BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044801
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HVQ|A Chain A, Crystal Structures Of Hevamine, A Plant Defence Protein
With Chitinase And Lysozyme Activity, And Its Complex
With An Inhibitor
pdb|1LLO|A Chain A, Hevamine A (A Plant EndochitinaseLYSOZYME) COMPLEXED WITH
Allosamidin
pdb|2HVM|A Chain A, Hevamine A At 1.8 Angstrom Resolution
Length = 273
Score = 254 bits (648), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 123/190 (64%), Positives = 141/190 (74%), Gaps = 1/190 (0%)
Query: 27 GVISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGL 86
G I++YWGQNGNEG+L CS+ Y VNIAFL FGN QTPQINLAGHC+P GC +
Sbjct: 1 GGIAIYWGQNGNEGTLTQTCSTRKYSYVNIAFLNKFGNGQTPQINLAGHCNPAAGGCTIV 60
Query: 87 SNEIKTCQGQGIKVXXXXXXXXXXXXXXXXXXXRQVAQYLWDNFLGGQSSSRPLGDAVLD 146
SN I++CQ QGIKV + VA YLW+NFLGG+SSSRPLGDAVLD
Sbjct: 61 SNGIRSCQIQGIKVMLSLGGGIGSYTLASQADAKNVADYLWNNFLGGKSSSRPLGDAVLD 120
Query: 147 GIDFDIEGGTNQHWDELARALSNFSQQ-KKVYLAAAPQCPYPDAWLGGALGTGLFDYVWV 205
GIDFDIE G+ +WD+LAR LS +S+Q KKVYL AAPQCP+PD +LG AL TGLFDYVWV
Sbjct: 121 GIDFDIEHGSTLYWDDLARYLSAYSKQGKKVYLTAAPQCPFPDRYLGTALNTGLFDYVWV 180
Query: 206 QFYNNPPCQY 215
QFYNNPPCQY
Sbjct: 181 QFYNNPPCQY 190
>pdb|1KR0|A Chain A, Hevamine Mutant D125aY183F IN COMPLEX WITH TETRA-Nag
Length = 273
Score = 249 bits (637), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 121/190 (63%), Positives = 140/190 (73%), Gaps = 1/190 (0%)
Query: 27 GVISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGL 86
G I++YWGQNGNEG+L CS+ Y VNIAFL FGN QTPQINLAGHC+P GC +
Sbjct: 1 GGIAIYWGQNGNEGTLTQTCSTRKYSYVNIAFLNKFGNGQTPQINLAGHCNPAAGGCTIV 60
Query: 87 SNEIKTCQGQGIKVXXXXXXXXXXXXXXXXXXXRQVAQYLWDNFLGGQSSSRPLGDAVLD 146
SN I++CQ QGIKV + VA YLW+NFLGG+SSSRPLGDAVLD
Sbjct: 61 SNGIRSCQIQGIKVMLSLGGGIGSYTLASQADAKNVADYLWNNFLGGKSSSRPLGDAVLD 120
Query: 147 GIDFDIEGGTNQHWDELARALSNFSQQ-KKVYLAAAPQCPYPDAWLGGALGTGLFDYVWV 205
GIDF IE G+ +WD+LAR LS +S+Q KKVYL AAPQCP+PD +LG AL TGLFDYVWV
Sbjct: 121 GIDFAIEHGSTLYWDDLARYLSAYSKQGKKVYLTAAPQCPFPDRYLGTALNTGLFDYVWV 180
Query: 206 QFYNNPPCQY 215
QF+NNPPCQY
Sbjct: 181 QFFNNPPCQY 190
>pdb|2GSJ|A Chain A, Cdna Cloning And 1.75a Crystal Structure Determination Of
Ppl2, A Novel Chimerolectin From Parkia Platycephala
Seeds Exhibiting Endochitinolytic Activity
Length = 271
Score = 249 bits (637), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 125/209 (59%), Positives = 148/209 (70%), Gaps = 3/209 (1%)
Query: 27 GVISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGL 86
G I VYWGQNG EG+L C SG Y IVNIAFL+ FG + PQINLAGHCDP NNGC +
Sbjct: 1 GGIVVYWGQNGGEGTLTSTCESGLYQIVNIAFLSQFGGGRRPQINLAGHCDPANNGCRTV 60
Query: 87 SNEIKTCQGQGIKVXXXXXXXXXXXXXXXXXXXRQVAQYLWDNFLGGQSSSRPLGDAVLD 146
S+ I+ CQ +GIKV R VA Y+W+NFLGG+SSSRPLGDAVLD
Sbjct: 61 SDGIRACQRRGIKVMLSIGGGAGSYSLSSVQDARSVADYIWNNFLGGRSSSRPLGDAVLD 120
Query: 147 GIDFDIEGGTNQHWDELARALSNFSQ-QKKVYLAAAPQCPYPDAWLGGALGTGLFDYVWV 205
G+DFDIE G ++D LAR LS ++ KKV+L+AAPQCP+PD L AL TGLFDYVWV
Sbjct: 121 GVDFDIEHG-GAYYDALARRLSEHNRGGKKVFLSAAPQCPFPDQSLNKALSTGLFDYVWV 179
Query: 206 QFYNNPPCQY-SGNADNLKNSWNQWTSNL 233
QFYNNP C++ SGN N +NSWN+WTS+
Sbjct: 180 QFYNNPQCEFNSGNPSNFRNSWNKWTSSF 208
>pdb|1KR1|A Chain A, Hevamine Mutant D125aE127A IN COMPLEX WITH TETRA-Nag
Length = 273
Score = 249 bits (635), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 121/190 (63%), Positives = 139/190 (73%), Gaps = 1/190 (0%)
Query: 27 GVISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGL 86
G I++YWGQNGNEG+L CS+ Y VNIAFL FGN QTPQINLAGHC+P GC +
Sbjct: 1 GGIAIYWGQNGNEGTLTQTCSTRKYSYVNIAFLNKFGNGQTPQINLAGHCNPAAGGCTIV 60
Query: 87 SNEIKTCQGQGIKVXXXXXXXXXXXXXXXXXXXRQVAQYLWDNFLGGQSSSRPLGDAVLD 146
SN I++CQ QGIKV + VA YLW+NFLGG+SSSRPLGDAVLD
Sbjct: 61 SNGIRSCQIQGIKVMLSLGGGIGSYTLASQADAKNVADYLWNNFLGGKSSSRPLGDAVLD 120
Query: 147 GIDFDIEGGTNQHWDELARALSNFSQQ-KKVYLAAAPQCPYPDAWLGGALGTGLFDYVWV 205
GIDF I G+ +WD+LAR LS +S+Q KKVYL AAPQCP+PD +LG AL TGLFDYVWV
Sbjct: 121 GIDFAIAHGSTLYWDDLARYLSAYSKQGKKVYLTAAPQCPFPDRYLGTALNTGLFDYVWV 180
Query: 206 QFYNNPPCQY 215
QFYNNPPCQY
Sbjct: 181 QFYNNPPCQY 190
>pdb|1KQY|A Chain A, Hevamine Mutant D125aE127AY183F IN COMPLEX WITH PENTA-Nag
pdb|1KQZ|A Chain A, Hevamine Mutant D125aE127AY183F IN COMPLEX WITH TETRA-Nag
Length = 273
Score = 248 bits (632), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 120/190 (63%), Positives = 139/190 (73%), Gaps = 1/190 (0%)
Query: 27 GVISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGL 86
G I++YWGQNGNEG+L CS+ Y VNIAFL FGN QTPQINLAGHC+P GC +
Sbjct: 1 GGIAIYWGQNGNEGTLTQTCSTRKYSYVNIAFLNKFGNGQTPQINLAGHCNPAAGGCTIV 60
Query: 87 SNEIKTCQGQGIKVXXXXXXXXXXXXXXXXXXXRQVAQYLWDNFLGGQSSSRPLGDAVLD 146
SN I++CQ QGIKV + VA YLW+NFLGG+SSSRPLGDAVLD
Sbjct: 61 SNGIRSCQIQGIKVMLSLGGGIGSYTLASQADAKNVADYLWNNFLGGKSSSRPLGDAVLD 120
Query: 147 GIDFDIEGGTNQHWDELARALSNFSQQ-KKVYLAAAPQCPYPDAWLGGALGTGLFDYVWV 205
GIDF I G+ +WD+LAR LS +S+Q KKVYL AAPQCP+PD +LG AL TGLFDYVWV
Sbjct: 121 GIDFAIAHGSTLYWDDLARYLSAYSKQGKKVYLTAAPQCPFPDRYLGTALNTGLFDYVWV 180
Query: 206 QFYNNPPCQY 215
QF+NNPPCQY
Sbjct: 181 QFFNNPPCQY 190
>pdb|3D5H|A Chain A, Crystal Structure Of Haementhin From Haemanthus
Multiflorus At 2.0a Resolution: Formation Of A Novel
Loop On A Tim Barrel Fold And Its Functional
Significance
pdb|3HU7|A Chain A, Structural Characterization And Binding Studies Of A Plant
Pathogenesis Related Protein Heamanthin From Haemanthus
Multiflorus Reveal Its Dual Inhibitory Effects Against
Xylanase And Alpha-Amylase
pdb|3M7S|A Chain A, Crystal Structure Of The Complex Of Xylanase Gh-11 And
Alpha Amylase Inhibitor Protein With Cellobiose At 2.4 A
Resolution
pdb|3OIH|A Chain A, Crystal Structure Of The Complex Of Xylanase-Alpha-Amylase
Inhibitor Protein (Xaip-I) With Trehalose At 1.87 A
Resolution
Length = 272
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 118/206 (57%), Gaps = 10/206 (4%)
Query: 29 ISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSN 88
I+VYWGQN +E SL C +GNY V I FL TFG QTP ++++GH +GL
Sbjct: 5 IAVYWGQNFDERSLEATCDTGNYAYVIIGFLNTFGGGQTPALDISGHSP------SGLEP 58
Query: 89 EIKTCQGQGIKVXXXXXXXXXXXXXXXXXXXRQVAQYLWDNFL--GGQSSSRPLGDAVLD 146
+IK CQ + +KV +A YL++NFL G S +RP G+AVLD
Sbjct: 59 QIKHCQSKNVKVLLSIGGPKGPYSLDSRSDANDLAVYLFNNFLLPPGHSENRPFGNAVLD 118
Query: 147 GIDFDIEGGTNQHWDELARALSNFSQQKKVY-LAAAPQCPYPDAWLGGALGTGLFDYVWV 205
GIDF IE G + LA LS+F + L AAPQC YPD LG + + FD +WV
Sbjct: 119 GIDFHIEHGGPSQYQLLANILSSFRLAGTEFALTAAPQCVYPDPNLGTVINSATFDAIWV 178
Query: 206 QFYNNPPCQY-SGNADNLKNSWNQWT 230
QFYNNP C Y SGNA+ L N+W +W+
Sbjct: 179 QFYNNPQCSYSSGNAEALMNAWREWS 204
>pdb|3O9N|A Chain A, Crystal Structure Of A New Form Of Xylanase-A-Amylase
Inhibitor Protein(Xaip-Iii) At 2.4 A Resolution
Length = 272
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/206 (44%), Positives = 118/206 (57%), Gaps = 10/206 (4%)
Query: 29 ISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSN 88
I+VYWGQN +E SL C SGNY V I FL TFG QTP ++++GH +GL
Sbjct: 5 IAVYWGQNFDERSLEATCDSGNYAYVIIGFLNTFGGGQTPALDISGHSP------SGLEP 58
Query: 89 EIKTCQGQGIKVXXXXXXXXXXXXXXXXXXXRQVAQYLWDNFL--GGQSSSRPLGDAVLD 146
+IK CQ + +KV +A YL++NFL G S + P G+AVLD
Sbjct: 59 QIKHCQSKNVKVLLSIGGPAGPYSLDSRSDANDLAVYLFNNFLLPPGHSENNPFGNAVLD 118
Query: 147 GIDFDIEGGTNQHWDELARALSNFSQQKKVY-LAAAPQCPYPDAWLGGALGTGLFDYVWV 205
GIDF IE G + LA LS+F + + L AAPQC YPD LG + + FD +WV
Sbjct: 119 GIDFHIEHGGPSQYQLLANILSSFRLKGTEFALTAAPQCVYPDPNLGTVINSATFDAIWV 178
Query: 206 QFYNNPPCQY-SGNADNLKNSWNQWT 230
QFYNNP C Y SGNA+ L N+W +W+
Sbjct: 179 QFYNNPQCSYSSGNAEALMNAWREWS 204
>pdb|3MU7|A Chain A, Crystal Structure Of The Xylanase And Alpha-Amylase
Inhibitor Protein (Xaip-Ii) From Scadoxus Multiflorus At
1.2 A Resolution
Length = 273
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 92/207 (44%), Positives = 113/207 (54%), Gaps = 11/207 (5%)
Query: 29 ISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSN 88
I+VYWGQ+ +E SL C SGNY V I FL TFG QTP ++++GH GL
Sbjct: 5 IAVYWGQSFDERSLEATCDSGNYAYVIIGFLNTFGGGQTPALDISGHSP------KGLEP 58
Query: 89 EIKTCQGQGIKVXXXXXXXXXXXXXXXXXXXRQVAQYLWDNFL---GGQSSSRPLGDAVL 145
+IK CQ + +KV +A YL NFL G S SRP G+AVL
Sbjct: 59 QIKHCQSKNVKVLLSIGGPAGPYSLDSRNDANDLAVYLHKNFLLPPAGTSESRPFGNAVL 118
Query: 146 DGIDFDIEGGTNQHWDELARALSNFSQQKKVY-LAAAPQCPYPDAWLGGALGTGLFDYVW 204
DGIDF IE G + LA LS+F + L AAPQC YPD LG + + FD +W
Sbjct: 119 DGIDFHIEHGGPSQYQLLANILSSFRLSGSEFALTAAPQCVYPDPNLGTVINSATFDAIW 178
Query: 205 VQFYNNPPCQYSG-NADNLKNSWNQWT 230
VQFYNNP C YS NA L N+W +W+
Sbjct: 179 VQFYNNPQCSYSASNASALMNAWKEWS 205
>pdb|1CNV|A Chain A, Crystal Structure Of Concanavalin B At 1.65 A Resolution
Length = 299
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/218 (38%), Positives = 118/218 (54%), Gaps = 14/218 (6%)
Query: 25 SAGVISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFG-NSQTPQINLAGHCDPT-NNG 82
S+ I+VYWGQ +G L D C + NY IV I+FL FG + P++ L G C P+ N
Sbjct: 3 SSTEIAVYWGQR-EDGLLRDTCKTNNYKIVFISFLDKFGCEIRKPELELEGVCGPSVGNP 61
Query: 83 CAGLSNEIKTCQGQGIKVXXXXXXXXXXXXXXXXXXXRQVAQYLWDNFLGGQSSSRPLGD 142
C+ L ++IK CQ G+KV + +A+YL FL + PLG
Sbjct: 62 CSFLESQIKECQRMGVKVFLALGGPKGTYSACSADYAKDLAEYLHTYFLSERREG-PLGK 120
Query: 143 AVLDGIDFDIEGGTNQ-HWDELARALSNFSQQKKVY-----LAAAPQCPYPDAWLGGALG 196
LDGI FDI+ ++ +WD L L Q K VY L+AAP C PD +L A+
Sbjct: 121 VALDGIHFDIQKPVDELNWDNL---LEELYQIKDVYQSTFLLSAAPGCLSPDEYLDNAIQ 177
Query: 197 TGLFDYVWVQFYNNPPCQYS-GNADNLKNSWNQWTSNL 233
T FDY++V+FYN+ CQYS GN ++N+W WT ++
Sbjct: 178 TRHFDYIFVRFYNDRSCQYSTGNIQRIRNAWLSWTKSV 215
>pdb|2UY2|A Chain A, Sccts1_apo Crystal Structure
pdb|2UY3|A Chain A, Sccts1_8-Chlorotheophylline Crystal Structure
pdb|2UY4|A Chain A, Sccts1_acetazolamide Crystal Structure
pdb|2UY5|A Chain A, Sccts1_kinetin Crystal Structure
Length = 294
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/210 (37%), Positives = 102/210 (48%), Gaps = 18/210 (8%)
Query: 29 ISVYWGQN--GNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNG---- 82
I+VYWGQN G + SLA C S + I ++FL F T +N A C T +
Sbjct: 8 IAVYWGQNSAGTQESLATYCESSDADIFLLSFLNQF---PTLGLNFANACSDTFSDGLLH 64
Query: 83 CAGLSNEIKTCQGQGIKVXXXXXXXXXXXXXXXXXXXRQVAQYLWDNF-LGGQSSSRPLG 141
C ++ +I+TCQ G KV AQ LWD F G +S RP
Sbjct: 65 CTQIAEDIETCQSLGKKVLLSLGGASGSYLFSDDSQAETFAQTLWDTFGEGTGASERPFD 124
Query: 142 DAVLDGIDFDIEGGTNQHWDELARALSNFSQQ--KKVYLAAAPQCPYPDAWLGGALGTGL 199
AV+DG DFDIE + LA L + K+ YL+AAPQCPYPDA +G L
Sbjct: 125 SAVVDGFDFDIENNNEVGYSALATKLRTLFAEGTKQYYLSAAPQCPYPDASVGDLLENAD 184
Query: 200 FDYVWVQFYNNPPCQYSGNADNLKNSWNQW 229
D+ ++QFYNN C SG + +W+ W
Sbjct: 185 IDFAFIQFYNN-YCSVSG-----QFNWDTW 208
>pdb|1OM0|A Chain A, Crystal Structure Of Xylanase Inhibitor Protein (Xip-I)
From Wheat
pdb|1TA3|A Chain A, Crystal Structure Of Xylanase (Gh10) In Complex With
Inhibitor (Xip)
pdb|1TE1|A Chain A, Crystal Structure Of Family 11 Xylanase In Complex With
Inhibitor (xip-i)
Length = 274
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 69/213 (32%), Positives = 111/213 (52%), Gaps = 16/213 (7%)
Query: 27 GVISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGL 86
G ++V+WG+N EGSL +AC SG Y +V ++FL FG + ++L+GH + +
Sbjct: 6 GQVTVFWGRNKAEGSLREACDSGMYTMVTMSFLDVFGANGKYHLDLSGH------DLSSV 59
Query: 87 SNEIKTCQGQGIKVXXXXXXXXXXXXXXXXXXXRQVAQYLWDNFLGGQSSS--RPLGDAV 144
+IK CQ +G+ V + +LW+++ GG S RP GDA
Sbjct: 60 GADIKHCQSKGVPVSLSIGGYGTGYSLPSNRSALDLFDHLWNSYFGGSKPSVPRPFGDAW 119
Query: 145 LDGIDFDIEGGT-NQHWDELARALSNFSQQ----KKVYLAAAPQCPYPD-AWLGGALGTG 198
LDG+D +E GT +D LA L+ + + K ++L A +C YP A +G AL TG
Sbjct: 120 LDGVDLFLEHGTPADRYDVLALELAKHNIRGGPGKPLHLTATVRCGYPPAAHVGRALATG 179
Query: 199 LFDYVWVQFYNNPPCQYSGNADNLKNSWNQWTS 231
+F+ V V+ Y + ++ + SW++WT+
Sbjct: 180 IFERVHVRTYESD--KWCNQNLGWEGSWDKWTA 210
>pdb|2XUC|A Chain A, Natural Product-Guided Discovery Of A Fungal Chitinase
Inhibitor
pdb|2XUC|B Chain B, Natural Product-Guided Discovery Of A Fungal Chitinase
Inhibitor
pdb|2XUC|C Chain C, Natural Product-Guided Discovery Of A Fungal Chitinase
Inhibitor
pdb|2XVP|A Chain A, Chia1 From Aspergillus Fumigatus, Apostructure
pdb|2XVP|B Chain B, Chia1 From Aspergillus Fumigatus, Apostructure
pdb|2XTK|A Chain A, Chia1 From Aspergillus Fumigatus In Complex With
Acetazolamide
pdb|2XTK|B Chain B, Chia1 From Aspergillus Fumigatus In Complex With
Acetazolamide
Length = 310
Score = 100 bits (249), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 96/233 (41%), Gaps = 24/233 (10%)
Query: 29 ISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQT---PQINLAGHCD----PTNN 81
+++YWGQ N+ L+ C + I+NI F+ F + P N CD TN+
Sbjct: 4 LAIYWGQGPNQLRLSHFCQETSLDIINIGFINYFPDMSPGHWPGSNFGNQCDGSVYVTND 63
Query: 82 G--------CAGLSNEIKTCQGQGIKVXXXXX-XXXXXXXXXXXXXXRQVAQYLWDNF-- 130
G C + +I CQ G KV A +LW F
Sbjct: 64 GVVTKLLSGCHQIMEDIPICQAAGKKVLLSIGGAYPPDQSILSEDSAVAFATFLWGAFGP 123
Query: 131 -LGGQSSSRPLGDAVLDGIDFDIEGGTNQHWDELARALSNFSQQ---KKVYLAAAPQCPY 186
G RP GD V+DG DFDIE + + + Q +K YL+AAPQC
Sbjct: 124 VAEGWEGPRPFGDVVVDGFDFDIEHNGGFGYATMVNTFRQYFNQVPERKFYLSAAPQCII 183
Query: 187 PDAWLGGALGTGLFDYVWVQFYNNPPCQYSGNADNLKNSWN--QWTSNLSGSG 237
PDA L A+ FD++W+Q+YN C D ++N W + L S
Sbjct: 184 PDAQLSDAIFNAAFDFIWIQYYNTAACSAKSFIDTSLGTFNFDAWVTVLKASA 236
>pdb|2XVN|A Chain A, A. Fumigatus Chitinase A1 Phenyl-Methylguanylurea Complex
pdb|2XVN|B Chain B, A. Fumigatus Chitinase A1 Phenyl-Methylguanylurea Complex
pdb|2XVN|C Chain C, A. Fumigatus Chitinase A1 Phenyl-Methylguanylurea Complex
Length = 309
Score = 100 bits (248), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 96/233 (41%), Gaps = 24/233 (10%)
Query: 29 ISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQT---PQINLAGHCD----PTNN 81
+++YWGQ N+ L+ C + I+NI F+ F + P N CD TN+
Sbjct: 3 LAIYWGQGPNQLRLSHFCQETSLDIINIGFINYFPDMSPGHWPGSNFGNQCDGSVYVTND 62
Query: 82 G--------CAGLSNEIKTCQGQGIKVXXXXX-XXXXXXXXXXXXXXRQVAQYLWDNF-- 130
G C + +I CQ G KV A +LW F
Sbjct: 63 GVVTKLLSGCHQIMEDIPICQAAGKKVLLSIGGAYPPDQSILSEDSAVAFATFLWGAFGP 122
Query: 131 -LGGQSSSRPLGDAVLDGIDFDIEGGTNQHWDELARALSNFSQQ---KKVYLAAAPQCPY 186
G RP GD V+DG DFDIE + + + Q +K YL+AAPQC
Sbjct: 123 VAEGWEGPRPFGDVVVDGFDFDIEHNGGFGYATMVNTFRQYFNQVPERKFYLSAAPQCII 182
Query: 187 PDAWLGGALGTGLFDYVWVQFYNNPPCQYSGNADNLKNSWN--QWTSNLSGSG 237
PDA L A+ FD++W+Q+YN C D ++N W + L S
Sbjct: 183 PDAQLSDAIFNAAFDFIWIQYYNTAACSAKSFIDTSLGTFNFDAWVTVLKASA 235
>pdb|2GEJ|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp-Man
pdb|2GEK|A Chain A, Crystal Structure Of Phosphatidylinositol
Mannosyltransferase (Pima) From Mycobacterium Smegmatis
In Complex With Gdp
Length = 406
Score = 32.0 bits (71), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 150 FDIEGGTNQHWDELARALSNFSQQKKVYLAAAPQCPYPDAWLGG 193
FD+ GG H +LA L + + V A+P PD + G
Sbjct: 31 FDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSG 74
>pdb|3E60|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
pdb|3E60|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Bartonella Henselae
Length = 424
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 25 SAGVISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCD-PTNN-G 82
++G +S+ +G G S+ ACS+G + I + A L G++ + LAG + P N
Sbjct: 153 ASGYVSIKYGLRGPNHSVVTACSTGAHAIGDAARLIALGDA---DVMLAGGTESPINRIS 209
Query: 83 CAGLS--NEIKTCQ 94
AG S + TC+
Sbjct: 210 LAGFSACRALSTCR 223
>pdb|3KZU|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|B Chain B, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
pdb|3KZU|C Chain C, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Ii From Brucella Melitensis
Length = 428
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 15/75 (20%)
Query: 25 SAGVISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGN--------SQTP--QINLAG 74
++G +S+ G S+ AC++G + I + A L FG+ +++P +I+LAG
Sbjct: 157 ASGHVSIKHKLRGPNHSVVTACATGTHAIGDAARLIAFGDADVMVAGGTESPVSRISLAG 216
Query: 75 HCDPTNNGCAGLSNE 89
C LS E
Sbjct: 217 FA-----ACKALSTE 226
>pdb|2GFW|A Chain A, Structure Of Wild Type E. Coli Fabf (Kasii)
Length = 427
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 26 AGVISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNS 65
AG +++ +G G S+A AC+SG + I + A + +G++
Sbjct: 158 AGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDA 197
>pdb|1B3N|A Chain A, Beta-Ketoacyl Carrier Protein Synthase As A Drug Target,
Implications From The Crystal Structure Of A Complex
With The Inhibitor Cerulenin.
pdb|1KAS|A Chain A, Beta-Ketoacyl-Acp Synthase Ii From Escherichia Coli
Length = 412
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 26 AGVISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNS 65
AG +++ +G G S+A AC+SG + I + A + +G++
Sbjct: 143 AGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDA 182
>pdb|2GFY|A Chain A, Structure Of E. Coli Fabf(K335a) Mutant With Covalently
Linked Dodecanoic Acid
Length = 427
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 26 AGVISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNS 65
AG +++ +G G S+A AC+SG + I + A + +G++
Sbjct: 158 AGHLTIMYGLRGPSISIATACTSGVHNIGHAARIIAYGDA 197
>pdb|3EBV|A Chain A, Crystal Structure Of Putative Chitinase A From
Streptomyces Coelicolor
Length = 302
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 145 LDGIDFDIEGGTNQHWDELA-RALSNFSQQKKVYLAAAPQCPYPDAWLGGALGTGL---- 199
DG+D D+E G N + A RALS + + L APQ + GG T L
Sbjct: 113 FDGVDIDLENGLNPTYXTQALRALSAKAGPDXI-LTXAPQTIDXQSTQGGYFQTALNVKD 171
Query: 200 -FDYVWVQFYNN 210
V Q+YN+
Sbjct: 172 ILTVVNXQYYNS 183
>pdb|1JUH|A Chain A, Crystal Structure Of Quercetin 2,3-Dioxygenase
pdb|1JUH|B Chain B, Crystal Structure Of Quercetin 2,3-Dioxygenase
pdb|1JUH|C Chain C, Crystal Structure Of Quercetin 2,3-Dioxygenase
pdb|1JUH|D Chain D, Crystal Structure Of Quercetin 2,3-Dioxygenase
pdb|1GQG|A Chain A, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Diethyldithiocarbamate
pdb|1GQG|B Chain B, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Diethyldithiocarbamate
pdb|1GQG|C Chain C, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Diethyldithiocarbamate
pdb|1GQG|D Chain D, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Diethyldithiocarbamate
pdb|1GQH|A Chain A, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Kojic Acid
pdb|1GQH|B Chain B, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Kojic Acid
pdb|1GQH|C Chain C, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Kojic Acid
pdb|1GQH|D Chain D, Quercetin 2,3-Dioxygenase In Complex With The Inhibitor
Kojic Acid
pdb|1H1I|A Chain A, Crystal Structure Of Quercetin 2,3-dioxygenase
Anaerobically Complexed With The Substrate Quercetn
pdb|1H1I|B Chain B, Crystal Structure Of Quercetin 2,3-dioxygenase
Anaerobically Complexed With The Substrate Quercetn
pdb|1H1I|C Chain C, Crystal Structure Of Quercetin 2,3-dioxygenase
Anaerobically Complexed With The Substrate Quercetn
pdb|1H1I|D Chain D, Crystal Structure Of Quercetin 2,3-dioxygenase
Anaerobically Complexed With The Substrate Quercetn
pdb|1H1M|A Chain A, Crystal Structure Of Quercetin 2,3-Dioxygenase
Anaerobically Complexed With The Substrate Kaempferol
pdb|1H1M|B Chain B, Crystal Structure Of Quercetin 2,3-Dioxygenase
Anaerobically Complexed With The Substrate Kaempferol
pdb|1H1M|C Chain C, Crystal Structure Of Quercetin 2,3-Dioxygenase
Anaerobically Complexed With The Substrate Kaempferol
pdb|1H1M|D Chain D, Crystal Structure Of Quercetin 2,3-Dioxygenase
Anaerobically Complexed With The Substrate Kaempferol
Length = 350
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 33 WGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDP 78
W Q+GNE SSG+YG V TF Q P + G P
Sbjct: 85 WAQSGNETQQTRVLSSGDYGSVPRNVTHTF-QIQDPDTEMTGVIVP 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.133 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,401,458
Number of Sequences: 62578
Number of extensions: 302410
Number of successful extensions: 561
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 500
Number of HSP's gapped (non-prelim): 24
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)