Query 044799
Match_columns 304
No_of_seqs 182 out of 1540
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 11:49:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044799.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044799hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gvo_A Pumilio 2, pumilio homo 100.0 1.8E-56 6.2E-61 411.4 15.2 266 30-298 17-337 (351)
2 3bwt_A Protein PUF4; pumilio, 100.0 9.8E-56 3.3E-60 404.0 19.6 270 30-299 4-330 (333)
3 3k49_A MRNA-binding protein PU 100.0 5.4E-54 1.8E-58 397.5 19.2 267 28-298 20-355 (369)
4 3k62_A FEM-3 mRNA-binding fact 100.0 1.3E-53 4.4E-58 398.3 15.3 274 25-299 13-398 (412)
5 3v71_A PUF (pumilio/FBF) domai 100.0 4.7E-53 1.6E-57 391.8 15.8 268 30-298 9-376 (382)
6 3k49_A MRNA-binding protein PU 100.0 7.8E-44 2.7E-48 329.4 12.0 244 49-296 3-267 (369)
7 3bwt_A Protein PUF4; pumilio, 100.0 1.9E-41 6.4E-46 309.4 14.9 226 68-297 6-249 (333)
8 3gvo_A Pumilio 2, pumilio homo 100.0 2.5E-41 8.6E-46 310.6 15.2 213 30-243 53-305 (351)
9 3v71_A PUF (pumilio/FBF) domai 100.0 2.7E-38 9.3E-43 292.8 15.5 222 70-294 13-270 (382)
10 3k62_A FEM-3 mRNA-binding fact 100.0 2.1E-38 7.2E-43 295.6 13.6 216 74-294 28-290 (412)
11 2ilr_A Protein FACE, fanconi a 72.5 23 0.00078 30.1 9.2 166 53-230 39-213 (264)
12 3u0r_A Apoptosis inhibitor 5; 35.4 2.8E+02 0.0094 25.8 11.8 81 40-126 88-171 (507)
13 2rfa_A Transient receptor pote 26.0 2.3E+02 0.0079 22.0 7.8 91 125-219 120-218 (232)
14 4fhr_B Flagellar motor switch 25.5 2.7E+02 0.0092 22.6 8.2 101 53-156 7-116 (216)
15 2xes_A Protein PAT1 homolog 1; 25.1 93 0.0032 26.1 4.9 93 152-244 72-176 (248)
16 2l60_A Peptide YY; GPCR ligand 23.4 95 0.0033 18.2 3.2 28 59-86 14-41 (41)
17 3pkr_A FLIG, flagellar motor s 21.1 3.8E+02 0.013 22.7 9.1 103 52-157 64-174 (279)
18 2fv2_A RCD1 required for cell 20.9 3.8E+02 0.013 22.6 8.0 11 162-172 208-218 (268)
19 4fhr_B Flagellar motor switch 20.6 2.1E+02 0.0071 23.3 6.1 32 161-192 85-116 (216)
No 1
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=1.8e-56 Score=411.42 Aligned_cols=266 Identities=23% Similarity=0.340 Sum_probs=241.8
Q ss_pred cCcccccchhhHhhhccCcchhHHHHhhhcCCCHHHHHHHHHHHHhcHHHhhcccccchHHHH-----------------
Q 044799 30 KNALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARS----------------- 92 (304)
Q Consensus 30 ~~~~l~~~~g~i~~la~d~~gsr~lQ~~l~~~~~e~~~~i~~~l~~~~~~L~~d~~gs~vvQ~----------------- 92 (304)
.+..++++.|+++++|+||+|||+||++|+.+++++++.||+++.+++.+||+|+|||||+|+
T Consensus 17 ~~~~l~~~~g~i~~la~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i 96 (351)
T 3gvo_A 17 PNLQLRDLIGHIVEFSQDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRI 96 (351)
T ss_dssp TTCCGGGGTTCHHHHHTSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred CCcCHHHHHhHHHHHhcCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHH
Confidence 667899999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------------HHHHHHhcCChhHHHHHHHHHHHhHHhhhccCCchHHHHHHHhhCCcccHHHHHHHHHhcHHHH
Q 044799 93 ----------------MQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFREL 156 (304)
Q Consensus 93 ----------------vQkll~~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Viq~~l~~~~~~~~~~ii~~l~~~~~~l 156 (304)
+|++++.+..++ ...+++++.+++..|++|++||||+|++++..+++.+..|++.+.+++.++
T Consensus 97 ~g~~~~l~~~~~G~rvvQk~le~~~~~~-~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~l 175 (351)
T 3gvo_A 97 RGHVLPLALQMYGCRVIQKALESISSDQ-QSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVL 175 (351)
T ss_dssp TTCHHHHHTSTTHHHHHHHHHHHSCHHH-HHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHH
T ss_pred HhhHHHHhhCHHhHHHHHHHHHhCCHHH-HHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 899999876554 455667799999999999999999999999999999999999999999999
Q ss_pred hhccCccHHHHHHHhcCChhhHHHHHHHHHHhHHhhhcCCCcchhHHHHhccCCHhhHHHHHHHHHHhHHHhhccchhhH
Q 044799 157 ATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFEELSLLRCGSH 236 (304)
Q Consensus 157 a~~~~Gs~Vlq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~GnyViQ~lL~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~ 236 (304)
++|+|||+|+|++++.++++++..+++++.+++..|++|+|||||||++|+.++++.++.|++.+.+++.+||+|||||+
T Consensus 176 s~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~ 255 (351)
T 3gvo_A 176 STHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASN 255 (351)
T ss_dssp HTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHH
T ss_pred HhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhh-------hhhh---cc------------CCCCchhHHHHHHHhhCCccchHHHHHHHHhhccccccccccccc
Q 044799 237 LVEKYQR-------PSIF---TP------------CQHKYGNFVIQQALRVTKGFQMTERNIIQELGQSSFIQGIVPFNF 294 (304)
Q Consensus 237 Vvek~l~-------~~Ii---l~------------~~d~~GnyViq~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 294 (304)
|||+|++ +.|+ +. ++|+|||||||++|+.++++++ ...+..+.++.-..+.+|||+
T Consensus 256 Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~~r--~~i~~~i~~~~~~L~~~~~g~ 333 (351)
T 3gvo_A 256 VVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPAQR--KIIMHKIRPHITTLRKYTYGK 333 (351)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHHHH--HHHHHHHGGGHHHHTTSTTTH
T ss_pred HHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCCHHHH--HHHHHHHHHHHHHHhcCCchH
Confidence 9999999 2333 21 1899999999999999988753 234444555555568889999
Q ss_pred eEee
Q 044799 295 HVVS 298 (304)
Q Consensus 295 ~i~~ 298 (304)
+|++
T Consensus 334 ~i~~ 337 (351)
T 3gvo_A 334 HILA 337 (351)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
No 2
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=9.8e-56 Score=403.95 Aligned_cols=270 Identities=27% Similarity=0.349 Sum_probs=246.7
Q ss_pred cCcccccchhhHhhhccCcchhHHHHhhhcCCCHHHHHHHHHHHHhcHHHhhcccccchHHHH-----------------
Q 044799 30 KNALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARS----------------- 92 (304)
Q Consensus 30 ~~~~l~~~~g~i~~la~d~~gsr~lQ~~l~~~~~e~~~~i~~~l~~~~~~L~~d~~gs~vvQ~----------------- 92 (304)
.|.++++++|+++++|+||+|||+||++|+.+++++++.||+++.+++.+|++|+|||||+|+
T Consensus 4 ~~~~l~~~~g~i~~l~~~q~gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~ 83 (333)
T 3bwt_A 4 ADAVLDQYIGSIHSLCKDQHGCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKIS 83 (333)
T ss_dssp TTCCGGGTTTCHHHHTSSHHHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHhcCcHhhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999
Q ss_pred ----------------HHHHHHhcCChhHHHHHHHHHHHhHHhhhccCCchHHHHHHHhhCCcccHHHHHHHHHhcHHHH
Q 044799 93 ----------------MQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFREL 156 (304)
Q Consensus 93 ----------------vQkll~~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Viq~~l~~~~~~~~~~ii~~l~~~~~~l 156 (304)
+|++++.++++++.+.+.+++.+++..|++|+|||||+|++++.++++.+..|++.+.+++.++
T Consensus 84 ~~~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l 163 (333)
T 3bwt_A 84 SPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDI 163 (333)
T ss_dssp GGGHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHHHH
T ss_pred HhHHHHHHhcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 9999999988888888899999999999999999999999999999999999999999999999
Q ss_pred hhccCccHHHHHHHhcCChhhHHHHHHHHHHhHHhhhcCCCcchhHHHHhccCCHhh----HHHHHHHHHHhHHHhhccc
Q 044799 157 ATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKY----SEKICSLLKGKFEELSLLR 232 (304)
Q Consensus 157 a~~~~Gs~Vlq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~GnyViQ~lL~~~~~~~----~~~i~~~l~~~~~~Ls~~k 232 (304)
+.|++||+|+|+|+++++++++..+++++.+++..|++|+|||||||++|+.++++. ++.|++.+.+++.+||++|
T Consensus 164 ~~~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~~~~Ls~~k 243 (333)
T 3bwt_A 164 ATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSIHK 243 (333)
T ss_dssp HTSTTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGGHHHHHTST
T ss_pred hcCchhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999999999999999999877643 6899999999999999999
Q ss_pred hhhHHHHHhhh-----hhhh---c----------cCCCCchhHHHHHHHhhCCccchHHHHHH-HHhhccc-cccccccc
Q 044799 233 CGSHLVEKYQR-----PSIF---T----------PCQHKYGNFVIQQALRVTKGFQMTERNII-QELGQSS-FIQGIVPF 292 (304)
Q Consensus 233 ~gs~Vvek~l~-----~~Ii---l----------~~~d~~GnyViq~~l~~~~~~~~~~~~~l-~~l~~~~-~~~~~~~~ 292 (304)
|||+|+|+|++ +.++ + .++|+|||||||++|+.+++++..++..| .++.++. -..+.+||
T Consensus 244 ~gs~Vvek~l~~~~~~~~ii~ell~~~~~~~l~~L~~d~~gnyViq~~l~~~~~~~~~~~~~l~~~l~p~l~~~lr~~~~ 323 (333)
T 3bwt_A 244 FGSNVIEKILKTAIVSEPMILEILNNGGETGIQSLLNDSYGNYVLQTALDISHKQNDYLYKRLSEIVAPLLVGPIRNTPH 323 (333)
T ss_dssp THHHHHHHHHTSHHHHHHHHHHHHHTTHHHHHHHHHTSTTHHHHHHHHHHHHHHHCHHHHHHHHHHHGGGCCGGGGGSHH
T ss_pred HHHHHHHHHHcccchhHHHHHHHHhccCchHHHHHHcCChHHHHHHHHHHhccCccHHHHHHHHHHHHHhchhhhcCCCC
Confidence 99999999998 2333 1 12999999999999999988754444444 4455554 56789999
Q ss_pred cceEeee
Q 044799 293 NFHVVSY 299 (304)
Q Consensus 293 ~~~i~~~ 299 (304)
||+|++.
T Consensus 324 G~~i~~~ 330 (333)
T 3bwt_A 324 GKRIIGM 330 (333)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 9999764
No 3
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=5.4e-54 Score=397.48 Aligned_cols=267 Identities=21% Similarity=0.258 Sum_probs=233.1
Q ss_pred cccCcccccchhhHhhhccCcchhHHHHhhhcCCCHHHHHHHHHHHHhcHHHhhcccccchHHHH---------------
Q 044799 28 YGKNALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARS--------------- 92 (304)
Q Consensus 28 ~~~~~~l~~~~g~i~~la~d~~gsr~lQ~~l~~~~~e~~~~i~~~l~~~~~~L~~d~~gs~vvQ~--------------- 92 (304)
..++..++++.|+++++|+|++|||+||++|+++++++++.|++++.+++.+|++|+|||||+|+
T Consensus 20 ~~~~~~l~~i~g~i~~l~~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~ 99 (369)
T 3k49_A 20 SNSNMSLKDIFGHSLEFCKDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVD 99 (369)
T ss_dssp ---CCCGGGGTTCHHHHHTSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccceeHHHHHHHHHHHHcCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ------------------HHHHHHhcCChhHHHHHHHHHHHhHHhhhccCCchHHHHHHHhhCCcccHHHHHHHHHhcHH
Q 044799 93 ------------------MQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFR 154 (304)
Q Consensus 93 ------------------vQkll~~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Viq~~l~~~~~~~~~~ii~~l~~~~~ 154 (304)
+|++++.+. +++...+.+++.+++..|++|+|||||+|++++..+++.+..|++.+.+++.
T Consensus 100 ~~~g~~~~L~~~~~G~rVlQk~le~~~-~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~ 178 (369)
T 3k49_A 100 QFKGNMKQLSLQMYACRVIQKALEYID-SNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIY 178 (369)
T ss_dssp HHTTCHHHHHHSTTHHHHHHHHHHHSC-HHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHH
T ss_pred HHhhhHHHHhcChhhHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 899999876 5555566677999999999999999999999999999999999999999999
Q ss_pred HHhhccCccHHHHHHHhcCChhhHHHHHHHHHHhHHhhhcCCCcchhHHHHhccCCHhh------HHHHHHHHHHhHHHh
Q 044799 155 ELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKY------SEKICSLLKGKFEEL 228 (304)
Q Consensus 155 ~la~~~~Gs~Vlq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~GnyViQ~lL~~~~~~~------~~~i~~~l~~~~~~L 228 (304)
+++.|+|||+|+|+|++.++++++..+++++.+++..|++|+|||||||++|+.+++.. +..|++.+.+++.+|
T Consensus 179 ~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~~~~~~~~~i~~~l~~~~~~L 258 (369)
T 3k49_A 179 HLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNKEMVDIKQEIIETVANNVVEY 258 (369)
T ss_dssp HHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhhhhHhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998764 678999999999999
Q ss_pred hccchhhHHHHHhhh-------hhhh---cc------------------CCCCchhHHHHHHHhhCCccchH-HHHHHHH
Q 044799 229 SLLRCGSHLVEKYQR-------PSIF---TP------------------CQHKYGNFVIQQALRVTKGFQMT-ERNIIQE 279 (304)
Q Consensus 229 s~~k~gs~Vvek~l~-------~~Ii---l~------------------~~d~~GnyViq~~l~~~~~~~~~-~~~~l~~ 279 (304)
|+|||||+|||||++ +.|+ +. ++|+|||||||++|+.++++++. +...+.+
T Consensus 259 s~~k~gS~Vvek~l~~~~~~~r~~ii~~l~~~~~~~~~~~~~~~~l~~L~~D~~gNyViq~~l~~~~~~~~~~l~~~i~p 338 (369)
T 3k49_A 259 SKHKFASNVVEKSILYGSKNQKDLIISKILPRDKNHALNLEDDSPMILMIKDQFANYVIQKLVNVSEGEGKKLIVIAIRA 338 (369)
T ss_dssp HTSTTHHHHHHHHHHHSCHHHHHHHHTTTSCSSHHHHHTCCTTSHHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HhhhHhhHHHHHHHHhCCHHHHHHHHHHHhccccccccccccccHHHHHHhCcchHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 999999999999999 2343 11 28999999999999999987542 2233333
Q ss_pred hhcccccc-ccccccceEee
Q 044799 280 LGQSSFIQ-GIVPFNFHVVS 298 (304)
Q Consensus 280 l~~~~~~~-~~~~~~~~i~~ 298 (304)
... .. ...+||+++++
T Consensus 339 ~l~---~L~~~~~~G~~~~~ 355 (369)
T 3k49_A 339 YLD---KLNKSNSLGNRHLA 355 (369)
T ss_dssp HHH---HHHHCC--CCCCCH
T ss_pred HHH---HHhccccCcchHHH
Confidence 222 22 23578888764
No 4
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=1.3e-53 Score=398.31 Aligned_cols=274 Identities=20% Similarity=0.307 Sum_probs=230.5
Q ss_pred CCccccCcccccc--hhhHhhhccCcchhHHHHhhhcCC-CHHHHHHHHHHHHhc---HHHhhcccccchHHHH------
Q 044799 25 PGTYGKNALLAQP--DYDIVLLGKTEGGSLFLQKMLSGK-DSTITYKIFEAVYKY---PFDLMTDGYGCHLARS------ 92 (304)
Q Consensus 25 ~~~~~~~~~l~~~--~g~i~~la~d~~gsr~lQ~~l~~~-~~e~~~~i~~~l~~~---~~~L~~d~~gs~vvQ~------ 92 (304)
.|+.+.+..|.++ +|+++++|+||+|||+||+.|+.+ ++++++.||+++.++ +.+||+|+|||||+||
T Consensus 13 ~~~~~~~~~L~~~~~~G~i~~la~Dq~GsR~lQ~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~ 92 (412)
T 3k62_A 13 NGEMRSRLSLSEVLDSGDLMKFAVDKTGCQFLEKAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISL 92 (412)
T ss_dssp TSSBCTTCCHHHHHHHTCHHHHHTSHHHHHHHHHHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHH
T ss_pred cCCCCCCCcHHHHHhCCCcHHHhcCChhHHHHHHHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCC
Confidence 3445566777777 699999999999999999999997 899999999999986 8999999999999997
Q ss_pred ----------------------------------HHHHHHhcCChhHHHHHHHHH--HHhHHhhhccCCchHHHHHHHhh
Q 044799 93 ----------------------------------MQKLIKLLVGSPCISLVISAA--YRRFKDMMFSKEASSVIIKCLET 136 (304)
Q Consensus 93 ----------------------------------vQkll~~~~~~~~~~~i~~~l--~~~~~~L~~d~~gn~Viq~~l~~ 136 (304)
+|++++.+. +++...+.+++ .+++..|++|++||||||+|++.
T Consensus 93 ~~~~~~~~~q~~~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~-~~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~ 171 (412)
T 3k62_A 93 ATNDDGYTKRQEKLKNFISSQMTDMCLDKFACRVIQSSLQNMD-LSLACKLVQALPRDARLIAICVDQNANHVIQKVVAV 171 (412)
T ss_dssp HCCSTTHHHHHHHHHHHHHHTHHHHHHSTTHHHHHHHHHHHSC-HHHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHcChhhhHHHHHHHHhCC-HHHHHHHHHHHhccccHHHHHhCccccHHHHHHHHh
Confidence 777777765 44555667778 68999999999999999999999
Q ss_pred CCcccHHHHHHHHH--hcHHHHhhccCccHHHHHHHhcCCh------------hhHH----HHHHHHHHhHHhhhcCCCc
Q 044799 137 LDEQKNEVLYLAAM--NHFRELATHVRGCVSLNNFINEMRG------------PRRG----GLLDLISSHAEFLSKDPSG 198 (304)
Q Consensus 137 ~~~~~~~~ii~~l~--~~~~~la~~~~Gs~Vlq~~l~~~~~------------~~~~----~l~~~l~~~~~~L~~d~~G 198 (304)
++++.+++|++.+. +++.++|+|+|||+|+|++++.+++ +++. .+++++.+++..|++|+||
T Consensus 172 ~~~~~~~~I~~~~~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~L~~dq~G 251 (412)
T 3k62_A 172 IPLKNWEFIVDFVATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYA 251 (412)
T ss_dssp SCHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHSTTT
T ss_pred CCHHHHHHHHHHHhcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 99999999999998 5999999999999999999999874 2343 4677888999999999999
Q ss_pred chhHHHHhccCCHh-hHHHHHH-HHHHhHHHhhccchhhHHHHHhhh-------hhhh---cc----------------C
Q 044799 199 NYVVQHVLGLGDLK-YSEKICS-LLKGKFEELSLLRCGSHLVEKYQR-------PSIF---TP----------------C 250 (304)
Q Consensus 199 nyViQ~lL~~~~~~-~~~~i~~-~l~~~~~~Ls~~k~gs~Vvek~l~-------~~Ii---l~----------------~ 250 (304)
|||||++|+++.++ .|..|+. .+.+++++||+|||||+|||||++ +.|+ +. +
T Consensus 252 NyViQ~iL~~g~~~~~r~~ii~~~l~~~~~~LS~~KfgSnVVek~L~~~~~~~r~~ii~ei~~~~~~~~~~~~~~l~~L~ 331 (412)
T 3k62_A 252 NYIIQHIVSNDDLAVYRECIIEKCLMRNLLSLSQEKFASHVVEKAFLHAPLELLAEMMDEIFDGYIPHPDTGKDALDIMM 331 (412)
T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHTTTCHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHHSSCCCTTTCCCHHHHHH
T ss_pred cHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHhCCHHHHHHHHHHHHhhccCCccccchHHHHHh
Confidence 99999999998876 4788887 699999999999999999999999 2333 10 1
Q ss_pred CCCchhHHHHHHHhhCCcc---ch--------------H-HHHHHHHhhccccccccccccceEeee
Q 044799 251 QHKYGNFVIQQALRVTKGF---QM--------------T-ERNIIQELGQSSFIQGIVPFNFHVVSY 299 (304)
Q Consensus 251 ~d~~GnyViq~~l~~~~~~---~~--------------~-~~~~l~~l~~~~~~~~~~~~~~~i~~~ 299 (304)
+|+|||||||++|++++++ ++ . +...+.++.++.......++||||++.
T Consensus 332 ~DqyGNYViQ~~L~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~L~~~~~Gk~i~~~ 398 (412)
T 3k62_A 332 FHQFGNYVVQCMLTICCDAVSGRRQTKEGGYDHAISFQDWLKKLHSRVTKERHRLSRFSSGKKMIET 398 (412)
T ss_dssp HSTTHHHHHHHHHHHHHHHHTTSSCCEETTEETHHHHHHHHHHHHHHHHHTHHHHTTSHHHHHHHHH
T ss_pred cCCchHHHHHHHHHHccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHhccCCCccHHHHH
Confidence 9999999999999999775 11 0 112334455555666888999998753
No 5
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=4.7e-53 Score=391.82 Aligned_cols=268 Identities=16% Similarity=0.183 Sum_probs=221.3
Q ss_pred cCcccccc--hhhHhhhccCcchhHHHHhhhcCCCHHH-HHHHHHHHH---hcHHHhhcccccchHHHH-----------
Q 044799 30 KNALLAQP--DYDIVLLGKTEGGSLFLQKMLSGKDSTI-TYKIFEAVY---KYPFDLMTDGYGCHLARS----------- 92 (304)
Q Consensus 30 ~~~~l~~~--~g~i~~la~d~~gsr~lQ~~l~~~~~e~-~~~i~~~l~---~~~~~L~~d~~gs~vvQ~----------- 92 (304)
.+..|+++ +|+++++|+||+|||+||+.|+.+++++ ++.||+++. +++.+||+|+|||||+|+
T Consensus 9 ~~~~L~~~~~~G~i~~~a~Dq~Gsr~lQ~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~ 88 (382)
T 3v71_A 9 IFISLEDVLLNGQLIDFAIDPSGVKFLEANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQR 88 (382)
T ss_dssp --CCHHHHHHTTCHHHHHHSHHHHHHHHHTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHH
T ss_pred ccCcHHHHhhCCCEehhccCCcccHHHHHHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHH
Confidence 34556777 7999999999999999999999887654 688888885 678899999999999998
Q ss_pred -----------------------HHHHHHhcCChhHHHHHHHHHHH-hHHhhhccCCchHHHHHHHhhCCcccHHHHHHH
Q 044799 93 -----------------------MQKLIKLLVGSPCISLVISAAYR-RFKDMMFSKEASSVIIKCLETLDEQKNEVLYLA 148 (304)
Q Consensus 93 -----------------------vQkll~~~~~~~~~~~i~~~l~~-~~~~L~~d~~gn~Viq~~l~~~~~~~~~~ii~~ 148 (304)
+|++++.+..+++. .+.+++.+ ++..|+.|++||||||+|++.++++.+.+|++.
T Consensus 89 ~li~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~-~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~ 167 (382)
T 3v71_A 89 ELLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVF-QLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHF 167 (382)
T ss_dssp HHHHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHH-HHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHH
T ss_pred HHHHHHhcchHHHHHhCccchHHHHHHHHHCCHHHHH-HHHHHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHHHHH
Confidence 88999987655444 45566987 899999999999999999999999999999999
Q ss_pred HH--hcHHHHhhccCccHHHHHHHhcCChhh-------H----HHHHHHHHHhHHhhhcCCCcchhHHHHhccCCH--hh
Q 044799 149 AM--NHFRELATHVRGCVSLNNFINEMRGPR-------R----GGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDL--KY 213 (304)
Q Consensus 149 l~--~~~~~la~~~~Gs~Vlq~~l~~~~~~~-------~----~~l~~~l~~~~~~L~~d~~GnyViQ~lL~~~~~--~~ 213 (304)
+. +++.++++|+|||+|+|++++.+++++ + ..|++++.+++..|++|+|||||||++|+.+++ +.
T Consensus 168 ~~~~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~ 247 (382)
T 3v71_A 168 LSSGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMY 247 (382)
T ss_dssp HHSTTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHH
T ss_pred HhcccchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCCcHHH
Confidence 97 699999999999999999999987643 2 346777888999999999999999999999874 46
Q ss_pred HHHHHH-HHHHhHHHhhccchhhHHHHHhhh-------hhhh---cc----------------CCCCchhHHHHHHHhhC
Q 044799 214 SEKICS-LLKGKFEELSLLRCGSHLVEKYQR-------PSIF---TP----------------CQHKYGNFVIQQALRVT 266 (304)
Q Consensus 214 ~~~i~~-~l~~~~~~Ls~~k~gs~Vvek~l~-------~~Ii---l~----------------~~d~~GnyViq~~l~~~ 266 (304)
|..|+. .|.+++++||+|||||+|||||++ +.|+ +. ++|+|||||||++|+++
T Consensus 248 r~~ii~~~l~~~~~~Ls~~k~gS~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~~~~~l~~l~~D~ygNyVvQ~~L~~~ 327 (382)
T 3v71_A 248 RDTIIDKCLLRNLLSMSQDKYASHVIEGAFLFAPPALLHEMMEEIFSGYVKDVESNRDALDILLFHQYGNYVVQQMISIC 327 (382)
T ss_dssp HHHHHHHTTTTCHHHHTTSTTHHHHHHHHHHHCCHHHHHHHHHHHCC--CCCSSSCCCHHHHHHTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCchHhHHHHHHHHhCCHHHHHHHHHHHHhhccccccccchHHHHHHCCCCccHHHHHHHHHc
Confidence 889997 599999999999999999999998 2333 21 19999999999999999
Q ss_pred Cccc-----h-----------HH-HHHHHHhhccccccccccccceEee
Q 044799 267 KGFQ-----M-----------TE-RNIIQELGQSSFIQGIVPFNFHVVS 298 (304)
Q Consensus 267 ~~~~-----~-----------~~-~~~l~~l~~~~~~~~~~~~~~~i~~ 298 (304)
++.. + .. .....++.++.......++||||++
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~~~Gk~i~~ 376 (382)
T 3v71_A 328 TAALIGKEERELPPAILLLYSGWYEKMKQRVLQHASRLERFSSGKKIID 376 (382)
T ss_dssp HHHCC-----CCCTTTHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred ccccccchhcccchhHHhhhhHHHHHHHHHHHHHHHHhhhCCchHHHHH
Confidence 8732 1 11 2233445556666788999999975
No 6
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=100.00 E-value=7.8e-44 Score=329.42 Aligned_cols=244 Identities=17% Similarity=0.208 Sum_probs=213.0
Q ss_pred chhHHHHhhhcCCC--HHHHHHHHHHHHhcHHHhhcccccchHHHHHHHHHHhcCChhHHHHHHHHHHHhHHhhhccCCc
Q 044799 49 GGSLFLQKMLSGKD--STITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEA 126 (304)
Q Consensus 49 ~gsr~lQ~~l~~~~--~e~~~~i~~~l~~~~~~L~~d~~gs~vvQ~vQkll~~~~~~~~~~~i~~~l~~~~~~L~~d~~g 126 (304)
+.|++|+++..... +.++...++++.|++.++|+|++||+++| ++++.+. +++...+++++.+++.+|++|+||
T Consensus 3 ~~s~lle~~~~~~~~~~~~~~~~l~~i~g~i~~l~~d~~gsR~lQ---~~l~~~~-~~~~~~I~~el~~~~~~L~~d~~g 78 (369)
T 3k49_A 3 HRSPLLEQLRNSSSDKNSNSNMSLKDIFGHSLEFCKDQHGSRFIQ---RELATSP-ASEKEVIFNEIRDDAIELSNDVFG 78 (369)
T ss_dssp --CHHHHHHHTTCC------CCCGGGGTTCHHHHHTSHHHHHHHH---HHHTTCC-HHHHHHHHHHHGGGHHHHHHSTTT
T ss_pred CcchhHHHHhCCCCccccccceeHHHHHHHHHHHHcCCcchHHHH---HHhccCC-HHHHHHHHHHHHHHHHHHhhCccc
Confidence 46889999888774 46788899999999999999999999999 9999964 778888999999999999999999
Q ss_pred hHHHHHHHhhCCcccHHHHHHHHHhcHHHHhhccCccHHHHHHHhcCChhhHHHHHHHHHHhHHhhhcCCCcchhHHHHh
Q 044799 127 SSVIIKCLETLDEQKNEVLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVL 206 (304)
Q Consensus 127 n~Viq~~l~~~~~~~~~~ii~~l~~~~~~la~~~~Gs~Vlq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~GnyViQ~lL 206 (304)
|||||+++++++++++..|++.+.+++.+++.|+|||+|+|++++.++++++..+++++.+++..|++|+|||||||++|
T Consensus 79 n~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l 158 (369)
T 3k49_A 79 NYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAI 158 (369)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHH
T ss_pred ccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCHhhHHHHHHHHHHhHHHhhccchhhHHHHHhhh-------hhhh--cc------CCCCchhHHHHHHHhhCCccch
Q 044799 207 GLGDLKYSEKICSLLKGKFEELSLLRCGSHLVEKYQR-------PSIF--TP------CQHKYGNFVIQQALRVTKGFQM 271 (304)
Q Consensus 207 ~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~-------~~Ii--l~------~~d~~GnyViq~~l~~~~~~~~ 271 (304)
+..+++.++.|++.+.+++.+||.|+|||+|+|+|++ +.|+ +. ++|+|||||||++|+.++++.+
T Consensus 159 ~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~~~~~ 238 (369)
T 3k49_A 159 ETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQFTNK 238 (369)
T ss_dssp HHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCTTSCH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCCchhh
Confidence 9999999999999999999999999999999999999 2343 21 2999999999999999998764
Q ss_pred HH----HHHHHHhhccccccccccccceE
Q 044799 272 TE----RNIIQELGQSSFIQGIVPFNFHV 296 (304)
Q Consensus 272 ~~----~~~l~~l~~~~~~~~~~~~~~~i 296 (304)
.+ ...+..+..+......++||-++
T Consensus 239 ~~~~~~~~i~~~l~~~~~~Ls~~k~gS~V 267 (369)
T 3k49_A 239 EMVDIKQEIIETVANNVVEYSKHKFASNV 267 (369)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHTSTTHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHhhhHhhHH
Confidence 32 23444455555555677776543
No 7
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=100.00 E-value=1.9e-41 Score=309.40 Aligned_cols=226 Identities=19% Similarity=0.243 Sum_probs=199.0
Q ss_pred HHHHHHHhcHHHhhcccccchHHHHHHHHHHhcCChhHHHHHHHHHHHhHHhhhccCCchHHHHHHHhhCCcccHHHHHH
Q 044799 68 KIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYL 147 (304)
Q Consensus 68 ~i~~~l~~~~~~L~~d~~gs~vvQ~vQkll~~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Viq~~l~~~~~~~~~~ii~ 147 (304)
.+++++.|++.+++.|++||+++| ++++.+. +++...+++++.+++.+|++|+|||||+|++++.++++++..|++
T Consensus 6 ~~l~~~~g~i~~l~~~q~gsr~iQ---~~l~~~~-~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~ 81 (333)
T 3bwt_A 6 AVLDQYIGSIHSLCKDQHGCRFLQ---KQLDILG-SKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTK 81 (333)
T ss_dssp CCGGGTTTCHHHHTSSHHHHHHHH---HHHHHSC-HHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCcHhhHHHH---HHHccCC-HHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHH
Confidence 357889999999999999999999 9999965 777888899999999999999999999999999999999999999
Q ss_pred HHHhcHHHHhhccCccHHHHHHHhcCChh-hHHHHHHHHHHhHHhhhcCCCcchhHHHHhccCCHhhHHHHHHHHHHhHH
Q 044799 148 AAMNHFRELATHVRGCVSLNNFINEMRGP-RRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKGKFE 226 (304)
Q Consensus 148 ~l~~~~~~la~~~~Gs~Vlq~~l~~~~~~-~~~~l~~~l~~~~~~L~~d~~GnyViQ~lL~~~~~~~~~~i~~~l~~~~~ 226 (304)
.+.+++.+++.|+|||||+|++++.++.+ ++..+++++.+++..|++|+|||||||++|+.++++.++.|++.+.+++.
T Consensus 82 ~~~~~~~~l~~~~~G~rviQ~~l~~~~~~~~~~~i~~el~~~~~~L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~ 161 (333)
T 3bwt_A 82 ISSPHFVEISLNPHGTRALQKLIECIKTDEEAQIVVDSLRPYTVQLSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCI 161 (333)
T ss_dssp HHGGGHHHHHHSTTHHHHHHHHHHHCCSHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHH
T ss_pred HHHhHHHHHHhcccccHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998644 57788999999999999999999999999999999999999999999999
Q ss_pred HhhccchhhHHHHHhhh-------hhhh--c------cCCCCchhHHHHHHHhhCCccch-HH-HHHHHHhhcccccccc
Q 044799 227 ELSLLRCGSHLVEKYQR-------PSIF--T------PCQHKYGNFVIQQALRVTKGFQM-TE-RNIIQELGQSSFIQGI 289 (304)
Q Consensus 227 ~Ls~~k~gs~Vvek~l~-------~~Ii--l------~~~d~~GnyViq~~l~~~~~~~~-~~-~~~l~~l~~~~~~~~~ 289 (304)
+|+.|+|||+|+|+|++ +.|+ + .++|+|||||||++|+.++++.. .. ...+..+.++....+.
T Consensus 162 ~l~~~~~Gs~Vvq~~l~~~~~~~~~~l~~el~~~~~~L~~d~~GnyVvQ~~L~~~~~~~~~~~~~~ii~~l~~~~~~Ls~ 241 (333)
T 3bwt_A 162 DIATHRHGCCVLQRCLDHGTTEQCDNLCDKLLALVDKLTLDPFGNYVVQYIITKEAEKNKYDYTHKIVHLLKPRAIELSI 241 (333)
T ss_dssp HHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHGGGHHHHHT
T ss_pred HHhcCchhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhCCccccchhHHHHHHHHHHHHHHHHc
Confidence 99999999999999999 2333 1 12999999999999998876431 12 2344455555566688
Q ss_pred ccccceEe
Q 044799 290 VPFNFHVV 297 (304)
Q Consensus 290 ~~~~~~i~ 297 (304)
++||.+++
T Consensus 242 ~k~gs~Vv 249 (333)
T 3bwt_A 242 HKFGSNVI 249 (333)
T ss_dssp STTHHHHH
T ss_pred ccHHHHHH
Confidence 88887764
No 8
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=100.00 E-value=2.5e-41 Score=310.62 Aligned_cols=213 Identities=13% Similarity=0.116 Sum_probs=130.4
Q ss_pred cCcccccchhhHhhhccCcchhHHHHhhhcCCCHHHHHHHHHHHHhcHHHhhcccccchHHHH-----------------
Q 044799 30 KNALLAQPDYDIVLLGKTEGGSLFLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARS----------------- 92 (304)
Q Consensus 30 ~~~~l~~~~g~i~~la~d~~gsr~lQ~~l~~~~~e~~~~i~~~l~~~~~~L~~d~~gs~vvQ~----------------- 92 (304)
++.+++++.+++++|++|++|++++|+++++++++++..+++++.+++.+|+.|+|||+|+|+
T Consensus 53 ~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el 132 (351)
T 3gvo_A 53 RQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKEL 132 (351)
T ss_dssp HHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGG
T ss_pred HHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHh
Confidence 445555555555555555555555555555555555555555555555555555555555555
Q ss_pred ----------------HHHHHHhcCChhHHHHHHHHHHHhHHhhhccCCchHHHHHHHhhCCcccHHHHHHHHHhcHHHH
Q 044799 93 ----------------MQKLIKLLVGSPCISLVISAAYRRFKDMMFSKEASSVIIKCLETLDEQKNEVLYLAAMNHFREL 156 (304)
Q Consensus 93 ----------------vQkll~~~~~~~~~~~i~~~l~~~~~~L~~d~~gn~Viq~~l~~~~~~~~~~ii~~l~~~~~~l 156 (304)
+|++++.+. ++....+.+.+.+++..|+.|+||++|+|++++..+++++..|++++.+++..+
T Consensus 133 ~~~~~~L~~d~~Gn~ViQk~l~~~~-~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L 211 (351)
T 3gvo_A 133 DGHVLKCVKDQNGNHVVQKCIECVQ-PQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQL 211 (351)
T ss_dssp TTCHHHHHHSTTHHHHHHHHHHHSC-GGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHH
T ss_pred hhhHHHHHHhhhhhHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhc
Confidence 446666533 444455555566666666666666666666666666666666666666666666
Q ss_pred hhccCccHHHHHHHhcCChhhHHHHHHHHHHhHHhhhcCCCcchhHHHHhccCCHhhHHHHHHHHHH-------hHHHhh
Q 044799 157 ATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLKG-------KFEELS 229 (304)
Q Consensus 157 a~~~~Gs~Vlq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~GnyViQ~lL~~~~~~~~~~i~~~l~~-------~~~~Ls 229 (304)
+.|+||++|+|++++.++++.+..|++.+.+++..|++|+||++||+++++.++++.|+.|++.+.+ .+..|+
T Consensus 212 ~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l~~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~ 291 (351)
T 3gvo_A 212 VQDQYGNYVIQHVLEHGRPEDKSKIVSEIRGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMM 291 (351)
T ss_dssp HTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHH
T ss_pred CCCchHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHcc
Confidence 6666666666666666666666666666666666666666666666666666666666666666654 466666
Q ss_pred ccchhhHHHHHhhh
Q 044799 230 LLRCGSHLVEKYQR 243 (304)
Q Consensus 230 ~~k~gs~Vvek~l~ 243 (304)
.++||++||+++|+
T Consensus 292 ~d~ygnyViq~~L~ 305 (351)
T 3gvo_A 292 KDQYANYVVQKMID 305 (351)
T ss_dssp HSTTHHHHHHHHHH
T ss_pred CCcchHHHHHHHHH
Confidence 66666666666665
No 9
>3v71_A PUF (pumilio/FBF) domain-containing protein 7, CO transcript evidence; PUF repeats, RNA binding protein-RNA complex; HET: EPE; 2.90A {Caenorhabditis elegans}
Probab=100.00 E-value=2.7e-38 Score=292.80 Aligned_cols=222 Identities=14% Similarity=0.161 Sum_probs=187.4
Q ss_pred HHHH--HhcHHHhhcccccchHHHHHHHHHHhcCChhHHHHHHHHHH---HhHHhhhccCCchHHHHHHHhhCCcccHHH
Q 044799 70 FEAV--YKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAY---RRFKDMMFSKEASSVIIKCLETLDEQKNEV 144 (304)
Q Consensus 70 ~~~l--~~~~~~L~~d~~gs~vvQ~vQkll~~~~~~~~~~~i~~~l~---~~~~~L~~d~~gn~Viq~~l~~~~~~~~~~ 144 (304)
+.++ .|++.++|+|++||+++| +.++.+..++....+++++. +++.+||+|+|||||||+++++++++++..
T Consensus 13 L~~~~~~G~i~~~a~Dq~Gsr~lQ---~~l~~~~~~~~~~~if~~l~e~~~~~~~L~~d~~Gn~vvQklle~~~~~~~~~ 89 (382)
T 3v71_A 13 LEDVLLNGQLIDFAIDPSGVKFLE---ANYPLDSEDQIRKAVFEKFTESTTLFVGLCHSRNGNFIVQKLVELATPAEQRE 89 (382)
T ss_dssp HHHHHHTTCHHHHHHSHHHHHHHH---HTSCSCTTCHHHHHHHHHHHSCHHHHHHHHSSTTHHHHHHHHHHTCCHHHHHH
T ss_pred HHHHhhCCCEehhccCCcccHHHH---HHcccCChHHHHHHHHHHHHhhHHHHHHHhcCcHHHHHHHHHHHhCCHHHHHH
Confidence 5666 699999999999999999 88998765666677888774 789999999999999999999999999999
Q ss_pred HHHH-HHhcHHHHhhccCccHHHHHHHhcCChhhHHHHHHHHHH-hHHhhhcCCCcchhHHHHhccCCHhhHHHHHHHHH
Q 044799 145 LYLA-AMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISS-HAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLLK 222 (304)
Q Consensus 145 ii~~-l~~~~~~la~~~~Gs~Vlq~~l~~~~~~~~~~l~~~l~~-~~~~L~~d~~GnyViQ~lL~~~~~~~~~~i~~~l~ 222 (304)
++.. +.+++..++.|+|||||+|++++.++.+++..+++++.+ ++..|++|+|||||||++|+..+++.++.|++.+.
T Consensus 90 li~~~l~g~v~~Ls~~~~G~rvvQk~ie~~~~~~~~~li~eL~~~~~~~L~~D~~GnhVIQk~le~~~~~~~~~Ii~~~~ 169 (382)
T 3v71_A 90 LLRQMIDGGLLAMCKDKFACRVVQLALQKFDHSNVFQLIQELSTFDLAAMCTDQISIHVIQRVVKQLPVDMWTFFVHFLS 169 (382)
T ss_dssp HHHHHHHTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTSCHHHHHHSTTTHHHHHHHHTTSCTTTSHHHHHHHH
T ss_pred HHHHHhcchHHHHHhCccchHHHHHHHHHCCHHHHHHHHHHhcccchHHHhcCcccccHHHHHHHHCCHHHHHHHHHHHh
Confidence 9887 589999999999999999999999999999999999998 89999999999999999999999999999999997
Q ss_pred --HhHHHhhccchhhHHHHHhhh-----h---------h----hh---cc-----CCCCchhHHHHHHHhhCCccchHHH
Q 044799 223 --GKFEELSLLRCGSHLVEKYQR-----P---------S----IF---TP-----CQHKYGNFVIQQALRVTKGFQMTER 274 (304)
Q Consensus 223 --~~~~~Ls~~k~gs~Vvek~l~-----~---------~----Ii---l~-----~~d~~GnyViq~~l~~~~~~~~~~~ 274 (304)
+++.+++.|+|||+|+++|++ + . |+ .. ++|+|||||||++|+.+.+....-.
T Consensus 170 ~~~~~~~la~h~~Gc~VlQ~~le~~~~~~k~~~~~~r~~~l~~l~~~I~~~~~~L~~d~~GNyVIQ~iL~~~~~~e~~r~ 249 (382)
T 3v71_A 170 SGDSLMAVCQDKYGCRLVQQVIDRLAENPKLPCFKFRIQLLHSLMTCIVRNCYRLSSNEFANYVIQYVIKSSGIMEMYRD 249 (382)
T ss_dssp STTHHHHHHHSTTHHHHHHHHHHHHTCCSSSTTHHHHHHHHHHHHHHHHTTHHHHHTSTTTHHHHHHHHTCCSTHHHHHH
T ss_pred cccchHhHhcCchhhHHHHHHHHhCCHhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCCcHHHHH
Confidence 699999999999999999999 1 0 22 11 2999999999999999765211112
Q ss_pred HHHHH-hhccccccccccccc
Q 044799 275 NIIQE-LGQSSFIQGIVPFNF 294 (304)
Q Consensus 275 ~~l~~-l~~~~~~~~~~~~~~ 294 (304)
..+.+ +..+......++||=
T Consensus 250 ~ii~~~l~~~~~~Ls~~k~gS 270 (382)
T 3v71_A 250 TIIDKCLLRNLLSMSQDKYAS 270 (382)
T ss_dssp HHHHHTTTTCHHHHTTSTTHH
T ss_pred HHHHHHHHHHHHHHhcCchHh
Confidence 23433 444444445666653
No 10
>3k62_A FEM-3 mRNA-binding factor 2; FBF, FEM-3 binding factor, PUF, RNA-binding specificity, base flipping, base stacking; 1.90A {Caenorhabditis elegans} PDB: 3k5y_A 3k5z_A 3k61_A 3k5q_A 3k64_A 3qg9_A 3v6y_A 3v74_A 3qgc_A 3qgb_A
Probab=100.00 E-value=2.1e-38 Score=295.62 Aligned_cols=216 Identities=16% Similarity=0.190 Sum_probs=186.4
Q ss_pred HhcHHHhhcccccchHHHHHHHHHHhcCChhHHHHHHHHHHHh---HHhhhccCCchHHHHHHHhhCCc-------ccHH
Q 044799 74 YKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRR---FKDMMFSKEASSVIIKCLETLDE-------QKNE 143 (304)
Q Consensus 74 ~~~~~~L~~d~~gs~vvQ~vQkll~~~~~~~~~~~i~~~l~~~---~~~L~~d~~gn~Viq~~l~~~~~-------~~~~ 143 (304)
.+++.++|+|++||.++| +.++...+++.+..|++++.++ +.+||+|+|||||||++++.+++ +++.
T Consensus 28 ~G~i~~la~Dq~GsR~lQ---~~l~~~~~~e~~~~If~el~~~~~~~~~L~~d~fGNyvvQKlle~~~~~~~~~~~~q~~ 104 (412)
T 3k62_A 28 SGDLMKFAVDKTGCQFLE---KAVKGSLTSYQKFQLFEQVIGRKDDFLKLSTNIFGNYLVQSVIGISLATNDDGYTKRQE 104 (412)
T ss_dssp HTCHHHHHTSHHHHHHHH---HHTTSCCCHHHHHHHHHHHSSSHHHHHHHHTSTTHHHHHHHHHHHHHHCCSTTHHHHHH
T ss_pred CCCcHHHhcCChhHHHHH---HHhccCCCHHHHHHHHHHHHhhhhHHHHHHhCcHHHHHHHHHHHhCCcccccccHHHHH
Confidence 699999999999999999 8999865788888899999764 89999999999999999999998 8999
Q ss_pred HHHHHHHhcHHHHhhccCccHHHHHHHhcCChhhHHHHHHHH--HHhHHhhhcCCCcchhHHHHhccCCHhhHHHHHHHH
Q 044799 144 VLYLAAMNHFRELATHVRGCVSLNNFINEMRGPRRGGLLDLI--SSHAEFLSKDPSGNYVVQHVLGLGDLKYSEKICSLL 221 (304)
Q Consensus 144 ~ii~~l~~~~~~la~~~~Gs~Vlq~~l~~~~~~~~~~l~~~l--~~~~~~L~~d~~GnyViQ~lL~~~~~~~~~~i~~~l 221 (304)
.|++.+.+++.+++.|++||+|+|++++.++++++..+++++ .+++..|++|+|||||||++|+..+++.++.|++.+
T Consensus 105 ~i~~~l~g~v~~L~~~~~GsrvvQk~le~~~~~~~~~iv~eL~~~~~i~~L~~D~~GNhVIQK~Le~~~~~~~~~I~~~~ 184 (412)
T 3k62_A 105 KLKNFISSQMTDMCLDKFACRVIQSSLQNMDLSLACKLVQALPRDARLIAICVDQNANHVIQKVVAVIPLKNWEFIVDFV 184 (412)
T ss_dssp HHHHHHHHTHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHHTSCCSHHHHHHHHCTTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcChhhhHHHHHHHHhCCHHHHHHHHHHHhccccHHHHHhCccccHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 689999999999999999999999999999999999
Q ss_pred H--HhHHHhhccchhhHHHHHhhh--h--h-------------------hh---c-c----CCCCchhHHHHHHHhhCCc
Q 044799 222 K--GKFEELSLLRCGSHLVEKYQR--P--S-------------------IF---T-P----CQHKYGNFVIQQALRVTKG 268 (304)
Q Consensus 222 ~--~~~~~Ls~~k~gs~Vvek~l~--~--~-------------------Ii---l-~----~~d~~GnyViq~~l~~~~~ 268 (304)
. +++.+||+|+|||+|+++|++ . . ++ + . ++|+|||||||++|+.+.+
T Consensus 185 ~~~~~~~~la~h~~GcrVvQk~le~~~~~~~~~~~~~~~~~qr~~il~~L~~~I~~~~~~L~~dq~GNyViQ~iL~~g~~ 264 (412)
T 3k62_A 185 ATPEHLRQICSDKYGCRVVQTIIEKLTADSMNVDLTSAAQNLRERALQRLMTSVTNRCQELATNEYANYIIQHIVSNDDL 264 (412)
T ss_dssp HSHHHHHHHHTSHHHHHHHHHHHHHTSCSGGGTTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHSTTTHHHHHHHHHCGGG
T ss_pred hcchhHHHHhcCcchHHHHHHHHHhcCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhhCccccHHHHHHHhcCCc
Confidence 8 699999999999999999998 1 0 11 1 1 2999999999999999765
Q ss_pred cchHHHH-HHHH-hhccccccccccccc
Q 044799 269 FQMTERN-IIQE-LGQSSFIQGIVPFNF 294 (304)
Q Consensus 269 ~~~~~~~-~l~~-l~~~~~~~~~~~~~~ 294 (304)
+. ... .+.. +..+....+.++||=
T Consensus 265 ~~--~r~~ii~~~l~~~~~~LS~~KfgS 290 (412)
T 3k62_A 265 AV--YRECIIEKCLMRNLLSLSQEKFAS 290 (412)
T ss_dssp HH--HHHHHHHHHTTTCHHHHHTSTTHH
T ss_pred hh--HHHHHHHHHHHHHHHHHhcccHhH
Confidence 42 122 2322 444444445555543
No 11
>2ilr_A Protein FACE, fanconi anemia group E protein; antiparallel helical hairpin, helical repeat, FANC repeat, oncoprotein; 2.00A {Homo sapiens}
Probab=72.54 E-value=23 Score=30.14 Aligned_cols=166 Identities=14% Similarity=0.009 Sum_probs=91.4
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHhcHHHhhcccccchHHHHHHHHHHhcC---ChhHHHHHHHHHHHhHHhhhccCCchHH
Q 044799 53 FLQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLV---GSPCISLVISAAYRRFKDMMFSKEASSV 129 (304)
Q Consensus 53 ~lQ~~l~~~~~e~~~~i~~~l~~~~~~L~~d~~gs~vvQ~vQkll~~~~---~~~~~~~i~~~l~~~~~~L~~d~~gn~V 129 (304)
..=+.+..+++.|.+.+.+++.=+ .++...... +.+ .++..-. ...-...+..-+.|++..| ..=++++
T Consensus 39 ~~l~~L~~~sp~q~e~lc~~L~l~--~lsd~~l~~-lc~---~ll~ls~dlS~~~a~v~~~~l~LPkil~L--~~~ASR~ 110 (264)
T 2ilr_A 39 VELQLLHECSPSQMDLLCAQLQLP--QLSDLGLLR-LCT---WLLALSPDLSLSNATVLTRSLFLGRILSL--TSSASRL 110 (264)
T ss_dssp HHHHGGGGCCHHHHHHHHHHHTGG--GCCHHHHHH-HHH---HHHHCSSCCCHHHHHHHHHHHHHHHHHHC--SSCCCHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc--cCCHHHHHH-HHH---HHHcCCcchhhhhHHHHHHHHHHHHHHhc--cCcchhH
Confidence 334455669999999999998622 111111111 123 3444321 1223345555568889888 5556666
Q ss_pred HHHHHhhCCcccHHHHHHHHH-hcHHHHhhccCccHHHHHHHh--cCChhhHHHHHHHHHHhHHhhhcCCCcchhHHHHh
Q 044799 130 IIKCLETLDEQKNEVLYLAAM-NHFRELATHVRGCVSLNNFIN--EMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQHVL 206 (304)
Q Consensus 130 iq~~l~~~~~~~~~~ii~~l~-~~~~~la~~~~Gs~Vlq~~l~--~~~~~~~~~l~~~l~~~~~~L~~d~~GnyViQ~lL 206 (304)
+..++..+-...-..+++.+. +-+..-.....=|-++.++++ ...+..+..++..+. ++.-+.+---|+|.++
T Consensus 111 L~sal~~f~k~~p~a~~~all~PLL~~~~~g~~Q~eLi~rlik~e~l~p~~~~lll~~iL----~l~WtE~~~~Vlq~lL 186 (264)
T 2ilr_A 111 LTTALTSFAAKYTYPVCSALLDPVLQAPGTGPAQTELLCCLVKMESLEPDAQVLMLGQIL----ELPWKEETFLVLQSLL 186 (264)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHCTTSCHHHHHHHHHHHH----HSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccCCHHHHHHHHHHHH----hccchHHHHHHHHHHH
Confidence 555444433445555666544 333333334445778888885 345556666666554 3444555566899999
Q ss_pred ccCC---HhhHHHHHHHHHHhHHHhhc
Q 044799 207 GLGD---LKYSEKICSLLKGKFEELSL 230 (304)
Q Consensus 207 ~~~~---~~~~~~i~~~l~~~~~~Ls~ 230 (304)
+... ++..+.++..+.+.-..++.
T Consensus 187 ~~k~~L~~~~i~~Lv~~L~~~a~~~sk 213 (264)
T 2ilr_A 187 ERQVEMTPEKFSVLMEKLCKKGLAATT 213 (264)
T ss_dssp TTCCCCCHHHHHHHHHHHHC-----CC
T ss_pred hcCCCCCHHHHHHHHHHHHHHhHHhhc
Confidence 9765 44556666666665555554
No 12
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=35.45 E-value=2.8e+02 Score=25.82 Aligned_cols=81 Identities=12% Similarity=-0.010 Sum_probs=47.5
Q ss_pred hHhhhccCcchhHH---HHhhhcCCCHHHHHHHHHHHHhcHHHhhcccccchHHHHHHHHHHhcCChhHHHHHHHHHHHh
Q 044799 40 DIVLLGKTEGGSLF---LQKMLSGKDSTITYKIFEAVYKYPFDLMTDGYGCHLARSMQKLIKLLVGSPCISLVISAAYRR 116 (304)
Q Consensus 40 ~i~~la~d~~gsr~---lQ~~l~~~~~e~~~~i~~~l~~~~~~L~~d~~gs~vvQ~vQkll~~~~~~~~~~~i~~~l~~~ 116 (304)
.+..+|+|.+-+++ |-++|+...+.++..+-+.|...+.-=.....+..+-| +.. +.+..++.+.+.|..+
T Consensus 88 ~Lp~~ck~~~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~tl~~lf~~-----i~~-~~e~~Rer~lkFi~~k 161 (507)
T 3u0r_A 88 ELPQFATGENLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQ-----ILQ-GEDIVRERAIKFLSTK 161 (507)
T ss_dssp HGGGGCCTTCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-----HHH-SCHHHHHHHHHHHHHH
T ss_pred hhHHHhhhhhhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChHHHHHHHHHH-----Hcc-cchHHHHHHHHHHHHH
Confidence 46677777666665 45566767777777776666655554344444444444 222 2345556666666666
Q ss_pred HHhhhccCCc
Q 044799 117 FKDMMFSKEA 126 (304)
Q Consensus 117 ~~~L~~d~~g 126 (304)
+..|-.+..+
T Consensus 162 l~~l~~~~l~ 171 (507)
T 3u0r_A 162 LKTLPDEVLT 171 (507)
T ss_dssp GGGSCTTTSC
T ss_pred Hhhcchhhcc
Confidence 6665555543
No 13
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.98 E-value=2.3e+02 Score=21.97 Aligned_cols=91 Identities=12% Similarity=0.006 Sum_probs=51.1
Q ss_pred CchHHHHHHHhhCCcccHHHHHHHHHhcHHH-HhhccCccHHHHHHHhcCChhhHHHHHHHHHHhHHh-------hhcCC
Q 044799 125 EASSVIIKCLETLDEQKNEVLYLAAMNHFRE-LATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEF-------LSKDP 196 (304)
Q Consensus 125 ~gn~Viq~~l~~~~~~~~~~ii~~l~~~~~~-la~~~~Gs~Vlq~~l~~~~~~~~~~l~~~l~~~~~~-------L~~d~ 196 (304)
+|...+.........+ +++.+..+-.+ -+.+..|.-.+..+......+....+++.+.++-.. -..|.
T Consensus 120 ~g~t~L~~A~~~~~~~----~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~ 195 (232)
T 2rfa_A 120 YGEHPLSFAACVGSEE----IVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNN 195 (232)
T ss_dssp CCSSHHHHHHHHTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCT
T ss_pred CCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCC
Confidence 4555555555544333 33333332222 135667777777777666555455555665554332 26778
Q ss_pred CcchhHHHHhccCCHhhHHHHHH
Q 044799 197 SGNYVVQHVLGLGDLKYSEKICS 219 (304)
Q Consensus 197 ~GnyViQ~lL~~~~~~~~~~i~~ 219 (304)
.|.-.+......+..+..+.|++
T Consensus 196 ~g~tpl~~A~~~g~~~~v~~Ll~ 218 (232)
T 2rfa_A 196 QGLTPFKLAGVEGNIVMFQHLMQ 218 (232)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh
Confidence 88888887777776654444444
No 14
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=25.52 E-value=2.7e+02 Score=22.58 Aligned_cols=101 Identities=7% Similarity=0.096 Sum_probs=55.7
Q ss_pred HHHhhhcCCCHHHHHHHHHHHHh----cHHHhhcccccchHHHHHHHHHHhc-CChhHHHHHHHHHHHhHHhhhcc----
Q 044799 53 FLQKMLSGKDSTITYKIFEAVYK----YPFDLMTDGYGCHLARSMQKLIKLL-VGSPCISLVISAAYRRFKDMMFS---- 123 (304)
Q Consensus 53 ~lQ~~l~~~~~e~~~~i~~~l~~----~~~~L~~d~~gs~vvQ~vQkll~~~-~~~~~~~~i~~~l~~~~~~L~~d---- 123 (304)
.|-.+|....|.....|+..+.+ .+....-.....-|+. ++...- -.++....+-+.|...+......
T Consensus 7 ~la~~l~~EhPQ~iA~iLs~L~~~~AA~VL~~Lp~~~~~ev~~---Ria~l~~v~p~~~~~l~~~L~~~l~~~~~~~~~~ 83 (216)
T 4fhr_B 7 QLVNFLQSEHPQTIAVVLSYLDPPVAAQILGALPEELQTEVLK---RIALLERTSPEVVKEIERNLEKKISGFVSRTFSK 83 (216)
T ss_dssp HHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHTSCGGGHHHHHH---HHHHCCCCCHHHHHHHHHHHHHHSTTCC------
T ss_pred HHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHCCHHHHHHHHH---HHHhccCCCHHHHHHHHHHHHHHHhccccccccc
Confidence 34556666677666666666553 2333333344444555 333321 12555566666666555443322
Q ss_pred CCchHHHHHHHhhCCcccHHHHHHHHHhcHHHH
Q 044799 124 KEASSVIIKCLETLDEQKNEVLYLAAMNHFREL 156 (304)
Q Consensus 124 ~~gn~Viq~~l~~~~~~~~~~ii~~l~~~~~~l 156 (304)
.-|--.+-.++..++....+.+++.+..+-.++
T Consensus 84 ~gG~~~~A~IlN~~~~~~e~~il~~L~~~d~el 116 (216)
T 4fhr_B 84 VGGIDTAAEIMNNLDRTTEKKIMDKLVQENPEL 116 (216)
T ss_dssp -CSHHHHHHHHHHSCHHHHHHHHHHHHHHCHHH
T ss_pred CCcHHHHHHHHHcCChhHHHHHHHHHHhcCHHH
Confidence 235566777888888877778888776543333
No 15
>2xes_A Protein PAT1 homolog 1; mRNA decapping, P-bodies, RNA binding protein; 2.10A {Homo sapiens} PDB: 2xer_A 2xeq_A
Probab=25.08 E-value=93 Score=26.08 Aligned_cols=93 Identities=13% Similarity=0.094 Sum_probs=54.2
Q ss_pred cHHHHhhccCccHHHHHHHhcCChhhHHHHHHHHHHhHHhhhcCCCcchhHHH-------HhccCCHhhHHHHHHHH---
Q 044799 152 HFRELATHVRGCVSLNNFINEMRGPRRGGLLDLISSHAEFLSKDPSGNYVVQH-------VLGLGDLKYSEKICSLL--- 221 (304)
Q Consensus 152 ~~~~la~~~~Gs~Vlq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~GnyViQ~-------lL~~~~~~~~~~i~~~l--- 221 (304)
-|..+..-+-|-.++-+++.+.+++++-.++..+..|+..|....-.-.|+.. ++...+-..--.++..+
T Consensus 72 ~Fi~~Lsv~KGKkLl~Rll~~L~~~q~~til~~I~~~L~~Li~~d~~d~vL~~L~~~~~~~I~~~~l~~l~~~l~~Ll~~ 151 (248)
T 2xes_A 72 HFVQIMCIRKGKRMVARILPFLSTEQAADILMTTARNLPFLIKKDAQDEVLPCLLSPFSLLLYHLPSVSITSLLRQLMNL 151 (248)
T ss_dssp HHHHHHTSHHHHHHHHHHGGGSCHHHHHHHHHHHHHTHHHHHHHTTTTCCGGGGHHHHHHHHTTCCHHHHHHHHHHHTSS
T ss_pred ceeeeeehHhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 35566666667777777777777777777777777777666532111112222 22233322222233333
Q ss_pred --HHhHHHhhccchhhHHHHHhhhh
Q 044799 222 --KGKFEELSLLRCGSHLVEKYQRP 244 (304)
Q Consensus 222 --~~~~~~Ls~~k~gs~Vvek~l~~ 244 (304)
..++.-++++|+|--++-.++.+
T Consensus 152 ~~~~~l~~v~~~k~GlSlLt~LLsR 176 (248)
T 2xes_A 152 PGSPHLTAVLQNKFGLSLLLILLSR 176 (248)
T ss_dssp TTTTCCHHHHTSHHHHHHHHHHHHH
T ss_pred cCCccceeeeecCchHHHHHHHHHH
Confidence 12566778889999998888873
No 16
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=23.37 E-value=95 Score=18.18 Aligned_cols=28 Identities=7% Similarity=0.090 Sum_probs=21.8
Q ss_pred cCCCHHHHHHHHHHHHhcHHHhhccccc
Q 044799 59 SGKDSTITYKIFEAVYKYPFDLMTDGYG 86 (304)
Q Consensus 59 ~~~~~e~~~~i~~~l~~~~~~L~~d~~g 86 (304)
+.+++|+...-+.+|...+.-+...+||
T Consensus 14 ~~aspEela~Y~~~Lr~YinlvTR~RyG 41 (41)
T 2l60_A 14 KKLSPEELNRYYASLRHYLNLVTRQRYX 41 (41)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHTTTCC-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcccccC
Confidence 4568888888888888888777777776
No 17
>3pkr_A FLIG, flagellar motor switch protein; FLIF, FLIM, MOTA, motor prote; 2.60A {Helicobacter pylori} PDB: 3usw_A 3pl4_A 3usy_A
Probab=21.05 E-value=3.8e+02 Score=22.69 Aligned_cols=103 Identities=8% Similarity=0.113 Sum_probs=63.3
Q ss_pred HHHHhhhcCCCHHHHHHHHHHHHhc----HHHhhcccccchHHHHHHHHHHhc-CChhHHHHHHHHHHHhHHhhh---cc
Q 044799 52 LFLQKMLSGKDSTITYKIFEAVYKY----PFDLMTDGYGCHLARSMQKLIKLL-VGSPCISLVISAAYRRFKDMM---FS 123 (304)
Q Consensus 52 r~lQ~~l~~~~~e~~~~i~~~l~~~----~~~L~~d~~gs~vvQ~vQkll~~~-~~~~~~~~i~~~l~~~~~~L~---~d 123 (304)
..|-.+|+...|.....|+..+.+. +....-...-.-|+. ++...- -+++....+-+.|...+.... ..
T Consensus 64 ~~La~~l~~EhPQtiAlILs~L~~~~AA~VL~~Lp~~~r~dV~~---Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~ 140 (279)
T 3pkr_A 64 QQLADFIINEHPQTIALILAHMEAPNAAETLSYFPDEMKAEISI---RMANLGEISPQVVKRVSTVLENKLESLTSYKIE 140 (279)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHTTSCHHHHHHHHH---HHHTCCCCCHHHHHHHHHHHHHHHHTCC---CC
T ss_pred HHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHHHCCHHHHHHHHH---HHHccCCCCHHHHHHHHHHHHHHHHhccccccc
Confidence 5677788888888888888777653 222223333344444 443331 235556666666666555432 34
Q ss_pred CCchHHHHHHHhhCCcccHHHHHHHHHhcHHHHh
Q 044799 124 KEASSVIIKCLETLDEQKNEVLYLAAMNHFRELA 157 (304)
Q Consensus 124 ~~gn~Viq~~l~~~~~~~~~~ii~~l~~~~~~la 157 (304)
.-|.-.+-.++..++....+.|++.+...=.+++
T Consensus 141 ~gG~~~vA~ILN~~d~~~e~~iL~~L~~~dpelA 174 (279)
T 3pkr_A 141 VGGLRAVAEIFNRLGQKSAKTTLARIESVDNKLA 174 (279)
T ss_dssp CCSHHHHHHHHHTSCHHHHHHHHHHHHTTCHHHH
T ss_pred cCcHHHHHHHHHcCChHHHHHHHHHHHhhCHHHH
Confidence 4566778888888888888888888876544443
No 18
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=20.92 E-value=3.8e+02 Score=22.62 Aligned_cols=11 Identities=9% Similarity=0.102 Sum_probs=5.4
Q ss_pred ccHHHHHHHhc
Q 044799 162 GCVSLNNFINE 172 (304)
Q Consensus 162 Gs~Vlq~~l~~ 172 (304)
..|++++++.+
T Consensus 208 s~RLLKhiirc 218 (268)
T 2fv2_A 208 SARLLKHVVRC 218 (268)
T ss_dssp CHHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 44555555543
No 19
>4fhr_B Flagellar motor switch protein FLIG; motor protein; 1.93A {Thermotoga maritima} PDB: 1lkv_X 3ajc_A 1qc7_A 3soh_B
Probab=20.64 E-value=2.1e+02 Score=23.30 Aligned_cols=32 Identities=13% Similarity=0.212 Sum_probs=22.0
Q ss_pred CccHHHHHHHhcCChhhHHHHHHHHHHhHHhh
Q 044799 161 RGCVSLNNFINEMRGPRRGGLLDLISSHAEFL 192 (304)
Q Consensus 161 ~Gs~Vlq~~l~~~~~~~~~~l~~~l~~~~~~L 192 (304)
-|...+-.+++..+......+++.|...-..|
T Consensus 85 gG~~~~A~IlN~~~~~~e~~il~~L~~~d~el 116 (216)
T 4fhr_B 85 GGIDTAAEIMNNLDRTTEKKIMDKLVQENPEL 116 (216)
T ss_dssp CSHHHHHHHHHHSCHHHHHHHHHHHHHHCHHH
T ss_pred CcHHHHHHHHHcCChhHHHHHHHHHHhcCHHH
Confidence 46677888888887777777777776543333
Done!