BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044800
         (267 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A4WRW9|HTPX_RHOS5 Protease HtpX homolog OS=Rhodobacter sphaeroides (strain ATCC 17025
           / ATH 2.4.3) GN=htpX PE=3 SV=1
          Length = 299

 Score = 35.4 bits (80), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 9/92 (9%)

Query: 104 VTGTLFGSKRGHVHFAF------QKDPNSPPAFLVELATPISGLVREMASGLVRIALECD 157
           VT T  G+     +FAF       ++   P   +  LA  I   +  +A+GLV++A+   
Sbjct: 145 VTATFAGAISMLANFAFFFGGGSNQEGERPVGIVGTLALMI---LAPLAAGLVQMAISRS 201

Query: 158 KEKEDEKKAVRLLEEPMWRTYCNGKKCGFATR 189
           +E E ++    +   P+W     GK  G A R
Sbjct: 202 REYEADRIGAEICGRPLWLASALGKIEGLARR 233


>sp|Q9VSA3|ACADM_DROME Probable medium-chain specific acyl-CoA dehydrogenase,
           mitochondrial OS=Drosophila melanogaster GN=CG12262 PE=1
           SV=1
          Length = 419

 Score = 34.7 bits (78), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 133 ELATPISGLVREM-ASGLVRIALECDKEKEDEKKAV-RLLEEPMWRTYC------NGKKC 184
           ELA   +G++  + ASGL +  +     KE +KK + RLLEEP+   YC           
Sbjct: 107 ELAYGCTGIMTALEASGLGQTPVILSGNKEQKKKYLGRLLEEPLVAAYCVTEPGAGSDVS 166

Query: 185 GFATRRECGAKEWKV 199
           G  TR E    EW +
Sbjct: 167 GIKTRAEKKGDEWVI 181


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.131    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,498,402
Number of Sequences: 539616
Number of extensions: 4621588
Number of successful extensions: 11664
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 11652
Number of HSP's gapped (non-prelim): 14
length of query: 267
length of database: 191,569,459
effective HSP length: 115
effective length of query: 152
effective length of database: 129,513,619
effective search space: 19686070088
effective search space used: 19686070088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)