Your job contains 1 sequence.
>044799
ILEGGRRPDLNRGIGIANLSTSIGPGTYGKNALLAQPDYDIVLLGKTEGGSLFLQKMLSG
KDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDM
MFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGG
LLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK
YQRPSIFTPCQHKYGNFVIQQALRVTKGFQMTERNIIQELGQSSFIQGIVPFNFHVVSYS
SLTK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 044799
(304 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2164165 - symbol:PUM18 "pumilio 18" species:37... 233 1.3e-23 2
TAIR|locus:2144010 - symbol:PUM19 "pumilio 19" species:37... 222 4.7e-22 2
TAIR|locus:2167111 - symbol:PUM12 "pumilio 12" species:37... 226 3.8e-21 2
TAIR|locus:2015036 - symbol:PUM8 "pumilio 8" species:3702... 253 5.9e-21 1
TAIR|locus:2194699 - symbol:PUM7 "pumilio 7" species:3702... 223 1.8e-17 1
TAIR|locus:2011349 - symbol:PUM9 "pumilio 9" species:3702... 222 5.2e-17 1
TAIR|locus:2144711 - symbol:PUM21 "pumilio 21" species:37... 219 2.1e-16 1
TAIR|locus:2168529 - symbol:PUM16 "pumilio 16" species:37... 196 3.1e-15 2
ASPGD|ASPL0000057098 - symbol:AN10071 species:162425 "Eme... 207 2.2e-14 1
TAIR|locus:2138258 - symbol:PUM11 "pumilio 11" species:37... 202 7.4e-14 1
DICTYBASE|DDB_G0279557 - symbol:DDB_G0279557 "pumilio RNA... 186 1.2e-11 1
TAIR|locus:2011360 - symbol:PUM10 "pumilio 10" species:37... 183 1.4e-11 1
POMBASE|SPAC6G9.14 - symbol:SPAC6G9.14 "RNA-binding prote... 156 7.5e-11 2
SGD|S000002982 - symbol:PUF4 "Member of the PUF protein f... 179 7.9e-11 2
POMBASE|SPAC4G8.03c - symbol:SPAC4G8.03c "RNA-binding pro... 172 5.0e-10 1
DICTYBASE|DDB_G0289987 - symbol:DDB_G0289987 "Pumilio hom... 157 2.0e-08 2
TAIR|locus:2043182 - symbol:PUM1 "pumilio 1" species:3702... 156 4.5e-08 1
TAIR|locus:2043047 - symbol:PUM3 "pumilio 3" species:3702... 150 2.1e-07 1
TAIR|locus:2043187 - symbol:PUM2 "pumilio 2" species:3702... 150 2.2e-07 1
RGD|1311024 - symbol:Pum2 "pumilio homolog 2 (Drosophila)... 151 2.9e-07 2
UNIPROTKB|Q8TB72 - symbol:PUM2 "Pumilio homolog 2" specie... 151 4.4e-07 2
MGI|MGI:1931751 - symbol:Pum2 "pumilio 2 (Drosophila)" sp... 151 4.4e-07 2
UNIPROTKB|B4E2B6 - symbol:PUM2 "Pumilio homolog 2" specie... 149 6.6e-07 2
UNIPROTKB|H0YDK8 - symbol:PUM1 "Pumilio homolog 1" specie... 146 6.8e-07 2
UNIPROTKB|F1STL2 - symbol:PUM1 "Uncharacterized protein" ... 143 7.1e-07 2
UNIPROTKB|E2RT57 - symbol:PUM2 "Uncharacterized protein" ... 149 7.5e-07 2
UNIPROTKB|F1SCU6 - symbol:PUM2 "Uncharacterized protein" ... 149 7.5e-07 2
UNIPROTKB|F1N2B8 - symbol:PUM2 "Uncharacterized protein" ... 149 7.6e-07 2
DICTYBASE|DDB_G0279735 - symbol:pufA "RNA binding protein... 144 7.7e-07 1
UNIPROTKB|E7EWT3 - symbol:PUM1 "Pumilio homolog 1" specie... 146 9.8e-07 2
UNIPROTKB|F6XHY4 - symbol:PUM1 "Uncharacterized protein" ... 146 1.0e-06 2
MGI|MGI:1931749 - symbol:Pum1 "pumilio 1 (Drosophila)" sp... 147 1.0e-06 2
UNIPROTKB|E2QVA9 - symbol:PUM1 "Uncharacterized protein" ... 146 1.1e-06 2
RGD|1307190 - symbol:Pum1 "pumilio homolog 1 (Drosophila)... 144 1.3e-06 2
UNIPROTKB|E9PCJ0 - symbol:PUM1 "Pumilio homolog 1" specie... 146 1.3e-06 2
UNIPROTKB|Q5T1Z4 - symbol:PUM1 "Pumilio homolog 1" specie... 146 1.3e-06 2
UNIPROTKB|Q5T1Z8 - symbol:PUM1 "Pumilio homolog 1 (Drosop... 146 1.4e-06 2
UNIPROTKB|E9PR38 - symbol:PUM1 "Pumilio homolog 1" specie... 143 1.7e-06 2
UNIPROTKB|Q2VB19 - symbol:PUM1 "Pumilio homolog 1" specie... 144 1.8e-06 2
UNIPROTKB|F1NV23 - symbol:PUM2 "Uncharacterized protein" ... 145 2.1e-06 2
UNIPROTKB|E1BWC0 - symbol:PUM2 "Uncharacterized protein" ... 145 2.1e-06 2
UNIPROTKB|E1BE82 - symbol:PUM1 "Uncharacterized protein" ... 143 2.3e-06 2
UNIPROTKB|H0YEH2 - symbol:PUM1 "Pumilio homolog 1" specie... 143 2.6e-06 2
UNIPROTKB|B4DG92 - symbol:PUM1 "cDNA FLJ56067, highly sim... 143 2.6e-06 2
UNIPROTKB|Q14671 - symbol:PUM1 "Pumilio homolog 1" specie... 143 2.9e-06 2
ZFIN|ZDB-GENE-030131-2074 - symbol:pum1 "pumilio homolog ... 140 3.6e-06 1
TAIR|locus:2117552 - symbol:PUM6 "pumilio 6" species:3702... 137 5.4e-06 1
UNIPROTKB|H0YDC5 - symbol:PUM1 "Pumilio homolog 1" specie... 125 7.9e-06 1
FB|FBgn0003165 - symbol:pum "pumilio" species:7227 "Droso... 141 1.7e-05 3
POMBASE|SPAC1687.22c - symbol:puf3 "RNA-binding protein P... 126 7.3e-05 1
TAIR|locus:2133534 - symbol:PUM15 "pumilio 15" species:37... 123 8.7e-05 1
CGD|CAL0000028 - symbol:MPT5 species:5476 "Candida albica... 122 0.00028 1
TAIR|locus:2076324 - symbol:PUM4 "pumilio 4" species:3702... 121 0.00039 1
SGD|S000003146 - symbol:MPT5 "mRNA-binding protein of the... 120 0.00042 1
TAIR|locus:2087560 - symbol:PUM5 "pumilio 5" species:3702... 119 0.00062 1
UNIPROTKB|H0YC97 - symbol:PUM1 "Pumilio homolog 1" specie... 109 0.00077 1
>TAIR|locus:2164165 [details] [associations]
symbol:PUM18 "pumilio 18" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0007059 "chromosome segregation"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0007131
"reciprocal meiotic recombination" evidence=RCA] [GO:0042138
"meiotic DNA double-strand break formation" evidence=RCA]
InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB019231
eggNOG:COG5099 HOGENOM:HOG000152208 EMBL:DQ056729 IPI:IPI00533181
RefSeq:NP_200819.1 UniGene:At.55636 ProteinModelPortal:Q9LVG3
SMR:Q9LVG3 EnsemblPlants:AT5G60110.1 GeneID:836133
KEGG:ath:AT5G60110 TAIR:At5g60110 InParanoid:Q9LVG3 OMA:EMISNSD
PhylomeDB:Q9LVG3 ProtClustDB:CLSN2916299 Genevestigator:Q9LVG3
Uniprot:Q9LVG3
Length = 327
Score = 233 (87.1 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 73/227 (32%), Positives = 114/227 (50%)
Query: 19 LSTSIGPGTYGKNALLAQPDYDIVLLGKTEG-GSLFLQKMLSGKDSTITYKIFEAVYK-- 75
+S SI P + A A P + + T+G G + ++M+S D T ++ +
Sbjct: 23 ISGSIPPPGFAPRAS-ATPLHAALFNLMTDGDGVSYFKEMISNSDKTELQRMASLLTSDS 81
Query: 76 -YPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCL 134
Y ++T +G +R +QKL+ + +A RRF + K AS V I+ +
Sbjct: 82 DYFMSIVTTKFG---SRRVQKLLGK--SDDVDAFFCAAILRRFLHITTDKYASYVTIRAM 136
Query: 135 ETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPR-RGGLLDLISSHAEFLS 193
D+ + LY + H +LA GC++LN+ I + P R LL+L++S+A LS
Sbjct: 137 VVFDKVMKKALYERILYHALDLACDQHGCIALNDIITDADDPYYRDQLLELVASNALRLS 196
Query: 194 KDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK 240
D SGN+VVQHVL L D + I L G+ ELS + GS++VEK
Sbjct: 197 NDASGNFVVQHVLTLYDSRCIHNIAVNLYGQCIELSFKKYGSYIVEK 243
Score = 53 (23.7 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 251 QHKYGNFVIQQALRVTKGFQM 271
++++GNFV+ +ALR TK +M
Sbjct: 271 RNEFGNFVVVKALRFTKMSRM 291
>TAIR|locus:2144010 [details] [associations]
symbol:PUM19 "pumilio 19" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB026632
eggNOG:COG5099 HOGENOM:HOG000152208 IPI:IPI00541936
RefSeq:NP_200826.1 UniGene:At.66750 ProteinModelPortal:Q9LSS8
SMR:Q9LSS8 EnsemblPlants:AT5G60180.1 GeneID:836140
KEGG:ath:AT5G60180 TAIR:At5g60180 InParanoid:Q9LSS8 OMA:NPTETSG
PhylomeDB:Q9LSS8 Genevestigator:Q9LSS8 Uniprot:Q9LSS8
Length = 327
Score = 222 (83.2 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 66/199 (33%), Positives = 102/199 (51%)
Query: 47 TEG-GSLFLQKMLSGKDSTITYKIFEAVYK---YPFDLMTDGYGCHLARSMQKLIKLLVG 102
T+G G + ++M+S D T ++ + Y ++T +G +R +QKL+
Sbjct: 50 TDGDGVSYFKEMISKSDKTELQRMASLLTSDSDYFMSIVTTKFG---SRRVQKLLGK--S 104
Query: 103 SPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRG 162
+ +A RRF + K AS V I+ + D+ + LY + H +LA G
Sbjct: 105 DDVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHG 164
Query: 163 CVSLNNFINEMRGPR-RGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLL 221
C++LN+ I + P R LL+L+ S+A LS D SGN+VVQHVL L D + I L
Sbjct: 165 CIALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSRCIHNIAVNL 224
Query: 222 KGKFEELSLLRCGSHLVEK 240
G+ ELS + GS++VEK
Sbjct: 225 YGQCIELSFKKYGSYIVEK 243
Score = 56 (24.8 bits), Expect = 4.7e-22, Sum P(2) = 4.7e-22
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 251 QHKYGNFVIQQALRVTKGFQM 271
++++GNFV+ +ALR TK +M
Sbjct: 271 RNEFGNFVVVKALRFTKEMRM 291
>TAIR|locus:2167111 [details] [associations]
symbol:PUM12 "pumilio 12" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005634 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB019234 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00534318
RefSeq:NP_200462.2 UniGene:At.55587 ProteinModelPortal:Q9LVC3
SMR:Q9LVC3 STRING:Q9LVC3 EnsemblPlants:AT5G56510.1 GeneID:835752
KEGG:ath:AT5G56510 TAIR:At5g56510 HOGENOM:HOG000176955
InParanoid:Q9LVC3 OMA:NDIEMIF PhylomeDB:Q9LVC3
Genevestigator:Q9LVC3 Uniprot:Q9LVC3
Length = 596
Score = 226 (84.6 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 59/192 (30%), Positives = 104/192 (54%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK+L + +I ++ + P L+ H R++QK+++ IS++
Sbjct: 327 GNYLVQKLLEVCNEDQRMQIVHSITRKPGLLIKISCDMHGTRAVQKIVETAKREEEISII 386
Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
ISA ++ + + V+ +CL+ L + L+ AA+ H ELAT GC L
Sbjct: 387 ISALKHGIVHLIKNVNGNHVVQRCLQYLLPYCGKFLFEAAITHCVELATDRHGCCVLQKC 446
Query: 170 INEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSE-KICSLLKGKFEEL 228
+ G ++ L+ I+S+A LS+DP GNYV+Q+V L L+++ +I L+G + EL
Sbjct: 447 LGYSEGEQKQHLVSEIASNALLLSQDPFGNYVLQYVFEL-QLQWATFEILEQLEGNYTEL 505
Query: 229 SLLRCGSHLVEK 240
S+ +C S++VEK
Sbjct: 506 SMQKCSSNVVEK 517
Score = 112 (44.5 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 53/234 (22%), Positives = 103/234 (44%)
Query: 10 LNRGIGIANLSTSIGPGTYGKNALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKI 69
LN + ++ + S+ P Y +A+ I L K + G FLQ++ S KD I
Sbjct: 254 LNEDLTMSLNNLSLQPQKYNS---IAEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMI 310
Query: 70 FEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKE--AS 127
F + Y +LM D +G +L +QKL+++ + +V S + + S + +
Sbjct: 311 FNEIIDYISELMMDPFGNYL---VQKLLEVCNEDQRMQIVHSITRKPGLLIKISCDMHGT 367
Query: 128 SVIIKCLETLDEQKNEVLYLAAMNH-FRELATHVRGCVSLNNFINEMRGPRRGGLL-DLI 185
+ K +ET ++ + ++A+ H L +V G + + + P G L +
Sbjct: 368 RAVQKIVETAKREEEISIIISALKHGIVHLIKNVNGNHVVQRCLQYLL-PYCGKFLFEAA 426
Query: 186 SSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVE 239
+H L+ D G V+Q LG + + + + S + LS G+++++
Sbjct: 427 ITHCVELATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYVLQ 480
Score = 54 (24.1 bits), Expect = 3.8e-21, Sum P(2) = 3.8e-21
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 254 YGNFVIQQALRVTKG 268
YGN+VIQ AL+ +KG
Sbjct: 548 YGNYVIQAALKQSKG 562
>TAIR|locus:2015036 [details] [associations]
symbol:PUM8 "pumilio 8" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AC073942 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000176806 IPI:IPI00535613 PIR:B86355 RefSeq:NP_173643.1
UniGene:At.51720 ProteinModelPortal:Q9LM20 SMR:Q9LM20 PRIDE:Q9LM20
EnsemblPlants:AT1G22240.1 GeneID:838829 KEGG:ath:AT1G22240
TAIR:At1g22240 InParanoid:Q9LM20 OMA:FCIDIAT PhylomeDB:Q9LM20
ProtClustDB:CLSN2914398 Genevestigator:Q9LM20 Uniprot:Q9LM20
Length = 515
Score = 253 (94.1 bits), Expect = 5.9e-21, P = 5.9e-21
Identities = 78/235 (33%), Positives = 114/235 (48%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK+L + +I V P L+ + R +Q+L++ + ISLV
Sbjct: 248 GNYLMQKLLDVCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQISLV 307
Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
SA F +++ + VI +CL+ L + NE ++ A ++ATH GC L
Sbjct: 308 KSALRPGFLNLIRDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKC 367
Query: 170 INEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELS 229
I G +R L+ IS ++ FL++DP GNY VQ VL L D + + LKG + ELS
Sbjct: 368 IAYSSGLQREKLVTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVELS 427
Query: 230 LLRCGSHLVEKY------QRPSIF-----TP-----CQHKYGNFVIQQALRVTKG 268
+ + SH+VE+ RP I P Q Y NFVIQ AL VTKG
Sbjct: 428 MQKFSSHMVERCLTHCPESRPQIVRELISVPHFDILIQDPYANFVIQAALAVTKG 482
>TAIR|locus:2194699 [details] [associations]
symbol:PUM7 "pumilio 7" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=ISM] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0009507 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC012680 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00517199 PIR:H96810
RefSeq:NP_177940.2 UniGene:At.52554 ProteinModelPortal:Q9C9R6
SMR:Q9C9R6 EnsemblPlants:AT1G78160.1 GeneID:844152
KEGG:ath:AT1G78160 TAIR:At1g78160 HOGENOM:HOG000176806
InParanoid:Q9C9R6 OMA:REYSAYS PhylomeDB:Q9C9R6
Genevestigator:Q9C9R6 Uniprot:Q9C9R6
Length = 650
Score = 223 (83.6 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 72/235 (30%), Positives = 109/235 (46%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK+L +I + P L+ + R +Q+L++ + ISLV
Sbjct: 383 GNYLMQKLLDVCTEEQRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLV 442
Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
A F D++ + VI +CL+ L + N+ ++ AA E+ATH GC L
Sbjct: 443 KLALRPGFLDLIKDLNGNHVIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKC 502
Query: 170 INEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELS 229
I +R L+ IS ++ L++DP GNY VQ V+ L + + LKG + +LS
Sbjct: 503 IAYSMRQQREKLIAEISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLS 562
Query: 230 LLRCGSHLVEKY------QRPSIF-----TP-----CQHKYGNFVIQQALRVTKG 268
+ + SH+VE+ RP I P Q Y NFVIQ AL TKG
Sbjct: 563 MQKFSSHMVERCLMHCPESRPQIVRELVSVPHFDQLLQDPYANFVIQAALAATKG 617
>TAIR|locus:2011349 [details] [associations]
symbol:PUM9 "pumilio 9" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HOGENOM:HOG000124802 EMBL:DQ446324
IPI:IPI00533721 PIR:D86479 RefSeq:NP_174811.1 UniGene:At.51961
ProteinModelPortal:Q1PFN9 SMR:Q1PFN9 PRIDE:Q1PFN9
EnsemblPlants:AT1G35730.1 GeneID:840477 KEGG:ath:AT1G35730
TAIR:At1g35730 InParanoid:Q1PFN9 OMA:CAEIAIH PhylomeDB:Q1PFN9
ProtClustDB:CLSN2681930 Genevestigator:Q1PFN9 Uniprot:Q1PFN9
Length = 564
Score = 222 (83.2 bits), Expect = 5.2e-17, P = 5.2e-17
Identities = 83/274 (30%), Positives = 125/274 (45%)
Query: 14 IGIANLSTSIGPGTY--GKNALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFE 71
IG L + GT+ K LLA D+ +V L G+ +QK+ D I
Sbjct: 262 IGCRVLQKLVEEGTFHEAKVILLAIIDH-VVELSMDPFGNYIVQKLFDVSDEEQRTLIVS 320
Query: 72 AVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVII 131
+ P +L+ + R +QK+I+ + I+LV S F ++ + VI
Sbjct: 321 VLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIALVKSGLKPGFLALVKDLNGNHVIQ 380
Query: 132 KCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEF 191
CL+TL NE + AA + E+A H GC L I+ G +R L+ IS ++
Sbjct: 381 SCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCISNSVGLQRERLVAEISRNSLH 440
Query: 192 LSKDPSGNYVVQHVLGLGDLKYSE-KICSLLKGKFEELSLLRCGSHLVEKYQR------- 243
LS+DP GNYVVQ+++ D + S K+ + + EL+ + SH++EK R
Sbjct: 441 LSQDPFGNYVVQYLI---DQQVSAVKLLVQFRMHYAELATQKFSSHVIEKCLRKYPESRA 497
Query: 244 ---------PSIFTPCQHKYGNFVIQQALRVTKG 268
P+ Q Y N+VIQ AL VTKG
Sbjct: 498 EIVRELLCVPNFEYLLQDPYANYVIQTALSVTKG 531
>TAIR|locus:2144711 [details] [associations]
symbol:PUM21 "pumilio 21" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 GO:GO:0005737 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 EMBL:AB020752
EMBL:AL353994 eggNOG:COG5099 IPI:IPI00537619 PIR:T49937
RefSeq:NP_196523.1 UniGene:At.54788 ProteinModelPortal:Q9LXC5
SMR:Q9LXC5 EnsemblPlants:AT5G09610.1 GeneID:830820
KEGG:ath:AT5G09610 TAIR:At5g09610 HOGENOM:HOG000153154
InParanoid:Q9LXC5 OMA:HQEPGES PhylomeDB:Q9LXC5
ProtClustDB:CLSN2916885 Genevestigator:Q9LXC5 Uniprot:Q9LXC5
Length = 517
Score = 219 (82.2 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 76/246 (30%), Positives = 120/246 (48%)
Query: 55 QKMLSGKDSTITYKIFEAVYKYPFDLMTDG-YGCHLARSM---QKLIKLLVGSPCIS-LV 109
QK L D+ T + ++K L T HLA + Q L L SP + L+
Sbjct: 231 QKYLQDLDTYPTAERESHLFKIGSALTTTKRIFLHLATNQYGSQALRILFRRSPSLDHLL 290
Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
A F +M K +II + +D+ K E LY + LA GC++LNN
Sbjct: 291 FCAVDTNFFLLMSDKYGRGLIIPAIRAVDKTKKESLYKLTYEYTLHLARLETGCLALNNV 350
Query: 170 INEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELS 229
+ E+RG R + + ++++A++LS DP G +VVQ++L L + + I L+G F L+
Sbjct: 351 LQEIRGIYRDLIFECVANNADWLSFDPYGTHVVQNILILQNPVATTAIAERLRGSFFRLA 410
Query: 230 LLRCGSHLVEK-----YQRPSIFTPCQ-----------HKYGNFVIQQALRVTKGFQMTE 273
+ R GS++VEK + R + + K+GNFV+Q ALRV K +M
Sbjct: 411 MERQGSYVVEKCLKSDFARDQVLEEFRGNAKEWVRMTTDKFGNFVVQSALRVMKEKEM-- 468
Query: 274 RNIIQE 279
R +++E
Sbjct: 469 RPLLRE 474
>TAIR|locus:2168529 [details] [associations]
symbol:PUM16 "pumilio 16" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AB016890 IPI:IPI00533013 RefSeq:NP_200736.1 UniGene:At.65693
ProteinModelPortal:Q9FIE9 PRIDE:Q9FIE9 EnsemblPlants:AT5G59280.1
GeneID:836046 KEGG:ath:AT5G59280 TAIR:At5g59280
HOGENOM:HOG000152208 OMA:CTRNIAD Genevestigator:Q9FIE9
Uniprot:Q9FIE9
Length = 332
Score = 196 (74.1 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 51/152 (33%), Positives = 81/152 (53%)
Query: 90 ARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAA 149
++++QKL+ + A R F +M K AS V I+ + + K E++Y
Sbjct: 97 SKTLQKLMGM--SDDMDVFFFEAIMRLFIHVMTDKYASYVTIQGMRVFQQDKRELMYDQI 154
Query: 150 MNHFRELATHVRGCVSLNNFINEMRGPR-RGGLLDLISSHAEFLSKDPSGNYVVQHVLGL 208
+ + LA GC++LN I ++ P R LLD+++++A LS D GN+VVQHVL L
Sbjct: 155 LRYACFLAGDQYGCIALNEIITDLDDPYYRDQLLDIVANNALLLSNDAYGNFVVQHVLKL 214
Query: 209 GDLKYSEKICSLLKGKFEELSLLRCGSHLVEK 240
D + + I L G ELS + GS++VE+
Sbjct: 215 RDSRCTRNIADKLCGYCVELSFKKYGSYIVER 246
Score = 45 (20.9 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 253 KYGNFVIQQALRVT 266
+YGNFV+ +AL +T
Sbjct: 277 EYGNFVVCKALELT 290
>ASPGD|ASPL0000057098 [details] [associations]
symbol:AN10071 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BN001308 GO:GO:0003723
EnsemblFungi:CADANIAT00002391 OMA:HKFSSNV Uniprot:C8VU22
Length = 650
Score = 207 (77.9 bits), Expect = 2.2e-14, P = 2.2e-14
Identities = 58/212 (27%), Positives = 101/212 (47%)
Query: 33 LLAQPDYDIVLLGKTEGGSLFLQKMLS-GKDSTITYKIFEAVYKYPFDLMTDGYGCHLAR 91
+ A+ ++ L G+ QK+L D T + +A P L+ H R
Sbjct: 269 IFAETHSHVIELMTDPFGNYLCQKLLEYSNDEQRTVLVNKAA---P-QLVKIALNQHGTR 324
Query: 92 SMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMN 151
++QK+I+ + VI A +++ + VI KCL L +K++ +Y A
Sbjct: 325 ALQKMIEFISTEEQTQTVIDALKDHVVELVQDLNGNHVIQKCLNRLTAEKSQFIYDAVGA 384
Query: 152 HFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDL 211
+ TH GC L I+ G +R L++ I+ +A L +DP GNYVVQ++L L +
Sbjct: 385 QCVTVGTHRHGCCVLQRCIDHASGAQRARLIEQITENAFALVQDPFGNYVVQYILDLAEA 444
Query: 212 KYSEKICSLLKGKFEELSLLRCGSHLVEKYQR 243
+++E +C + +LS + S+++EK R
Sbjct: 445 RFTEPLCREFLSRIPKLSKHKFSSNVIEKCLR 476
>TAIR|locus:2138258 [details] [associations]
symbol:PUM11 "pumilio 11" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AL161513 eggNOG:COG5099 EMBL:AL161813 HOGENOM:HOG000124802
IPI:IPI00541594 PIR:A85089 RefSeq:NP_192624.2 UniGene:At.54217
ProteinModelPortal:Q9LDW3 SMR:Q9LDW3 EnsemblPlants:AT4G08840.1
GeneID:826455 KEGG:ath:AT4G08840 TAIR:At4g08840 InParanoid:Q9LDW3
OMA:MSISDER PhylomeDB:Q9LDW3 Genevestigator:Q9LDW3 Uniprot:Q9LDW3
Length = 556
Score = 202 (76.2 bits), Expect = 7.4e-14, P = 7.4e-14
Identities = 71/247 (28%), Positives = 114/247 (46%)
Query: 40 DIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKL 99
+++ LG G+ +QK++ + +I + P L+ + R +QKLI+
Sbjct: 281 NVIELGTDPFGNYLIQKLIEVCNEEQRTQILIRLTSKPGLLVKISINNYGTRVVQKLIET 340
Query: 100 LVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATH 159
+ ISLV SA F + + VI+ CL+ N+ + AA E+AT
Sbjct: 341 VTTKEQISLVKSALVPGFLSLFRELNGNHVILNCLKFFSPNDNKFILEAATKFCIEIATT 400
Query: 160 VRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSE-KIC 218
GC L ++ G + L+D IS ++ L++DP GNY+VQ+++ + K +
Sbjct: 401 RHGCCVLQRCVSYSVGEQHEKLVDEISRNSLLLAQDPFGNYLVQYII---EKKVGGVNVL 457
Query: 219 SLLKGKFEELSLLRCGSHLVEK---Y---QRPSIFTPC----------QHKYGNFVIQQA 262
L+G + +L+ + GSH+VEK Y R I Q Y N+VIQ A
Sbjct: 458 FELRGNYVKLATQKFGSHVVEKCLRYYPESRSQIVNELVSVLNFGYLLQDPYANYVIQCA 517
Query: 263 LRVTKGF 269
L TKGF
Sbjct: 518 LSKTKGF 524
>DICTYBASE|DDB_G0279557 [details] [associations]
symbol:DDB_G0279557 "pumilio RNA-binding
region-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0279557 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AAFI02000031 eggNOG:COG5099 RefSeq:XP_641698.1
ProteinModelPortal:Q54WL9 EnsemblProtists:DDB0305068 GeneID:8622107
KEGG:ddi:DDB_G0279557 InParanoid:Q54WL9 OMA:STHAANS Uniprot:Q54WL9
Length = 782
Score = 186 (70.5 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 62/206 (30%), Positives = 97/206 (47%)
Query: 85 YGCHL--ARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKE--ASSVIIKCLETLDEQ 140
+ CH+ +QKL++ L S++ S + K + SK+ + +I L+ +
Sbjct: 551 FACHVYGIHGIQKLLQYLSPDQVESIIASI---KGKVIQLSKDNKGNYLIQSFLKQFSPE 607
Query: 141 KNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNY 200
N+ + A M + E+ TH GC +N I+ + L+D I+ H+ L +D GNY
Sbjct: 608 VNQFVCDAIMGNIEEICTHKVGCTVVNRCIDNANPEQLEKLVDKITEHSLKLVQDQFGNY 667
Query: 201 VVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK---------YQ-------RP 244
VVQH+L YS K+ LK ELS+ + S+++EK Y+
Sbjct: 668 VVQHLLSKNKA-YSSKLIVSLKDNIAELSIQKFSSNVIEKCLQLADTPTYELIIKALTEA 726
Query: 245 SIFTPCQHKYGNFVIQQALRVTKGFQ 270
I + Q KY NFVIQ AL V+ Q
Sbjct: 727 DILSLLQDKYANFVIQTALDVSNDTQ 752
>TAIR|locus:2011360 [details] [associations]
symbol:PUM10 "pumilio 10" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM;IDA] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AC021198 eggNOG:COG5099 HSSP:Q14671 IPI:IPI00544215 PIR:F86479
RefSeq:NP_174813.1 UniGene:At.51962 ProteinModelPortal:Q9LP21
SMR:Q9LP21 PRIDE:Q9LP21 EnsemblPlants:AT1G35750.1 GeneID:840480
KEGG:ath:AT1G35750 TAIR:At1g35750 HOGENOM:HOG000124802
InParanoid:Q9LP21 OMA:GFEEMMA PhylomeDB:Q9LP21
Genevestigator:Q9LP21 Uniprot:Q9LP21
Length = 528
Score = 183 (69.5 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 82/275 (29%), Positives = 122/275 (44%)
Query: 14 IGIANLSTSIGPGTYGKNALLAQPDYD-IVLLGKTEGGSLFLQKMLSGKDSTITYKIFEA 72
IG L + GT + ++ D +V L G+ +QK+L D I
Sbjct: 226 IGCRALQKLVEEGTVLDSKVIFLEIIDHVVELSMDPLGNYIVQKLLVVSDEEQRTMIVSV 285
Query: 73 VYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIK 132
+ P +L+ + R +QK+IK + I+LV SA F ++ V+
Sbjct: 286 LTSKPRELIKICLNTNGTRVIQKMIKTVKTKQQIALVKSALEPGFLVLVNDSNGYHVLQS 345
Query: 133 CLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLN-NFINEMRGPRRGGLLDLISSHAEF 191
CLE L N+ + AA + +LATH GC L + IN + G + L+ IS +
Sbjct: 346 CLEFLVPNDNKFVVEAATEYCAQLATHQYGCYVLQCSLINTV-GLQHERLVAEISRDSLR 404
Query: 192 LSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFE--ELSLLRCGSHLVEKYQR------ 243
LS+DP GNYVVQ ++ D + S + LL + EL+ + SH++EK R
Sbjct: 405 LSQDPFGNYVVQCLI---DQQVSS-VNLLLPFRTHCIELATQKFSSHVIEKCLRKYPESR 460
Query: 244 ----------PSIFTPCQHKYGNFVIQQALRVTKG 268
P+ Q Y N+VIQ AL VTKG
Sbjct: 461 AEIVRELLSYPNFEQLLQDPYANYVIQTALSVTKG 495
>POMBASE|SPAC6G9.14 [details] [associations]
symbol:SPAC6G9.14 "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC6G9.14 GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 OrthoDB:EOG42NN7Z PIR:T39076
RefSeq:NP_594123.1 ProteinModelPortal:Q92359
EnsemblFungi:SPAC6G9.14.1 GeneID:2542056 KEGG:spo:SPAC6G9.14
NextBio:20803131 Uniprot:Q92359
Length = 681
Score = 156 (60.0 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 45/163 (27%), Positives = 82/163 (50%)
Query: 80 LMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASS--VIIKCLETL 137
L+ + H R++QK+I L+ IS +++A R ++ +K+ + VI KCL
Sbjct: 420 LVPISFNMHGTRALQKIIDLVSSPDQISCIVNAL--RPNVVLLTKDLNGNHVIQKCLNKF 477
Query: 138 DEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPS 197
++ + ++ A +++TH GC + + + L++ I HA L +D
Sbjct: 478 SQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQLVEHIVPHALTLVQDAF 537
Query: 198 GNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK 240
GNYV+Q+VL L + ++E I S K LS + S+++EK
Sbjct: 538 GNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEK 580
Score = 66 (28.3 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 21/93 (22%), Positives = 41/93 (44%)
Query: 4 GGRRPDLNRGIGIANLST---SIGPGTYGKNALLAQPDYDIVLLGKTEGGSLFLQKMLSG 60
G P G + +L + S+ A L+ + +I+ K + G +LQ++L
Sbjct: 308 GNPSPADTPGFNVPSLISDDPSVSSSLSSSVASLSLQNSNILSFCKDQHGCRYLQRLLEK 367
Query: 61 KDSTITYKIFEAVYKYPFDLMTDGYGCHLARSM 93
K+ + +F + Y LM D +G +L + +
Sbjct: 368 KNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKL 400
>SGD|S000002982 [details] [associations]
symbol:PUF4 "Member of the PUF protein family" species:4932
"Saccharomyces cerevisiae" [GO:0008104 "protein localization"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003729
"mRNA binding" evidence=ISS;IDA] [GO:0001308 "negative regulation
of chromatin silencing involved in replicative cell aging"
evidence=IGI;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IGI]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000002982 GO:GO:0005737 GO:GO:0008104
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941
GO:GO:0017148 GO:GO:0003729 GO:GO:0006351 EMBL:S58126 GO:GO:0000288
eggNOG:COG5099 GeneTree:ENSGT00390000017241 GO:GO:0001308
OrthoDB:EOG42NN7Z EMBL:S57889 EMBL:Z72536 PIR:S64016
RefSeq:NP_011501.1 PDB:3BWT PDB:3BX2 PDB:3BX3 PDB:4DZS PDBsum:3BWT
PDBsum:3BX2 PDBsum:3BX3 PDBsum:4DZS ProteinModelPortal:P25339
SMR:P25339 DIP:DIP-2638N IntAct:P25339 MINT:MINT-425380
STRING:P25339 PaxDb:P25339 PeptideAtlas:P25339 EnsemblFungi:YGL014W
GeneID:852870 KEGG:sce:YGL014W CYGD:YGL014w HOGENOM:HOG000115799
OMA:FRRQTFH EvolutionaryTrace:P25339 NextBio:972496
Genevestigator:P25339 GermOnline:YGL014W Uniprot:P25339
Length = 888
Score = 179 (68.1 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 62/228 (27%), Positives = 113/228 (49%)
Query: 26 GTYGKNALLAQP-DYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDG 84
G+ +A+ + DY + L+ + G L +QK+L ++ T +I P +
Sbjct: 589 GSKAADAIFEETKDYTVELMTDSFGNYL-IQKLL--EEVTTEQRIVLTKISSPH-FVEIS 644
Query: 85 YGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASS--VIIKCLETLDEQKN 142
H R++QKLI+ + +V+ + R + + SK+ + VI KCL+ L +
Sbjct: 645 LNPHGTRALQKLIECIKTDEEAQIVVDSL-RPYT-VQLSKDLNGNHVIQKCLQRLKPENF 702
Query: 143 EVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVV 202
+ ++ A + ++ATH GC L ++ + L D + + + L+ DP GNYVV
Sbjct: 703 QFIFDAISDSCIDIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVV 762
Query: 203 QHVLGLGDLK----YSEKICSLLKGKFEELSLLRCGSHLVEKYQRPSI 246
Q+++ K Y+ KI LLK + ELS+ + GS+++EK + +I
Sbjct: 763 QYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHKFGSNVIEKILKTAI 810
Score = 124 (48.7 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 49/211 (23%), Positives = 95/211 (45%)
Query: 31 NALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLA 90
+A+L Q I L K + G FLQK L S IFE Y +LMTD +G +L
Sbjct: 558 DAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYL- 616
Query: 91 RSMQKLIKLLVGSPCISLV-ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAA 149
+QKL++ + I L IS+ + F ++ + + + K +E + + + + +
Sbjct: 617 --IQKLLEEVTTEQRIVLTKISSPH--FVEISLNPHGTRALQKLIECIKTDEEAQIVVDS 672
Query: 150 MNHFR-ELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGL 208
+ + +L+ + G + + ++ + D IS ++ G V+Q L
Sbjct: 673 LRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDH 732
Query: 209 GDLKYSEKICSLLKGKFEELSLLRCGSHLVE 239
G + + +C L ++L+L G+++V+
Sbjct: 733 GTTEQCDNLCDKLLALVDKLTLDPFGNYVVQ 763
Score = 42 (19.8 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 7/13 (53%), Positives = 11/13 (84%)
Query: 254 YGNFVIQQALRVT 266
YGN+V+Q AL ++
Sbjct: 836 YGNYVLQTALDIS 848
Score = 39 (18.8 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 235 SHLVEKYQRPSIFTPCQHKYGNFVIQQALR 264
+H + +P HK+G+ VI++ L+
Sbjct: 778 THKIVHLLKPRAIELSIHKFGSNVIEKILK 807
>POMBASE|SPAC4G8.03c [details] [associations]
symbol:SPAC4G8.03c "RNA-binding protein (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO;IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC4G8.03c GO:GO:0005794 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 PIR:T38847 RefSeq:NP_593062.1
ProteinModelPortal:Q09829 EnsemblFungi:SPAC4G8.03c.1 GeneID:2543684
KEGG:spo:SPAC4G8.03c OrthoDB:EOG4QJVZ9 NextBio:20804690
Uniprot:Q09829
Length = 780
Score = 172 (65.6 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 56/212 (26%), Positives = 94/212 (44%)
Query: 31 NALLAQPDY--DIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCH 88
NA L P+ +V L G+ QK+ + + + D+ ++ YG
Sbjct: 491 NASLFFPEIRQSVVQLMIDPFGNYMCQKLFVYASREQKLSMLNGIGEGIVDICSNLYG-- 548
Query: 89 LARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLA 148
RSMQ +I L + ISL++ + + V+ KC+ +K E L+L+
Sbjct: 549 -TRSMQNIIDKLTSNEQISLLLKIIIPSLTTLACDNNGTHVLQKCIAKFPPEKLEPLFLS 607
Query: 149 AMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGL 208
+ LAT+ GC L ++ G + L++ I L ++ GNY+VQHVL L
Sbjct: 608 MEENLITLATNRHGCCILQRCLDRTNGDIQERLVNSIIKSCLLLVQNAYGNYLVQHVLEL 667
Query: 209 GDLKYSEKICSLLKGKFEELSLLRCGSHLVEK 240
Y+E+I G +LSL + S+ +E+
Sbjct: 668 NIQPYTERIIEKFFGNICKLSLQKFSSNAIEQ 699
>DICTYBASE|DDB_G0289987 [details] [associations]
symbol:DDB_G0289987 "Pumilio homology domain family
member 4" species:44689 "Dictyostelium discoideum" [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000571 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50103 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 dictyBase:DDB_G0289987 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0008270 GO:GO:0003723
EMBL:AAFI02000150 eggNOG:COG5099 RefSeq:XP_635942.1
ProteinModelPortal:Q54GR0 EnsemblProtists:DDB0188671 GeneID:8627424
KEGG:ddi:DDB_G0289987 InParanoid:Q54GR0 OMA:IVRISMN Uniprot:Q54GR0
Length = 1036
Score = 157 (60.3 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 56/205 (27%), Positives = 92/205 (44%)
Query: 38 DYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLI 97
DY + L+ G L QK+L + I E K D++ H R++QK+I
Sbjct: 750 DYMLELMTDPFGNYL-CQKLLEHCNDRQRLTIIE---KVGTDIVRISMNMHGTRAVQKMI 805
Query: 98 KLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFR--E 155
+ L I L+ + ++ + VI KCL L Q N+ +Y A +
Sbjct: 806 EYLTTPEQIQLIKRSLKDSVVPLIQDLNGNHVIQKCLNKLSPQDNQFIYDAVSSDGSCIA 865
Query: 156 LATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSE 215
+ATH GC L I+ ++ L+ + +++ L +DP GNYVVQ+VL L +
Sbjct: 866 VATHRHGCCVLQRCIDHASESQKLQLIQEVIANSLVLVQDPYGNYVVQYVLDLPFQGLAT 925
Query: 216 KICSLLKGKFEELSLLRCGSHLVEK 240
++ G L+ + S++VEK
Sbjct: 926 EMAKRFVGHVPILATQKFSSNVVEK 950
Score = 46 (21.3 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 251 QHKYGNFVIQQALRVTKGFQMTE 273
Q Y N+VIQ +L +++ Q T+
Sbjct: 978 QDPYANYVIQTSLTISEPHQHTK 1000
>TAIR|locus:2043182 [details] [associations]
symbol:PUM1 "pumilio 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
IPI:IPI00536716 PIR:F84693 RefSeq:NP_180483.1 UniGene:At.38509
ProteinModelPortal:Q9ZW07 SMR:Q9ZW07 STRING:Q9ZW07 PaxDb:Q9ZW07
PRIDE:Q9ZW07 EnsemblPlants:AT2G29200.1 GeneID:817469
KEGG:ath:AT2G29200 TAIR:At2g29200 HOGENOM:HOG000238460
InParanoid:Q9ZW07 OMA:DQAHKAT PhylomeDB:Q9ZW07
ProtClustDB:CLSN2717398 Genevestigator:Q9ZW07 InterPro:IPR012940
Pfam:PF07990 Uniprot:Q9ZW07
Length = 968
Score = 156 (60.0 bits), Expect = 4.5e-08, P = 4.5e-08
Identities = 50/192 (26%), Positives = 85/192 (44%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK ++ E ++ + L YGC R +QK I+++ I +V
Sbjct: 680 GNYVIQKFFEHGLPPQRRELAEKLFDHVLPLSLQMYGC---RVIQKAIEVVDLDQKIKMV 736
Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
+ + + + V+ KC+E + E+ E + H L+TH GC +
Sbjct: 737 KELDGHVMRCVR-DQNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRV 795
Query: 170 INEMRGP-RRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEEL 228
+ P + +++ I S L++D GNYVVQHVL G I L GK ++
Sbjct: 796 LEHCHDPDTQSKVMEEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQM 855
Query: 229 SLLRCGSHLVEK 240
S + S++VEK
Sbjct: 856 SQQKFASNVVEK 867
>TAIR|locus:2043047 [details] [associations]
symbol:PUM3 "pumilio 3" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005886 GO:GO:0005737
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
ProtClustDB:CLSN2717398 InterPro:IPR012940 Pfam:PF07990
IPI:IPI00542656 PIR:A84693 RefSeq:NP_180478.1 UniGene:At.46280
ProteinModelPortal:Q9ZW02 SMR:Q9ZW02 PaxDb:Q9ZW02 PRIDE:Q9ZW02
EnsemblPlants:AT2G29140.1 GeneID:817463 KEGG:ath:AT2G29140
TAIR:At2g29140 InParanoid:Q9ZW02 OMA:MYENASA PhylomeDB:Q9ZW02
Genevestigator:Q9ZW02 Uniprot:Q9ZW02
Length = 964
Score = 150 (57.9 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 45/157 (28%), Positives = 73/157 (46%)
Query: 85 YGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEV 144
YGC R +QK I+++ I +V + + + + V+ KC+E + E+ E
Sbjct: 711 YGC---RVIQKAIEVVDLDQKIQMVKELDGHVMRCVR-DQNGNHVVQKCIECVPEENIEF 766
Query: 145 LYLAAMNHFRELATHVRGCVSLNNFINEMRGP-RRGGLLDLISSHAEFLSKDPSGNYVVQ 203
+ H L+TH GC + + P + +++ I S L++D GNYVVQ
Sbjct: 767 IISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQSKVMEEILSTVSMLTQDQYGNYVVQ 826
Query: 204 HVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK 240
HVL G I L GK ++S + S++VEK
Sbjct: 827 HVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEK 863
>TAIR|locus:2043187 [details] [associations]
symbol:PUM2 "pumilio 2" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS;IDA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0003729 "mRNA binding"
evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 GO:GO:0005829 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003730 EMBL:AC004561 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 ProtClustDB:CLSN2717398 InterPro:IPR012940
Pfam:PF07990 EMBL:AY096653 EMBL:AK226635 IPI:IPI00539996 PIR:E84693
RefSeq:NP_001189630.1 RefSeq:NP_180482.1 UniGene:At.28148
UniGene:At.48528 ProteinModelPortal:Q9ZW06 SMR:Q9ZW06 STRING:Q9ZW06
PaxDb:Q9ZW06 PRIDE:Q9ZW06 ProMEX:Q9ZW06 EnsemblPlants:AT2G29190.1
EnsemblPlants:AT2G29190.2 GeneID:817468 KEGG:ath:AT2G29190
TAIR:At2g29190 InParanoid:Q9ZW06 OMA:LAANCED PhylomeDB:Q9ZW06
Genevestigator:Q9ZW06 Uniprot:Q9ZW06
Length = 972
Score = 150 (57.9 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 51/189 (26%), Positives = 85/189 (44%)
Query: 53 FLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISA 112
F + L + + K+F+ V P L YGC R +QK I+++ I +V
Sbjct: 691 FFEHGLPPQRRELADKLFDNVL--PLSLQM--YGC---RVIQKAIEVVDLDQKIKMVKEL 743
Query: 113 AYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINE 172
+ + + + V+ KC+E + E+ E + + L+TH GC + +
Sbjct: 744 DGHVMRCVR-DQNGNHVVQKCIECVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRVLEH 802
Query: 173 MRGP-RRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLL 231
P + ++D I S L++D GNYV+QHVL G I L GK ++S
Sbjct: 803 CHDPDTQSKVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQMSQQ 862
Query: 232 RCGSHLVEK 240
+ S++VEK
Sbjct: 863 KFASNVVEK 871
>RGD|1311024 [details] [associations]
symbol:Pum2 "pumilio homolog 2 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 RGD:1311024
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
IPI:IPI00950922 Ensembl:ENSRNOT00000064843 ArrayExpress:D4A0R8
Uniprot:D4A0R8
Length = 904
Score = 151 (58.2 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 44/157 (28%), Positives = 73/157 (46%)
Query: 85 YGCHLARSMQKLIKLLVGSP-CISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNE 143
YGC R +QK ++ + IS ++ + + + V+ KC+E + Q +
Sbjct: 649 YGC---RVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQ 705
Query: 144 VLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQ 203
+ A L+TH GC + + + +L+ + H E L +D GNYV+Q
Sbjct: 706 FIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQ 765
Query: 204 HVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK 240
HVL G + KI S ++GK LS + S++VEK
Sbjct: 766 HVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEK 802
Score = 40 (19.1 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTKGFQ 270
+++T + +Y N+V+Q+ + + + Q
Sbjct: 829 ALYTMMKDQYANYVVQKMIDMAEPAQ 854
>UNIPROTKB|Q8TB72 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 EMBL:CH471053 GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 HOGENOM:HOG000238461
HOVERGEN:HBG049462 EMBL:AF315591 EMBL:D87078 EMBL:AC007041
EMBL:AK093847 EMBL:BC024218 EMBL:BC112046 EMBL:BC112048
EMBL:AF272350 IPI:IPI00022184 IPI:IPI00398749 IPI:IPI00398750
RefSeq:NP_056132.1 UniGene:Hs.467824 PDB:3Q0Q PDB:3Q0R PDB:3Q0S
PDBsum:3Q0Q PDBsum:3Q0R PDBsum:3Q0S ProteinModelPortal:Q8TB72
SMR:Q8TB72 IntAct:Q8TB72 MINT:MINT-254513 STRING:Q8TB72
PhosphoSite:Q8TB72 DMDM:41688714 PaxDb:Q8TB72 PRIDE:Q8TB72
Ensembl:ENST00000319801 Ensembl:ENST00000338086
Ensembl:ENST00000361078 Ensembl:ENST00000403432
Ensembl:ENST00000440577 GeneID:23369 KEGG:hsa:23369 UCSC:uc002rds.1
CTD:23369 GeneCards:GC02M020448 HGNC:HGNC:14958 HPA:HPA030316
MIM:607205 neXtProt:NX_Q8TB72 PharmGKB:PA34043 InParanoid:Q8TB72
OMA:HITSIPR PhylomeDB:Q8TB72 ChiTaRS:PUM2 EvolutionaryTrace:Q8TB72
GenomeRNAi:23369 NextBio:45440 ArrayExpress:Q8TB72 Bgee:Q8TB72
CleanEx:HS_PUM2 Genevestigator:Q8TB72 GermOnline:ENSG00000055917
Uniprot:Q8TB72
Length = 1066
Score = 151 (58.2 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 44/157 (28%), Positives = 73/157 (46%)
Query: 85 YGCHLARSMQKLIKLLVGSP-CISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNE 143
YGC R +QK ++ + IS ++ + + + V+ KC+E + Q +
Sbjct: 811 YGC---RVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQ 867
Query: 144 VLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQ 203
+ A L+TH GC + + + +L+ + H E L +D GNYV+Q
Sbjct: 868 FIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQ 927
Query: 204 HVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK 240
HVL G + KI S ++GK LS + S++VEK
Sbjct: 928 HVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEK 964
Score = 40 (19.1 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTKGFQ 270
+++T + +Y N+V+Q+ + + + Q
Sbjct: 991 ALYTMMKDQYANYVVQKMIDMAEPAQ 1016
>MGI|MGI:1931751 [details] [associations]
symbol:Pum2 "pumilio 2 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0030425
"dendrite" evidence=ISO] [GO:0034063 "stress granule assembly"
evidence=ISO;IDA] [GO:0043025 "neuronal cell body" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931751 GO:GO:0048471
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0043025 GO:GO:0030425 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HOGENOM:HOG000238461 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP CTD:23369
ChiTaRS:PUM2 EMBL:AY027917 EMBL:AF315590 EMBL:AK122225
EMBL:BC013765 EMBL:BC041773 IPI:IPI00112203 IPI:IPI00400191
IPI:IPI00400192 RefSeq:NP_001153691.1 RefSeq:NP_001153694.1
RefSeq:NP_109648.2 UniGene:Mm.341243 PDB:3GVO PDB:3GVT PDBsum:3GVO
PDBsum:3GVT ProteinModelPortal:Q80U58 SMR:Q80U58 IntAct:Q80U58
STRING:Q80U58 PhosphoSite:Q80U58 PaxDb:Q80U58 PRIDE:Q80U58
Ensembl:ENSMUST00000163569 Ensembl:ENSMUST00000168361
Ensembl:ENSMUST00000169089 Ensembl:ENSMUST00000178015 GeneID:80913
KEGG:mmu:80913 UCSC:uc007mzw.2 UCSC:uc007mzy.2 UCSC:uc007naa.2
InParanoid:Q80U58 OMA:LFDYSSQ EvolutionaryTrace:Q80U58
NextBio:350290 Bgee:Q80U58 CleanEx:MM_PUM2 Genevestigator:Q80U58
GermOnline:ENSMUSG00000020594 Uniprot:Q80U58
Length = 1066
Score = 151 (58.2 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 44/157 (28%), Positives = 73/157 (46%)
Query: 85 YGCHLARSMQKLIKLLVGSP-CISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNE 143
YGC R +QK ++ + IS ++ + + + V+ KC+E + Q +
Sbjct: 811 YGC---RVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQ 867
Query: 144 VLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQ 203
+ A L+TH GC + + + +L+ + H E L +D GNYV+Q
Sbjct: 868 FIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQ 927
Query: 204 HVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK 240
HVL G + KI S ++GK LS + S++VEK
Sbjct: 928 HVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEK 964
Score = 40 (19.1 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTKGFQ 270
+++T + +Y N+V+Q+ + + + Q
Sbjct: 991 ALYTMMKDQYANYVVQKMIDMAEPAQ 1016
>UNIPROTKB|B4E2B6 [details] [associations]
symbol:PUM2 "Pumilio homolog 2" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 GO:GO:0010494
GO:GO:0034063 HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AC007041
UniGene:Hs.467824 HGNC:HGNC:14958 ChiTaRS:PUM2 EMBL:AK304198
IPI:IPI01009448 SMR:B4E2B6 STRING:B4E2B6 Ensembl:ENST00000536417
UCSC:uc010yjz.1 Uniprot:B4E2B6
Length = 1008
Score = 149 (57.5 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 44/156 (28%), Positives = 73/156 (46%)
Query: 85 YGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEV 144
YGC R +QK ++ + S S ++ + + + V+ KC+E + Q +
Sbjct: 755 YGC---RVIQKALES-ISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF 810
Query: 145 LYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQH 204
+ A L+TH GC + + + +L+ + H E L +D GNYV+QH
Sbjct: 811 IIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQH 870
Query: 205 VLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK 240
VL G + KI S ++GK LS + S++VEK
Sbjct: 871 VLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEK 906
Score = 40 (19.1 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTKGFQ 270
+++T + +Y N+V+Q+ + + + Q
Sbjct: 933 ALYTMMKDQYANYVVQKMIDMAEPAQ 958
>UNIPROTKB|H0YDK8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000498419 Uniprot:H0YDK8
Length = 900
Score = 146 (56.5 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 49/195 (25%), Positives = 83/195 (42%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + E + + L YGC R +QK ++ + P V
Sbjct: 610 GNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGC---RVIQKALEFI---PSDQQV 663
Query: 110 ISAAYRRFKDMMFS----KEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVS 165
I+ R + + + V+ KC+E + Q + + A L+TH GC
Sbjct: 664 INEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 723
Query: 166 LNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKF 225
+ + + +L+ + H E L +D GNYV+QHVL G + KI + ++G
Sbjct: 724 IQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNV 783
Query: 226 EELSLLRCGSHLVEK 240
LS + S++VEK
Sbjct: 784 LVLSQHKFASNVVEK 798
Score = 42 (19.8 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTK 267
+++T + +Y N+V+Q+ + V +
Sbjct: 825 ALYTMMKDQYANYVVQKMIDVAE 847
>UNIPROTKB|F1STL2 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:CU928875
Ensembl:ENSSSCT00000003986 OMA:ANHVVEF Uniprot:F1STL2
Length = 735
Score = 143 (55.4 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 47/191 (24%), Positives = 81/191 (42%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + E + + L YGC R +QK ++ + +V
Sbjct: 447 GNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGC---RVIQKALEFIPSDQQNEMV 503
Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
K + + + V+ KC+E + Q + + A L+TH GC +
Sbjct: 504 RELDGHVLKCVK-DQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRI 562
Query: 170 INEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELS 229
+ + +L+ + H E L +D GNYV+QHVL G + KI + ++G LS
Sbjct: 563 LEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLS 622
Query: 230 LLRCGSHLVEK 240
+ S++VEK
Sbjct: 623 QHKFASNVVEK 633
Score = 43 (20.2 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTKGFQ 270
+++T + +Y N+V+Q+ + V + Q
Sbjct: 660 ALYTMMKDQYANYVVQKMIDVAEPAQ 685
>UNIPROTKB|E2RT57 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 CTD:23369 OMA:LFDYSSQ
EMBL:AAEX03010760 RefSeq:XP_849088.1 Ensembl:ENSCAFT00000006180
GeneID:607618 KEGG:cfa:607618 Uniprot:E2RT57
Length = 1063
Score = 149 (57.5 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 44/156 (28%), Positives = 73/156 (46%)
Query: 85 YGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEV 144
YGC R +QK ++ + S S ++ + + + V+ KC+E + Q +
Sbjct: 810 YGC---RVIQKALES-ISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF 865
Query: 145 LYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQH 204
+ A L+TH GC + + + +L+ + H E L +D GNYV+QH
Sbjct: 866 IIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQH 925
Query: 205 VLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK 240
VL G + KI S ++GK LS + S++VEK
Sbjct: 926 VLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEK 961
Score = 40 (19.1 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTKGFQ 270
+++T + +Y N+V+Q+ + + + Q
Sbjct: 988 ALYTMMKDQYANYVVQKMIDMAEPAQ 1013
>UNIPROTKB|F1SCU6 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AEMK01186664
EMBL:CU466989 Ensembl:ENSSSCT00000009411 Uniprot:F1SCU6
Length = 1064
Score = 149 (57.5 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 44/156 (28%), Positives = 73/156 (46%)
Query: 85 YGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEV 144
YGC R +QK ++ + S S ++ + + + V+ KC+E + Q +
Sbjct: 811 YGC---RVIQKALES-ISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF 866
Query: 145 LYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQH 204
+ A L+TH GC + + + +L+ + H E L +D GNYV+QH
Sbjct: 867 IIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQH 926
Query: 205 VLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK 240
VL G + KI S ++GK LS + S++VEK
Sbjct: 927 VLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEK 962
Score = 40 (19.1 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTKGFQ 270
+++T + +Y N+V+Q+ + + + Q
Sbjct: 989 ALYTMMKDQYANYVVQKMIDMAEPAQ 1014
>UNIPROTKB|F1N2B8 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048471 "perinuclear region of cytoplasm" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:DAAA02031737
IPI:IPI00703675 Ensembl:ENSBTAT00000014813 Uniprot:F1N2B8
Length = 1069
Score = 149 (57.5 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 44/156 (28%), Positives = 73/156 (46%)
Query: 85 YGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEV 144
YGC R +QK ++ + S S ++ + + + V+ KC+E + Q +
Sbjct: 816 YGC---RVIQKALES-ISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQF 871
Query: 145 LYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQH 204
+ A L+TH GC + + + +L+ + H E L +D GNYV+QH
Sbjct: 872 IIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQH 931
Query: 205 VLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK 240
VL G + KI S ++GK LS + S++VEK
Sbjct: 932 VLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEK 967
Score = 40 (19.1 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTKGFQ 270
+++T + +Y N+V+Q+ + + + Q
Sbjct: 994 ALYTMMKDQYANYVVQKMIDMAEPAQ 1019
>DICTYBASE|DDB_G0279735 [details] [associations]
symbol:pufA "RNA binding protein" species:44689
"Dictyostelium discoideum" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 dictyBase:DDB_G0279735
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CM000152_GR GO:GO:0003723 EMBL:AAFI02000032
OMA:FNDSANG RefSeq:XP_641551.1 EnsemblProtists:DDB0233053
GeneID:8622225 KEGG:ddi:DDB_G0279735 InParanoid:Q54WA7
ProtClustDB:CLSZ2846814 Uniprot:Q54WA7
Length = 785
Score = 144 (55.7 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 49/191 (25%), Positives = 82/191 (42%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ LQK + + + + + L YGC R +QK I+ + I L+
Sbjct: 509 GNYVLQKFFEHGTTEQKRILADKLSGHILSLTLQMYGC---RVIQKAIESIELDKQI-LL 564
Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
I + + + VI KC+E + + + + H +LATH GC +
Sbjct: 565 IGELNGHIVQCVTDQNGNHVIQKCIEKIPTHLIQFIIDSFHGHIYQLATHPYGCRVIQRI 624
Query: 170 INEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELS 229
+ + +LD + A L +D GNYV+QHVL G + I L+G+ LS
Sbjct: 625 LEHCAEKQVAPILDELMRCAVSLVQDQYGNYVIQHVLENGTPRDKSAIVCKLQGQIYNLS 684
Query: 230 LLRCGSHLVEK 240
+ S+++EK
Sbjct: 685 QHKFASNVIEK 695
>UNIPROTKB|E7EWT3 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00939543 ProteinModelPortal:E7EWT3 SMR:E7EWT3
Ensembl:ENST00000423018 UCSC:uc010oga.1 ArrayExpress:E7EWT3
Bgee:E7EWT3 Uniprot:E7EWT3
Length = 1044
Score = 146 (56.5 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 49/195 (25%), Positives = 83/195 (42%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + E + + L YGC R +QK ++ + P V
Sbjct: 754 GNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGC---RVIQKALEFI---PSDQQV 807
Query: 110 ISAAYRRFKDMMFS----KEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVS 165
I+ R + + + V+ KC+E + Q + + A L+TH GC
Sbjct: 808 INEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 867
Query: 166 LNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKF 225
+ + + +L+ + H E L +D GNYV+QHVL G + KI + ++G
Sbjct: 868 IQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNV 927
Query: 226 EELSLLRCGSHLVEK 240
LS + S++VEK
Sbjct: 928 LVLSQHKFASNVVEK 942
Score = 42 (19.8 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTK 267
+++T + +Y N+V+Q+ + V +
Sbjct: 969 ALYTMMKDQYANYVVQKMIDVAE 991
>UNIPROTKB|F6XHY4 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 GeneTree:ENSGT00390000017241
OMA:RHVVGVK Ensembl:ENSCAFT00000017823 EMBL:AAEX03001673
Uniprot:F6XHY4
Length = 1162
Score = 146 (56.5 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 49/195 (25%), Positives = 83/195 (42%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + E + + L YGC R +QK ++ + P V
Sbjct: 872 GNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGC---RVIQKALEFI---PSDQQV 925
Query: 110 ISAAYRRFKDMMFS----KEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVS 165
I+ R + + + V+ KC+E + Q + + A L+TH GC
Sbjct: 926 INEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 985
Query: 166 LNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKF 225
+ + + +L+ + H E L +D GNYV+QHVL G + KI + ++G
Sbjct: 986 IQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNV 1045
Query: 226 EELSLLRCGSHLVEK 240
LS + S++VEK
Sbjct: 1046 LVLSQHKFASNVVEK 1060
Score = 43 (20.2 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTKGFQ 270
+++T + +Y N+V+Q+ + V + Q
Sbjct: 1087 ALYTMMKDQYANYVVQKMIDVAEPAQ 1112
>MGI|MGI:1931749 [details] [associations]
symbol:Pum1 "pumilio 1 (Drosophila)" species:10090 "Mus
musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 MGI:MGI:1931749
GO:GO:0005737 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 eggNOG:COG5099
GeneTree:ENSGT00390000017241 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK OrthoDB:EOG4P8FHP ChiTaRS:PUM1
EMBL:AF321909 EMBL:AK122205 EMBL:AK052145 EMBL:BC048174
EMBL:BC050747 IPI:IPI00330262 IPI:IPI00400349 IPI:IPI00400350
IPI:IPI00400351 RefSeq:NP_001153075.1 RefSeq:NP_001153076.1
RefSeq:NP_001153077.1 RefSeq:NP_001153078.1 RefSeq:NP_109647.2
UniGene:Mm.440206 ProteinModelPortal:Q80U78 SMR:Q80U78
IntAct:Q80U78 STRING:Q80U78 PhosphoSite:Q80U78 PaxDb:Q80U78
PRIDE:Q80U78 Ensembl:ENSMUST00000030315 Ensembl:ENSMUST00000097862
Ensembl:ENSMUST00000097864 GeneID:80912 KEGG:mmu:80912
UCSC:uc008uzl.2 InParanoid:Q80U78 NextBio:350286 Bgee:Q80U78
CleanEx:MM_PUM1 Genevestigator:Q80U78 Uniprot:Q80U78
Length = 1189
Score = 147 (56.8 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 49/195 (25%), Positives = 83/195 (42%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + E + + L YGC R +QK ++ + P V
Sbjct: 899 GNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGC---RVIQKALEFI---PSDQQV 952
Query: 110 ISAAYRRFKDMMFS----KEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVS 165
I+ R + + + V+ KC+E + Q + + A L+TH GC
Sbjct: 953 INEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 1012
Query: 166 LNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKF 225
+ + + +L+ + H E L +D GNYV+QHVL G + KI + ++G
Sbjct: 1013 IQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNV 1072
Query: 226 EELSLLRCGSHLVEK 240
LS + S++VEK
Sbjct: 1073 LVLSQHKFASNVVEK 1087
Score = 42 (19.8 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTK 267
+++T + +Y N+V+Q+ + V +
Sbjct: 1114 ALYTMMKDQYANYVVQKMIDVAE 1136
>UNIPROTKB|E2QVA9 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 GO:GO:0003723 CTD:9698 RefSeq:XP_852168.1
Ensembl:ENSCAFT00000017823 GeneID:478158 KEGG:cfa:478158
NextBio:20853526 Uniprot:E2QVA9
Length = 1224
Score = 146 (56.5 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 49/195 (25%), Positives = 83/195 (42%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + E + + L YGC R +QK ++ + P V
Sbjct: 934 GNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGC---RVIQKALEFI---PSDQQV 987
Query: 110 ISAAYRRFKDMMFS----KEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVS 165
I+ R + + + V+ KC+E + Q + + A L+TH GC
Sbjct: 988 INEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 1047
Query: 166 LNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKF 225
+ + + +L+ + H E L +D GNYV+QHVL G + KI + ++G
Sbjct: 1048 IQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNV 1107
Query: 226 EELSLLRCGSHLVEK 240
LS + S++VEK
Sbjct: 1108 LVLSQHKFASNVVEK 1122
Score = 43 (20.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTKGFQ 270
+++T + +Y N+V+Q+ + V + Q
Sbjct: 1149 ALYTMMKDQYANYVVQKMIDVAEPAQ 1174
>RGD|1307190 [details] [associations]
symbol:Pum1 "pumilio homolog 1 (Drosophila)" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 RGD:1307190 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723 IPI:IPI00776810
Ensembl:ENSRNOT00000056233 UCSC:RGD:1307190 ArrayExpress:D3ZHQ4
Uniprot:D3ZHQ4
Length = 944
Score = 144 (55.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 47/191 (24%), Positives = 81/191 (42%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + E + + L YGC R +QK ++ + +V
Sbjct: 656 GNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGC---RVIQKALEFIPSDQQNEMV 712
Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
K + + + V+ KC+E + Q + + A L+TH GC +
Sbjct: 713 RELDGHVLKCVK-DQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRI 771
Query: 170 INEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELS 229
+ + +L+ + H E L +D GNYV+QHVL G + KI + ++G LS
Sbjct: 772 LEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLS 831
Query: 230 LLRCGSHLVEK 240
+ S++VEK
Sbjct: 832 QHKFASNVVEK 842
Score = 42 (19.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTK 267
+++T + +Y N+V+Q+ + V +
Sbjct: 869 ALYTMMKDQYANYVVQKMIDVAE 891
>UNIPROTKB|E9PCJ0 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 CTD:9698 EMBL:AL356320 EMBL:AL445235
RefSeq:NP_001018494.1 UniGene:Hs.281707 DNASU:9698 GeneID:9698
KEGG:hsa:9698 HGNC:HGNC:14957 ChiTaRS:PUM1 GenomeRNAi:9698
NextBio:36439 IPI:IPI00941275 ProteinModelPortal:E9PCJ0 SMR:E9PCJ0
Ensembl:ENST00000426105 UCSC:uc001bsh.1 ArrayExpress:E9PCJ0
Bgee:E9PCJ0 Uniprot:E9PCJ0
Length = 1188
Score = 146 (56.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 49/195 (25%), Positives = 83/195 (42%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + E + + L YGC R +QK ++ + P V
Sbjct: 898 GNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGC---RVIQKALEFI---PSDQQV 951
Query: 110 ISAAYRRFKDMMFS----KEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVS 165
I+ R + + + V+ KC+E + Q + + A L+TH GC
Sbjct: 952 INEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 1011
Query: 166 LNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKF 225
+ + + +L+ + H E L +D GNYV+QHVL G + KI + ++G
Sbjct: 1012 IQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNV 1071
Query: 226 EELSLLRCGSHLVEK 240
LS + S++VEK
Sbjct: 1072 LVLSQHKFASNVVEK 1086
Score = 42 (19.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTK 267
+++T + +Y N+V+Q+ + V +
Sbjct: 1113 ALYTMMKDQYANYVVQKMIDVAE 1135
>UNIPROTKB|Q5T1Z4 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461 HOVERGEN:HBG049462
OrthoDB:EOG4P8FHP EMBL:AL356320 EMBL:AL445235 UniGene:Hs.281707
HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00646054 SMR:Q5T1Z4
STRING:Q5T1Z4 Ensembl:ENST00000373747 UCSC:uc001bsf.1
Uniprot:Q5T1Z4
Length = 1189
Score = 146 (56.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 49/195 (25%), Positives = 83/195 (42%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + E + + L YGC R +QK ++ + P V
Sbjct: 899 GNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGC---RVIQKALEFI---PSDQQV 952
Query: 110 ISAAYRRFKDMMFS----KEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVS 165
I+ R + + + V+ KC+E + Q + + A L+TH GC
Sbjct: 953 INEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 1012
Query: 166 LNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKF 225
+ + + +L+ + H E L +D GNYV+QHVL G + KI + ++G
Sbjct: 1013 IQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNV 1072
Query: 226 EELSLLRCGSHLVEK 240
LS + S++VEK
Sbjct: 1073 LVLSQHKFASNVVEK 1087
Score = 42 (19.8 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTK 267
+++T + +Y N+V+Q+ + V +
Sbjct: 1114 ALYTMMKDQYANYVVQKMIDVAE 1136
>UNIPROTKB|Q5T1Z8 [details] [associations]
symbol:PUM1 "Pumilio homolog 1 (Drosophila), isoform CRA_c"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OMA:RHVVGVK EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 IPI:IPI00032355
SMR:Q5T1Z8 STRING:Q5T1Z8 Ensembl:ENST00000373741 UCSC:uc001bsk.1
Uniprot:Q5T1Z8
Length = 1224
Score = 146 (56.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 49/195 (25%), Positives = 83/195 (42%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + E + + L YGC R +QK ++ + P V
Sbjct: 934 GNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGC---RVIQKALEFI---PSDQQV 987
Query: 110 ISAAYRRFKDMMFS----KEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVS 165
I+ R + + + V+ KC+E + Q + + A L+TH GC
Sbjct: 988 INEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 1047
Query: 166 LNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKF 225
+ + + +L+ + H E L +D GNYV+QHVL G + KI + ++G
Sbjct: 1048 IQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNV 1107
Query: 226 EELSLLRCGSHLVEK 240
LS + S++VEK
Sbjct: 1108 LVLSQHKFASNVVEK 1122
Score = 42 (19.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTK 267
+++T + +Y N+V+Q+ + V +
Sbjct: 1149 ALYTMMKDQYANYVVQKMIDVAE 1171
>UNIPROTKB|E9PR38 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 IPI:IPI00909786 ProteinModelPortal:E9PR38 SMR:E9PR38
Ensembl:ENST00000424085 ArrayExpress:E9PR38 Bgee:E9PR38
Uniprot:E9PR38
Length = 944
Score = 143 (55.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 47/191 (24%), Positives = 81/191 (42%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + E + + L YGC R +QK ++ + +V
Sbjct: 656 GNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGC---RVIQKALEFIPSDQQNEMV 712
Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
K + + + V+ KC+E + Q + + A L+TH GC +
Sbjct: 713 RELDGHVLKCVK-DQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRI 771
Query: 170 INEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELS 229
+ + +L+ + H E L +D GNYV+QHVL G + KI + ++G LS
Sbjct: 772 LEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLS 831
Query: 230 LLRCGSHLVEK 240
+ S++VEK
Sbjct: 832 QHKFASNVVEK 842
Score = 42 (19.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTK 267
+++T + +Y N+V+Q+ + V +
Sbjct: 869 ALYTMMKDQYANYVVQKMIDVAE 891
>UNIPROTKB|Q2VB19 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005737
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 eggNOG:COG5099 GeneTree:ENSGT00390000017241
HSSP:Q14671 EMBL:DQ275191 EMBL:AJ851393 IPI:IPI00581936
IPI:IPI00682137 RefSeq:NP_001012858.1 UniGene:Gga.22920
ProteinModelPortal:Q2VB19 SMR:Q2VB19 Ensembl:ENSGALT00000000834
Ensembl:ENSGALT00000035201 GeneID:419554 KEGG:gga:419554 CTD:9698
HOGENOM:HOG000238461 HOVERGEN:HBG049462 InParanoid:Q2VB19
OMA:RHVVGVK OrthoDB:EOG4P8FHP NextBio:20822590 Uniprot:Q2VB19
Length = 1189
Score = 144 (55.7 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 49/195 (25%), Positives = 83/195 (42%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + E + + L YGC R +QK ++ + P V
Sbjct: 899 GNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGC---RVIQKALEFI---PPDQQV 952
Query: 110 ISAAYRRFKDMMFS----KEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVS 165
I+ R + + + V+ KC+E + Q + + A L+TH GC
Sbjct: 953 INEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 1012
Query: 166 LNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKF 225
+ + + +L+ + H E L +D GNYV+QHVL G + KI + ++G
Sbjct: 1013 IQRILEHCLPEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNV 1072
Query: 226 EELSLLRCGSHLVEK 240
LS + S++VEK
Sbjct: 1073 LVLSQHKFASNVVEK 1087
Score = 43 (20.2 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTKGFQ 270
+++T + +Y N+V+Q+ + V + Q
Sbjct: 1114 ALYTMMKDQYANYVVQKMIDVAEPAQ 1139
>UNIPROTKB|F1NV23 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00735100 Ensembl:ENSGALT00000026590 Uniprot:F1NV23
Length = 1061
Score = 145 (56.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 44/156 (28%), Positives = 72/156 (46%)
Query: 85 YGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEV 144
YGC R +QK ++ + +V K + + + V+ KC+E + Q +
Sbjct: 808 YGC---RVIQKALESISPDQQNEMVKELDGHVLKCVK-DQNGNHVVQKCIECVQPQSLQF 863
Query: 145 LYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQH 204
+ A L+TH GC + + + +L+ + H E L +D GNYV+QH
Sbjct: 864 IIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQH 923
Query: 205 VLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK 240
VL G + KI S ++GK LS + S++VEK
Sbjct: 924 VLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEK 959
Score = 40 (19.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTKGFQ 270
+++T + +Y N+V+Q+ + + + Q
Sbjct: 986 ALYTMMKDQYANYVVQKMIDMAEPAQ 1011
>UNIPROTKB|E1BWC0 [details] [associations]
symbol:PUM2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0034063 "stress
granule assembly" evidence=IEA] [GO:0048471 "perinuclear region of
cytoplasm" evidence=IEA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0048471 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GO:GO:0010494 GO:GO:0034063
GeneTree:ENSGT00390000017241 OMA:LFDYSSQ EMBL:AADN02018552
EMBL:AADN02018553 EMBL:AADN02018554 EMBL:AADN02018555
IPI:IPI00682927 Ensembl:ENSGALT00000026591 Uniprot:E1BWC0
Length = 1062
Score = 145 (56.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 44/156 (28%), Positives = 72/156 (46%)
Query: 85 YGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEV 144
YGC R +QK ++ + +V K + + + V+ KC+E + Q +
Sbjct: 809 YGC---RVIQKALESISPDQQNEMVKELDGHVLKCVK-DQNGNHVVQKCIECVQPQSLQF 864
Query: 145 LYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQH 204
+ A L+TH GC + + + +L+ + H E L +D GNYV+QH
Sbjct: 865 IIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQH 924
Query: 205 VLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK 240
VL G + KI S ++GK LS + S++VEK
Sbjct: 925 VLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEK 960
Score = 40 (19.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 6/26 (23%), Positives = 17/26 (65%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTKGFQ 270
+++T + +Y N+V+Q+ + + + Q
Sbjct: 987 ALYTMMKDQYANYVVQKMIDMAEPAQ 1012
>UNIPROTKB|E1BE82 [details] [associations]
symbol:PUM1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 GeneTree:ENSGT00390000017241 CTD:9698 OMA:RHVVGVK
EMBL:DAAA02006263 EMBL:DAAA02006264 EMBL:DAAA02006265
IPI:IPI00713931 RefSeq:NP_001180052.1 UniGene:Bt.44441
Ensembl:ENSBTAT00000025262 GeneID:535450 KEGG:bta:535450
NextBio:20876753 Uniprot:E1BE82
Length = 1186
Score = 143 (55.4 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 47/191 (24%), Positives = 81/191 (42%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + E + + L YGC R +QK ++ + +V
Sbjct: 898 GNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGC---RVIQKALEFIPSDQQNEMV 954
Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
K + + + V+ KC+E + Q + + A L+TH GC +
Sbjct: 955 RELDGHVLKCVK-DQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRI 1013
Query: 170 INEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELS 229
+ + +L+ + H E L +D GNYV+QHVL G + KI + ++G LS
Sbjct: 1014 LEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLS 1073
Query: 230 LLRCGSHLVEK 240
+ S++VEK
Sbjct: 1074 QHKFASNVVEK 1084
Score = 43 (20.2 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTKGFQ 270
+++T + +Y N+V+Q+ + V + Q
Sbjct: 1111 ALYTMMKDQYANYVVQKMIDVAEPAQ 1136
>UNIPROTKB|H0YEH2 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525843 Uniprot:H0YEH2
Length = 1125
Score = 143 (55.4 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 47/191 (24%), Positives = 81/191 (42%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + E + + L YGC R +QK ++ + +V
Sbjct: 837 GNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGC---RVIQKALEFIPSDQQNEMV 893
Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
K + + + V+ KC+E + Q + + A L+TH GC +
Sbjct: 894 RELDGHVLKCVK-DQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRI 952
Query: 170 INEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELS 229
+ + +L+ + H E L +D GNYV+QHVL G + KI + ++G LS
Sbjct: 953 LEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLS 1012
Query: 230 LLRCGSHLVEK 240
+ S++VEK
Sbjct: 1013 QHKFASNVVEK 1023
Score = 42 (19.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTK 267
+++T + +Y N+V+Q+ + V +
Sbjct: 1050 ALYTMMKDQYANYVVQKMIDVAE 1072
>UNIPROTKB|B4DG92 [details] [associations]
symbol:PUM1 "cDNA FLJ56067, highly similar to Pumilio
homolog 1" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
HOGENOM:HOG000238461 HOVERGEN:HBG049462 EMBL:AL356320 EMBL:AL445235
UniGene:Hs.281707 HGNC:HGNC:14957 ChiTaRS:PUM1 EMBL:AK294477
IPI:IPI00939543 SMR:B4DG92 STRING:B4DG92 Ensembl:ENST00000373742
UCSC:uc010ogb.1 Uniprot:B4DG92
Length = 1127
Score = 143 (55.4 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 47/191 (24%), Positives = 81/191 (42%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + E + + L YGC R +QK ++ + +V
Sbjct: 839 GNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGC---RVIQKALEFIPSDQQNEMV 895
Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
K + + + V+ KC+E + Q + + A L+TH GC +
Sbjct: 896 RELDGHVLKCVK-DQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRI 954
Query: 170 INEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELS 229
+ + +L+ + H E L +D GNYV+QHVL G + KI + ++G LS
Sbjct: 955 LEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLS 1014
Query: 230 LLRCGSHLVEK 240
+ S++VEK
Sbjct: 1015 QHKFASNVVEK 1025
Score = 42 (19.8 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTK 267
+++T + +Y N+V+Q+ + V +
Sbjct: 1052 ALYTMMKDQYANYVVQKMIDVAE 1074
>UNIPROTKB|Q14671 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS]
[GO:0016044 "cellular membrane organization" evidence=TAS]
Reactome:REACT_11123 InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005829 GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10
InterPro:IPR011989 EMBL:CH471059 GO:GO:0003723 GO:GO:0016044
GO:GO:0006892 eggNOG:COG5099 CTD:9698 HOGENOM:HOG000238461
HOVERGEN:HBG049462 OrthoDB:EOG4P8FHP EMBL:AF315592 EMBL:D43951
EMBL:AL356320 EMBL:AL445235 EMBL:AK291779 EMBL:BC013398
IPI:IPI00551014 IPI:IPI00941189 RefSeq:NP_001018494.1
RefSeq:NP_055491.1 UniGene:Hs.281707 PDB:1IB2 PDB:1M8W PDB:1M8X
PDB:1M8Y PDB:1M8Z PDB:2YJY PDB:3BSB PDB:3BSX PDB:3Q0L PDB:3Q0M
PDB:3Q0N PDB:3Q0O PDB:3Q0P PDBsum:1IB2 PDBsum:1M8W PDBsum:1M8X
PDBsum:1M8Y PDBsum:1M8Z PDBsum:2YJY PDBsum:3BSB PDBsum:3BSX
PDBsum:3Q0L PDBsum:3Q0M PDBsum:3Q0N PDBsum:3Q0O PDBsum:3Q0P
ProteinModelPortal:Q14671 SMR:Q14671 DIP:DIP-29082N IntAct:Q14671
MINT:MINT-1199500 STRING:Q14671 PhosphoSite:Q14671 DMDM:41688619
UCD-2DPAGE:Q14671 PaxDb:Q14671 PRIDE:Q14671 DNASU:9698
Ensembl:ENST00000257075 Ensembl:ENST00000440538 GeneID:9698
KEGG:hsa:9698 UCSC:uc001bsi.1 UCSC:uc001bsj.1 GeneCards:GC01M031405
HGNC:HGNC:14957 HPA:HPA027424 MIM:607204 neXtProt:NX_Q14671
PharmGKB:PA34042 PhylomeDB:Q14671 ChiTaRS:PUM1
EvolutionaryTrace:Q14671 GenomeRNAi:9698 NextBio:36439
ArrayExpress:Q14671 Bgee:Q14671 CleanEx:HS_PUM1
Genevestigator:Q14671 GermOnline:ENSG00000134644 Uniprot:Q14671
Length = 1186
Score = 143 (55.4 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 47/191 (24%), Positives = 81/191 (42%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + E + + L YGC R +QK ++ + +V
Sbjct: 898 GNYVIQKFFEFGSLEQKLALAERIRGHVLSLALQMYGC---RVIQKALEFIPSDQQNEMV 954
Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
K + + + V+ KC+E + Q + + A L+TH GC +
Sbjct: 955 RELDGHVLKCVK-DQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRVIQRI 1013
Query: 170 INEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELS 229
+ + +L+ + H E L +D GNYV+QHVL G + KI + ++G LS
Sbjct: 1014 LEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLS 1073
Query: 230 LLRCGSHLVEK 240
+ S++VEK
Sbjct: 1074 QHKFASNVVEK 1084
Score = 42 (19.8 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 6/23 (26%), Positives = 16/23 (69%)
Query: 245 SIFTPCQHKYGNFVIQQALRVTK 267
+++T + +Y N+V+Q+ + V +
Sbjct: 1111 ALYTMMKDQYANYVVQKMIDVAE 1133
>ZFIN|ZDB-GENE-030131-2074 [details] [associations]
symbol:pum1 "pumilio homolog 1 (Drosophila)"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 ZFIN:ZDB-GENE-030131-2074 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
GeneTree:ENSGT00390000017241 EMBL:CABZ01057427 EMBL:CABZ01093012
EMBL:CU207343 IPI:IPI00995409 Ensembl:ENSDART00000122308
ArrayExpress:E7FFV0 Bgee:E7FFV0 Uniprot:E7FFV0
Length = 1154
Score = 140 (54.3 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 50/196 (25%), Positives = 82/196 (41%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + E + + L YGC R +QK ++ + P V
Sbjct: 863 GNYVIQKFFEFGSLDQKLALAERIRGHVLSLALQMYGC---RVIQKALEFI---PSDQQV 916
Query: 110 ISAAYRRFKDMMFS----KEASSVIIKCLETLDEQKNEVLYLAAMNH-FRELATHVRGCV 164
I+ R + + + V+ KC+E + + + A L+TH GC
Sbjct: 917 INEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPHALQFIIDAFKGQQVFALSTHPYGCR 976
Query: 165 SLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGK 224
+ + + +L+ I H E L +D GNYV+QHVL G + KI S ++G
Sbjct: 977 VIQRILEHCLPEQTLSILEEIHQHTEQLVQDQYGNYVIQHVLEHGRAEDKSKIVSEIRGN 1036
Query: 225 FEELSLLRCGSHLVEK 240
LS + S++VEK
Sbjct: 1037 VLGLSQHKFASNVVEK 1052
>TAIR|locus:2117552 [details] [associations]
symbol:PUM6 "pumilio 6" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0009507 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
GO:GO:0006417 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003729 EMBL:AL049480 eggNOG:COG5099 HSSP:Q14671
HOGENOM:HOG000238460 EMBL:AF360298 EMBL:AY133866 EMBL:AK318840
EMBL:AK319148 IPI:IPI00518278 IPI:IPI00520481 IPI:IPI00656838
IPI:IPI00972816 PIR:T04242 RefSeq:NP_001031720.1 RefSeq:NP_567733.1
RefSeq:NP_974618.2 UniGene:At.21892 UniGene:At.28428
ProteinModelPortal:Q9C5E7 SMR:Q9C5E7 STRING:Q9C5E7 PaxDb:Q9C5E7
PRIDE:Q9C5E7 EnsemblPlants:AT4G25880.1 GeneID:828694
KEGG:ath:AT4G25880 TAIR:At4g25880 InParanoid:Q9C5E7 OMA:MEGSFLA
PhylomeDB:Q9C5E7 ProtClustDB:CLSN2689613 Genevestigator:Q9C5E7
Uniprot:Q9C5E7
Length = 861
Score = 137 (53.3 bits), Expect = 5.4e-06, P = 5.4e-06
Identities = 48/193 (24%), Positives = 83/193 (43%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK +ST ++ + + L YGC R +QK + ++ + L
Sbjct: 582 GNYVIQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGC---RVIQKALDVIEPDQRVRLA 638
Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
+ + + + + VI KC+E + K + A L+ H GC +
Sbjct: 639 RELDGQVMRCVR-DQNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVIQRL 697
Query: 170 INEMRGPRRGGLL--DLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEE 227
+ + + +++ S LSKD GNYV QHVL G + E+I L G +
Sbjct: 698 LERCSHDHQCRFITEEILESVC-VLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHIVQ 756
Query: 228 LSLLRCGSHLVEK 240
LSL + S+++EK
Sbjct: 757 LSLHKFASNVIEK 769
>UNIPROTKB|H0YDC5 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000525997 Uniprot:H0YDC5
Length = 217
Score = 125 (49.1 bits), Expect = 7.9e-06, P = 7.9e-06
Identities = 50/192 (26%), Positives = 82/192 (42%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
GS F+Q L +F + + + LM D +G ++ +QK + GS L
Sbjct: 9 GSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYV---IQKFFEF--GSLEQKLA 63
Query: 110 ISAAYR-RFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNN 168
++ R + VI K LE + + +V L+TH GC +
Sbjct: 64 LAERIRGHVLSLALQMYGCRVIQKALEFIPSDQ-QVF---------ALSTHPYGCRVIQR 113
Query: 169 FINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEEL 228
+ + +L+ + H E L +D GNYV+QHVL G + KI + ++G L
Sbjct: 114 ILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVL 173
Query: 229 SLLRCGSHLVEK 240
S + S++VEK
Sbjct: 174 SQHKFASNVVEK 185
>FB|FBgn0003165 [details] [associations]
symbol:pum "pumilio" species:7227 "Drosophila melanogaster"
[GO:0005737 "cytoplasm" evidence=NAS;IDA] [GO:0048477 "oogenesis"
evidence=TAS] [GO:0007280 "pole cell migration" evidence=IMP;TAS]
[GO:0042078 "germ-line stem cell division" evidence=NAS;TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0017148
"negative regulation of translation" evidence=TAS] [GO:0007281
"germ cell development" evidence=TAS] [GO:0001709 "cell fate
determination" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] [GO:0008258 "head involution"
evidence=IMP] [GO:0007268 "synaptic transmission" evidence=IMP]
[GO:0008595 "anterior/posterior axis specification, embryo"
evidence=TAS] [GO:0007067 "mitosis" evidence=TAS] [GO:0045786
"negative regulation of cell cycle" evidence=TAS] [GO:0016477 "cell
migration" evidence=TAS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=TAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=TAS] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=TAS] [GO:0007616 "long-term memory"
evidence=IMP;TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0050804
"regulation of synaptic transmission" evidence=IMP] [GO:0008582
"regulation of synaptic growth at neuromuscular junction"
evidence=IDA] [GO:0048149 "behavioral response to ethanol"
evidence=IMP] [GO:0042059 "negative regulation of epidermal growth
factor receptor signaling pathway" evidence=IMP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 EMBL:AE014297 GO:GO:0005737 GO:GO:0045892
GO:GO:0007280 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0007067 GO:GO:0008595 GO:GO:0007616 GO:GO:0048477
GO:GO:0048813 GO:GO:0003730 GO:GO:0045727 GO:GO:0042059
GO:GO:0001709 GO:GO:0045786 GO:GO:0008582 GO:GO:0000288
GO:GO:0000900 GO:GO:0008258 GO:GO:0042078 GO:GO:0050804
eggNOG:COG5099 GeneTree:ENSGT00390000017241 EMBL:X62589 EMBL:L07943
EMBL:BT001872 EMBL:BT009970 EMBL:BT021317 PIR:A46221
RefSeq:NP_524285.2 RefSeq:NP_731314.1 RefSeq:NP_731315.1
RefSeq:NP_731316.2 RefSeq:NP_788604.1 UniGene:Dm.1115 PDB:3H3D
PDBsum:3H3D ProteinModelPortal:P25822 SMR:P25822 MINT:MINT-822094
STRING:P25822 PaxDb:P25822 EnsemblMetazoa:FBtr0081990
EnsemblMetazoa:FBtr0081991 EnsemblMetazoa:FBtr0081992
EnsemblMetazoa:FBtr0333667 GeneID:41094 KEGG:dme:Dmel_CG9755
UCSC:CG9755-RA CTD:41094 FlyBase:FBgn0003165 InParanoid:P25822
OMA:LASPTIC OrthoDB:EOG4HMGRT PhylomeDB:P25822
EvolutionaryTrace:P25822 GenomeRNAi:41094 NextBio:822132
Bgee:P25822 GermOnline:CG9755 Uniprot:P25822
Length = 1533
Score = 141 (54.7 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 42/156 (26%), Positives = 71/156 (45%)
Query: 85 YGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEV 144
YGC R +QK ++ + +V K + + + V+ KC+E +D +
Sbjct: 1196 YGC---RVIQKALESISPEQQQEIVHELDGHVLKCVK-DQNGNHVVQKCIECVDPVALQF 1251
Query: 145 LYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQH 204
+ A L+TH GC + + + +LD + H E L +D GNYV+QH
Sbjct: 1252 IINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDELHEHTEQLIQDQYGNYVIQH 1311
Query: 205 VLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK 240
VL G + + + ++GK LS + S++VEK
Sbjct: 1312 VLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEK 1347
Score = 41 (19.5 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 27 TYGKNALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVY 74
T G+N L+ P G ++ + +LS +DST K+ E V+
Sbjct: 421 TQGENILVPPPSRAYAHGGASDTSNSGNAGILSPRDSTCA-KVVEYVF 467
Score = 38 (18.4 bits), Expect = 1.7e-05, Sum P(3) = 1.7e-05
Identities = 6/19 (31%), Positives = 14/19 (73%)
Query: 253 KYGNFVIQQALRVTKGFQM 271
+Y N+V+Q+ + V++ Q+
Sbjct: 1379 QYANYVVQKMIDVSEPTQL 1397
>POMBASE|SPAC1687.22c [details] [associations]
symbol:puf3 "RNA-binding protein Puf3 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005741 "mitochondrial outer membrane"
evidence=IEA] [GO:0005829 "cytosol" evidence=IDA] [GO:0033554
"cellular response to stress" evidence=IEP] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 PomBase:SPAC1687.22c GO:GO:0005829 EMBL:CU329670
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GenomeReviews:CU329670_GR GO:GO:0005741 GO:GO:0033554 GO:GO:0003729
GO:GO:0000288 eggNOG:COG5099 RefSeq:NP_593141.2 HSSP:Q14671
ProteinModelPortal:O94462 SMR:O94462 EnsemblFungi:SPAC1687.22c.1
GeneID:2542300 KEGG:spo:SPAC1687.22c OrthoDB:EOG4RR9RJ
NextBio:20803362 Uniprot:O94462
Length = 732
Score = 126 (49.4 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 47/191 (24%), Positives = 79/191 (41%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + + + + F L YGC R +QK I+ + + L
Sbjct: 447 GNYVVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGC---RVVQKAIEYISPEHQVQL- 502
Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
I D + + + VI K +E +D + + A L+ H GC +
Sbjct: 503 IQELDGHVLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRA 562
Query: 170 INEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELS 229
I R+ + +L+ H L++D GNYVVQH+L G + I L+ LS
Sbjct: 563 IEHCHSERKLIIEELLP-HILKLTQDQYGNYVVQHILRTGSESDKKYIFDLMIDHLLFLS 621
Query: 230 LLRCGSHLVEK 240
+ S++VE+
Sbjct: 622 CHKFASNVVER 632
>TAIR|locus:2133534 [details] [associations]
symbol:PUM15 "pumilio 15" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR001313 InterPro:IPR016024
Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AF076275 eggNOG:COG5099 EMBL:AL161512 IPI:IPI00522940
PIR:T01828 RefSeq:NP_192596.1 UniGene:At.54205
ProteinModelPortal:O81465 SMR:O81465 PRIDE:O81465
EnsemblPlants:AT4G08560.1 GeneID:826417 KEGG:ath:AT4G08560
TAIR:At4g08560 InParanoid:O81465 OMA:ENIRREM PhylomeDB:O81465
Genevestigator:O81465 InterPro:IPR010264 Pfam:PF05938
Uniprot:O81465
Length = 477
Score = 123 (48.4 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 50/204 (24%), Positives = 86/204 (42%)
Query: 49 GGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISL 108
G +F + M D IT ++ + V + PF+ + H ++Q L++ L IS
Sbjct: 200 GHKVFRKLMEKCTDEQIT-RVLDIVLEEPFEFVRLCVHTHGTHAIQGLMRSLCSEEQISR 258
Query: 109 VISAAYRRFKDMMFSKE--ASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSL 166
+ + ++ +K+ A VI+ C L + + ++A GC L
Sbjct: 259 FMETLC--YVSLLLTKDVIAHRVILFCFNQFSPSHTRYLLEVIVQNCYQVAIDQNGCCML 316
Query: 167 NNFINEMRGPRRGGLLDLISSHAEFLSKDPSG----------NYVVQHVLGLGDLKYSEK 216
I + R L+ I S A L + G NYVVQ++L L D + +
Sbjct: 317 KKLIRQSSRELRDPLIKEIISIAVRLCGNCYGTLTPKSLLVRNYVVQYLLRLKDYEVTSA 376
Query: 217 ICSLLKGKFEELSLLRCGSHLVEK 240
+ L G + +LS + GSH+V+K
Sbjct: 377 LSKHLDGNYVQLSYDKYGSHVVQK 400
>CGD|CAL0000028 [details] [associations]
symbol:MPT5 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045947 "negative regulation of
translational initiation" evidence=IEA] [GO:1900153 "positive
regulation of nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0030674 "protein binding, bridging"
evidence=IEA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 CGD:CAL0000028
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003723
EMBL:AACQ01000010 EMBL:AACQ01000009 eggNOG:COG5099
RefSeq:XP_722196.1 RefSeq:XP_722310.1 ProteinModelPortal:Q5AKY7
GeneID:3636032 GeneID:3636205 KEGG:cal:CaO19.12458
KEGG:cal:CaO19.4991 Uniprot:Q5AKY7
Length = 938
Score = 122 (48.0 bits), Expect = 0.00028, P = 0.00028
Identities = 44/195 (22%), Positives = 87/195 (44%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK++ + + + E + F + + +G R++QK+I L S + L+
Sbjct: 338 GNYLIQKLIVYCNESNLDLLMEILQYNLFQISINQHG---TRALQKIIDSLNNSHQLGLL 394
Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
I +++ + VI K L + + +Y + ++ +ATH GC L
Sbjct: 395 IKGLKPYIIELIKDLNGNHVIQKILNKYEPPDCQFIYDSIIDDLYIVATHKHGCCVLQKC 454
Query: 170 INEMRGPRRGGLLDLISSHAEF--LSKDPSGNYVVQHVLGLGDLKYSEKIC-SLLKGKFE 226
+N + + G I F L D GNYV+Q+++ + L + +I + +
Sbjct: 455 LNHVTLQQLGEFSRAILKFENFKLLINDQFGNYVLQYLISINSLDINFQIFQNFVNFGIS 514
Query: 227 ELSLLRCGSHLVEKY 241
L L+ S++VEK+
Sbjct: 515 NLCNLKFSSNVVEKF 529
>TAIR|locus:2076324 [details] [associations]
symbol:PUM4 "pumilio 4" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302
PROSITE:PS50303 SMART:SM00025 GO:GO:0005737 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729 EMBL:AC009400
eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460 InterPro:IPR012940
Pfam:PF07990 EMBL:AK117911 EMBL:BT005311 IPI:IPI00525853
RefSeq:NP_187647.2 UniGene:At.27627 UniGene:At.48643
ProteinModelPortal:Q9SS47 SMR:Q9SS47 PaxDb:Q9SS47 PRIDE:Q9SS47
EnsemblPlants:AT3G10360.1 GeneID:820198 KEGG:ath:AT3G10360
TAIR:At3g10360 InParanoid:Q9SS47 OMA:FKNNKTR PhylomeDB:Q9SS47
Genevestigator:Q9SS47 Uniprot:Q9SS47
Length = 1003
Score = 121 (47.7 bits), Expect = 0.00039, P = 0.00039
Identities = 40/192 (20%), Positives = 85/192 (44%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + ++ E V + L YGC + + ++++L + + +
Sbjct: 714 GNYVIQKFFEHGTTKQRKELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKEL 773
Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
+ + D + + VI KC+E L + + + + L+TH GC +
Sbjct: 774 DGSVMKCVHD----QNGNHVIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRV 829
Query: 170 INEMRG-PRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEEL 228
+ + + +++ I L++D GNYV+QH++ G +I + L G+ ++
Sbjct: 830 LEHIDDIETQRIIMEEIMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIVKM 889
Query: 229 SLLRCGSHLVEK 240
S + S++VEK
Sbjct: 890 SQQKFASNVVEK 901
>SGD|S000003146 [details] [associations]
symbol:MPT5 "mRNA-binding protein of the PUF family"
species:4932 "Saccharomyces cerevisiae" [GO:0030674 "protein
binding, bridging" evidence=IPI] [GO:0045947 "negative regulation
of translational initiation" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0003729 "mRNA binding" evidence=IDA]
[GO:1900153 "positive regulation of nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SGD:S000003146 GO:GO:0005737 SUPFAM:SSF48371
Gene3D:1.25.10.10 InterPro:IPR011989 EMBL:BK006941 GO:GO:0045947
GO:GO:0003729 eggNOG:COG5099 GeneTree:ENSGT00390000017241
EMBL:X83690 EMBL:Z72700 EMBL:D25541 EMBL:D26184 PIR:S64195
RefSeq:NP_011337.1 ProteinModelPortal:P39016 SMR:P39016
DIP:DIP-2271N IntAct:P39016 MINT:MINT-2779525 STRING:P39016
PaxDb:P39016 PRIDE:P39016 EnsemblFungi:YGL178W GeneID:852697
KEGG:sce:YGL178W CYGD:YGL178w HOGENOM:HOG000113640 OMA:ISINQYG
OrthoDB:EOG42NN7Z NextBio:972038 Genevestigator:P39016
GermOnline:YGL178W GO:GO:1900153 Uniprot:P39016
Length = 859
Score = 120 (47.3 bits), Expect = 0.00042, P = 0.00042
Identities = 46/205 (22%), Positives = 90/205 (43%)
Query: 50 GSLFLQKM---LSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCI 106
G+ +QK+ L+ + T+ + + +Y F + + YG RS+QK+I + I
Sbjct: 262 GNYLVQKLCDYLTAEQKTL---LIQTIYPNVFQISINQYG---TRSLQKIIDTVDNEVQI 315
Query: 107 SLVISAAYRRFKD------MMFSKEASSVIIKCLETLDEQKNEVLY--LAAMNHFRELAT 158
L+I + F ++ + VI KC+ K + + N+ ++T
Sbjct: 316 DLIIKGFSQEFTSIEQVVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITIST 375
Query: 159 HVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYS--EK 216
H GC L ++ + + I L D GNY++Q +L + +L + +
Sbjct: 376 HKHGCCVLQKLLSVCTLQQIFKISVKIVQFLPGLINDQFGNYIIQFLLDIKELDFYLLAE 435
Query: 217 ICSLLKGKFEELSLLRCGSHLVEKY 241
+ + L + +LS L+ S++VEK+
Sbjct: 436 LFNRLSNELCQLSCLKFSSNVVEKF 460
>TAIR|locus:2087560 [details] [associations]
symbol:PUM5 "pumilio 5" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005773 "vacuole" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006487 "protein N-linked glycosylation"
evidence=RCA] InterPro:IPR001313 InterPro:IPR016024 Pfam:PF00806
PROSITE:PS50302 PROSITE:PS50303 SMART:SM00025 GO:GO:0005829
GO:GO:0005773 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006417
SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0003729
EMBL:AP000383 eggNOG:COG5099 HSSP:Q14671 HOGENOM:HOG000238460
EMBL:AK228410 EMBL:BX824276 IPI:IPI00527056 IPI:IPI00972845
RefSeq:NP_188660.3 UniGene:At.38266 ProteinModelPortal:Q9LJX4
SMR:Q9LJX4 STRING:Q9LJX4 PaxDb:Q9LJX4 PRIDE:Q9LJX4
EnsemblPlants:AT3G20250.1 GeneID:821569 KEGG:ath:AT3G20250
TAIR:At3g20250 InParanoid:Q9LJX4 OMA:QHKYASN PhylomeDB:Q9LJX4
Genevestigator:Q9LJX4 Uniprot:Q9LJX4
Length = 961
Score = 119 (46.9 bits), Expect = 0.00062, P = 0.00062
Identities = 45/192 (23%), Positives = 78/192 (40%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + ++ + + L YGC R +QK ++++ L+
Sbjct: 678 GNYVIQKFIEHGTPAQREELVKQLAGQMVSLSLQMYGC---RVIQKALEVIDVDQKTELI 734
Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
K + + + VI KC+E++ + + A L+TH GC +
Sbjct: 735 RELDGNVLKCVR-DQNGNHVIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRI 793
Query: 170 INEMRGPRRGG-LLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEEL 228
+ ++D I A L+ D GNYV QHVL G +I L G ++
Sbjct: 794 LEHCSDDEETHCIIDEILESAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQM 853
Query: 229 SLLRCGSHLVEK 240
S + S++VEK
Sbjct: 854 SQHKYASNVVEK 865
>UNIPROTKB|H0YC97 [details] [associations]
symbol:PUM1 "Pumilio homolog 1" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR001313
InterPro:IPR016024 Pfam:PF00806 PROSITE:PS50302 PROSITE:PS50303
SMART:SM00025 SUPFAM:SSF48371 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0003723 EMBL:AL356320 EMBL:AL445235 HGNC:HGNC:14957
ChiTaRS:PUM1 Ensembl:ENST00000529846 Bgee:H0YC97 Uniprot:H0YC97
Length = 227
Score = 109 (43.4 bits), Expect = 0.00077, P = 0.00077
Identities = 52/204 (25%), Positives = 86/204 (42%)
Query: 41 IVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLL 100
I+ + + GS F+Q L +F + + + LM D +G ++ +QK +
Sbjct: 4 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYV---IQKFFEF- 59
Query: 101 VGSPCISLVISAAYR-RFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATH 159
GS L ++ R + VI K LE + + + + REL H
Sbjct: 60 -GSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQVINEMV-----RELDGH 113
Query: 160 VRGCV---SLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEK 216
V CV + N+ + + + L I F +D GNYV+QHVL G + K
Sbjct: 114 VLKCVKDQNGNHVVQKCIECVQPQSLQFIID--AFKGQDQYGNYVIQHVLEHGRPEDKSK 171
Query: 217 ICSLLKGKFEELSLLRCGSHLVEK 240
I + ++G LS + S++VEK
Sbjct: 172 IVAEIRGNVLVLSQHKFASNVVEK 195
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.139 0.405 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 304 304 0.00098 115 3 11 22 0.37 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 56
No. of states in DFA: 576 (61 KB)
Total size of DFA: 191 KB (2110 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 23.25u 0.11s 23.36t Elapsed: 00:00:02
Total cpu time: 23.25u 0.11s 23.36t Elapsed: 00:00:02
Start: Fri May 10 11:01:07 2013 End: Fri May 10 11:01:09 2013