Query 044800
Match_columns 267
No_of_seqs 94 out of 110
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 11:51:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044800.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044800hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kd2_A FAS apoptotic inhibitor 26.9 34 0.0012 27.0 2.3 9 176-184 34-42 (94)
2 3bho_A Cleavage and polyadenyl 17.9 3E+02 0.01 24.1 6.8 60 75-149 41-110 (208)
3 4gym_A Glyoxalase/bleomycin re 17.2 49 0.0017 24.3 1.4 10 246-255 117-126 (149)
4 2l6o_A Uncharacterized protein 16.3 67 0.0023 25.8 2.0 27 208-234 1-31 (114)
5 3ose_A Serine/threonine-protei 16.0 1.5E+02 0.005 23.2 3.9 25 67-91 31-55 (120)
6 3rri_A Glyoxalase/bleomycin re 13.2 73 0.0025 22.6 1.4 10 246-255 112-121 (135)
7 3sk2_A EHPR; antibiotic resist 12.2 82 0.0028 22.6 1.4 11 245-255 114-124 (132)
8 2xbz_A RETS-hybrid sensor kina 12.2 1.1E+02 0.0036 24.5 2.2 30 108-138 67-96 (171)
9 3jyb_A Sensor protein; beta ba 12.0 1.8E+02 0.006 22.3 3.3 30 108-138 41-70 (145)
10 3ey7_A Biphenyl-2,3-DIOL 1,2-d 11.3 92 0.0032 21.5 1.4 11 245-255 113-123 (133)
No 1
>2kd2_A FAS apoptotic inhibitory molecule 1; protein, beta sandwich, apoptosis; NMR {Mus musculus} PDB: 2kw1_A
Probab=26.90 E-value=34 Score=26.95 Aligned_cols=9 Identities=44% Similarity=1.091 Sum_probs=6.9
Q ss_pred eeEecCcee
Q 044800 176 RTYCNGKKC 184 (267)
Q Consensus 176 tmYCNGRK~ 184 (267)
..||||+|+
T Consensus 34 dVwvNG~~i 42 (94)
T 2kd2_A 34 DVWCNGQKM 42 (94)
T ss_dssp EEEESSSBC
T ss_pred EEEECCEEe
Confidence 367999886
No 2
>3bho_A Cleavage and polyadenylation specificity factor subunit 5; CPSF5, RNA processing, cleavage factor, diadenosine tetraphosphate, mRNA processing; HET: B4P; 1.80A {Homo sapiens} PDB: 3bap_A 3mdg_A 3mdi_A 2cl3_A 3n9u_A 3q2s_A 3q2t_A 2j8q_A 3p5t_A 3p6y_A
Probab=17.89 E-value=3e+02 Score=24.07 Aligned_cols=60 Identities=28% Similarity=0.421 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCceEEEEEeecCCC--ceeeeeecCCCCCCeEEEEcc--------CchhHHHHH
Q 044800 75 PAVAVARLRTVLSTFGKHRSNLPLGLGPRVTGTLFGSKRG--HVHFAFQKDPNSPPAFLVELA--------TPISGLVRE 144 (267)
Q Consensus 75 ~~~~~~~lrs~~~~~~~~r~~~~~~~~t~vTGTlFG~RrG--rV~faiQedp~~~P~lLLELa--------~pT~~L~rE 144 (267)
....+.|++.-+...|-.+ .|.|-|+-+..+ || |.+|.... ..+|| .|..+|.||
T Consensus 41 ~~~r~~rl~~~y~~~g~R~---------sV~avil~~~~~~phV-LLlq~~~~-----~f~LPGGkle~gE~~~eaL~RE 105 (208)
T 3bho_A 41 VAARFQRMREEFDKIGMRR---------TVEGVLIVHEHRLPHV-LLLQLGTT-----FFKLPGGELNPGEDEVEGLKRL 105 (208)
T ss_dssp HHHHHHHHHHHHHHHCSEE---------EEEEEEEEEETTEEEE-EEEEEETT-----EEECSEEECCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCCce---------EEEEEEEEcCCCCcEE-EEEEcCCC-----cEECCCcccCCCCCHHHHHHHH
Confidence 3455777787777755443 688999977766 67 88896433 45665 578999999
Q ss_pred hhccc
Q 044800 145 MASGL 149 (267)
Q Consensus 145 M~sGl 149 (267)
+..-+
T Consensus 106 L~EEL 110 (208)
T 3bho_A 106 MTEIL 110 (208)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 97643
No 3
>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}
Probab=17.24 E-value=49 Score=24.31 Aligned_cols=10 Identities=10% Similarity=0.066 Sum_probs=8.7
Q ss_pred eeeeecCCCC
Q 044800 246 AFYMMNPDSN 255 (267)
Q Consensus 246 sFyMinPdg~ 255 (267)
++|.-|||||
T Consensus 117 ~~~f~DPDGn 126 (149)
T 4gym_A 117 GRSFHDLDGH 126 (149)
T ss_dssp EEEEECTTCC
T ss_pred EEEEEcCCCC
Confidence 5799999997
No 4
>2l6o_A Uncharacterized protein YP_926445.1; structural genomics, PSI-biology, protein structure initiati center for structural genomics, JCSG; NMR {Shewanella amazonensis}
Probab=16.33 E-value=67 Score=25.81 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=17.7
Q ss_pred cccccccCCCCC-c---ccCCCCceeeeeee
Q 044800 208 MGAGVLPGTGDE-A---EANADGEIMYMRAK 234 (267)
Q Consensus 208 mGAGVLP~~~~~-~---~~~~dGElmYMRA~ 234 (267)
||||-.|...-. + -..+|+||+|++-.
T Consensus 1 ~~~~~~~~~mi~WPailkl~gddELiYL~s~ 31 (114)
T 2l6o_A 1 MGAGQTPHPQLIWPALLKQQGCNELLPLRTN 31 (114)
T ss_dssp CCSSSCSCSSCCSSEEECCSSCCCCEEESSH
T ss_pred CCCCcccCcCccCCEEEecCCCceeEeecCH
Confidence 799988866310 0 01467899999854
No 5
>3ose_A Serine/threonine-protein kinase MARK1; kinase associated-1(Ka1) domain, transferase, lipid binding membrane association; 1.70A {Homo sapiens} SCOP: d.129.6.1 PDB: 1ul7_A
Probab=16.03 E-value=1.5e+02 Score=23.23 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=20.1
Q ss_pred cCCccccchHHHHHHHHHHHHHhcC
Q 044800 67 MQTPKKKLPAVAVARLRTVLSTFGK 91 (267)
Q Consensus 67 ~~~~~~~~~~~~~~~lrs~~~~~~~ 91 (267)
..++..+.+...+..|+.||...+-
T Consensus 31 v~tTS~~~P~eIm~eI~rvL~~~gi 55 (120)
T 3ose_A 31 MKTTSSMDPNDMMREIRKVLDANNC 55 (120)
T ss_dssp CCCEECSCHHHHHHHHHHHHHHTTC
T ss_pred ecCcccCCHHHHHHHHHHHHHHCCC
Confidence 4466778899999999999998653
No 6
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=13.23 E-value=73 Score=22.58 Aligned_cols=10 Identities=30% Similarity=1.099 Sum_probs=9.0
Q ss_pred eeeeecCCCC
Q 044800 246 AFYMMNPDSN 255 (267)
Q Consensus 246 sFyMinPdg~ 255 (267)
+||+.|||||
T Consensus 112 ~~~~~DPdGn 121 (135)
T 3rri_A 112 TFFLIDPSNN 121 (135)
T ss_dssp EEEEECTTCC
T ss_pred EEEEECCCCC
Confidence 7899999987
No 7
>3sk2_A EHPR; antibiotic resistance, griseoluteate-binding protein; HET: GRI; 1.01A {Pantoea agglomerans} PDB: 3sk1_A*
Probab=12.23 E-value=82 Score=22.57 Aligned_cols=11 Identities=27% Similarity=0.764 Sum_probs=9.1
Q ss_pred ceeeeecCCCC
Q 044800 245 EAFYMMNPDSN 255 (267)
Q Consensus 245 EsFyMinPdg~ 255 (267)
..||+.|||||
T Consensus 114 ~~~~~~DPdGn 124 (132)
T 3sk2_A 114 RTFLISDPDGH 124 (132)
T ss_dssp EEEEEECTTCC
T ss_pred EEEEEECCCCC
Confidence 45899999987
No 8
>2xbz_A RETS-hybrid sensor kinase; phosphoprotein, biofilm, transferase; 2.65A {Pseudomonas aeruginosa}
Probab=12.16 E-value=1.1e+02 Score=24.54 Aligned_cols=30 Identities=13% Similarity=0.124 Sum_probs=22.8
Q ss_pred EeecCCCceeeeeecCCCCCCeEEEEccCch
Q 044800 108 LFGSKRGHVHFAFQKDPNSPPAFLVELATPI 138 (267)
Q Consensus 108 lFG~RrGrV~faiQedp~~~P~lLLELa~pT 138 (267)
-||+.++-+||.|.-..... .++||+.-|.
T Consensus 67 n~G~s~s~~Wlr~~L~n~~~-~~~L~i~~p~ 96 (171)
T 2xbz_A 67 IFPASPQAVWLQVQLPAQKV-PSWLWIFAPR 96 (171)
T ss_dssp EECSEEEEEEEEEEECCCSS-CEEEEEECTT
T ss_pred ccCCCCCCEEEEEEEEcCCC-ceEEEECCCC
Confidence 48999999999999644333 6778888774
No 9
>3jyb_A Sensor protein; beta barrel, carbohydrate binding domain, signaling kinase, component system, RETS, kinase, phosphoprotein, transferase; 2.04A {Pseudomonas aeruginosa}
Probab=12.05 E-value=1.8e+02 Score=22.28 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=22.0
Q ss_pred EeecCCCceeeeeecCCCCCCeEEEEccCch
Q 044800 108 LFGSKRGHVHFAFQKDPNSPPAFLVELATPI 138 (267)
Q Consensus 108 lFG~RrGrV~faiQedp~~~P~lLLELa~pT 138 (267)
-||+.++-+||.++-. ...-..+||+.-|.
T Consensus 41 n~G~t~~~~Wlr~~l~-~~~~~~~L~i~~p~ 70 (145)
T 3jyb_A 41 IFPASPQAVWLQVQLP-AQKVPSWLWIFAPR 70 (145)
T ss_dssp EECSCSCEEEEEEEEC-CCSSCEEEEEECTT
T ss_pred ccCCCCCCEEEEEEEc-CCCcceEEEECCCC
Confidence 3799999999999876 33345677877653
No 10
>3ey7_A Biphenyl-2,3-DIOL 1,2-dioxygenase III-related protein; integron cassette protein mobIle metagenome structural genomics, oxidoreductase, PSI-2; HET: MSE; 1.60A {Vibrio cholerae} PDB: 3ey8_A*
Probab=11.31 E-value=92 Score=21.54 Aligned_cols=11 Identities=45% Similarity=1.041 Sum_probs=9.1
Q ss_pred ceeeeecCCCC
Q 044800 245 EAFYMMNPDSN 255 (267)
Q Consensus 245 EsFyMinPdg~ 255 (267)
..||+.|||||
T Consensus 113 ~~~~~~DPdG~ 123 (133)
T 3ey7_A 113 TSFYFRDPDGN 123 (133)
T ss_dssp EEEEEECTTCC
T ss_pred EEEEEECCCCC
Confidence 46899999986
Done!