BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044799
(304 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LM20|PUM8_ARATH Putative pumilio homolog 8, chloroplastic OS=Arabidopsis thaliana
GN=APUM8 PE=3 SV=2
Length = 515
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 113/235 (48%), Gaps = 16/235 (6%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK+L + +I V P L+ + R +Q+L++ + ISLV
Sbjct: 248 GNYLMQKLLDVCNEEQRTQIILMVTSEPGQLIRISLNAYGTRVVQRLVESIKTRKQISLV 307
Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
SA F +++ + VI +CL+ L + NE ++ A ++ATH GC L
Sbjct: 308 KSALRPGFLNLIRDLNGNHVIQRCLQCLSTEDNEFIFEDATKFCIDIATHRHGCCVLQKC 367
Query: 170 INEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELS 229
I G +R L+ IS ++ FL++DP GNY VQ VL L D + + LKG + ELS
Sbjct: 368 IAYSSGLQREKLVTEISRNSLFLAQDPYGNYAVQFVLELRDFSAIAAMLAQLKGHYVELS 427
Query: 230 LLRCGSHLVEK------YQRPSIFTP----------CQHKYGNFVIQQALRVTKG 268
+ + SH+VE+ RP I Q Y NFVIQ AL VTKG
Sbjct: 428 MQKFSSHMVERCLTHCPESRPQIVRELISVPHFDILIQDPYANFVIQAALAVTKG 482
>sp|Q9LVC3|PUM12_ARATH Pumilio homolog 12 OS=Arabidopsis thaliana GN=APUM12 PE=2 SV=2
Length = 596
Score = 101 bits (252), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 86/312 (27%), Positives = 138/312 (44%), Gaps = 56/312 (17%)
Query: 10 LNRGIGIANLSTSIGPGTYGKNALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKI 69
LN + ++ + S+ P Y +A+ I L K + G FLQ++ S KD I
Sbjct: 254 LNEDLTMSLNNLSLQPQKYNS---IAEARGKIYYLAKDQHGCRFLQRIFSEKDGNDIEMI 310
Query: 70 FEAVYKYPFDLMTDGYGCHL------------------------------------ARSM 93
F + Y +LM D +G +L R++
Sbjct: 311 FNEIIDYISELMMDPFGNYLVQKLLEVCNEDQRMQIVHSITRKPGLLIKISCDMHGTRAV 370
Query: 94 QKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHF 153
QK+++ IS++ISA ++ + + V+ +CL+ L + L+ AA+ H
Sbjct: 371 QKIVETAKREEEISIIISALKHGIVHLIKNVNGNHVVQRCLQYLLPYCGKFLFEAAITHC 430
Query: 154 RELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKY 213
ELAT GC L + G ++ L+ I+S+A LS+DP GNYV+Q+V L
Sbjct: 431 VELATDRHGCCVLQKCLGYSEGEQKQHLVSEIASNALLLSQDPFGNYVLQYVFELQLQWA 490
Query: 214 SEKICSLLKGKFEELSLLRCGSHLVEK-------YQRPSIFTPCQH----------KYGN 256
+ +I L+G + ELS+ +C S++VEK R I + YGN
Sbjct: 491 TFEILEQLEGNYTELSMQKCSSNVVEKCLKLADDKHRARIIRELINYGRLDQVMLDPYGN 550
Query: 257 FVIQQALRVTKG 268
+VIQ AL+ +KG
Sbjct: 551 YVIQAALKQSKG 562
>sp|Q9LVG3|PUM18_ARATH Pumilio homolog 18 OS=Arabidopsis thaliana GN=APUM18 PE=2 SV=1
Length = 327
Score = 98.2 bits (243), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 87/296 (29%), Positives = 141/296 (47%), Gaps = 36/296 (12%)
Query: 19 LSTSIGPGTYGKNALLAQPDYDIVLLGKTEG-GSLFLQKMLSGKDSTITYK---IFEAVY 74
+S SI P + A A P + + T+G G + ++M+S D T + + +
Sbjct: 23 ISGSIPPPGFAPRAS-ATPLHAALFNLMTDGDGVSYFKEMISNSDKTELQRMASLLTSDS 81
Query: 75 KYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCL 134
Y ++T +G +R +QKL+ + +A RRF + K AS V I+ +
Sbjct: 82 DYFMSIVTTKFG---SRRVQKLLG--KSDDVDAFFCAAILRRFLHITTDKYASYVTIRAM 136
Query: 135 ETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPR-RGGLLDLISSHAEFLS 193
D+ + LY + H +LA GC++LN+ I + P R LL+L++S+A LS
Sbjct: 137 VVFDKVMKKALYERILYHALDLACDQHGCIALNDIITDADDPYYRDQLLELVASNALRLS 196
Query: 194 KDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEKYQR---------- 243
D SGN+VVQHVL L D + I L G+ ELS + GS++VEK
Sbjct: 197 NDASGNFVVQHVLTLYDSRCIHNIAVNLYGQCIELSFKKYGSYIVEKLLEVEESMVVVVV 256
Query: 244 -------PSIFTPCQHKYGNFVIQQALRVTKGFQMTERNIIQELGQSSFIQGIVPF 292
+ ++++GNFV+ +ALR TK M+ ++ L +Q ++PF
Sbjct: 257 ELLGCDGDRLMRLARNEFGNFVVVKALRFTK---MSRMDLFWGL-----VQKLMPF 304
>sp|Q9C9R6|PUM7_ARATH Putative pumilio homolog 7, chloroplastic OS=Arabidopsis thaliana
GN=APUM7 PE=3 SV=2
Length = 650
Score = 95.5 bits (236), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 118/280 (42%), Gaps = 52/280 (18%)
Query: 41 IVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHL----------- 89
+ L+ K + G FLQ++ S IF V + +LM D +G +L
Sbjct: 338 VYLMAKDQHGCRFLQRIFDEGTSVDAMIIFNEVIAHVVELMMDPFGNYLMQKLLDVCTEE 397
Query: 90 -------------------------ARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSK 124
R +Q+L++ + ISLV A F D++
Sbjct: 398 QRTQIVLVATEEPGQLIRISLNAYGTRVVQRLVETIRSGKQISLVKLALRPGFLDLIKDL 457
Query: 125 EASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDL 184
+ VI +CL+ L + N+ ++ AA E+ATH GC L I +R L+
Sbjct: 458 NGNHVIQRCLQCLSTEDNKFIFDAATKFCTEIATHRHGCCVLQKCIAYSMRQQREKLIAE 517
Query: 185 ISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK---- 240
IS ++ L++DP GNY VQ V+ L + + LKG + +LS+ + SH+VE+
Sbjct: 518 ISRNSLLLAQDPFGNYAVQFVIELRIPSAVAMMLAQLKGHYVQLSMQKFSSHMVERCLMH 577
Query: 241 --YQRPSIFTP----------CQHKYGNFVIQQALRVTKG 268
RP I Q Y NFVIQ AL TKG
Sbjct: 578 CPESRPQIVRELVSVPHFDQLLQDPYANFVIQAALAATKG 617
>sp|Q9LSS8|PUM19_ARATH Putative pumilio homolog 19 OS=Arabidopsis thaliana GN=APUM19 PE=3
SV=2
Length = 327
Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 76/247 (30%), Positives = 120/247 (48%), Gaps = 27/247 (10%)
Query: 47 TEG-GSLFLQKMLSGKDSTITYK---IFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVG 102
T+G G + ++M+S D T + + + Y ++T +G +R +QKL+
Sbjct: 50 TDGDGVSYFKEMISKSDKTELQRMASLLTSDSDYFMSIVTTKFG---SRRVQKLLG--KS 104
Query: 103 SPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRG 162
+ +A RRF + K AS V I+ + D+ + LY + H +LA G
Sbjct: 105 DDVDAFFCAAILRRFLHITTDKYASYVTIRAMVVFDKVMKKALYERILYHALDLACDQHG 164
Query: 163 CVSLNNFINEMRGPR-RGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLL 221
C++LN+ I + P R LL+L+ S+A LS D SGN+VVQHVL L D + I L
Sbjct: 165 CIALNDIITDADDPYYRDQLLELVVSNALRLSNDASGNFVVQHVLTLYDSRCIHNIAVNL 224
Query: 222 KGKFEELSLLRCGSHLVEKYQR-----------------PSIFTPCQHKYGNFVIQQALR 264
G+ ELS + GS++VEK + ++++GNFV+ +ALR
Sbjct: 225 YGQCIELSFKKYGSYIVEKLLEVEESMVVVVVELLGCDGDRLMRLARNEFGNFVVVKALR 284
Query: 265 VTKGFQM 271
TK +M
Sbjct: 285 FTKEMRM 291
>sp|Q9LXC5|PUM21_ARATH Putative pumilio homolog 21 OS=Arabidopsis thaliana GN=APUM21 PE=3
SV=1
Length = 517
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 119/249 (47%), Gaps = 37/249 (14%)
Query: 60 GKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCIS-LVISAAYRRFK 118
G T T +IF L T+ YG Q L L SP + L+ A F
Sbjct: 253 GSALTTTKRIF-------LHLATNQYGS------QALRILFRRSPSLDHLLFCAVDTNFF 299
Query: 119 DMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRR 178
+M K +II + +D+ K E LY + LA GC++LNN + E+RG R
Sbjct: 300 LLMSDKYGRGLIIPAIRAVDKTKKESLYKLTYEYTLHLARLETGCLALNNVLQEIRGIYR 359
Query: 179 GGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLV 238
+ + ++++A++LS DP G +VVQ++L L + + I L+G F L++ R GS++V
Sbjct: 360 DLIFECVANNADWLSFDPYGTHVVQNILILQNPVATTAIAERLRGSFFRLAMERQGSYVV 419
Query: 239 EK-----YQRPSIFTP-----------CQHKYGNFVIQQALRVTKGFQMTERNIIQELGQ 282
EK + R + K+GNFV+Q ALRV K +M R +++E
Sbjct: 420 EKCLKSDFARDQVLEEFRGNAKEWVRMTTDKFGNFVVQSALRVMKEKEM--RPLLRE--- 474
Query: 283 SSFIQGIVP 291
F++ + P
Sbjct: 475 --FVEKLRP 481
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 7/103 (6%)
Query: 44 LGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGS 103
L + E G L L +L IFE V L D YG H+ +++ L++ +
Sbjct: 337 LARLETGCLALNNVLQEIRGIYRDLIFECVANNADWLSFDPYGTHVVQNI-----LILQN 391
Query: 104 PCISLVISAAYR-RFKDMMFSKEASSVIIKCLETLDEQKNEVL 145
P + I+ R F + ++ S V+ KCL++ D +++VL
Sbjct: 392 PVATTAIAERLRGSFFRLAMERQGSYVVEKCLKS-DFARDQVL 433
>sp|Q1PFN9|PUM9_ARATH Pumilio homolog 9 OS=Arabidopsis thaliana GN=APUM9 PE=2 SV=1
Length = 564
Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 125/274 (45%), Gaps = 23/274 (8%)
Query: 14 IGIANLSTSIGPGTY--GKNALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFE 71
IG L + GT+ K LLA D+ +V L G+ +QK+ D I
Sbjct: 262 IGCRVLQKLVEEGTFHEAKVILLAIIDH-VVELSMDPFGNYIVQKLFDVSDEEQRTLIVS 320
Query: 72 AVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVII 131
+ P +L+ + R +QK+I+ + I+LV S F ++ + VI
Sbjct: 321 VLTSNPRELIRICLNTYGTRVVQKMIETVKTKQQIALVKSGLKPGFLALVKDLNGNHVIQ 380
Query: 132 KCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEF 191
CL+TL NE + AA + E+A H GC L I+ G +R L+ IS ++
Sbjct: 381 SCLQTLGPNDNEFVLEAATKYCAEIAIHRHGCCVLQCCISNSVGLQRERLVAEISRNSLH 440
Query: 192 LSKDPSGNYVVQHVLGLGDLKYSE-KICSLLKGKFEELSLLRCGSHLVEKYQR------- 243
LS+DP GNYVVQ+++ D + S K+ + + EL+ + SH++EK R
Sbjct: 441 LSQDPFGNYVVQYLI---DQQVSAVKLLVQFRMHYAELATQKFSSHVIEKCLRKYPESRA 497
Query: 244 ---------PSIFTPCQHKYGNFVIQQALRVTKG 268
P+ Q Y N+VIQ AL VTKG
Sbjct: 498 EIVRELLCVPNFEYLLQDPYANYVIQTALSVTKG 531
>sp|Q9FIE9|PUM16_ARATH Putative pumilio homolog 16 OS=Arabidopsis thaliana GN=APUM16 PE=3
SV=2
Length = 332
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 96/197 (48%), Gaps = 21/197 (10%)
Query: 90 ARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAA 149
++++QKL+ + A R F +M K AS V I+ + + K E++Y
Sbjct: 97 SKTLQKLMGM--SDDMDVFFFEAIMRLFIHVMTDKYASYVTIQGMRVFQQDKRELMYDQI 154
Query: 150 MNHFRELATHVRGCVSLNNFINEMRGPR-RGGLLDLISSHAEFLSKDPSGNYVVQHVLGL 208
+ + LA GC++LN I ++ P R LLD+++++A LS D GN+VVQHVL L
Sbjct: 155 LRYACFLAGDQYGCIALNEIITDLDDPYYRDQLLDIVANNALLLSNDAYGNFVVQHVLKL 214
Query: 209 GDLKYSEKICSLLKGKFEELSLLRCGSHLVEKY------------------QRPSIFTPC 250
D + + I L G ELS + GS++VE+ + +
Sbjct: 215 RDSRCTRNIADKLCGYCVELSFKKYGSYIVERLLEAGDVPMATVVLDLLACKTEMLIRLA 274
Query: 251 QHKYGNFVIQQALRVTK 267
+ +YGNFV+ +AL +T
Sbjct: 275 RSEYGNFVVCKALELTN 291
>sp|Q9C8B8|PUM17_ARATH Putative pumilio homolog 17 OS=Arabidopsis thaliana GN=APUM17 PE=5
SV=2
Length = 332
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 83/152 (54%), Gaps = 3/152 (1%)
Query: 90 ARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAA 149
++S+QKL+++ V A R F +M K AS V I+ + + K E++Y
Sbjct: 97 SKSLQKLMRMSDDMDVFFFV--AIMRLFIHVMIDKYASYVAIQGMRIFKQDKRELMYDHI 154
Query: 150 MNHFRELATHVRGCVSLNNFINEMRGPR-RGGLLDLISSHAEFLSKDPSGNYVVQHVLGL 208
+ + LA GC++LN I E+ P R L+D++S++A LS D GN+VVQHVL L
Sbjct: 155 LRYALFLARDQYGCIALNEIIKELDDPYYRDELMDIVSNNALLLSNDAYGNFVVQHVLKL 214
Query: 209 GDLKYSEKICSLLKGKFEELSLLRCGSHLVEK 240
D + + I L G ELS + GS++VE+
Sbjct: 215 HDSRCTGNIADKLCGYCVELSFKKYGSYIVER 246
>sp|Q9XI17|PUM20_ARATH Putative pumilio homolog 20 OS=Arabidopsis thaliana GN=APUM20 PE=5
SV=2
Length = 332
Score = 82.0 bits (201), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 64/234 (27%), Positives = 117/234 (50%), Gaps = 38/234 (16%)
Query: 85 YGCHLARSM---QKLIKLLVGSPCISLVISAA-YRRFKDMMFSKEASSVIIKCLETLDEQ 140
Y +AR+M +++ KLL + + + +AA RRF ++ K AS V+ + + D++
Sbjct: 93 YFLMIARNMNGSKRIQKLLGKTDDVDALFAAAILRRFLHIITDKYASYVVRRGMTVFDKK 152
Query: 141 KNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNY 200
K + +Y +++ +A G ++LN+ I + R L D+I+ A LS D GN+
Sbjct: 153 KKKAMYEHILHYASHIARDKHGNLALNDIITD---AYRNKLFDVIAHKALVLSNDAYGNF 209
Query: 201 VVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVE-----------------KYQR 243
V+Q VL L DL+ I L+G F +LS + GS++V+ + +
Sbjct: 210 VIQRVLKLNDLRSKNNIVVSLRGHFVDLSFQKYGSYVVDVLLETKESMVVVVEELMECEG 269
Query: 244 PSIFTPCQHKYGNFVIQQALRVTKGFQMTERNIIQELGQSSFIQGIV----PFN 293
+ +++YGNF++ +ALRVT+ +E+ ++ G+V PF+
Sbjct: 270 DMLMRLARNEYGNFLVCKALRVTQ----------KEMVRTDLFWGLVHKLKPFH 313
>sp|Q9LDW3|PUM11_ARATH Pumilio homolog 11 OS=Arabidopsis thaliana GN=APUM11 PE=3 SV=2
Length = 556
Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 70/248 (28%), Positives = 114/248 (45%), Gaps = 22/248 (8%)
Query: 40 DIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKL 99
+++ LG G+ +QK++ + +I + P L+ + R +QKLI+
Sbjct: 281 NVIELGTDPFGNYLIQKLIEVCNEEQRTQILIRLTSKPGLLVKISINNYGTRVVQKLIET 340
Query: 100 LVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATH 159
+ ISLV SA F + + VI+ CL+ N+ + AA E+AT
Sbjct: 341 VTTKEQISLVKSALVPGFLSLFRELNGNHVILNCLKFFSPNDNKFILEAATKFCIEIATT 400
Query: 160 VRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVL--GLGDLKYSEKI 217
GC L ++ G + L+D IS ++ L++DP GNY+VQ+++ +G + +
Sbjct: 401 RHGCCVLQRCVSYSVGEQHEKLVDEISRNSLLLAQDPFGNYLVQYIIEKKVGGV----NV 456
Query: 218 CSLLKGKFEELSLLRCGSHLVEK------YQRPSIFTP----------CQHKYGNFVIQQ 261
L+G + +L+ + GSH+VEK R I Q Y N+VIQ
Sbjct: 457 LFELRGNYVKLATQKFGSHVVEKCLRYYPESRSQIVNELVSVLNFGYLLQDPYANYVIQC 516
Query: 262 ALRVTKGF 269
AL TKGF
Sbjct: 517 ALSKTKGF 524
>sp|P25339|PUF4_YEAST Pumilio homology domain family member 4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=PUF4 PE=1 SV=2
Length = 888
Score = 77.8 bits (190), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 126/293 (43%), Gaps = 59/293 (20%)
Query: 31 NALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHL- 89
+A+L Q I L K + G FLQK L S IFE Y +LMTD +G +L
Sbjct: 558 DAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLI 617
Query: 90 --------------------------------ARSMQKLIKLLVGSPCISLVISAAYRRF 117
R++QKLI+ + +V+ + R
Sbjct: 618 QKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSL--RP 675
Query: 118 KDMMFSKE--ASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRG 175
+ SK+ + VI KCL+ L + + ++ A + ++ATH GC L ++
Sbjct: 676 YTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGTT 735
Query: 176 PRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLK----YSEKICSLLKGKFEELSLL 231
+ L D + + + L+ DP GNYVVQ+++ K Y+ KI LLK + ELS+
Sbjct: 736 EQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIH 795
Query: 232 RCGSHLVEKYQRPSIFTP------------------CQHKYGNFVIQQALRVT 266
+ GS+++EK + +I + YGN+V+Q AL ++
Sbjct: 796 KFGSNVIEKILKTAIVSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDIS 848
>sp|Q9LP21|PUM10_ARATH Putative pumilio homolog 10 OS=Arabidopsis thaliana GN=APUM10 PE=3
SV=2
Length = 528
Score = 74.7 bits (182), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 72/245 (29%), Positives = 107/245 (43%), Gaps = 20/245 (8%)
Query: 41 IVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLL 100
+V L G+ +QK+L D I + P +L+ + R +QK+IK +
Sbjct: 254 VVELSMDPLGNYIVQKLLVVSDEEQRTMIVSVLTSKPRELIKICLNTNGTRVIQKMIKTV 313
Query: 101 VGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHV 160
I+LV SA F ++ V+ CLE L N+ + AA + +LATH
Sbjct: 314 KTKQQIALVKSALEPGFLVLVNDSNGYHVLQSCLEFLVPNDNKFVVEAATEYCAQLATHQ 373
Query: 161 RGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSE-KICS 219
GC L + G + L+ IS + LS+DP GNYVVQ ++ D + S +
Sbjct: 374 YGCYVLQCSLINTVGLQHERLVAEISRDSLRLSQDPFGNYVVQCLI---DQQVSSVNLLL 430
Query: 220 LLKGKFEELSLLRCGSHLVEKYQR----------------PSIFTPCQHKYGNFVIQQAL 263
+ EL+ + SH++EK R P+ Q Y N+VIQ AL
Sbjct: 431 PFRTHCIELATQKFSSHVIEKCLRKYPESRAEIVRELLSYPNFEQLLQDPYANYVIQTAL 490
Query: 264 RVTKG 268
VTKG
Sbjct: 491 SVTKG 495
Score = 35.4 bits (80), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 12/73 (16%)
Query: 162 GCVSLNNFINEMRGPRRGGLLDL------ISSHAEFLSKDPSGNYVVQHVLGLGDLKYSE 215
GC +L + E G +LD I H LS DP GNY+VQ +L + D +
Sbjct: 227 GCRALQKLVEE------GTVLDSKVIFLEIIDHVVELSMDPLGNYIVQKLLVVSDEEQRT 280
Query: 216 KICSLLKGKFEEL 228
I S+L K EL
Sbjct: 281 MIVSVLTSKPREL 293
>sp|Q92359|YDHE_SCHPO Pumilio domain-containing protein C6G9.14 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC6G9.14 PE=4 SV=1
Length = 681
Score = 68.9 bits (167), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 57/238 (23%), Positives = 105/238 (44%), Gaps = 37/238 (15%)
Query: 38 DYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHL-------- 89
+ +I+ K + G +LQ++L K+ + +F + Y LM D +G +L
Sbjct: 345 NSNILSFCKDQHGCRYLQRLLEKKNQSHIDAVFAETHPYLAVLMVDAFGNYLCQKLFEHA 404
Query: 90 -------------------------ARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSK 124
R++QK+I L+ IS +++A R ++ +K
Sbjct: 405 SEAQRSTFIQIIAPKLVPISFNMHGTRALQKIIDLVSSPDQISCIVNAL--RPNVVLLTK 462
Query: 125 E--ASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLL 182
+ + VI KCL ++ + ++ A +++TH GC + + + L+
Sbjct: 463 DLNGNHVIQKCLNKFSQEDCQFIFDAICEDPLDVSTHRHGCCVVQRCFDHASPAQIEQLV 522
Query: 183 DLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK 240
+ I HA L +D GNYV+Q+VL L + ++E I S K LS + S+++EK
Sbjct: 523 EHIVPHALTLVQDAFGNYVLQYVLELNNPNHTEAIISYFLYKVRALSTQKFSSNVMEK 580
>sp|Q09829|YAD3_SCHPO Pumilio domain-containing protein C4G8.03c OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC4G8.03c PE=4 SV=1
Length = 780
Score = 68.6 bits (166), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 20/209 (9%)
Query: 79 DLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLD 138
D+ ++ YG RSMQ +I L + ISL++ + + V+ KC+
Sbjct: 541 DICSNLYG---TRSMQNIIDKLTSNEQISLLLKIIIPSLTTLACDNNGTHVLQKCIAKFP 597
Query: 139 EQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSG 198
+K E L+L+ + LAT+ GC L ++ G + L++ I L ++ G
Sbjct: 598 PEKLEPLFLSMEENLITLATNRHGCCILQRCLDRTNGDIQERLVNSIIKSCLLLVQNAYG 657
Query: 199 NYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEKYQR--------------- 243
NY+VQHVL L Y+E+I G +LSL + S+ +E+ R
Sbjct: 658 NYLVQHVLELNIQPYTERIIEKFFGNICKLSLQKFSSNAIEQCIRTASPSTREQMLQEFL 717
Query: 244 --PSIFTPCQHKYGNFVIQQALRVTKGFQ 270
P+I Y N+V+Q+ L V Q
Sbjct: 718 SFPNIEQLLDDCYANYVMQRFLNVADESQ 746
>sp|Q8TB72|PUM2_HUMAN Pumilio homolog 2 OS=Homo sapiens GN=PUM2 PE=1 SV=2
Length = 1066
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 113/293 (38%), Gaps = 59/293 (20%)
Query: 41 IVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSM------- 93
IV + + GS F+Q+ L +F + + + LMTD +G ++ +
Sbjct: 731 IVEFSQDQHGSRFIQQKLERATPAERQMVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLD 790
Query: 94 QKLI-----------------------KLLVGSPCISLVISAAYRRFKDMMF----SKEA 126
QKL K L VIS + + +
Sbjct: 791 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNG 850
Query: 127 SSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLIS 186
+ V+ KC+E + Q + + A L+TH GC + + + +L+ +
Sbjct: 851 NHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELH 910
Query: 187 SHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEKY----- 241
H E L +D GNYV+QHVL G + KI S ++GK LS + S++VEK
Sbjct: 911 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHAS 970
Query: 242 -----------------QRPSIFTPCQHKYGNFVIQQALRVTKGFQMTERNII 277
+++T + +Y N+V+Q+ + + + Q R II
Sbjct: 971 RAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQ---RKII 1020
>sp|Q80U58|PUM2_MOUSE Pumilio homolog 2 OS=Mus musculus GN=Pum2 PE=1 SV=2
Length = 1066
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 113/293 (38%), Gaps = 59/293 (20%)
Query: 41 IVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSM------- 93
IV + + GS F+Q+ L +F + + + LMTD +G ++ +
Sbjct: 731 IVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLD 790
Query: 94 QKLI-----------------------KLLVGSPCISLVISAAYRRFKDMMF----SKEA 126
QKL K L VIS + + +
Sbjct: 791 QKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQVISEMVKELDGHVLKCVKDQNG 850
Query: 127 SSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLIS 186
+ V+ KC+E + Q + + A L+TH GC + + + +L+ +
Sbjct: 851 NHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELH 910
Query: 187 SHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEKY----- 241
H E L +D GNYV+QHVL G + KI S ++GK LS + S++VEK
Sbjct: 911 QHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHAS 970
Query: 242 -----------------QRPSIFTPCQHKYGNFVIQQALRVTKGFQMTERNII 277
+++T + +Y N+V+Q+ + + + Q R II
Sbjct: 971 RAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQ---RKII 1020
>sp|Q80U78|PUM1_MOUSE Pumilio homolog 1 OS=Mus musculus GN=Pum1 PE=1 SV=2
Length = 1189
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 100/247 (40%), Gaps = 32/247 (12%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + E + + L YGC R +QK ++ + P V
Sbjct: 899 GNYVIQKFFEFGSHEQKLALAERIRGHVLSLALQMYGC---RVIQKALEFI---PSDQQV 952
Query: 110 ISAAYRRFKDMMF----SKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVS 165
I+ R + + + V+ KC+E + Q + + A L+TH GC
Sbjct: 953 INEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFALSTHPYGCRV 1012
Query: 166 LNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKF 225
+ + + +L+ + H E L +D GNYV+QHVL G + KI + ++G
Sbjct: 1013 IQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNV 1072
Query: 226 EELSLLRCGSHLVEKY----------------------QRPSIFTPCQHKYGNFVIQQAL 263
LS + S++VEK +++T + +Y N+V+Q+ +
Sbjct: 1073 LVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMI 1132
Query: 264 RVTKGFQ 270
V + Q
Sbjct: 1133 DVAEPGQ 1139
>sp|P25822|PUM_DROME Maternal protein pumilio OS=Drosophila melanogaster GN=pum PE=1 SV=2
Length = 1533
Score = 59.7 bits (143), Expect = 2e-08, Method: Composition-based stats.
Identities = 60/287 (20%), Positives = 112/287 (39%), Gaps = 57/287 (19%)
Query: 41 IVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKL- 99
IV + + GS F+Q+ L + +F + + LMTD +G ++ +QK +
Sbjct: 1116 IVEFSQDQHGSRFIQQKLERATAAEKQMVFSEILAAAYSLMTDVFGNYV---IQKFFEFG 1172
Query: 100 ------LVGSPCISLVISAAYRRFKDMMFSKEASS------------------------- 128
+G V+ A + + + K S
Sbjct: 1173 TPEQKNTLGMQVKGHVLQLALQMYGCRVIQKALESISPEQQQEIVHELDGHVLKCVKDQN 1232
Query: 129 ---VIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLI 185
V+ KC+E +D + + A L+TH GC + + + +LD +
Sbjct: 1233 GNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGCRVIQRILEHCTAEQTTPILDEL 1292
Query: 186 SSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK----- 240
H E L +D GNYV+QHVL G + + + ++GK LS + S++VEK
Sbjct: 1293 HEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNVVEKCVTHA 1352
Query: 241 --------------YQRPSIFTPCQHKYGNFVIQQALRVTKGFQMTE 273
+ ++ + +Y N+V+Q+ + V++ Q+ +
Sbjct: 1353 TRGERTGLIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQLKK 1399
Score = 34.3 bits (77), Expect = 1.1, Method: Composition-based stats.
Identities = 44/209 (21%), Positives = 86/209 (41%), Gaps = 23/209 (11%)
Query: 46 KTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPC 105
K + G+ +QK + D I A + L T YGC R +Q++++
Sbjct: 1229 KDQNGNHVVQKCIECVDPVALQFIINAFKGQVYSLSTHPYGC---RVIQRILEHCTAEQ- 1284
Query: 106 ISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATH------ 159
+ ++ + + ++ + + VI LE ++ +L + L+ H
Sbjct: 1285 TTPILDELHEHTEQLIQDQYGNYVIQHVLEHGKQEDKSILINSVRGKVLVLSQHKFASNV 1344
Query: 160 VRGCVSLNNFINEMRGPRRGGLLDLISSHAE----FLSKDPSGNYVVQHVLGLGDLKYSE 215
V CV+ + RG R GL+D + + + + KD NYVVQ ++ + + +
Sbjct: 1345 VEKCVT-----HATRG-ERTGLIDEVCTFNDNALHVMMKDQYANYVVQKMIDVSEPTQLK 1398
Query: 216 KICSLLKGKFEELSLLRCGSHL---VEKY 241
K+ + ++ L G H+ +EKY
Sbjct: 1399 KLMTKIRPHMAALRKYTYGKHINAKLEKY 1427
>sp|Q9ZW07|PUM1_ARATH Pumilio homolog 1 OS=Arabidopsis thaliana GN=APUM1 PE=1 SV=1
Length = 968
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 86/192 (44%), Gaps = 15/192 (7%)
Query: 53 FLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVIS- 111
F + L + + K+F+ V P L YGC R +QK I+++ I +V
Sbjct: 687 FFEHGLPPQRRELAEKLFDHVL--PLSLQM--YGC---RVIQKAIEVVDLDQKIKMVKEL 739
Query: 112 --AAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
R +D + + V+ KC+E + E+ E + H L+TH GC +
Sbjct: 740 DGHVMRCVRD----QNGNHVVQKCIECVPEENIEFIISTFFGHVVTLSTHPYGCRVIQRV 795
Query: 170 INEMRGPR-RGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEEL 228
+ P + +++ I S L++D GNYVVQHVL G I L GK ++
Sbjct: 796 LEHCHDPDTQSKVMEEILSTVSMLAQDQYGNYVVQHVLEHGKPDERTVIIKELAGKIVQM 855
Query: 229 SLLRCGSHLVEK 240
S + S++VEK
Sbjct: 856 SQQKFASNVVEK 867
>sp|Q2VB19|PUM1_CHICK Pumilio homolog 1 OS=Gallus gallus GN=PUM1 PE=2 SV=1
Length = 1189
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 90/212 (42%), Gaps = 32/212 (15%)
Query: 85 YGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMF----SKEASSVIIKCLETLDEQ 140
YGC R +QK ++ + P VI+ R + + + V+ KC+E + Q
Sbjct: 934 YGC---RVIQKALEFI---PPDQQVINEMVRELDGHVLKCVKDQNGNHVVQKCIECVQPQ 987
Query: 141 KNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNY 200
+ + A L+TH GC + + + +L+ + H E L +D GNY
Sbjct: 988 SLQFIIDAFKGQVFALSTHPYGCRVIQRILEHCLPEQTLPILEELHQHTEQLVQDQYGNY 1047
Query: 201 VVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEKY------------------- 241
V+QHVL G + KI + ++G LS + S++VEK
Sbjct: 1048 VIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAMLIDEVCTM 1107
Query: 242 ---QRPSIFTPCQHKYGNFVIQQALRVTKGFQ 270
+++T + +Y N+V+Q+ + V + Q
Sbjct: 1108 NDGPHSALYTMMKDQYANYVVQKMIDVAEPAQ 1139
>sp|Q9ZW06|PUM2_ARATH Pumilio homolog 2 OS=Arabidopsis thaliana GN=APUM2 PE=1 SV=1
Length = 972
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 53/192 (27%), Positives = 86/192 (44%), Gaps = 15/192 (7%)
Query: 53 FLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVIS- 111
F + L + + K+F+ V P L YGC R +QK I+++ I +V
Sbjct: 691 FFEHGLPPQRRELADKLFDNVL--PLSLQM--YGC---RVIQKAIEVVDLDQKIKMVKEL 743
Query: 112 --AAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNF 169
R +D + + V+ KC+E + E+ E + + L+TH GC +
Sbjct: 744 DGHVMRCVRD----QNGNHVVQKCIECVPEENIEFIISTFFGNVVTLSTHPYGCRVIQRV 799
Query: 170 INEMRGPR-RGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEEL 228
+ P + ++D I S L++D GNYV+QHVL G I L GK ++
Sbjct: 800 LEHCHDPDTQSKVMDEIMSTISMLAQDQYGNYVIQHVLEHGKPDERTVIIKELAGKIVQM 859
Query: 229 SLLRCGSHLVEK 240
S + S++VEK
Sbjct: 860 SQQKFASNVVEK 871
Score = 33.9 bits (76), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 47/115 (40%)
Query: 126 ASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLI 185
S I + LET + ++Y M H L T V G + F P+R L D +
Sbjct: 648 GSRFIQQKLETATSDEKNMVYEEIMPHALALMTDVFGNYVIQKFFEHGLPPQRRELADKL 707
Query: 186 SSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK 240
+ LS G V+Q + + DL K+ L G + G+H+V+K
Sbjct: 708 FDNVLPLSLQMYGCRVIQKAIEVVDLDQKIKMVKELDGHVMRCVRDQNGNHVVQK 762
>sp|Q9ZW02|PUM3_ARATH Pumilio homolog 3 OS=Arabidopsis thaliana GN=APUM3 PE=1 SV=1
Length = 964
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 85 YGCHLARSMQKLIKLLVGSPCISLVIS---AAYRRFKDMMFSKEASSVIIKCLETLDEQK 141
YGC R +QK I+++ I +V R +D + + V+ KC+E + E+
Sbjct: 711 YGC---RVIQKAIEVVDLDQKIQMVKELDGHVMRCVRD----QNGNHVVQKCIECVPEEN 763
Query: 142 NEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGP-RRGGLLDLISSHAEFLSKDPSGNY 200
E + H L+TH GC + + P + +++ I S L++D GNY
Sbjct: 764 IEFIISTFFGHVVTLSTHPYGCRVIQRVLEHCHNPDTQSKVMEEILSTVSMLTQDQYGNY 823
Query: 201 VVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK 240
VVQHVL G I L GK ++S + S++VEK
Sbjct: 824 VVQHVLEHGKPDERTVIIKELAGKIVQMSQQKFASNVVEK 863
>sp|Q5R5X3|PUM1_PONAB Pumilio homolog 1 OS=Pongo abelii GN=PUM1 PE=2 SV=1
Length = 1186
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 26/208 (12%)
Query: 85 YGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEV 144
YGC R +QK ++ + +V K + + + V+ KC+E + Q +
Sbjct: 933 YGC---RVIQKALEFIPSDQQNEMVRELDGHVLK-CVKDQNGNHVVQKCIECVQPQSLQF 988
Query: 145 LYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQH 204
+ A L+TH GC + + + +L+ + H E L +D GNYV+QH
Sbjct: 989 IIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQH 1048
Query: 205 VLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEKY----------------------Q 242
VL G + KI + ++G LS + S++VEK
Sbjct: 1049 VLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGP 1108
Query: 243 RPSIFTPCQHKYGNFVIQQALRVTKGFQ 270
+++T + +Y N+V+Q+ + V + Q
Sbjct: 1109 HSALYTMMKDQYANYVVQKMIDVAEPGQ 1136
Score = 33.1 bits (74), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 89/241 (36%), Gaps = 59/241 (24%)
Query: 41 IVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLL 100
I+ + + GS F+Q L +F + + + LM D +G ++ +QK +
Sbjct: 853 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYV---IQKFFEF- 908
Query: 101 VGSPCISLVISAAYR-RFKDMMFSKEASSVIIKCLETL-DEQKNEVLYLAAMNHFRELAT 158
GS L ++ R + VI K LE + +Q+NE++ REL
Sbjct: 909 -GSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMV--------RELDG 959
Query: 159 HVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKIC 218
HV CV KD +GN+VVQ + + + I
Sbjct: 960 HVLKCV-----------------------------KDQNGNHVVQKCIECVQPQSLQFII 990
Query: 219 SLLKGKFEELSLLRCGSHLVEK---YQRPSIFTP------------CQHKYGNFVIQQAL 263
KG+ LS G ++++ + P P Q +YGN+VIQ L
Sbjct: 991 DAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVL 1050
Query: 264 R 264
Sbjct: 1051 E 1051
>sp|Q14671|PUM1_HUMAN Pumilio homolog 1 OS=Homo sapiens GN=PUM1 PE=1 SV=3
Length = 1186
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 26/208 (12%)
Query: 85 YGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEV 144
YGC R +QK ++ + +V K + + + V+ KC+E + Q +
Sbjct: 933 YGC---RVIQKALEFIPSDQQNEMVRELDGHVLK-CVKDQNGNHVVQKCIECVQPQSLQF 988
Query: 145 LYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQH 204
+ A L+TH GC + + + +L+ + H E L +D GNYV+QH
Sbjct: 989 IIDAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQH 1048
Query: 205 VLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEKY----------------------Q 242
VL G + KI + ++G LS + S++VEK
Sbjct: 1049 VLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEKCVTHASRTERAVLIDEVCTMNDGP 1108
Query: 243 RPSIFTPCQHKYGNFVIQQALRVTKGFQ 270
+++T + +Y N+V+Q+ + V + Q
Sbjct: 1109 HSALYTMMKDQYANYVVQKMIDVAEPGQ 1136
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 89/241 (36%), Gaps = 59/241 (24%)
Query: 41 IVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLL 100
I+ + + GS F+Q L +F + + + LM D +G ++ +QK +
Sbjct: 853 IMEFSQDQHGSRFIQLKLERATPAERQLVFNEILQAAYQLMVDVFGNYV---IQKFFEF- 908
Query: 101 VGSPCISLVISAAYR-RFKDMMFSKEASSVIIKCLETL-DEQKNEVLYLAAMNHFRELAT 158
GS L ++ R + VI K LE + +Q+NE++ REL
Sbjct: 909 -GSLEQKLALAERIRGHVLSLALQMYGCRVIQKALEFIPSDQQNEMV--------RELDG 959
Query: 159 HVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKIC 218
HV CV KD +GN+VVQ + + + I
Sbjct: 960 HVLKCV-----------------------------KDQNGNHVVQKCIECVQPQSLQFII 990
Query: 219 SLLKGKFEELSLLRCGSHLVEK---YQRPSIFTP------------CQHKYGNFVIQQAL 263
KG+ LS G ++++ + P P Q +YGN+VIQ L
Sbjct: 991 DAFKGQVFALSTHPYGCRVIQRILEHCLPDQTLPILEELHQHTEQLVQDQYGNYVIQHVL 1050
Query: 264 R 264
Sbjct: 1051 E 1051
>sp|O81465|PUM15_ARATH Pumilio homolog 15 OS=Arabidopsis thaliana GN=APUM15 PE=3 SV=1
Length = 477
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 100/245 (40%), Gaps = 29/245 (11%)
Query: 49 GGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISL 108
G +F + M D IT ++ + V + PF+ + H ++Q L++ L IS
Sbjct: 200 GHKVFRKLMEKCTDEQIT-RVLDIVLEEPFEFVRLCVHTHGTHAIQGLMRSLCSEEQISR 258
Query: 109 VISAAYRRFKDMMFSKE--ASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSL 166
+ + ++ +K+ A VI+ C L + + ++A GC L
Sbjct: 259 FMETLC--YVSLLLTKDVIAHRVILFCFNQFSPSHTRYLLEVIVQNCYQVAIDQNGCCML 316
Query: 167 NNFINEMRGPRRGGLLDLISSHAEFLSKDPSG----------NYVVQHVLGLGDLKYSEK 216
I + R L+ I S A L + G NYVVQ++L L D + +
Sbjct: 317 KKLIRQSSRELRDPLIKEIISIAVRLCGNCYGTLTPKSLLVRNYVVQYLLRLKDYEVTSA 376
Query: 217 ICSLLKGKFEELSLLRCGSHLVEKYQRPSIFTPCQ--------------HKYGNFVIQQA 262
+ L G + +LS + GSH+V+K F+ + YG++VIQ A
Sbjct: 377 LSKHLDGNYVQLSYDKYGSHVVQKCLESREFSSRRIIAELLSDIDSLLVDPYGDYVIQTA 436
Query: 263 LRVTK 267
V++
Sbjct: 437 WIVSE 441
>sp|Q9C5E7|PUM6_ARATH Pumilio homolog 6, chloroplastic OS=Arabidopsis thaliana GN=APUM6
PE=1 SV=1
Length = 861
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 81/195 (41%), Gaps = 11/195 (5%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK +ST ++ + + L YGC R +QK + ++ + L
Sbjct: 582 GNYVIQKFFEYGNSTQRKELADQLMGQIVPLSLQMYGC---RVIQKALDVIEPDQRVRLA 638
Query: 110 IS---AAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSL 166
R +D + + VI KC+E + K + A L+ H GC +
Sbjct: 639 RELDGQVMRCVRD----QNGNHVIQKCIENIPADKVGFMLYAFRGQVSSLSMHPYGCRVI 694
Query: 167 NNFINEMRGPRRGGLL-DLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKF 225
+ + + + I LSKD GNYV QHVL G + E+I L G
Sbjct: 695 QRLLERCSHDHQCRFITEEILESVCVLSKDQYGNYVTQHVLEKGTSEERERIGRKLSGHI 754
Query: 226 EELSLLRCGSHLVEK 240
+LSL + S+++EK
Sbjct: 755 VQLSLHKFASNVIEK 769
>sp|Q9FMH4|PUM13_ARATH Putative pumilio homolog 13 OS=Arabidopsis thaliana GN=APUM13 PE=3
SV=1
Length = 527
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 17/162 (10%)
Query: 123 SKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPR---RG 179
+ A VI+ C + L H ++A GC L ++ R P R
Sbjct: 333 NTNAKYVILACFRMFTSSQCRRLLEVVSQHCYQIAIDQNGCCLLQQCFDKERVPNHEIRQ 392
Query: 180 GLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVE 239
L+ + HA L + GNYVVQ+V+ L + ++ + + L + L+ + GSH+V+
Sbjct: 393 RLISEVIEHALKLCLNCHGNYVVQYVVELDNQHETDLLVNKLLRNYAHLARNKYGSHVVQ 452
Query: 240 KYQR--------------PSIFTPCQHKYGNFVIQQALRVTK 267
K + I T +GN+VIQ A V+K
Sbjct: 453 KLLKLRGIDSKLIVVDLLRGIDTLLLDPFGNYVIQTAWFVSK 494
>sp|Q9LJX4|PUM5_ARATH Pumilio homolog 5 OS=Arabidopsis thaliana GN=APUM5 PE=1 SV=2
Length = 961
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/285 (21%), Positives = 105/285 (36%), Gaps = 56/285 (19%)
Query: 41 IVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSM------- 93
+V + GS F+Q+ L +F V LMTD +G ++ +
Sbjct: 633 VVEFSVDQHGSRFIQQKLEHCSDEEKASVFSEVLPQASKLMTDVFGNYVIQKFIEHGTPA 692
Query: 94 --QKLIKLLVGSPCISL--------VISAAY------------RRFKDMMF----SKEAS 127
++L+K L G +SL VI A R + + +
Sbjct: 693 QREELVKQLAGQ-MVSLSLQMYGCRVIQKALEVIDVDQKTELIRELDGNVLKCVRDQNGN 751
Query: 128 SVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGG-LLDLIS 186
VI KC+E++ + + A L+TH GC + + ++D I
Sbjct: 752 HVIQKCIESMPAGRIGFVIAAFRGQVATLSTHPYGCRVIQRILEHCSDDEETHCIIDEIL 811
Query: 187 SHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK------ 240
A L+ D GNYV QHVL G +I L G ++S + S++VEK
Sbjct: 812 ESAFALAHDQYGNYVTQHVLERGKPDERRQIIEKLTGNVVQMSQHKYASNVVEKCLEHAD 871
Query: 241 ---------------YQRPSIFTPCQHKYGNFVIQQALRVTKGFQ 270
+ + + ++ N+V+Q+ L ++K Q
Sbjct: 872 STEREFLIEEIMGKSEEDNHLLAMMKDQFANYVVQKVLEISKDQQ 916
>sp|Q9SS47|PUM4_ARATH Pumilio homolog 4 OS=Arabidopsis thaliana GN=APUM4 PE=1 SV=2
Length = 1003
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 87/194 (44%), Gaps = 9/194 (4%)
Query: 50 GSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLV 109
G+ +QK + ++ E V + L YGC + + ++++L + + +
Sbjct: 714 GNYVIQKFFEHGTTKQRKELAEQVTGHVLALSLQMYGCRVIQKALEVVELEQQARMVKEL 773
Query: 110 ISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLN-- 167
+ + D + + VI KC+E L + + + + L+TH GC +
Sbjct: 774 DGSVMKCVHD----QNGNHVIQKCIERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRV 829
Query: 168 -NFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFE 226
I+++ R +++ I L++D GNYV+QH++ G +I + L G+
Sbjct: 830 LEHIDDIETQRI--IMEEIMDSVCTLAQDQYGNYVIQHIIQHGKPHERSEIINKLAGQIV 887
Query: 227 ELSLLRCGSHLVEK 240
++S + S++VEK
Sbjct: 888 KMSQQKFASNVVEK 901
Score = 34.7 bits (78), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 26/177 (14%)
Query: 127 SSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLIS 186
S I + LET +++ ++ + + R L T V G + F +R L + ++
Sbjct: 679 SRFIQQKLETATDEEKNAIFPEILPYGRTLMTDVFGNYVIQKFFEHGTTKQRKELAEQVT 738
Query: 187 SHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRC-----GSHLVEK- 240
H LS G V+Q L + +L+ ++ L G S+++C G+H+++K
Sbjct: 739 GHVLALSLQMYGCRVIQKALEVVELEQQARMVKELDG-----SVMKCVHDQNGNHVIQKC 793
Query: 241 -YQRPS-------------IFTPCQHKYGNFVIQQALRVTKGFQMTERNIIQELGQS 283
+ P + H YG VIQ+ L + T+R I++E+ S
Sbjct: 794 IERLPQDWIQFIISSFYGKVLALSTHPYGCRVIQRVLEHIDDIE-TQRIIMEEIMDS 849
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 78/196 (39%), Gaps = 37/196 (18%)
Query: 50 GSLFLQKMLSGKDSTITYKI-FEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPC-IS 107
G +Q++L D T +I E + L D YG ++ +Q +I+ G P S
Sbjct: 822 GCRVIQRVLEHIDDIETQRIIMEEIMDSVCTLAQDQYGNYV---IQHIIQH--GKPHERS 876
Query: 108 LVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLN 167
+I+ + M K AS+V+ KCL ++ +VL
Sbjct: 877 EIINKLAGQIVKMSQQKFASNVVEKCLTFGGPEERQVL---------------------- 914
Query: 168 NFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEE 227
+NEM G + + + KDP GNYVVQ VL D + I S +K
Sbjct: 915 --VNEMLG------YTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLALILSRIKVHLNA 966
Query: 228 LSLLRCGSHLVEKYQR 243
L G H+V + ++
Sbjct: 967 LKRYTYGKHIVARVEK 982
>sp|O94462|PUF3_SCHPO mRNA-binding protein puf3 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=puf3 PE=2 SV=4
Length = 732
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 70/163 (42%), Gaps = 5/163 (3%)
Query: 78 FDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETL 137
F L YGC R +QK I+ + + L I D + + + VI K +E +
Sbjct: 475 FSLSLQMYGC---RVVQKAIEYISPEHQVQL-IQELDGHVLDCVCDQNGNHVIQKAIECI 530
Query: 138 DEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPS 197
D + + A L+ H GC + I R+ + +L+ H L++D
Sbjct: 531 DTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIEHCHSERKLIIEELLP-HILKLTQDQY 589
Query: 198 GNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEK 240
GNYVVQH+L G + I L+ LS + S++VE+
Sbjct: 590 GNYVVQHILRTGSESDKKYIFDLMIDHLLFLSCHKFASNVVER 632
Score = 38.1 bits (87), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 63/151 (41%), Gaps = 14/151 (9%)
Query: 129 VIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSH 188
V+ K E +E++ ++L H L+ + GC + I + + L+ + H
Sbjct: 450 VVQKYFEFGNEKQKQILLSQIKGHVFSLSLQMYGCRVVQKAIEYISPEHQVQLIQELDGH 509
Query: 189 AEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEKY------Q 242
D +GN+V+Q + D + + I L+ + LS G ++++ +
Sbjct: 510 VLDCVCDQNGNHVIQKAIECIDTGHLQFILRALRPQIHVLSAHPYGCRVIQRAIEHCHSE 569
Query: 243 R--------PSIFTPCQHKYGNFVIQQALRV 265
R P I Q +YGN+V+Q LR
Sbjct: 570 RKLIIEELLPHILKLTQDQYGNYVVQHILRT 600
>sp|Q07807|PUF3_YEAST mRNA-binding protein PUF3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=PUF3 PE=1 SV=1
Length = 879
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 10/162 (6%)
Query: 85 YGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEV 144
Y C R +QK ++ + + I LV+ + + M+ + + VI K +ET+ +K
Sbjct: 623 YAC---RVIQKALEYIDSNQRIELVLELSDSVLQ-MIKDQNGNHVIQKAIETIPIEKLPF 678
Query: 145 LYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQH 204
+ + H L+TH GC + + + +L+ + +L +D GNYV+Q+
Sbjct: 679 ILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQY 738
Query: 205 VLGLGDLKYSE------KICSLLKGKFEELSLLRCGSHLVEK 240
VL E +I + E S + S++VEK
Sbjct: 739 VLQQDQFTNKEMVDIKQEIIETVANNVVEYSKHKFASNVVEK 780
>sp|P39016|MPT5_YEAST Suppressor protein MPT5 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MPT5 PE=1 SV=2
Length = 859
Score = 40.4 bits (93), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 91/205 (44%), Gaps = 19/205 (9%)
Query: 50 GSLFLQKM---LSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCI 106
G+ +QK+ L+ + T+ + + +Y F + + YG RS+QK+I + I
Sbjct: 262 GNYLVQKLCDYLTAEQKTL---LIQTIYPNVFQISINQYG---TRSLQKIIDTVDNEVQI 315
Query: 107 SLVISAAYRRFKD------MMFSKEASSVIIKCLETLDEQKNEVLYLAAM--NHFRELAT 158
L+I + F ++ + VI KC+ K + A + N+ ++T
Sbjct: 316 DLIIKGFSQEFTSIEQVVTLINDLNGNHVIQKCIFKFSPSKFGFIIDAIVEQNNIITIST 375
Query: 159 HVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYS--EK 216
H GC L ++ + + I L D GNY++Q +L + +L + +
Sbjct: 376 HKHGCCVLQKLLSVCTLQQIFKISVKIVQFLPGLINDQFGNYIIQFLLDIKELDFYLLAE 435
Query: 217 ICSLLKGKFEELSLLRCGSHLVEKY 241
+ + L + +LS L+ S++VEK+
Sbjct: 436 LFNRLSNELCQLSCLKFSSNVVEKF 460
>sp|Q4PSD1|PUM14_ARATH Pumilio homolog 14 OS=Arabidopsis thaliana GN=APUM14 PE=2 SV=1
Length = 518
Score = 39.3 bits (90), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 67/162 (41%), Gaps = 18/162 (11%)
Query: 123 SKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPR---RG 179
S A VI+ C +L L N ++A GC L N+ R P R
Sbjct: 325 SNHAIFVILACFRLFPLHCRLLLELIVQN-CHQIAIDQHGCCLLQLCFNKDRVPNLEIRQ 383
Query: 180 GLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVE 239
L+ ++A L + GNYVVQ+++ L + + + L G + L+ + GSH V+
Sbjct: 384 RLIMEAIANALRLCLNCYGNYVVQYIVELNNRYLIDALVRQLIGNYAHLARNKYGSHAVQ 443
Query: 240 KYQR--------------PSIFTPCQHKYGNFVIQQALRVTK 267
K + I T +GN+VIQ A V+K
Sbjct: 444 KLLKLRWIDSRVIVIDLLREIDTLLLDPFGNYVIQTAWFVSK 485
>sp|Q9LNI2|PUM22_ARATH Putative pumilio homolog 22 OS=Arabidopsis thaliana GN=APUM22 PE=3
SV=1
Length = 361
Score = 38.5 bits (88), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 9/119 (7%)
Query: 128 SVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGL------ 181
S++I+ + E+ ++V+ F ++ T+ G + I + +RG L
Sbjct: 147 SLMIQIILGKSEEVDQVILAGVKQRFIDVTTNFYGYRIMIQTIKVFK--KRGDLKVYDQI 204
Query: 182 LDLISSHAEFLSKDPS-GNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVE 239
L LI HA +L+KDP GN QH + L + I L+ + ELS L+ GS +VE
Sbjct: 205 LRLIGVHALYLTKDPDMGNKTFQHAINLHHQDCTTFIACGLQSHYIELSFLKHGSKIVE 263
Score = 34.7 bits (78), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 152 HFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDL 211
H L++ GCV L I + LDLI+ HA LS G ++QHVL L
Sbjct: 32 HLLVLSSDDNGCVILKKVITIADDFLKDEFLDLIAQHAHSLSMHDLGISLIQHVLELDFT 91
Query: 212 KYS---EKICSLLKGKFEEL 228
K + +K L +F+E+
Sbjct: 92 KKTTQDDKRLHELMAEFDEV 111
>sp|Q09312|FBF2_CAEEL Fem-3 mRNA-binding factor 2 OS=Caenorhabditis elegans GN=fbf-2 PE=1
SV=1
Length = 632
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 75/182 (41%), Gaps = 22/182 (12%)
Query: 79 DLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLD 138
D+ D + C + +S + + L + + + A R + + A+ VI K + +
Sbjct: 279 DMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDA--RLIAICVDQNANHVIQKVVAVIP 336
Query: 139 EQKNE--VLYLAAMNHFRELATHVRGC----------------VSLNNFINEMRGPRRGG 180
+ E V ++A H R++ + GC V L + +R
Sbjct: 337 LKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQR 396
Query: 181 LLDLISSHAEFLSKDPSGNYVVQHVLGLGDLK-YSEKICS-LLKGKFEELSLLRCGSHLV 238
L+ +++ + L+ + NY++QH++ DL Y E I L LS + SH+V
Sbjct: 397 LMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVV 456
Query: 239 EK 240
EK
Sbjct: 457 EK 458
>sp|C5G8V2|NOP9_AJEDR Nucleolar protein 9 OS=Ajellomyces dermatitidis (strain ER-3 / ATCC
MYA-2586) GN=NOP9 PE=3 SV=1
Length = 682
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 192 LSKDPSGNYVVQHVLGL--GDLKYSEKICSLLKGKFEELSLLRCGSHLVE 239
++KDP ++V+Q L L +++ +I S GK EL+L GSH+V+
Sbjct: 533 IAKDPVASHVLQDALTLPTSTIQFRRQITSRFSGKMAELALDSSGSHVVD 582
>sp|C5JK19|NOP9_AJEDS Nucleolar protein 9 OS=Ajellomyces dermatitidis (strain SLH14081)
GN=NOP9 PE=3 SV=1
Length = 682
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 192 LSKDPSGNYVVQHVLGL--GDLKYSEKICSLLKGKFEELSLLRCGSHLVE 239
++KDP ++V+Q L L +++ +I S GK EL+L GSH+V+
Sbjct: 533 IAKDPVASHVLQDALTLPTSTIQFRRQITSRFSGKMAELALDSSGSHVVD 582
>sp|Q9N5M6|FBF1_CAEEL Fem-3 mRNA-binding factor 1 OS=Caenorhabditis elegans GN=fbf-1 PE=1
SV=1
Length = 614
Score = 35.0 bits (79), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 74/182 (40%), Gaps = 22/182 (12%)
Query: 79 DLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLD 138
D+ D + C + +S + + L + + + A R + + A+ VI K + +
Sbjct: 277 DMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDA--RLIAICVDQNANHVIQKVVAVIP 334
Query: 139 EQKNE--VLYLAAMNHFRELATHVRGC----------------VSLNNFINEMRGPRRGG 180
+ E V ++A H R++ GC V L + +R
Sbjct: 335 LKNWEFIVDFVATPEHLRQICFDKYGCRVVQTIIEKLTADSINVDLTSAAQHLRERALQR 394
Query: 181 LLDLISSHAEFLSKDPSGNYVVQHVLGLGDLK-YSEKICS-LLKGKFEELSLLRCGSHLV 238
L+ +++ + L+ + NY++QH++ DL Y E I L LS + SH+V
Sbjct: 395 LMTSVTNRCQELATNEYANYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVV 454
Query: 239 EK 240
EK
Sbjct: 455 EK 456
>sp|Q10238|MPF1_SCHPO Meiotic PUF family protein 1 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mpf1 PE=4 SV=1
Length = 581
Score = 34.7 bits (78), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 23/97 (23%)
Query: 198 GNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEKYQR-------------- 243
GN+V+QH++ G ++I + L + E S R S +VE+ R
Sbjct: 453 GNWVIQHIIEHGSEPDKQRILNSLLKEVESYSTNRYASKVVERALRVCHVTFFDRYVKEI 512
Query: 244 -------PSIFTP--CQHKYGNFVIQQALRVTKGFQM 271
P+IF ++YGN+++Q L+V Q+
Sbjct: 513 TTPQNELPTIFLQEIASNQYGNYIVQYLLQVATPSQI 549
>sp|B6K1Y8|NOP9_SCHJY Nucleolar protein 9 OS=Schizosaccharomyces japonicus (strain yFS275
/ FY16936) GN=nop9 PE=3 SV=1
Length = 641
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 195 DPSGNYVVQHVLGLGDLK--YSEKICSLLKGKFEELSLLRCGSHLVEK 240
+ + +++++ +LG+ DLK + ++ + G F E+++ GSH+V+K
Sbjct: 489 ETASSHIIEQILGMSDLKMAHRRRLLNAFDGHFAEIAVTAPGSHIVDK 536
>sp|C1H8W8|NOP9_PARBA Nucleolar protein 9 OS=Paracoccidioides brasiliensis (strain ATCC
MYA-826 / Pb01) GN=NOP9 PE=3 SV=1
Length = 689
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 192 LSKDPSGNYVVQHVLGL--GDLKYSEKICSLLKGKFEELSLLRCGSHLVEKYQ---RPSI 246
+++DP ++V+Q L L ++ +I S L GK EL+L GSH+V+ R I
Sbjct: 533 IAQDPVVSHVLQDALTLPTSTPQFRRQITSRLSGKIAELALHSSGSHVVDALWPATRDLI 592
Query: 247 FTPCQHKYGNFVIQQALR 264
F + V ++ALR
Sbjct: 593 FVKQRFAEELVVHERALR 610
>sp|O74438|MCP2_SCHPO Meiotic coiled-coil protein 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=mcp2 PE=4 SV=1
Length = 703
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 67/149 (44%), Gaps = 28/149 (18%)
Query: 153 FRELATHVRGCVSLNN-FINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDL 211
+ E+A G + + N F N + +R + ++I H + +++ GN+VVQH++ G
Sbjct: 514 WHEVAVGENGSLVVQNMFENCVEKDKRECIEEIIF-HLDGIARGQWGNWVVQHMVENGQG 572
Query: 212 KYSEKICSLLKGKFEELSLLRCGSHLVEKY-----------------------QRPSIFT 248
+ +++ L + E S+ + S ++EK R +
Sbjct: 573 EDLKRVIDALLNRAVEFSIDQFASKVIEKAIKSGPKNFISLYLKQITNARVDRTRQPLID 632
Query: 249 PCQHKYGNFVIQQALRVTKGFQMTERNII 277
+YGN++IQQ +++ Q E+N++
Sbjct: 633 IASDQYGNYLIQQIIQLG---QPAEKNLV 658
>sp|P36000|AP1B1_YEAST AP-1 complex subunit beta-1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=APL2 PE=1 SV=1
Length = 726
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 111 SAAYRRFKDMMFSKEASSV---IIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCV-SL 166
A + + M K+ SS+ ++K + T+D ++ +++YL MN+ TH C+ ++
Sbjct: 45 DAIKKTIQQMTLGKDVSSLFPDVLKNIATIDVEQKKLVYLYVMNYAE---THPELCILAV 101
Query: 167 NNFINEMRGP 176
N FI + + P
Sbjct: 102 NTFITDAQDP 111
>sp|Q9C552|PUM23_ARATH Pumilio homolog 23 OS=Arabidopsis thaliana GN=APUM23 PE=2 SV=1
Length = 753
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 14/109 (12%)
Query: 159 HVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLS---KDPSGNYVVQHVLGL-GDLKYS 214
HV GC+ L + + L S AE+++ KD SG V++ L K
Sbjct: 499 HVMGCLILQGIFKFSSDHIQPYITSLTSMKAEYITETAKDSSGARVIEAFLASDAATKQK 558
Query: 215 EKICSLLKGKFEELSLLRCGSHLVEKYQRPSIFTPCQHKYGNFVIQQAL 263
++ L+G F ELSL GS VEK F C N +++A+
Sbjct: 559 RRLIIKLRGHFGELSLHTSGSFTVEK-----CFDAC-----NLTLREAI 597
>sp|A8K855|EFCB7_HUMAN EF-hand calcium-binding domain-containing protein 7 OS=Homo sapiens
GN=EFCAB7 PE=2 SV=1
Length = 629
Score = 31.6 bits (70), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 7/95 (7%)
Query: 119 DMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGC------VSLNNFINE 172
++ +KE S + E +D N +L L N F EL T C V NF +
Sbjct: 397 ELFLTKEFKSTLSDIFEVIDLDGNGLLSLEEYNFF-ELRTSGEKCDEDAWAVCRENFDTK 455
Query: 173 MRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLG 207
R G +DL A DP +V H +G
Sbjct: 456 RNELTRQGFMDLNLMEANDREGDPCDLWVTLHSMG 490
>sp|Q6CTZ8|RAD18_KLULA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RAD18
PE=3 SV=1
Length = 427
Score = 31.6 bits (70), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 229 SLLRCGSHLVEKYQRPSIFTPCQHKYGNFVIQQALRVTKGFQMTERNIIQELGQSSFI 286
SLLRC H+ + + + S+ TPC H + + I++ L+ + ++ + + Q F+
Sbjct: 28 SLLRC--HICKDFLKASVLTPCGHSFCSICIRKYLQKESKCPLCLSDLTESMLQKEFL 83
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.139 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 111,580,216
Number of Sequences: 539616
Number of extensions: 4580602
Number of successful extensions: 10307
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 10089
Number of HSP's gapped (non-prelim): 149
length of query: 304
length of database: 191,569,459
effective HSP length: 117
effective length of query: 187
effective length of database: 128,434,387
effective search space: 24017230369
effective search space used: 24017230369
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)