCCCCHHHHHHh
Confidence 99999999999999999999999999999999999999874 44 57899999999999999999999999999999999
Q ss_pred HHhHHhhCCcccEEEEEEEeCCC
Q 044798 852 RERAWRIGQKQDVTVYRLITRGT 874 (1231)
Q Consensus 852 igRa~RiGQkk~V~VYRLit~gT 874 (1231)
+||++|.|++.. +|.|+....
T Consensus 364 ~GR~gR~g~~g~--~~~~~~~~~ 384 (410)
T 2j0s_A 364 IGRSGRYGRKGV--AINFVKNDD 384 (410)
T ss_dssp HTTSSGGGCCEE--EEEEEEGGG
T ss_pred cccccCCCCceE--EEEEecHHH
Confidence 999999997654 445566543
No 19
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.97 E-value=1.5e-31 Score=302.42 Aligned_cols=205 Identities=16% Similarity=0.154 Sum_probs=157.5
Q ss_pred CCCceEEEEEecCCHHHHHHHHHHHh--hHHHHHHhhcCc--------chhHHHHHHHHHhCChhhhhhhh-hcCCC---
Q 044798 672 LPKKTEHVLFCSLTEEQRAVYRAFLA--SSEVEQILDGSR--------NSLYGIDVMRKICNHPDLLEREQ-SCQIP--- 737 (1231)
Q Consensus 672 LP~K~e~vv~~~Lt~~Qr~lY~~~l~--s~~~~~il~~~~--------~~l~~i~~LRkicnHPdLl~~~~-~~~~~--- 737 (1231)
-|++.|++++|.||+.|+++|+.++. +..+...+.+.. .....++.||++||||+|+.... .....
T Consensus 20 ~~~~~E~~Lpv~Ms~~QK~lY~~il~~~~~~I~~~~~~~~~~~~~~~~sl~nli~qLRkicnHP~L~~d~~~p~~~~~~~ 99 (328)
T 3hgt_A 20 GNTSGDYWLPTTMSLYQKELTDQIVSLHYSDILRYFETSHYKEDVILESMKTMCLNGSLVATHPYLLIDHYMPKSLITRD 99 (328)
T ss_dssp --CCSEEEEEECCCHHHHHHHHHHHHHTHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHCGGGTCCTTCCSCSCSTT
T ss_pred CCCCceEEEecCCCHHHHHHHHHHHHhhHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHcCChhhhccccCCccccccc
Confidence 38999999999999999999999984 345555555443 12355788999999999984211 00000
Q ss_pred -CCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceE
Q 044798 738 -DYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFI 816 (1231)
Q Consensus 738 -d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~V 816 (1231)
.....+.|+|+.+|..+|..+++.|+|||||||++.+||+||.+|..+|++|+|+||++... +++. .+.++++
T Consensus 100 ~~~~l~~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~-~~k~-----~~~~~~i 173 (328)
T 3hgt_A 100 VPAHLAENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS-AAAA-----NDFSCTV 173 (328)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC-------------CCSEEE
T ss_pred hhhHHHHcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh-hhhc-----ccCCceE
Confidence 01113469999999999999999999999999999999999999999999999999996543 3222 1346788
Q ss_pred EEEeccccccccC-----CCCCCEEEEcCCCCCcchH-HHHHHhHHhh--CCcccEEEEEEEeCCCHHHHHHHHH
Q 044798 817 FILTTKVGGLGTN-----LTGANRVIIFDPDWNPSTD-VQARERAWRI--GQKQDVTVYRLITRGTIEEKVYHRQ 883 (1231)
Q Consensus 817 fLlSTkvGg~GLN-----Lt~AnrVIi~Dp~WNPs~d-~QAigRa~Ri--GQkk~V~VYRLit~gTIEEkIy~rQ 883 (1231)
||+ |.+||.|+| |++|++||+||++|||..+ +||+.|+||+ ||+++|.||||++.|||||.++..-
T Consensus 174 ~Ll-tsag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l~~~ 247 (328)
T 3hgt_A 174 HLF-SSEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRLFFG 247 (328)
T ss_dssp EEE-ESSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHHHHH
T ss_pred EEE-ECCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHHHcc
Confidence 887 558888886 8999999999999999998 9999999999 7899999999999999999998763
No 20
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.97 E-value=6.4e-30 Score=297.24 Aligned_cols=326 Identities=14% Similarity=0.144 Sum_probs=223.9
Q ss_pred CCcccChhhh--------hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcC-CCCcEEEEeCC-
Q 044798 390 GGLKIPESIF--------NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN-MYKPSIVVCPV- 459 (1231)
Q Consensus 390 ~~~~iP~~i~--------~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~-~~kpvLIV~P~- 459 (1231)
..+.+++.+. ..|+|||.+++.++.. +.++|+..+||+|||++++..+....... ...++|||||.
T Consensus 24 ~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 99 (400)
T 1s2m_A 24 EDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTR 99 (400)
T ss_dssp GGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred hhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCH
Confidence 3445566553 3489999999998854 56799999999999998776665543322 34589999996
Q ss_pred cchHHHHHHHHHHcCC--CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCC
Q 044798 460 TLLRQWKREAEKWYPS--FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESG 537 (1231)
Q Consensus 460 sLl~QW~~E~~kw~p~--lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~ 537 (1231)
.|+.||.+++.++++. ..+..+++...... .. .......+
T Consensus 100 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-------------------------------------~~-~~~~~~~~ 141 (400)
T 1s2m_A 100 ELALQTSQVVRTLGKHCGISCMVTTGGTNLRD-------------------------------------DI-LRLNETVH 141 (400)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECSSSCHHH-------------------------------------HH-HHTTSCCS
T ss_pred HHHHHHHHHHHHHhcccCceEEEEeCCcchHH-------------------------------------HH-HHhcCCCC
Confidence 8889999999999864 56666655432110 00 11234568
Q ss_pred EEEeCHHHHHHHHhh--hhcCCccEEEEeCCcccCCcchH--HHHHHHhc-ccccEEEecccCccCChHHHHHhhhhhcC
Q 044798 538 LLITTYEQLRLLGEK--LLDVEWGYAVLDEGHRIRNPNAE--ISLVCKQL-QTVHRIIMTGAPIQNKLSELWSLFDFVFP 612 (1231)
Q Consensus 538 VvItTYe~Lr~~~~~--L~~~~wd~VILDEAH~IKN~~Sk--~skalk~L-~t~~RllLTGTPiqNnl~EL~SLl~FL~P 612 (1231)
|+|+||+.+...... +....+++||+||||++.+..-. +...+..+ .....++||||+-.+ +.++ +
T Consensus 142 Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~-~~~~---~----- 212 (400)
T 1s2m_A 142 ILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLT-VKEF---M----- 212 (400)
T ss_dssp EEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHH-HHHH---H-----
T ss_pred EEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHH-HHHH---H-----
Confidence 999999999765533 33456899999999998765321 22222233 345678899997321 1111 0
Q ss_pred CCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHH
Q 044798 613 GKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVY 692 (1231)
Q Consensus 613 ~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY 692 (1231)
...+..|........ ...+.......++
T Consensus 213 ---------~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~~---------- 240 (400)
T 1s2m_A 213 ---------VKHLHKPYEINLMEE---------------------------------LTLKGITQYYAFV---------- 240 (400)
T ss_dssp ---------HHHCSSCEEESCCSS---------------------------------CBCTTEEEEEEEC----------
T ss_pred ---------HHHcCCCeEEEeccc---------------------------------cccCCceeEEEEe----------
Confidence 000111110000000 0001111111111
Q ss_pred HHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccH
Q 044798 693 RAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQ 772 (1231)
Q Consensus 693 ~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~ 772 (1231)
....|+..+..++... .+.++||||+++
T Consensus 241 --------------------------------------------------~~~~k~~~l~~~~~~~--~~~~~lVf~~~~ 268 (400)
T 1s2m_A 241 --------------------------------------------------EERQKLHCLNTLFSKL--QINQAIIFCNST 268 (400)
T ss_dssp --------------------------------------------------CGGGHHHHHHHHHHHS--CCSEEEEECSSH
T ss_pred --------------------------------------------------chhhHHHHHHHHHhhc--CCCcEEEEEecH
Confidence 1234556666666643 467999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHH
Q 044798 773 QMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQAR 852 (1231)
Q Consensus 773 ~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAi 852 (1231)
..++.+...|...|+.+..++|.++..+|..+++.|+++. +. +|++|+++++|+|+++++.||+||++||+..+.|++
T Consensus 269 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~ 346 (400)
T 1s2m_A 269 NRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGK-VR-TLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRI 346 (400)
T ss_dssp HHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTS-SS-EEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCC-Cc-EEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhc
Confidence 9999999999999999999999999999999999999873 44 478999999999999999999999999999999999
Q ss_pred HhHHhhCCcccEEEEEEEeCCC
Q 044798 853 ERAWRIGQKQDVTVYRLITRGT 874 (1231)
Q Consensus 853 gRa~RiGQkk~V~VYRLit~gT 874 (1231)
||++|.|+... +|.|+..+.
T Consensus 347 GR~gR~g~~g~--~~~l~~~~~ 366 (400)
T 1s2m_A 347 GRSGRFGHLGL--AINLINWND 366 (400)
T ss_dssp CBSSCTTCCEE--EEEEECGGG
T ss_pred chhcCCCCCce--EEEEeccch
Confidence 99999997654 455666653
No 21
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=295.34 Aligned_cols=329 Identities=14% Similarity=0.143 Sum_probs=215.1
Q ss_pred cCCcccChhhhh--------hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhh-cCCCCcEEEEeCC
Q 044798 389 EGGLKIPESIFN--------NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF-SNMYKPSIVVCPV 459 (1231)
Q Consensus 389 ~~~~~iP~~i~~--------~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~-s~~~kpvLIV~P~ 459 (1231)
...+.+++.+.. .++|||.+++.++. .+..+|+..+||+|||++++..+..... .....++|||||.
T Consensus 42 f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 117 (414)
T 3eiq_A 42 FDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCI----KGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPT 117 (414)
T ss_dssp GGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHH----TTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred HhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHh----CCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeCh
Confidence 344566666643 57999999998874 4677999999999999997666654433 2345789999996
Q ss_pred -cchHHHHHHHHHHcC--CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCC
Q 044798 460 -TLLRQWKREAEKWYP--SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSES 536 (1231)
Q Consensus 460 -sLl~QW~~E~~kw~p--~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~ 536 (1231)
.|+.||.+++.++.. +..+..+.+.... ............
T Consensus 118 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~~ 160 (414)
T 3eiq_A 118 RELAQQIQKVVMALGDYMGASCHACIGGTNV-------------------------------------RAEVQKLQMEAP 160 (414)
T ss_dssp HHHHHHHHHHHHHHGGGSCCCEEECCCCTTH-------------------------------------HHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEECCcch-------------------------------------HHHHHHHhcCCC
Confidence 788999999999863 3444444433211 011122223557
Q ss_pred CEEEeCHHHHHHHHhh--hhcCCccEEEEeCCcccCCcc--hHHHHHHHhcc-cccEEEecccCccCChHHHHHhhhhhc
Q 044798 537 GLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHRIRNPN--AEISLVCKQLQ-TVHRIIMTGAPIQNKLSELWSLFDFVF 611 (1231)
Q Consensus 537 ~VvItTYe~Lr~~~~~--L~~~~wd~VILDEAH~IKN~~--Sk~skalk~L~-t~~RllLTGTPiqNnl~EL~SLl~FL~ 611 (1231)
+|+|+||+.+...... +....+++||+||||++.+.+ ..+...+..+. ....++|||||-.+ +..++...
T Consensus 161 ~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~----~~~~~~~~- 235 (414)
T 3eiq_A 161 HIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSD----VLEVTKKF- 235 (414)
T ss_dssp SEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHH----HHHHHTTT-
T ss_pred CEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHH----HHHHHHHH-
Confidence 8999999998765543 344568999999999986443 44555555663 44568899998421 11111110
Q ss_pred CCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHH
Q 044798 612 PGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAV 691 (1231)
Q Consensus 612 P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~l 691 (1231)
+..|+........ ..++......+.
T Consensus 236 -------------~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~---------- 260 (414)
T 3eiq_A 236 -------------MRDPIRILVKKEE--------------------------------LTLEGIRQFYIN---------- 260 (414)
T ss_dssp -------------CSSCEEECCCCCC--------------------------------CCTTSCCEEEEE----------
T ss_pred -------------cCCCEEEEecCCc--------------------------------cCCCCceEEEEE----------
Confidence 0011000000000 000000000000
Q ss_pred HHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEecc
Q 044798 692 YRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQT 771 (1231)
Q Consensus 692 Y~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~ 771 (1231)
......|+..+..++... .+.++||||++
T Consensus 261 -------------------------------------------------~~~~~~~~~~l~~~~~~~--~~~~~lvf~~~ 289 (414)
T 3eiq_A 261 -------------------------------------------------VEREEWKLDTLCDLYETL--TITQAVIFINT 289 (414)
T ss_dssp -------------------------------------------------CSSSTTHHHHHHHHHHSS--CCSSCEEECSC
T ss_pred -------------------------------------------------eChHHhHHHHHHHHHHhC--CCCcEEEEeCC
Confidence 001234677777777654 35699999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHH
Q 044798 772 QQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQA 851 (1231)
Q Consensus 772 ~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QA 851 (1231)
+..++.+...|...|+.+..++|.++..+|..+++.|+++. + -+|++|+++++|||+++++.||+||++||+..+.|+
T Consensus 290 ~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~-~-~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr 367 (414)
T 3eiq_A 290 RRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGS-S-RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHR 367 (414)
T ss_dssp HHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC-----CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCC-C-cEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhh
Confidence 99999999999999999999999999999999999999874 4 458899999999999999999999999999999999
Q ss_pred HHhHHhhCCcccEEEEEEEeCC
Q 044798 852 RERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 852 igRa~RiGQkk~V~VYRLit~g 873 (1231)
+||++|.|+... +|.|++..
T Consensus 368 ~GR~gR~g~~g~--~~~~~~~~ 387 (414)
T 3eiq_A 368 IGRGGRFGRKGV--AINMVTEE 387 (414)
T ss_dssp SCCC-------C--EEEEECST
T ss_pred cCcccCCCCCce--EEEEEcHH
Confidence 999999997654 45566665
No 22
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.97 E-value=7.3e-29 Score=294.42 Aligned_cols=326 Identities=16% Similarity=0.190 Sum_probs=227.1
Q ss_pred cccccCCcccChhhh--------hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHH-HhhcC-----CC
Q 044798 385 FVTLEGGLKIPESIF--------NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA-LHFSN-----MY 450 (1231)
Q Consensus 385 ~~~~~~~~~iP~~i~--------~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~-L~~s~-----~~ 450 (1231)
.+..+..+.+++.+. ..++|+|..++.++ ..+...|+..+||+|||++++..+.. +.... ..
T Consensus 54 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i----~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~ 129 (434)
T 2db3_A 54 PIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVI----SSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGR 129 (434)
T ss_dssp CCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTC
T ss_pred CcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHH----hcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCC
Confidence 344455566777764 34789999999887 46788999999999999986655543 33322 24
Q ss_pred CcEEEEeCC-cchHHHHHHHHHHcC--CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHH
Q 044798 451 KPSIVVCPV-TLLRQWKREAEKWYP--SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLL 527 (1231)
Q Consensus 451 kpvLIV~P~-sLl~QW~~E~~kw~p--~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ 527 (1231)
..+|||||. .|+.||.+++.++.. .+++.+++|......
T Consensus 130 ~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~-------------------------------------- 171 (434)
T 2db3_A 130 PQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRH-------------------------------------- 171 (434)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHH--------------------------------------
T ss_pred ccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHH--------------------------------------
Confidence 589999996 799999999999974 356666665432110
Q ss_pred HHhhhcCCCCEEEeCHHHHHHHHhh--hhcCCccEEEEeCCcccCCcc--hHHHHHHHhc---ccccEEEecccCccCCh
Q 044798 528 INRVLRSESGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHRIRNPN--AEISLVCKQL---QTVHRIIMTGAPIQNKL 600 (1231)
Q Consensus 528 i~~~~~~~~~VvItTYe~Lr~~~~~--L~~~~wd~VILDEAH~IKN~~--Sk~skalk~L---~t~~RllLTGTPiqNnl 600 (1231)
....+..+.+|+|+||+.+...... +....+++|||||||++.+.+ ..+...+..+ .....+++|||+-.
T Consensus 172 ~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~--- 248 (434)
T 2db3_A 172 QNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPE--- 248 (434)
T ss_dssp HHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCH---
T ss_pred HHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCH---
Confidence 1112335679999999999776543 334578999999999997754 3344455443 33456889999732
Q ss_pred HHHHHhhhhhcCCCCCChhHHHHhhccccc--cCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEE
Q 044798 601 SELWSLFDFVFPGKLGVLPVFEAEFAVPIT--VGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEH 678 (1231)
Q Consensus 601 ~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~--~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~ 678 (1231)
++..+..... ..|+. .+.. ....+.....
T Consensus 249 -~~~~~~~~~l--------------~~~~~i~~~~~----------------------------------~~~~~~i~~~ 279 (434)
T 2db3_A 249 -EIQRMAGEFL--------------KNYVFVAIGIV----------------------------------GGACSDVKQT 279 (434)
T ss_dssp -HHHHHHHTTC--------------SSCEEEEESST----------------------------------TCCCTTEEEE
T ss_pred -HHHHHHHHhc--------------cCCEEEEeccc----------------------------------cccccccceE
Confidence 2222111100 00000 0000 0000111111
Q ss_pred EEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHH
Q 044798 679 VLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVW 758 (1231)
Q Consensus 679 vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~ 758 (1231)
++.+. ...|...|.++|..
T Consensus 280 ~~~~~------------------------------------------------------------~~~k~~~l~~~l~~- 298 (434)
T 2db3_A 280 IYEVN------------------------------------------------------------KYAKRSKLIEILSE- 298 (434)
T ss_dssp EEECC------------------------------------------------------------GGGHHHHHHHHHHH-
T ss_pred EEEeC------------------------------------------------------------cHHHHHHHHHHHHh-
Confidence 11111 12355556666654
Q ss_pred HhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEE
Q 044798 759 KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVII 838 (1231)
Q Consensus 759 ~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi 838 (1231)
.+.++||||+++..++.|..+|...|+.+..+||++++.+|..+++.|+++ .+. +|++|+++++|||++++++||+
T Consensus 299 --~~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g-~~~-vLvaT~v~~rGlDi~~v~~VI~ 374 (434)
T 2db3_A 299 --QADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG-SMK-VLIATSVASRGLDIKNIKHVIN 374 (434)
T ss_dssp --CCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTS-SCS-EEEECGGGTSSCCCTTCCEEEE
T ss_pred --CCCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcC-CCc-EEEEchhhhCCCCcccCCEEEE
Confidence 344699999999999999999999999999999999999999999999987 444 4789999999999999999999
Q ss_pred cCCCCCcchHHHHHHhHHhhCCcccEEEEEEEe
Q 044798 839 FDPDWNPSTDVQARERAWRIGQKQDVTVYRLIT 871 (1231)
Q Consensus 839 ~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit 871 (1231)
||+||++..|.||+||++|.|+...+++ |+.
T Consensus 375 ~d~p~~~~~y~qriGR~gR~g~~G~a~~--~~~ 405 (434)
T 2db3_A 375 YDMPSKIDDYVHRIGRTGRVGNNGRATS--FFD 405 (434)
T ss_dssp SSCCSSHHHHHHHHTTSSCTTCCEEEEE--EEC
T ss_pred ECCCCCHHHHHHHhcccccCCCCCEEEE--EEe
Confidence 9999999999999999999998765544 455
No 23
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.96 E-value=1.5e-29 Score=286.00 Aligned_cols=310 Identities=19% Similarity=0.202 Sum_probs=212.3
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCC--Ce
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPS--FH 477 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~--lr 477 (1231)
.|+|||.+++.++. .+..+++.++||+|||++++..+... ..++|||||. .|+.||.+++.+|.+. .+
T Consensus 16 ~l~~~Q~~~i~~i~----~~~~~lv~~~TGsGKT~~~~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 86 (337)
T 2z0m_A 16 NFTEVQSKTIPLML----QGKNVVVRAKTGSGKTAAYAIPILEL-----GMKSLVVTPTRELTRQVASHIRDIGRYMDTK 86 (337)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHH-----TCCEEEECSSHHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCHHHHHHHHHHh----cCCCEEEEcCCCCcHHHHHHHHHHhh-----cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCc
Confidence 58999999999884 56789999999999999877665542 4689999996 8889999999998753 56
Q ss_pred EEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--hhc
Q 044798 478 VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLD 555 (1231)
Q Consensus 478 V~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~--L~~ 555 (1231)
+..+++...... .... + ...+|+|+||+.+...... +..
T Consensus 87 ~~~~~~~~~~~~-------------------------------------~~~~-~-~~~~i~v~T~~~l~~~~~~~~~~~ 127 (337)
T 2z0m_A 87 VAEVYGGMPYKA-------------------------------------QINR-V-RNADIVVATPGRLLDLWSKGVIDL 127 (337)
T ss_dssp EEEECTTSCHHH-------------------------------------HHHH-H-TTCSEEEECHHHHHHHHHTTSCCG
T ss_pred EEEEECCcchHH-------------------------------------HHhh-c-CCCCEEEECHHHHHHHHHcCCcch
Confidence 666665432110 0011 1 2368999999999776542 334
Q ss_pred CCccEEEEeCCcccCCcc--hHHHHHHHhcccccE-EEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccC
Q 044798 556 VEWGYAVLDEGHRIRNPN--AEISLVCKQLQTVHR-IIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVG 632 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN~~--Sk~skalk~L~t~~R-llLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g 632 (1231)
..|++||+||||++.+.. ..+...+..+....+ +++||||-......+. .|+ ..+....
T Consensus 128 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~---~~~---------------~~~~~~~ 189 (337)
T 2z0m_A 128 SSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVK---DFI---------------TNYEEIE 189 (337)
T ss_dssp GGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH---HHS---------------CSCEEEE
T ss_pred hhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHH---Hhc---------------CCceeee
Confidence 578999999999986543 334444555554444 5679999432111111 010 0000000
Q ss_pred CCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchh
Q 044798 633 GYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSL 712 (1231)
Q Consensus 633 ~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l 712 (1231)
. ...++......+.+... ..
T Consensus 190 ~-----------------------------------~~~~~~~~~~~~~~~~~--~~----------------------- 209 (337)
T 2z0m_A 190 A-----------------------------------CIGLANVEHKFVHVKDD--WR----------------------- 209 (337)
T ss_dssp C-----------------------------------SGGGGGEEEEEEECSSS--SH-----------------------
T ss_pred c-----------------------------------ccccCCceEEEEEeChH--HH-----------------------
Confidence 0 00001111111111110 00
Q ss_pred HHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEE
Q 044798 713 YGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRM 792 (1231)
Q Consensus 713 ~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rI 792 (1231)
.....+. ...+.++||||+++..++.+...|. .+..+
T Consensus 210 -------------------------------------~~~~~~~--~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~ 246 (337)
T 2z0m_A 210 -------------------------------------SKVQALR--ENKDKGVIVFVRTRNRVAKLVRLFD----NAIEL 246 (337)
T ss_dssp -------------------------------------HHHHHHH--TCCCSSEEEECSCHHHHHHHHTTCT----TEEEE
T ss_pred -------------------------------------HHHHHHH--hCCCCcEEEEEcCHHHHHHHHHHhh----hhhhh
Confidence 0011111 1346799999999999999998886 67899
Q ss_pred eCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeC
Q 044798 793 DGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITR 872 (1231)
Q Consensus 793 dGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~ 872 (1231)
+|.++..+|..+++.|+++. +. +|++|+++++|+|++.++.||+|++||++..+.|++||++|.|+...+.+|.. .+
T Consensus 247 ~~~~~~~~r~~~~~~f~~~~-~~-vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~ 323 (337)
T 2z0m_A 247 RGDLPQSVRNRNIDAFREGE-YD-MLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGEAITFIL-NE 323 (337)
T ss_dssp CTTSCHHHHHHHHHHHHTTS-CS-EEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEEES-SC
T ss_pred cCCCCHHHHHHHHHHHHcCC-Cc-EEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCceEEEEEe-Cc
Confidence 99999999999999999874 44 47789999999999999999999999999999999999999999888888766 55
Q ss_pred CCHHHHHHHH
Q 044798 873 GTIEEKVYHR 882 (1231)
Q Consensus 873 gTIEEkIy~r 882 (1231)
..+.+.|.+.
T Consensus 324 ~~~~~~i~~~ 333 (337)
T 2z0m_A 324 YWLEKEVKKV 333 (337)
T ss_dssp HHHHHHHC--
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 24
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.96 E-value=1.5e-28 Score=283.36 Aligned_cols=321 Identities=16% Similarity=0.171 Sum_probs=217.7
Q ss_pred cCCcccChhhh--------hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHh-hcCCCCcEEEEeCC
Q 044798 389 EGGLKIPESIF--------NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH-FSNMYKPSIVVCPV 459 (1231)
Q Consensus 389 ~~~~~iP~~i~--------~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~-~s~~~kpvLIV~P~ 459 (1231)
+..+.+|+.+. ..|+|||.+++.+++. ..+.++|+..+||+|||++++..+.... .....+++|||||.
T Consensus 7 f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~--~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~ 84 (395)
T 3pey_A 7 FDELGLAPELLKGIYAMKFQKPSKIQERALPLLLH--NPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPS 84 (395)
T ss_dssp STTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHC--SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred HhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHc--CCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCC
Confidence 34455666664 3579999999998844 2337899999999999998776665543 23345689999996
Q ss_pred -cchHHHHHHHHHHcC--CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCC
Q 044798 460 -TLLRQWKREAEKWYP--SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSES 536 (1231)
Q Consensus 460 -sLl~QW~~E~~kw~p--~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~ 536 (1231)
.|+.||.+++.++.. +..+..+++..... ......
T Consensus 85 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~ 122 (395)
T 3pey_A 85 RELARQTLEVVQEMGKFTKITSQLIVPDSFEK------------------------------------------NKQINA 122 (395)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEESTTSSCT------------------------------------------TSCBCC
T ss_pred HHHHHHHHHHHHHHhcccCeeEEEEecCchhh------------------------------------------hccCCC
Confidence 688999999999874 34444444321100 001245
Q ss_pred CEEEeCHHHHHHHHhh--hhcCCccEEEEeCCcccCCcch---HHHHHHHhcc-cccEEEecccCccCChHHHHHhhhhh
Q 044798 537 GLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHRIRNPNA---EISLVCKQLQ-TVHRIIMTGAPIQNKLSELWSLFDFV 610 (1231)
Q Consensus 537 ~VvItTYe~Lr~~~~~--L~~~~wd~VILDEAH~IKN~~S---k~skalk~L~-t~~RllLTGTPiqNnl~EL~SLl~FL 610 (1231)
+|+|+||+.+...... +....|++||+||||++.+... .....+..+. ....++|||||-.. +..++..+
T Consensus 123 ~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~----~~~~~~~~ 198 (395)
T 3pey_A 123 QVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADA----VRQYAKKI 198 (395)
T ss_dssp SEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHH----HHHHHHHH
T ss_pred CEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHH----HHHHHHHh
Confidence 8999999999765532 3345789999999999865222 2222333333 34668899998321 11111111
Q ss_pred cCCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHH
Q 044798 611 FPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRA 690 (1231)
Q Consensus 611 ~P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~ 690 (1231)
.+ .+..... .....+.......+...
T Consensus 199 ~~--------------~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~------ 224 (395)
T 3pey_A 199 VP--------------NANTLEL----------------------------------QTNEVNVDAIKQLYMDC------ 224 (395)
T ss_dssp SC--------------SCEEECC----------------------------------CGGGCSCTTEEEEEEEC------
T ss_pred CC--------------CCeEEEc----------------------------------cccccccccccEEEEEc------
Confidence 00 0000000 00000000011111110
Q ss_pred HHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEec
Q 044798 691 VYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQ 770 (1231)
Q Consensus 691 lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ 770 (1231)
.....|...+..++... .+.++||||+
T Consensus 225 ---------------------------------------------------~~~~~~~~~l~~~~~~~--~~~~~lvf~~ 251 (395)
T 3pey_A 225 ---------------------------------------------------KNEADKFDVLTELYGLM--TIGSSIIFVA 251 (395)
T ss_dssp ---------------------------------------------------SSHHHHHHHHHHHHTTT--TSSEEEEECS
T ss_pred ---------------------------------------------------CchHHHHHHHHHHHHhc--cCCCEEEEeC
Confidence 01234555566655543 3579999999
Q ss_pred cHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCC------C
Q 044798 771 TQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDW------N 844 (1231)
Q Consensus 771 ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~W------N 844 (1231)
++..++.+...|...|+.+..++|.++..+|..+++.|+++. +. +|++|+++++|||+++++.||+||+|| +
T Consensus 252 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s 329 (395)
T 3pey_A 252 TKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGR-SK-VLITTNVLARGIDIPTVSMVVNYDLPTLANGQAD 329 (395)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS-CC-EEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBC
T ss_pred CHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCC-CC-EEEECChhhcCCCcccCCEEEEcCCCCCCcCCCC
Confidence 999999999999999999999999999999999999999874 44 478999999999999999999999999 9
Q ss_pred cchHHHHHHhHHhhCCcccEEE
Q 044798 845 PSTDVQARERAWRIGQKQDVTV 866 (1231)
Q Consensus 845 Ps~d~QAigRa~RiGQkk~V~V 866 (1231)
+..+.|++||++|.|+...+++
T Consensus 330 ~~~~~Qr~GR~gR~g~~g~~~~ 351 (395)
T 3pey_A 330 PATYIHRIGRTGRFGRKGVAIS 351 (395)
T ss_dssp HHHHHHHHTTSSCTTCCEEEEE
T ss_pred HHHhhHhccccccCCCCceEEE
Confidence 9999999999999997655544
No 25
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.96 E-value=1.1e-29 Score=293.64 Aligned_cols=327 Identities=14% Similarity=0.145 Sum_probs=118.1
Q ss_pred cCCcccChhhhh--------hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHH-hhcCCCCcEEEEeCC
Q 044798 389 EGGLKIPESIFN--------NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGAL-HFSNMYKPSIVVCPV 459 (1231)
Q Consensus 389 ~~~~~iP~~i~~--------~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L-~~s~~~kpvLIV~P~ 459 (1231)
+..+.+|+.+.. .|+|||.+++.+++. +..+++.++||+|||++++..+... ......+++|||||.
T Consensus 23 f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~ 98 (394)
T 1fuu_A 23 FDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPT 98 (394)
T ss_dssp SGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSS
T ss_pred hhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCC
Confidence 444567777743 578999999999854 5679999999999999865554443 333345699999996
Q ss_pred -cchHHHHHHHHHHcC--CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCC
Q 044798 460 -TLLRQWKREAEKWYP--SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSES 536 (1231)
Q Consensus 460 -sLl~QW~~E~~kw~p--~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~ 536 (1231)
.++.||.+++.++++ ++++..+++....... .. .+ ...
T Consensus 99 ~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-------------------------------------~~-~~-~~~ 139 (394)
T 1fuu_A 99 RELALQIQKVVMALAFHMDIKVHACIGGTSFVED-------------------------------------AE-GL-RDA 139 (394)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHH-------------------------------------HH-HH-HHC
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHH-------------------------------------Hh-hc-CCC
Confidence 889999999999975 4666666654321100 00 01 135
Q ss_pred CEEEeCHHHHHHHHh--hhhcCCccEEEEeCCcccCCc--chHHHHHHHhcc-cccEEEecccCccCChHHHHHhhhhhc
Q 044798 537 GLLITTYEQLRLLGE--KLLDVEWGYAVLDEGHRIRNP--NAEISLVCKQLQ-TVHRIIMTGAPIQNKLSELWSLFDFVF 611 (1231)
Q Consensus 537 ~VvItTYe~Lr~~~~--~L~~~~wd~VILDEAH~IKN~--~Sk~skalk~L~-t~~RllLTGTPiqNnl~EL~SLl~FL~ 611 (1231)
+|+|+||+.+..... .+....|++||+||||++.+. ...+...+..+. ....++|||||-.. +.++ +.
T Consensus 140 ~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~-~~~~---~~--- 212 (394)
T 1fuu_A 140 QIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPND-VLEV---TT--- 212 (394)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHH-HHHH---HH---
T ss_pred CEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHH-HHHH---HH---
Confidence 899999999876554 233457899999999998433 334455555553 45678899998431 1111 10
Q ss_pred CCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHH
Q 044798 612 PGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAV 691 (1231)
Q Consensus 612 P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~l 691 (1231)
..+..|.. +.+........-
T Consensus 213 -----------~~~~~~~~-------------------------------------------------~~~~~~~~~~~~ 232 (394)
T 1fuu_A 213 -----------KFMRNPVR-------------------------------------------------ILVKKDELTLEG 232 (394)
T ss_dssp -----------HHCCSCEE-------------------------------------------------EEECC-------
T ss_pred -----------HhcCCCeE-------------------------------------------------EEecCccccCCC
Confidence 00001110 000000000000
Q ss_pred HHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEecc
Q 044798 692 YRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQT 771 (1231)
Q Consensus 692 Y~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~ 771 (1231)
...+. ..+ .....|...+..++... .+.++||||++
T Consensus 233 ~~~~~-----------------------~~~-------------------~~~~~~~~~l~~~~~~~--~~~~~lVf~~~ 268 (394)
T 1fuu_A 233 IKQFY-----------------------VNV-------------------EEEEYKYECLTDLYDSI--SVTQAVIFCNT 268 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEE-----------------------EEc-------------------CchhhHHHHHHHHHhcC--CCCcEEEEECC
Confidence 00000 000 00112344455555443 35699999999
Q ss_pred HHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHH
Q 044798 772 QQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQA 851 (1231)
Q Consensus 772 ~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QA 851 (1231)
+..++.+...|...|+.+..++|.++..+|..+++.|+++. + .+|++|+++++|+|+++++.||+||+||++..+.|+
T Consensus 269 ~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~-~-~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr 346 (394)
T 1fuu_A 269 RRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGS-S-RILISTDLLARGIDVQQVSLVINYDLPANKENYIHR 346 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCC-C-cEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999874 3 457899999999999999999999999999999999
Q ss_pred HHhHHhhCCcccEEEEEEEeCC
Q 044798 852 RERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 852 igRa~RiGQkk~V~VYRLit~g 873 (1231)
+||++|.|+...+++ |+...
T Consensus 347 ~GR~~R~g~~g~~~~--~~~~~ 366 (394)
T 1fuu_A 347 IGRGGRFGRKGVAIN--FVTNE 366 (394)
T ss_dssp ----------------------
T ss_pred cCcccCCCCCceEEE--EEchh
Confidence 999999998765544 45544
No 26
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.96 E-value=3.5e-28 Score=283.82 Aligned_cols=332 Identities=20% Similarity=0.233 Sum_probs=223.6
Q ss_pred CcccccCCcccChhhh--------hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHH-HHhhcC------
Q 044798 384 PFVTLEGGLKIPESIF--------NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLG-ALHFSN------ 448 (1231)
Q Consensus 384 ~~~~~~~~~~iP~~i~--------~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~-~L~~s~------ 448 (1231)
..+..+..+.+++.+. ..|+|+|.+++..+ ..+..+|+..+||+|||++++..+. .+...+
T Consensus 12 ~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i----~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~ 87 (417)
T 2i4i_A 12 PHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPII----KEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALR 87 (417)
T ss_dssp CCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHH
T ss_pred cccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHH----ccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhh
Confidence 3344455567777774 35789999999876 4577899999999999997655443 333221
Q ss_pred ------------CCCcEEEEeCC-cchHHHHHHHHHHcC--CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCcc
Q 044798 449 ------------MYKPSIVVCPV-TLLRQWKREAEKWYP--SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYE 513 (1231)
Q Consensus 449 ------------~~kpvLIV~P~-sLl~QW~~E~~kw~p--~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~ 513 (1231)
....+|||||. .|+.||.+++.+|.. ++++..++|......
T Consensus 88 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~------------------------ 143 (417)
T 2i4i_A 88 AMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQ------------------------ 143 (417)
T ss_dssp HHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHH------------------------
T ss_pred ccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHH------------------------
Confidence 12569999996 889999999999874 467777766432111
Q ss_pred CcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--hhcCCccEEEEeCCcccCCcc--hHHHHHHHhc--c---
Q 044798 514 GNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHRIRNPN--AEISLVCKQL--Q--- 584 (1231)
Q Consensus 514 ~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~--L~~~~wd~VILDEAH~IKN~~--Sk~skalk~L--~--- 584 (1231)
....+....+|+|+||+.+...... +....+++||+||||++.+.+ ..+...+... .
T Consensus 144 --------------~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~ 209 (417)
T 2i4i_A 144 --------------QIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKG 209 (417)
T ss_dssp --------------HHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBT
T ss_pred --------------HHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcC
Confidence 0111234568999999999776543 334568999999999986543 2233333321 1
Q ss_pred cccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHH
Q 044798 585 TVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRM 664 (1231)
Q Consensus 585 t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRt 664 (1231)
....+++||||-.+ +.+ ++... +..|+..... +
T Consensus 210 ~~~~i~~SAT~~~~-~~~---~~~~~--------------~~~~~~~~~~----------------------------~- 242 (417)
T 2i4i_A 210 VRHTMMFSATFPKE-IQM---LARDF--------------LDEYIFLAVG----------------------------R- 242 (417)
T ss_dssp TBEEEEEESCCCHH-HHH---HHHHH--------------CSSCEEEEEC------------------------------
T ss_pred CcEEEEEEEeCCHH-HHH---HHHHH--------------cCCCEEEEeC----------------------------C-
Confidence 24568899998321 111 11110 0011000000 0
Q ss_pred HHHHhhcCCCc-eEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCC
Q 044798 665 KADVNAQLPKK-TEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPE 743 (1231)
Q Consensus 665 K~dV~~dLP~K-~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~ 743 (1231)
. ...++. ...++++.
T Consensus 243 ---~-~~~~~~i~~~~~~~~------------------------------------------------------------ 258 (417)
T 2i4i_A 243 ---V-GSTSENITQKVVWVE------------------------------------------------------------ 258 (417)
T ss_dssp -------CCSSEEEEEEECC------------------------------------------------------------
T ss_pred ---C-CCCccCceEEEEEec------------------------------------------------------------
Confidence 0 001111 11122221
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccc
Q 044798 744 RSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKV 823 (1231)
Q Consensus 744 ~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkv 823 (1231)
...|...|.+++... ..+.++||||+++..++.+..+|...|+.+..++|.++..+|..+++.|+++ .+. +|++|++
T Consensus 259 ~~~~~~~l~~~l~~~-~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~-vlvaT~~ 335 (417)
T 2i4i_A 259 ESDKRSFLLDLLNAT-GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG-KSP-ILVATAV 335 (417)
T ss_dssp GGGHHHHHHHHHHTC-CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHT-SSC-EEEECHH
T ss_pred cHhHHHHHHHHHHhc-CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcC-CCC-EEEECCh
Confidence 123445555555543 3467999999999999999999999999999999999999999999999987 344 5789999
Q ss_pred cccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCC
Q 044798 824 GGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 824 Gg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~g 873 (1231)
+++|||++.++.||+||+||++..+.|++||++|.|+.. .+|.|+...
T Consensus 336 ~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g--~~~~~~~~~ 383 (417)
T 2i4i_A 336 AARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLG--LATSFFNER 383 (417)
T ss_dssp HHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCE--EEEEEECGG
T ss_pred hhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCc--eEEEEEccc
Confidence 999999999999999999999999999999999999764 444556543
No 27
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.96 E-value=2.5e-27 Score=275.52 Aligned_cols=326 Identities=17% Similarity=0.203 Sum_probs=220.4
Q ss_pred ccCCcccChhhh--------hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHh-hcCCCCcEEEEeC
Q 044798 388 LEGGLKIPESIF--------NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH-FSNMYKPSIVVCP 458 (1231)
Q Consensus 388 ~~~~~~iP~~i~--------~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~-~s~~~kpvLIV~P 458 (1231)
.+..+.+++.+. ..++|||.+++..+.. ..+..+|+..+||+|||++++..+.... .......+|||||
T Consensus 26 ~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~--~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P 103 (412)
T 3fht_A 26 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 103 (412)
T ss_dssp CTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHS--SSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred CHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc--CCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECC
Confidence 344566677664 3579999999988744 2347899999999999999765554433 3334458999999
Q ss_pred C-cchHHHHHHHHHHc---CCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcC
Q 044798 459 V-TLLRQWKREAEKWY---PSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRS 534 (1231)
Q Consensus 459 ~-sLl~QW~~E~~kw~---p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~ 534 (1231)
. .|+.||.+.+.++. +...+....+...... ....
T Consensus 104 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~ 142 (412)
T 3fht_A 104 TYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-----------------------------------------GQKI 142 (412)
T ss_dssp SHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCT-----------------------------------------TCCC
T ss_pred CHHHHHHHHHHHHHHHhhcccceEEEeecCcchhh-----------------------------------------hhcC
Confidence 6 68889988888775 4566666654332100 0012
Q ss_pred CCCEEEeCHHHHHHHHhh---hhcCCccEEEEeCCcccCC---cchHHHHHHHhcc-cccEEEecccCccCChHHHHHhh
Q 044798 535 ESGLLITTYEQLRLLGEK---LLDVEWGYAVLDEGHRIRN---PNAEISLVCKQLQ-TVHRIIMTGAPIQNKLSELWSLF 607 (1231)
Q Consensus 535 ~~~VvItTYe~Lr~~~~~---L~~~~wd~VILDEAH~IKN---~~Sk~skalk~L~-t~~RllLTGTPiqNnl~EL~SLl 607 (1231)
..+|+|+|++.+...... +....+++||+||||++.. ........+..+. ....++|||||-. +++.++
T Consensus 143 ~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~----~~~~~~ 218 (412)
T 3fht_A 143 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED----SVWKFA 218 (412)
T ss_dssp CCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCH----HHHHHH
T ss_pred CCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCH----HHHHHH
Confidence 358999999999776533 3334689999999998854 2222333333443 3456889999843 222211
Q ss_pred hhhcCCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHH
Q 044798 608 DFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEE 687 (1231)
Q Consensus 608 ~FL~P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~ 687 (1231)
....+ .|...... . ....++......+.+.
T Consensus 219 ~~~~~--------------~~~~~~~~------------------------------~--~~~~~~~~~~~~~~~~---- 248 (412)
T 3fht_A 219 QKVVP--------------DPNVIKLK------------------------------R--EEETLDTIKQYYVLCS---- 248 (412)
T ss_dssp HHHSS--------------SCEEECCC------------------------------G--GGSSCTTEEEEEEECS----
T ss_pred HHhcC--------------CCeEEeec------------------------------c--ccccccCceEEEEEcC----
Confidence 11110 00000000 0 0000111111111111
Q ss_pred HHHHHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEE
Q 044798 688 QRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLL 767 (1231)
Q Consensus 688 Qr~lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLV 767 (1231)
....|+..|..++... .+.++||
T Consensus 249 -------------------------------------------------------~~~~~~~~l~~~~~~~--~~~~~lv 271 (412)
T 3fht_A 249 -------------------------------------------------------SRDEKFQALCNLYGAI--TIAQAMI 271 (412)
T ss_dssp -------------------------------------------------------SHHHHHHHHHHHHHHH--SSSEEEE
T ss_pred -------------------------------------------------------ChHHHHHHHHHHHhhc--CCCCEEE
Confidence 1134666677776653 3569999
Q ss_pred EeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCc--
Q 044798 768 FAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNP-- 845 (1231)
Q Consensus 768 FSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNP-- 845 (1231)
||+++..++.+...|...|+.+..++|.++..+|..+++.|+++. +. +|++|+++++|||+++++.||+||+||++
T Consensus 272 f~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~-~~-vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~ 349 (412)
T 3fht_A 272 FCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK-EK-VLVTTNVCARGIDVEQVSVVINFDLPVDKDG 349 (412)
T ss_dssp ECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTS-CS-EEEECGGGTSSCCCTTEEEEEESSCCBCSSS
T ss_pred EeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCC-Cc-EEEEcCccccCCCccCCCEEEEECCCCCCCC
Confidence 999999999999999999999999999999999999999999874 44 57899999999999999999999999987
Q ss_pred ----chHHHHHHhHHhhCCcccEEEEEEEe
Q 044798 846 ----STDVQARERAWRIGQKQDVTVYRLIT 871 (1231)
Q Consensus 846 ----s~d~QAigRa~RiGQkk~V~VYRLit 871 (1231)
..+.|++||++|.|+...+ |.|+.
T Consensus 350 ~~s~~~~~Qr~GR~gR~g~~g~~--~~~~~ 377 (412)
T 3fht_A 350 NPDNETYLHRIGRTGRFGKRGLA--VNMVD 377 (412)
T ss_dssp SBCHHHHHHHHTTSSCTTCCEEE--EEEEC
T ss_pred CcchheeecccCcccCCCCCceE--EEEEc
Confidence 5999999999999976544 43443
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.95 E-value=1.3e-26 Score=271.95 Aligned_cols=305 Identities=17% Similarity=0.157 Sum_probs=215.2
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcC-CCeE
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYP-SFHV 478 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p-~lrV 478 (1231)
.++|||.+++..+ ..+..+|+..+||+|||+.++..+.... ...+.+|||||. .|+.||.+++.+|.+ ++++
T Consensus 21 ~~~~~Q~~~i~~i----~~~~~~lv~apTGsGKT~~~l~~~~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v 94 (414)
T 3oiy_A 21 DLTGYQRLWAKRI----VQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLADEKVKI 94 (414)
T ss_dssp CCCHHHHHHHHHH----TTTCCEECCSCSSSSHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCE
T ss_pred CCCHHHHHHHHHH----hcCCCEEEEeCCCCCHHHHHHHHHHHHh--cCCCEEEEEECCHHHHHHHHHHHHHHccCCceE
Confidence 5789999999887 4567899999999999996555444333 445789999996 889999999999986 6788
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcCCc
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEW 558 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~~w 558 (1231)
..++|...... +............+|+|+|++.+......+....+
T Consensus 95 ~~~~g~~~~~~----------------------------------~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~ 140 (414)
T 3oiy_A 95 FGFYSSMKKEE----------------------------------KEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRF 140 (414)
T ss_dssp EECCTTSCHHH----------------------------------HHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCC
T ss_pred EEEECCCChhh----------------------------------HHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccc
Confidence 88877543211 01112222234479999999999877777777789
Q ss_pred cEEEEeCCcccC-------------CcchH-HHHHHHhc------------ccccEEEecccCccCChHHHHHhhhhhcC
Q 044798 559 GYAVLDEGHRIR-------------NPNAE-ISLVCKQL------------QTVHRIIMTGAPIQNKLSELWSLFDFVFP 612 (1231)
Q Consensus 559 d~VILDEAH~IK-------------N~~Sk-~skalk~L------------~t~~RllLTGTPiqNnl~EL~SLl~FL~P 612 (1231)
++||+||||.+. +.... +...+..+ .....+++||||....+...+.
T Consensus 141 ~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~------- 213 (414)
T 3oiy_A 141 DFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLF------- 213 (414)
T ss_dssp SEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHH-------
T ss_pred cEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHH-------
Confidence 999999999873 22223 34444444 3446688999977665432211
Q ss_pred CCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHH
Q 044798 613 GKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVY 692 (1231)
Q Consensus 613 ~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY 692 (1231)
...+. +.... ....+....+.+ +..
T Consensus 214 ---------~~~~~--~~~~~-----------------------------------~~~~~~~i~~~~-~~~-------- 238 (414)
T 3oiy_A 214 ---------RDLLN--FTVGR-----------------------------------LVSVARNITHVR-ISS-------- 238 (414)
T ss_dssp ---------HHHHS--CCSSC-----------------------------------CCCCCCSEEEEE-ESS--------
T ss_pred ---------HHhhc--cCcCc-----------------------------------cccccccchhee-ecc--------
Confidence 00000 00000 000111111111 110
Q ss_pred HHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccH
Q 044798 693 RAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQ 772 (1231)
Q Consensus 693 ~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~ 772 (1231)
.|...|.++|.. .+.++||||+++
T Consensus 239 -----------------------------------------------------~~~~~l~~~l~~---~~~~~lVF~~~~ 262 (414)
T 3oiy_A 239 -----------------------------------------------------RSKEKLVELLEI---FRDGILIFAQTE 262 (414)
T ss_dssp -----------------------------------------------------CCHHHHHHHHHH---HCSSEEEEESSH
T ss_pred -----------------------------------------------------CHHHHHHHHHHH---cCCCEEEEECCH
Confidence 133345555554 357999999999
Q ss_pred HHHHHHHHHHHHcCCcEE-EEeCCCCHHHHHHHHHHHhCCCCceEEEEe---ccccccccCCCC-CCEEEEcCCC--CCc
Q 044798 773 QMLDILESFLIASGYEYR-RMDGLTPVKQRMALIDEYNNSSDVFIFILT---TKVGGLGTNLTG-ANRVIIFDPD--WNP 845 (1231)
Q Consensus 773 ~~LdiLe~~L~~~Gi~~~-rIdGsts~~eRq~iId~Fn~d~~i~VfLlS---TkvGg~GLNLt~-AnrVIi~Dp~--WNP 845 (1231)
..++.+...|...|+.+. .++|. +|. ++.|+++ .+.|++.| |+++++|||+++ ++.||+||+| +++
T Consensus 263 ~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g-~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~ 335 (414)
T 3oiy_A 263 EEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVG-KINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDV 335 (414)
T ss_dssp HHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTT-SCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCH
T ss_pred HHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCC-CCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCH
Confidence 999999999999999998 99994 454 9999988 56775554 999999999999 9999999999 999
Q ss_pred chHHHHHHhHHhhCCc--ccEEEEEEE
Q 044798 846 STDVQARERAWRIGQK--QDVTVYRLI 870 (1231)
Q Consensus 846 s~d~QAigRa~RiGQk--k~V~VYRLi 870 (1231)
..|.|++||++|.|+. +.-.+|.|+
T Consensus 336 ~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 336 YTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp HHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred HHHHHHhCccccCCCCCCcceEEEEEE
Confidence 9999999999999985 456666666
No 29
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.95 E-value=1e-26 Score=282.70 Aligned_cols=304 Identities=15% Similarity=0.154 Sum_probs=217.9
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeEE
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHVE 479 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV~ 479 (1231)
.++|||.+++..+. .+..+++..+||+|||+.++..+. .. .+.+|||+|. .|+.||...+..+ +..+.
T Consensus 25 ~~r~~Q~~~i~~il----~g~d~lv~apTGsGKTl~~~lp~l--~~---~g~~lvi~P~~aL~~q~~~~l~~~--gi~~~ 93 (523)
T 1oyw_A 25 QFRPGQEEIIDTVL----SGRDCLVVMPTGGGKSLCYQIPAL--LL---NGLTVVVSPLISLMKDQVDQLQAN--GVAAA 93 (523)
T ss_dssp SCCTTHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHH--HS---SSEEEEECSCHHHHHHHHHHHHHT--TCCEE
T ss_pred CCCHHHHHHHHHHH----cCCCEEEECCCCcHHHHHHHHHHH--Hh---CCCEEEECChHHHHHHHHHHHHHc--CCcEE
Confidence 57999999999873 567899999999999986553332 21 3689999996 8899999999986 45666
Q ss_pred EEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHH--HHhhhhcCC
Q 044798 480 LLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRL--LGEKLLDVE 557 (1231)
Q Consensus 480 il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~--~~~~L~~~~ 557 (1231)
++++...... +............+|+++|++.+.. ....+....
T Consensus 94 ~l~~~~~~~~----------------------------------~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~ 139 (523)
T 1oyw_A 94 CLNSTQTREQ----------------------------------QLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWN 139 (523)
T ss_dssp EECTTSCHHH----------------------------------HHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSC
T ss_pred EEeCCCCHHH----------------------------------HHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCC
Confidence 6665433211 1112233334567999999999843 223455578
Q ss_pred ccEEEEeCCcccCCcch-------HHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccc
Q 044798 558 WGYAVLDEGHRIRNPNA-------EISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPIT 630 (1231)
Q Consensus 558 wd~VILDEAH~IKN~~S-------k~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~ 630 (1231)
+.+||+||||.+...+. .+......+....+++|||||..+...++...+.+-.|. +.
T Consensus 140 ~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~---------------~~ 204 (523)
T 1oyw_A 140 PVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPL---------------IQ 204 (523)
T ss_dssp EEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCE---------------EE
T ss_pred CCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCe---------------EE
Confidence 99999999999965431 122333444567789999999766555555544331110 00
Q ss_pred cCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcc
Q 044798 631 VGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRN 710 (1231)
Q Consensus 631 ~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~ 710 (1231)
...+ .-|.. .+.+ +.
T Consensus 205 ~~~~------------------------------------~r~~l-~~~v-~~--------------------------- 219 (523)
T 1oyw_A 205 ISSF------------------------------------DRPNI-RYML-ME--------------------------- 219 (523)
T ss_dssp ECCC------------------------------------CCTTE-EEEE-EE---------------------------
T ss_pred eCCC------------------------------------CCCce-EEEE-Ee---------------------------
Confidence 0000 00111 1111 00
Q ss_pred hhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEE
Q 044798 711 SLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYR 790 (1231)
Q Consensus 711 ~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~ 790 (1231)
...++..|.++|... .+.++||||.++...+.+...|...|+.+.
T Consensus 220 ---------------------------------~~~~~~~l~~~l~~~--~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~ 264 (523)
T 1oyw_A 220 ---------------------------------KFKPLDQLMRYVQEQ--RGKSGIIYCNSRAKVEDTAARLQSKGISAA 264 (523)
T ss_dssp ---------------------------------CSSHHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTTCCEE
T ss_pred ---------------------------------CCCHHHHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHHCCCCEE
Confidence 012333455555432 467999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEE
Q 044798 791 RMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866 (1231)
Q Consensus 791 rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~V 866 (1231)
.+||+++..+|..+++.|.++. +.| |++|.++|+|||++.++.||+|++||++..|.|++||++|.|+...+.+
T Consensus 265 ~~h~~l~~~~R~~~~~~f~~g~-~~v-lVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l 338 (523)
T 1oyw_A 265 AYHAGLENNVRADVQEKFQRDD-LQI-VVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPAEAML 338 (523)
T ss_dssp EECTTSCHHHHHHHHHHHHTTS-CSE-EEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTSSCEEEEE
T ss_pred EecCCCCHHHHHHHHHHHHcCC-CeE-EEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCCCCceEEE
Confidence 9999999999999999999884 555 7789999999999999999999999999999999999999998766554
No 30
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.94 E-value=1.3e-25 Score=275.68 Aligned_cols=324 Identities=16% Similarity=0.215 Sum_probs=211.8
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcC-----CCCcEEEEeCC-cchHHHHHHHHHHc-
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN-----MYKPSIVVCPV-TLLRQWKREAEKWY- 473 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~-----~~kpvLIV~P~-sLl~QW~~E~~kw~- 473 (1231)
.|+|||.+++..++. ..+..+|+..+||+|||++++..+....... ....+|||||. .|+.||.+++.+++
T Consensus 43 ~~~~~Q~~~i~~il~--~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 43 GLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 120 (579)
T ss_dssp SCCHHHHHHHHHHHC--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHh
Confidence 589999999987742 2466789999999999998666555443322 23479999996 88999999999874
Q ss_pred -----CCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHH
Q 044798 474 -----PSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRL 548 (1231)
Q Consensus 474 -----p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~ 548 (1231)
+...+..+.+.... ............+|+|+|++.+..
T Consensus 121 ~~~~~~~~~~~~~~gg~~~-------------------------------------~~~~~~l~~~~~~IlV~Tp~~l~~ 163 (579)
T 3sqw_A 121 MNYGLKKYACVSLVGGTDF-------------------------------------RAAMNKMNKLRPNIVIATPGRLID 163 (579)
T ss_dssp HCGGGTTSCEEEECTTSCH-------------------------------------HHHHHHHHHHCCSEEEECHHHHHH
T ss_pred hcccccceEEEEEECCccH-------------------------------------HHHHHHHhcCCCCEEEECHHHHHH
Confidence 34555555443221 111222223457899999999976
Q ss_pred HHhh---hhcCCccEEEEeCCcccCCcc--hHHHHHHHhc---c-----cccEEEecccCccCChHHHHHhhhhhcCCCC
Q 044798 549 LGEK---LLDVEWGYAVLDEGHRIRNPN--AEISLVCKQL---Q-----TVHRIIMTGAPIQNKLSELWSLFDFVFPGKL 615 (1231)
Q Consensus 549 ~~~~---L~~~~wd~VILDEAH~IKN~~--Sk~skalk~L---~-----t~~RllLTGTPiqNnl~EL~SLl~FL~P~~l 615 (1231)
.... .....+++|||||||++.+.+ ..+...+..+ . ....++||||+-. .+.++ +..+...
T Consensus 164 ~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~~---~~~~l~~-- 237 (579)
T 3sqw_A 164 VLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQKL---ANNIMNK-- 237 (579)
T ss_dssp HHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHHH---TTTTCCS--
T ss_pred HHHhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCCh-HHHHH---HHHHcCC--
Confidence 5543 234568999999999997653 2222333333 1 3457899999743 12221 1111000
Q ss_pred CChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceE-EEEEecCCHHHHHHHHH
Q 044798 616 GVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTE-HVLFCSLTEEQRAVYRA 694 (1231)
Q Consensus 616 g~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e-~vv~~~Lt~~Qr~lY~~ 694 (1231)
.. .+....... .......... .++.+.-..
T Consensus 238 --~~--------~~~~~~~~~-------------------------------~~~~~~~~i~~~~~~~~~~~-------- 268 (579)
T 3sqw_A 238 --KE--------CLFLDTVDK-------------------------------NEPEAHERIDQSVVISEKFA-------- 268 (579)
T ss_dssp --SE--------EEEEESSCS-------------------------------SSCSSCTTEEEEEEEESSTT--------
T ss_pred --Cc--------eEEEeecCc-------------------------------cccccccccceEEEEecchh--------
Confidence 00 000000000 0000011111 111211100
Q ss_pred HHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHH--hcCCeEEEEeccH
Q 044798 695 FLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWK--DQGHRVLLFAQTQ 772 (1231)
Q Consensus 695 ~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~--~~g~KVLVFSQ~~ 772 (1231)
..+...+..++..+. ..+.++||||.++
T Consensus 269 --------------------------------------------------~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~ 298 (579)
T 3sqw_A 269 --------------------------------------------------NSIFAAVEHIKKQIKERDSNYKAIIFAPTV 298 (579)
T ss_dssp --------------------------------------------------HHHHHHHHHHHHHHHHTTTCCEEEEECSSH
T ss_pred --------------------------------------------------hhHHHHHHHHHHHHhhcCCCCcEEEECCcH
Confidence 011112222222222 3467999999999
Q ss_pred HHHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHH
Q 044798 773 QMLDILESFLIAS---GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDV 849 (1231)
Q Consensus 773 ~~LdiLe~~L~~~---Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~ 849 (1231)
..++.+...|... |+.+..+||.++..+|..+++.|.++. +. +|++|+++++|||+++++.||+||+||++..|.
T Consensus 299 ~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~-~~-vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~ 376 (579)
T 3sqw_A 299 KFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE-SG-ILVCTDVGARGMDFPNVHEVLQIGVPSELANYI 376 (579)
T ss_dssp HHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS-SE-EEEECGGGTSSCCCTTCCEEEEESCCSSTTHHH
T ss_pred HHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCC-Ce-EEEEcchhhcCCCcccCCEEEEcCCCCCHHHhh
Confidence 9999999999987 999999999999999999999999874 44 578999999999999999999999999999999
Q ss_pred HHHHhHHhhCCcccEEEEEEEeC
Q 044798 850 QARERAWRIGQKQDVTVYRLITR 872 (1231)
Q Consensus 850 QAigRa~RiGQkk~V~VYRLit~ 872 (1231)
|++||++|.|+...+.+ |++.
T Consensus 377 Qr~GRagR~g~~g~~i~--~~~~ 397 (579)
T 3sqw_A 377 HRIGRTARSGKEGSSVL--FICK 397 (579)
T ss_dssp HHHTTSSCTTCCEEEEE--EEEG
T ss_pred hhccccccCCCCceEEE--EEcc
Confidence 99999999997654444 4554
No 31
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.94 E-value=3e-25 Score=270.77 Aligned_cols=326 Identities=16% Similarity=0.203 Sum_probs=210.5
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCC-----CCcEEEEeCC-cchHHHHHHHHHHc
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNM-----YKPSIVVCPV-TLLRQWKREAEKWY 473 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~-----~kpvLIV~P~-sLl~QW~~E~~kw~ 473 (1231)
..|+|||.+++..++. ..+...|+..+||+|||++++..+........ ...+|||||. .|+.||.+++.+++
T Consensus 93 ~~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~ 170 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIH 170 (563)
T ss_dssp SSCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHH
Confidence 3589999999988742 24567899999999999986665554433322 2479999995 88999999999874
Q ss_pred ------CCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHH
Q 044798 474 ------PSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLR 547 (1231)
Q Consensus 474 ------p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr 547 (1231)
+...+..+.+..... ...........+|+|+|++.+.
T Consensus 171 ~~~~~~~~~~~~~~~g~~~~~-------------------------------------~~~~~~~~~~~~Iiv~Tp~~l~ 213 (563)
T 3i5x_A 171 DMNYGLKKYACVSLVGGTDFR-------------------------------------AAMNKMNKLRPNIVIATPGRLI 213 (563)
T ss_dssp HHCGGGTTSCEEEECTTSCHH-------------------------------------HHHHHHHHHCCSEEEECHHHHH
T ss_pred hhccccCceeEEEEECCcCHH-------------------------------------HHHHHHhcCCCCEEEECcHHHH
Confidence 234455554432211 1122222345799999999997
Q ss_pred HHHhh---hhcCCccEEEEeCCcccCCcc--hHHHHHHHhc---c-----cccEEEecccCccCChHHHHHhhhhhcCCC
Q 044798 548 LLGEK---LLDVEWGYAVLDEGHRIRNPN--AEISLVCKQL---Q-----TVHRIIMTGAPIQNKLSELWSLFDFVFPGK 614 (1231)
Q Consensus 548 ~~~~~---L~~~~wd~VILDEAH~IKN~~--Sk~skalk~L---~-----t~~RllLTGTPiqNnl~EL~SLl~FL~P~~ 614 (1231)
..... .....+++|||||||++...+ ......+..+ . ....++|||||-. .+.++ +..+...
T Consensus 214 ~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~-~v~~~---~~~~~~~- 288 (563)
T 3i5x_A 214 DVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDD-KVQKL---ANNIMNK- 288 (563)
T ss_dssp HHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCT-HHHHH---TTTTCCS-
T ss_pred HHHHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCH-HHHHH---HHHhcCC-
Confidence 65543 233468999999999987653 2222233322 1 3357899999842 12221 1111000
Q ss_pred CCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCce-EEEEEecCCHHHHHHHH
Q 044798 615 LGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKT-EHVLFCSLTEEQRAVYR 693 (1231)
Q Consensus 615 lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~-e~vv~~~Lt~~Qr~lY~ 693 (1231)
.. .+....... ......... ..++.+....
T Consensus 289 ---~~--------~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~------- 319 (563)
T 3i5x_A 289 ---KE--------CLFLDTVDK-------------------------------NEPEAHERIDQSVVISEKFA------- 319 (563)
T ss_dssp ---SE--------EEEEESSCS-------------------------------SSCSSCTTEEEEEEEESSTT-------
T ss_pred ---Cc--------eEEEeccCC-------------------------------CCccccccCceEEEECchhH-------
Confidence 00 000000000 000001111 1111111100
Q ss_pred HHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHH--hcCCeEEEEecc
Q 044798 694 AFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWK--DQGHRVLLFAQT 771 (1231)
Q Consensus 694 ~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~--~~g~KVLVFSQ~ 771 (1231)
......+..++..+. ..+.++||||.+
T Consensus 320 ---------------------------------------------------~~~~~~~~~l~~~~~~~~~~~~~iVF~~s 348 (563)
T 3i5x_A 320 ---------------------------------------------------NSIFAAVEHIKKQIKERDSNYKAIIFAPT 348 (563)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHTTTCCEEEEECSC
T ss_pred ---------------------------------------------------hhHHHHHHHHHHHHhhcCCCCcEEEEcCc
Confidence 000111112222222 347799999999
Q ss_pred HHHHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchH
Q 044798 772 QQMLDILESFLIAS---GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTD 848 (1231)
Q Consensus 772 ~~~LdiLe~~L~~~---Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d 848 (1231)
+...+.+...|... |+.+..+||.++..+|..+++.|.++. +. +|++|+++++|||+++++.||+||+|+++..|
T Consensus 349 ~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~-~~-vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y 426 (563)
T 3i5x_A 349 VKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDE-SG-ILVCTDVGARGMDFPNVHEVLQIGVPSELANY 426 (563)
T ss_dssp HHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCS-SE-EEEECGGGTSSCCCTTCCEEEEESCCSSTTHH
T ss_pred HHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCC-CC-EEEEcchhhcCCCcccCCEEEEECCCCchhhh
Confidence 99999999999987 999999999999999999999999874 44 57899999999999999999999999999999
Q ss_pred HHHHHhHHhhCCcccEEEEEEEeCC
Q 044798 849 VQARERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 849 ~QAigRa~RiGQkk~V~VYRLit~g 873 (1231)
.|++||++|.|+.-.+ +.|+...
T Consensus 427 ~Qr~GRagR~g~~g~~--i~~~~~~ 449 (563)
T 3i5x_A 427 IHRIGRTARSGKEGSS--VLFICKD 449 (563)
T ss_dssp HHHHTTSSCTTCCEEE--EEEEEGG
T ss_pred hhhcCccccCCCCceE--EEEEchh
Confidence 9999999999966444 4455544
No 32
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.94 E-value=2.7e-25 Score=273.74 Aligned_cols=310 Identities=13% Similarity=0.117 Sum_probs=213.1
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeEE
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHVE 479 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV~ 479 (1231)
.++|+|.+++..++ .+..+|+..+||+|||+..+..+. . ..+.+|||+|. .|+.||.+.+..+ ++.+.
T Consensus 44 ~~rp~Q~~~i~~il----~g~d~lv~~pTGsGKTl~~~lpal--~---~~g~~lVisP~~~L~~q~~~~l~~~--gi~~~ 112 (591)
T 2v1x_A 44 KFRPLQLETINVTM----AGKEVFLVMPTGGGKSLCYQLPAL--C---SDGFTLVICPLISLMEDQLMVLKQL--GISAT 112 (591)
T ss_dssp SCCTTHHHHHHHHH----TTCCEEEECCTTSCTTHHHHHHHH--T---SSSEEEEECSCHHHHHHHHHHHHHH--TCCEE
T ss_pred CCCHHHHHHHHHHH----cCCCEEEEECCCChHHHHHHHHHH--H---cCCcEEEEeCHHHHHHHHHHHHHhc--CCcEE
Confidence 57899999998873 467899999999999987543332 2 24689999996 8999999999998 66777
Q ss_pred EEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhh--hcCCCCEEEeCHHHHHH---HHhh--
Q 044798 480 LLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRV--LRSESGLLITTYEQLRL---LGEK-- 552 (1231)
Q Consensus 480 il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~--~~~~~~VvItTYe~Lr~---~~~~-- 552 (1231)
++++........ ...... .....+|+++|++.+.. ..+.
T Consensus 113 ~l~~~~~~~~~~----------------------------------~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~ 158 (591)
T 2v1x_A 113 MLNASSSKEHVK----------------------------------WVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE 158 (591)
T ss_dssp ECCSSCCHHHHH----------------------------------HHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH
T ss_pred EEeCCCCHHHHH----------------------------------HHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH
Confidence 777654321111 011111 23467899999998742 2222
Q ss_pred --hhcCCccEEEEeCCcccCCcc-------hHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHH
Q 044798 553 --LLDVEWGYAVLDEGHRIRNPN-------AEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEA 623 (1231)
Q Consensus 553 --L~~~~wd~VILDEAH~IKN~~-------Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~ 623 (1231)
+....+.+||+||||.+...+ ..+......+....+++|||||-..-..++...+..-.+
T Consensus 159 ~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~----------- 227 (591)
T 2v1x_A 159 KAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKC----------- 227 (591)
T ss_dssp HHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSC-----------
T ss_pred hhhhccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCc-----------
Confidence 234578999999999986533 122233344556778999999965444444333322100
Q ss_pred hhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHH
Q 044798 624 EFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQ 703 (1231)
Q Consensus 624 ~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~ 703 (1231)
+.... ....|.....+....-.
T Consensus 228 -----~~~~~-----------------------------------~~~r~nl~~~v~~~~~~------------------ 249 (591)
T 2v1x_A 228 -----FTFTA-----------------------------------SFNRPNLYYEVRQKPSN------------------ 249 (591)
T ss_dssp -----EEEEC-----------------------------------CCCCTTEEEEEEECCSS------------------
T ss_pred -----EEEec-----------------------------------CCCCcccEEEEEeCCCc------------------
Confidence 00000 00011111111110000
Q ss_pred HhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHH
Q 044798 704 ILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLI 783 (1231)
Q Consensus 704 il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~ 783 (1231)
...++..|.++|... ..+.++||||.++...+.|...|.
T Consensus 250 ----------------------------------------~~~~~~~l~~~l~~~-~~~~~~IVf~~sr~~~e~la~~L~ 288 (591)
T 2v1x_A 250 ----------------------------------------TEDFIEDIVKLINGR-YKGQSGIIYCFSQKDSEQVTVSLQ 288 (591)
T ss_dssp ----------------------------------------HHHHHHHHHHHHTTT-TTTCEEEEECSSHHHHHHHHHHHH
T ss_pred ----------------------------------------HHHHHHHHHHHHHHh-ccCCCeEEEeCcHHHHHHHHHHHH
Confidence 011222233333221 146799999999999999999999
Q ss_pred HcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCccc
Q 044798 784 ASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQD 863 (1231)
Q Consensus 784 ~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~ 863 (1231)
..|+.+..+||.++..+|..+++.|.++ .+.| |++|.++|+|||++.++.||+|++|+++..|.|++||++|.|+...
T Consensus 289 ~~g~~~~~~h~~l~~~~R~~~~~~F~~g-~~~V-lVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~ 366 (591)
T 2v1x_A 289 NLGIHAGAYHANLEPEDKTTVHRKWSAN-EIQV-VVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRDDMKAD 366 (591)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHHHTT-SSSE-EEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTTSSCEE
T ss_pred HCCCCEEEecCCCCHHHHHHHHHHHHcC-CCeE-EEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcCCCCce
Confidence 9999999999999999999999999987 4454 7899999999999999999999999999999999999999998766
Q ss_pred EEEE
Q 044798 864 VTVY 867 (1231)
Q Consensus 864 V~VY 867 (1231)
+.+|
T Consensus 367 ~i~l 370 (591)
T 2v1x_A 367 CILY 370 (591)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 33
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.93 E-value=8.8e-27 Score=278.99 Aligned_cols=323 Identities=18% Similarity=0.220 Sum_probs=112.1
Q ss_pred ccCCcccChhhh--------hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhh-cCCCCcEEEEeC
Q 044798 388 LEGGLKIPESIF--------NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF-SNMYKPSIVVCP 458 (1231)
Q Consensus 388 ~~~~~~iP~~i~--------~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~-s~~~kpvLIV~P 458 (1231)
.+..+.+++.+. ..++|+|..++..++. ..+...|+..+||+|||++++..+..... ......+|||||
T Consensus 93 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~--~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~P 170 (479)
T 3fmp_B 93 SFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSP 170 (479)
T ss_dssp CSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTS--BSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECS
T ss_pred CHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHc--CCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeC
Confidence 345566777764 3578999999988843 23477899999999999986554443322 233348999999
Q ss_pred C-cchHHHHHHHHHH---cCCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcC
Q 044798 459 V-TLLRQWKREAEKW---YPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRS 534 (1231)
Q Consensus 459 ~-sLl~QW~~E~~kw---~p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~ 534 (1231)
. .|..||.+.+.++ ++.+.+.+..+...... ....
T Consensus 171 t~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~ 209 (479)
T 3fmp_B 171 TYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-----------------------------------------GQKI 209 (479)
T ss_dssp SHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCT-----------------------------------------TCCC
T ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccc-----------------------------------------cccC
Confidence 6 7888887776665 45667666654332100 0012
Q ss_pred CCCEEEeCHHHHHHHHhh---hhcCCccEEEEeCCcccCCcc---hHHHHHHHhcc-cccEEEecccCccCChHHHHHhh
Q 044798 535 ESGLLITTYEQLRLLGEK---LLDVEWGYAVLDEGHRIRNPN---AEISLVCKQLQ-TVHRIIMTGAPIQNKLSELWSLF 607 (1231)
Q Consensus 535 ~~~VvItTYe~Lr~~~~~---L~~~~wd~VILDEAH~IKN~~---Sk~skalk~L~-t~~RllLTGTPiqNnl~EL~SLl 607 (1231)
..+|+|+|++.+...... +....+++|||||+|++.... ......+..+. ....+++||||-. +++.+.
T Consensus 210 ~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~----~~~~~~ 285 (479)
T 3fmp_B 210 SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFED----SVWKFA 285 (479)
T ss_dssp CCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCH----HHHHHH
T ss_pred CCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCH----HHHHHH
Confidence 347999999999776633 333578999999999885422 12223333333 3456889999843 222211
Q ss_pred hhhcCCCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHH
Q 044798 608 DFVFPGKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEE 687 (1231)
Q Consensus 608 ~FL~P~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~ 687 (1231)
... +|... .+.+. ..
T Consensus 286 ~~~-------------------------------------------------------------~~~~~--~i~~~--~~ 300 (479)
T 3fmp_B 286 QKV-------------------------------------------------------------VPDPN--VIKLK--RE 300 (479)
T ss_dssp HHH-------------------------------------------------------------SSSEE--EEEEC----
T ss_pred HHH-------------------------------------------------------------cCCCe--EEecc--cc
Confidence 111 11110 01110 00
Q ss_pred HHHHHHHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEE
Q 044798 688 QRAVYRAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLL 767 (1231)
Q Consensus 688 Qr~lY~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLV 767 (1231)
.... . .+......|+ ....|...|..++... .+.++||
T Consensus 301 ~~~~-~--------------------~~~~~~~~~~-------------------~~~~~~~~l~~~~~~~--~~~~~lv 338 (479)
T 3fmp_B 301 EETL-D--------------------TIKQYYVLCS-------------------SRDEKFQALCNLYGAI--TIAQAMI 338 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCc-C--------------------CceEEEEEeC-------------------CHHHHHHHHHHHHhhc--cCCceEE
Confidence 0000 0 0000000000 0122444444554433 2458999
Q ss_pred EeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCc--
Q 044798 768 FAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNP-- 845 (1231)
Q Consensus 768 FSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNP-- 845 (1231)
||++....+.|...|...|+.+..++|.++..+|..+++.|.++. +. +|++|+++++|||+++++.||+||+||++
T Consensus 339 F~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~-~~-iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~ 416 (479)
T 3fmp_B 339 FCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGK-EK-VLVTTNVCARGIDVEQVSVVINFDLPVDKDG 416 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCC-Cc-EEEEccccccCCccccCCEEEEecCCCCCcc
Confidence 999999999999999999999999999999999999999999874 44 57899999999999999999999999876
Q ss_pred ----chHHHHHHhHHhhCCcccEEE
Q 044798 846 ----STDVQARERAWRIGQKQDVTV 866 (1231)
Q Consensus 846 ----s~d~QAigRa~RiGQkk~V~V 866 (1231)
..|.|++||++|.|+...+.+
T Consensus 417 ~~s~~~~~Qr~GRagR~g~~G~~i~ 441 (479)
T 3fmp_B 417 NPDNETYLHRIGRTGRFGKRGLAVN 441 (479)
T ss_dssp -------------------------
T ss_pred CCCHHHHHHHhcccccCCCCceEEE
Confidence 689999999999997655443
No 34
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.93 E-value=7.3e-25 Score=287.55 Aligned_cols=308 Identities=16% Similarity=0.179 Sum_probs=215.7
Q ss_pred hchHHHHHHHHHHHHHHcCCC--cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCC--
Q 044798 401 NLFDYQKVGVQWLWELHCQRA--GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPS-- 475 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~--GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~-- 475 (1231)
.++|||.+++.++......+. .+|++++||+|||++++..+..... ..+.+|||||. .|+.||.++|.++++.
T Consensus 603 ~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~--~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~ 680 (1151)
T 2eyq_A 603 ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--NHKQVAVLVPTTLLAQQHYDNFRDRFANWP 680 (1151)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--TTCEEEEECSSHHHHHHHHHHHHHHSTTTT
T ss_pred CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--hCCeEEEEechHHHHHHHHHHHHHHhhcCC
Confidence 369999999999987655554 8999999999999987754443332 34689999997 5788999999999875
Q ss_pred CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhc
Q 044798 476 FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLD 555 (1231)
Q Consensus 476 lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~ 555 (1231)
.++.++++....... ............+|+|+|+..+.. .+..
T Consensus 681 i~v~~l~~~~~~~~~----------------------------------~~~~~~l~~g~~dIvV~T~~ll~~---~~~~ 723 (1151)
T 2eyq_A 681 VRIEMISRFRSAKEQ----------------------------------TQILAEVAEGKIDILIGTHKLLQS---DVKF 723 (1151)
T ss_dssp CCEEEESTTSCHHHH----------------------------------HHHHHHHHTTCCSEEEECTHHHHS---CCCC
T ss_pred CeEEEEeCCCCHHHH----------------------------------HHHHHHHhcCCCCEEEECHHHHhC---Cccc
Confidence 566666654322111 112223333457999999987743 2344
Q ss_pred CCccEEEEeCCcccCCcchHHHHHHHhccc-ccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCC
Q 044798 556 VEWGYAVLDEGHRIRNPNAEISLVCKQLQT-VHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGY 634 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN~~Sk~skalk~L~t-~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~ 634 (1231)
.+|++||+||+|++ .......++.+.. .+.++|||||+.+.+...+..+. .+.
T Consensus 724 ~~l~lvIiDEaH~~---g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~------------------~~~----- 777 (1151)
T 2eyq_A 724 KDLGLLIVDEEHRF---GVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMR------------------DLS----- 777 (1151)
T ss_dssp SSEEEEEEESGGGS---CHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTS------------------EEE-----
T ss_pred cccceEEEechHhc---ChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCC------------------Cce-----
Confidence 57899999999997 3455566666654 56789999998765433221100 000
Q ss_pred CCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCc--eEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchh
Q 044798 635 ANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKK--TEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSL 712 (1231)
Q Consensus 635 ~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K--~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l 712 (1231)
+...-|.. ...........
T Consensus 778 ---------------------------------~i~~~~~~r~~i~~~~~~~~~-------------------------- 798 (1151)
T 2eyq_A 778 ---------------------------------IIATPPARRLAVKTFVREYDS-------------------------- 798 (1151)
T ss_dssp ---------------------------------ECCCCCCBCBCEEEEEEECCH--------------------------
T ss_pred ---------------------------------EEecCCCCccccEEEEecCCH--------------------------
Confidence 00000110 01111111111
Q ss_pred HHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc--CCcEE
Q 044798 713 YGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS--GYEYR 790 (1231)
Q Consensus 713 ~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~--Gi~~~ 790 (1231)
..+...++.. ...|.+++|||+.+..++.+...|... ++.+.
T Consensus 799 -----------------------------------~~i~~~il~~-l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~ 842 (1151)
T 2eyq_A 799 -----------------------------------MVVREAILRE-ILRGGQVYYLYNDVENIQKAAERLAELVPEARIA 842 (1151)
T ss_dssp -----------------------------------HHHHHHHHHH-HTTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEE
T ss_pred -----------------------------------HHHHHHHHHH-HhcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEE
Confidence 0111122222 235779999999999999999999987 89999
Q ss_pred EEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCC-CCCcchHHHHHHhHHhhCCcccEEEEEE
Q 044798 791 RMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDP-DWNPSTDVQARERAWRIGQKQDVTVYRL 869 (1231)
Q Consensus 791 rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp-~WNPs~d~QAigRa~RiGQkk~V~VYRL 869 (1231)
.+||.|+..+|..+++.|.++ .+.| |++|.++++|||+++++.||++++ .|++..+.|++||++|.|+.. ++|.+
T Consensus 843 ~lhg~~~~~eR~~il~~F~~g-~~~V-LVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g--~~~ll 918 (1151)
T 2eyq_A 843 IGHGQMRERELERVMNDFHHQ-RFNV-LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQA--YAWLL 918 (1151)
T ss_dssp ECCSSCCHHHHHHHHHHHHTT-SCCE-EEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTBCE--EEEEE
T ss_pred EEeCCCCHHHHHHHHHHHHcC-CCcE-EEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCCce--EEEEE
Confidence 999999999999999999987 4554 778999999999999999999998 699999999999999999654 44555
Q ss_pred EeC
Q 044798 870 ITR 872 (1231)
Q Consensus 870 it~ 872 (1231)
+..
T Consensus 919 ~~~ 921 (1151)
T 2eyq_A 919 TPH 921 (1151)
T ss_dssp ECC
T ss_pred ECC
Confidence 554
No 35
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.92 E-value=1.8e-25 Score=270.53 Aligned_cols=312 Identities=15% Similarity=0.141 Sum_probs=188.8
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhh-cCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeE
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF-SNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHV 478 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~-s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV 478 (1231)
.|+|||.+++..+.. ..+..+|+...||+|||++++..+..... ....+++|||||. .|+.||.++|.++++...+
T Consensus 141 ~p~~~Q~~ai~~i~~--~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~ 218 (508)
T 3fho_A 141 XXXKIQEKALPLLLS--NPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEV 218 (508)
T ss_dssp ECCCTTSSSHHHHHC--SSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSC
T ss_pred CcHHHHHHHHHHHHc--CCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCe
Confidence 589999999987743 12478999999999999986655554433 3335689999996 6899999999999865443
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--hhcC
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLDV 556 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~--L~~~ 556 (1231)
.+..+.+... ........+|+|+|++.+...... +...
T Consensus 219 ~~~~~~~~~~----------------------------------------~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~ 258 (508)
T 3fho_A 219 KTAFGIKDSV----------------------------------------PKGAKIDAQIVIGTPGTVMDLMKRRQLDAR 258 (508)
T ss_dssp CEEC--------------------------------------------------CCCCSEEEECHHHHHHHHHTTCSCCT
T ss_pred eEEEEeCCcc----------------------------------------cccccCCCCEEEECHHHHHHHHHcCCcccc
Confidence 3332221100 000112468999999998765432 3345
Q ss_pred CccEEEEeCCcccCCc---chHHHHHHHhccc-ccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccC
Q 044798 557 EWGYAVLDEGHRIRNP---NAEISLVCKQLQT-VHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVG 632 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~---~Sk~skalk~L~t-~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g 632 (1231)
.+++||+||+|++... .......+..+.. ...++|||||-. .+.++.. .+.+ .+....
T Consensus 259 ~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~-~~~~~~~---~~~~--------------~~~~i~ 320 (508)
T 3fho_A 259 DIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSE-RVEKYAE---RFAP--------------NANEIR 320 (508)
T ss_dssp TCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCST-HHHHHHH---HHST--------------TCEEEC
T ss_pred CCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCH-HHHHHHH---HhcC--------------CCeEEE
Confidence 6899999999998652 2333344444543 445889999842 2222211 1100 000000
Q ss_pred CCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchh
Q 044798 633 GYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSL 712 (1231)
Q Consensus 633 ~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l 712 (1231)
..... ...+......+.+.
T Consensus 321 ~~~~~--------------------------------~~~~~~~~~~~~~~----------------------------- 339 (508)
T 3fho_A 321 LKTEE--------------------------------LSVEGIKQLYMDCQ----------------------------- 339 (508)
T ss_dssp CCCCC------------------------------------CCCCEEEEC------------------------------
T ss_pred ecccc--------------------------------CCcccceEEEEECC-----------------------------
Confidence 00000 00000011111111
Q ss_pred HHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEE
Q 044798 713 YGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRM 792 (1231)
Q Consensus 713 ~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rI 792 (1231)
....|...+..++... .+.++||||+++..++.+...|...|+.+..+
T Consensus 340 ------------------------------~~~~k~~~l~~ll~~~--~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~ 387 (508)
T 3fho_A 340 ------------------------------SEEHKYNVLVELYGLL--TIGQSIIFCKKKDTAEEIARRMTADGHTVACL 387 (508)
T ss_dssp -------------------------------CHHHHHHHHHHHC-----CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEE
T ss_pred ------------------------------chHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEE
Confidence 1123444455555443 35699999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCC------CCcchHHHHHHhHHhhCCcccEEE
Q 044798 793 DGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPD------WNPSTDVQARERAWRIGQKQDVTV 866 (1231)
Q Consensus 793 dGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~------WNPs~d~QAigRa~RiGQkk~V~V 866 (1231)
+|.++..+|..+++.|+++. +. +|++|+++++|+|++.++.||+||++ +++..+.|++||++|.|+...+.+
T Consensus 388 hg~~~~~~R~~il~~f~~g~-~~-VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~ 465 (508)
T 3fho_A 388 TGNLEGAQRDAIMDSFRVGT-SK-VLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSIN 465 (508)
T ss_dssp C-----CTTGGGTHHHHSSS-CC-CCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEE
T ss_pred eCCCCHHHHHHHHHHHHCCC-Ce-EEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEE
Confidence 99999999999999999874 44 57899999999999999999999999 789999999999999997665555
Q ss_pred E
Q 044798 867 Y 867 (1231)
Q Consensus 867 Y 867 (1231)
|
T Consensus 466 l 466 (508)
T 3fho_A 466 F 466 (508)
T ss_dssp E
T ss_pred E
Confidence 4
No 36
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.1e-23 Score=275.24 Aligned_cols=362 Identities=15% Similarity=0.156 Sum_probs=216.4
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeE
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHV 478 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV 478 (1231)
..|+|||.+++..+ ..+...|++.+||+|||++++..+..... ..+.+||++|. .|..||.++|.++++ .+
T Consensus 183 f~ltp~Q~~AI~~i----~~g~dvLV~ApTGSGKTlva~l~i~~~l~--~g~rvlvl~PtraLa~Q~~~~l~~~~~--~V 254 (1108)
T 3l9o_A 183 FTLDPFQDTAISCI----DRGESVLVSAHTSAGKTVVAEYAIAQSLK--NKQRVIYTSPIKALSNQKYRELLAEFG--DV 254 (1108)
T ss_dssp SCCCHHHHHHHHHH----TTTCCEEEECCSSSHHHHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHHTS--SE
T ss_pred CCCCHHHHHHHHHH----HcCCCEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEcCcHHHHHHHHHHHHHHhC--Cc
Confidence 35899999999887 56788999999999999987666555443 34689999996 788999999999987 56
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--hhcC
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLDV 556 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~--L~~~ 556 (1231)
.+++|... .....+|+|+|++.|...... ....
T Consensus 255 glltGd~~---------------------------------------------~~~~~~IlV~Tpe~L~~~L~~~~~~l~ 289 (1108)
T 3l9o_A 255 GLMTGDIT---------------------------------------------INPDAGCLVMTTEILRSMLYRGSEVMR 289 (1108)
T ss_dssp EEECSSCB---------------------------------------------CCCSCSEEEEEHHHHHHHHHHCSSHHH
T ss_pred cEEeCccc---------------------------------------------cCCCCCEEEeChHHHHHHHHcCccccc
Confidence 56655332 112358999999999775532 1123
Q ss_pred CccEEEEeCCcccCCcc--hHHHHHHHhcc-cccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCC
Q 044798 557 EWGYAVLDEGHRIRNPN--AEISLVCKQLQ-TVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGG 633 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~~--Sk~skalk~L~-t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~ 633 (1231)
.+++||+||||++.+.. ......+..+. ..+.++|||| +.|. .++..++..+..... ++....
T Consensus 290 ~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~qvl~lSAT-ipn~-~e~a~~l~~~~~~~~------------~vi~~~ 355 (1108)
T 3l9o_A 290 EVAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSAT-IPNA-MEFAEWICKIHSQPC------------HIVYTN 355 (1108)
T ss_dssp HEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTSEEEEEECS-CSSC-HHHHHHHHHHTCSCE------------EEEEEC
T ss_pred cCCEEEEhhhhhccccchHHHHHHHHHhcCCCceEEEEcCC-CCCH-HHHHHHHHhhcCCCe------------EEEecC
Confidence 58899999999997643 23334455554 3456889999 4443 333333322211100 000000
Q ss_pred CCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchhH
Q 044798 634 YANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLY 713 (1231)
Q Consensus 634 ~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~ 713 (1231)
+... +. ..+++ ..+......+.-.........|...+.......
T Consensus 356 ~rp~-pl----------------~~~~~---------~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~---------- 399 (1108)
T 3l9o_A 356 FRPT-PL----------------QHYLF---------PAHGDGIYLVVDEKSTFREENFQKAMASISNQI---------- 399 (1108)
T ss_dssp CCSS-CE----------------EEEEE---------ETTSSCCEEEEETTTEECHHHHHHHHTTC--------------
T ss_pred CCcc-cc----------------eEEEe---------ecCCcceeeeeccccchhhhhHHHHHHHHHhhh----------
Confidence 0000 00 00000 000000111111111111112222111100000
Q ss_pred HHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhc-CCeEEEEeccHHHHHHHHHHHHHcCCc----
Q 044798 714 GIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQ-GHRVLLFAQTQQMLDILESFLIASGYE---- 788 (1231)
Q Consensus 714 ~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~-g~KVLVFSQ~~~~LdiLe~~L~~~Gi~---- 788 (1231)
...+.........................+..++..+... +.++||||.++..++.+...|...|+.
T Consensus 400 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e 471 (1108)
T 3l9o_A 400 --------GDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDE 471 (1108)
T ss_dssp ---------------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC--
T ss_pred --------cccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHH
Confidence 0000000000000000000000000133344555554443 569999999999999998888653332
Q ss_pred -----------------------------------EEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCC
Q 044798 789 -----------------------------------YRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGA 833 (1231)
Q Consensus 789 -----------------------------------~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~A 833 (1231)
+..+||.++..+|..+++.|.++ .+.| |++|.++++|||++++
T Consensus 472 ~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G-~ikV-LVAT~vla~GIDiP~v 549 (1108)
T 3l9o_A 472 KEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG-FLKV-LFATETFSIGLNMPAK 549 (1108)
T ss_dssp --CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHT-CCCE-EEEESCCCSCCCC--C
T ss_pred HHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCC-CCeE-EEECcHHhcCCCCCCc
Confidence 78899999999999999999987 4555 7889999999999999
Q ss_pred CEEEEcCCCCCcch--------HHHHHHhHHhhCCcccEEEEEEEeCCC
Q 044798 834 NRVIIFDPDWNPST--------DVQARERAWRIGQKQDVTVYRLITRGT 874 (1231)
Q Consensus 834 nrVIi~Dp~WNPs~--------d~QAigRa~RiGQkk~V~VYRLit~gT 874 (1231)
+.||.++.+|++.. |.|++||++|.|+....++|.++..+.
T Consensus 550 ~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 550 TVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKM 598 (1108)
T ss_dssp EEEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCC
T ss_pred eEEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCc
Confidence 99999998887765 999999999999999999998888774
No 37
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.4e-23 Score=272.00 Aligned_cols=341 Identities=16% Similarity=0.157 Sum_probs=217.4
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeEE
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHVE 479 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV~ 479 (1231)
.|+|||.+++.++. .+.++|++.+||+|||+++...+..... ..+++||+||. .|..||.++|.++++ .+.
T Consensus 86 ~L~~~Q~eai~~l~----~g~~vLV~apTGSGKTlva~lai~~~l~--~g~rvL~l~PtkaLa~Q~~~~l~~~~~--~vg 157 (1010)
T 2xgj_A 86 TLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLK--NKQRVIYTSPIKALSNQKYRELLAEFG--DVG 157 (1010)
T ss_dssp CCCHHHHHHHHHHH----HTCEEEEECCTTSCHHHHHHHHHHHHHH--TTCEEEEEESSHHHHHHHHHHHHHHHS--CEE
T ss_pred CCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHhc--cCCeEEEECChHHHHHHHHHHHHHHhC--CEE
Confidence 58999999999873 4678999999999999987654444333 34789999996 899999999999987 566
Q ss_pred EEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--hhcCC
Q 044798 480 LLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLDVE 557 (1231)
Q Consensus 480 il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~--L~~~~ 557 (1231)
+++|.... ....+|+|+|++.++..... .....
T Consensus 158 lltGd~~~---------------------------------------------~~~~~IvV~Tpe~L~~~L~~~~~~l~~ 192 (1010)
T 2xgj_A 158 LMTGDITI---------------------------------------------NPDAGCLVMTTEILRSMLYRGSEVMRE 192 (1010)
T ss_dssp EECSSCEE---------------------------------------------CTTCSEEEEEHHHHHHHHHHTCTTGGG
T ss_pred EEeCCCcc---------------------------------------------CCCCCEEEEcHHHHHHHHHcCcchhhc
Confidence 66654320 11347999999999765432 23347
Q ss_pred ccEEEEeCCcccCCcc--hHHHHHHHhcc-cccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCC
Q 044798 558 WGYAVLDEGHRIRNPN--AEISLVCKQLQ-TVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGY 634 (1231)
Q Consensus 558 wd~VILDEAH~IKN~~--Sk~skalk~L~-t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~ 634 (1231)
|++||+||+|++.+.. ......+..+. ..+.++||||+ .| ..++-..+..+. ..|+..-
T Consensus 193 l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~~il~LSATi-~n-~~e~a~~l~~~~--------------~~~~~vi-- 254 (1010)
T 2xgj_A 193 VAWVIFDEVHYMRDKERGVVWEETIILLPDKVRYVFLSATI-PN-AMEFAEWICKIH--------------SQPCHIV-- 254 (1010)
T ss_dssp EEEEEEETGGGGGCTTTHHHHHHHHHHSCTTCEEEEEECCC-TT-HHHHHHHHHHHH--------------TSCEEEE--
T ss_pred CCEEEEechhhhcccchhHHHHHHHHhcCCCCeEEEEcCCC-CC-HHHHHHHHHhhc--------------CCCeEEE--
Confidence 8999999999998763 33344455554 45668899995 23 333333222110 0010000
Q ss_pred CCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEe----------cC-CHHHHHHHHHHHhhHHHHH
Q 044798 635 ANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFC----------SL-TEEQRAVYRAFLASSEVEQ 703 (1231)
Q Consensus 635 ~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~----------~L-t~~Qr~lY~~~l~s~~~~~ 703 (1231)
....-|....+.++. .. .......|...+..
T Consensus 255 ---------------------------------~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 296 (1010)
T 2xgj_A 255 ---------------------------------YTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMAS----- 296 (1010)
T ss_dssp ---------------------------------EECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHT-----
T ss_pred ---------------------------------ecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHH-----
Confidence 000001111111111 00 00000011111100
Q ss_pred HhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchH--------HHHHHHHHHHHHhc-CCeEEEEeccHHH
Q 044798 704 ILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEK--------MKVVAQVLKVWKDQ-GHRVLLFAQTQQM 774 (1231)
Q Consensus 704 il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~K--------l~~L~eLLk~~~~~-g~KVLVFSQ~~~~ 774 (1231)
+... ..+.|.-. .+ .+......| ...+..++..+... +.++||||.++..
T Consensus 297 -l~~~------------~~~~~~~~-------~~-~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~ 355 (1010)
T 2xgj_A 297 -ISNQ------------IGDDPNST-------DS-RGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRD 355 (1010)
T ss_dssp -CC--------------------------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHH
T ss_pred -Hhhh------------hccccccc-------cc-ccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHH
Confidence 0000 00000000 00 000000000 22344455544443 4599999999999
Q ss_pred HHHHHHHHHHcCCc---------------------------------------EEEEeCCCCHHHHHHHHHHHhCCCCce
Q 044798 775 LDILESFLIASGYE---------------------------------------YRRMDGLTPVKQRMALIDEYNNSSDVF 815 (1231)
Q Consensus 775 LdiLe~~L~~~Gi~---------------------------------------~~rIdGsts~~eRq~iId~Fn~d~~i~ 815 (1231)
++.+...|...|+. +..+||+++..+|..+++.|.++ .++
T Consensus 356 ~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G-~ik 434 (1010)
T 2xgj_A 356 CEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG-FLK 434 (1010)
T ss_dssp HHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTT-CCS
T ss_pred HHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcC-CCc
Confidence 99998888765442 78899999999999999999987 555
Q ss_pred EEEEeccccccccCCCCCCEEEE----cCC----CCCcchHHHHHHhHHhhCCcccEEEEEEEeCC
Q 044798 816 IFILTTKVGGLGTNLTGANRVII----FDP----DWNPSTDVQARERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 816 VfLlSTkvGg~GLNLt~AnrVIi----~Dp----~WNPs~d~QAigRa~RiGQkk~V~VYRLit~g 873 (1231)
| |++|.++++|||+++++.||. ||. ||+|..|.|++||++|.|+....++|.|+..+
T Consensus 435 V-LVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 435 V-LFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp E-EEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred E-EEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 5 778999999999999999999 999 99999999999999999998889999898866
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.91 E-value=1e-24 Score=274.98 Aligned_cols=307 Identities=17% Similarity=0.210 Sum_probs=205.1
Q ss_pred hchHHHHHHHHHHHHHHcCC--CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcC--C
Q 044798 401 NLFDYQKVGVQWLWELHCQR--AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYP--S 475 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~--~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p--~ 475 (1231)
.|+|+|.+++..+......+ ...|+..+||+|||++++..+......+ ..+|||||. .|..||.++|.+|++ +
T Consensus 368 ~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g--~qvlvlaPtr~La~Q~~~~l~~~~~~~g 445 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG--FQTAFMVPTSILAIQHYRRTVESFSKFN 445 (780)
T ss_dssp CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT--SCEEEECSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC--CeEEEEeCcHHHHHHHHHHHHHHhhhcC
Confidence 58999999999987754443 4789999999999999876665554433 689999997 788899999999986 5
Q ss_pred CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhc
Q 044798 476 FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLD 555 (1231)
Q Consensus 476 lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~ 555 (1231)
+++.+++|........ ...........+|+|+|++.+.. .+..
T Consensus 446 i~v~~l~G~~~~~~r~----------------------------------~~~~~l~~g~~~IvVgT~~ll~~---~~~~ 488 (780)
T 1gm5_A 446 IHVALLIGATTPSEKE----------------------------------KIKSGLRNGQIDVVIGTHALIQE---DVHF 488 (780)
T ss_dssp CCEEECCSSSCHHHHH----------------------------------HHHHHHHSSCCCEEEECTTHHHH---CCCC
T ss_pred ceEEEEeCCCCHHHHH----------------------------------HHHHHHhcCCCCEEEECHHHHhh---hhhc
Confidence 7888888765322111 12223334457999999987754 3444
Q ss_pred CCccEEEEeCCcccCCcchHHHHHHHh-cccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCC
Q 044798 556 VEWGYAVLDEGHRIRNPNAEISLVCKQ-LQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGY 634 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN~~Sk~skalk~-L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~ 634 (1231)
.++++||+||+|++.... ...+.. ....+.++|||||+.+.+...+ | +.+. .
T Consensus 489 ~~l~lVVIDEaHr~g~~q---r~~l~~~~~~~~vL~mSATp~p~tl~~~~----~---g~~~----------~------- 541 (780)
T 1gm5_A 489 KNLGLVIIDEQHRFGVKQ---REALMNKGKMVDTLVMSATPIPRSMALAF----Y---GDLD----------V------- 541 (780)
T ss_dssp SCCCEEEEESCCCC--------CCCCSSSSCCCEEEEESSCCCHHHHHHH----T---CCSS----------C-------
T ss_pred cCCceEEecccchhhHHH---HHHHHHhCCCCCEEEEeCCCCHHHHHHHH----h---CCcc----------e-------
Confidence 578999999999983211 111111 1356789999999875433211 1 0000 0
Q ss_pred CCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchhHH
Q 044798 635 ANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLYG 714 (1231)
Q Consensus 635 ~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~~ 714 (1231)
.+...+|+....+...-..
T Consensus 542 --------------------------------s~i~~~p~~r~~i~~~~~~----------------------------- 560 (780)
T 1gm5_A 542 --------------------------------TVIDEMPPGRKEVQTMLVP----------------------------- 560 (780)
T ss_dssp --------------------------------EEECCCCSSCCCCEECCCC-----------------------------
T ss_pred --------------------------------eeeeccCCCCcceEEEEec-----------------------------
Confidence 0001122211100000000
Q ss_pred HHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccH--------HHHHHHHHHHHH--
Q 044798 715 IDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQ--------QMLDILESFLIA-- 784 (1231)
Q Consensus 715 i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~--------~~LdiLe~~L~~-- 784 (1231)
..+...+.+.+......|++++|||... ..+..+...|..
T Consensus 561 ------------------------------~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~ 610 (780)
T 1gm5_A 561 ------------------------------MDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEV 610 (780)
T ss_dssp ------------------------------SSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSC
T ss_pred ------------------------------cchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhh
Confidence 0111223333443445577888888754 335666677776
Q ss_pred -cCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCC-CcchHHHHHHhHHhhCCcc
Q 044798 785 -SGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDW-NPSTDVQARERAWRIGQKQ 862 (1231)
Q Consensus 785 -~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~W-NPs~d~QAigRa~RiGQkk 862 (1231)
.|+.+..+||.++..+|..+++.|.++ .+.| |++|.++++|||+++++.||++|+++ +.+.+.|++||++|.|+..
T Consensus 611 ~~~~~v~~lHG~m~~~eR~~v~~~F~~G-~~~I-LVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g 688 (780)
T 1gm5_A 611 FPEFKLGLMHGRLSQEEKDRVMLEFAEG-RYDI-LVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQEA 688 (780)
T ss_dssp C---CBCCCCSSSCCSCSHHHHHHHTTT-SSSB-CCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSSTTC
T ss_pred cCCCcEEEEeCCCCHHHHHHHHHHHHCC-CCeE-EEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCCCC
Confidence 478999999999999999999999987 4555 78999999999999999999999984 7899999999999999776
Q ss_pred cEEE
Q 044798 863 DVTV 866 (1231)
Q Consensus 863 ~V~V 866 (1231)
.|++
T Consensus 689 ~~il 692 (780)
T 1gm5_A 689 YCFL 692 (780)
T ss_dssp EEEC
T ss_pred EEEE
Confidence 5444
No 39
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.89 E-value=1.6e-21 Score=245.22 Aligned_cols=326 Identities=18% Similarity=0.176 Sum_probs=210.2
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcC-CCeE
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYP-SFHV 478 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p-~lrV 478 (1231)
.|+|+|.+++..++ ..+...|++.+||+|||+++..++...... ..+.+|||+|. .++.||..++.++.+ +.++
T Consensus 30 ~l~~~Q~~~i~~~~---~~~~~~lv~apTGsGKT~~~~l~il~~~~~-~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v 105 (715)
T 2va8_A 30 KLNPPQTEAVKKGL---LEGNRLLLTSPTGSGKTLIAEMGIISFLLK-NGGKAIYVTPLRALTNEKYLTFKDWELIGFKV 105 (715)
T ss_dssp BCCHHHHHHHHTTT---TTTCCEEEECCTTSCHHHHHHHHHHHHHHH-SCSEEEEECSCHHHHHHHHHHHGGGGGGTCCE
T ss_pred CCCHHHHHHHHHHh---cCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-CCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEE
Confidence 58999999998632 357889999999999999986555443321 23699999997 589999999965543 5666
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--hhcC
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLDV 556 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~--L~~~ 556 (1231)
..++|.... . ..+ . ...+|+|+|++.+...... ....
T Consensus 106 ~~~~G~~~~--------------------------------~-~~~-------~-~~~~Iiv~Tpe~l~~~~~~~~~~l~ 144 (715)
T 2va8_A 106 AMTSGDYDT--------------------------------D-DAW-------L-KNYDIIITTYEKLDSLWRHRPEWLN 144 (715)
T ss_dssp EECCSCSSS--------------------------------C-CGG-------G-GGCSEEEECHHHHHHHHHHCCGGGG
T ss_pred EEEeCCCCC--------------------------------c-hhh-------c-CCCCEEEEcHHHHHHHHhCChhHhh
Confidence 666553210 0 000 1 2468999999998765432 1123
Q ss_pred CccEEEEeCCcccCCc--chHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhh-ccccccCC
Q 044798 557 EWGYAVLDEGHRIRNP--NAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEF-AVPITVGG 633 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~--~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f-~~pI~~g~ 633 (1231)
.+++||+||+|.+.+. .......+..++..+.++|||||- |..++.. |+.... |...+ ..|+....
T Consensus 145 ~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~ii~lSATl~--n~~~~~~---~l~~~~------~~~~~r~~~l~~~~ 213 (715)
T 2va8_A 145 EVNYFVLDELHYLNDPERGPVVESVTIRAKRRNLLALSATIS--NYKQIAK---WLGAEP------VATNWRPVPLIEGV 213 (715)
T ss_dssp GEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEEEEEESCCT--THHHHHH---HHTCEE------EECCCCSSCEEEEE
T ss_pred ccCEEEEechhhcCCcccchHHHHHHHhcccCcEEEEcCCCC--CHHHHHH---HhCCCc------cCCCCCCCCceEEE
Confidence 6789999999998752 333444555666778899999984 2344333 221100 00000 00000000
Q ss_pred CCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchhH
Q 044798 634 YANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSLY 713 (1231)
Q Consensus 634 ~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l~ 713 (1231)
+. ...+.....+.+...+. ..
T Consensus 214 ~~----------------------------------~~~~~~~~~~~~~~~~~-----------------------~~-- 234 (715)
T 2va8_A 214 IY----------------------------------PERKKKEYNVIFKDNTT-----------------------KK-- 234 (715)
T ss_dssp EE----------------------------------ECSSTTEEEEEETTSCE-----------------------EE--
T ss_pred Ee----------------------------------cCCcccceeeecCcchh-----------------------hh--
Confidence 00 00000000111110000 00
Q ss_pred HHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcC-------
Q 044798 714 GIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASG------- 786 (1231)
Q Consensus 714 ~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~G------- 786 (1231)
+ .....+...+.++ ...+.++|||+.++...+.+...|....
T Consensus 235 -------------------------~--~~~~~~~~~~~~~----~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~ 283 (715)
T 2va8_A 235 -------------------------V--HGDDAIIAYTLDS----LSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDE 283 (715)
T ss_dssp -------------------------E--ESSSHHHHHHHHH----HTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCH
T ss_pred -------------------------c--ccchHHHHHHHHH----HhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCCh
Confidence 0 0012233333333 3467899999999999999988887542
Q ss_pred -----------------------------CcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEE
Q 044798 787 -----------------------------YEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVI 837 (1231)
Q Consensus 787 -----------------------------i~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVI 837 (1231)
+.+..+||+++..+|..+.+.|.++ .++| |++|.+++.|||+++++.||
T Consensus 284 ~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g-~~~v-lvaT~~l~~Gidip~~~~VI 361 (715)
T 2va8_A 284 NALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQR-KIKV-IVATPTLAAGVNLPARTVII 361 (715)
T ss_dssp HHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTT-CSCE-EEECGGGGGSSCCCBSEEEE
T ss_pred HHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcC-CCeE-EEEChHHhcccCCCceEEEE
Confidence 3488999999999999999999987 4555 77899999999999999999
Q ss_pred E----cC-------CCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCC
Q 044798 838 I----FD-------PDWNPSTDVQARERAWRIGQKQDVTVYRLITRGT 874 (1231)
Q Consensus 838 i----~D-------p~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gT 874 (1231)
. || .|+++..+.|++||++|.|+..+-.+|+|++...
T Consensus 362 ~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 362 GDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp CCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred eCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 8 99 8999999999999999999998999999987765
No 40
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.89 E-value=7.2e-22 Score=248.60 Aligned_cols=320 Identities=15% Similarity=0.107 Sum_probs=214.4
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHH-HHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcC-CCe
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFL-GALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYP-SFH 477 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L-~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p-~lr 477 (1231)
.|+|||.+++..++ ..+..+|++.+||+|||+++...+ ..+... .+.+|||+|. .++.||.+++.+|.+ +.+
T Consensus 23 ~l~~~Q~~~i~~~~---~~~~~~lv~apTGsGKT~~~~l~il~~~~~~--~~~~l~i~P~raLa~q~~~~~~~l~~~g~~ 97 (720)
T 2zj8_A 23 SFYPPQAEALKSGI---LEGKNALISIPTASGKTLIAEIAMVHRILTQ--GGKAVYIVPLKALAEEKFQEFQDWEKIGLR 97 (720)
T ss_dssp BCCHHHHHHHTTTG---GGTCEEEEECCGGGCHHHHHHHHHHHHHHHH--CSEEEEECSSGGGHHHHHHHTGGGGGGTCC
T ss_pred CCCHHHHHHHHHHh---cCCCcEEEEcCCccHHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHHHHHHHHHHHHhcCCE
Confidence 58999999998621 347789999999999999984444 344323 3689999995 889999999976653 567
Q ss_pred EEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--hhc
Q 044798 478 VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLD 555 (1231)
Q Consensus 478 V~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~--L~~ 555 (1231)
+..++|..... ..+ ....+|+|+|++.+...... ...
T Consensus 98 v~~~~G~~~~~---------------------------------~~~--------~~~~~Iiv~Tpe~l~~~~~~~~~~l 136 (720)
T 2zj8_A 98 VAMATGDYDSK---------------------------------DEW--------LGKYDIIIATAEKFDSLLRHGSSWI 136 (720)
T ss_dssp EEEECSCSSCC---------------------------------CGG--------GGGCSEEEECHHHHHHHHHHTCTTG
T ss_pred EEEecCCCCcc---------------------------------ccc--------cCCCCEEEECHHHHHHHHHcChhhh
Confidence 77777632100 000 12468999999999665432 112
Q ss_pred CCccEEEEeCCcccCC--cchHHHHHHHhcc-cccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccC
Q 044798 556 VEWGYAVLDEGHRIRN--PNAEISLVCKQLQ-TVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVG 632 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN--~~Sk~skalk~L~-t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g 632 (1231)
..+++||+||+|.+.+ ....+...+..++ ..+.++||||+- +..++-. |+.. ++...
T Consensus 137 ~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ii~lSATl~--n~~~~~~---~l~~---------------~~~~~ 196 (720)
T 2zj8_A 137 KDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQIIGLSATIG--NPEELAE---WLNA---------------ELIVS 196 (720)
T ss_dssp GGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBEEEEEECCCS--CHHHHHH---HTTE---------------EEEEC
T ss_pred hcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCeEEEEcCCcC--CHHHHHH---HhCC---------------cccCC
Confidence 3678999999999975 3333444555554 466788999974 2444333 2211 00000
Q ss_pred CCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCcchh
Q 044798 633 GYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSRNSL 712 (1231)
Q Consensus 633 ~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~~~l 712 (1231)
. .-|-.....++.... ... ..+..
T Consensus 197 ~-------------------------------------~rp~~l~~~~~~~~~----------~~~------~~~~~--- 220 (720)
T 2zj8_A 197 D-------------------------------------WRPVKLRRGVFYQGF----------VTW------EDGSI--- 220 (720)
T ss_dssp C-------------------------------------CCSSEEEEEEEETTE----------EEE------TTSCE---
T ss_pred C-------------------------------------CCCCcceEEEEeCCe----------eec------cccch---
Confidence 0 001111111111000 000 00000
Q ss_pred HHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc-------
Q 044798 713 YGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS------- 785 (1231)
Q Consensus 713 ~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~------- 785 (1231)
.....+...+.+++ ..+.++||||.++...+.+...|...
T Consensus 221 -----------------------------~~~~~~~~~~~~~~----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~ 267 (720)
T 2zj8_A 221 -----------------------------DRFSSWEELVYDAI----RKKKGALIFVNMRRKAERVALELSKKVKSLLTK 267 (720)
T ss_dssp -----------------------------EECSSTTHHHHHHH----HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCH
T ss_pred -----------------------------hhhhHHHHHHHHHH----hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcCh
Confidence 00011223333333 45789999999999998888887653
Q ss_pred -----------C---------------CcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEE-
Q 044798 786 -----------G---------------YEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVII- 838 (1231)
Q Consensus 786 -----------G---------------i~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi- 838 (1231)
+ ..+..+||+++..+|..+.+.|.++ .++| |++|.+++.|||+++++.||.
T Consensus 268 ~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g-~~~v-lvaT~~l~~Gvdip~~~~VI~~ 345 (720)
T 2zj8_A 268 PEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKG-IIKA-VVATPTLSAGINTPAFRVIIRD 345 (720)
T ss_dssp HHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTT-SSCE-EEECSTTGGGCCCCBSEEEECC
T ss_pred hhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCC-CCeE-EEECcHhhccCCCCceEEEEcC
Confidence 1 2488999999999999999999987 4555 778999999999999999988
Q ss_pred ---cC----CCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHHH
Q 044798 839 ---FD----PDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEE 877 (1231)
Q Consensus 839 ---~D----p~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIEE 877 (1231)
|| .|+++..+.|++||++|.|+..+-.+|.|++....+.
T Consensus 346 ~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 391 (720)
T 2zj8_A 346 IWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp SEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHH
T ss_pred CeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHH
Confidence 77 6899999999999999999988889999999887553
No 41
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.89 E-value=5.3e-22 Score=249.15 Aligned_cols=321 Identities=17% Similarity=0.184 Sum_probs=212.9
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcC-CCe
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYP-SFH 477 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p-~lr 477 (1231)
..|+|||.+++..+ ..+..+|++.+||+|||+++..++...... .+++|||+|. .++.||.+++.+|.+ +.+
T Consensus 24 ~~l~~~Q~~~i~~i----~~~~~~lv~apTGsGKT~~~~l~il~~~~~--~~~~l~i~P~r~La~q~~~~~~~~~~~g~~ 97 (702)
T 2p6r_A 24 EELFPPQAEAVEKV----FSGKNLLLAMPTAAGKTLLAEMAMVREAIK--GGKSLYVVPLRALAGEKYESFKKWEKIGLR 97 (702)
T ss_dssp -CCCCCCHHHHHHH----TTCSCEEEECSSHHHHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHHTTTTTTTCC
T ss_pred CCCCHHHHHHHHHH----hCCCcEEEEcCCccHHHHHHHHHHHHHHHh--CCcEEEEeCcHHHHHHHHHHHHHHHhcCCE
Confidence 36899999999886 457889999999999999986555443332 4799999996 589999999976654 567
Q ss_pred EEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhh--hc
Q 044798 478 VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKL--LD 555 (1231)
Q Consensus 478 V~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L--~~ 555 (1231)
+..++|..... . . .....+|+|+|++.+......- ..
T Consensus 98 v~~~~G~~~~~-----------------------------~---~---------~~~~~~Iiv~Tpe~l~~~l~~~~~~l 136 (702)
T 2p6r_A 98 IGISTGDYESR-----------------------------D---E---------HLGDCDIIVTTSEKADSLIRNRASWI 136 (702)
T ss_dssp EEEECSSCBCC-----------------------------S---S---------CSTTCSEEEEEHHHHHHHHHTTCSGG
T ss_pred EEEEeCCCCcc-----------------------------h---h---------hccCCCEEEECHHHHHHHHHcChhHH
Confidence 77766543210 0 0 0124689999999997654331 12
Q ss_pred CCccEEEEeCCcccCC--cchHHHHHHHhc----ccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhcccc
Q 044798 556 VEWGYAVLDEGHRIRN--PNAEISLVCKQL----QTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPI 629 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN--~~Sk~skalk~L----~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI 629 (1231)
..+++||+||+|.+.+ ........+..+ ...+.++||||+- +..++.. |+... +
T Consensus 137 ~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~--n~~~~~~---~l~~~---------------~ 196 (702)
T 2p6r_A 137 KAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAP--NVTEIAE---WLDAD---------------Y 196 (702)
T ss_dssp GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCT--THHHHHH---HTTCE---------------E
T ss_pred hhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCcC--CHHHHHH---HhCCC---------------c
Confidence 3678999999999876 333333333333 3456788999974 2444433 22111 0
Q ss_pred ccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHhhcCc
Q 044798 630 TVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQILDGSR 709 (1231)
Q Consensus 630 ~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il~~~~ 709 (1231)
..... -|-..+..++.... .+ + ..+..
T Consensus 197 ~~~~~-------------------------------------r~~~l~~~~~~~~~-----~~--~---------~~~~~ 223 (702)
T 2p6r_A 197 YVSDW-------------------------------------RPVPLVEGVLCEGT-----LE--L---------FDGAF 223 (702)
T ss_dssp EECCC-------------------------------------CSSCEEEEEECSSE-----EE--E---------EETTE
T ss_pred ccCCC-------------------------------------CCccceEEEeeCCe-----ee--c---------cCcch
Confidence 00000 00000110110000 00 0 00000
Q ss_pred chhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc----
Q 044798 710 NSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS---- 785 (1231)
Q Consensus 710 ~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~---- 785 (1231)
.. + ..-.+...+.++ ...+.++||||.++...+.+...|...
T Consensus 224 ~~-------------~-----------------~~~~~~~~~~~~----~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~ 269 (702)
T 2p6r_A 224 ST-------------S-----------------RRVKFEELVEEC----VAENGGVLVFESTRRGAEKTAVKLSAITAKY 269 (702)
T ss_dssp EE-------------E-----------------EECCHHHHHHHH----HHTTCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred hh-------------h-----------------hhhhHHHHHHHH----HhcCCCEEEEcCCHHHHHHHHHHHHHHHHhh
Confidence 00 0 000022223333 345789999999999988888877642
Q ss_pred --------------------------CCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEE-
Q 044798 786 --------------------------GYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVII- 838 (1231)
Q Consensus 786 --------------------------Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi- 838 (1231)
++.+..++|+++..+|..+.+.|.++ .++| |++|.+++.|||+++++.||.
T Consensus 270 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g-~~~v-lvaT~~l~~Gidip~~~~VI~~ 347 (702)
T 2p6r_A 270 VENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG-NIKV-VVATPTLAAGVNLPARRVIVRS 347 (702)
T ss_dssp CCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT-SCCE-EEECSTTTSSSCCCBSEEEECC
T ss_pred cChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC-CCeE-EEECcHHhccCCCCceEEEEcC
Confidence 23567799999999999999999987 4555 779999999999999999998
Q ss_pred ---cC---CCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCHH
Q 044798 839 ---FD---PDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIE 876 (1231)
Q Consensus 839 ---~D---p~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTIE 876 (1231)
|| +|+++..+.|++||++|.|+..+-.+|+|+.....+
T Consensus 348 ~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 348 LYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE 391 (702)
T ss_dssp SEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHH
T ss_pred ceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHH
Confidence 76 789999999999999999999999999999887754
No 42
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.87 E-value=7.8e-21 Score=246.21 Aligned_cols=373 Identities=17% Similarity=0.129 Sum_probs=222.9
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeEE
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHVE 479 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV~ 479 (1231)
.|.|||.+++..+ ..+..+|+..+||+|||+.++..+..+.. ..+.+|||+|. .|+.||.++|.+++++.++.
T Consensus 39 ~l~~~Q~~aI~~i----l~g~~vlv~apTGsGKTlv~~~~i~~~~~--~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~ 112 (997)
T 4a4z_A 39 ELDTFQKEAVYHL----EQGDSVFVAAHTSAGKTVVAEYAIAMAHR--NMTKTIYTSPIKALSNQKFRDFKETFDDVNIG 112 (997)
T ss_dssp CCCHHHHHHHHHH----HTTCEEEEECCTTSCSHHHHHHHHHHHHH--TTCEEEEEESCGGGHHHHHHHHHTTC--CCEE
T ss_pred CCCHHHHHHHHHH----HcCCCEEEEECCCCcHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEE
Confidence 4899999999876 45678999999999999876554444433 34679999995 89999999999999888888
Q ss_pred EEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--hhcCC
Q 044798 480 LLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK--LLDVE 557 (1231)
Q Consensus 480 il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~--L~~~~ 557 (1231)
+++|.... ....+|+|+|++.+...... +....
T Consensus 113 ~l~G~~~~---------------------------------------------~~~~~IlV~Tpe~L~~~l~~~~~~l~~ 147 (997)
T 4a4z_A 113 LITGDVQI---------------------------------------------NPDANCLIMTTEILRSMLYRGADLIRD 147 (997)
T ss_dssp EECSSCEE---------------------------------------------CTTSSEEEEEHHHHHHHHHHTCSGGGG
T ss_pred EEeCCCcc---------------------------------------------CCCCCEEEECHHHHHHHHHhCchhhcC
Confidence 88865321 12347999999999765532 22346
Q ss_pred ccEEEEeCCcccCCc--chHHHHHHHhccc-ccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhhccccccCCC
Q 044798 558 WGYAVLDEGHRIRNP--NAEISLVCKQLQT-VHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEFAVPITVGGY 634 (1231)
Q Consensus 558 wd~VILDEAH~IKN~--~Sk~skalk~L~t-~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f~~pI~~g~~ 634 (1231)
+++||+||||++.+. .......+..+.. ...++|||||- +..++-..+...... ++..-.
T Consensus 148 l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v~iIlLSAT~~--n~~ef~~~l~~~~~~--------------~~~vi~- 210 (997)
T 4a4z_A 148 VEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVP--NTYEFANWIGRTKQK--------------NIYVIS- 210 (997)
T ss_dssp EEEEEECCTTCCCTTCTTCCHHHHHHHSCTTCEEEEEECCCT--THHHHHHHHHHHHTC--------------CEEEEE-
T ss_pred CCEEEEECcccccccchHHHHHHHHHhcccCCCEEEEcCCCC--ChHHHHHHHhcccCC--------------ceEEEe-
Confidence 899999999999764 3334455555644 55688999973 222333322211100 000000
Q ss_pred CCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEE---------EecCCHHHHHHHHHH---HhhHHHH
Q 044798 635 ANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVL---------FCSLTEEQRAVYRAF---LASSEVE 702 (1231)
Q Consensus 635 ~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv---------~~~Lt~~Qr~lY~~~---l~s~~~~ 702 (1231)
....|...++.+ +-.........|... +......
T Consensus 211 ----------------------------------~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (997)
T 4a4z_A 211 ----------------------------------TPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAK 256 (997)
T ss_dssp ----------------------------------CSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----
T ss_pred ----------------------------------cCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccc
Confidence 000011111111 100000001111110 0000000
Q ss_pred HH---------------------hhcC----cchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHH
Q 044798 703 QI---------------------LDGS----RNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKV 757 (1231)
Q Consensus 703 ~i---------------------l~~~----~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~ 757 (1231)
.. ..+. +..-.+. .-+..+..+........ .-.+.......++..|...|..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~li~~l~~ 333 (997)
T 4a4z_A 257 GAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGG-ANRGGSRGAGAIGSNKR--KFFTQDGPSKKTWPEIVNYLRK 333 (997)
T ss_dssp ---------------------------------------------------------------CCCCTTHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccc-ccccccccccccccccc--ccccccccchhHHHHHHHHHHh
Confidence 00 0000 0000000 00000000000000000 0000011223455566666654
Q ss_pred HHhcCCeEEEEeccHHHHHHHHHHHHHcCC---------------------------------------cEEEEeCCCCH
Q 044798 758 WKDQGHRVLLFAQTQQMLDILESFLIASGY---------------------------------------EYRRMDGLTPV 798 (1231)
Q Consensus 758 ~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi---------------------------------------~~~rIdGsts~ 798 (1231)
....++||||.++...+.+...|...|+ .+..+||.++.
T Consensus 334 --~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~ 411 (997)
T 4a4z_A 334 --RELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLP 411 (997)
T ss_dssp --TTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCH
T ss_pred --CCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCH
Confidence 2356999999999999999988876555 57899999999
Q ss_pred HHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCC---------CcchHHHHHHhHHhhCCcccEEEEEE
Q 044798 799 KQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDW---------NPSTDVQARERAWRIGQKQDVTVYRL 869 (1231)
Q Consensus 799 ~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~W---------NPs~d~QAigRa~RiGQkk~V~VYRL 869 (1231)
.+|..+++.|..+ .+.| |++|.++++|||+++ ..||+++.++ ++..|.|++||++|.|+....++|.+
T Consensus 412 ~~R~~v~~~F~~G-~~kV-LvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l 488 (997)
T 4a4z_A 412 IVKELIEILFSKG-FIKV-LFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVM 488 (997)
T ss_dssp HHHHHHHHHHHTT-CCSE-EEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEE
T ss_pred HHHHHHHHHHHCC-CCcE-EEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEe
Confidence 9999999999988 4555 789999999999999 6666655544 89999999999999999999889888
Q ss_pred EeCCCHHHHHHHHH
Q 044798 870 ITRGTIEEKVYHRQ 883 (1231)
Q Consensus 870 it~gTIEEkIy~rQ 883 (1231)
...+..++..+...
T Consensus 489 ~~~~~~~~~~~~~~ 502 (997)
T 4a4z_A 489 AYNSPLSIATFKEV 502 (997)
T ss_dssp CCSSCCCHHHHHHH
T ss_pred cCCCcchHHHHHHH
Confidence 87666666655543
No 43
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.87 E-value=4.3e-21 Score=250.71 Aligned_cols=278 Identities=17% Similarity=0.174 Sum_probs=189.8
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHc-CCCeE
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWY-PSFHV 478 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~-p~lrV 478 (1231)
.+.|+|..++..+ ..+...|+...+|+|||+.++..+.... .....+|||||. .|+.|+.+.|.++. .++++
T Consensus 78 ~pt~iQ~~ai~~i----l~g~dvlv~ApTGSGKTl~~l~~il~~~--~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v 151 (1104)
T 4ddu_A 78 DLTGYQRLWAKRI----VQGKSFTMVAPTGVGKTTFGMMTALWLA--RKGKKSALVFPTVTLVKQTLERLQKLADEKVKI 151 (1104)
T ss_dssp CCCHHHHHHHHHH----TTTCCEEECCSTTCCHHHHHHHHHHHHH--TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCE
T ss_pred CCCHHHHHHHHHH----HcCCCEEEEeCCCCcHHHHHHHHHHHHH--hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeE
Confidence 4789999999877 4567899999999999996655544443 345789999996 88899999999976 45688
Q ss_pred EEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcCCc
Q 044798 479 ELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEW 558 (1231)
Q Consensus 479 ~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~~w 558 (1231)
.+++|...... +............+|+|+|++.+..+...+....+
T Consensus 152 ~~l~Gg~~~~e----------------------------------r~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l 197 (1104)
T 4ddu_A 152 FGFYSSMKKEE----------------------------------KEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRF 197 (1104)
T ss_dssp EEECTTCCTTH----------------------------------HHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCC
T ss_pred EEEeCCCCHHH----------------------------------HHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCc
Confidence 88887643211 01122222334479999999999877776667789
Q ss_pred cEEEEeCCcccCCcc-------------hH-HHHHHHhcc------------cccEEEecccCccCChHHHHHhhhhhcC
Q 044798 559 GYAVLDEGHRIRNPN-------------AE-ISLVCKQLQ------------TVHRIIMTGAPIQNKLSELWSLFDFVFP 612 (1231)
Q Consensus 559 d~VILDEAH~IKN~~-------------Sk-~skalk~L~------------t~~RllLTGTPiqNnl~EL~SLl~FL~P 612 (1231)
++||+||||.+.... .. +..++..+. ....+++||||....+...+. -.++.
T Consensus 198 ~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~-~~~l~- 275 (1104)
T 4ddu_A 198 DFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLF-RDLLN- 275 (1104)
T ss_dssp SEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHH-HHHTC-
T ss_pred CEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHh-hccee-
Confidence 999999999865321 12 334444443 345688999987665443110 00000
Q ss_pred CCCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHH
Q 044798 613 GKLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVY 692 (1231)
Q Consensus 613 ~~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY 692 (1231)
+..... ...+....+. ++..
T Consensus 276 ----------------i~v~~~-----------------------------------~~~~~~i~~~-~~~~-------- 295 (1104)
T 4ddu_A 276 ----------------FTVGRL-----------------------------------VSVARNITHV-RISS-------- 295 (1104)
T ss_dssp ----------------CCCCBC-----------------------------------CCCCCCEEEE-EESC--------
T ss_pred ----------------EEeccC-----------------------------------CCCcCCceeE-EEec--------
Confidence 000000 0001111111 1111
Q ss_pred HHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccH
Q 044798 693 RAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQ 772 (1231)
Q Consensus 693 ~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~ 772 (1231)
.|...|.++|.. .+.++||||+++
T Consensus 296 -----------------------------------------------------~k~~~L~~ll~~---~~~~~LVF~~s~ 319 (1104)
T 4ddu_A 296 -----------------------------------------------------RSKEKLVELLEI---FRDGILIFAQTE 319 (1104)
T ss_dssp -----------------------------------------------------CCHHHHHHHHHH---HCSSEEEEESSS
T ss_pred -----------------------------------------------------CHHHHHHHHHHh---cCCCEEEEECcH
Confidence 123334455554 357999999999
Q ss_pred HHHHHHHHHHHHcCCcEE-EEeCCCCHHHHHHHHHHHhCCCCceEEEEe---ccccccccCCCC-CCEEEEcCCCC
Q 044798 773 QMLDILESFLIASGYEYR-RMDGLTPVKQRMALIDEYNNSSDVFIFILT---TKVGGLGTNLTG-ANRVIIFDPDW 843 (1231)
Q Consensus 773 ~~LdiLe~~L~~~Gi~~~-rIdGsts~~eRq~iId~Fn~d~~i~VfLlS---TkvGg~GLNLt~-AnrVIi~Dp~W 843 (1231)
...+.|..+|...|+.+. .+|| +|.+ ++.|.++ .+.|++.+ |+++++|||+++ ++.||+||+|-
T Consensus 320 ~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G-~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 320 EEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVG-KINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp HHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHT-SCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred HHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCC-CCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 999999999999999998 9999 2555 9999998 56665543 999999999999 99999999997
No 44
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.86 E-value=1.2e-20 Score=244.02 Aligned_cols=347 Identities=14% Similarity=0.120 Sum_probs=206.9
Q ss_pred hchHHHHHHHHHHHHHHc----------CCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC-CcchHHHHHHH
Q 044798 401 NLFDYQKVGVQWLWELHC----------QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP-VTLLRQWKREA 469 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~----------~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P-~sLl~QW~~E~ 469 (1231)
.|+|||..+|.++++... .+.+||+.+.||+|||++++.++..+...+...++||||| ..|..||..+|
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f 350 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEY 350 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHH
Confidence 589999999999987532 1368999999999999998666543333344468999999 68999999999
Q ss_pred HHHcCCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHH
Q 044798 470 EKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLL 549 (1231)
Q Consensus 470 ~kw~p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~ 549 (1231)
..|.+.. +.+... ... +.........+|+|+||++|...
T Consensus 351 ~~f~~~~----v~~~~s----------------------------------~~~---l~~~L~~~~~~IiVtTiqkl~~~ 389 (1038)
T 2w00_A 351 QRFSPDS----VNGSEN----------------------------------TAG---LKRNLDKDDNKIIVTTIQKLNNL 389 (1038)
T ss_dssp HTTSTTC----SSSSCC----------------------------------CHH---HHHHHHCSSCCEEEEEHHHHHHH
T ss_pred HHhcccc----cccccC----------------------------------HHH---HHHHhcCCCCCEEEEEHHHHHHH
Confidence 9987541 111100 000 11111124578999999999876
Q ss_pred Hhhh----hcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHHHhh
Q 044798 550 GEKL----LDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFEAEF 625 (1231)
Q Consensus 550 ~~~L----~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~~~f 625 (1231)
.... ....+.+||+||||++.... ........+....+++|||||+...-.. +. ......|
T Consensus 390 l~~~~~~~~~~~~~lvIiDEAHrs~~~~-~~~~I~~~~p~a~~lgfTATP~~~~~~~-------------~~-~~t~~~F 454 (1038)
T 2w00_A 390 MKAESDLPVYNQQVVFIFDECHRSQFGE-AQKNLKKKFKRYYQFGFTGTPIFPENAL-------------GS-ETTASVF 454 (1038)
T ss_dssp HHHCCCCGGGGSCEEEEEESCCTTHHHH-HHHHHHHHCSSEEEEEEESSCCCSTTCT-------------TS-CCHHHHH
T ss_pred HhcccchhccccccEEEEEccchhcchH-HHHHHHHhCCcccEEEEeCCccccccch-------------hh-hHHHHHh
Confidence 5421 12268899999999975322 1223345567778899999998642100 00 0001112
Q ss_pred ccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHHHHh
Q 044798 626 AVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVEQIL 705 (1231)
Q Consensus 626 ~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~~il 705 (1231)
..++..-. +.+.|..- .-+|. .+.+....+. |.....
T Consensus 455 G~~i~~Y~------------------l~~AI~dg----------~l~p~---~v~y~~v~~~----~~~~~~-------- 491 (1038)
T 2w00_A 455 GRELHSYV------------------ITDAIRDE----------KVLKF---KVDYNDVRPQ----FKSLET-------- 491 (1038)
T ss_dssp CSEEEEEC------------------HHHHHHHT----------SSCCE---EEEECCCCGG----GHHHHT--------
T ss_pred CCeeEeec------------------HHHHHhCC----------CcCCe---EEEEEeccch----hhhccc--------
Confidence 21111000 11111100 01222 1222222221 100000
Q ss_pred hcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHH-HHHHHHHHh---------cCCeEEEEeccHHHH
Q 044798 706 DGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVV-AQVLKVWKD---------QGHRVLLFAQTQQML 775 (1231)
Q Consensus 706 ~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L-~eLLk~~~~---------~g~KVLVFSQ~~~~L 775 (1231)
. .. ...+..+- . ........++..+ ..++..+.. .+.++||||.++..+
T Consensus 492 e-~d-----~~~~~~i~-~--------------~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A 550 (1038)
T 2w00_A 492 E-TD-----EKKLSAAE-N--------------QQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAA 550 (1038)
T ss_dssp C-CC-----HHHHHHTC-S--------------TTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHH
T ss_pred c-cc-----HHHHHHHH-H--------------HHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHH
Confidence 0 00 00000000 0 0000011233333 334554432 356899999999999
Q ss_pred HHHHHHHHHcC------------CcE-EEEeCC----------C----------CH------------------------
Q 044798 776 DILESFLIASG------------YEY-RRMDGL----------T----------PV------------------------ 798 (1231)
Q Consensus 776 diLe~~L~~~G------------i~~-~rIdGs----------t----------s~------------------------ 798 (1231)
..+...|...+ +++ +.++|. + +.
T Consensus 551 ~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~ 630 (1038)
T 2w00_A 551 KAYYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTD 630 (1038)
T ss_dssp HHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSS
T ss_pred HHHHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhccccccc
Confidence 99988887654 455 455653 1 22
Q ss_pred -----HHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCc-cc-EEEEEEE
Q 044798 799 -----KQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQK-QD-VTVYRLI 870 (1231)
Q Consensus 799 -----~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQk-k~-V~VYRLi 870 (1231)
..|..++++|.++ .+.+ |+++++..+|+|.+.+ .|+++|.|.....++||+||+.|.+.. |+ ..|+.|+
T Consensus 631 ~~~~~~~R~~i~~~Fk~g-~i~I-LIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~ 706 (1038)
T 2w00_A 631 SNGFQNYYRDLAQRVKNQ-DIDL-LIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFR 706 (1038)
T ss_dssp HHHHHHHHHHHHHHHHTT-SSSE-EEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESS
T ss_pred chhhhHHHHHHHHHHHcC-CCeE-EEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcc
Confidence 1488899999987 4666 6678999999999999 788999999999999999999999874 44 6666655
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.82 E-value=1.3e-19 Score=236.34 Aligned_cols=272 Identities=14% Similarity=0.124 Sum_probs=174.3
Q ss_pred chHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCC--C--
Q 044798 402 LFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPS--F-- 476 (1231)
Q Consensus 402 L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~--l-- 476 (1231)
+ |+|.+++..+. .+..+|+..++|+|||+.++.++..+. .....+|||||. .|+.|+.+.+.++++. +
T Consensus 58 p-~iQ~~ai~~il----~g~dvlv~apTGSGKTl~~lp~l~~~~--~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~ 130 (1054)
T 1gku_B 58 R-AIQKMWAKRIL----RKESFAATAPTGVGKTSFGLAMSLFLA--LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGT 130 (1054)
T ss_dssp C-HHHHHHHHHHH----TTCCEECCCCBTSCSHHHHHHHHHHHH--TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSG
T ss_pred H-HHHHHHHHHHH----hCCCEEEEcCCCCCHHHHHHHHHHHHh--hcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCc
Confidence 6 89999998773 567899999999999984444444433 235689999996 8889999999998864 3
Q ss_pred --eEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhh
Q 044798 477 --HVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLL 554 (1231)
Q Consensus 477 --rV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~ 554 (1231)
++..++|........ .....+.. .+|+|+|++.+..+...|.
T Consensus 131 ~~~v~~~~Gg~~~~~~~-----------------------------------~~~~~l~~-~~IlV~TP~~L~~~l~~L~ 174 (1054)
T 1gku_B 131 ENLIGYYHGRIPKREKE-----------------------------------NFMQNLRN-FKIVITTTQFLSKHYRELG 174 (1054)
T ss_dssp GGSEEECCSSCCSHHHH-----------------------------------HHHHSGGG-CSEEEEEHHHHHHCSTTSC
T ss_pred cceEEEEeCCCChhhHH-----------------------------------HHHhhccC-CCEEEEcHHHHHHHHHHhc
Confidence 667777654321100 01111223 7999999999988766543
Q ss_pred cCCccEEEEeCCcccCCcchHHHHHHHhcc------------cccEEEecccCccCChHHHHHhhhhhcCCCCCChhHHH
Q 044798 555 DVEWGYAVLDEGHRIRNPNAEISLVCKQLQ------------TVHRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFE 622 (1231)
Q Consensus 555 ~~~wd~VILDEAH~IKN~~Sk~skalk~L~------------t~~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~ 622 (1231)
.+++||+||||++.+........+..+. ....+++|+|+-.. .++. ..|.
T Consensus 175 --~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~--~~~~--------------~~~~ 236 (1054)
T 1gku_B 175 --HFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK--KGKK--------------AELF 236 (1054)
T ss_dssp --CCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC--CCTT--------------HHHH
T ss_pred --cCCEEEEeChhhhhhccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc--hhHH--------------HHHh
Confidence 7889999999999875555555555442 23347777776443 1100 0000
Q ss_pred HhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCceEEEEEecCCHHHHHHHHHHHhhHHHH
Q 044798 623 AEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKKTEHVLFCSLTEEQRAVYRAFLASSEVE 702 (1231)
Q Consensus 623 ~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K~e~vv~~~Lt~~Qr~lY~~~l~s~~~~ 702 (1231)
..+.. +... ....+.......++.
T Consensus 237 ~~~~~-i~v~------------------------------------~~~~~~~~i~~~~~~------------------- 260 (1054)
T 1gku_B 237 RQLLN-FDIG------------------------------------SSRITVRNVEDVAVN------------------- 260 (1054)
T ss_dssp HHHHC-CCCS------------------------------------CCEECCCCEEEEEES-------------------
T ss_pred hcceE-EEcc------------------------------------CcccCcCCceEEEec-------------------
Confidence 00000 0000 000011111111110
Q ss_pred HHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHH
Q 044798 703 QILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFL 782 (1231)
Q Consensus 703 ~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L 782 (1231)
..|...|.++|.. .+.++||||.++..++.|...|
T Consensus 261 ------------------------------------------~~k~~~L~~ll~~---~~~~~LVF~~t~~~a~~l~~~L 295 (1054)
T 1gku_B 261 ------------------------------------------DESISTLSSILEK---LGTGGIIYARTGEEAEEIYESL 295 (1054)
T ss_dssp ------------------------------------------CCCTTTTHHHHTT---SCSCEEEEESSHHHHHHHHHTT
T ss_pred ------------------------------------------hhHHHHHHHHHhh---cCCCEEEEEcCHHHHHHHHHHH
Confidence 1122223444432 2679999999999999999999
Q ss_pred HHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEe---ccccccccCCCCC-CEEEEcCCC
Q 044798 783 IASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILT---TKVGGLGTNLTGA-NRVIIFDPD 842 (1231)
Q Consensus 783 ~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlS---TkvGg~GLNLt~A-nrVIi~Dp~ 842 (1231)
... +++..+||.+ ..+++.|.++ .+.|++.+ |+++++|||++++ +.||+||+|
T Consensus 296 ~~~-~~v~~lhg~~-----~~~l~~F~~G-~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 296 KNK-FRIGIVTATK-----KGDYEKFVEG-EIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp TTS-SCEEECTTSS-----SHHHHHHHHT-SCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred hhc-cCeeEEeccH-----HHHHHHHHcC-CCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 988 9999999998 3788999987 56776654 9999999999995 999999999
No 46
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.80 E-value=1.7e-18 Score=216.11 Aligned_cols=118 Identities=18% Similarity=0.199 Sum_probs=103.4
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecc
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTK 822 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTk 822 (1231)
....|..+|.++|..+...+.++||||.++...+.|...|...|+++..|+|.+...+|..+...|+.+ . +|++|+
T Consensus 413 ~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~rEr~ii~~ag~~g---~-VlIATd 488 (844)
T 1tf5_A 413 TMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHEREAQIIEEAGQKG---A-VTIATN 488 (844)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHHHHHHTTTTSTT---C-EEEEET
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHHHHHHHHHcCCCC---e-EEEeCC
Confidence 456799999999988777788999999999999999999999999999999999877776555555544 3 488999
Q ss_pred ccccccCCC--------CCCEEEEcCCCCCcchHHHHHHhHHhhCCcccE
Q 044798 823 VGGLGTNLT--------GANRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864 (1231)
Q Consensus 823 vGg~GLNLt--------~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V 864 (1231)
++|+|+|+. +..+||+||.|-++..|.|++||++|.|..-..
T Consensus 489 mAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 489 MAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred ccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 999999999 788999999999999999999999999976543
No 47
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.76 E-value=1.5e-18 Score=207.10 Aligned_cols=95 Identities=19% Similarity=0.170 Sum_probs=85.1
Q ss_pred cCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcC
Q 044798 761 QGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFD 840 (1231)
Q Consensus 761 ~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~D 840 (1231)
.+.++||||+++...+.+...|...|+.+..++|.+ ++.+++.|.++ .+.| |++|+++++|||+++ +.||.||
T Consensus 187 ~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g-~~~v-LVaT~v~~~GiDip~-~~VI~~~ 259 (451)
T 2jlq_A 187 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLT-DWDF-VVTTDISEMGANFRA-GRVIDPR 259 (451)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSS-CCSE-EEECGGGGSSCCCCC-SEEEECC
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccC-CceE-EEECCHHHhCcCCCC-CEEEECC
Confidence 356999999999999999999999999999999976 35789999987 4444 789999999999999 9999998
Q ss_pred --------------------CCCCcchHHHHHHhHHhhCCcc
Q 044798 841 --------------------PDWNPSTDVQARERAWRIGQKQ 862 (1231)
Q Consensus 841 --------------------p~WNPs~d~QAigRa~RiGQkk 862 (1231)
+|.++..|.|++||++|.|...
T Consensus 260 ~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~ 301 (451)
T 2jlq_A 260 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE 301 (451)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC
T ss_pred CcccccccccccceeeecccccCCHHHHHHhccccCCCCCCC
Confidence 8999999999999999999733
No 48
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.75 E-value=2e-17 Score=205.98 Aligned_cols=118 Identities=16% Similarity=0.193 Sum_probs=104.6
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecc
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTK 822 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTk 822 (1231)
....|..+|.++|..+...|..|||||.++...+.|...|...|+++..|+|.....+|.-+...|+.+ . ++|+|+
T Consensus 422 ~~~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G---~-VtIATn 497 (853)
T 2fsf_A 422 TEAEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA---A-VTIATN 497 (853)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT---C-EEEEES
T ss_pred CHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC---e-EEEecc
Confidence 456799999999988877888999999999999999999999999999999998777777777788776 3 588999
Q ss_pred ccccccCCCCC-------------------------------------CEEEEcCCCCCcchHHHHHHhHHhhCCcccE
Q 044798 823 VGGLGTNLTGA-------------------------------------NRVIIFDPDWNPSTDVQARERAWRIGQKQDV 864 (1231)
Q Consensus 823 vGg~GLNLt~A-------------------------------------nrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V 864 (1231)
++|+|+|+... .+||.||.|-++..|.|++||++|.|..-..
T Consensus 498 mAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s 576 (853)
T 2fsf_A 498 MAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSS 576 (853)
T ss_dssp CCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred cccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeE
Confidence 99999999853 5999999999999999999999999976543
No 49
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.75 E-value=4.3e-18 Score=202.15 Aligned_cols=100 Identities=17% Similarity=0.192 Sum_probs=85.8
Q ss_pred cCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCE-----
Q 044798 761 QGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANR----- 835 (1231)
Q Consensus 761 ~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~Anr----- 835 (1231)
.+.++||||.++...+.+...|...|+++..+||. +|+.+++.|.++ .+.| |++|.+.++|||++ +..
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g-~~~v-LVaT~v~e~GiDip-~~~VI~~g 242 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSE-KWDF-VITTDISEMGANFK-ADRVIDPR 242 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHS-CCSE-EEECGGGGTSCCCC-CSEEEECC
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCC-CCeE-EEECchHHcCcccC-CcEEEecC
Confidence 35699999999999999999999999999999997 588899999987 4444 78999999999999 544
Q ss_pred ------------EEEcCCCCCcchHHHHHHhHHhhCCccc-EEEE
Q 044798 836 ------------VIIFDPDWNPSTDVQARERAWRIGQKQD-VTVY 867 (1231)
Q Consensus 836 ------------VIi~Dp~WNPs~d~QAigRa~RiGQkk~-V~VY 867 (1231)
||+++.|.++..+.|++||++|.|...- +.+|
T Consensus 243 ~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 243 KTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp EEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred ccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 5778999999999999999999996443 4433
No 50
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.73 E-value=2.7e-16 Score=196.10 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=103.0
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecc
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTK 822 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTk 822 (1231)
....|..+|.+.+......|..|||||.++...+.|...|...|+++..|+|.+...+|.-+...|+.+ . ++|+|+
T Consensus 441 t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~iia~agr~G---~-VtIATn 516 (922)
T 1nkt_A 441 TEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATIIAVAGRRG---G-VTVATN 516 (922)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHHHHTTTSTT---C-EEEEET
T ss_pred CHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC---e-EEEecc
Confidence 456799999999988877888999999999999999999999999999999998766666666777765 3 478999
Q ss_pred ccccccCCCCC----------------------------------------------------CEEEEcCCCCCcchHHH
Q 044798 823 VGGLGTNLTGA----------------------------------------------------NRVIIFDPDWNPSTDVQ 850 (1231)
Q Consensus 823 vGg~GLNLt~A----------------------------------------------------nrVIi~Dp~WNPs~d~Q 850 (1231)
++|+|+|+... .+||.||.|-++..|.|
T Consensus 517 mAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~q 596 (922)
T 1nkt_A 517 MAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQ 596 (922)
T ss_dssp TCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHH
T ss_pred hhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHH
Confidence 99999999853 59999999999999999
Q ss_pred HHHhHHhhCCcccE
Q 044798 851 ARERAWRIGQKQDV 864 (1231)
Q Consensus 851 AigRa~RiGQkk~V 864 (1231)
++||++|.|..-..
T Consensus 597 r~GRTGRqGdpG~s 610 (922)
T 1nkt_A 597 LRGRSGRQGDPGES 610 (922)
T ss_dssp HHHTSSGGGCCEEE
T ss_pred HhcccccCCCCeeE
Confidence 99999999976543
No 51
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.73 E-value=6e-18 Score=201.47 Aligned_cols=93 Identities=18% Similarity=0.163 Sum_probs=76.9
Q ss_pred cCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEE--
Q 044798 761 QGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVII-- 838 (1231)
Q Consensus 761 ~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi-- 838 (1231)
.+.++||||.++...+.+...|...|+++..+|| .+|..+++.|.++ .+.| |++|++.++|||++ ++.||+
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g-~~~v-LVaT~v~e~GiDip-v~~VI~~g 248 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQK-KPDF-ILATDIAEMGANLC-VERVLDCR 248 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------C-CCSE-EEESSSTTCCTTCC-CSEEEECC
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCC-CceE-EEECChhheeeccC-ceEEEeCC
Confidence 4779999999999999999999999999999999 4688999999987 4554 78999999999999 999985
Q ss_pred -----------------cCCCCCcchHHHHHHhHHhhCC
Q 044798 839 -----------------FDPDWNPSTDVQARERAWRIGQ 860 (1231)
Q Consensus 839 -----------------~Dp~WNPs~d~QAigRa~RiGQ 860 (1231)
||+|.+++.+.|++||++|.|.
T Consensus 249 ~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~ 287 (440)
T 1yks_A 249 TAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN 287 (440)
T ss_dssp EEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred ccceeeecccccceeeccccccCHHHHHHhccccCCCCC
Confidence 8999999999999999999853
No 52
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.73 E-value=7.6e-18 Score=188.20 Aligned_cols=162 Identities=12% Similarity=0.101 Sum_probs=120.1
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcC--CCe
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYP--SFH 477 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p--~lr 477 (1231)
.|+|||.+++.+++. +..+||+++||+|||+++++++..+...+ .+++|||||. .|+.||.++|.+|.. ...
T Consensus 113 ~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~ 187 (282)
T 1rif_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY-EGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (282)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC-SSEEEEECSSHHHHHHHHHHHHHHTSCCGGG
T ss_pred CccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHhcccccce
Confidence 699999999998865 25689999999999999988776654432 3589999996 899999999999963 345
Q ss_pred EEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcCC
Q 044798 478 VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVE 557 (1231)
Q Consensus 478 V~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~~ 557 (1231)
+..+.+..... . ......+|+|+||+.+......+ ...
T Consensus 188 ~~~~~~~~~~~------------------------------~-----------~~~~~~~I~v~T~~~l~~~~~~~-~~~ 225 (282)
T 1rif_A 188 IKKIGGGASKD------------------------------D-----------KYKNDAPVVVGTWQTVVKQPKEW-FSQ 225 (282)
T ss_dssp EEECSTTCSST------------------------------T-----------CCCTTCSEEEECHHHHTTSCGGG-GGG
T ss_pred EEEEeCCCcch------------------------------h-----------hhccCCcEEEEchHHHHhhHHHH-Hhh
Confidence 54444332100 0 01134589999999886553322 247
Q ss_pred ccEEEEeCCcccCCcchHHHHHHHhc-ccccEEEecccCccCChHHHHHhhhhhcC
Q 044798 558 WGYAVLDEGHRIRNPNAEISLVCKQL-QTVHRIIMTGAPIQNKLSELWSLFDFVFP 612 (1231)
Q Consensus 558 wd~VILDEAH~IKN~~Sk~skalk~L-~t~~RllLTGTPiqNnl~EL~SLl~FL~P 612 (1231)
|++||+||||++.++ .....+..+ ...++|+|||||. |...+++.++.++.|
T Consensus 226 ~~~vIiDEaH~~~~~--~~~~il~~~~~~~~~l~lSATp~-~~~~~~~~l~~l~g~ 278 (282)
T 1rif_A 226 FGMMMNDECHLATGK--SISSIISGLNNCMFKFGLSGSLR-DGKANIMQYVGMFGE 278 (282)
T ss_dssp EEEEEEETGGGCCHH--HHHHHTTTCTTCCEEEEECSSCC-TTSTTHHHHHHHHCE
T ss_pred CCEEEEECCccCCcc--cHHHHHHHhhcCCeEEEEeCCCC-CcchHHHHHHHhcCC
Confidence 899999999999854 455566666 6788899999995 556888888888755
No 53
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.73 E-value=2.3e-17 Score=171.78 Aligned_cols=120 Identities=19% Similarity=0.274 Sum_probs=109.2
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecc
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTK 822 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTk 822 (1231)
..+.|+..|.++|+.. .+.++||||+++..++.|...|...|+.+..++|.++..+|..+++.|+++ .+.| |++|+
T Consensus 14 ~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~v-LvaT~ 89 (172)
T 1t5i_A 14 KDNEKNRKLFDLLDVL--EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF-QRRI-LVATN 89 (172)
T ss_dssp CGGGHHHHHHHHHHHS--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSE-EEESS
T ss_pred ChHHHHHHHHHHHHhC--CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC-CCcE-EEECC
Confidence 3567999999999864 467999999999999999999999999999999999999999999999987 4555 67899
Q ss_pred ccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEE
Q 044798 823 VGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866 (1231)
Q Consensus 823 vGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~V 866 (1231)
++++|||++.+++||+||+|||+..|.|++||++|.|+...+.+
T Consensus 90 ~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~ 133 (172)
T 1t5i_A 90 LFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 133 (172)
T ss_dssp CCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEE
T ss_pred chhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEE
Confidence 99999999999999999999999999999999999998765444
No 54
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.72 E-value=2.4e-17 Score=169.76 Aligned_cols=125 Identities=19% Similarity=0.318 Sum_probs=111.7
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecc
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTK 822 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTk 822 (1231)
..+.|+..|.++|... .+.++||||+++..++.|...|...|+.+..++|.++..+|..+++.|+++ .+.| |++|+
T Consensus 18 ~~~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~v-lv~T~ 93 (163)
T 2hjv_A 18 REENKFSLLKDVLMTE--NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG-EYRY-LVATD 93 (163)
T ss_dssp CGGGHHHHHHHHHHHH--CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSE-EEECG
T ss_pred ChHHHHHHHHHHHHhc--CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeE-EEECC
Confidence 3578999999999864 467999999999999999999999999999999999999999999999987 4554 67899
Q ss_pred ccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCC
Q 044798 823 VGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 823 vGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~g 873 (1231)
++++|+|++.+++||+||+|||+..+.|++||++|.||...+ |.|+...
T Consensus 94 ~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~--~~~~~~~ 142 (163)
T 2hjv_A 94 VAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA--ISFVTAF 142 (163)
T ss_dssp GGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEE--EEEECGG
T ss_pred hhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceE--EEEecHH
Confidence 999999999999999999999999999999999999987655 4455543
No 55
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.72 E-value=1.9e-17 Score=198.16 Aligned_cols=105 Identities=17% Similarity=0.167 Sum_probs=87.6
Q ss_pred cCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEE--
Q 044798 761 QGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVII-- 838 (1231)
Q Consensus 761 ~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi-- 838 (1231)
.+.++||||.++...+.|...|...|+.+..++|. +|..+++.|.++ .+.| |++|+++++|||+++ +.||.
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g-~~~i-LVaT~v~~~GiDip~-~~VI~~G 261 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNG-DWDF-VITTDISEMGANFGA-SRVIDCR 261 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSC-CCSE-EEESSCC---CCCSC-SEEEECC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCC-CceE-EEECChHHhCeecCC-CEEEECC
Confidence 36799999999999999999999999999999995 688899999987 4455 789999999999999 99998
Q ss_pred ------------------cCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCC
Q 044798 839 ------------------FDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 839 ------------------~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~g 873 (1231)
||+|.++..+.|++||++|.|.. +-.+|.|+...
T Consensus 262 ~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~-~G~~~~~~~~~ 313 (459)
T 2z83_A 262 KSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQ-VGDEYHYGGAT 313 (459)
T ss_dssp EECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTC-CCEEEEECSCC
T ss_pred cccccccccccccccccccCCCCCHHHHHHhccccCCCCCC-CCeEEEEEccc
Confidence 88999999999999999999963 22345566654
No 56
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.71 E-value=6.1e-18 Score=178.41 Aligned_cols=126 Identities=21% Similarity=0.323 Sum_probs=98.1
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecc
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTK 822 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTk 822 (1231)
..+.|+..|.++|.... .+.++||||+++..++.|...|...|+.+..++|.++..+|..+++.|+++ .+. +|++|+
T Consensus 28 ~~~~K~~~L~~ll~~~~-~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g-~~~-vLvaT~ 104 (185)
T 2jgn_A 28 EESDKRSFLLDLLNATG-KDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG-KSP-ILVATA 104 (185)
T ss_dssp CGGGHHHHHHHHHHHC--CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT-SSS-EEEEEC
T ss_pred CcHHHHHHHHHHHHhcC-CCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC-CCe-EEEEcC
Confidence 45789999999998743 567999999999999999999999999999999999999999999999987 455 477899
Q ss_pred ccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCC
Q 044798 823 VGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 823 vGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~g 873 (1231)
++++|||++.++.||+||+|||+..+.|++||++|.|++.. +|.|++..
T Consensus 105 ~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~--~~~~~~~~ 153 (185)
T 2jgn_A 105 VAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGL--ATSFFNER 153 (185)
T ss_dssp ------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEE--EEEEECGG
T ss_pred hhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcE--EEEEEchh
Confidence 99999999999999999999999999999999999997654 45556544
No 57
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.70 E-value=9.5e-17 Score=203.28 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=95.6
Q ss_pred cCCeEEEEeccHHHHHHHHHHHHH-----------cCCcEEEEeCCCCHHHHHHHHHHHh-----CCCCceEEEEecccc
Q 044798 761 QGHRVLLFAQTQQMLDILESFLIA-----------SGYEYRRMDGLTPVKQRMALIDEYN-----NSSDVFIFILTTKVG 824 (1231)
Q Consensus 761 ~g~KVLVFSQ~~~~LdiLe~~L~~-----------~Gi~~~rIdGsts~~eRq~iId~Fn-----~d~~i~VfLlSTkvG 824 (1231)
.+.++|||+..+...+.+...|.. .++.+..++|+++..+|..+++.|. ++ . .-+|++|.++
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g-~-~kVlVAT~ia 379 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRP-G-RKVVISTNIA 379 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSC-C-EEEEEECTHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCC-c-eEEEEeCcHH
Confidence 467999999999999999998875 5788999999999999999999998 55 3 5568899999
Q ss_pred ccccCCCCCCEEEEcCC------------------CCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCH
Q 044798 825 GLGTNLTGANRVIIFDP------------------DWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875 (1231)
Q Consensus 825 g~GLNLt~AnrVIi~Dp------------------~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTI 875 (1231)
+.|||+.+++.||.++. |.+...+.|++||++|. ++=.+|+|+++...
T Consensus 380 e~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~---~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 380 ETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT---RPGKCFRLYTEEAF 445 (773)
T ss_dssp HHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS---SSEEEEESSCHHHH
T ss_pred HhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC---CCCEEEEEecHHHh
Confidence 99999999999999666 88999999999999998 45678888865443
No 58
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.70 E-value=3e-17 Score=204.62 Aligned_cols=97 Identities=21% Similarity=0.242 Sum_probs=85.7
Q ss_pred cCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEE--
Q 044798 761 QGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVII-- 838 (1231)
Q Consensus 761 ~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi-- 838 (1231)
.+.++||||.++...+.+...|...|+++..+||. +|..+++.|.++ .+.| |++|+++++|||++ +++||+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g-~~~V-LVaTdv~e~GIDip-v~~VI~~g 481 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNG-DWDF-VITTDISEMGANFG-ASRVIDCR 481 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTC-CCSE-EEECGGGGTTCCCC-CSEEEECC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCC-CceE-EEECchhhcceeeC-CcEEEECC
Confidence 47799999999999999999999999999999994 799999999987 4555 78899999999999 999997
Q ss_pred ------------------cCCCCCcchHHHHHHhHHhh-CCcccE
Q 044798 839 ------------------FDPDWNPSTDVQARERAWRI-GQKQDV 864 (1231)
Q Consensus 839 ------------------~Dp~WNPs~d~QAigRa~Ri-GQkk~V 864 (1231)
||+|.+++.|.|++||++|. |+.-.+
T Consensus 482 ~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~a 526 (673)
T 2wv9_A 482 KSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDE 526 (673)
T ss_dssp EECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEE
T ss_pred CcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEE
Confidence 67888999999999999999 444333
No 59
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.69 E-value=8.9e-17 Score=165.73 Aligned_cols=124 Identities=16% Similarity=0.263 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccc
Q 044798 746 EKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGG 825 (1231)
Q Consensus 746 ~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg 825 (1231)
.|+..|.+++... .+.++||||+++..++.+...|...|+.+..++|.++..+|..+++.|+++ .+.| |++|++++
T Consensus 16 ~K~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~v-lv~T~~~~ 91 (165)
T 1fuk_A 16 YKYECLTDLYDSI--SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG-SSRI-LISTDLLA 91 (165)
T ss_dssp GHHHHHHHHHHHT--TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSE-EEEEGGGT
T ss_pred hHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC-CCEE-EEEcChhh
Confidence 3999999999875 467999999999999999999999999999999999999999999999987 4454 67899999
Q ss_pred cccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCH
Q 044798 826 LGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875 (1231)
Q Consensus 826 ~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTI 875 (1231)
+|+|++.++.||+||+||++..+.|++||++|.|+...+ |.|++....
T Consensus 92 ~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~--~~~~~~~~~ 139 (165)
T 1fuk_A 92 RGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVA--INFVTNEDV 139 (165)
T ss_dssp TTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEE--EEEEETTTH
T ss_pred cCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceE--EEEEcchHH
Confidence 999999999999999999999999999999999976654 556776654
No 60
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.68 E-value=1.2e-16 Score=197.84 Aligned_cols=103 Identities=18% Similarity=0.172 Sum_probs=88.2
Q ss_pred cCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEE----
Q 044798 761 QGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRV---- 836 (1231)
Q Consensus 761 ~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrV---- 836 (1231)
.+.++||||.++...+.+...|...|+++..++|. +|..+++.|.++ .+.| |++|+++++|||+. +++|
T Consensus 354 ~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g-~~~V-LVaTdv~~rGiDi~-v~~VId~g 426 (618)
T 2whx_A 354 YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLT-DWDF-VVTTDISEMGANFR-AGRVIDPR 426 (618)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHS-CCSE-EEECGGGGTTCCCC-CSEEEECC
T ss_pred CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCC-CcEE-EEECcHHHcCcccC-ceEEEECc
Confidence 46799999999999999999999999999999994 788899999987 4444 78999999999996 8888
Q ss_pred ----------------EEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEe
Q 044798 837 ----------------IIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLIT 871 (1231)
Q Consensus 837 ----------------Ii~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit 871 (1231)
|+||+|-++..|+|++||++|.|..... +|.|++
T Consensus 427 ~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~-ai~l~~ 476 (618)
T 2whx_A 427 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDD-QYVFSG 476 (618)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCE-EEEECS
T ss_pred ceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCe-EEEEcc
Confidence 6777788888999999999999864432 455665
No 61
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.68 E-value=6.7e-17 Score=171.45 Aligned_cols=124 Identities=19% Similarity=0.283 Sum_probs=107.0
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecc
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTK 822 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTk 822 (1231)
..+.|+..|.++|.. .+.++||||+++..++.|...|...|+.+..++|.++..+|..+++.|+++ .+.| |++|+
T Consensus 38 ~~~~K~~~L~~~l~~---~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~~v-LvaT~ 112 (191)
T 2p6n_A 38 KEEAKMVYLLECLQK---TPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG-KKDV-LVATD 112 (191)
T ss_dssp CGGGHHHHHHHHHTT---SCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHT-SCSE-EEECH
T ss_pred ChHHHHHHHHHHHHh---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCEE-EEEcC
Confidence 346788888888764 466999999999999999999999999999999999999999999999987 4554 78899
Q ss_pred ccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCC
Q 044798 823 VGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 823 vGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~g 873 (1231)
++++|||++.++.||+||+|||+..|.|++||++|.|++..+ +.|++..
T Consensus 113 ~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~--i~l~~~~ 161 (191)
T 2p6n_A 113 VASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIA--TTFINKA 161 (191)
T ss_dssp HHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEE--EEEECTT
T ss_pred chhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEE--EEEEcCc
Confidence 999999999999999999999999999999999999997654 4456544
No 62
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.68 E-value=1e-16 Score=199.67 Aligned_cols=108 Identities=19% Similarity=0.265 Sum_probs=94.8
Q ss_pred eEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEEEcCC--
Q 044798 764 RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVIIFDP-- 841 (1231)
Q Consensus 764 KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVIi~Dp-- 841 (1231)
..||||.++..++.+...|...|+.+..+||.++..+|..+++.|+++++..-+|++|++++.|||+ .+++||+++.
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k 400 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIK 400 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC
T ss_pred CCEEEEcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCccc
Confidence 4588899999999999999999999999999999999999999999832223447899999999999 9999999999
Q ss_pred ------------CCCcchHHHHHHhHHhhCCc-ccEEEEEEEeC
Q 044798 842 ------------DWNPSTDVQARERAWRIGQK-QDVTVYRLITR 872 (1231)
Q Consensus 842 ------------~WNPs~d~QAigRa~RiGQk-k~V~VYRLit~ 872 (1231)
|++++.+.|++||++|.|+. .+-.||++...
T Consensus 401 ~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 401 PSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHE 444 (677)
T ss_dssp -----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTT
T ss_pred cccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecc
Confidence 88999999999999999987 44677776543
No 63
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.67 E-value=3.9e-16 Score=170.90 Aligned_cols=140 Identities=21% Similarity=0.273 Sum_probs=108.2
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCe-
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFH- 477 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lr- 477 (1231)
..|+|||.+++.+++ .+..+|++++||+|||+++++++..+ .+++|||||. .++.||.+++.+| +..
T Consensus 92 ~~l~~~Q~~ai~~~~----~~~~~ll~~~tG~GKT~~a~~~~~~~-----~~~~liv~P~~~L~~q~~~~~~~~--~~~~ 160 (237)
T 2fz4_A 92 ISLRDYQEKALERWL----VDKRGCIVLPTGSGKTHVAMAAINEL-----STPTLIVVPTLALAEQWKERLGIF--GEEY 160 (237)
T ss_dssp CCCCHHHHHHHHHHT----TTSEEEEEESSSTTHHHHHHHHHHHS-----CSCEEEEESSHHHHHHHHHHHGGG--CGGG
T ss_pred CCcCHHHHHHHHHHH----hCCCEEEEeCCCCCHHHHHHHHHHHc-----CCCEEEEeCCHHHHHHHHHHHHhC--CCCe
Confidence 368999999998763 34569999999999999998877654 4789999997 8889999999994 455
Q ss_pred EEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcCC
Q 044798 478 VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVE 557 (1231)
Q Consensus 478 V~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~~ 557 (1231)
+.++++... ...+|+|+||+.+......+. ..
T Consensus 161 v~~~~g~~~-----------------------------------------------~~~~i~v~T~~~l~~~~~~~~-~~ 192 (237)
T 2fz4_A 161 VGEFSGRIK-----------------------------------------------ELKPLTVSTYDSAYVNAEKLG-NR 192 (237)
T ss_dssp EEEESSSCB-----------------------------------------------CCCSEEEEEHHHHHHTHHHHT-TT
T ss_pred EEEEeCCCC-----------------------------------------------CcCCEEEEeHHHHHhhHHHhc-cc
Confidence 766664321 124799999999987766543 46
Q ss_pred ccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCCh
Q 044798 558 WGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKL 600 (1231)
Q Consensus 558 wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl 600 (1231)
|++||+||+|++.+.. ....+..+...++|+|||||.+++-
T Consensus 193 ~~llIiDEaH~l~~~~--~~~i~~~~~~~~~l~LSATp~r~D~ 233 (237)
T 2fz4_A 193 FMLLIFDEVHHLPAES--YVQIAQMSIAPFRLGLTATFEREDG 233 (237)
T ss_dssp CSEEEEECSSCCCTTT--HHHHHHTCCCSEEEEEEESCC----
T ss_pred CCEEEEECCccCCChH--HHHHHHhccCCEEEEEecCCCCCCC
Confidence 9999999999998764 3345566788899999999987653
No 64
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.66 E-value=4.2e-15 Score=201.19 Aligned_cols=322 Identities=13% Similarity=0.146 Sum_probs=192.2
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHc-C--C
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWY-P--S 475 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~-p--~ 475 (1231)
..+.|.|.+++.-++ ..+.+.+++.++|+|||+.+...+.........+.+|+|+|. .|+.|-.++|.+.+ + +
T Consensus 925 ~~fnpiQ~q~~~~l~---~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g 1001 (1724)
T 4f92_B 925 PFFNPIQTQVFNTVY---NSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLN 1001 (1724)
T ss_dssp SBCCHHHHHHHHHHH---SCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHh---cCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcC
Confidence 346799999997664 366789999999999999876555444444456789999995 78888777776544 2 4
Q ss_pred CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhc
Q 044798 476 FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLD 555 (1231)
Q Consensus 476 lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~ 555 (1231)
.+|..+.|..... . + .....+|+|+|++.+.........
T Consensus 1002 ~~V~~ltGd~~~~---~-------------------------------------~-~~~~~~IiV~TPEkld~llr~~~~ 1040 (1724)
T 4f92_B 1002 KKVVLLTGETSTD---L-------------------------------------K-LLGKGNIIISTPEKWDILSRRWKQ 1040 (1724)
T ss_dssp CCEEECCSCHHHH---H-------------------------------------H-HHHHCSEEEECHHHHHHHHTTTTT
T ss_pred CEEEEEECCCCcc---h-------------------------------------h-hcCCCCEEEECHHHHHHHHhCccc
Confidence 6676666543210 0 0 112358999999998655433221
Q ss_pred ----CCccEEEEeCCcccCCcchHHHH-HHHh-------cccc-cEEEecccCccCChHHHHHhhhhhcCCCCCChhHHH
Q 044798 556 ----VEWGYAVLDEGHRIRNPNAEISL-VCKQ-------LQTV-HRIIMTGAPIQNKLSELWSLFDFVFPGKLGVLPVFE 622 (1231)
Q Consensus 556 ----~~wd~VILDEAH~IKN~~Sk~sk-alk~-------L~t~-~RllLTGTPiqNnl~EL~SLl~FL~P~~lg~~~~F~ 622 (1231)
....+||+||+|.+.+....... .+.. +... +.++||||- .|..++-. ||.....+. ..|.
T Consensus 1041 ~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl--~N~~dla~---WL~~~~~~~-~~~~ 1114 (1724)
T 4f92_B 1041 RKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSL--SNAKDVAH---WLGCSATST-FNFH 1114 (1724)
T ss_dssp CHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCB--TTHHHHHH---HHTCCSTTE-EECC
T ss_pred ccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCC--CCHHHHHH---HhCCCCCCe-EEeC
Confidence 24689999999999765433322 2222 2233 447799984 24555443 332111000 0000
Q ss_pred HhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCC-ceEEEEEecCCHHHHHHHHHHHhhHHH
Q 044798 623 AEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPK-KTEHVLFCSLTEEQRAVYRAFLASSEV 701 (1231)
Q Consensus 623 ~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~-K~e~vv~~~Lt~~Qr~lY~~~l~s~~~ 701 (1231)
.. .-|- ...++...........+. .
T Consensus 1115 ~~----------------------------------------------~RPvpL~~~i~~~~~~~~~~~~~----~---- 1140 (1724)
T 4f92_B 1115 PN----------------------------------------------VRPVPLELHIQGFNISHTQTRLL----S---- 1140 (1724)
T ss_dssp GG----------------------------------------------GCSSCEEEEEEEECCCSHHHHHH----T----
T ss_pred CC----------------------------------------------CCCCCeEEEEEeccCCCchhhhh----h----
Confidence 00 0111 122222222221110000 0
Q ss_pred HHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHH
Q 044798 702 EQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESF 781 (1231)
Q Consensus 702 ~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~ 781 (1231)
+ ...+...+.. ...+..+||||.++.....+...
T Consensus 1141 ----------------~-----------------------------~~~~~~~i~~-~~~~~~~lVF~~sR~~~~~~A~~ 1174 (1724)
T 4f92_B 1141 ----------------M-----------------------------AKPVYHAITK-HSPKKPVIVFVPSRKQTRLTAID 1174 (1724)
T ss_dssp ----------------T-----------------------------HHHHHHHHHH-HCSSSCEEEEESSHHHHHHHHHH
T ss_pred ----------------h-----------------------------cchHHHHHHH-hcCCCCeeeeCCCHHHHHHHHHH
Confidence 0 0001111111 12345677777776654443332
Q ss_pred HHH----------------------------------cCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccc
Q 044798 782 LIA----------------------------------SGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLG 827 (1231)
Q Consensus 782 L~~----------------------------------~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~G 827 (1231)
|.. ....+..+||+++..+|..+.+.|.++ .+.| |++|.+.+.|
T Consensus 1175 L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G-~i~V-LvaT~tlA~G 1252 (1724)
T 4f92_B 1175 ILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSG-AIQV-VVASRSLCWG 1252 (1724)
T ss_dssp HHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHT-SBCE-EEEEGGGSSS
T ss_pred HHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCC-CCeE-EEEChHHHcC
Confidence 211 124578899999999999999999998 5666 6788999999
Q ss_pred cCCCCCCEEEE----cCC------CCCcchHHHHHHhHHhhCCcccEEEEEEEeCC
Q 044798 828 TNLTGANRVII----FDP------DWNPSTDVQARERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 828 LNLt~AnrVIi----~Dp------~WNPs~d~QAigRa~RiGQkk~V~VYRLit~g 873 (1231)
|||++...||. ||. +.++..+.|++||++|.|....-.++.|+...
T Consensus 1253 VnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~ 1308 (1724)
T 4f92_B 1253 MNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGS 1308 (1724)
T ss_dssp CCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGG
T ss_pred CCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCceEEEEEecch
Confidence 99996555552 332 46788999999999999987776666565543
No 65
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.66 E-value=4.3e-17 Score=201.44 Aligned_cols=101 Identities=23% Similarity=0.254 Sum_probs=84.7
Q ss_pred cCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccccccCCCCCCEEE---
Q 044798 761 QGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGTNLTGANRVI--- 837 (1231)
Q Consensus 761 ~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GLNLt~AnrVI--- 837 (1231)
.+.++|||++++...+.+...|...|+.+..+||++++.+ |..+. .-+|++|+++++|||+. ++.||
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~--~~VLVATdVaerGIDId-V~~VI~~G 464 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIG--DVVVVATDALMTGYTGD-FDSVIDCN 464 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSS--CEEEEECTTHHHHCCCC-BSEEEECC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCC--CcEEEECChHHccCCCC-CcEEEecC
Confidence 3679999999999999999999999999999999998765 44433 25688999999999986 99888
Q ss_pred -------EcC-----------CCCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCH
Q 044798 838 -------IFD-----------PDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875 (1231)
Q Consensus 838 -------i~D-----------p~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTI 875 (1231)
+|| .|-++..|+||+||++| |..- . |.|++....
T Consensus 465 l~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~G-~--i~lvt~~e~ 516 (666)
T 3o8b_A 465 TCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRRG-I--YRFVTPGER 516 (666)
T ss_dssp EEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSCE-E--EEESCCCCB
T ss_pred cccccccccccccccccccccCcCCHHHHHHHhccCCC-CCCC-E--EEEEecchh
Confidence 566 67888999999999999 6543 3 788877643
No 66
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=3.9e-16 Score=162.41 Aligned_cols=124 Identities=20% Similarity=0.301 Sum_probs=105.7
Q ss_pred chHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecccc
Q 044798 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVG 824 (1231)
Q Consensus 745 S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvG 824 (1231)
..|+..|.+++... .+.++||||+++..++.|...|...|+.+..++|.++..+|..+++.|+++ .+.| |++|+++
T Consensus 19 ~~K~~~L~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g-~~~v-LvaT~~~ 94 (175)
T 2rb4_A 19 KDKYQALCNIYGSI--TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG-KEKV-LITTNVC 94 (175)
T ss_dssp HHHHHHHHHHHTTS--CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT-SCSE-EEECCSC
T ss_pred HhHHHHHHHHHHhC--CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeE-EEEecch
Confidence 34899999888764 467999999999999999999999999999999999999999999999987 4554 7789999
Q ss_pred ccccCCCCCCEEEEcCCC------CCcchHHHHHHhHHhhCCcccEEEEEEEeCCC
Q 044798 825 GLGTNLTGANRVIIFDPD------WNPSTDVQARERAWRIGQKQDVTVYRLITRGT 874 (1231)
Q Consensus 825 g~GLNLt~AnrVIi~Dp~------WNPs~d~QAigRa~RiGQkk~V~VYRLit~gT 874 (1231)
++|+|++.++.||+||+| |++..|.|++||++|.|+. -.+|.|+..+.
T Consensus 95 ~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~--g~~~~~~~~~~ 148 (175)
T 2rb4_A 95 ARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKK--GLAFNMIEVDE 148 (175)
T ss_dssp CTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CC--EEEEEEECGGG
T ss_pred hcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCC--ceEEEEEccch
Confidence 999999999999999999 6678999999999999965 45666777664
No 67
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.64 E-value=1e-15 Score=164.75 Aligned_cols=125 Identities=16% Similarity=0.238 Sum_probs=110.5
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecc
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTK 822 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTk 822 (1231)
..+.|+.+|.+++... .+.++||||+++...+.|...|...|+.+..++|.++..+|..+++.|+++ .+.| |++|+
T Consensus 14 ~~~~k~~~l~~ll~~~--~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~v-lvaT~ 89 (212)
T 3eaq_A 14 PVRGRLEVLSDLLYVA--SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQG-EVRV-LVATD 89 (212)
T ss_dssp CTTSHHHHHHHHHHHH--CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSS-SCCE-EEECT
T ss_pred CHHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCC-CCeE-EEecC
Confidence 3578999999999853 467999999999999999999999999999999999999999999999987 4555 77899
Q ss_pred ccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCC
Q 044798 823 VGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 823 vGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~g 873 (1231)
++++|||+++++.||+||+||++..|.|++||++|.|+.. .+|.|++..
T Consensus 90 ~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g--~~~~l~~~~ 138 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 138 (212)
T ss_dssp TTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--B--EEEEEECGG
T ss_pred hhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCC--eEEEEEchh
Confidence 9999999999999999999999999999999999999765 455566654
No 68
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.64 E-value=5e-14 Score=175.84 Aligned_cols=126 Identities=20% Similarity=0.208 Sum_probs=110.9
Q ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccc
Q 044798 744 RSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKV 823 (1231)
Q Consensus 744 ~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkv 823 (1231)
..+++..|...|..+...+.++||||.++.+.+.|..+|...|+++..++|.++..+|..+++.|..+ .+. +|++|++
T Consensus 421 ~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g-~~~-VLvaT~~ 498 (664)
T 1c4o_A 421 TENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLG-HYD-CLVGINL 498 (664)
T ss_dssp STTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTT-SCS-EEEESCC
T ss_pred ccchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcC-Cce-EEEccCh
Confidence 34677778888888888889999999999999999999999999999999999999999999999987 444 5789999
Q ss_pred cccccCCCCCCEEEEcCC-----CCCcchHHHHHHhHHhhCCcccEEEEEEEeCCC
Q 044798 824 GGLGTNLTGANRVIIFDP-----DWNPSTDVQARERAWRIGQKQDVTVYRLITRGT 874 (1231)
Q Consensus 824 Gg~GLNLt~AnrVIi~Dp-----~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gT 874 (1231)
+++|+|++.++.||++|. ++++..++|++||++|.|. -.++.|+...+
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~~---G~~i~~~~~~~ 551 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAR---GEVWLYADRVS 551 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTSTT---CEEEEECSSCC
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCCC---CEEEEEEcCCC
Confidence 999999999999999998 8999999999999999863 34555666654
No 69
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.43 E-value=2.5e-17 Score=170.74 Aligned_cols=118 Identities=19% Similarity=0.289 Sum_probs=107.5
Q ss_pred chHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecccc
Q 044798 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVG 824 (1231)
Q Consensus 745 S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvG 824 (1231)
+.|+..|.++++.. .+.++||||+++..++.|...|...|+.+..++|.++..+|..+++.|+++. +. +|++|+++
T Consensus 15 ~~k~~~l~~ll~~~--~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~-~~-vLvaT~~~ 90 (170)
T 2yjt_D 15 EHKTALLVHLLKQP--EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR-VN-VLVATDVA 90 (170)
Confidence 67888899988763 4679999999999999999999999999999999999999999999999874 44 57899999
Q ss_pred ccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEE
Q 044798 825 GLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTV 866 (1231)
Q Consensus 825 g~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~V 866 (1231)
++|+|++.+++||+||+|||+..+.|++||++|.||...+.+
T Consensus 91 ~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~ 132 (170)
T 2yjt_D 91 ARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAIS 132 (170)
Confidence 999999999999999999999999999999999999776544
No 70
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.62 E-value=5.8e-15 Score=199.81 Aligned_cols=326 Identities=16% Similarity=0.155 Sum_probs=193.3
Q ss_pred hhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHH-HHHhhc--------CCCCcEEEEeC-CcchHHHHHH
Q 044798 399 FNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFL-GALHFS--------NMYKPSIVVCP-VTLLRQWKRE 468 (1231)
Q Consensus 399 ~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L-~~L~~s--------~~~kpvLIV~P-~sLl~QW~~E 468 (1231)
+..|.|.|..++.-++ ..+.+.+++.+||+|||+.+...+ ..+... ....++|+|+| ..|..|-.++
T Consensus 77 ~~~ln~iQs~~~~~al---~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~ 153 (1724)
T 4f92_B 77 FKTLNRIQSKLYRAAL---ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGS 153 (1724)
T ss_dssp CSBCCHHHHHTHHHHH---TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH---cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHH
Confidence 3568899999987664 367789999999999998864443 344321 12357999999 4888888888
Q ss_pred HHHHcC--CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHH
Q 044798 469 AEKWYP--SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQL 546 (1231)
Q Consensus 469 ~~kw~p--~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~L 546 (1231)
|.+.+. +++|..++|..... . . .....+|+|||++.+
T Consensus 154 l~~~~~~~gi~V~~~tGd~~~~-----------------------------~---~---------~~~~~~IlVtTpEkl 192 (1724)
T 4f92_B 154 FGKRLATYGITVAELTGDHQLC-----------------------------K---E---------EISATQIIVCTPEKW 192 (1724)
T ss_dssp HHHHHTTTTCCEEECCSSCSSC-----------------------------C---T---------TGGGCSEEEECHHHH
T ss_pred HHHHHhhCCCEEEEEECCCCCC-----------------------------c---c---------ccCCCCEEEECHHHH
Confidence 887764 45676666532100 0 0 012358999999998
Q ss_pred HHHHhhh----hcCCccEEEEeCCcccCCcchHHH-----HHHH---hcc-cccEEEecccCccCChHHHHHhhhhhcCC
Q 044798 547 RLLGEKL----LDVEWGYAVLDEGHRIRNPNAEIS-----LVCK---QLQ-TVHRIIMTGAPIQNKLSELWSLFDFVFPG 613 (1231)
Q Consensus 547 r~~~~~L----~~~~wd~VILDEAH~IKN~~Sk~s-----kalk---~L~-t~~RllLTGTPiqNnl~EL~SLl~FL~P~ 613 (1231)
....... .-....+||+||+|.+.+....+. +.+. .+. ....++||||- .|+.|+-. ||...
T Consensus 193 d~llr~~~~~~~l~~v~~vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl--~N~~dvA~---wL~~~ 267 (1724)
T 4f92_B 193 DIITRKGGERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATL--PNYEDVAT---FLRVD 267 (1724)
T ss_dssp HHHTTSSTTHHHHTTEEEEEETTGGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSC--TTHHHHHH---HTTCC
T ss_pred HHHHcCCccchhhcCcCEEEEecchhcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEeccc--CCHHHHHH---HhCCC
Confidence 5543211 113578999999999865432222 2221 222 23568899994 24555433 33211
Q ss_pred CCCChhHHHHhhccccccCCCCCCChhhHhHHHHHHHHHHHHHhHHHHHHHHHHHhhcCCCc-eEEEEEecCCHHHHHHH
Q 044798 614 KLGVLPVFEAEFAVPITVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQLPKK-TEHVLFCSLTEEQRAVY 692 (1231)
Q Consensus 614 ~lg~~~~F~~~f~~pI~~g~~~~as~~~v~~~~k~~~~Lr~lI~p~~LRRtK~dV~~dLP~K-~e~vv~~~Lt~~Qr~lY 692 (1231)
.-.....|...| -|-. ..+++.+.-...... +
T Consensus 268 ~~~~~~~~~~~~----------------------------------------------RPvpL~~~~~~~~~~~~~~~-~ 300 (1724)
T 4f92_B 268 PAKGLFYFDNSF----------------------------------------------RPVPLEQTYVGITEKKAIKR-F 300 (1724)
T ss_dssp HHHHEEECCGGG----------------------------------------------CSSCEEEECCEECCCCHHHH-H
T ss_pred CCCCeEEECCCC----------------------------------------------ccCccEEEEeccCCcchhhh-h
Confidence 000000000000 1111 111111111110000 0
Q ss_pred HHHHhhHHHHHHhhcCcchhHHHHHHHHHhCChhhhhhhhhcCCCCCCCCCcchHHHHHHHHHHHHHhcCCeEEEEeccH
Q 044798 693 RAFLASSEVEQILDGSRNSLYGIDVMRKICNHPDLLEREQSCQIPDYGNPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQ 772 (1231)
Q Consensus 693 ~~~l~s~~~~~il~~~~~~l~~i~~LRkicnHPdLl~~~~~~~~~d~~~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~ 772 (1231)
..+..+ +.+.+.. ...++.+||||.++
T Consensus 301 -----------------------~~~~~~-----------------------------~~~~v~~-~~~~~~~LVF~~sR 327 (1724)
T 4f92_B 301 -----------------------QIMNEI-----------------------------VYEKIME-HAGKNQVLVFVHSR 327 (1724)
T ss_dssp -----------------------HHHHHH-----------------------------HHHHHTT-CCSSCCEEEECSST
T ss_pred -----------------------HHHHHH-----------------------------HHHHHHH-HhcCCcEEEECCCH
Confidence 000000 0111111 11246789998876
Q ss_pred HHHHHHHHHHHH----c---------------------------------CCcEEEEeCCCCHHHHHHHHHHHhCCCCce
Q 044798 773 QMLDILESFLIA----S---------------------------------GYEYRRMDGLTPVKQRMALIDEYNNSSDVF 815 (1231)
Q Consensus 773 ~~LdiLe~~L~~----~---------------------------------Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~ 815 (1231)
.....+...|.. . ...+...||+++..+|..+.+.|.++ .++
T Consensus 328 ~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G-~i~ 406 (1724)
T 4f92_B 328 KETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADK-HIQ 406 (1724)
T ss_dssp TTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTT-CCC
T ss_pred HHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCC-CCe
Confidence 544433333321 1 23477899999999999999999998 566
Q ss_pred EEEEeccccccccCCCCCCEEEE----cCCC------CCcchHHHHHHhHHhhCCcccEEEEEEEeCCCH
Q 044798 816 IFILTTKVGGLGTNLTGANRVII----FDPD------WNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875 (1231)
Q Consensus 816 VfLlSTkvGg~GLNLt~AnrVIi----~Dp~------WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTI 875 (1231)
| |++|.+++.||||++...||- |||. .++..+.|++|||+|.|.-..-.++.+...+..
T Consensus 407 v-lvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~ 475 (1724)
T 4f92_B 407 V-LVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGEL 475 (1724)
T ss_dssp E-EEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTC
T ss_pred E-EEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhH
Confidence 6 678999999999997776663 6654 478899999999999998766666666665543
No 71
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.62 E-value=3.8e-15 Score=157.43 Aligned_cols=161 Identities=14% Similarity=0.060 Sum_probs=114.8
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhc----CCCCcEEEEeCC-cchHHHHHHHHHHcC
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS----NMYKPSIVVCPV-TLLRQWKREAEKWYP 474 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s----~~~kpvLIV~P~-sLl~QW~~E~~kw~p 474 (1231)
..|+|||.+++.++. .+..+|+..+||+|||++++..+...... ....++|||||. .++.||.+++.++++
T Consensus 22 ~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 97 (207)
T 2gxq_A 22 TTPTPIQAAALPLAL----EGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP 97 (207)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHc----CCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhh
Confidence 357999999999873 46789999999999999866555544322 345689999997 889999999999998
Q ss_pred CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--
Q 044798 475 SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK-- 552 (1231)
Q Consensus 475 ~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~-- 552 (1231)
.+++..+++...... ....+....+|+|+||+.+......
T Consensus 98 ~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~i~v~T~~~l~~~~~~~~ 139 (207)
T 2gxq_A 98 HLKVVAVYGGTGYGK--------------------------------------QKEALLRGADAVVATPGRALDYLRQGV 139 (207)
T ss_dssp TSCEEEECSSSCSHH--------------------------------------HHHHHHHCCSEEEECHHHHHHHHHHTS
T ss_pred cceEEEEECCCChHH--------------------------------------HHHHhhCCCCEEEECHHHHHHHHHcCC
Confidence 888888776543110 0111224578999999998765543
Q ss_pred hhcCCccEEEEeCCcccCCc--chHHHHHHHhcc-cccEEEecccCccCChHHH
Q 044798 553 LLDVEWGYAVLDEGHRIRNP--NAEISLVCKQLQ-TVHRIIMTGAPIQNKLSEL 603 (1231)
Q Consensus 553 L~~~~wd~VILDEAH~IKN~--~Sk~skalk~L~-t~~RllLTGTPiqNnl~EL 603 (1231)
+....+++||+||||++.+. ...+...+..+. ....+++||||- +.+.++
T Consensus 140 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~-~~~~~~ 192 (207)
T 2gxq_A 140 LDLSRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLP-SWAKRL 192 (207)
T ss_dssp SCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCC-HHHHHH
T ss_pred cchhhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecC-HHHHHH
Confidence 33456899999999998543 334445555554 345688999984 334443
No 72
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.60 E-value=1.4e-14 Score=177.48 Aligned_cols=119 Identities=19% Similarity=0.244 Sum_probs=102.3
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecc
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTK 822 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTk 822 (1231)
....|...|.+.+......|.+|||||.++...+.|...|...|+++..++|.....+|.-+...|..+ . ++++|+
T Consensus 455 t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g---~-VtVATd 530 (822)
T 3jux_A 455 TQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG---M-VTIATN 530 (822)
T ss_dssp SHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT---C-EEEEET
T ss_pred cHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC---e-EEEEcc
Confidence 456799999999998877889999999999999999999999999999999996555554444556554 3 588999
Q ss_pred ccccccCCC--------CCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEE
Q 044798 823 VGGLGTNLT--------GANRVIIFDPDWNPSTDVQARERAWRIGQKQDVT 865 (1231)
Q Consensus 823 vGg~GLNLt--------~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~ 865 (1231)
++|+|+++. +..+||.+|.|-++..|.|++||++|.|..-...
T Consensus 531 mAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~ 581 (822)
T 3jux_A 531 MAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESI 581 (822)
T ss_dssp TTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEE
T ss_pred hhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEE
Confidence 999999997 6779999999999999999999999999776543
No 73
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.59 E-value=6.6e-15 Score=159.53 Aligned_cols=165 Identities=16% Similarity=0.143 Sum_probs=116.3
Q ss_pred cCCcccChhhhh--------hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhc-----CCCCcEEE
Q 044798 389 EGGLKIPESIFN--------NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS-----NMYKPSIV 455 (1231)
Q Consensus 389 ~~~~~iP~~i~~--------~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s-----~~~kpvLI 455 (1231)
+..+.+++.+.. .++|||.+++.++ ..+..+|+..+||+|||++++..+...... ....++||
T Consensus 27 f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~----~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~li 102 (236)
T 2pl3_A 27 FSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLA----LQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLI 102 (236)
T ss_dssp GGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEE
T ss_pred HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH----hCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEE
Confidence 444556666643 4789999999987 356789999999999999876655443322 23467999
Q ss_pred EeCC-cchHHHHHHHHHHcCC--CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhh
Q 044798 456 VCPV-TLLRQWKREAEKWYPS--FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVL 532 (1231)
Q Consensus 456 V~P~-sLl~QW~~E~~kw~p~--lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~ 532 (1231)
|||. .++.||.+++.++.+. +.+.+++|...... ....
T Consensus 103 l~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-------------------------------------~~~~-- 143 (236)
T 2pl3_A 103 ISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKH-------------------------------------EAER-- 143 (236)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHH-------------------------------------HHHH--
T ss_pred EeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHH-------------------------------------HHHh--
Confidence 9996 8999999999999854 67777766432110 0001
Q ss_pred cCCCCEEEeCHHHHHHHHhh---hhcCCccEEEEeCCcccCCc--chHHHHHHHhcc-cccEEEecccCc
Q 044798 533 RSESGLLITTYEQLRLLGEK---LLDVEWGYAVLDEGHRIRNP--NAEISLVCKQLQ-TVHRIIMTGAPI 596 (1231)
Q Consensus 533 ~~~~~VvItTYe~Lr~~~~~---L~~~~wd~VILDEAH~IKN~--~Sk~skalk~L~-t~~RllLTGTPi 596 (1231)
....+|+|+||+.+...... +....+++||+||||++.+. ...+...+..+. ...+++||||+-
T Consensus 144 ~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~ 213 (236)
T 2pl3_A 144 INNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSATQT 213 (236)
T ss_dssp HTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCC
T ss_pred CCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCC
Confidence 13568999999999776543 33457899999999998654 344555666664 345788999984
No 74
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.59 E-value=3.3e-15 Score=158.32 Aligned_cols=130 Identities=18% Similarity=0.131 Sum_probs=90.6
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhc----CCCCcEEEEeCC-cchHH-HHHHHHHHcC
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS----NMYKPSIVVCPV-TLLRQ-WKREAEKWYP 474 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s----~~~kpvLIV~P~-sLl~Q-W~~E~~kw~p 474 (1231)
.|+|||.+++.+++ .+.++|+.++||+|||++++.++..+... ...+++|||||. .++.| |.+++.+|.+
T Consensus 33 ~l~~~Q~~~i~~~~----~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~ 108 (216)
T 3b6e_A 33 QLRPYQMEVAQPAL----EGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 108 (216)
T ss_dssp CCCHHHHHHHHHHH----TTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHT
T ss_pred CchHHHHHHHHHHh----cCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhc
Confidence 68999999999874 45789999999999999988877665432 235799999997 77788 9999999875
Q ss_pred -CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh-
Q 044798 475 -SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK- 552 (1231)
Q Consensus 475 -~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~- 552 (1231)
.+.+..+++..... ..+.... ...+|+|+||+.+......
T Consensus 109 ~~~~v~~~~g~~~~~---------------------------------~~~~~~~-----~~~~i~v~T~~~l~~~~~~~ 150 (216)
T 3b6e_A 109 KWYRVIGLSGDTQLK---------------------------------ISFPEVV-----KSCDIIISTAQILENSLLNL 150 (216)
T ss_dssp TTSCEEECCC---CC---------------------------------CCHHHHH-----HHCSEEEEEHHHHHHHHHC-
T ss_pred cCceEEEEeCCcccc---------------------------------hhHHhhc-----cCCCEEEECHHHHHHHHhcc
Confidence 46776666543210 0111111 2368999999999776554
Q ss_pred -------hhcCCccEEEEeCCcccCCc
Q 044798 553 -------LLDVEWGYAVLDEGHRIRNP 572 (1231)
Q Consensus 553 -------L~~~~wd~VILDEAH~IKN~ 572 (1231)
+....|++||+||||++...
T Consensus 151 ~~~~~~~~~~~~~~~iIiDEah~~~~~ 177 (216)
T 3b6e_A 151 ENGEDAGVQLSDFSLIIIDECHHTNKE 177 (216)
T ss_dssp ------CCCGGGCSEEEETTC------
T ss_pred CcccccccchhcccEEEEECchhhccC
Confidence 33457899999999999654
No 75
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.58 E-value=1.3e-14 Score=155.31 Aligned_cols=172 Identities=11% Similarity=0.106 Sum_probs=117.5
Q ss_pred CCcccChhhhh--------hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcC-CCCcEEEEeCC-
Q 044798 390 GGLKIPESIFN--------NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN-MYKPSIVVCPV- 459 (1231)
Q Consensus 390 ~~~~iP~~i~~--------~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~-~~kpvLIV~P~- 459 (1231)
..+.+++.+.. .|+|||.+++..+. .+..+|+..+||+|||++++..+....... ...++|||||.
T Consensus 17 ~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~----~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 92 (220)
T 1t6n_A 17 RDFLLKPELLRAIVDCGFEHPSEVQHECIPQAI----LGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 92 (220)
T ss_dssp TTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred hhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCH
Confidence 33455655532 47899999998874 457799999999999998776665554332 23489999996
Q ss_pred cchHHHHHHHHHHc---CCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCC
Q 044798 460 TLLRQWKREAEKWY---PSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSES 536 (1231)
Q Consensus 460 sLl~QW~~E~~kw~---p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~ 536 (1231)
.++.||.+++.++. +++++.++++...... ..........
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~-------------------------------------~~~~~~~~~~ 135 (220)
T 1t6n_A 93 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKK-------------------------------------DEEVLKKNCP 135 (220)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHH-------------------------------------HHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCCChHH-------------------------------------HHHHHhcCCC
Confidence 88999999999986 4678888776543211 0111122346
Q ss_pred CEEEeCHHHHHHHHhh--hhcCCccEEEEeCCcccCCc-c--hHHHHHHHhcc-cccEEEecccCccCChHHH
Q 044798 537 GLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHRIRNP-N--AEISLVCKQLQ-TVHRIIMTGAPIQNKLSEL 603 (1231)
Q Consensus 537 ~VvItTYe~Lr~~~~~--L~~~~wd~VILDEAH~IKN~-~--Sk~skalk~L~-t~~RllLTGTPiqNnl~EL 603 (1231)
+|+|+|++.+...... +....+++||+||||++.+. + ..+...+..+. ....++|||||-. .+.++
T Consensus 136 ~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~-~~~~~ 207 (220)
T 1t6n_A 136 HIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSK-EIRPV 207 (220)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCT-TTHHH
T ss_pred CEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCH-HHHHH
Confidence 8999999999765543 33457899999999998642 2 22333444443 4567889999844 34443
No 76
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.57 E-value=2.8e-14 Score=153.02 Aligned_cols=166 Identities=12% Similarity=0.092 Sum_probs=112.9
Q ss_pred ccCCcccChhhh--------hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHH-HHHHHHhhcCCCCcEEEEeC
Q 044798 388 LEGGLKIPESIF--------NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVL-SFLGALHFSNMYKPSIVVCP 458 (1231)
Q Consensus 388 ~~~~~~iP~~i~--------~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaI-A~L~~L~~s~~~kpvLIV~P 458 (1231)
.+..+.+++.+. ..|+|||.+++..+. .+..+|+..+||+|||++++ .++..+.......++|||||
T Consensus 15 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~----~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~P 90 (224)
T 1qde_A 15 KFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPII----EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAP 90 (224)
T ss_dssp CGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECS
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHh----cCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEEC
Confidence 345566777764 357999999998873 45789999999999999844 44444433344568999999
Q ss_pred C-cchHHHHHHHHHHcC--CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCC
Q 044798 459 V-TLLRQWKREAEKWYP--SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSE 535 (1231)
Q Consensus 459 ~-sLl~QW~~E~~kw~p--~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~ 535 (1231)
. .++.||.+++.++.+ ++++..+++....... . ..+ ..
T Consensus 91 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~-------------------------------------~-~~~-~~ 131 (224)
T 1qde_A 91 TRELALQIQKVVMALAFHMDIKVHACIGGTSFVED-------------------------------------A-EGL-RD 131 (224)
T ss_dssp SHHHHHHHHHHHHHHTTTSCCCEEEECC------------------------------------------------C-TT
T ss_pred CHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHH-------------------------------------H-hcC-CC
Confidence 6 888999999999975 4566666654321000 0 001 12
Q ss_pred CCEEEeCHHHHHHHHhh--hhcCCccEEEEeCCcccCCc--chHHHHHHHhcc-cccEEEecccCc
Q 044798 536 SGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHRIRNP--NAEISLVCKQLQ-TVHRIIMTGAPI 596 (1231)
Q Consensus 536 ~~VvItTYe~Lr~~~~~--L~~~~wd~VILDEAH~IKN~--~Sk~skalk~L~-t~~RllLTGTPi 596 (1231)
.+|+|+|++.+...... +....+++||+||||++.+. ...+...+..+. ....++||||+-
T Consensus 132 ~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~ 197 (224)
T 1qde_A 132 AQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 197 (224)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCC
T ss_pred CCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecC
Confidence 68999999998765432 33346899999999998543 334455555554 345688999984
No 77
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.57 E-value=2.5e-14 Score=154.86 Aligned_cols=164 Identities=12% Similarity=0.100 Sum_probs=116.0
Q ss_pred cCCcccChhhh--------hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHH-HHHhhcCCCCcEEEEeCC
Q 044798 389 EGGLKIPESIF--------NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFL-GALHFSNMYKPSIVVCPV 459 (1231)
Q Consensus 389 ~~~~~iP~~i~--------~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L-~~L~~s~~~kpvLIV~P~ 459 (1231)
+..+.+++.+. ..++|||.+++..+ ..+.++|+..+||+|||++++..+ ..+.......++|||||.
T Consensus 26 f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~----~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 101 (230)
T 2oxc_A 26 FESLLLSRPVLEGLRAAGFERPSPVQLKAIPLG----RCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPT 101 (230)
T ss_dssp GGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSS
T ss_pred HhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHH----hCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 44455666653 34799999999887 346789999999999999854443 444334445789999996
Q ss_pred -cchHHHHHHHHHHc---CCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCC
Q 044798 460 -TLLRQWKREAEKWY---PSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSE 535 (1231)
Q Consensus 460 -sLl~QW~~E~~kw~---p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~ 535 (1231)
.|+.||.+++.++. +++++.+++|....... .. ....
T Consensus 102 ~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~--------------------------------------~~-~~~~ 142 (230)
T 2oxc_A 102 REIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQD--------------------------------------KT-RLKK 142 (230)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHH--------------------------------------HH-HTTS
T ss_pred HHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHH--------------------------------------HH-hccC
Confidence 89999999999986 36778777765432110 00 1134
Q ss_pred CCEEEeCHHHHHHHHhh--hhcCCccEEEEeCCcccCCc---chHHHHHHHhcc-cccEEEecccC
Q 044798 536 SGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHRIRNP---NAEISLVCKQLQ-TVHRIIMTGAP 595 (1231)
Q Consensus 536 ~~VvItTYe~Lr~~~~~--L~~~~wd~VILDEAH~IKN~---~Sk~skalk~L~-t~~RllLTGTP 595 (1231)
.+|+|+|++.+...... +....+++||+||||++.+. ...+...+..+. ....++||||+
T Consensus 143 ~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~ 208 (230)
T 2oxc_A 143 CHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATY 208 (230)
T ss_dssp CSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred CCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEecc
Confidence 68999999999776532 33346889999999999543 344555666665 45578899996
No 78
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.56 E-value=1.5e-14 Score=159.13 Aligned_cols=166 Identities=17% Similarity=0.114 Sum_probs=117.4
Q ss_pred cCCcccChhhhh--------hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHH-HhhcCCCCcEEEEeCC
Q 044798 389 EGGLKIPESIFN--------NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA-LHFSNMYKPSIVVCPV 459 (1231)
Q Consensus 389 ~~~~~iP~~i~~--------~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~-L~~s~~~kpvLIV~P~ 459 (1231)
+..+.+++.+.. .++|||.+++..+. .+.++|+..+||+|||++++..+.. +........+|||||.
T Consensus 45 f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~----~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Pt 120 (249)
T 3ber_A 45 FKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLAL----QGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPT 120 (249)
T ss_dssp TGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSS
T ss_pred HHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh----CCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCC
Confidence 444566776643 57999999998873 5678999999999999986655544 3333445679999996
Q ss_pred -cchHHHHHHHHHHcC--CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCC
Q 044798 460 -TLLRQWKREAEKWYP--SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSES 536 (1231)
Q Consensus 460 -sLl~QW~~E~~kw~p--~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~ 536 (1231)
.++.||.+++.++.. ++++.++++...... ....+....
T Consensus 121 r~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~--------------------------------------~~~~~~~~~ 162 (249)
T 3ber_A 121 RELAFQISEQFEALGSSIGVQSAVIVGGIDSMS--------------------------------------QSLALAKKP 162 (249)
T ss_dssp HHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHH--------------------------------------HHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCChHH--------------------------------------HHHHhcCCC
Confidence 888999999999875 466666665432110 111123567
Q ss_pred CEEEeCHHHHHHHHhh---hhcCCccEEEEeCCcccCCc--chHHHHHHHhcc-cccEEEecccCc
Q 044798 537 GLLITTYEQLRLLGEK---LLDVEWGYAVLDEGHRIRNP--NAEISLVCKQLQ-TVHRIIMTGAPI 596 (1231)
Q Consensus 537 ~VvItTYe~Lr~~~~~---L~~~~wd~VILDEAH~IKN~--~Sk~skalk~L~-t~~RllLTGTPi 596 (1231)
+|+|+|++.+...... +....+++||+||||++.+. ...+...+..+. ....++||||+-
T Consensus 163 ~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~ 228 (249)
T 3ber_A 163 HIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSATMT 228 (249)
T ss_dssp SEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCC
T ss_pred CEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCC
Confidence 9999999999776543 23346889999999998653 334455555564 456688999984
No 79
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.55 E-value=1.3e-14 Score=164.55 Aligned_cols=125 Identities=16% Similarity=0.239 Sum_probs=108.2
Q ss_pred CcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecc
Q 044798 743 ERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTK 822 (1231)
Q Consensus 743 ~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTk 822 (1231)
..+.|+.+|.+++.... +.++||||.++...+.|...|...|+.+..++|.+++.+|..+++.|+++ .+.| |++|+
T Consensus 11 ~~~~K~~~L~~ll~~~~--~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g-~~~v-LVaT~ 86 (300)
T 3i32_A 11 PVRGRLEVLSDLLYVAS--PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQG-EVRV-LVATD 86 (300)
T ss_dssp CSSSHHHHHHHHHHHHC--CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHT-SCCE-EEECS
T ss_pred CHHHHHHHHHHHHHhcC--CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcC-CceE-EEEec
Confidence 34679999999998754 77999999999999999999999999999999999999999999999987 4444 78899
Q ss_pred ccccccCCCCCCEEEEcCCCCCcchHHHHHHhHHhhCCcccEEEEEEEeCC
Q 044798 823 VGGLGTNLTGANRVIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRG 873 (1231)
Q Consensus 823 vGg~GLNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiGQkk~V~VYRLit~g 873 (1231)
++++|||++++++||+||+||++..|.|++||++|.|+.. .+|.|++..
T Consensus 87 va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G--~~i~l~~~~ 135 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGG--RVVLLYGPR 135 (300)
T ss_dssp TTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----C--EEEEEECSS
T ss_pred hhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCc--eEEEEeChH
Confidence 9999999999999999999999999999999999999764 555667654
No 80
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.55 E-value=3.6e-13 Score=167.99 Aligned_cols=126 Identities=16% Similarity=0.167 Sum_probs=110.2
Q ss_pred chHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecccc
Q 044798 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVG 824 (1231)
Q Consensus 745 S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvG 824 (1231)
.+++..|...|..+...+.++||||.++.+.+.|..+|...|+++..++|.++..+|..+++.|..+ .+. +|++|+++
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g-~~~-VLVaT~~l 505 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLG-KYD-VLVGINLL 505 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHT-SCS-EEEESCCC
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcC-CeE-EEEecchh
Confidence 3566777777888877889999999999999999999999999999999999999999999999987 344 57899999
Q ss_pred ccccCCCCCCEEEEcCC-----CCCcchHHHHHHhHHhhCCcccEEEEEEEeCCCH
Q 044798 825 GLGTNLTGANRVIIFDP-----DWNPSTDVQARERAWRIGQKQDVTVYRLITRGTI 875 (1231)
Q Consensus 825 g~GLNLt~AnrVIi~Dp-----~WNPs~d~QAigRa~RiGQkk~V~VYRLit~gTI 875 (1231)
++|+|++.++.||++|. ++++..++|++||++|. ++-.++.|+...+.
T Consensus 506 ~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~---~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 506 REGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN---AEGRVIMYADKITK 558 (661)
T ss_dssp STTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS---TTCEEEEECSSCCH
T ss_pred hCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC---CCCEEEEEEeCCCH
Confidence 99999999999999998 89999999999999996 23445556776653
No 81
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.54 E-value=3.4e-14 Score=152.36 Aligned_cols=160 Identities=13% Similarity=0.076 Sum_probs=111.0
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhh-cCCCCcEEEEeCC-cchHHHHHHHHHHcC----
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF-SNMYKPSIVVCPV-TLLRQWKREAEKWYP---- 474 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~-s~~~kpvLIV~P~-sLl~QW~~E~~kw~p---- 474 (1231)
.++|||.+++.++.. +..+|+..+||+|||++++..+..... ......+|||||. .++.||.+++.++..
T Consensus 26 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 26 KPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp SCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 479999999988853 578999999999999986555544332 2334689999996 888999999999875
Q ss_pred --CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh
Q 044798 475 --SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK 552 (1231)
Q Consensus 475 --~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~ 552 (1231)
...+..+++........ ..+....+|+|+|++.+......
T Consensus 102 ~~~~~~~~~~g~~~~~~~~--------------------------------------~~~~~~~~Iiv~Tp~~l~~~l~~ 143 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKAL--------------------------------------EKLNVQPHIVIGTPGRINDFIRE 143 (219)
T ss_dssp GGCCCEEEECCCSHHHHTT--------------------------------------CCCSSCCSEEEECHHHHHHHHHT
T ss_pred ccceEEEEEeCCCCHHHHH--------------------------------------HHcCCCCCEEEeCHHHHHHHHHc
Confidence 45666666543211000 00123468999999999765542
Q ss_pred --hhcCCccEEEEeCCcccCCc--chHHHHHHHhcc-cccEEEecccCccCChHHH
Q 044798 553 --LLDVEWGYAVLDEGHRIRNP--NAEISLVCKQLQ-TVHRIIMTGAPIQNKLSEL 603 (1231)
Q Consensus 553 --L~~~~wd~VILDEAH~IKN~--~Sk~skalk~L~-t~~RllLTGTPiqNnl~EL 603 (1231)
+....+++||+||||++.+. ...+...+..+. ....++||||+ .+.+.++
T Consensus 144 ~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~-~~~~~~~ 198 (219)
T 1q0u_A 144 QALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATI-PEKLKPF 198 (219)
T ss_dssp TCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCC-CGGGHHH
T ss_pred CCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCC-CHHHHHH
Confidence 23346889999999998643 344555666664 34578899997 4444443
No 82
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.54 E-value=5.8e-14 Score=152.78 Aligned_cols=168 Identities=13% Similarity=0.061 Sum_probs=113.2
Q ss_pred ccCCcccChhhhh--------hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhh-cCCCCcEEEEeC
Q 044798 388 LEGGLKIPESIFN--------NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHF-SNMYKPSIVVCP 458 (1231)
Q Consensus 388 ~~~~~~iP~~i~~--------~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~-s~~~kpvLIV~P 458 (1231)
.+..+.+++.+.. .|+|||.+++..+. .+..+|+..+||+|||++++..+..... .....++|||||
T Consensus 31 ~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~----~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 106 (237)
T 3bor_A 31 NFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCI----KGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAP 106 (237)
T ss_dssp SGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHH----TTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECS
T ss_pred ChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEEC
Confidence 3455667776643 47999999998874 4678999999999999986555544332 224568999999
Q ss_pred C-cchHHHHHHHHHHcC--CCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCC
Q 044798 459 V-TLLRQWKREAEKWYP--SFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSE 535 (1231)
Q Consensus 459 ~-sLl~QW~~E~~kw~p--~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~ 535 (1231)
. .++.||.+++.++.. +..+..+.+...... .........
T Consensus 107 t~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~-------------------------------------~~~~l~~~~ 149 (237)
T 3bor_A 107 TRELAQQIQKVILALGDYMGATCHACIGGTNVRN-------------------------------------EMQKLQAEA 149 (237)
T ss_dssp SHHHHHHHHHHHHHHTTTTTCCEEEECC--------------------------------------------------CC
T ss_pred cHHHHHHHHHHHHHHhhhcCceEEEEECCCchHH-------------------------------------HHHHHhcCC
Confidence 6 889999999999975 345555554321100 001111233
Q ss_pred CCEEEeCHHHHHHHHhh--hhcCCccEEEEeCCcccC--CcchHHHHHHHhccc-ccEEEecccCc
Q 044798 536 SGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHRIR--NPNAEISLVCKQLQT-VHRIIMTGAPI 596 (1231)
Q Consensus 536 ~~VvItTYe~Lr~~~~~--L~~~~wd~VILDEAH~IK--N~~Sk~skalk~L~t-~~RllLTGTPi 596 (1231)
.+|+|+||+.+...... +....+++||+||||++. +....+...+..+.. ...++||||+-
T Consensus 150 ~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~ 215 (237)
T 3bor_A 150 PHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMP 215 (237)
T ss_dssp CSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred CCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence 68999999998765532 333468999999999984 344556666666654 45588999984
No 83
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.53 E-value=7.4e-14 Score=147.58 Aligned_cols=154 Identities=14% Similarity=0.008 Sum_probs=109.0
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHh-hcCCCCcEEEEeCC-cchHHHHHHHHHHcC---C
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALH-FSNMYKPSIVVCPV-TLLRQWKREAEKWYP---S 475 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~-~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p---~ 475 (1231)
.|+|||.+++..+. .+.++|+..+||+|||++++..+.... ......++|||||. .++.||.+++.++.. +
T Consensus 25 ~~~~~Q~~~i~~~~----~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 25 KPSPIQEESIPIAL----SGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCHHHHHHHHHHc----cCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 57999999998873 467899999999999988765554433 22334579999996 788999999998874 5
Q ss_pred CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh--h
Q 044798 476 FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK--L 553 (1231)
Q Consensus 476 lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~--L 553 (1231)
..+..+++....... ...+....+|+|+|++.+...... +
T Consensus 101 ~~~~~~~g~~~~~~~--------------------------------------~~~~~~~~~i~v~T~~~l~~~~~~~~~ 142 (206)
T 1vec_A 101 AKVMATTGGTNLRDD--------------------------------------IMRLDDTVHVVIATPGRILDLIKKGVA 142 (206)
T ss_dssp CCEEEECSSSCHHHH--------------------------------------HHHTTSCCSEEEECHHHHHHHHHTTCS
T ss_pred ceEEEEeCCccHHHH--------------------------------------HHhcCCCCCEEEeCHHHHHHHHHcCCc
Confidence 677777654332110 011234568999999999765542 2
Q ss_pred hcCCccEEEEeCCcccCCcc--hHHHHHHHhcc-cccEEEecccCc
Q 044798 554 LDVEWGYAVLDEGHRIRNPN--AEISLVCKQLQ-TVHRIIMTGAPI 596 (1231)
Q Consensus 554 ~~~~wd~VILDEAH~IKN~~--Sk~skalk~L~-t~~RllLTGTPi 596 (1231)
....+++||+||||++.+.+ ..+...+..+. ....++||||+-
T Consensus 143 ~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~ 188 (206)
T 1vec_A 143 KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATFP 188 (206)
T ss_dssp CCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCCC
T ss_pred CcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeCC
Confidence 33468999999999986543 33444555554 456788999984
No 84
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.53 E-value=1.2e-13 Score=151.40 Aligned_cols=161 Identities=18% Similarity=0.190 Sum_probs=110.9
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcC----------CCCcEEEEeCC-cchHHHHHH
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN----------MYKPSIVVCPV-TLLRQWKRE 468 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~----------~~kpvLIV~P~-sLl~QW~~E 468 (1231)
..|+|||.+++..+. .+.++|+..+||+|||++++..+....... ...++|||||. .|+.||.++
T Consensus 44 ~~~~~~Q~~~i~~i~----~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~ 119 (253)
T 1wrb_A 44 QRPTPIQKNAIPAIL----EHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 119 (253)
T ss_dssp CSCCHHHHHHHHHHH----TTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHH
Confidence 357999999998873 467899999999999998766555443321 23589999996 889999999
Q ss_pred HHHHcCC--CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHH
Q 044798 469 AEKWYPS--FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQL 546 (1231)
Q Consensus 469 ~~kw~p~--lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~L 546 (1231)
+.++... +.+..+++...... ....+....+|+|+|++.+
T Consensus 120 ~~~~~~~~~~~~~~~~g~~~~~~--------------------------------------~~~~~~~~~~Ivv~Tp~~l 161 (253)
T 1wrb_A 120 SQKFSLNTPLRSCVVYGGADTHS--------------------------------------QIREVQMGCHLLVATPGRL 161 (253)
T ss_dssp HHHHHTTSSCCEEEECSSSCSHH--------------------------------------HHHHHSSCCSEEEECHHHH
T ss_pred HHHHhccCCceEEEEECCCCHHH--------------------------------------HHHHhCCCCCEEEECHHHH
Confidence 9998753 56666665432110 0111235679999999999
Q ss_pred HHHHhh--hhcCCccEEEEeCCcccCCc--chHHHHHHHhcc-----cccEEEecccCccCChHHH
Q 044798 547 RLLGEK--LLDVEWGYAVLDEGHRIRNP--NAEISLVCKQLQ-----TVHRIIMTGAPIQNKLSEL 603 (1231)
Q Consensus 547 r~~~~~--L~~~~wd~VILDEAH~IKN~--~Sk~skalk~L~-----t~~RllLTGTPiqNnl~EL 603 (1231)
...... +....+++||+||||++.+. ...+...+..+. ....++|||||- +.+.++
T Consensus 162 ~~~l~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~-~~~~~~ 226 (253)
T 1wrb_A 162 VDFIEKNKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFP-KEIQKL 226 (253)
T ss_dssp HHHHHTTSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCC-HHHHHH
T ss_pred HHHHHcCCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCC-HHHHHH
Confidence 776543 23346789999999998643 344555555432 335789999974 334443
No 85
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.46 E-value=5.1e-13 Score=143.88 Aligned_cols=162 Identities=15% Similarity=0.094 Sum_probs=111.1
Q ss_pred cccChhhh--------hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhc-------CCCCcEEEE
Q 044798 392 LKIPESIF--------NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS-------NMYKPSIVV 456 (1231)
Q Consensus 392 ~~iP~~i~--------~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s-------~~~kpvLIV 456 (1231)
+.+++.+. ..++|||.+++..+ ..+..+|+..++|+|||+.++..+...... .....+|||
T Consensus 25 ~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~----~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil 100 (228)
T 3iuy_A 25 FQQYPDLLKSIIRVGILKPTPIQSQAWPII----LQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVL 100 (228)
T ss_dssp HTTCHHHHHHHHHHTCCSCCHHHHHHHHHH----HTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEE
T ss_pred hccCHHHHHHHHHCCCCCCCHHHHHHHHHH----hCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEE
Confidence 56666663 35799999999887 356789999999999999866554433221 245679999
Q ss_pred eCC-cchHHHHHHHHHHc-CCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcC
Q 044798 457 CPV-TLLRQWKREAEKWY-PSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRS 534 (1231)
Q Consensus 457 ~P~-sLl~QW~~E~~kw~-p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~ 534 (1231)
||. .|+.||.+++.++. +++++..+++...... ....+..
T Consensus 101 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~ 142 (228)
T 3iuy_A 101 TPTRELALHVEAECSKYSYKGLKSICIYGGRNRNG--------------------------------------QIEDISK 142 (228)
T ss_dssp CSSHHHHHHHHHHHHHHCCTTCCEEEECC--------------------------------------------CHHHHHS
T ss_pred eCCHHHHHHHHHHHHHhcccCceEEEEECCCChHH--------------------------------------HHHHhcC
Confidence 996 78899999999986 4567776665432110 0011234
Q ss_pred CCCEEEeCHHHHHHHHhh--hhcCCccEEEEeCCcccCCc--chHHHHHHHhccc-ccEEEecccC
Q 044798 535 ESGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHRIRNP--NAEISLVCKQLQT-VHRIIMTGAP 595 (1231)
Q Consensus 535 ~~~VvItTYe~Lr~~~~~--L~~~~wd~VILDEAH~IKN~--~Sk~skalk~L~t-~~RllLTGTP 595 (1231)
+.+|+|+|++.+...... +....+++||+||||++.+. ...+...+..+.. ...+++|||.
T Consensus 143 ~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~ 208 (228)
T 3iuy_A 143 GVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATW 208 (228)
T ss_dssp CCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCC
T ss_pred CCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeC
Confidence 579999999999765432 23346899999999998653 3345555666653 4557899996
No 86
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.43 E-value=1.2e-12 Score=142.76 Aligned_cols=168 Identities=17% Similarity=0.079 Sum_probs=115.7
Q ss_pred ccccCCcccChhhh--------hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhc------CCCC
Q 044798 386 VTLEGGLKIPESIF--------NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS------NMYK 451 (1231)
Q Consensus 386 ~~~~~~~~iP~~i~--------~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s------~~~k 451 (1231)
+..+..+.+|+.+. ..++|||.+++..+. .+..+|+...+|+|||+.++..+...... ....
T Consensus 28 ~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~----~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~ 103 (242)
T 3fe2_A 28 VLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVAL----SGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGP 103 (242)
T ss_dssp CSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHH----HTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCC
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCC
Confidence 33455567777774 347999999998774 46789999999999999866555443332 2346
Q ss_pred cEEEEeCC-cchHHHHHHHHHHc--CCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHH
Q 044798 452 PSIVVCPV-TLLRQWKREAEKWY--PSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLI 528 (1231)
Q Consensus 452 pvLIV~P~-sLl~QW~~E~~kw~--p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i 528 (1231)
.+|||||. .|+.||.+.+.++. .++++..+++...... .
T Consensus 104 ~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~--------------------------------------~ 145 (242)
T 3fe2_A 104 ICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGP--------------------------------------Q 145 (242)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHH--------------------------------------H
T ss_pred EEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHH--------------------------------------H
Confidence 79999995 78889999999886 3567766665432111 1
Q ss_pred HhhhcCCCCEEEeCHHHHHHHHhh--hhcCCccEEEEeCCcccCCc--chHHHHHHHhcc-cccEEEecccC
Q 044798 529 NRVLRSESGLLITTYEQLRLLGEK--LLDVEWGYAVLDEGHRIRNP--NAEISLVCKQLQ-TVHRIIMTGAP 595 (1231)
Q Consensus 529 ~~~~~~~~~VvItTYe~Lr~~~~~--L~~~~wd~VILDEAH~IKN~--~Sk~skalk~L~-t~~RllLTGTP 595 (1231)
...+..+.+|+|+|++.+...... +....+++||+||||++-+. ...+...+..+. ....+++|||+
T Consensus 146 ~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~ 217 (242)
T 3fe2_A 146 IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATW 217 (242)
T ss_dssp HHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCC
T ss_pred HHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeec
Confidence 111234578999999999765542 33346889999999998653 334445555553 34568899996
No 87
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.40 E-value=1.7e-12 Score=141.40 Aligned_cols=154 Identities=17% Similarity=0.169 Sum_probs=104.1
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhc--CCCCcEEEEeCC-cchHHHHHHHHHHcCC--
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS--NMYKPSIVVCPV-TLLRQWKREAEKWYPS-- 475 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s--~~~kpvLIV~P~-sLl~QW~~E~~kw~p~-- 475 (1231)
.++|||.+++..+. .+.++|+..++|+|||++++..+...... .....+|||||. .|+.||.+++.+++..
T Consensus 51 ~~~~~Q~~~i~~~~----~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 51 MPTPIQMQAIPVML----HGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp SCCHHHHHHHHHHH----TTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCHHHHHHHHHHh----CCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 47999999998773 46789999999999999865554443322 234579999996 8899999999999764
Q ss_pred CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh---
Q 044798 476 FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK--- 552 (1231)
Q Consensus 476 lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~--- 552 (1231)
+++..+++...... . .........+|+|+|++.+......
T Consensus 127 ~~~~~~~~~~~~~~--~-----------------------------------~~~~~~~~~~I~v~Tp~~l~~~l~~~~~ 169 (245)
T 3dkp_A 127 FRIHMIHKAAVAAK--K-----------------------------------FGPKSSKKFDILVTTPNRLIYLLKQDPP 169 (245)
T ss_dssp CCEECCCHHHHHHT--T-----------------------------------TSTTSCCCCCEEEECHHHHHHHHHSSSC
T ss_pred ceEEEEecCccHHH--H-----------------------------------hhhhhcCCCCEEEECHHHHHHHHHhCCC
Confidence 45554443321100 0 0001124568999999999776543
Q ss_pred -hhcCCccEEEEeCCcccCCc-----chHHHHHHHhc--ccccEEEecccC
Q 044798 553 -LLDVEWGYAVLDEGHRIRNP-----NAEISLVCKQL--QTVHRIIMTGAP 595 (1231)
Q Consensus 553 -L~~~~wd~VILDEAH~IKN~-----~Sk~skalk~L--~t~~RllLTGTP 595 (1231)
+....+++||+||||++.+. ...+...+..+ .....++||||+
T Consensus 170 ~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~ 220 (245)
T 3dkp_A 170 GIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATF 220 (245)
T ss_dssp SCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSC
T ss_pred CcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccC
Confidence 23346889999999998542 22333444444 234668899998
No 88
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.36 E-value=2.8e-12 Score=141.98 Aligned_cols=154 Identities=17% Similarity=0.168 Sum_probs=106.7
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhc-----CCCCcEEEEeCC-cchHHHHHHHHHHcC
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS-----NMYKPSIVVCPV-TLLRQWKREAEKWYP 474 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s-----~~~kpvLIV~P~-sLl~QW~~E~~kw~p 474 (1231)
.|+|+|.+++..+.. +..+|+..++|+|||+.++..+...... .....+|||||. .|+.||.+++.+++.
T Consensus 76 ~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~ 151 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMT 151 (262)
T ss_dssp BCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHh
Confidence 479999999987744 4678999999999999866555443322 134679999996 889999999999975
Q ss_pred C--CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhh
Q 044798 475 S--FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEK 552 (1231)
Q Consensus 475 ~--lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~ 552 (1231)
. ..+..+.|..... .....+..+.+|+|+|++.+......
T Consensus 152 ~~~~~~~~~~g~~~~~--------------------------------------~~~~~~~~~~~Iiv~Tp~~l~~~~~~ 193 (262)
T 3ly5_A 152 HHVHTYGLIMGGSNRS--------------------------------------AEAQKLGNGINIIVATPGRLLDHMQN 193 (262)
T ss_dssp TCCSCEEEECSSSCHH--------------------------------------HHHHHHHHCCSEEEECHHHHHHHHHH
T ss_pred hcCceEEEEECCCCHH--------------------------------------HHHHHhcCCCCEEEEcHHHHHHHHHc
Confidence 4 4555555433211 01111234478999999999765543
Q ss_pred ---hhcCCccEEEEeCCcccCCc--chHHHHHHHhccc-ccEEEecccCc
Q 044798 553 ---LLDVEWGYAVLDEGHRIRNP--NAEISLVCKQLQT-VHRIIMTGAPI 596 (1231)
Q Consensus 553 ---L~~~~wd~VILDEAH~IKN~--~Sk~skalk~L~t-~~RllLTGTPi 596 (1231)
+....+++||+||||++-+. ...+...+..+.. ...++||||+-
T Consensus 194 ~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~ 243 (262)
T 3ly5_A 194 TPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSATQT 243 (262)
T ss_dssp CTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCC
T ss_pred cCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCC
Confidence 23346889999999998653 3344555566643 45688999984
No 89
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.33 E-value=4.6e-12 Score=143.33 Aligned_cols=167 Identities=13% Similarity=0.101 Sum_probs=110.9
Q ss_pred cccCCcccChhhhh--------hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHH-HHHhhcCCCCcEEEEe
Q 044798 387 TLEGGLKIPESIFN--------NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFL-GALHFSNMYKPSIVVC 457 (1231)
Q Consensus 387 ~~~~~~~iP~~i~~--------~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L-~~L~~s~~~kpvLIV~ 457 (1231)
..+..+.+++.+.. .++|+|..++..++. ..+...|+...+|+|||+..+..+ ..+........+||||
T Consensus 92 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~--~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~ 169 (300)
T 3fmo_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLA--EPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLS 169 (300)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTS--SSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEEC
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHc--CCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEc
Confidence 34556678888743 468999999977632 123789999999999999865433 3333333345799999
Q ss_pred CC-cchHHHHHHHHHHc---CCCeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhc
Q 044798 458 PV-TLLRQWKREAEKWY---PSFHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLR 533 (1231)
Q Consensus 458 P~-sLl~QW~~E~~kw~---p~lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~ 533 (1231)
|. .|..|+.+.+..+. +.+.+.++.+...... ...
T Consensus 170 PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~ 208 (300)
T 3fmo_B 170 PTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLER-----------------------------------------GQK 208 (300)
T ss_dssp SSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCT-----------------------------------------TCC
T ss_pred CcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhh-----------------------------------------hhc
Confidence 96 78889888888875 4567766665432100 001
Q ss_pred CCCCEEEeCHHHHHHHHhh---hhcCCccEEEEeCCcccCCc-c--hHHHHHHHhccc-ccEEEecccCc
Q 044798 534 SESGLLITTYEQLRLLGEK---LLDVEWGYAVLDEGHRIRNP-N--AEISLVCKQLQT-VHRIIMTGAPI 596 (1231)
Q Consensus 534 ~~~~VvItTYe~Lr~~~~~---L~~~~wd~VILDEAH~IKN~-~--Sk~skalk~L~t-~~RllLTGTPi 596 (1231)
...+|+|+|++.+...... +....+.+|||||||++.+. . ......+..+.. ...+++|||+-
T Consensus 209 ~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~ 278 (300)
T 3fmo_B 209 ISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE 278 (300)
T ss_dssp CCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCC
T ss_pred CCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCC
Confidence 3458999999999776643 22346789999999998642 2 223333334433 45688999984
No 90
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.24 E-value=3.4e-10 Score=141.42 Aligned_cols=146 Identities=21% Similarity=0.211 Sum_probs=91.1
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHH---HHHHHHHHcCCC
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQ---WKREAEKWYPSF 476 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~Q---W~~E~~kw~p~l 476 (1231)
..+|-|..|+--|. ++. |....+|.|||+++...+..... ....++||||+ .|..| |...|.+++ ++
T Consensus 79 ~Pt~VQ~~~ip~Ll----qG~--IaeakTGeGKTLvf~Lp~~L~aL--~G~qv~VvTPTreLA~Qdae~m~~l~~~l-GL 149 (997)
T 2ipc_A 79 RHFDVQLIGGAVLH----EGK--IAEMKTGEGKTLVATLAVALNAL--TGKGVHVVTVNDYLARRDAEWMGPVYRGL-GL 149 (997)
T ss_dssp CCCHHHHHHHHHHH----TTS--EEECCSTHHHHHHHHHHHHHHHT--TCSCCEEEESSHHHHHHHHHHHHHHHHTT-TC
T ss_pred CCcHHHHhhccccc----CCc--eeeccCCCchHHHHHHHHHHHHH--hCCCEEEEeCCHHHHHHHHHHHHHHHHhc-CC
Confidence 45788988886652 333 88899999999976544422111 23579999997 44444 666666655 57
Q ss_pred eEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHH-HHHhh---
Q 044798 477 HVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLR-LLGEK--- 552 (1231)
Q Consensus 477 rV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr-~~~~~--- 552 (1231)
.+.++.|+.... .+ ......+|++.|++.|. .+...
T Consensus 150 sv~~i~Gg~~~~-~r---------------------------------------~~ay~~DIvyGTpgrlgfDyLrd~m~ 189 (997)
T 2ipc_A 150 SVGVIQHASTPA-ER---------------------------------------RKAYLADVTYVTNSELGFDYLRDNMA 189 (997)
T ss_dssp CEEECCTTCCHH-HH---------------------------------------HHHHTSSEEEEEHHHHHHHHHHHTSC
T ss_pred eEEEEeCCCCHH-HH---------------------------------------HHHcCCCEEEECchhhhhHHHHHhhh
Confidence 777776643311 00 01123689999999983 33221
Q ss_pred -----hhcC---CccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccCChHHHHHhhh
Q 044798 553 -----LLDV---EWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFD 608 (1231)
Q Consensus 553 -----L~~~---~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~ 608 (1231)
+... ...++|+||+|.|.-.. ...-+++|| |++.. ..+|..++
T Consensus 190 ~~~~~l~~r~d~~l~~lIIDEaDsmLiDe-----------artPLIISg-p~~~~-~~lY~~~~ 240 (997)
T 2ipc_A 190 ISPDQLVLRHDHPLHYAIIDEVDSILIDE-----------ARTPLIISG-PAEKA-TDLYYKMA 240 (997)
T ss_dssp SSTTTCCSCSSSSSCEEEETTHHHHTTSS-----------TTSCEEEEE-SCSSC-HHHHHHHH
T ss_pred cchhhcccccCCCcceEEEechHHHHHhC-----------CCCCeeeeC-CCccc-hHHHHHHH
Confidence 2233 67899999999764221 222399999 88766 44444333
No 91
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.11 E-value=5.5e-09 Score=127.50 Aligned_cols=91 Identities=10% Similarity=0.195 Sum_probs=55.1
Q ss_pred HHHHHHHHH-HhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEecccccccc
Q 044798 750 VVAQVLKVW-KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGGLGT 828 (1231)
Q Consensus 750 ~L~eLLk~~-~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg~GL 828 (1231)
.+.+.|..+ ...+.++|||+.+..+++.+...|.. +. +.+.|.. ..|..+++.|..+. ...|.+.|....+||
T Consensus 371 ~~~~~l~~~~~~~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~~~EGi 444 (540)
T 2vl7_A 371 IYSILLKRIYENSSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAKESEGV 444 (540)
T ss_dssp HHHHHHHHHHHTCSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC--------
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCceecce
Confidence 344444433 34567999999999999999888754 33 4556654 46889999998853 223334789999999
Q ss_pred CCCC----CCEEEEcCCCCCcc
Q 044798 829 NLTG----ANRVIIFDPDWNPS 846 (1231)
Q Consensus 829 NLt~----AnrVIi~Dp~WNPs 846 (1231)
|+++ +..||++..|+-+.
T Consensus 445 D~~~~~~~~~~Vii~~lPf~~~ 466 (540)
T 2vl7_A 445 EFREKENLFESLVLAGLPYPNV 466 (540)
T ss_dssp -------CEEEEEEESCCCCCT
T ss_pred ecCCCcccccEEEEECCCCCCC
Confidence 9997 78899999887554
No 92
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=98.65 E-value=5.1e-08 Score=105.84 Aligned_cols=150 Identities=16% Similarity=0.078 Sum_probs=90.6
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHH-HhhcCC--CCcEEEEeCC-cchHHHHHHHHHHcCC-
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGA-LHFSNM--YKPSIVVCPV-TLLRQWKREAEKWYPS- 475 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~-L~~s~~--~kpvLIV~P~-sLl~QW~~E~~kw~p~- 475 (1231)
.+++||.+++..+ ..+...++..++|+|||.+...++.. +...+. ...+|+++|. .+..|..+.+...+..
T Consensus 61 p~~~~q~~~i~~i----~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 61 PVKKFESEILEAI----SQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp GGGGGHHHHHHHH----HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred ChHHHHHHHHHHH----hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4789999999887 34667899999999999776555443 222222 2478999996 4556676777665421
Q ss_pred --CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhh
Q 044798 476 --FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKL 553 (1231)
Q Consensus 476 --lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L 553 (1231)
..+. +. . . .. ........+|+|+|++.+......
T Consensus 137 ~~~~~g-~~-~--------~------------------~~---------------~~~~~~~~~Ivv~Tpg~l~~~l~~- 172 (235)
T 3llm_A 137 PGKSCG-YS-V--------R------------------FE---------------SILPRPHASIMFCTVGVLLRKLEA- 172 (235)
T ss_dssp TTSSEE-EE-E--------T------------------TE---------------EECCCSSSEEEEEEHHHHHHHHHH-
T ss_pred cCceEE-Ee-e--------c------------------hh---------------hccCCCCCeEEEECHHHHHHHHHh-
Confidence 1110 00 0 0 00 000113357999999998776544
Q ss_pred hcCCccEEEEeCCccc-CCcchH--H-HHHHHhcccccEEEecccCccC
Q 044798 554 LDVEWGYAVLDEGHRI-RNPNAE--I-SLVCKQLQTVHRIIMTGAPIQN 598 (1231)
Q Consensus 554 ~~~~wd~VILDEAH~I-KN~~Sk--~-skalk~L~t~~RllLTGTPiqN 598 (1231)
...++++||+||||.. -+.+.. . ...+........+++|||+-.+
T Consensus 173 ~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~ 221 (235)
T 3llm_A 173 GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTS 221 (235)
T ss_dssp CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCH
T ss_pred hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHH
Confidence 2346899999999983 222211 1 1222222344568899998543
No 93
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=98.49 E-value=2.2e-07 Score=113.63 Aligned_cols=163 Identities=16% Similarity=0.073 Sum_probs=96.0
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHc--CCCe
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWY--PSFH 477 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~--p~lr 477 (1231)
.++|||.+.+.-+++....+..+|+...||+|||+..+..+.. ...++||++|+ .+..||.+++.++. .+++
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-----~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~ 77 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-----VKPKVLFVVRTHNEFYPIYRDLTKIREKRNIT 77 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-----HCSEEEEEESSGGGHHHHHHHHTTCCCSSCCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-----CCCeEEEEcCCHHHHHHHHHHHHHHhhhcCcc
Confidence 4799999988877776677888999999999999987655443 24689999996 78889999998764 3567
Q ss_pred EEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHH----------------HhhhcCCCCEEEe
Q 044798 478 VELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLI----------------NRVLRSESGLLIT 541 (1231)
Q Consensus 478 V~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i----------------~~~~~~~~~VvIt 541 (1231)
+.++.|....-.............+.....+.. ..... .....|.... .+......+|||+
T Consensus 78 ~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~-~~~~g--~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~ 154 (551)
T 3crv_A 78 FSFLVGKPSSCLYAEKGAESEDIPCKYCELKGS-IVEVK--TDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIAL 154 (551)
T ss_dssp EEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTC-CCCCC--CCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEE
T ss_pred EEEEccccccCcCchhcCCCcccccCCCCCccc-ccccc--ccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEe
Confidence 777665432210000000000000000000000 00000 0111222110 1222346799999
Q ss_pred CHHHHHHHHhh--h-hcCCccEEEEeCCcccCC
Q 044798 542 TYEQLRLLGEK--L-LDVEWGYAVLDEGHRIRN 571 (1231)
Q Consensus 542 TYe~Lr~~~~~--L-~~~~wd~VILDEAH~IKN 571 (1231)
||..+...... + ......+||+||||++-+
T Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 155 TYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp ETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred CchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99999765321 1 123567899999999976
No 94
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=97.88 E-value=3.6e-05 Score=95.44 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=63.9
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHc--CCCe
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWY--PSFH 477 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~--p~lr 477 (1231)
.++|+|.+.+.-++.....+..+|+...||+|||+..+..+...... ...+++|++|+ .++.|+.+++.++. .+++
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-~~~kvli~t~T~~l~~Qi~~el~~l~~~~~~~ 81 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-RKLKVLYLVRTNSQEEQVIKELRSLSSTMKIR 81 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-HTCEEEEEESSHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-cCCeEEEECCCHHHHHHHHHHHHHHhhccCeE
Confidence 46999999998777766778899999999999999876554433221 23689999996 78889999988774 3677
Q ss_pred EEEEecccc
Q 044798 478 VELLHDSAQ 486 (1231)
Q Consensus 478 V~il~gs~~ 486 (1231)
+.++.|..+
T Consensus 82 ~~~l~gr~~ 90 (620)
T 4a15_A 82 AIPMQGRVN 90 (620)
T ss_dssp EEECCCHHH
T ss_pred EEEEECCCc
Confidence 777766543
No 95
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.79 E-value=0.029 Score=69.22 Aligned_cols=82 Identities=16% Similarity=0.131 Sum_probs=58.1
Q ss_pred hhhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcC--CCCcEEEEeCCcc-hHHHHHHHHHHc
Q 044798 397 SIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN--MYKPSIVVCPVTL-LRQWKREAEKWY 473 (1231)
Q Consensus 397 ~i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~--~~kpvLIV~P~sL-l~QW~~E~~kw~ 473 (1231)
.+...|-|.|.++|. ...+..++-...|+|||.+++.-+..+...+ ....+|+|+++.. ..+..+.+....
T Consensus 5 ~~~~~Ln~~Q~~av~------~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 5 YLLDSLNDKQREAVA------APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp HHHTTCCHHHHHHHT------CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred HhhhcCCHHHHHHHh------CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 456789999999996 2344566777899999999998888887654 3357999999744 445555676664
Q ss_pred C----CCeEEEEecc
Q 044798 474 P----SFHVELLHDS 484 (1231)
Q Consensus 474 p----~lrV~il~gs 484 (1231)
+ ...|..+|+-
T Consensus 79 ~~~~~~~~v~Tfhs~ 93 (647)
T 3lfu_A 79 GTSQGGMWVGTFHGL 93 (647)
T ss_dssp CSCCTTCEEEEHHHH
T ss_pred ccccCCcEEEcHHHH
Confidence 3 3456666543
No 96
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.48 E-value=0.0071 Score=75.19 Aligned_cols=68 Identities=19% Similarity=0.131 Sum_probs=52.5
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHH
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKW 472 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw 472 (1231)
..|-+.|+++|..++. ...-.|+.-..|+|||.+++.+|..+...+ .++||++|. ..+.+....+...
T Consensus 188 ~~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~--~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQG--LKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHTT--CCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhCC--CeEEEEcCchHHHHHHHHHHHhc
Confidence 4689999999988754 333467888899999999998888887654 689999997 4456666667654
No 97
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=96.45 E-value=0.012 Score=72.89 Aligned_cols=181 Identities=19% Similarity=0.266 Sum_probs=95.7
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcch-HHHHHHHHHHcCCCeE
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLL-RQWKREAEKWYPSFHV 478 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl-~QW~~E~~kw~p~lrV 478 (1231)
..|-+.|+++|..++ ...-.++--..|+|||.++..++..+... ...++||++|.... .+-...+.+. +.++
T Consensus 179 ~~ln~~Q~~av~~~l----~~~~~li~GppGTGKT~~~~~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~--~~~~ 251 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT--GLKV 251 (624)
T ss_dssp CCCCHHHHHHHHHHH----TCSEEEEECCTTSCHHHHHHHHHHHHHTS-SSCCEEEEESSHHHHHHHHHHHHTT--TCCE
T ss_pred CCCCHHHHHHHHHHh----cCCCeEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEEEeCcHHHHHHHHHHHHhc--CCeE
Confidence 358899999998764 24456788889999999988887766532 45799999997544 4555555543 2333
Q ss_pred EEEecccch-h-------hhhhhhccCCCCCCCCCCC----C-CCCccCcccCCCcchhhHH---HHhhhcCCCCEEEeC
Q 044798 479 ELLHDSAQD-L-------GFRKKRAKSSDTDNDGEGS----H-DSDYEGNLSSRNPKKWDLL---INRVLRSESGLLITT 542 (1231)
Q Consensus 479 ~il~gs~~~-~-------~~~~kr~~~~~~~~~~~~~----~-~~~~~~~~~~~~~k~~~~~---i~~~~~~~~~VvItT 542 (1231)
.-+...... . ..... .. ..+.... . .....+.......+.+... ....+....+||++|
T Consensus 252 ~R~~~~~r~~~~~~~~~~tl~~~-~~----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vI~~T 326 (624)
T 2gk6_A 252 VRLCAKSREAIDSPVSFLALHNQ-IR----NMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT 326 (624)
T ss_dssp EECCCTGGGSCCCTTTTTBHHHH-HT----SCSSCHHHHHHHTTCC----CCHHHHHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred EeeccccchhhccchhhhhHHHH-HH----hccchHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHHHhcCCEEEEc
Confidence 222211100 0 00000 00 0000000 0 0000000000000111111 111223456889888
Q ss_pred HHHHHHHHhhhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccC
Q 044798 543 YEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQN 598 (1231)
Q Consensus 543 Ye~Lr~~~~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqN 598 (1231)
...+.. ..+....|++||+|||..+..+.+ .+..+....+++|-|=|.|-
T Consensus 327 ~~~~~~--~~l~~~~fd~viIDEAsQ~~e~~~----li~l~~~~~~~ilvGD~~QL 376 (624)
T 2gk6_A 327 CVGAGD--PRLAKMQFRSILIDESTQATEPEC----MVPVVLGAKQLILVGDHCQL 376 (624)
T ss_dssp TGGGGC--GGGTTCCCSEEEETTGGGSCHHHH----HHHHTTTBSEEEEEECTTSC
T ss_pred Chhhcc--hhhhcCCCCEEEEecccccCcHHH----HHHHHhcCCeEEEecChhcc
Confidence 765532 235567899999999977755431 22223445789999998873
No 98
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.36 E-value=0.013 Score=69.64 Aligned_cols=65 Identities=18% Similarity=0.188 Sum_probs=49.8
Q ss_pred hhhchHHHHHHHHHHHHHHcCCC-cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHH
Q 044798 399 FNNLFDYQKVGVQWLWELHCQRA-GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQ 464 (1231)
Q Consensus 399 ~~~L~pyQkegV~wL~el~~~~~-GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~Q 464 (1231)
+..|-+-|+++|..+......+. ..+|-...|+|||..+.+++..+...+. ..+++++|......
T Consensus 23 ~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~-~~il~~a~T~~Aa~ 88 (459)
T 3upu_A 23 FDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGE-TGIILAAPTHAAKK 88 (459)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTC-CCEEEEESSHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC-ceEEEecCcHHHHH
Confidence 45689999999988766544443 6678889999999988888887766543 58999999866543
No 99
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.33 E-value=0.0047 Score=76.36 Aligned_cols=65 Identities=23% Similarity=0.195 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhc--CCCCcEEEEeCCcchHH-HHHHHHH
Q 044798 403 FDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS--NMYKPSIVVCPVTLLRQ-WKREAEK 471 (1231)
Q Consensus 403 ~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s--~~~kpvLIV~P~sLl~Q-W~~E~~k 471 (1231)
-+.|+.++.-+. .+.-.|+.-..|+|||.++..++..+... ....++++++|+...-. -.+.+..
T Consensus 151 ~~~Q~~Ai~~~l----~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 151 INWQKVAAAVAL----TRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CCHHHHHHHHHH----TBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHh----cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHH
Confidence 367999987663 45677889999999998776666665432 33458999999755444 3334443
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.28 E-value=0.011 Score=72.43 Aligned_cols=62 Identities=13% Similarity=-0.033 Sum_probs=48.7
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHH
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKRE 468 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E 468 (1231)
.|-+.|+.++..+. ...-.++.-..|+|||..+.+++..+... ..+++++||+........+
T Consensus 189 ~L~~~Q~~Av~~~~----~~~~~~I~G~pGTGKTt~i~~l~~~l~~~--g~~Vl~~ApT~~Aa~~L~e 250 (574)
T 3e1s_A 189 GLSEEQASVLDQLA----GHRLVVLTGGPGTGKSTTTKAVADLAESL--GLEVGLCAPTGKAARRLGE 250 (574)
T ss_dssp TCCHHHHHHHHHHT----TCSEEEEECCTTSCHHHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH----hCCEEEEEcCCCCCHHHHHHHHHHHHHhc--CCeEEEecCcHHHHHHhHh
Confidence 57899999998873 45667888899999999888777766553 3789999998777666554
No 101
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.20 E-value=0.029 Score=65.55 Aligned_cols=157 Identities=15% Similarity=0.146 Sum_probs=90.5
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCc-chHHHHHHHHHHc---CC-
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVT-LLRQWKREAEKWY---PS- 475 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~s-Ll~QW~~E~~kw~---p~- 475 (1231)
.|.|||+..+..+.. .+-.++.-.-+.|||..+.+++...........+++++|.. ....+.+.+..++ |.
T Consensus 163 ~L~p~Qk~il~~l~~----~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~l 238 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDF 238 (385)
T ss_dssp CCCHHHHHHHHHHHH----SSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCHHHHHHHHhhcc----CcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHh
Confidence 689999998887642 24477788899999988766665544444456799999963 3344446666654 32
Q ss_pred CeEEEEecccchhhhhhhhccCCCCCCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhc
Q 044798 476 FHVELLHDSAQDLGFRKKRAKSSDTDNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLD 555 (1231)
Q Consensus 476 lrV~il~gs~~~~~~~~kr~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~ 555 (1231)
++..+.... .... .+..+..+.+.+- ....+..
T Consensus 239 l~~~~~~~~----------------------------------~~~I--------~f~nGs~i~~lsa-----~~~slrG 271 (385)
T 2o0j_A 239 LQPGIVEWN----------------------------------KGSI--------ELDNGSSIGAYAS-----SPDAVRG 271 (385)
T ss_dssp TSCCEEEEC----------------------------------SSEE--------EETTSCEEEEEEC-----SHHHHHT
T ss_pred hhhhhccCC----------------------------------ccEE--------EeCCCCEEEEEEC-----CCCCccC
Confidence 110000000 0000 0111222222221 2234556
Q ss_pred CCccEEEEeCCcccCCcchHHHHHHHh-cc--cccEEEecccCccCChHHHHHhhhhhc
Q 044798 556 VEWGYAVLDEGHRIRNPNAEISLVCKQ-LQ--TVHRIIMTGAPIQNKLSELWSLFDFVF 611 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN~~Sk~skalk~-L~--t~~RllLTGTPiqNnl~EL~SLl~FL~ 611 (1231)
...+++|+||+|.+.+. .....++.. +. ...++++.+||-..+ .+|.+.....
T Consensus 272 ~~~~~viiDE~a~~~~~-~el~~al~~~ls~~~~~kiiiiSTP~g~n--~fy~l~~~a~ 327 (385)
T 2o0j_A 272 NSFAMIYIEDCAFIPNF-HDSWLAIQPVISSGRRSKIIITTTPNGLN--HFYDIWTAAV 327 (385)
T ss_dssp SCCSEEEEESGGGSTTH-HHHHHHHHHHHHSTTCCEEEEEECCCSSS--HHHHHHHHHH
T ss_pred CCCCEEEechhhhcCCC-HHHHHHHHHHhhcCCCCcEEEEeCCCCch--hHHHHHHHHh
Confidence 77899999999999873 233444433 22 346888889996553 5666665543
No 102
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.98 E-value=0.03 Score=71.31 Aligned_cols=178 Identities=16% Similarity=0.214 Sum_probs=95.0
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcch-HHHHHHHHHHcCCCeE
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLL-RQWKREAEKWYPSFHV 478 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl-~QW~~E~~kw~p~lrV 478 (1231)
..|-+.|.++|..++ ...-.++--..|+|||.++..++..+... ...++||++|.... .+-...+.+. ++++
T Consensus 359 ~~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~~i~~~i~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~--g~~i 431 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVL----QRPLSLIQGPPGTGKTVTSATIVYHLSKI-HKDRILVCAPSNVAVDHLAAKLRDL--GLKV 431 (802)
T ss_dssp CCCCHHHHHHHHHHT----TCSEEEEECSTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSHHHHHHHHHHHHHT--TCCE
T ss_pred ccCCHHHHHHHHHHh----cCCCEEEECCCCCCHHHHHHHHHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhh--CccE
Confidence 468899999998763 33446788899999999988877766542 34799999997554 4555556654 2333
Q ss_pred EEEecccch--------hhhhhhhccCCCCCCCCCCCCCCCc------cCcccCCCcchhhHH---HHhhhcCCCCEEEe
Q 044798 479 ELLHDSAQD--------LGFRKKRAKSSDTDNDGEGSHDSDY------EGNLSSRNPKKWDLL---INRVLRSESGLLIT 541 (1231)
Q Consensus 479 ~il~gs~~~--------~~~~~kr~~~~~~~~~~~~~~~~~~------~~~~~~~~~k~~~~~---i~~~~~~~~~VvIt 541 (1231)
.-+...... ...... .. ... ......+ .+.......+.+... ....+....+||++
T Consensus 432 lR~g~~~r~~i~~~~~~~tl~~~-~~----~~~--~~~l~~l~~~~~~~~~ls~~~~~~~~~~~~~~~~~~l~~a~VI~~ 504 (802)
T 2xzl_A 432 VRLTAKSREDVESSVSNLALHNL-VG----RGA--KGELKNLLKLKDEVGELSASDTKRFVKLVRKTEAEILNKADVVCC 504 (802)
T ss_dssp EECCCGGGTTSCCTTGGGBHHHH-HH----TTC--CTHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTCSEEEE
T ss_pred EeecccchhhhcchhhhhhHHHH-HH----hhc--HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhccCCEEEe
Confidence 322211100 000000 00 000 0000000 000000000011100 01112245689998
Q ss_pred CHHHHHHHHhhhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccC
Q 044798 542 TYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQN 598 (1231)
Q Consensus 542 TYe~Lr~~~~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqN 598 (1231)
|...+.. ..+.. .|++||+|||..+..+. ..+..+....+++|-|=|.|-
T Consensus 505 T~~~~~~--~~L~~-~fd~viIDEA~q~~e~~----~li~l~~~~~~lilvGD~~QL 554 (802)
T 2xzl_A 505 TCVGAGD--KRLDT-KFRTVLIDESTQASEPE----CLIPIVKGAKQVILVGDHQQL 554 (802)
T ss_dssp ETTGGGC--TTCCS-CCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred chhhcCh--HHHhc-cCCEEEEECccccchHH----HHHHHHhCCCEEEEEeCcccc
Confidence 8776542 22444 89999999998874332 223334456789999998773
No 103
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.75 E-value=0.034 Score=70.84 Aligned_cols=181 Identities=19% Similarity=0.241 Sum_probs=95.1
Q ss_pred hhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcch-HHHHHHHHHHcCCCeE
Q 044798 400 NNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLL-RQWKREAEKWYPSFHV 478 (1231)
Q Consensus 400 ~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl-~QW~~E~~kw~p~lrV 478 (1231)
..|-+.|+++|..++ ...-.++--..|+|||.++..++..+... ...++||++|.... .+-...+... ++.+
T Consensus 355 ~~Ln~~Q~~Av~~~l----~~~~~lI~GppGTGKT~ti~~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~--g~~v 427 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVL----QRPLSLIQGPPGTGKTVTSATIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT--GLKV 427 (800)
T ss_dssp CCCCHHHHHHHHHHH----TSSEEEEECCTTSCHHHHHHHHHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHTT--TCCE
T ss_pred cCCCHHHHHHHHHhc----cCCeEEEEcCCCCCHHHHHHHHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHh--Ccce
Confidence 358899999998763 23456788899999999988887776532 45799999997554 4444445443 2333
Q ss_pred EEEecccchh--------hhhhhhccCCCCCCCCCCCC-----CCCccCcccCCCcchhhHH---HHhhhcCCCCEEEeC
Q 044798 479 ELLHDSAQDL--------GFRKKRAKSSDTDNDGEGSH-----DSDYEGNLSSRNPKKWDLL---INRVLRSESGLLITT 542 (1231)
Q Consensus 479 ~il~gs~~~~--------~~~~kr~~~~~~~~~~~~~~-----~~~~~~~~~~~~~k~~~~~---i~~~~~~~~~VvItT 542 (1231)
.-+....... ....... ..+..... .....+.......+.+... ....+....+||++|
T Consensus 428 vRlg~~~r~~i~~~~~~~tlh~~~~-----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~VI~~T 502 (800)
T 2wjy_A 428 VRLCAKSREAIDSPVSFLALHNQIR-----NMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCT 502 (800)
T ss_dssp EECCCGGGGGCCCTTGGGBHHHHHH-----TCTTCHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEE
T ss_pred EeecccchhhhcchhhhhhHHHHHH-----cCccHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHhhhccCCEEEEc
Confidence 2222111000 0000000 00000000 0000000000000111111 111122345788888
Q ss_pred HHHHHHHHhhhhcCCccEEEEeCCcccCCcchHHHHHHHhcccccEEEecccCccC
Q 044798 543 YEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVCKQLQTVHRIIMTGAPIQN 598 (1231)
Q Consensus 543 Ye~Lr~~~~~L~~~~wd~VILDEAH~IKN~~Sk~skalk~L~t~~RllLTGTPiqN 598 (1231)
...+.. ..+....|++||+|||..+-.+. ..+..+....+++|-|=|.|-
T Consensus 503 ~~~~~~--~~l~~~~fd~viIDEAsQ~~e~~----~li~l~~~~~~~ilvGD~~QL 552 (800)
T 2wjy_A 503 CVGAGD--PRLAKMQFRSILIDESTQATEPE----CMVPVVLGAKQLILVGDHCQL 552 (800)
T ss_dssp TGGGGC--TTTTTCCCSEEEETTGGGSCHHH----HHHHHTTTBSEEEEEECTTSC
T ss_pred hhhhCC--hhhhcCCCCEEEEECCCCCCcHH----HHHHHHhcCCeEEEecccccC
Confidence 766532 23556689999999997775432 223334456789999998873
No 104
>1bby_A RAP30; average structure transcription regulation, DNA- binding domain, transcription; NMR {Homo sapiens} SCOP: a.4.5.15 PDB: 2bby_A
Probab=95.69 E-value=0.02 Score=50.53 Aligned_cols=60 Identities=18% Similarity=0.268 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHhcccCCCCChHHHHHHHHhhhccccCCC-CCceeeccCCC
Q 044798 1165 PEILIRQICTFMQQRGGSSNSACIVEHFKDRVPSKDLPLFKNLLKEIATLQKDPS-GSRWVLKLNFV 1230 (1231)
Q Consensus 1165 ~~~~~~~~~~~~~~~~~~~~t~~~~~~f~~~~~~~~~~~f~~~l~~~~~~~~~~~-~~~w~lk~~~~ 1230 (1231)
.++|+..|-.-+..+.. -+-.+|.+..+ .=..-.|++|++||.+++.|. .+.|.|||||+
T Consensus 6 ~~~l~d~lF~~Fek~~y-w~lK~L~~~t~-----QP~~yLKeiL~~Ia~~~k~g~~~~~weLKpEyr 66 (69)
T 1bby_A 6 KQHVLDMLFSAFEKHQY-YNLKDLVDITK-----QPVVYLKEILKEIGVQNVKGIHKNTWELKPEYR 66 (69)
T ss_dssp HHHHHHHHHHHHHHCSC-BCHHHHHHHCC-----SCHHHHHHHHHHHCCCBCCTTCCCBBCCCCSSC
T ss_pred HHHHHHHHHHHHhhcCC-CcHHHHHHHHc-----CcHHHHHHHHHHHHHHHcCCCCCCeeeCcHHHh
Confidence 46788888886665543 56667766553 356778999999999999864 69999999996
No 105
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.22 E-value=0.048 Score=67.11 Aligned_cols=69 Identities=19% Similarity=0.133 Sum_probs=48.5
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHc
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWY 473 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~ 473 (1231)
.|.|||+..+..++. ..-.++.-.-|.|||..+.+++.......+...+++++|. .....+...+..++
T Consensus 163 ~l~p~Q~~i~~~l~~----~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i 232 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSS----KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAI 232 (592)
T ss_dssp CCCHHHHHHHHHHHH----CSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHhhcc----ccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 689999998876632 3446777789999998876666555444445589999995 44444556676664
No 106
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.18 E-value=0.032 Score=58.19 Aligned_cols=35 Identities=31% Similarity=0.406 Sum_probs=26.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV 459 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~ 459 (1231)
.++.-.||.|||..++..+..+...+ .+++++.|.
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g--~~v~~~~~~ 40 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGK--KKVAVFKPK 40 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--CEEEEEEEC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEeec
Confidence 46788899999998887776654433 578888886
No 107
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.15 E-value=0.2 Score=54.06 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=27.7
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV 459 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~ 459 (1231)
+.-.++.-+||.|||..++.++..+...+ .+++|+.|.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g--~kVli~~~~ 49 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYAD--VKYLVFKPK 49 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTT--CCEEEEEEC
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcC--CEEEEEEec
Confidence 33346788999999999888877665443 577887774
No 108
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.23 E-value=0.096 Score=62.11 Aligned_cols=108 Identities=15% Similarity=0.153 Sum_probs=68.1
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeEEEEecccchhhhhhhhccCCCC
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDT 500 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV~il~gs~~~~~~~~kr~~~~~~ 500 (1231)
-.++.-..|+|||...+.++. .++.|||+|. .+...|.+.+.+.. ..
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~-------~~~~lVlTpT~~aa~~l~~kl~~~~----------~~--------------- 210 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVN-------FEEDLILVPGRQAAEMIRRRANASG----------II--------------- 210 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCC-------TTTCEEEESCHHHHHHHHHHHTTTS----------CC---------------
T ss_pred EEEEEcCCCCCHHHHHHHHhc-------cCCeEEEeCCHHHHHHHHHHhhhcC----------cc---------------
Confidence 346778899999987665442 2678999996 66677887774310 00
Q ss_pred CCCCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHHHHHHhhhhcCCccEEEEeCCcccCCcchHHHHHH
Q 044798 501 DNDGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQLRLLGEKLLDVEWGYAVLDEGHRIRNPNAEISLVC 580 (1231)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~Lr~~~~~L~~~~wd~VILDEAH~IKN~~Sk~skal 580 (1231)
....+-+.|++.+...........+++||+||+..+ +...+...+
T Consensus 211 ---------------------------------~~~~~~V~T~dsfL~~~~~~~~~~~d~liiDE~sm~--~~~~l~~l~ 255 (446)
T 3vkw_A 211 ---------------------------------VATKDNVRTVDSFLMNYGKGARCQFKRLFIDEGLML--HTGCVNFLV 255 (446)
T ss_dssp ---------------------------------CCCTTTEEEHHHHHHTTTSSCCCCCSEEEEETGGGS--CHHHHHHHH
T ss_pred ---------------------------------ccccceEEEeHHhhcCCCCCCCCcCCEEEEeCcccC--CHHHHHHHH
Confidence 000123567776654333222335899999999876 333333444
Q ss_pred HhcccccEEEecccCcc
Q 044798 581 KQLQTVHRIIMTGAPIQ 597 (1231)
Q Consensus 581 k~L~t~~RllLTGTPiq 597 (1231)
..+.. .+++|.|=|-|
T Consensus 256 ~~~~~-~~vilvGD~~Q 271 (446)
T 3vkw_A 256 EMSLC-DIAYVYGDTQQ 271 (446)
T ss_dssp HHTTC-SEEEEEECTTS
T ss_pred HhCCC-CEEEEecCccc
Confidence 44444 89999998876
No 109
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.62 E-value=0.38 Score=51.66 Aligned_cols=35 Identities=23% Similarity=0.318 Sum_probs=26.8
Q ss_pred EEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCc
Q 044798 424 IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVT 460 (1231)
Q Consensus 424 ILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~s 460 (1231)
++.-.||.|||..+|..+..+... ..++||+.|..
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~--g~kVli~k~~~ 66 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFA--KQHAIVFKPCI 66 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHT--TCCEEEEECC-
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEecc
Confidence 368899999999888877666543 46899999864
No 110
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.60 E-value=0.39 Score=50.55 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=27.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV 459 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~ 459 (1231)
.++.-.||.|||..++..+..+... ..+++|+.|.
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~--g~kV~v~k~~ 45 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIA--KQKIQVFKPE 45 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT--TCCEEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEec
Confidence 3567889999999888777665433 4689999886
No 111
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.02 E-value=0.48 Score=52.39 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=21.9
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcC
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSN 448 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~ 448 (1231)
+.+|.-+.|+|||..+-++...+...+
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~ 95 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLG 95 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 478899999999999888877775543
No 112
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.26 E-value=0.5 Score=51.34 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=25.4
Q ss_pred EEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC
Q 044798 424 IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV 459 (1231)
Q Consensus 424 ILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~ 459 (1231)
++.-.||.|||..+|..+.... ....+++|+-|.
T Consensus 23 v~~G~MgsGKTT~lL~~~~r~~--~~g~kvli~kp~ 56 (234)
T 2orv_A 23 VILGPMFSGKSTELMRRVRRFQ--IAQYKCLVIKYA 56 (234)
T ss_dssp EEECCTTSCHHHHHHHHHHHHH--TTTCCEEEEEET
T ss_pred EEECCCCCcHHHHHHHHHHHHH--HCCCeEEEEeec
Confidence 5678899999988877765543 345788888875
No 113
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.73 E-value=2.2 Score=49.14 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=25.0
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLR 463 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~ 463 (1231)
..+.+|.-+.|+|||..+-++...+ ..+++.|.+..+..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~-----~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAES-----NATFFNISAASLTS 186 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHT-----TCEEEEECSCCC--
T ss_pred CceEEEECCCCCCHHHHHHHHHHhh-----cCcEEEeeHHHhhc
Confidence 4578899999999998877664432 23555554444443
No 114
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=89.27 E-value=0.8 Score=56.62 Aligned_cols=80 Identities=10% Similarity=0.108 Sum_probs=49.7
Q ss_pred HHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEec--cccccccCCCC--C
Q 044798 758 WKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTT--KVGGLGTNLTG--A 833 (1231)
Q Consensus 758 ~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlST--kvGg~GLNLt~--A 833 (1231)
+...+..+|||..+..+++.+...|. .+..- ..-+++..+|..++++|. +. -.| |+++ ....+|||+++ .
T Consensus 444 ~~~~~g~~lvlF~Sy~~l~~v~~~l~--~~~~~-~~q~~~~~~~~~ll~~f~-~~-~~v-L~~v~~gsf~EGiD~~g~~l 517 (620)
T 4a15_A 444 ILKVKKNTIVYFPSYSLMDRVENRVS--FEHMK-EYRGIDQKELYSMLKKFR-RD-HGT-IFAVSGGRLSEGINFPGNEL 517 (620)
T ss_dssp HHHHCSCEEEEESCHHHHHHHTSSCC--SCCEE-CCTTCCSHHHHHHHHHHT-TS-CCE-EEEETTSCC--------CCC
T ss_pred HHhCCCCEEEEeCCHHHHHHHHHHHH--hcchh-ccCCCChhHHHHHHHHhc-cC-CcE-EEEEecCceeccccCCCCce
Confidence 33446679999998888888887776 23333 333444568999999999 43 234 4454 57899999985 7
Q ss_pred CEEEEcCCCC
Q 044798 834 NRVIIFDPDW 843 (1231)
Q Consensus 834 nrVIi~Dp~W 843 (1231)
..||+.-.|+
T Consensus 518 ~~viI~~lPf 527 (620)
T 4a15_A 518 EMIILAGLPF 527 (620)
T ss_dssp CEEEESSCCC
T ss_pred EEEEEEcCCC
Confidence 7899987665
No 115
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=87.80 E-value=3.4 Score=46.12 Aligned_cols=40 Identities=15% Similarity=-0.057 Sum_probs=27.2
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcc
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTL 461 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sL 461 (1231)
..+.+|.-+.|+|||..+-++...+... ..+++.|....+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~~~ 76 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADDF 76 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHHHH
Confidence 3578899999999998877777666443 345555543333
No 116
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.78 E-value=2.9 Score=49.01 Aligned_cols=45 Identities=24% Similarity=0.196 Sum_probs=32.6
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHH
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKRE 468 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E 468 (1231)
..+|.+|.-..|+|||+.|=|+...+ ..+++.|....++..|..|
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~-----~~~f~~v~~s~l~sk~vGe 225 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHT-----DCKFIRVSGAELVQKYIGE 225 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHH-----TCEEEEEEGGGGSCSSTTH
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhh-----CCCceEEEhHHhhccccch
Confidence 35789999999999999988777654 2466666666666555443
No 117
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=87.20 E-value=2.4 Score=47.92 Aligned_cols=46 Identities=11% Similarity=0.084 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHHHHHcCCC---cEEEEeCCCchHHHHHHHHHHHHhhc
Q 044798 402 LFDYQKVGVQWLWELHCQRA---GGIIGDEMGLGKTIQVLSFLGALHFS 447 (1231)
Q Consensus 402 L~pyQkegV~wL~el~~~~~---GgILADEMGLGKTIqaIA~L~~L~~s 447 (1231)
++|+|.+.+..+......+. ..++.-+.|+|||..+.+++..+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 58999999888877665543 36788999999999999988887643
No 118
>1nha_A TFIIF-alpha, transcription initiation factor IIF, alpha subunit; transcription factor, human general transcription factor TFIIF, RAP74; NMR {Homo sapiens} SCOP: a.4.5.30 PDB: 1onv_A
Probab=86.88 E-value=0.38 Score=43.47 Aligned_cols=55 Identities=13% Similarity=0.317 Sum_probs=45.1
Q ss_pred HHHHHHHhhcCCCCChHHHHHHhcccC---CC-CChHHHHHHHHhhhccccCCCC-Cceeec
Q 044798 1170 RQICTFMQQRGGSSNSACIVEHFKDRV---PS-KDLPLFKNLLKEIATLQKDPSG-SRWVLK 1226 (1231)
Q Consensus 1170 ~~~~~~~~~~~~~~~t~~~~~~f~~~~---~~-~~~~~f~~~l~~~~~~~~~~~~-~~w~lk 1226 (1231)
+.||.||.+.+ .+|++||..|+.++ +. +++..|-++||.|.-.++..+| -+.+|+
T Consensus 22 e~VRryL~rkP--mTT~dLl~KFK~r~~~~~~~e~v~~~a~ILKki~p~qk~~~g~~y~~Lk 81 (82)
T 1nha_A 22 DAVRRYLTRKP--MTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLK 81 (82)
T ss_dssp HHHHHHHHHSC--BCHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHCCEEEEETTEEEEECC
T ss_pred HHHHHHHHhCC--ccHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCHHhhccCCceEEEec
Confidence 78999999766 89999999999998 43 7899999999999999887443 344444
No 119
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=86.37 E-value=1.5 Score=46.34 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=24.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV 459 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~ 459 (1231)
-++.-.||+|||...|-.+......+ .+++++.|.
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~--~kvl~~kp~ 57 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQ--YKCLVIKYA 57 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTT--CCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcC--CeEEEEccc
Confidence 35688999999976665555444433 678887775
No 120
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.65 E-value=1.9 Score=42.94 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=20.5
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHh
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~ 445 (1231)
..+.+|.-+.|+|||..+-++...+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 44568889999999998877776654
No 121
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=85.13 E-value=5 Score=40.82 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=19.3
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHh
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~ 445 (1231)
..+|.-+.|+|||..+-++...+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 478899999999988777766553
No 122
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=84.17 E-value=3.4 Score=45.98 Aligned_cols=50 Identities=20% Similarity=0.150 Sum_probs=30.0
Q ss_pred CccEEEEeCCcccCCcc--hHHHHHHHhcccccEEEecccCccCChHHHHHh
Q 044798 557 EWGYAVLDEGHRIRNPN--AEISLVCKQLQTVHRIIMTGAPIQNKLSELWSL 606 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~~--Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SL 606 (1231)
...++||||+|.+-... ......+.......++++|.++...-...|.+-
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 57899999999994111 112233333345678888887765433444443
No 123
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.88 E-value=2.2 Score=48.42 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=20.4
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHhh
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
...+|.-+.|+|||..+-+++..+..
T Consensus 46 ~~vll~G~~G~GKT~la~~l~~~~~~ 71 (384)
T 2qby_B 46 FSNLFLGLTGTGKTFVSKYIFNEIEE 71 (384)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35788999999999988777766543
No 124
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=83.47 E-value=1.8 Score=48.62 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=19.4
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
.|.+|.-+.|+|||..+-++...+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 467899999999999887776543
No 125
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=83.33 E-value=6.3 Score=46.43 Aligned_cols=41 Identities=17% Similarity=0.023 Sum_probs=27.3
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCc
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVT 460 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~s 460 (1231)
....+|.-+.|+|||..+-++...+.......+++.|....
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK 170 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH
Confidence 35678999999999988777766664443334555544333
No 126
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=82.94 E-value=4.1 Score=43.77 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=25.1
Q ss_pred EEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCc
Q 044798 424 IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVT 460 (1231)
Q Consensus 424 ILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~s 460 (1231)
++.-+||.|||..+|-.+..+... ..+++|+-|..
T Consensus 32 vitG~M~sGKTT~Llr~~~r~~~~--g~kvli~kp~~ 66 (219)
T 3e2i_A 32 CITGSMFSGKSEELIRRLRRGIYA--KQKVVVFKPAI 66 (219)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHT--TCCEEEEEEC-
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc--CCceEEEEecc
Confidence 567889999998777666554443 36788888854
No 127
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=82.74 E-value=7 Score=38.69 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=21.3
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhh
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
..+.+|.-+.|+|||..+-+++..+..
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 356788999999999988777766643
No 128
>1i27_A Transcription factor IIF; general transcription factor, RAP74, RAP30, TFIIF, RNA polymerase II, winged-helix domain; 1.02A {Homo sapiens} SCOP: a.4.5.30 PDB: 1j2x_A 2k7l_A*
Probab=82.36 E-value=0.39 Score=42.50 Aligned_cols=55 Identities=13% Similarity=0.317 Sum_probs=45.0
Q ss_pred HHHHHHHhhcCCCCChHHHHHHhcccC---CC-CChHHHHHHHHhhhccccCCCC-Cceeec
Q 044798 1170 RQICTFMQQRGGSSNSACIVEHFKDRV---PS-KDLPLFKNLLKEIATLQKDPSG-SRWVLK 1226 (1231)
Q Consensus 1170 ~~~~~~~~~~~~~~~t~~~~~~f~~~~---~~-~~~~~f~~~l~~~~~~~~~~~~-~~w~lk 1226 (1231)
+.||.||.+.+ .||++||..|+.++ +. +++..|-++||.|.-.++..+| -+.+|+
T Consensus 13 e~VrryL~rkP--mTt~dLl~KFK~r~~~~~~~e~v~~~a~ILkki~p~q~~~~g~~y~~Lk 72 (73)
T 1i27_A 13 DAVRRYLTRKP--MTTKDLLKKFQTKKTGLSSEQTVNVLAQILKRLNPERKMINDKMHFSLK 72 (73)
T ss_dssp HHHHHHHHHSC--BCHHHHHHTSCHHHHCCCHHHHHHHHHHHHHHHCCEEEEETTEEEEESC
T ss_pred HHHHHHHHcCC--ccHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCHHhhccCCceEEEec
Confidence 78999999777 88999999999997 43 8899999999999999887443 344443
No 129
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=82.09 E-value=3.8 Score=45.06 Aligned_cols=24 Identities=25% Similarity=0.342 Sum_probs=19.8
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHh
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~ 445 (1231)
..+|.-+.|+|||..+-++...+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 578899999999998887776653
No 130
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=81.46 E-value=2.6 Score=43.96 Aligned_cols=28 Identities=7% Similarity=-0.100 Sum_probs=21.4
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHHhh
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
.+.+.+|.-+.|+|||..+-++...+..
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3556788999999999888777665543
No 131
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=80.64 E-value=7.5 Score=41.36 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=19.4
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
..+.+|.-+.|+|||..+-++...+
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4567889999999998877666543
No 132
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=80.54 E-value=1.9 Score=49.29 Aligned_cols=25 Identities=16% Similarity=0.159 Sum_probs=20.5
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
..|.+|.-+.|+|||..+-++...+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh
Confidence 3578899999999999888777655
No 133
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=80.48 E-value=2 Score=48.52 Aligned_cols=24 Identities=17% Similarity=0.128 Sum_probs=19.7
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
.|.+|.-+.|+|||..+-++...+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 577899999999999887776554
No 134
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=80.21 E-value=6.6 Score=49.85 Aligned_cols=99 Identities=13% Similarity=0.027 Sum_probs=73.4
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHH----HHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEE
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESF----LIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIF 817 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~----L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~Vf 817 (1231)
+..|||..+..-.+-.....|.++||.+.++..+.-+... +...|+++..++|+++..+|...+..+.++ .+.|+
T Consensus 397 ~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g-~~~Iv 475 (780)
T 1gm5_A 397 DVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNG-QIDVV 475 (780)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSS-CCCEE
T ss_pred CCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcC-CCCEE
Confidence 4578998776655555555688999999998765544444 444489999999999999999999999886 46777
Q ss_pred EEeccccccccCCCCCCEEEEcCC
Q 044798 818 ILTTKVGGLGTNLTGANRVIIFDP 841 (1231)
Q Consensus 818 LlSTkvGg~GLNLt~AnrVIi~Dp 841 (1231)
+.|.......+++.....||+=+.
T Consensus 476 VgT~~ll~~~~~~~~l~lVVIDEa 499 (780)
T 1gm5_A 476 IGTHALIQEDVHFKNLGLVIIDEQ 499 (780)
T ss_dssp EECTTHHHHCCCCSCCCEEEEESC
T ss_pred EECHHHHhhhhhccCCceEEeccc
Confidence 766655566677888877776443
No 135
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=79.93 E-value=2.2 Score=46.53 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=19.8
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHH
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGA 443 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~ 443 (1231)
...+.+|.-+.|+|||..+-++...
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4567889999999999887766544
No 136
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=78.42 E-value=8.2 Score=39.61 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=19.0
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHh
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~ 445 (1231)
..+|.-+.|+|||..+-+++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 468899999999988777766554
No 137
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.00 E-value=5.6 Score=47.37 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=30.0
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHH
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQW 465 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW 465 (1231)
..+|.+|.-..|+|||+.|-|+...+. .+++.|....++..|
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~-----~~fi~vs~s~L~sk~ 283 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTD-----ATFIRVIGSELVQKY 283 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHT-----CEEEEEEGGGGCCCS
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccC-----CCeEEEEhHHhhccc
Confidence 457889999999999999887776552 355666555555444
No 138
>2e5n_A RNA polymerase II elongation factor ELL2; ELL_N2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.16 E-value=2.3 Score=40.01 Aligned_cols=61 Identities=15% Similarity=0.228 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHhc-ccCCCCChHHHHHHHHhhhccccCCCCCceeeccCC
Q 044798 1165 PEILIRQICTFMQQRGGSSNSACIVEHFK-DRVPSKDLPLFKNLLKEIATLQKDPSGSRWVLKLNF 1229 (1231)
Q Consensus 1165 ~~~~~~~~~~~~~~~~~~~~t~~~~~~f~-~~~~~~~~~~f~~~l~~~~~~~~~~~~~~w~lk~~~ 1229 (1231)
...+-+.|...|+=++-.- .+|+.... .-++.+|...|.++|++||+++.. .+.|.||++|
T Consensus 11 ~rplReRvIHLLALkPykk--pEL~~RL~kdGl~~~d~~~l~~iL~eVa~~~~~--~~~y~Lk~~~ 72 (100)
T 2e5n_A 11 QRPYRDRVIHLLALKAYKK--PELLARLQKDGVNQKDKNSLGAILQQVANLNSK--DLSYTLKDYV 72 (100)
T ss_dssp TSCHHHHHHHHHHHSCBCH--HHHHHHHHHHCCCHHHHHHHHHHHHHHEEEETT--TTEEEECSTH
T ss_pred cCcHHHHHHHHHHcCCCCc--HHHHHHHHHccCCHHHHHHHHHHHHHHHhcCCc--CCeeehhHHH
Confidence 3457788888888776433 46666665 447888999999999999999875 4699999875
No 139
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=74.91 E-value=11 Score=43.25 Aligned_cols=97 Identities=10% Similarity=0.068 Sum_probs=69.7
Q ss_pred CCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEE
Q 044798 741 NPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIA---SGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIF 817 (1231)
Q Consensus 741 ~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~---~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~Vf 817 (1231)
.+..+||..+.+-.+......+.++||.+.++..+.-+...+.. .|+++..++|+++..+|...+..+..+ .+.|+
T Consensus 43 apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~-~~~Ii 121 (414)
T 3oiy_A 43 APTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-DYHIL 121 (414)
T ss_dssp SCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHT-CCSEE
T ss_pred eCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcC-CCCEE
Confidence 45678998755444444445678999999999988888877777 588999999999999988888888776 35777
Q ss_pred EEecccccc---ccCCCCCCEEEE
Q 044798 818 ILTTKVGGL---GTNLTGANRVII 838 (1231)
Q Consensus 818 LlSTkvGg~---GLNLt~AnrVIi 838 (1231)
+.|....-. -+++...+.||+
T Consensus 122 v~Tp~~l~~~l~~~~~~~~~~iVi 145 (414)
T 3oiy_A 122 VFSTQFVSKNREKLSQKRFDFVFV 145 (414)
T ss_dssp EEEHHHHHHCHHHHTTCCCSEEEE
T ss_pred EECHHHHHHHHHHhccccccEEEE
Confidence 777654421 134445555544
No 140
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=74.24 E-value=3.6 Score=46.30 Aligned_cols=27 Identities=22% Similarity=0.235 Sum_probs=21.0
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHHh
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L~ 445 (1231)
.....+|.-+.|+|||..+-+++..+.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678899999999998877776653
No 141
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=73.95 E-value=3.7 Score=48.47 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=24.9
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLR 463 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~ 463 (1231)
..|.+|.-+.|+|||..+-++...+ ...+++.|....++.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~----~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA----NNSTFFSISSSDLVS 206 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC----CSSEEEEECCC----
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc----CCCCEEEEeHHHHHh
Confidence 3577899999999999887766554 123455554444443
No 142
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=73.66 E-value=6 Score=43.82 Aligned_cols=24 Identities=21% Similarity=0.029 Sum_probs=19.9
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
.|.+|.-+.|+|||..+-++...+
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 567888999999999887777665
No 143
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=72.09 E-value=12 Score=44.93 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=42.5
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC-cchHHHHHHHHHHcCCCeEEEEe
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV-TLLRQWKREAEKWYPSFHVELLH 482 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~-sLl~QW~~E~~kw~p~lrV~il~ 482 (1231)
...|.--+|+|||+.+.+++.. ..+|+|||||. ....+|..++..|+|.. |..+.
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~-----~~~p~lvv~~~~~~A~~l~~~l~~~~~~~-v~~fp 71 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAER-----HAGPVVLIAPDMQNALRLHDEISQFTDQM-VMNLA 71 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHH-----SSSCEEEEESSHHHHHHHHHHHHHTCSSC-EEECC
T ss_pred eEEEeCCCchHHHHHHHHHHHH-----hCCCEEEEeCCHHHHHHHHHHHHhhCCCc-EEEEe
Confidence 3466777999999987666543 24699999995 77889999999998865 55554
No 144
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=70.92 E-value=12 Score=40.31 Aligned_cols=25 Identities=20% Similarity=0.053 Sum_probs=19.2
Q ss_pred cCCCcEEEEeCCCchHHHHHHHHHH
Q 044798 418 CQRAGGIIGDEMGLGKTIQVLSFLG 442 (1231)
Q Consensus 418 ~~~~GgILADEMGLGKTIqaIA~L~ 442 (1231)
......+|.-+.|+|||..+-++..
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~ 51 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHY 51 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHH
Confidence 4567788999999999987655443
No 145
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=70.58 E-value=7.6 Score=47.64 Aligned_cols=75 Identities=19% Similarity=0.240 Sum_probs=44.2
Q ss_pred cccChhhhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcC------------CCCcEEEEeCC
Q 044798 392 LKIPESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN------------MYKPSIVVCPV 459 (1231)
Q Consensus 392 ~~iP~~i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~------------~~kpvLIV~P~ 459 (1231)
.++++.....++- |...+..+......+...+|.-+.|+|||..+-++...+.... ...|.+.+||.
T Consensus 33 ~~~rp~~l~~i~G-~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~ 111 (604)
T 3k1j_A 33 IEVPEKLIDQVIG-QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPA 111 (604)
T ss_dssp SCCCSSHHHHCCS-CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEET
T ss_pred ccccccccceEEC-chhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEec
Confidence 3445555555543 3334444444445667889999999999988766655442211 22567778886
Q ss_pred cchHHHHH
Q 044798 460 TLLRQWKR 467 (1231)
Q Consensus 460 sLl~QW~~ 467 (1231)
....+...
T Consensus 112 g~~~~~~e 119 (604)
T 3k1j_A 112 CQGRRIVE 119 (604)
T ss_dssp THHHHHHH
T ss_pred chHHHHHH
Confidence 65554433
No 146
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.39 E-value=8.6 Score=42.11 Aligned_cols=24 Identities=33% Similarity=0.329 Sum_probs=19.6
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHh
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~ 445 (1231)
..+|.-+.|+|||..+-++...+.
T Consensus 44 ~~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 378899999999988877776653
No 147
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=69.78 E-value=30 Score=38.80 Aligned_cols=24 Identities=17% Similarity=0.220 Sum_probs=19.2
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHh
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~ 445 (1231)
..+|.-+.|+|||..+-+++..+.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 577899999999988877666553
No 148
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=68.86 E-value=7.3 Score=48.86 Aligned_cols=83 Identities=14% Similarity=0.117 Sum_probs=56.4
Q ss_pred hhhhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcC--CCCcEEEEeCCcch-HHHHHHHHHH
Q 044798 396 ESIFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN--MYKPSIVVCPVTLL-RQWKREAEKW 472 (1231)
Q Consensus 396 ~~i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~--~~kpvLIV~P~sLl-~QW~~E~~kw 472 (1231)
..+...|-|.|+++|.. ..+..++-...|+|||.+.+.-++.+.... ....+|+|+.+.-. ..-.+.+...
T Consensus 6 ~~~l~~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 6 EQLLAHLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp HHHHTTSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhHHhhCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 34566799999999963 245567778899999999888888877643 34679999996433 3344444444
Q ss_pred c----CCCeEEEEecc
Q 044798 473 Y----PSFHVELLHDS 484 (1231)
Q Consensus 473 ~----p~lrV~il~gs 484 (1231)
. ..+.|..+|+-
T Consensus 80 l~~~~~~~~v~Tfhs~ 95 (724)
T 1pjr_A 80 LGGAAEDVWISTFHSM 95 (724)
T ss_dssp HGGGGTTSEEEEHHHH
T ss_pred hcccccCcEEeeHHHH
Confidence 3 23566666654
No 149
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.55 E-value=9 Score=45.23 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=30.6
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWK 466 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~ 466 (1231)
..|.+|.-..|+|||+.|-|++..+. .+++.|....++..|.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~-----~~fi~v~~s~l~sk~v 257 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTS-----ATFLRIVGSELIQKYL 257 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHT-----CEEEEEESGGGCCSSS
T ss_pred CCCCceECCCCchHHHHHHHHHHHhC-----CCEEEEEHHHhhhccC
Confidence 46889999999999999887776552 3566666666555553
No 150
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.08 E-value=6.6 Score=43.82 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=20.1
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHh
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~ 445 (1231)
.+.+|.-+.|+|||..+-++...+.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578899999999988877776653
No 151
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=67.77 E-value=8.2 Score=47.80 Aligned_cols=79 Identities=15% Similarity=0.105 Sum_probs=55.1
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhc-C-CCCcEEEEeCCcc-hHHHHHHHHHHcC---
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFS-N-MYKPSIVVCPVTL-LRQWKREAEKWYP--- 474 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s-~-~~kpvLIV~P~sL-l~QW~~E~~kw~p--- 474 (1231)
.|-|.|+++|.. ..+..++-...|+|||.+.+.-+..+... + ....+|+|+.+.- .......+....+
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~ 75 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKE 75 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTT
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCccc
Confidence 477899999963 24456777889999999988877777654 2 4467999998644 4455556766653
Q ss_pred --CCeEEEEeccc
Q 044798 475 --SFHVELLHDSA 485 (1231)
Q Consensus 475 --~lrV~il~gs~ 485 (1231)
...|..+|+-.
T Consensus 76 ~~~~~v~Tfhs~~ 88 (673)
T 1uaa_A 76 ARGLMISTFHTLG 88 (673)
T ss_dssp TTTSEEEEHHHHH
T ss_pred ccCCEEEeHHHHH
Confidence 35666666543
No 152
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=67.31 E-value=13 Score=42.28 Aligned_cols=24 Identities=21% Similarity=0.163 Sum_probs=19.4
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGA 443 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~ 443 (1231)
..+.+|.-+.|+|||..+-++...
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 457789999999999887766544
No 153
>2doa_A RNA polymerase II elongation factor ELL; C19ORF17, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.5.81
Probab=67.22 E-value=3.3 Score=39.25 Aligned_cols=60 Identities=13% Similarity=0.211 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHhc-ccCCCCChHHHHHHHHhhhccccCCCCCceeeccCC
Q 044798 1166 EILIRQICTFMQQRGGSSNSACIVEHFK-DRVPSKDLPLFKNLLKEIATLQKDPSGSRWVLKLNF 1229 (1231)
Q Consensus 1166 ~~~~~~~~~~~~~~~~~~~t~~~~~~f~-~~~~~~~~~~f~~~l~~~~~~~~~~~~~~w~lk~~~ 1229 (1231)
..|-+.|...|+=++- +-.+|+.... .-++.+|...|.++|++||+|+.. .+.|.||++|
T Consensus 11 rplReRvIHLLALkpy--kk~EL~~RL~kdGl~~~d~~~l~~iL~eVA~~~~~--~~~y~Lk~~~ 71 (104)
T 2doa_A 11 RPFRDRVLHLLALRPY--RKAELLLRLQKDGLTQADKDALDGLLQQVANMSAK--DGTCTLQDCM 71 (104)
T ss_dssp SCHHHHHHHHHHHSCE--EHHHHHHHHHHHCCCHHHHHHHHHHHHHSSEECSS--SCEEECCSSG
T ss_pred CcHHHHHHHHHHcCCC--CcHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--CCeeeehHHH
Confidence 4577888888886663 2346666665 447888999999999999999875 4699999875
No 154
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=66.01 E-value=12 Score=41.92 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=19.6
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHh
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~ 445 (1231)
..+|.-+.|+|||..+-++...+.
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999998887776664
No 155
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=65.82 E-value=87 Score=35.27 Aligned_cols=44 Identities=11% Similarity=-0.142 Sum_probs=29.4
Q ss_pred hHHHHHHHH-HHHHHHc--CCCcEEEEeCCCchHHHHHHHHHHHHhh
Q 044798 403 FDYQKVGVQ-WLWELHC--QRAGGIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 403 ~pyQkegV~-wL~el~~--~~~GgILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
|.-|...+. ++..... .+.+.+|.-.+|+|||.++-.++..+..
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~ 71 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELIT 71 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 555666664 3333332 2334578899999999998888877754
No 156
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=65.82 E-value=7.9 Score=42.89 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=20.2
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
.+.+.+|.-+.|+|||..+-++...+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35677899999999998877666543
No 157
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.65 E-value=5.7 Score=47.01 Aligned_cols=41 Identities=15% Similarity=0.198 Sum_probs=29.3
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQW 465 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW 465 (1231)
.+|.+|.-..|+|||+.|-|++..+. .+++.|....++..|
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e~~-----~~~~~v~~s~l~sk~ 255 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAATIG-----ANFIFSPASGIVDKY 255 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT-----CEEEEEEGGGTCCSS
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhC-----CCEEEEehhhhcccc
Confidence 47889999999999999888776652 355555555555444
No 158
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=65.32 E-value=63 Score=33.96 Aligned_cols=63 Identities=22% Similarity=0.152 Sum_probs=39.3
Q ss_pred HHHHHHhhhhcCCccEEEEeCCcccC----CcchHHHHHHHhcccccEEEecccCccCChHHHHHhhhhh
Q 044798 545 QLRLLGEKLLDVEWGYAVLDEGHRIR----NPNAEISLVCKQLQTVHRIIMTGAPIQNKLSELWSLFDFV 610 (1231)
Q Consensus 545 ~Lr~~~~~L~~~~wd~VILDEAH~IK----N~~Sk~skalk~L~t~~RllLTGTPiqNnl~EL~SLl~FL 610 (1231)
.+......+....+|+|||||.-..- =+-..+...+..-....-++|||- +-+.+|..+.|++
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr---~ap~~l~e~AD~V 174 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGR---GCHRDILDLADTV 174 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECS---SCCHHHHHHCSEE
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECC---CCcHHHHHhCcce
Confidence 33344455667789999999984321 122344555554455566999995 4566777777665
No 159
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=63.99 E-value=16 Score=40.69 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=24.3
Q ss_pred cCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q 044798 418 CQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVC 457 (1231)
Q Consensus 418 ~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~ 457 (1231)
......+|.-++|+|||..+-++..... ....|++.|-
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~--~~~~~~v~v~ 60 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSA--RSDRPLVTLN 60 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSS--CSSSCCCEEE
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCc--ccCCCeEEEe
Confidence 3456788999999999987665543321 2234555553
No 160
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=60.57 E-value=29 Score=41.10 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=23.9
Q ss_pred EEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC
Q 044798 424 IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP 458 (1231)
Q Consensus 424 ILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P 458 (1231)
+++-..|.|||.++..++.++... ..++++|+-
T Consensus 104 livG~~G~GKTTt~~kLA~~l~~~--G~kVllv~~ 136 (443)
T 3dm5_A 104 LMVGIQGSGKTTTVAKLARYFQKR--GYKVGVVCS 136 (443)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEEC
T ss_pred EEECcCCCCHHHHHHHHHHHHHHC--CCeEEEEeC
Confidence 456679999999988888777543 356666663
No 161
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=59.94 E-value=15 Score=39.56 Aligned_cols=23 Identities=13% Similarity=0.055 Sum_probs=18.7
Q ss_pred CcEEEEeCCCchHHHHHHHHHHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGA 443 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~ 443 (1231)
.+.+|.-+.|+|||..+-++...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 46788899999999988776655
No 162
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=59.83 E-value=40 Score=40.20 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=19.0
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGA 443 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~ 443 (1231)
..|.+|.-++|+|||..+-++...
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999887666543
No 163
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=58.76 E-value=22 Score=45.49 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=21.1
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhh
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
..+.+|.-+.|+|||..+-++...+..
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 446788999999999888777766543
No 164
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=58.25 E-value=14 Score=41.30 Aligned_cols=27 Identities=33% Similarity=0.212 Sum_probs=20.8
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhh
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHF 446 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~ 446 (1231)
+...+|.-+.|+|||..+-+++..+..
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 446788999999999887777666543
No 165
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=58.22 E-value=35 Score=40.03 Aligned_cols=50 Identities=14% Similarity=-0.033 Sum_probs=35.5
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAE 470 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~ 470 (1231)
+.=.+|+...|+|||.-++.++...... ...+++++..-.-..++...+.
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE~~~~~l~~R~~ 249 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLEMPAAQLTLRMM 249 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESSSCHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECCCCHHHHHHHHH
Confidence 3446899999999998888777665432 2468999988655556655443
No 166
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=58.16 E-value=33 Score=38.27 Aligned_cols=37 Identities=14% Similarity=-0.093 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHcCCC--cEEEEeCCCchHHHHHHHHHH
Q 044798 406 QKVGVQWLWELHCQRA--GGIIGDEMGLGKTIQVLSFLG 442 (1231)
Q Consensus 406 QkegV~wL~el~~~~~--GgILADEMGLGKTIqaIA~L~ 442 (1231)
|.+.+..+......+. .-++.-+.|.|||-.+.+++.
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4555665555444433 467899999999988877665
No 167
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=57.90 E-value=34 Score=45.37 Aligned_cols=96 Identities=13% Similarity=0.082 Sum_probs=71.6
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEE
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIA----SGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIF 817 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~----~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~Vf 817 (1231)
+..+||..+.+..+-.....|.++||.+.++..+.-+...+.. .++.+..++|..+..++...+.....+ .+.|+
T Consensus 632 ~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g-~~dIv 710 (1151)
T 2eyq_A 632 DVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG-KIDIL 710 (1151)
T ss_dssp CCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTT-CCSEE
T ss_pred CCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcC-CCCEE
Confidence 4568998776655444456688999999998776655555543 368899999999999999999998876 56787
Q ss_pred EEeccccccccCCCCCCEEEE
Q 044798 818 ILTTKVGGLGTNLTGANRVII 838 (1231)
Q Consensus 818 LlSTkvGg~GLNLt~AnrVIi 838 (1231)
+.|.......+++.....||+
T Consensus 711 V~T~~ll~~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 711 IGTHKLLQSDVKFKDLGLLIV 731 (1151)
T ss_dssp EECTHHHHSCCCCSSEEEEEE
T ss_pred EECHHHHhCCccccccceEEE
Confidence 777676666677777766655
No 168
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=57.78 E-value=24 Score=46.61 Aligned_cols=96 Identities=10% Similarity=0.075 Sum_probs=72.9
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEE
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIA---SGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFI 818 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~---~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfL 818 (1231)
+..|||..+.+-.+......+.++||.+..+..+.-+...|.. .|+.+..++|.++..+|...+..+..+ .+.|++
T Consensus 101 pTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g-~~~IlV 179 (1104)
T 4ddu_A 101 PTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-DYHILV 179 (1104)
T ss_dssp STTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTS-CCSEEE
T ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCC-CCCEEE
Confidence 4578998866665555556788999999999998888888877 578999999999998888888999876 457777
Q ss_pred Eeccccccc---cCCCCCCEEEE
Q 044798 819 LTTKVGGLG---TNLTGANRVII 838 (1231)
Q Consensus 819 lSTkvGg~G---LNLt~AnrVIi 838 (1231)
.|+...-.- +++.....||+
T Consensus 180 ~Tp~rL~~~l~~l~~~~l~~lVi 202 (1104)
T 4ddu_A 180 FSTQFVSKNREKLSQKRFDFVFV 202 (1104)
T ss_dssp EEHHHHHHSHHHHHTSCCSEEEE
T ss_pred ECHHHHHHHHHhhcccCcCEEEE
Confidence 776544211 44566676666
No 169
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=57.75 E-value=18 Score=37.01 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=25.0
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVC 457 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~ 457 (1231)
.+.+|.-+.|+|||..+.++...+... ..++++|.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~--~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR--NVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT--TCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEE
Confidence 567889999999999887777666433 24555443
No 170
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=57.46 E-value=27 Score=39.11 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=19.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHh
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~ 445 (1231)
.+|.-+.|+|||..+-++...+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 78899999999998888777664
No 171
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=56.25 E-value=7.6 Score=42.47 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=19.8
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHh
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~ 445 (1231)
..+|.-+.|+|||..+-++...+.
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHhc
Confidence 478899999999998887776653
No 172
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=56.20 E-value=14 Score=44.26 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=19.1
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHH
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLG 442 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~ 442 (1231)
...+.+|.-+.|+|||..+-++..
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~ 260 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVAN 260 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHH
Confidence 346788999999999998766644
No 173
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.89 E-value=8.3 Score=45.48 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=28.8
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHH
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQW 465 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW 465 (1231)
..+|.+|.-..|+|||..|-|++..+. .+++.|....++..|
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~-----~~~~~v~~~~l~~~~ 246 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTK-----AAFIRVNGSEFVHKY 246 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHT-----CEEEEEEGGGTCCSS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC-----CCeEEEecchhhccc
Confidence 356888999999999999887776552 355555544444433
No 174
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=54.68 E-value=43 Score=41.88 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=21.3
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHHh
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L~ 445 (1231)
...+.+|.-+.|+|||..+-++...+.
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 345678999999999988877766554
No 175
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=53.64 E-value=64 Score=37.96 Aligned_cols=32 Identities=16% Similarity=-0.036 Sum_probs=22.5
Q ss_pred EEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q 044798 424 IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVC 457 (1231)
Q Consensus 424 ILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~ 457 (1231)
+++-..|.|||..+..++..+... .+++++|+
T Consensus 101 ~lvG~~GsGKTTt~~kLA~~l~~~--G~kVllv~ 132 (433)
T 3kl4_A 101 MLVGVQGSGKTTTAGKLAYFYKKR--GYKVGLVA 132 (433)
T ss_dssp EECCCTTSCHHHHHHHHHHHHHHT--TCCEEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHc--CCeEEEEe
Confidence 456778999998888777766543 35565555
No 176
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=53.17 E-value=36 Score=39.96 Aligned_cols=50 Identities=12% Similarity=0.018 Sum_probs=34.6
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHH
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREA 469 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~ 469 (1231)
.+.-.+|+...|+|||.-++.++..+... ...+++++..-.-..++...+
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~s~~~l~~r~ 251 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEMSAQQLVMRM 251 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSSCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCCCHHHHHHHH
Confidence 34456899999999998888777666432 135899998755445554443
No 177
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=52.64 E-value=9.8 Score=48.38 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=27.0
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQW 465 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW 465 (1231)
..|.+|.-..|+|||+.|-++...+ ..+++.|....++..|
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~-----~~~f~~v~~~~l~s~~ 551 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPELLTMW 551 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTT-----TCEEEECCHHHHHTTT
T ss_pred CceEEEecCCCCCchHHHHHHHHHh-----CCceEEeccchhhccc
Confidence 4688999999999998876665433 2344444444554444
No 178
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=52.59 E-value=28 Score=41.13 Aligned_cols=23 Identities=22% Similarity=0.066 Sum_probs=18.0
Q ss_pred CcEEEEeCCCchHHHHHHHHHHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGA 443 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~ 443 (1231)
...||.-+.|+|||..+-++...
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~ 73 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARY 73 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHH
Confidence 36789999999999877655544
No 179
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=52.45 E-value=9.7 Score=41.59 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=19.1
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGA 443 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~ 443 (1231)
..+.+|.-+.|+|||..+-++...
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHH
Confidence 467788999999999887766543
No 180
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=50.82 E-value=27 Score=35.05 Aligned_cols=64 Identities=16% Similarity=0.021 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHc-----CCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHH
Q 044798 404 DYQKVGVQWLWELHC-----QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKRE 468 (1231)
Q Consensus 404 pyQkegV~wL~el~~-----~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E 468 (1231)
+.|..++..+..... .+.+.+|.-+.|+|||..+-+++..+.... ...++++....++..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~-g~~~~~~~~~~~~~~~~~~ 85 (180)
T 3ec2_A 17 VSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK-GIRGYFFDTKDLIFRLKHL 85 (180)
T ss_dssp HHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS-CCCCCEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc-CCeEEEEEHHHHHHHHHHH
Confidence 578888887765442 345677888999999988877776664221 1244444444444444433
No 181
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=48.90 E-value=76 Score=38.16 Aligned_cols=77 Identities=13% Similarity=0.110 Sum_probs=51.2
Q ss_pred HhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCC-CCHHHHHHHHHHHhCCCCceEEEEec--cccccccCCC---C
Q 044798 759 KDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGL-TPVKQRMALIDEYNNSSDVFIFILTT--KVGGLGTNLT---G 832 (1231)
Q Consensus 759 ~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGs-ts~~eRq~iId~Fn~d~~i~VfLlST--kvGg~GLNLt---~ 832 (1231)
...+..+|||..+..+++.+... .++++. +.|. ++ +..+++.|..+.+ .| |+++ ....+|||++ +
T Consensus 390 ~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~-~q~~~~~---~~~~~~~~~~~~~-~v-l~~v~gg~~~EGiD~~d~~g 460 (551)
T 3crv_A 390 FQAKANVLVVFPSYEIMDRVMSR---ISLPKY-VESEDSS---VEDLYSAISANNK-VL-IGSVGKGKLAEGIELRNNDR 460 (551)
T ss_dssp HHCSSEEEEEESCHHHHHHHHTT---CCSSEE-ECCSSCC---HHHHHHHTTSSSS-CE-EEEESSCCSCCSSCCEETTE
T ss_pred HhCCCCEEEEecCHHHHHHHHHh---cCCcEE-EcCCCCC---HHHHHHHHHhcCC-eE-EEEEecceecccccccccCC
Confidence 44456889888888888777752 344433 3443 34 4568888864333 34 4554 6889999999 3
Q ss_pred --CCEEEEcCCCCC
Q 044798 833 --ANRVIIFDPDWN 844 (1231)
Q Consensus 833 --AnrVIi~Dp~WN 844 (1231)
+..||+.-.|+-
T Consensus 461 ~~l~~viI~~lPfp 474 (551)
T 3crv_A 461 SLISDVVIVGIPYP 474 (551)
T ss_dssp ESEEEEEEESCCCC
T ss_pred cceeEEEEEcCCCC
Confidence 788888877763
No 182
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=48.54 E-value=79 Score=31.70 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHc
Q 044798 745 SEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIAS 785 (1231)
Q Consensus 745 S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~ 785 (1231)
......+..|+.+....|.||+|+|.....++.|-..|...
T Consensus 22 ~~~~~~aCrL~~ka~~~G~rv~V~~~d~~~a~~LD~~LW~~ 62 (150)
T 3sxu_A 22 SAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWAR 62 (150)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHhCC
Confidence 45788899999999999999999999999999999999764
No 183
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=48.43 E-value=74 Score=35.28 Aligned_cols=50 Identities=12% Similarity=0.245 Sum_probs=29.3
Q ss_pred CCccEEEEeCCcccCCcch--HHHHHHHhcccccEEEecccCccCChHHHHHh
Q 044798 556 VEWGYAVLDEGHRIRNPNA--EISLVCKQLQTVHRIIMTGAPIQNKLSELWSL 606 (1231)
Q Consensus 556 ~~wd~VILDEAH~IKN~~S--k~skalk~L~t~~RllLTGTPiqNnl~EL~SL 606 (1231)
.++.++||||+|.+ ++.+ ...+.+.......+++++.+-...-+..+.+-
T Consensus 133 ~~~~vlilDE~~~L-~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR 184 (354)
T 1sxj_E 133 HRYKCVIINEANSL-TKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQ 184 (354)
T ss_dssp -CCEEEEEECTTSS-CHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTT
T ss_pred CCCeEEEEeCcccc-CHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhh
Confidence 36789999999995 3332 23344444445567777766554444444443
No 184
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=47.77 E-value=79 Score=35.00 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=21.6
Q ss_pred EEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC
Q 044798 424 IIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP 458 (1231)
Q Consensus 424 ILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P 458 (1231)
++.-..|.|||..+..+...+.... ..++++|.-
T Consensus 109 ~lvG~~GsGKTTl~~~LA~~l~~~~-G~~V~lv~~ 142 (296)
T 2px0_A 109 VLFGSTGAGKTTTLAKLAAISMLEK-HKKIAFITT 142 (296)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTT-CCCEEEEEC
T ss_pred EEECCCCCCHHHHHHHHHHHHHHhc-CCEEEEEec
Confidence 3455689999988776666554322 246666654
No 185
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=47.51 E-value=66 Score=38.38 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=19.8
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
.+.+|.-+.|+|||..+-++...+
T Consensus 78 ~~lLL~GppGtGKTtla~~la~~l 101 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVAQEL 101 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 567889999999999887776654
No 186
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=46.32 E-value=72 Score=36.19 Aligned_cols=91 Identities=12% Similarity=0.125 Sum_probs=62.9
Q ss_pred CCcchHHHHHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHHHHc-CC---cEEEEeCCCCHHHHHHHHHHHhCCCCceE
Q 044798 742 PERSEKMKVVAQVLKVWK-DQGHRVLLFAQTQQMLDILESFLIAS-GY---EYRRMDGLTPVKQRMALIDEYNNSSDVFI 816 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~-~~g~KVLVFSQ~~~~LdiLe~~L~~~-Gi---~~~rIdGsts~~eRq~iId~Fn~d~~i~V 816 (1231)
+..+||......++.... ..+.++||.+..+..+.-....+... |+ .+..++|.....++..... ...|
T Consensus 31 ~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~------~~~i 104 (494)
T 1wp9_A 31 PTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA------RAKV 104 (494)
T ss_dssp CTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH------HCSE
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc------CCCE
Confidence 456888877666655443 46789999999988877666666554 66 8999999998877655432 2367
Q ss_pred EEEecccccc-----ccCCCCCCEEEE
Q 044798 817 FILTTKVGGL-----GTNLTGANRVII 838 (1231)
Q Consensus 817 fLlSTkvGg~-----GLNLt~AnrVIi 838 (1231)
+++|...... .+++...+.||+
T Consensus 105 vv~T~~~l~~~~~~~~~~~~~~~~vIi 131 (494)
T 1wp9_A 105 IVATPQTIENDLLAGRISLEDVSLIVF 131 (494)
T ss_dssp EEECHHHHHHHHHTTSCCTTSCSEEEE
T ss_pred EEecHHHHHHHHhcCCcchhhceEEEE
Confidence 7777655432 355666776666
No 187
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=43.73 E-value=1.6e+02 Score=31.67 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=32.7
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHHhhcC---------CCCcEEEEeCCcchHHHHHHHHH
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGALHFSN---------MYKPSIVVCPVTLLRQWKREAEK 471 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L~~s~---------~~kpvLIV~P~sLl~QW~~E~~k 471 (1231)
.+.-.+|.-..|+|||.-+..++..+. .+ ..++++++.-.....+....+..
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~~-~g~~~~g~~~~~~~~v~~~~~e~~~~~~~~r~~~ 89 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQIA-GGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHA 89 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHH-TCCCTTCCCCCCCCCEEEEESSSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHh-cCCCcCCCccCCCccEEEEECCCCHHHHHHHHHH
Confidence 344567888999999998877776543 22 13577777765444444333333
No 188
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=43.24 E-value=61 Score=36.59 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=18.1
Q ss_pred cEEE--EeCCCchHHHHHHHHHHHHh
Q 044798 422 GGII--GDEMGLGKTIQVLSFLGALH 445 (1231)
Q Consensus 422 GgIL--ADEMGLGKTIqaIA~L~~L~ 445 (1231)
..+| .-+.|+|||..+-.++..+.
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 3456 68999999988777766553
No 189
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=41.75 E-value=73 Score=35.79 Aligned_cols=32 Identities=13% Similarity=0.047 Sum_probs=21.9
Q ss_pred EEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC
Q 044798 425 IGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP 458 (1231)
Q Consensus 425 LADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P 458 (1231)
+.-..|.|||..+..+...+... .+.++++.-
T Consensus 110 ivG~~G~GKTT~~~~LA~~l~~~--g~kVllid~ 141 (320)
T 1zu4_A 110 LVGVNGTGKTTSLAKMANYYAEL--GYKVLIAAA 141 (320)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHHHHC--CCeEEEEeC
Confidence 34469999998877766665543 467777754
No 190
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=41.66 E-value=1.5e+02 Score=31.02 Aligned_cols=92 Identities=17% Similarity=0.155 Sum_probs=57.7
Q ss_pred CCcchHHHH-HHHHHHHHH-------hcCCeEEEEeccHHHHHHH----HHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh
Q 044798 742 PERSEKMKV-VAQVLKVWK-------DQGHRVLLFAQTQQMLDIL----ESFLIASGYEYRRMDGLTPVKQRMALIDEYN 809 (1231)
Q Consensus 742 ~~~S~Kl~~-L~eLLk~~~-------~~g~KVLVFSQ~~~~LdiL----e~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn 809 (1231)
+..|||..+ +.-++..+. ..+.++||.+.++....-+ ..++...++.+..+.|..+.......+.
T Consensus 74 pTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--- 150 (242)
T 3fe2_A 74 QTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE--- 150 (242)
T ss_dssp CTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---
T ss_pred CCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---
Confidence 356888755 444555443 2366899999988765554 4444556899999999998776554443
Q ss_pred CCCCceEEEEecccc-----ccccCCCCCCEEEE
Q 044798 810 NSSDVFIFILTTKVG-----GLGTNLTGANRVII 838 (1231)
Q Consensus 810 ~d~~i~VfLlSTkvG-----g~GLNLt~AnrVIi 838 (1231)
.+ +.|++.|.... ...+++.....||+
T Consensus 151 ~~--~~I~v~Tp~~l~~~l~~~~~~~~~~~~lVi 182 (242)
T 3fe2_A 151 RG--VEICIATPGRLIDFLECGKTNLRRTTYLVL 182 (242)
T ss_dssp HC--CSEEEECHHHHHHHHHHTSCCCTTCCEEEE
T ss_pred CC--CCEEEECHHHHHHHHHcCCCCcccccEEEE
Confidence 23 46766665332 12346666766665
No 191
>3ipz_A Monothiol glutaredoxin-S14, chloroplastic; electron transport, PL redox-active center, transit peptide, transport, oxidoreduc; 2.40A {Arabidopsis thaliana} PDB: 2lku_A
Probab=41.40 E-value=76 Score=29.50 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=40.9
Q ss_pred HHHHHHHhcCCeEEEEec------cHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh
Q 044798 753 QVLKVWKDQGHRVLLFAQ------TQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYN 809 (1231)
Q Consensus 753 eLLk~~~~~g~KVLVFSQ------~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn 809 (1231)
+.++.... .++|+||+. +-........+|...|+.|..++=......+..+.....
T Consensus 9 ~~v~~~i~-~~~Vvvy~k~t~~~p~Cp~C~~ak~~L~~~gi~~~~~dI~~~~~~~~~l~~~~g 70 (109)
T 3ipz_A 9 DTLEKLVN-SEKVVLFMKGTRDFPMCGFSNTVVQILKNLNVPFEDVNILENEMLRQGLKEYSN 70 (109)
T ss_dssp HHHHHHHT-SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHHT
T ss_pred HHHHHHHc-cCCEEEEEecCCCCCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHHC
Confidence 34444333 469999987 578899999999999999998887666666666555443
No 192
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=40.34 E-value=1.7e+02 Score=30.99 Aligned_cols=92 Identities=15% Similarity=0.109 Sum_probs=57.4
Q ss_pred CCcchHHHH-HHHHHHHHHhc--CCeEEEEeccHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCc
Q 044798 742 PERSEKMKV-VAQVLKVWKDQ--GHRVLLFAQTQQMLDILESFLIA----SGYEYRRMDGLTPVKQRMALIDEYNNSSDV 814 (1231)
Q Consensus 742 ~~~S~Kl~~-L~eLLk~~~~~--g~KVLVFSQ~~~~LdiLe~~L~~----~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i 814 (1231)
+..+||..+ +.-++..+... +.++||.+.++..+.-+...+.. .++.+..+.|+.+.......+ .. .+
T Consensus 88 ~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~--~~ 162 (249)
T 3ber_A 88 ETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL---AK--KP 162 (249)
T ss_dssp CTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH---HT--CC
T ss_pred CCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh---cC--CC
Confidence 456888765 44444444333 45799999998876666555544 489999999998765543332 22 34
Q ss_pred eEEEEecccc------ccccCCCCCCEEEE
Q 044798 815 FIFILTTKVG------GLGTNLTGANRVII 838 (1231)
Q Consensus 815 ~VfLlSTkvG------g~GLNLt~AnrVIi 838 (1231)
.|++.|.... ..++++...+.||+
T Consensus 163 ~I~v~Tp~~l~~~l~~~~~~~l~~~~~lVi 192 (249)
T 3ber_A 163 HIIIATPGRLIDHLENTKGFNLRALKYLVM 192 (249)
T ss_dssp SEEEECHHHHHHHHHHSTTCCCTTCCEEEE
T ss_pred CEEEECHHHHHHHHHcCCCcCccccCEEEE
Confidence 6766664432 23466777776665
No 193
>3zyw_A Glutaredoxin-3; metal binding protein; 1.84A {Homo sapiens}
Probab=39.63 E-value=87 Score=29.37 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=36.8
Q ss_pred CCeEEEEec------cHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Q 044798 762 GHRVLLFAQ------TQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEY 808 (1231)
Q Consensus 762 g~KVLVFSQ------~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~F 808 (1231)
.++|+||+. +-........+|...|+.|..++=......|..+....
T Consensus 15 ~~~Vvlf~kg~~~~~~Cp~C~~ak~~L~~~gi~y~~~di~~d~~~~~~l~~~~ 67 (111)
T 3zyw_A 15 AAPCMLFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQGLKAYS 67 (111)
T ss_dssp SSSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCEEEEGGGCHHHHHHHHHHH
T ss_pred cCCEEEEEecCCCCCcchhHHHHHHHHHHcCCCeEEEECcCCHHHHHHHHHHH
Confidence 469999984 66778889999999999999988777766666655443
No 194
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=39.63 E-value=59 Score=42.63 Aligned_cols=95 Identities=15% Similarity=0.133 Sum_probs=66.9
Q ss_pred CCCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHH----HcCC----cEEEEeCCCCHHHHHHHHHHHhCCC
Q 044798 741 NPERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLI----ASGY----EYRRMDGLTPVKQRMALIDEYNNSS 812 (1231)
Q Consensus 741 ~~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~----~~Gi----~~~rIdGsts~~eRq~iId~Fn~d~ 812 (1231)
.+..|||..+++-++..+...+.++||.+.++..+.-+...+. ..|+ .+..++|+++...+....+.+..
T Consensus 78 apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-- 155 (1054)
T 1gku_B 78 APTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-- 155 (1054)
T ss_dssp CCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--
T ss_pred cCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--
Confidence 3457899877677777666778899999999887665555554 3467 89999999998888777777776
Q ss_pred CceEEEEeccccccccC-CCCCCEEEE
Q 044798 813 DVFIFILTTKVGGLGTN-LTGANRVII 838 (1231)
Q Consensus 813 ~i~VfLlSTkvGg~GLN-Lt~AnrVIi 838 (1231)
+.|++.|....-.-+. |...+.||+
T Consensus 156 -~~IlV~TP~~L~~~l~~L~~l~~lVi 181 (1054)
T 1gku_B 156 -FKIVITTTQFLSKHYRELGHFDFIFV 181 (1054)
T ss_dssp -CSEEEEEHHHHHHCSTTSCCCSEEEE
T ss_pred -CCEEEEcHHHHHHHHHHhccCCEEEE
Confidence 4777777654433222 445555554
No 195
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=39.60 E-value=1.6e+02 Score=30.01 Aligned_cols=93 Identities=14% Similarity=0.069 Sum_probs=57.8
Q ss_pred CCcchHHHHHHH-HHHHHHh--cCCeEEEEeccHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhCCCC
Q 044798 742 PERSEKMKVVAQ-VLKVWKD--QGHRVLLFAQTQQMLDILESFLIAS-----GYEYRRMDGLTPVKQRMALIDEYNNSSD 813 (1231)
Q Consensus 742 ~~~S~Kl~~L~e-LLk~~~~--~g~KVLVFSQ~~~~LdiLe~~L~~~-----Gi~~~rIdGsts~~eRq~iId~Fn~d~~ 813 (1231)
+..+||..+..- ++..+.. .+.++||.+.++..+.-+...+... ++.+..+.|..+...+...+.. + .
T Consensus 59 ~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~---~-~ 134 (220)
T 1t6n_A 59 KSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---N-C 134 (220)
T ss_dssp CTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH---S-C
T ss_pred CCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc---C-C
Confidence 356888765433 3333322 2348999999988877776666554 7899999999987665544432 2 3
Q ss_pred ceEEEEecccc-----ccccCCCCCCEEEE
Q 044798 814 VFIFILTTKVG-----GLGTNLTGANRVII 838 (1231)
Q Consensus 814 i~VfLlSTkvG-----g~GLNLt~AnrVIi 838 (1231)
+.|++.|.... ...+++...+.||+
T Consensus 135 ~~i~v~T~~~l~~~~~~~~~~~~~~~~lVi 164 (220)
T 1t6n_A 135 PHIVVGTPGRILALARNKSLNLKHIKHFIL 164 (220)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CCEEEeCHHHHHHHHHhCCCCcccCCEEEE
Confidence 36666665432 22355666666665
No 196
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=38.68 E-value=1e+02 Score=32.02 Aligned_cols=91 Identities=19% Similarity=0.140 Sum_probs=59.2
Q ss_pred CCcchHHHH-HHHHHHHHH--hcCCeEEEEeccHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhCCCC
Q 044798 742 PERSEKMKV-VAQVLKVWK--DQGHRVLLFAQTQQMLDILESFLIAS-----GYEYRRMDGLTPVKQRMALIDEYNNSSD 813 (1231)
Q Consensus 742 ~~~S~Kl~~-L~eLLk~~~--~~g~KVLVFSQ~~~~LdiLe~~L~~~-----Gi~~~rIdGsts~~eRq~iId~Fn~d~~ 813 (1231)
+..+||..+ +.-++..+. ..+.++||.+.++..+.-+...+... ++.+..+.|+.+..++...+ + .
T Consensus 69 ~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~---~ 142 (230)
T 2oxc_A 69 KSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL---K---K 142 (230)
T ss_dssp CTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT---T---S
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc---c---C
Confidence 456889865 555555543 23569999999988877777766653 68889999998876654433 2 3
Q ss_pred ceEEEEecccc-----ccccCCCCCCEEEE
Q 044798 814 VFIFILTTKVG-----GLGTNLTGANRVII 838 (1231)
Q Consensus 814 i~VfLlSTkvG-----g~GLNLt~AnrVIi 838 (1231)
+.|++.|.... ...+++...+.||+
T Consensus 143 ~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 172 (230)
T 2oxc_A 143 CHIAVGSPGRIKQLIELDYLNPGSIRLFIL 172 (230)
T ss_dssp CSEEEECHHHHHHHHHTTSSCGGGCCEEEE
T ss_pred CCEEEECHHHHHHHHhcCCcccccCCEEEe
Confidence 46766665433 12345555665554
No 197
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=38.34 E-value=38 Score=45.11 Aligned_cols=58 Identities=14% Similarity=0.005 Sum_probs=43.0
Q ss_pred hhhhchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcC----CCCcEEEEeCCcc
Q 044798 398 IFNNLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSN----MYKPSIVVCPVTL 461 (1231)
Q Consensus 398 i~~~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~----~~kpvLIV~P~sL 461 (1231)
+...|-|-|..+|. ..+...++....|+|||.+.+.-+..+...+ ....+|||+++..
T Consensus 7 ~~~~~t~eQ~~~i~------~~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~ 68 (1232)
T 3u4q_A 7 ADSTWTDDQWNAIV------STGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNA 68 (1232)
T ss_dssp ---CCCHHHHHHHH------CCSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHH
T ss_pred CCCCCCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHH
Confidence 33468899999985 3456778889999999999887777776553 3357999999643
No 198
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=38.23 E-value=1.3e+02 Score=27.58 Aligned_cols=95 Identities=7% Similarity=-0.050 Sum_probs=57.3
Q ss_pred hcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhC---CCCceEEEEeccccccccCC--CCCC
Q 044798 760 DQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN---SSDVFIFILTTKVGGLGTNL--TGAN 834 (1231)
Q Consensus 760 ~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~---d~~i~VfLlSTkvGg~GLNL--t~An 834 (1231)
..+..+..+......+..+ ....+.++.+|-.++...-..++...+. .+.+.|++++...-..-... .+|+
T Consensus 25 ~~~~~v~~~~~~~~a~~~l----~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pii~~s~~~~~~~~~~~~~g~~ 100 (133)
T 3nhm_A 25 SGEFDCTTAADGASGLQQA----LAHPPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPD 100 (133)
T ss_dssp TTTSEEEEESSHHHHHHHH----HHSCCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCEEEEESCCC-----TTSCCCS
T ss_pred hCCcEEEEECCHHHHHHHH----hcCCCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCEEEEeCCCcHhHHHHhhcCCc
Confidence 3566777777666666554 3456888888877665455556666654 23567777775432211222 2344
Q ss_pred EEEEcCCCCCcchHHHHHHhHHhhCC
Q 044798 835 RVIIFDPDWNPSTDVQARERAWRIGQ 860 (1231)
Q Consensus 835 rVIi~Dp~WNPs~d~QAigRa~RiGQ 860 (1231)
.+| --|+++....+++.++.+-+.
T Consensus 101 ~~l--~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 101 AYL--VKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp EEE--ESSCCHHHHHHHHHHHHHHHC
T ss_pred eEE--eccCCHHHHHHHHHHHHhhhc
Confidence 433 357889999999888876543
No 199
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=37.13 E-value=47 Score=36.94 Aligned_cols=36 Identities=17% Similarity=0.284 Sum_probs=26.7
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHh-hcCCCCcEEEEe
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALH-FSNMYKPSIVVC 457 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~-~s~~~kpvLIV~ 457 (1231)
..+.+|.-++|+|||..+.++...+. ..+ .+++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g--~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKG--VSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSC--CCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcC--CcEEEEE
Confidence 46788999999999999888887766 443 4555443
No 200
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=36.90 E-value=2.2e+02 Score=30.84 Aligned_cols=24 Identities=13% Similarity=-0.021 Sum_probs=18.8
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
...+|.-+.|+|||..+-.++..+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~ 54 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINEL 54 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhc
Confidence 467788999999998777666554
No 201
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=36.31 E-value=47 Score=37.79 Aligned_cols=43 Identities=14% Similarity=-0.105 Sum_probs=31.2
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQW 465 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW 465 (1231)
.-.+|+-+.|+|||..++.++..+... .+++++|.-.....++
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~--g~~vlyi~~E~~~~~~ 104 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAA--GGIAAFIDAEHALDPE 104 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCCCcCHH
Confidence 346788999999999988887766543 3678888775544444
No 202
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=36.29 E-value=2.2e+02 Score=30.38 Aligned_cols=92 Identities=15% Similarity=0.122 Sum_probs=57.5
Q ss_pred CCcchHHHH-HHHHHHHHHh------cCCeEEEEeccHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhC
Q 044798 742 PERSEKMKV-VAQVLKVWKD------QGHRVLLFAQTQQMLDILESFLIA----SGYEYRRMDGLTPVKQRMALIDEYNN 810 (1231)
Q Consensus 742 ~~~S~Kl~~-L~eLLk~~~~------~g~KVLVFSQ~~~~LdiLe~~L~~----~Gi~~~rIdGsts~~eRq~iId~Fn~ 810 (1231)
+..|||..+ +.-++..+.. .+.++||.+.++..+.-+...+.. .++.+..+.|..........+ ..
T Consensus 99 ~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~ 175 (262)
T 3ly5_A 99 KTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKL---GN 175 (262)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHH---HH
T ss_pred cCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHh---cC
Confidence 456888765 4445544432 577899999998876666555554 477888999988765544333 33
Q ss_pred CCCceEEEEecccc------ccccCCCCCCEEEE
Q 044798 811 SSDVFIFILTTKVG------GLGTNLTGANRVII 838 (1231)
Q Consensus 811 d~~i~VfLlSTkvG------g~GLNLt~AnrVIi 838 (1231)
+ +.|++.|.... ..++++.....||+
T Consensus 176 ~--~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lVi 207 (262)
T 3ly5_A 176 G--INIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207 (262)
T ss_dssp C--CSEEEECHHHHHHHHHHCTTCCCTTCCEEEE
T ss_pred C--CCEEEEcHHHHHHHHHccCCcccccCCEEEE
Confidence 3 46666553211 23466777766665
No 203
>3gx8_A Monothiol glutaredoxin-5, mitochondrial; TRX fold, electron transport, mitochondrion, redox-active center, transit peptide, transport; 1.67A {Saccharomyces cerevisiae}
Probab=35.57 E-value=1.2e+02 Score=28.76 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=40.4
Q ss_pred CCeEEEEec------cHHHHHHHHHHHHHcCCc---EEEEeCCCCHHHHHHHHHHHhCCCCceEEE
Q 044798 762 GHRVLLFAQ------TQQMLDILESFLIASGYE---YRRMDGLTPVKQRMALIDEYNNSSDVFIFI 818 (1231)
Q Consensus 762 g~KVLVFSQ------~~~~LdiLe~~L~~~Gi~---~~rIdGsts~~eRq~iId~Fn~d~~i~VfL 818 (1231)
.++|+||+. +-........+|...|+. |..++=......|+.+........-..||+
T Consensus 15 ~~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~~~~dv~~~~~~~~~l~~~sg~~tvP~vfI 80 (121)
T 3gx8_A 15 SAPVVLFMKGTPEFPKCGFSRATIGLLGNQGVDPAKFAAYNVLEDPELREGIKEFSEWPTIPQLYV 80 (121)
T ss_dssp SCSEEEEESBCSSSBCTTHHHHHHHHHHHHTBCGGGEEEEECTTCHHHHHHHHHHHTCCSSCEEEE
T ss_pred cCCEEEEEeccCCCCCCccHHHHHHHHHHcCCCcceEEEEEecCCHHHHHHHHHHhCCCCCCeEEE
Confidence 469999988 467888899999999998 888887777666666555443332224444
No 204
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=34.92 E-value=1.7e+02 Score=30.17 Aligned_cols=91 Identities=18% Similarity=0.153 Sum_probs=54.5
Q ss_pred CCcchHHHHH-HHHHHHHH------hcCCeEEEEeccHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhC
Q 044798 742 PERSEKMKVV-AQVLKVWK------DQGHRVLLFAQTQQMLDILESFLIAS----GYEYRRMDGLTPVKQRMALIDEYNN 810 (1231)
Q Consensus 742 ~~~S~Kl~~L-~eLLk~~~------~~g~KVLVFSQ~~~~LdiLe~~L~~~----Gi~~~rIdGsts~~eRq~iId~Fn~ 810 (1231)
+..+||..+. .-++..+. ..+.++||.+.++....-+...+... ++.+..+.|..+.......+ +
T Consensus 70 ~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~- 145 (236)
T 2pl3_A 70 KTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI---N- 145 (236)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH---T-
T ss_pred CCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC---C-
Confidence 4568887653 33333332 34678999999988777666666554 57889999987654433322 2
Q ss_pred CCCceEEEEeccccc------cccCCCCCCEEEE
Q 044798 811 SSDVFIFILTTKVGG------LGTNLTGANRVII 838 (1231)
Q Consensus 811 d~~i~VfLlSTkvGg------~GLNLt~AnrVIi 838 (1231)
++.|++.|....- ..+++.....||+
T Consensus 146 --~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lVi 177 (236)
T 2pl3_A 146 --NINILVCTPGRLLQHMDETVSFHATDLQMLVL 177 (236)
T ss_dssp --TCSEEEECHHHHHHHHHHCSSCCCTTCCEEEE
T ss_pred --CCCEEEECHHHHHHHHHhcCCcccccccEEEE
Confidence 3467776654331 1355666666655
No 205
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=34.74 E-value=43 Score=31.60 Aligned_cols=49 Identities=8% Similarity=0.089 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhcC-CeEEEEec-cHHHHHHHHHHHHHcCCcEEEEeCCCCH
Q 044798 749 KVVAQVLKVWKDQG-HRVLLFAQ-TQQMLDILESFLIASGYEYRRMDGLTPV 798 (1231)
Q Consensus 749 ~~L~eLLk~~~~~g-~KVLVFSQ-~~~~LdiLe~~L~~~Gi~~~rIdGsts~ 798 (1231)
..+...+..+. .+ .++||||. .-.........|...|+++..|+|++..
T Consensus 76 ~~~~~~~~~~~-~~~~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 76 KDIYLQAAELA-LNYDNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp HHHHHHHHHHH-TTCSEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred HHHHHHHHHhc-cCCCeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 33444444433 34 79999994 5555667888899999999999998753
No 206
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.43 E-value=17 Score=42.86 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=36.1
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEK 471 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~k 471 (1231)
.+|.+|.-..|+|||+.|=|++..+ ..+++.|....++..|..+-.+
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~-----~~~f~~v~~s~l~~~~vGese~ 261 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT-----NATFLKLAAPQLVQMYIGEGAK 261 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH-----TCEEEEEEGGGGCSSCSSHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh-----CCCEEEEehhhhhhcccchHHH
Confidence 5688999999999999988777665 2477888888887777655443
No 207
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=34.26 E-value=1.4e+02 Score=28.17 Aligned_cols=48 Identities=13% Similarity=0.200 Sum_probs=44.3
Q ss_pred eEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCC
Q 044798 764 RVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNS 811 (1231)
Q Consensus 764 KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d 811 (1231)
-.+|||.-...|.-|...++..|+.++.+......+.|...+..|...
T Consensus 4 ifvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHc
Confidence 368999999999999999999999999999999999999999999865
No 208
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=32.50 E-value=68 Score=29.28 Aligned_cols=94 Identities=9% Similarity=-0.007 Sum_probs=52.0
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhC---CCCceEEEEeccccccccCC--CCCCEE
Q 044798 762 GHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN---SSDVFIFILTTKVGGLGTNL--TGANRV 836 (1231)
Q Consensus 762 g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~---d~~i~VfLlSTkvGg~GLNL--t~AnrV 836 (1231)
|..+..+......++.+ ....+.++.+|-.++...-..++...+. .+.+.+++++......-... .+|+.
T Consensus 27 g~~v~~~~~~~~a~~~l----~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~g~~~- 101 (127)
T 3i42_A 27 GFQADYVMSGTDALHAM----STRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVSGFAKNDLGKEACELFDF- 101 (127)
T ss_dssp TEEEEEESSHHHHHHHH----HHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEECC-CTTCCHHHHHHCSE-
T ss_pred CCCEEEECCHHHHHHHH----HhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEECCcchhHHHHHHHhhHH-
Confidence 56666666655555544 3456788888876654444455555554 35667777665433221111 13444
Q ss_pred EEcCCCCCcchHHHHHHhHHhhCCc
Q 044798 837 IIFDPDWNPSTDVQARERAWRIGQK 861 (1231)
Q Consensus 837 Ii~Dp~WNPs~d~QAigRa~RiGQk 861 (1231)
++.-|+++....+++.++++-++.
T Consensus 102 -~l~KP~~~~~L~~~i~~~~~~~~~ 125 (127)
T 3i42_A 102 -YLEKPIDIASLEPILQSIEGHHHH 125 (127)
T ss_dssp -EEESSCCHHHHHHHHHHHC-----
T ss_pred -heeCCCCHHHHHHHHHHhhccCCC
Confidence 334577888888888888765543
No 209
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=31.62 E-value=1.2e+02 Score=34.37 Aligned_cols=42 Identities=7% Similarity=-0.164 Sum_probs=31.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHH
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQ 464 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~Q 464 (1231)
..|+-+.|+|||.-++-+++.....+..+++|.|....-+.+
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH
Confidence 357889999999998888877765544568888887544443
No 210
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=31.50 E-value=2.1e+02 Score=31.59 Aligned_cols=93 Identities=14% Similarity=0.074 Sum_probs=59.8
Q ss_pred CCcchHHHHHH-HHHHHHHh--cCCeEEEEeccHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhCCCC
Q 044798 742 PERSEKMKVVA-QVLKVWKD--QGHRVLLFAQTQQMLDILESFLIAS-----GYEYRRMDGLTPVKQRMALIDEYNNSSD 813 (1231)
Q Consensus 742 ~~~S~Kl~~L~-eLLk~~~~--~g~KVLVFSQ~~~~LdiLe~~L~~~-----Gi~~~rIdGsts~~eRq~iId~Fn~d~~ 813 (1231)
+..+||..... -++..+.. .+.++||.+.++..+.-+...+... ++.+..+.|+.+.......+.. + .
T Consensus 53 ~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---~-~ 128 (391)
T 1xti_A 53 KSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK---N-C 128 (391)
T ss_dssp SSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHH---S-C
T ss_pred CCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhc---C-C
Confidence 45688886543 33333222 3558999999998877776666553 7899999999987766554432 2 3
Q ss_pred ceEEEEecccc-----ccccCCCCCCEEEE
Q 044798 814 VFIFILTTKVG-----GLGTNLTGANRVII 838 (1231)
Q Consensus 814 i~VfLlSTkvG-----g~GLNLt~AnrVIi 838 (1231)
..|++.|.... ...+++...+.||+
T Consensus 129 ~~iiv~T~~~l~~~~~~~~~~~~~~~~vVi 158 (391)
T 1xti_A 129 PHIVVGTPGRILALARNKSLNLKHIKHFIL 158 (391)
T ss_dssp CSEEEECHHHHHHHHHTTSSCCTTCSEEEE
T ss_pred CCEEEECHHHHHHHHHcCCccccccCEEEE
Confidence 46766665443 23356666776665
No 211
>4b1v_M Phosphatase and actin regulator 1; structural protein, nucleotide-binding, transcription regula transcription, muscle protein, ATP-binding; HET: ATP LAB; 1.75A {Mus musculus}
Probab=31.05 E-value=17 Score=26.58 Aligned_cols=15 Identities=33% Similarity=0.875 Sum_probs=12.1
Q ss_pred chhhhhHHHHhccCC
Q 044798 217 VETKRDELVRKGILT 231 (1231)
Q Consensus 217 ~~~~~~~~~~~~~~~ 231 (1231)
|.--|+|||+.|+|-
T Consensus 14 ~rqsreelikrgvlk 28 (32)
T 4b1v_M 14 MRQSREELIKRGVLK 28 (32)
T ss_dssp TCCCHHHHHHTTSCC
T ss_pred hcccHHHHHHhhhhh
Confidence 344699999999985
No 212
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=30.97 E-value=69 Score=39.84 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=34.3
Q ss_pred hchHHHHHHHHHHHHHHcCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCC
Q 044798 401 NLFDYQKVGVQWLWELHCQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPV 459 (1231)
Q Consensus 401 ~L~pyQkegV~wL~el~~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~ 459 (1231)
.+...|.++|..+.... .+-.+|-..-|-|||-.+-.++..+. ..++|.+|.
T Consensus 175 ~~T~dQ~~al~~~~~~~--~~~~vlta~RGRGKSa~lG~~~a~~~-----~~~~vtAP~ 226 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMP--PGVAAVTAARGRGKSALAGQLISRIA-----GRAIVTAPA 226 (671)
T ss_dssp SCCHHHHHHHHHHTTCC--SEEEEEEECTTSSHHHHHHHHHHHSS-----SCEEEECSS
T ss_pred CCCHHHHHHHHHHHHhh--hCeEEEecCCCCCHHHHHHHHHHHHH-----hCcEEECCC
Confidence 46678999998775532 22346777799999955444444442 346888895
No 213
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=30.92 E-value=1.2e+02 Score=36.24 Aligned_cols=79 Identities=8% Similarity=0.076 Sum_probs=59.5
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEec
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTT 821 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlST 821 (1231)
+..+||..+. ++..+.. +.++||.+..+..+.-....|...|+.+..++|..+..++......+..+ .+.++++|+
T Consensus 48 pTGsGKTl~~--~lp~l~~-~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~-~~~ilv~Tp 123 (523)
T 1oyw_A 48 PTGGGKSLCY--QIPALLL-NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTG-QIRLLYIAP 123 (523)
T ss_dssp SCHHHHHHHH--HHHHHHS-SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHT-CCSEEEECH
T ss_pred CCCcHHHHHH--HHHHHHh-CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCCEEEECH
Confidence 4568887532 2222222 35899999999998888888888999999999999998888888888776 567777776
Q ss_pred ccc
Q 044798 822 KVG 824 (1231)
Q Consensus 822 kvG 824 (1231)
...
T Consensus 124 e~l 126 (523)
T 1oyw_A 124 ERL 126 (523)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 214
>2wem_A Glutaredoxin-related protein 5; chromosome 14 open reading frame 87, Fe/S cluster, oxidoreductase, thioredoxin family, GLRX5, FLB4739, C14ORF87; HET: GTT; 2.40A {Homo sapiens} PDB: 2wul_A*
Probab=30.86 E-value=1.2e+02 Score=28.79 Aligned_cols=46 Identities=17% Similarity=0.244 Sum_probs=36.6
Q ss_pred CeEEEEec------cHHHHHHHHHHHHHcCCc-EEEEeCCCCHHHHHHHHHHH
Q 044798 763 HRVLLFAQ------TQQMLDILESFLIASGYE-YRRMDGLTPVKQRMALIDEY 808 (1231)
Q Consensus 763 ~KVLVFSQ------~~~~LdiLe~~L~~~Gi~-~~rIdGsts~~eRq~iId~F 808 (1231)
++|+||+. +-........+|...|++ |..++=......|+.+....
T Consensus 20 ~~Vvvfsk~t~~~p~Cp~C~~ak~lL~~~gv~~~~~vdV~~d~~~~~~l~~~t 72 (118)
T 2wem_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYS 72 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCCCEEEESSSCHHHHHHHHHHH
T ss_pred CCEEEEEecCCCCCccHHHHHHHHHHHHcCCCCCEEEEcCCCHHHHHHHHHHh
Confidence 59999988 577889999999999995 99888777766666655443
No 215
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=30.33 E-value=1.2e+02 Score=31.15 Aligned_cols=92 Identities=15% Similarity=0.109 Sum_probs=53.8
Q ss_pred CCcchHHHH-HHHHHHHHH--------hcCCeEEEEeccHHHHHHHHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHh
Q 044798 742 PERSEKMKV-VAQVLKVWK--------DQGHRVLLFAQTQQMLDILESFLIAS---GYEYRRMDGLTPVKQRMALIDEYN 809 (1231)
Q Consensus 742 ~~~S~Kl~~-L~eLLk~~~--------~~g~KVLVFSQ~~~~LdiLe~~L~~~---Gi~~~rIdGsts~~eRq~iId~Fn 809 (1231)
+..+||..+ +.-++..+. ..+.++||.+.++....-+...+... ++.+..+.|+.+...+.. .+.
T Consensus 65 pTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 141 (228)
T 3iuy_A 65 QTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIE---DIS 141 (228)
T ss_dssp CTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHH---HHH
T ss_pred CCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHH---Hhc
Confidence 456888754 333343332 25678999999999888888777763 788889998876544332 333
Q ss_pred CCCCceEEEEecccc-----ccccCCCCCCEEEE
Q 044798 810 NSSDVFIFILTTKVG-----GLGTNLTGANRVII 838 (1231)
Q Consensus 810 ~d~~i~VfLlSTkvG-----g~GLNLt~AnrVIi 838 (1231)
.+ +.|++.|.... ...+++...+.||+
T Consensus 142 ~~--~~iiv~Tp~~l~~~~~~~~~~~~~~~~lVi 173 (228)
T 3iuy_A 142 KG--VDIIIATPGRLNDLQMNNSVNLRSITYLVI 173 (228)
T ss_dssp SC--CSEEEECHHHHHHHHHTTCCCCTTCCEEEE
T ss_pred CC--CCEEEECHHHHHHHHHcCCcCcccceEEEE
Confidence 33 46666664332 22455666666665
No 216
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=29.35 E-value=69 Score=35.61 Aligned_cols=50 Identities=12% Similarity=-0.045 Sum_probs=35.8
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEK 471 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~k 471 (1231)
+.=.+|+...|+|||.-++.++......+ .++|+++.-.-..+....+..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE~s~~~l~~R~~~ 117 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLEMGKKENIKRLIV 117 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESSSCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECCCCHHHHHHHHHH
Confidence 34478999999999988887776654433 789999986555555555443
No 217
>2yan_A Glutaredoxin-3; oxidoreductase; HET: GSH; 1.90A {Homo sapiens}
Probab=29.29 E-value=1.5e+02 Score=26.85 Aligned_cols=56 Identities=27% Similarity=0.283 Sum_probs=40.8
Q ss_pred HHHHHHhcCCeEEEEec------cHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhC
Q 044798 754 VLKVWKDQGHRVLLFAQ------TQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN 810 (1231)
Q Consensus 754 LLk~~~~~g~KVLVFSQ------~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~ 810 (1231)
.+..... .++|+||+. +-.....+..+|...|+.|..++=......+..+...+..
T Consensus 9 ~~~~~i~-~~~vvvf~~g~~~~~~C~~C~~~~~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g~ 70 (105)
T 2yan_A 9 RLKVLTN-KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKAYSNW 70 (105)
T ss_dssp HHHHHHT-SSSEEEEESBCSSSBCTTHHHHHHHHHHHHTCCCEEEEGGGCHHHHHHHHHHHTC
T ss_pred HHHHHhc-cCCEEEEEecCCCCCCCccHHHHHHHHHHCCCCeEEEECCCCHHHHHHHHHHHCC
Confidence 3333333 347999974 5567888889999999999999988777777776666644
No 218
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=29.00 E-value=60 Score=31.44 Aligned_cols=24 Identities=8% Similarity=-0.049 Sum_probs=19.0
Q ss_pred cCCCcEEEEeCCCchHHHHHHHHH
Q 044798 418 CQRAGGIIGDEMGLGKTIQVLSFL 441 (1231)
Q Consensus 418 ~~~~GgILADEMGLGKTIqaIA~L 441 (1231)
......+|.-+.|+|||..|-++.
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHH
Confidence 456678999999999998776543
No 219
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=28.93 E-value=2.5e+02 Score=25.76 Aligned_cols=24 Identities=13% Similarity=0.354 Sum_probs=11.2
Q ss_pred eEEEEeccHHHHHHHHHHHHHcCC
Q 044798 764 RVLLFAQTQQMLDILESFLIASGY 787 (1231)
Q Consensus 764 KVLVFSQ~~~~LdiLe~~L~~~Gi 787 (1231)
++||..........|...|...|+
T Consensus 9 ~iLivdd~~~~~~~l~~~L~~~g~ 32 (142)
T 3cg4_A 9 DVMIVDDDAHVRIAVKTILSDAGF 32 (142)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC
T ss_pred eEEEEcCCHHHHHHHHHHHHHCCe
Confidence 444444444444444444444444
No 220
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=28.79 E-value=1.7e+02 Score=32.20 Aligned_cols=32 Identities=16% Similarity=0.082 Sum_probs=22.1
Q ss_pred EEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC
Q 044798 425 IGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP 458 (1231)
Q Consensus 425 LADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P 458 (1231)
+.-..|.|||..+..+...+... .+.++++.-
T Consensus 103 i~g~~G~GKTT~~~~la~~~~~~--~~~v~l~~~ 134 (295)
T 1ls1_A 103 LVGLQGSGKTTTAAKLALYYKGK--GRRPLLVAA 134 (295)
T ss_dssp EECCTTTTHHHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred EECCCCCCHHHHHHHHHHHHHHc--CCeEEEecC
Confidence 34678999998877666655433 467777764
No 221
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=27.24 E-value=46 Score=32.27 Aligned_cols=49 Identities=14% Similarity=0.007 Sum_probs=29.0
Q ss_pred cCCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHH
Q 044798 418 CQRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKW 472 (1231)
Q Consensus 418 ~~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw 472 (1231)
......+|.-+.|+|||..|-++. .... +++.|-...+...|...+-..
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~----~~~~--~~~~~~~~~~~~~~~~~~~~~ 73 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFH----KNGT--PWVSPARVEYLIDMPMELLQK 73 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGC----CTTS--CEECCSSTTHHHHCHHHHHHH
T ss_pred CCCCcEEEECCCCccHHHHHHHHH----HhCC--CeEEechhhCChHhhhhHHHh
Confidence 456788999999999997654332 2111 555544455555554444333
No 222
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=27.07 E-value=2.4e+02 Score=28.24 Aligned_cols=92 Identities=12% Similarity=0.041 Sum_probs=58.3
Q ss_pred CCcchHHHH-HHHHHHHHH-----hcCCeEEEEeccHHHHHHHHHHHHHc--CCcEEEEeCCCCHHHHHHHHHHHhCCCC
Q 044798 742 PERSEKMKV-VAQVLKVWK-----DQGHRVLLFAQTQQMLDILESFLIAS--GYEYRRMDGLTPVKQRMALIDEYNNSSD 813 (1231)
Q Consensus 742 ~~~S~Kl~~-L~eLLk~~~-----~~g~KVLVFSQ~~~~LdiLe~~L~~~--Gi~~~rIdGsts~~eRq~iId~Fn~d~~ 813 (1231)
+..+||... +.-++..+. ..+.++||.+.++....-+...+... ++.+..+.|..+.......+. . .
T Consensus 46 ~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~ 120 (207)
T 2gxq_A 46 RTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL---R--G 120 (207)
T ss_dssp CTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH---H--C
T ss_pred CCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh---C--C
Confidence 456888866 444555442 34678999999988887777777765 478888999887554433332 2 2
Q ss_pred ceEEEEecccc-----ccccCCCCCCEEEE
Q 044798 814 VFIFILTTKVG-----GLGTNLTGANRVII 838 (1231)
Q Consensus 814 i~VfLlSTkvG-----g~GLNLt~AnrVIi 838 (1231)
+.|++.|.... ...+++...+.||+
T Consensus 121 ~~i~v~T~~~l~~~~~~~~~~~~~~~~iVi 150 (207)
T 2gxq_A 121 ADAVVATPGRALDYLRQGVLDLSRVEVAVL 150 (207)
T ss_dssp CSEEEECHHHHHHHHHHTSSCCTTCSEEEE
T ss_pred CCEEEECHHHHHHHHHcCCcchhhceEEEE
Confidence 35666664332 12355666666665
No 223
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=26.93 E-value=59 Score=33.51 Aligned_cols=34 Identities=21% Similarity=0.246 Sum_probs=26.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP 458 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P 458 (1231)
.|.+-..|.|||..++.++.++...+ .++|++=|
T Consensus 5 ~v~s~kgGvGKTt~a~nLa~~la~~G--~rVll~dp 38 (224)
T 1byi_A 5 FVTGTDTEVGKTVASCALLQAAKAAG--YRTAGYKP 38 (224)
T ss_dssp EEEESSTTSCHHHHHHHHHHHHHHTT--CCEEEECS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC--CCEEEEcc
Confidence 35566789999999999988887654 57888766
No 224
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=26.88 E-value=3.4e+02 Score=24.32 Aligned_cols=60 Identities=17% Similarity=0.348 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHhcCCeEEEEecc--HHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh
Q 044798 749 KVVAQVLKVWKDQGHRVLLFAQT--QQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYN 809 (1231)
Q Consensus 749 ~~L~eLLk~~~~~g~KVLVFSQ~--~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn 809 (1231)
+-+.++++.+++.|+..+||.+. ..-..-++..-++.|+.|-.+....+ ++-...+..|-
T Consensus 38 qdirdiiksmkdngkplvvfvngasqndvnefqneakkegvsydvlkstdp-eeltqrvrefl 99 (112)
T 2lnd_A 38 QDIRDIIKSMKDNGKPLVVFVNGASQNDVNEFQNEAKKEGVSYDVLKSTDP-EELTQRVREFL 99 (112)
T ss_dssp HHHHHHHHHHTTCCSCEEEEECSCCHHHHHHHHHHHHHHTCEEEEEECCCH-HHHHHHHHHHH
T ss_pred hhHHHHHHHHHhcCCeEEEEecCcccccHHHHHHHHHhcCcchhhhccCCH-HHHHHHHHHHH
Confidence 45788999999999999999874 44566677777888999999887654 55555556663
No 225
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=26.64 E-value=2e+02 Score=27.64 Aligned_cols=63 Identities=19% Similarity=0.259 Sum_probs=43.0
Q ss_pred CeEEEEecc------HHHHHHHHHHHHHcCC-cEEEEeCCCCHHHHHHHHHHHhCCCCceEEEEeccccc
Q 044798 763 HRVLLFAQT------QQMLDILESFLIASGY-EYRRMDGLTPVKQRMALIDEYNNSSDVFIFILTTKVGG 825 (1231)
Q Consensus 763 ~KVLVFSQ~------~~~LdiLe~~L~~~Gi-~~~rIdGsts~~eRq~iId~Fn~d~~i~VfLlSTkvGg 825 (1231)
++|+||+-. -.+.......|...|+ +|..++=....+-|+.+...-+...-+.||+=-.-+||
T Consensus 20 ~~VvvF~Kgt~~~P~C~fc~~ak~lL~~~gv~~~~~~~v~~~~~~r~~l~~~sg~~TvPqIFI~g~~IGG 89 (118)
T 2wul_A 20 DKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQGIKDYSNWPTIPQVYLNGEFVGG 89 (118)
T ss_dssp SSEEEEESBCSSSBSSHHHHHHHHHHHHTTCCSCEEEETTSCHHHHHHHHHHHTCCSSCEEEETTEEEEC
T ss_pred CCEEEEEcCCCCCCCCHHHHHHHHHHHHhCCcCeEeecccCCHHHHHHHHHhccCCCCCeEeECCEEECC
Confidence 599999653 4567778888888898 58888877777767666555444433466665444554
No 226
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=26.44 E-value=69 Score=35.73 Aligned_cols=53 Identities=17% Similarity=0.125 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHHHHcCC----CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeC
Q 044798 403 FDYQKVGVQWLWELHCQR----AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCP 458 (1231)
Q Consensus 403 ~pyQkegV~wL~el~~~~----~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P 458 (1231)
.+.++..+.++......+ .+.+|.-+.|+|||..+-++...+. ...|.+.+..
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~---~~~~~~~~~~ 105 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALG---PDTPFTAIAG 105 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC---SSCCEEEEEG
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc---ccCCcccccc
Confidence 456666776666654433 3678899999999999888777663 2235544443
No 227
>2wci_A Glutaredoxin-4; redox-active center, iron-sulfur cluster scaffolder, Fe2S2, homodimer, transport, glutathione, thioredoxin fold; HET: GSH; 1.90A {Escherichia coli} PDB: 1yka_A
Probab=26.44 E-value=1.5e+02 Score=28.97 Aligned_cols=48 Identities=21% Similarity=0.162 Sum_probs=38.0
Q ss_pred CeEEEEec------cHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhC
Q 044798 763 HRVLLFAQ------TQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN 810 (1231)
Q Consensus 763 ~KVLVFSQ------~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~ 810 (1231)
.+|+||+. +-.....+..+|...|++|..++=......|..+......
T Consensus 35 ~~Vvvy~ks~~~~~~Cp~C~~ak~~L~~~gv~y~~vdI~~d~~~~~~L~~~~G~ 88 (135)
T 2wci_A 35 NPILLYMKGSPKLPSCGFSAQAVQALAACGERFAYVDILQNPDIRAELPKYANW 88 (135)
T ss_dssp CSEEEEESBCSSSBSSHHHHHHHHHHHTTCSCCEEEEGGGCHHHHHHHHHHHTC
T ss_pred CCEEEEEEecCCCCCCccHHHHHHHHHHcCCceEEEECCCCHHHHHHHHHHHCC
Confidence 38999976 5677889999999999999999888777767666655543
No 228
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=26.33 E-value=85 Score=36.75 Aligned_cols=92 Identities=21% Similarity=0.199 Sum_probs=55.2
Q ss_pred CCcchHHHHHHHHHH-HHHhc----CCeEEEEeccHHHHHHHHHHH----HHcCCcEEEEeCCCCHHHHHHHHHHHhCCC
Q 044798 742 PERSEKMKVVAQVLK-VWKDQ----GHRVLLFAQTQQMLDILESFL----IASGYEYRRMDGLTPVKQRMALIDEYNNSS 812 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk-~~~~~----g~KVLVFSQ~~~~LdiLe~~L----~~~Gi~~~rIdGsts~~eRq~iId~Fn~d~ 812 (1231)
+..+||..+..-.+. .+... +.++||.+..+..+.-+...+ ...|+.+..++|+++...+...+. .
T Consensus 27 ~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-- 101 (555)
T 3tbk_A 27 PTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII---E-- 101 (555)
T ss_dssp CTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH---H--
T ss_pred CCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh---c--
Confidence 456888866444443 33322 679999999977655544444 444999999999986544322221 1
Q ss_pred CceEEEEeccccccc-----c-CCCCCCEEEE
Q 044798 813 DVFIFILTTKVGGLG-----T-NLTGANRVII 838 (1231)
Q Consensus 813 ~i~VfLlSTkvGg~G-----L-NLt~AnrVIi 838 (1231)
.+.|++.|+...-.- + ++...+.||+
T Consensus 102 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 133 (555)
T 3tbk_A 102 DNDIIILTPQILVNNLNNGAIPSLSVFTLMIF 133 (555)
T ss_dssp HCSEEEECHHHHHHHHHTSSSCCGGGCSEEEE
T ss_pred CCCEEEECHHHHHHHHhcCcccccccCCEEEE
Confidence 236777766544221 2 4555666666
No 229
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=26.11 E-value=1.1e+02 Score=35.76 Aligned_cols=92 Identities=16% Similarity=0.210 Sum_probs=53.4
Q ss_pred CCcchHHHHHHHHH-HHHHhc----CCeEEEEeccHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhCCC
Q 044798 742 PERSEKMKVVAQVL-KVWKDQ----GHRVLLFAQTQQMLDILESFLIA----SGYEYRRMDGLTPVKQRMALIDEYNNSS 812 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLL-k~~~~~----g~KVLVFSQ~~~~LdiLe~~L~~----~Gi~~~rIdGsts~~eRq~iId~Fn~d~ 812 (1231)
+..+||..+..-.+ ..+... +.++||.+..+..+.-+...+.. .|+.+..++|+++...+...+. .
T Consensus 30 ~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-- 104 (556)
T 4a2p_A 30 PTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI---E-- 104 (556)
T ss_dssp CTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH---H--
T ss_pred CCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh---C--
Confidence 45688876644443 333322 67899999998776555555544 4899999999986554332221 1
Q ss_pred CceEEEEecccccc----c-c-CCCCCCEEEE
Q 044798 813 DVFIFILTTKVGGL----G-T-NLTGANRVII 838 (1231)
Q Consensus 813 ~i~VfLlSTkvGg~----G-L-NLt~AnrVIi 838 (1231)
.+.|++.|+...-. | + ++...+.||+
T Consensus 105 ~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vVi 136 (556)
T 4a2p_A 105 DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 136 (556)
T ss_dssp HCSEEEECHHHHHHHHHSSSCCCSTTCSEEEE
T ss_pred CCCEEEECHHHHHHHHHhCcccccccCCEEEE
Confidence 23577776655432 1 3 5666777776
No 230
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=25.92 E-value=81 Score=32.74 Aligned_cols=49 Identities=20% Similarity=0.189 Sum_probs=33.9
Q ss_pred cEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHH
Q 044798 422 GGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEK 471 (1231)
Q Consensus 422 GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~k 471 (1231)
-.+++-+.|+|||.-++-++...... ...+++++.-..-..+....+..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~-~~~~v~~~s~E~~~~~~~~~~~~ 80 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEERARDLRREMAS 80 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSSCHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHh-cCCCceeecccCCHHHHHHHHHH
Confidence 46899999999998888776543221 23688998876555565555544
No 231
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=25.57 E-value=95 Score=38.14 Aligned_cols=53 Identities=23% Similarity=0.222 Sum_probs=47.9
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeC
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDG 794 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdG 794 (1231)
|..+||...+.+++..+...|.+|||-+.+...+|-|...|...+.+++|+..
T Consensus 213 PPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~ilRlG~ 265 (646)
T 4b3f_X 213 PPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRILRLGH 265 (646)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCEEECSC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCceEEecc
Confidence 45789999999999999999999999999999999999999988999998743
No 232
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=25.55 E-value=69 Score=34.56 Aligned_cols=25 Identities=16% Similarity=0.076 Sum_probs=20.2
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
..+.+|.-+.|+|||..+-++...+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 5678899999999998877666554
No 233
>1u6t_A SH3 domain-binding glutamic acid-rich-like protein; SH3-binding, glutaredoxin, thioredoxin fold, crystallography, protein binding; HET: CIT; 1.90A {Homo sapiens} PDB: 1wry_A
Probab=25.19 E-value=81 Score=30.59 Aligned_cols=37 Identities=14% Similarity=0.082 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh
Q 044798 773 QMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYN 809 (1231)
Q Consensus 773 ~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn 809 (1231)
.-...+..+|..+|+.|..++=++....|..++.+.+
T Consensus 17 k~c~~aK~lL~~kgV~feEidI~~d~~~r~eM~~~~~ 53 (121)
T 1u6t_A 17 KKQQDVLGFLEANKIGFEEKDIAANEENRKWMRENVP 53 (121)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHhcc
Confidence 3357889999999999999999999999999999984
No 234
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=25.12 E-value=1.2e+02 Score=31.15 Aligned_cols=91 Identities=13% Similarity=0.073 Sum_probs=51.8
Q ss_pred CCcchHHHH-HHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCc
Q 044798 742 PERSEKMKV-VAQVLKVWKD--QGHRVLLFAQTQQMLDILESFLIA----SGYEYRRMDGLTPVKQRMALIDEYNNSSDV 814 (1231)
Q Consensus 742 ~~~S~Kl~~-L~eLLk~~~~--~g~KVLVFSQ~~~~LdiLe~~L~~----~Gi~~~rIdGsts~~eRq~iId~Fn~d~~i 814 (1231)
+..+||..+ +.-++..+.. .+.++||.+.++....-+...+.. .++.+..+.|..+....... +. ++
T Consensus 59 pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~---~~ 132 (224)
T 1qde_A 59 QSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR---DA 132 (224)
T ss_dssp CTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT---TC
T ss_pred CCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC---CC
Confidence 457889866 5555655432 356899999998877666665554 37889999998765443322 22 24
Q ss_pred eEEEEecccc-----ccccCCCCCCEEEE
Q 044798 815 FIFILTTKVG-----GLGTNLTGANRVII 838 (1231)
Q Consensus 815 ~VfLlSTkvG-----g~GLNLt~AnrVIi 838 (1231)
.|++.|.... ...+++...+.||+
T Consensus 133 ~iiv~Tp~~l~~~~~~~~~~~~~~~~iVi 161 (224)
T 1qde_A 133 QIVVGTPGRVFDNIQRRRFRTDKIKMFIL 161 (224)
T ss_dssp SEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred CEEEECHHHHHHHHHhCCcchhhCcEEEE
Confidence 6766665432 22445556666655
No 235
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=24.59 E-value=1.2e+02 Score=31.27 Aligned_cols=48 Identities=23% Similarity=0.102 Sum_probs=33.9
Q ss_pred CcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHH
Q 044798 421 AGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAE 470 (1231)
Q Consensus 421 ~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~ 470 (1231)
.-.+|+-+.|+|||.-++.++..+... ..+++++.-.....++...+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~--~~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKM--GEPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHT--TCCEEEEESSSCHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEccCCHHHHHHHHH
Confidence 345778899999999888777666543 468888887655555554444
No 236
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=24.56 E-value=36 Score=39.94 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=31.5
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKR 467 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~ 467 (1231)
+.|.+|.-+.|+|||..|-++...+. ...+++.|....+...|..
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~---~~~~~~~~~~~~~~~~~~~ 107 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG---SKVPFCPMVGSEVYSTEIK 107 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC---TTSCEEEEEGGGGCCSSSC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC---CCceEEEEeHHHHHHHhhh
Confidence 35788999999999999888777652 2246666666555544433
No 237
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=24.43 E-value=1.3e+02 Score=35.13 Aligned_cols=86 Identities=15% Similarity=0.045 Sum_probs=0.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHHcCCCeEEEEecccchhhhhhhhccCCCCCC
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKWYPSFHVELLHDSAQDLGFRKKRAKSSDTDN 502 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw~p~lrV~il~gs~~~~~~~~kr~~~~~~~~ 502 (1231)
.+++-..|.|||..+..+...+...+ ++++++.-..--..-...+..|.....+.++.....
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~g--~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~---------------- 162 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGKG--RRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDG---------------- 162 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTT--CCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTT----------------
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEeeccccCchhHHHHHHhcccCCccEEecCCC----------------
Q ss_pred CCCCCCCCCccCcccCCCcchhhHHHHhhhcCCCCEEEeCHHHH-HHHHhhhhcCCccEEEEe
Q 044798 503 DGEGSHDSDYEGNLSSRNPKKWDLLINRVLRSESGLLITTYEQL-RLLGEKLLDVEWGYAVLD 564 (1231)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~k~~~~~i~~~~~~~~~VvItTYe~L-r~~~~~L~~~~wd~VILD 564 (1231)
.++..+ ......+....+|+||+|
T Consensus 163 --------------------------------------~~p~~i~~~~l~~~~~~~~DvVIID 187 (425)
T 2ffh_A 163 --------------------------------------ESPESIRRRVEEKARLEARDLILVD 187 (425)
T ss_dssp --------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred --------------------------------------CCHHHHHHHHHHHHHHCCCCEEEEc
No 238
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=24.34 E-value=42 Score=42.72 Aligned_cols=23 Identities=22% Similarity=0.236 Sum_probs=18.3
Q ss_pred CCcEEEEeCCCchHHHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLG 442 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~ 442 (1231)
.+|.+|.-..|+|||..+=++..
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~ 260 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVAN 260 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 35788999999999988765543
No 239
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=24.20 E-value=1.6e+02 Score=26.70 Aligned_cols=75 Identities=12% Similarity=0.055 Sum_probs=39.8
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhC-CCCceEEEEeccccc-----cc-cCCCCCCEEEEcCCCCCcchHHHHHHhHHhhC
Q 044798 787 YEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILTTKVGG-----LG-TNLTGANRVIIFDPDWNPSTDVQARERAWRIG 859 (1231)
Q Consensus 787 i~~~rIdGsts~~eRq~iId~Fn~-d~~i~VfLlSTkvGg-----~G-LNLt~AnrVIi~Dp~WNPs~d~QAigRa~RiG 859 (1231)
+..+.+|-.++...-..++..+.. .+.+.+++++..... .. .....+...-++.-|+++....+++.++...+
T Consensus 47 ~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 47 QDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 566777766665555556666554 345566666644321 10 11122222333445777888888887776654
Q ss_pred Cc
Q 044798 860 QK 861 (1231)
Q Consensus 860 Qk 861 (1231)
+.
T Consensus 127 ~~ 128 (135)
T 3eqz_A 127 AE 128 (135)
T ss_dssp --
T ss_pred cc
Confidence 43
No 240
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=24.16 E-value=1.2e+02 Score=36.37 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=18.5
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGA 443 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~ 443 (1231)
..|.+|.-+.|+|||..+=++...
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 357889999999999876655443
No 241
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=23.78 E-value=3.3e+02 Score=25.06 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=13.3
Q ss_pred eEEEEeccHHHHHHHHHHHHHcCCcE
Q 044798 764 RVLLFAQTQQMLDILESFLIASGYEY 789 (1231)
Q Consensus 764 KVLVFSQ~~~~LdiLe~~L~~~Gi~~ 789 (1231)
++||..........|...|...|+.+
T Consensus 7 ~ilivdd~~~~~~~l~~~L~~~g~~v 32 (140)
T 3h5i_A 7 KILIVEDSKFQAKTIANILNKYGYTV 32 (140)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEE
Confidence 45555555555555555555554443
No 242
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=23.75 E-value=80 Score=41.73 Aligned_cols=50 Identities=20% Similarity=0.165 Sum_probs=37.2
Q ss_pred EEeCCCchHHHHHHHHHHHHhhcCCC-CcEEEEeCCcchHHHHHHHHHHcC
Q 044798 425 IGDEMGLGKTIQVLSFLGALHFSNMY-KPSIVVCPVTLLRQWKREAEKWYP 474 (1231)
Q Consensus 425 LADEMGLGKTIqaIA~L~~L~~s~~~-kpvLIV~P~sLl~QW~~E~~kw~p 474 (1231)
+-.-.|+|||.+++.-++.+...+.. .++|+|||.....+-...+....+
T Consensus 6 V~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~TFt~~~rl~~~l~ 56 (1166)
T 3u4q_B 6 LVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQMTFLMEYELAKTPD 56 (1166)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGGHHHHHHHHTCCSS
T ss_pred EEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcccHHHHHHHHHhhh
Confidence 44458999999998888887665543 789999998877775556655443
No 243
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=23.55 E-value=1.5e+02 Score=37.32 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=53.1
Q ss_pred CCCcchHHHHHHHHHHHHHhc-----CCeEEEEeccHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhCC
Q 044798 741 NPERSEKMKVVAQVLKVWKDQ-----GHRVLLFAQTQQMLDILESFLIA----SGYEYRRMDGLTPVKQRMALIDEYNNS 811 (1231)
Q Consensus 741 ~~~~S~Kl~~L~eLLk~~~~~-----g~KVLVFSQ~~~~LdiLe~~L~~----~Gi~~~rIdGsts~~eRq~iId~Fn~d 811 (1231)
.+..+||..+..-.+...... +.++||.+..+..+.-+...+.. .|+.+..++|+++...+...+ ..
T Consensus 270 ~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~- 345 (797)
T 4a2q_A 270 APTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKV---IE- 345 (797)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHH---HH-
T ss_pred eCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHh---hC-
Confidence 345788887655444433222 67999999988766555544443 499999999998665543222 12
Q ss_pred CCceEEEEeccccccc-----c-CCCCCCEEEE
Q 044798 812 SDVFIFILTTKVGGLG-----T-NLTGANRVII 838 (1231)
Q Consensus 812 ~~i~VfLlSTkvGg~G-----L-NLt~AnrVIi 838 (1231)
.+.|++.|+...-.- + .+...+.||+
T Consensus 346 -~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 377 (797)
T 4a2q_A 346 -DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (797)
T ss_dssp -TCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred -CCCEEEEchHHHHHHHHhccccccccCCEEEE
Confidence 246777665543221 2 4555666665
No 244
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=23.37 E-value=5.2e+02 Score=29.04 Aligned_cols=33 Identities=12% Similarity=-0.100 Sum_probs=25.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEe
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVC 457 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~ 457 (1231)
+|..---|.|||..++.+...+... ..++|+|=
T Consensus 147 av~s~KGGvGKTT~a~nLA~~La~~--g~rVlliD 179 (373)
T 3fkq_A 147 IFTSPCGGVGTSTVAAACAIAHANM--GKKVFYLN 179 (373)
T ss_dssp EEECSSTTSSHHHHHHHHHHHHHHH--TCCEEEEE
T ss_pred EEECCCCCChHHHHHHHHHHHHHhC--CCCEEEEE
Confidence 3556688999999999888887654 35788775
No 245
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=23.32 E-value=54 Score=36.26 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=21.0
Q ss_pred cCCCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 418 CQRAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 418 ~~~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
..+.+.+|.-+.|+|||..+-++...+
T Consensus 44 ~~~~~vll~G~pGtGKT~la~~la~~~ 70 (331)
T 2r44_A 44 CTGGHILLEGVPGLAKTLSVNTLAKTM 70 (331)
T ss_dssp HHTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred HcCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 346788999999999998877665543
No 246
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=23.14 E-value=1e+02 Score=34.66 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=19.7
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGAL 444 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L 444 (1231)
..+.+|.-++|+|||..|-++...+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4578899999999999877665544
No 247
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=23.12 E-value=1.3e+02 Score=42.03 Aligned_cols=50 Identities=20% Similarity=0.005 Sum_probs=36.2
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHHHH
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAEKW 472 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~kw 472 (1231)
.+.+.+|.-..|+|||..+++++...... ...++++.....+.+-. ..+|
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~--a~~~ 1475 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY--ARKL 1475 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH--HHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH--HHHc
Confidence 45678899999999999999998766533 46788888865544433 4444
No 248
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=22.74 E-value=1.3e+02 Score=27.48 Aligned_cols=29 Identities=21% Similarity=0.365 Sum_probs=20.8
Q ss_pred CCeEEEEeccHHHHHHHHHHHHHcCCcEE
Q 044798 762 GHRVLLFAQTQQMLDILESFLIASGYEYR 790 (1231)
Q Consensus 762 g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~ 790 (1231)
+.++||..........|...|...|+.+.
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~ 34 (132)
T 3lte_A 6 SKRILVVDDDQAMAAAIERVLKRDHWQVE 34 (132)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEE
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCcEEE
Confidence 45777777777777888888877777554
No 249
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=22.00 E-value=52 Score=34.26 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=22.3
Q ss_pred EeCCCchHHHHHHHHHHHHhhcCCCCcEEEE
Q 044798 426 GDEMGLGKTIQVLSFLGALHFSNMYKPSIVV 456 (1231)
Q Consensus 426 ADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV 456 (1231)
.---|.|||..++.+...+...+ .++|+|
T Consensus 6 s~kGGvGKTt~a~~LA~~la~~g--~~Vlli 34 (254)
T 3kjh_A 6 AGKGGVGKTTVAAGLIKIMASDY--DKIYAV 34 (254)
T ss_dssp ECSSSHHHHHHHHHHHHHHTTTC--SCEEEE
T ss_pred ecCCCCCHHHHHHHHHHHHHHCC--CeEEEE
Confidence 44679999999998888876543 677776
No 250
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=21.85 E-value=50 Score=30.56 Aligned_cols=38 Identities=11% Similarity=0.152 Sum_probs=32.4
Q ss_pred hcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCC
Q 044798 760 DQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTP 797 (1231)
Q Consensus 760 ~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts 797 (1231)
..+.+++|||+.-.........|...||++..|+|++.
T Consensus 53 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~ 90 (108)
T 3gk5_A 53 ERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQ 90 (108)
T ss_dssp CTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHH
Confidence 34678999999877778888999999999999999864
No 251
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=21.76 E-value=31 Score=36.07 Aligned_cols=41 Identities=15% Similarity=0.135 Sum_probs=25.4
Q ss_pred CccEEEEeCCcccCCc---chHHHHHHHhccccc----EEEecccCcc
Q 044798 557 EWGYAVLDEGHRIRNP---NAEISLVCKQLQTVH----RIIMTGAPIQ 597 (1231)
Q Consensus 557 ~wd~VILDEAH~IKN~---~Sk~skalk~L~t~~----RllLTGTPiq 597 (1231)
.-.+|||||||.+-++ .......+..+...+ -++|.|.|..
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~ 134 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPK 134 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGG
T ss_pred CceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHH
Confidence 3568999999999332 222224455554432 4888888843
No 252
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=21.63 E-value=1.4e+02 Score=26.05 Aligned_cols=88 Identities=13% Similarity=0.115 Sum_probs=40.5
Q ss_pred cCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCC---CCceEEEEeccccccccCC--CCCCE
Q 044798 761 QGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNNS---SDVFIFILTTKVGGLGTNL--TGANR 835 (1231)
Q Consensus 761 ~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~d---~~i~VfLlSTkvGg~GLNL--t~Anr 835 (1231)
.|..+..++.....+..+. ...+..+.++-.++...-..++...+.. +.+.+++++...... .. .+++.
T Consensus 24 ~g~~v~~~~~~~~~~~~l~----~~~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~~~~~--~~~~~g~~~ 97 (119)
T 2j48_A 24 AGFKVIWLVDGSTALDQLD----LLQPIVILMAWPPPDQSCLLLLQHLREHQADPHPPLVLFLGEPPVD--PLLTAQASA 97 (119)
T ss_dssp TTCEEEEESCHHHHHHHHH----HHCCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCCEEEESSCCSS--HHHHHHCSE
T ss_pred CCcEEEEecCHHHHHHHHH----hcCCCEEEEecCCCCCCHHHHHHHHHhccccCCCCEEEEeCCCCch--hhhhcCHHH
Confidence 3555655555444444443 2346666666554432233344444332 344555555432222 11 12333
Q ss_pred EEEcCCCCCcchHHHHHHhHH
Q 044798 836 VIIFDPDWNPSTDVQARERAW 856 (1231)
Q Consensus 836 VIi~Dp~WNPs~d~QAigRa~ 856 (1231)
+ +.-|.++....+++.++.
T Consensus 98 ~--l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 98 I--LSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp E--CSSCSTTHHHHHHHHTTC
T ss_pred h--ccCCCCHHHHHHHHHHHh
Confidence 2 334556666666665543
No 253
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=21.56 E-value=2.7e+02 Score=31.72 Aligned_cols=40 Identities=15% Similarity=-0.039 Sum_probs=29.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHH
Q 044798 423 GIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQ 464 (1231)
Q Consensus 423 gILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~Q 464 (1231)
.+|.-+.|+|||.-++.++..+... .+++++|.......+
T Consensus 64 ~~I~GppGsGKSTLal~la~~~~~~--gg~VlyId~E~s~~~ 103 (356)
T 3hr8_A 64 VEIFGQESSGKTTLALHAIAEAQKM--GGVAAFIDAEHALDP 103 (356)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--TCCEEEEESSCCCCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEecccccch
Confidence 4567889999998888777766543 367888888655444
No 254
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=21.51 E-value=97 Score=31.25 Aligned_cols=78 Identities=18% Similarity=0.203 Sum_probs=43.7
Q ss_pred CCcchHHHHHHHHHHHHHh------cCCeEEEEeccHHHHHH-HHHHHHHc---CCcEEEEeCCCCHHHHHHHHHHHhCC
Q 044798 742 PERSEKMKVVAQVLKVWKD------QGHRVLLFAQTQQMLDI-LESFLIAS---GYEYRRMDGLTPVKQRMALIDEYNNS 811 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~------~g~KVLVFSQ~~~~Ldi-Le~~L~~~---Gi~~~rIdGsts~~eRq~iId~Fn~d 811 (1231)
+..+||..+....+..+.. .+.++||.+.....++- +...+... ++.+..++|......+...+. .
T Consensus 56 ~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~---~- 131 (216)
T 3b6e_A 56 PTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV---K- 131 (216)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH---H-
T ss_pred CCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc---c-
Confidence 3467887766555543321 25799999999877655 54444432 678889998764332221111 1
Q ss_pred CCceEEEEecccc
Q 044798 812 SDVFIFILTTKVG 824 (1231)
Q Consensus 812 ~~i~VfLlSTkvG 824 (1231)
...|++.|....
T Consensus 132 -~~~i~v~T~~~l 143 (216)
T 3b6e_A 132 -SCDIIISTAQIL 143 (216)
T ss_dssp -HCSEEEEEHHHH
T ss_pred -CCCEEEECHHHH
Confidence 235666665543
No 255
>1wik_A Thioredoxin-like protein 2; picot homology 2 domain, picot protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=21.38 E-value=1.5e+02 Score=27.33 Aligned_cols=48 Identities=25% Similarity=0.277 Sum_probs=37.1
Q ss_pred CCeEEEEec------cHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHh
Q 044798 762 GHRVLLFAQ------TQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYN 809 (1231)
Q Consensus 762 g~KVLVFSQ------~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn 809 (1231)
.++|+||+. +-.....+..+|...|+.|..++=......+..+...+.
T Consensus 14 ~~~vvvy~~g~~~~~~Cp~C~~ak~~L~~~~i~~~~vdi~~~~~~~~~l~~~~g 67 (109)
T 1wik_A 14 KASVMLFMKGNKQEAKCGFSKQILEILNSTGVEYETFDILEDEEVRQGLKTFSN 67 (109)
T ss_dssp TSSEEEEESSTTTCCCSSTHHHHHHHHHHTCSCEEEEESSSCHHHHHHHHHHHS
T ss_pred cCCEEEEEecCCCCCCCchHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHhC
Confidence 458999977 334677888889999999999999887776776666554
No 256
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=21.13 E-value=1.3e+02 Score=34.04 Aligned_cols=48 Identities=19% Similarity=0.055 Sum_probs=35.2
Q ss_pred CCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHH
Q 044798 420 RAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREA 469 (1231)
Q Consensus 420 ~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~ 469 (1231)
+.=.||+...|+|||.-++.++..+.. ...++++++.-.-..|....+
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSlEms~~ql~~Rl 93 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSLEMSAEQLALRA 93 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEESSSCHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeCCCCHHHHHHHH
Confidence 334689999999999988877766654 347899999865555554444
No 257
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=20.97 E-value=1.1e+02 Score=36.04 Aligned_cols=50 Identities=12% Similarity=-0.057 Sum_probs=36.2
Q ss_pred CCCcEEEEeCCCchHHHHHHHHHHHHhhcCCCCcEEEEeCCcchHHHHHHHH
Q 044798 419 QRAGGIIGDEMGLGKTIQVLSFLGALHFSNMYKPSIVVCPVTLLRQWKREAE 470 (1231)
Q Consensus 419 ~~~GgILADEMGLGKTIqaIA~L~~L~~s~~~kpvLIV~P~sLl~QW~~E~~ 470 (1231)
.+.=.||+...|+|||.-++.++...... ..++|+++.-.-..|+...+.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEms~~ql~~R~~ 245 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEMGKKENIKRLI 245 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSSCTTHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHH
Confidence 34457899999999999888887776544 468999988655555544443
No 258
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=20.52 E-value=4.8e+02 Score=27.05 Aligned_cols=92 Identities=10% Similarity=0.010 Sum_probs=54.8
Q ss_pred CCcchHHHH-HHHHHHHHHh-----------cCCeEEEEeccHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHH
Q 044798 742 PERSEKMKV-VAQVLKVWKD-----------QGHRVLLFAQTQQMLDILESFLIA----SGYEYRRMDGLTPVKQRMALI 805 (1231)
Q Consensus 742 ~~~S~Kl~~-L~eLLk~~~~-----------~g~KVLVFSQ~~~~LdiLe~~L~~----~Gi~~~rIdGsts~~eRq~iI 805 (1231)
+..+||..+ +.-++..+.. .+.++||.+.++..+.-+...+.. .++.+..+.|..+.......
T Consensus 68 ~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~- 146 (253)
T 1wrb_A 68 QTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIRE- 146 (253)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHH-
T ss_pred CCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH-
Confidence 346788764 3344444332 235899999998876666555543 46788889998765543322
Q ss_pred HHHhCCCCceEEEEeccccc-----cccCCCCCCEEEE
Q 044798 806 DEYNNSSDVFIFILTTKVGG-----LGTNLTGANRVII 838 (1231)
Q Consensus 806 d~Fn~d~~i~VfLlSTkvGg-----~GLNLt~AnrVIi 838 (1231)
+.. .+.|++.|....- ..+++.....||+
T Consensus 147 --~~~--~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lVi 180 (253)
T 1wrb_A 147 --VQM--GCHLLVATPGRLVDFIEKNKISLEFCKYIVL 180 (253)
T ss_dssp --HSS--CCSEEEECHHHHHHHHHTTSBCCTTCCEEEE
T ss_pred --hCC--CCCEEEECHHHHHHHHHcCCCChhhCCEEEE
Confidence 233 3467666654332 2345666666665
No 259
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=20.46 E-value=2.2e+02 Score=34.60 Aligned_cols=79 Identities=13% Similarity=0.080 Sum_probs=57.8
Q ss_pred CCcchHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhC-CCCceEEEEe
Q 044798 742 PERSEKMKVVAQVLKVWKDQGHRVLLFAQTQQMLDILESFLIASGYEYRRMDGLTPVKQRMALIDEYNN-SSDVFIFILT 820 (1231)
Q Consensus 742 ~~~S~Kl~~L~eLLk~~~~~g~KVLVFSQ~~~~LdiLe~~L~~~Gi~~~rIdGsts~~eRq~iId~Fn~-d~~i~VfLlS 820 (1231)
+..+||..+. +|..+.. +.++||.+..+..+.-....|...|+.+..++|+++..++..+...+.. ...+.++++|
T Consensus 67 pTGsGKTl~~--~lpal~~-~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~T 143 (591)
T 2v1x_A 67 PTGGGKSLCY--QLPALCS-DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVT 143 (591)
T ss_dssp CTTSCTTHHH--HHHHHTS-SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEEC
T ss_pred CCCChHHHHH--HHHHHHc-CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEC
Confidence 3457776432 2222222 4589999999998887888888889999999999999998888888842 3356787777
Q ss_pred ccc
Q 044798 821 TKV 823 (1231)
Q Consensus 821 Tkv 823 (1231)
...
T Consensus 144 pe~ 146 (591)
T 2v1x_A 144 PEK 146 (591)
T ss_dssp HHH
T ss_pred hhH
Confidence 643
Done!