Query 044800
Match_columns 267
No_of_seqs 94 out of 110
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 06:54:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044800.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044800hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04759 DUF617: Protein of un 100.0 2.1E-96 5E-101 630.2 17.3 164 103-267 1-166 (166)
2 TIGR01570 A_thal_3588 uncharac 100.0 2.1E-95 5E-100 621.3 16.3 160 104-267 1-161 (161)
3 COG2514 Predicted ring-cleavag 74.5 1.5 3.3E-05 41.4 1.2 13 244-256 108-120 (265)
4 PF12851 Tet_JBP: Oxygenase do 33.1 20 0.00043 31.0 0.9 32 174-205 1-36 (171)
5 PF02955 GSH-S_ATP: Prokaryoti 28.7 25 0.00054 30.7 0.8 22 177-199 89-110 (173)
6 PF12681 Glyoxalase_2: Glyoxal 23.3 43 0.00094 24.1 1.1 11 245-255 93-103 (108)
7 COG1465 Predicted alternative 21.3 1.1E+02 0.0025 30.3 3.7 38 227-264 310-358 (376)
8 PF08150 FerB: FerB (NUC096) d 21.2 61 0.0013 25.6 1.6 19 169-188 5-23 (76)
9 COG1886 FliN Flagellar motor s 19.7 82 0.0018 26.5 2.2 19 168-187 102-120 (136)
10 PF08531 Bac_rhamnosid_N: Alph 18.4 93 0.002 26.4 2.2 16 173-188 14-29 (172)
No 1
>PF04759 DUF617: Protein of unknown function, DUF617; InterPro: IPR006460 This family of hypothetical plant proteins are defined by a region of about 170 amino acids found at the C terminus. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. At least 12 distinct members are found in Arabidopsis thaliana (Mouse-ear cress).
Probab=100.00 E-value=2.1e-96 Score=630.25 Aligned_cols=164 Identities=64% Similarity=1.107 Sum_probs=153.0
Q ss_pred eEEEEEeecCCCceeeeeecCCCCCCeEEEEccCchhHHHHHhhccceeEEeeecccccchh--ccccccccceeeeEec
Q 044800 103 RVTGTLFGSKRGHVHFAFQKDPNSPPAFLVELATPISGLVREMASGLVRIALECDKEKEDEK--KAVRLLEEPMWRTYCN 180 (267)
Q Consensus 103 ~vTGTlFG~RrGrV~faiQedp~~~P~lLLELa~pT~~L~rEM~sGlvRIALEcek~~~~~~--~~~~LleepvWtmYCN 180 (267)
||||||||||||||+||||+||+|.|+||||||+||++|+|||++|+|||||||+|++.... ...+||+||+|+||||
T Consensus 1 rvtGTlFG~RrGrV~~aiQ~d~~s~P~lllELa~pT~~L~~EM~~GlvRIaLEc~k~~~~~~~~~~~~Ll~ep~W~myCN 80 (166)
T PF04759_consen 1 RVTGTLFGHRRGRVSFAIQEDPRSPPILLLELAMPTSALVREMASGLVRIALECEKRKGKSKGAASGSLLEEPVWTMYCN 80 (166)
T ss_pred CcEEEEEecccceEEEEEecCCCCCCeEEEEecCcHHHHHHHhhcCeEEEEEEecCCCCCCCcccccccccceeEEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999876521 2346999999999999
Q ss_pred CceeeeeeeecCChhHHHHHHHhcccccccccccCCCCCcccCCCCceeeeeeecceeeecCCcceeeeecCCCCCCCce
Q 044800 181 GKKCGFATRRECGAKEWKVLKAVEPISMGAGVLPGTGDEAEANADGEIMYMRAKFERIVGSRDSEAFYMMNPDSNGTPEL 260 (267)
Q Consensus 181 GRK~GYAvRRe~t~~D~~VL~~l~~VSmGAGVLP~~~~~~~~~~dGElmYMRA~FERVVGSkDSEsFyMinPdg~~GpEL 260 (267)
||||||||||+||++||+||++|++|||||||||+... ...+.|||||||||+|||||||+|||||||||||||+||||
T Consensus 81 GrK~GyAvRRe~t~~d~~vL~~l~~VS~GAGVlP~~~~-~~~~~~gel~YMRA~FERVVGS~DSEsfyminPdg~~GpEL 159 (166)
T PF04759_consen 81 GRKVGYAVRREPTDDDLHVLELLRSVSMGAGVLPGGGG-GSGGGDGELMYMRARFERVVGSRDSESFYMINPDGNGGPEL 159 (166)
T ss_pred CceeeeeEEcCCCHHHHHHHHhhheeeecceeccCccc-cCCCCCceEeeeeeeeeeeeccCCcceeEEECCCCCCCceE
Confidence 99999999999999999999999999999999999322 12378999999999999999999999999999999999999
Q ss_pred EEEEeeC
Q 044800 261 SVYLLRV 267 (267)
Q Consensus 261 SIFflRv 267 (267)
||||+||
T Consensus 160 SIFf~Rv 166 (166)
T PF04759_consen 160 SIFFLRV 166 (166)
T ss_pred EEEEEeC
Confidence 9999997
No 2
>TIGR01570 A_thal_3588 uncharacterized plant-specific domain TIGR01570. This model represents a region of about 170 amino acids found at the C-terminus of a family of plant proteins. These proteins typically have additional highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterized protein. At least 12 distinct members are found in Arabidopsis thaliana.
Probab=100.00 E-value=2.1e-95 Score=621.35 Aligned_cols=160 Identities=53% Similarity=0.931 Sum_probs=151.0
Q ss_pred EEEEEeecCCCceeeeeecCCCCCCeEEEEccCchhHHHHHhhccceeEEeeecccccchhccccccccceeeeEecCce
Q 044800 104 VTGTLFGSKRGHVHFAFQKDPNSPPAFLVELATPISGLVREMASGLVRIALECDKEKEDEKKAVRLLEEPMWRTYCNGKK 183 (267)
Q Consensus 104 vTGTlFG~RrGrV~faiQedp~~~P~lLLELa~pT~~L~rEM~sGlvRIALEcek~~~~~~~~~~LleepvWtmYCNGRK 183 (267)
|||||||||||||+||||+||+|+|+||||||+||++|+|||++|+|||||||+|++. .++.+||+||+|+|||||||
T Consensus 1 vtGTlfG~RrgrV~~~iQ~dp~~~P~lllELa~pt~~L~~Em~~G~vRIaLEc~k~~~--~~~~~ll~ep~W~myCNGrk 78 (161)
T TIGR01570 1 VTGTIFGYRKGRVNFCIQEDRRSLPILLLELAMPTSVLQKEMSSGLVRIALECETRKQ--DKDSKLLSEPVWTMYCNGRK 78 (161)
T ss_pred CeEEEecCCCCcceeeecCCCCCCCeeeeeecCcHHHHHHHhhcCceeEEeeeecccc--CCCccceeeeeEEEEECCce
Confidence 7999999999999999999999999999999999999999999999999999999865 34678999999999999999
Q ss_pred eeeeeeecCChhHHHHHHHhcccccccccccCCCCCcccCCC-CceeeeeeecceeeecCCcceeeeecCCCCCCCceEE
Q 044800 184 CGFATRRECGAKEWKVLKAVEPISMGAGVLPGTGDEAEANAD-GEIMYMRAKFERIVGSRDSEAFYMMNPDSNGTPELSV 262 (267)
Q Consensus 184 ~GYAvRRe~t~~D~~VL~~l~~VSmGAGVLP~~~~~~~~~~d-GElmYMRA~FERVVGSkDSEsFyMinPdg~~GpELSI 262 (267)
|||||||+||++||+||++|++|||||||||+..+.+ +.| ||||||||+|||||||+|||||||||||||+||||||
T Consensus 79 ~GyAvRR~~t~~d~~vL~~l~~VS~GAGVlP~~~~~~--~~~~gel~YMRA~FERVVGS~DSEsfyminPdg~~gpELSI 156 (161)
T TIGR01570 79 VGYAVKRSASEEDMTVLTALSKVSVGAGVLPCGKELG--GFDEDELMYMRASFERVVGSKDSESFYMINPEGNIGQELSI 156 (161)
T ss_pred eeEeEecCCCHHHHHHHHhhheeeecceeccCCCCCC--CCCCceEEEEeeeeeEeccccCceeEEeECCCCCCCceEEE
Confidence 9999999999999999999999999999999654322 334 9999999999999999999999999999999999999
Q ss_pred EEeeC
Q 044800 263 YLLRV 267 (267)
Q Consensus 263 FflRv 267 (267)
||+|+
T Consensus 157 F~lR~ 161 (161)
T TIGR01570 157 FFLRS 161 (161)
T ss_pred EEEeC
Confidence 99996
No 3
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=74.47 E-value=1.5 Score=41.40 Aligned_cols=13 Identities=54% Similarity=1.078 Sum_probs=12.2
Q ss_pred cceeeeecCCCCC
Q 044800 244 SEAFYMMNPDSNG 256 (267)
Q Consensus 244 SEsFyMinPdg~~ 256 (267)
|||+|+-||+||+
T Consensus 108 SEAlYl~DPEGNG 120 (265)
T COG2514 108 SEALYLEDPEGNG 120 (265)
T ss_pred heeeeecCCCCCe
Confidence 9999999999985
No 4
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=33.13 E-value=20 Score=30.98 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=19.3
Q ss_pred eeeeEecCceeee---eeee-cCChhHHHHHHHhcc
Q 044800 174 MWRTYCNGKKCGF---ATRR-ECGAKEWKVLKAVEP 205 (267)
Q Consensus 174 vWtmYCNGRK~GY---AvRR-e~t~~D~~VL~~l~~ 205 (267)
.|.||-||+|.+= +.|+ +.+.++..+++.|+.
T Consensus 1 ~~~~y~~~~~~~r~~~~~rk~~~~~~~~~~~~~l~~ 36 (171)
T PF12851_consen 1 SWSMYFNGCKFPRGSKKPRKFRLTPENPKLEENLQE 36 (171)
T ss_pred CeeEEeCCCCccccccccceeecccccccHHHHHHH
Confidence 3999999988765 3333 345555444444443
No 5
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=28.70 E-value=25 Score=30.74 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=13.9
Q ss_pred eEecCceeeeeeeecCChhHHHH
Q 044800 177 TYCNGKKCGFATRRECGAKEWKV 199 (267)
Q Consensus 177 mYCNGRK~GYAvRRe~t~~D~~V 199 (267)
+++||+=+| |++|.|.+.|+++
T Consensus 89 i~~nG~~~~-av~R~P~~gd~R~ 110 (173)
T PF02955_consen 89 ILFNGEPSH-AVRRIPAKGDFRS 110 (173)
T ss_dssp EEETTEE-S-EEEEE--SS-S--
T ss_pred EEECCEEhH-HeecCCCCCCcee
Confidence 679999999 9999888888764
No 6
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=23.29 E-value=43 Score=24.06 Aligned_cols=11 Identities=45% Similarity=1.183 Sum_probs=7.6
Q ss_pred ceeeeecCCCC
Q 044800 245 EAFYMMNPDSN 255 (267)
Q Consensus 245 EsFyMinPdg~ 255 (267)
-.||++||||+
T Consensus 93 ~~~~~~DPdG~ 103 (108)
T PF12681_consen 93 RSFYFIDPDGN 103 (108)
T ss_dssp EEEEEE-TTS-
T ss_pred EEEEEECCCCC
Confidence 47899999986
No 7
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=21.28 E-value=1.1e+02 Score=30.30 Aligned_cols=38 Identities=32% Similarity=0.566 Sum_probs=32.9
Q ss_pred ceeeeeeecceeeec---CCcceeeeecCCCC--------CCCceEEEE
Q 044800 227 EIMYMRAKFERIVGS---RDSEAFYMMNPDSN--------GTPELSVYL 264 (267)
Q Consensus 227 ElmYMRA~FERVVGS---kDSEsFyMinPdg~--------~GpELSIFf 264 (267)
=||-++|.||=+..+ .+.|+-.++||||- .|.|+=+||
T Consensus 310 Pl~lIeAey~g~~i~tiLQNAETIkLv~~dG~pvSV~eLk~GD~vlv~~ 358 (376)
T COG1465 310 PLMLIEAEYEGVEISTILQNAETIKLVNPDGEPVSVAELKPGDEVLVYL 358 (376)
T ss_pred ceEEEEEEecCcEEEEEeccceeEEEEcCCCcEeeeEecCCCCEEEEEe
Confidence 489999999988777 49999999999994 688988886
No 8
>PF08150 FerB: FerB (NUC096) domain; InterPro: IPR012561 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This is central domain B in proteins of the Ferlin family [].; GO: 0016021 integral to membrane
Probab=21.23 E-value=61 Score=25.64 Aligned_cols=19 Identities=16% Similarity=0.496 Sum_probs=15.2
Q ss_pred ccccceeeeEecCceeeeee
Q 044800 169 LLEEPMWRTYCNGKKCGFAT 188 (267)
Q Consensus 169 LleepvWtmYCNGRK~GYAv 188 (267)
|=+.-+| |.||+|++.||-
T Consensus 5 iPDV~IW-Ml~g~kRvAYaR 23 (76)
T PF08150_consen 5 IPDVFIW-MLSGNKRVAYAR 23 (76)
T ss_pred CCcEEEE-EEeCCeEEEEEE
Confidence 4456677 889999999994
No 9
>COG1886 FliN Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=19.72 E-value=82 Score=26.48 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=15.4
Q ss_pred cccccceeeeEecCceeeee
Q 044800 168 RLLEEPMWRTYCNGKKCGFA 187 (267)
Q Consensus 168 ~LleepvWtmYCNGRK~GYA 187 (267)
++..+|++- ++|||++||+
T Consensus 102 ~~~~~~VdI-~vNg~~Ig~G 120 (136)
T COG1886 102 KLAGEPVDI-LVNGRLIGRG 120 (136)
T ss_pred CcCCCceEE-EECCEEEEEE
Confidence 456688885 6999999986
No 10
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=18.40 E-value=93 Score=26.44 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=13.2
Q ss_pred ceeeeEecCceeeeee
Q 044800 173 PMWRTYCNGKKCGFAT 188 (267)
Q Consensus 173 pvWtmYCNGRK~GYAv 188 (267)
-...+|.||++||-.+
T Consensus 14 g~Y~l~vNG~~V~~~~ 29 (172)
T PF08531_consen 14 GRYELYVNGERVGDGP 29 (172)
T ss_dssp SEEEEEETTEEEEEE-
T ss_pred eeEEEEECCEEeeCCc
Confidence 3678999999999888
Done!