Query 044801
Match_columns 238
No_of_seqs 152 out of 920
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 06:54:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044801.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044801hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4701 Chitinase [Cell wall/m 100.0 5E-61 1.1E-65 437.9 17.7 236 1-236 1-245 (568)
2 cd02877 GH18_hevamine_XipI_cla 100.0 2.3E-55 4.9E-60 395.0 20.9 190 27-216 1-196 (280)
3 cd02871 GH18_chitinase_D-like 100.0 3.6E-33 7.9E-38 254.0 18.3 173 27-213 1-198 (312)
4 cd06546 GH18_CTS3_chitinase GH 100.0 2.3E-31 5E-36 236.5 18.1 169 28-211 1-189 (256)
5 COG3469 Chitinase [Carbohydrat 99.9 2E-27 4.4E-32 208.3 9.8 169 26-213 25-215 (332)
6 cd06545 GH18_3CO4_chitinase Th 99.9 1.1E-24 2.4E-29 192.4 16.2 161 29-211 1-166 (253)
7 cd06544 GH18_narbonin Narbonin 99.9 2E-24 4.4E-29 191.9 13.2 190 29-236 2-208 (253)
8 cd00598 GH18_chitinase-like Th 99.9 2.2E-23 4.7E-28 177.0 14.1 180 29-232 1-196 (210)
9 COG3325 ChiA Chitinase [Carboh 99.9 2.7E-23 5.9E-28 193.5 12.6 178 24-211 35-254 (441)
10 cd06542 GH18_EndoS-like Endo-b 99.9 3E-22 6.5E-27 176.5 14.1 160 28-211 2-179 (255)
11 cd02879 GH18_plant_chitinase_c 99.9 1.9E-21 4.1E-26 176.1 14.3 163 28-210 4-191 (299)
12 PF00704 Glyco_hydro_18: Glyco 99.9 4.8E-22 1E-26 179.9 6.9 173 28-211 2-195 (343)
13 cd06548 GH18_chitinase The GH1 99.8 1.7E-20 3.7E-25 171.2 14.1 172 29-211 1-212 (322)
14 cd02878 GH18_zymocin_alpha Zym 99.8 1.3E-20 2.8E-25 173.8 13.0 159 28-211 1-188 (345)
15 cd06543 GH18_PF-ChiA-like PF-C 99.8 6.2E-20 1.3E-24 166.4 13.1 155 40-211 15-182 (294)
16 cd02873 GH18_IDGF The IDGF's ( 99.8 1E-19 2.3E-24 171.7 13.3 167 28-210 1-222 (413)
17 cd02872 GH18_chitolectin_chito 99.8 1.2E-19 2.6E-24 167.4 12.6 166 29-211 1-191 (362)
18 smart00636 Glyco_18 Glycosyl h 99.8 1.5E-18 3.2E-23 158.0 14.2 164 28-211 1-187 (334)
19 cd02876 GH18_SI-CLP Stabilin-1 99.7 8E-17 1.7E-21 146.7 10.8 165 28-211 4-190 (318)
20 cd02874 GH18_CFLE_spore_hydrol 99.7 3E-16 6.5E-21 142.3 13.7 158 27-211 2-180 (313)
21 KOG2806 Chitinase [Carbohydrat 99.7 7.3E-16 1.6E-20 146.5 12.4 165 27-211 58-245 (432)
22 cd02875 GH18_chitobiase Chitob 99.5 3.8E-14 8.3E-19 131.7 11.0 111 87-210 67-189 (358)
23 cd06549 GH18_trifunctional GH1 99.4 9.6E-13 2.1E-17 119.2 12.4 157 29-211 2-172 (298)
24 COG3858 Predicted glycosyl hyd 97.4 0.00061 1.3E-08 64.5 7.8 115 87-211 150-284 (423)
25 PF02638 DUF187: Glycosyl hydr 97.1 0.0048 1E-07 56.6 10.9 119 83-210 69-263 (311)
26 cd06547 GH85_ENGase Endo-beta- 96.6 0.0034 7.4E-08 58.4 5.4 74 88-171 50-135 (339)
27 PF03644 Glyco_hydro_85: Glyco 95.2 0.012 2.7E-07 54.1 2.5 74 88-171 46-131 (311)
28 TIGR02402 trehalose_TreZ malto 89.0 2.3 4.9E-05 42.1 8.9 24 81-104 157-180 (542)
29 PRK09441 cytoplasmic alpha-amy 87.7 4 8.6E-05 39.5 9.5 24 81-104 78-101 (479)
30 TIGR02104 pulA_typeI pullulana 83.4 7.1 0.00015 39.0 9.2 21 84-104 229-249 (605)
31 TIGR02103 pullul_strch alpha-1 83.1 7.2 0.00016 41.1 9.3 81 85-171 405-517 (898)
32 TIGR02102 pullulan_Gpos pullul 81.9 8.3 0.00018 41.5 9.4 78 84-171 555-663 (1111)
33 TIGR02100 glgX_debranch glycog 81.7 8.7 0.00019 39.2 9.2 22 83-104 244-265 (688)
34 PF11340 DUF3142: Protein of u 81.6 4.2 9.1E-05 34.8 5.8 68 143-215 41-113 (181)
35 cd06591 GH31_xylosidase_XylS X 81.5 6.4 0.00014 36.0 7.5 62 83-154 65-159 (319)
36 cd02810 DHOD_DHPD_FMN Dihydroo 80.5 21 0.00045 31.8 10.3 100 84-206 83-196 (289)
37 PRK07259 dihydroorotate dehydr 79.9 8.8 0.00019 34.6 7.8 66 85-171 78-156 (301)
38 PRK03705 glycogen debranching 79.6 4.4 9.5E-05 41.2 6.2 21 84-104 242-262 (658)
39 PRK12313 glycogen branching en 79.3 14 0.0003 37.2 9.6 60 44-104 178-240 (633)
40 PRK05402 glycogen branching en 79.1 33 0.00071 35.2 12.4 60 44-104 273-335 (726)
41 PF14488 DUF4434: Domain of un 78.7 37 0.0008 28.3 12.8 120 48-178 31-159 (166)
42 PF00150 Cellulase: Cellulase 76.9 19 0.00041 31.0 8.8 151 48-211 32-204 (281)
43 PLN02960 alpha-amylase 75.7 39 0.00084 35.7 11.7 24 81-104 463-486 (897)
44 cd02932 OYE_YqiM_FMN Old yello 74.9 21 0.00045 32.8 8.8 23 82-104 75-97 (336)
45 cd06602 GH31_MGAM_SI_GAA This 74.2 14 0.0003 34.3 7.5 63 84-156 64-167 (339)
46 TIGR01370 cysRS possible cyste 73.9 12 0.00026 34.7 7.0 22 87-108 84-107 (315)
47 TIGR01515 branching_enzym alph 73.7 24 0.00051 35.5 9.5 23 82-104 204-226 (613)
48 PRK12568 glycogen branching en 73.3 84 0.0018 32.6 13.4 62 42-104 275-339 (730)
49 cd06592 GH31_glucosidase_KIAA1 72.9 13 0.00029 33.7 7.0 63 83-155 69-166 (303)
50 cd06594 GH31_glucosidase_YihQ 72.4 13 0.00027 34.2 6.7 23 82-104 69-91 (317)
51 PF14871 GHL6: Hypothetical gl 72.3 16 0.00035 29.3 6.6 21 84-104 44-64 (132)
52 PF13200 DUF4015: Putative gly 72.1 43 0.00093 31.1 10.1 71 141-211 134-229 (316)
53 cd02931 ER_like_FMN Enoate red 71.8 26 0.00057 33.0 8.9 22 83-104 82-103 (382)
54 cd06599 GH31_glycosidase_Aec37 71.2 16 0.00035 33.4 7.1 64 82-155 71-169 (317)
55 cd04740 DHOD_1B_like Dihydroor 70.9 19 0.0004 32.3 7.4 76 85-182 76-163 (296)
56 PLN02877 alpha-amylase/limit d 70.8 20 0.00044 38.1 8.5 20 85-104 467-486 (970)
57 PF07172 GRP: Glycine rich pro 70.7 2.7 5.7E-05 32.2 1.6 25 1-25 1-25 (95)
58 PRK14706 glycogen branching en 69.3 48 0.001 33.6 10.6 62 42-104 173-237 (639)
59 cd06600 GH31_MGAM-like This fa 67.9 25 0.00054 32.1 7.7 64 83-156 63-162 (317)
60 cd02071 MM_CoA_mut_B12_BD meth 67.5 9.3 0.0002 29.8 4.2 62 28-108 28-90 (122)
61 cd02069 methionine_synthase_B1 66.9 4.4 9.6E-05 35.2 2.4 27 83-109 153-179 (213)
62 cd04733 OYE_like_2_FMN Old yel 66.9 34 0.00074 31.5 8.4 22 83-104 81-102 (338)
63 TIGR00736 nifR3_rel_arch TIM-b 66.6 29 0.00062 30.7 7.5 98 84-206 55-168 (231)
64 cd04734 OYE_like_3_FMN Old yel 65.7 38 0.00083 31.4 8.5 21 84-104 77-97 (343)
65 PF10566 Glyco_hydro_97: Glyco 65.6 11 0.00024 34.3 4.7 66 82-164 71-139 (273)
66 cd04747 OYE_like_5_FMN Old yel 65.6 41 0.00089 31.6 8.7 22 83-104 77-98 (361)
67 cd02930 DCR_FMN 2,4-dienoyl-Co 65.3 43 0.00092 31.0 8.8 22 83-104 76-97 (353)
68 PRK14705 glycogen branching en 64.1 29 0.00062 37.9 8.2 62 42-104 771-835 (1224)
69 PF00128 Alpha-amylase: Alpha 63.1 9.1 0.0002 33.2 3.7 24 81-104 49-72 (316)
70 PRK02261 methylaspartate mutas 62.6 17 0.00038 29.3 5.0 63 27-108 31-94 (137)
71 KOG2331 Predicted glycosylhydr 62.5 17 0.00037 35.3 5.5 70 92-171 119-198 (526)
72 cd02801 DUS_like_FMN Dihydrour 61.7 26 0.00055 29.8 6.2 58 93-171 50-122 (231)
73 smart00642 Aamy Alpha-amylase 61.6 22 0.00048 29.4 5.6 57 47-104 29-90 (166)
74 cd06597 GH31_transferase_CtsY 59.5 27 0.00059 32.3 6.3 21 83-103 84-104 (340)
75 COG0572 Udk Uridine kinase [Nu 59.3 25 0.00055 30.9 5.7 70 97-173 6-83 (218)
76 cd02070 corrinoid_protein_B12- 58.2 16 0.00034 31.1 4.2 26 83-108 147-174 (201)
77 PF13204 DUF4038: Protein of u 58.0 76 0.0017 28.7 8.8 116 85-211 89-213 (289)
78 PRK07565 dihydroorotate dehydr 57.0 77 0.0017 29.1 8.9 78 83-182 86-174 (334)
79 cd02929 TMADH_HD_FMN Trimethyl 56.9 80 0.0017 29.6 9.1 23 82-104 81-103 (370)
80 cd06598 GH31_transferase_CtsZ 56.6 36 0.00078 31.1 6.5 62 82-154 68-164 (317)
81 cd06589 GH31 The enzymes of gl 56.5 27 0.00058 30.9 5.6 54 82-155 64-117 (265)
82 cd06417 GH25_LysA-like LysA is 56.0 39 0.00085 28.4 6.3 17 84-100 36-52 (195)
83 COG1523 PulA Type II secretory 55.3 30 0.00065 35.5 6.2 21 84-104 265-285 (697)
84 cd06522 GH25_AtlA-like AtlA is 54.6 58 0.0013 27.4 7.1 72 84-171 42-122 (192)
85 PRK03170 dihydrodipicolinate s 54.0 1.4E+02 0.0031 26.5 9.9 45 84-129 22-66 (292)
86 COG0826 Collagenase and relate 54.0 50 0.0011 30.9 7.1 99 49-185 25-123 (347)
87 PF01055 Glyco_hydro_31: Glyco 54.0 40 0.00086 31.9 6.6 61 83-153 82-179 (441)
88 cd06523 GH25_PlyB-like PlyB is 52.9 69 0.0015 26.6 7.2 71 83-170 38-113 (177)
89 PF04309 G3P_antiterm: Glycero 52.6 26 0.00056 29.8 4.5 34 85-124 32-68 (175)
90 cd04739 DHOD_like Dihydroorota 51.5 1.2E+02 0.0027 27.7 9.3 78 84-183 85-173 (325)
91 PLN03244 alpha-amylase; Provis 51.0 30 0.00065 36.2 5.4 24 81-104 438-461 (872)
92 PRK14510 putative bifunctional 50.9 64 0.0014 35.3 8.2 23 82-104 245-267 (1221)
93 PRK10426 alpha-glucosidase; Pr 50.8 48 0.001 33.6 6.9 61 82-152 267-361 (635)
94 TIGR02403 trehalose_treC alpha 50.5 30 0.00066 34.1 5.4 60 44-104 34-95 (543)
95 COG1649 Uncharacterized protei 49.9 24 0.00053 34.0 4.4 118 82-210 113-309 (418)
96 cd06595 GH31_xylosidase_XylS-l 49.4 64 0.0014 29.0 6.9 22 83-104 73-94 (292)
97 PRK10785 maltodextrin glucosid 49.4 25 0.00054 35.2 4.6 56 47-104 189-246 (598)
98 PRK10550 tRNA-dihydrouridine s 49.0 36 0.00077 31.3 5.2 89 96-206 61-168 (312)
99 cd02911 arch_FMN Archeal FMN-b 48.8 74 0.0016 27.9 7.0 63 85-169 60-137 (233)
100 PF00724 Oxidored_FMN: NADH:fl 48.8 1E+02 0.0022 28.5 8.2 22 83-104 79-100 (341)
101 cd02067 B12-binding B12 bindin 48.3 17 0.00038 27.8 2.7 60 30-108 30-90 (119)
102 cd06412 GH25_CH-type CH-type ( 48.2 50 0.0011 27.9 5.7 17 84-100 39-55 (199)
103 PRK13523 NADPH dehydrogenase N 48.0 2.3E+02 0.005 26.2 10.8 22 83-104 80-101 (337)
104 PF01120 Alpha_L_fucos: Alpha- 47.7 1E+02 0.0022 28.5 8.2 82 84-171 138-236 (346)
105 PRK10933 trehalose-6-phosphate 47.4 34 0.00074 33.9 5.2 59 45-104 41-101 (551)
106 COG1979 Uncharacterized oxidor 45.2 16 0.00034 34.5 2.2 51 83-133 71-121 (384)
107 PRK11815 tRNA-dihydrouridine s 45.2 27 0.00058 32.3 3.8 56 95-171 62-132 (333)
108 cd02803 OYE_like_FMN_family Ol 44.1 54 0.0012 29.6 5.6 117 83-207 76-249 (327)
109 PRK05286 dihydroorotate dehydr 43.5 1.2E+02 0.0027 28.0 8.0 84 84-183 125-221 (344)
110 cd06416 GH25_Lys1-like Lys-1 i 42.7 85 0.0018 26.3 6.3 17 84-100 39-55 (196)
111 PRK05096 guanosine 5'-monophos 42.7 1.2E+02 0.0026 28.6 7.7 74 85-180 83-157 (346)
112 cd02933 OYE_like_FMN Old yello 42.7 2.8E+02 0.006 25.6 10.8 22 83-104 76-97 (338)
113 PRK02506 dihydroorotate dehydr 42.2 1.5E+02 0.0032 27.1 8.2 79 84-184 77-168 (310)
114 cd06593 GH31_xylosidase_YicI Y 42.0 62 0.0014 29.1 5.7 22 83-104 65-86 (308)
115 TIGR02370 pyl_corrinoid methyl 41.4 22 0.00048 30.2 2.5 25 84-108 150-176 (197)
116 TIGR02456 treS_nterm trehalose 41.3 47 0.001 32.7 5.1 59 45-104 36-96 (539)
117 cd04735 OYE_like_4_FMN Old yel 41.1 1.7E+02 0.0037 27.1 8.5 23 82-104 76-98 (353)
118 cd06604 GH31_glucosidase_II_Ma 41.1 86 0.0019 28.8 6.5 22 83-104 63-84 (339)
119 PF14587 Glyco_hydr_30_2: O-Gl 40.8 72 0.0016 30.5 6.0 78 83-171 103-213 (384)
120 cd02940 DHPD_FMN Dihydropyrimi 40.6 1.7E+02 0.0036 26.4 8.2 76 87-183 87-178 (299)
121 COG0296 GlgB 1,4-alpha-glucan 40.4 60 0.0013 33.0 5.6 62 41-104 169-234 (628)
122 cd06601 GH31_lyase_GLase GLase 40.3 1.1E+02 0.0023 28.4 7.0 60 83-153 63-132 (332)
123 cd04738 DHOD_2_like Dihydrooro 40.1 1.6E+02 0.0034 27.0 8.1 71 86-171 117-196 (327)
124 PLN02229 alpha-galactosidase 39.8 1.5E+02 0.0033 28.7 8.1 78 84-182 128-216 (427)
125 TIGR01037 pyrD_sub1_fam dihydr 39.5 1.4E+02 0.003 26.7 7.5 64 87-171 79-156 (300)
126 TIGR00674 dapA dihydrodipicoli 39.2 2.3E+02 0.005 25.2 8.9 45 84-129 19-63 (285)
127 PRK15108 biotin synthase; Prov 38.8 1.4E+02 0.0029 27.8 7.5 15 140-154 142-156 (345)
128 cd06525 GH25_Lyc-like Lyc mura 38.6 97 0.0021 25.7 5.9 17 84-100 38-54 (184)
129 TIGR00742 yjbN tRNA dihydrouri 37.7 45 0.00097 30.8 4.0 56 95-171 52-122 (318)
130 PF03537 Glyco_hydro_114: Glyc 36.7 32 0.0007 24.7 2.4 21 87-107 39-61 (74)
131 PF02569 Pantoate_ligase: Pant 36.7 51 0.0011 30.1 4.1 42 51-103 48-92 (280)
132 PLN03231 putative alpha-galact 36.3 2.7E+02 0.0058 26.3 9.0 43 139-183 171-217 (357)
133 PF01183 Glyco_hydro_25: Glyco 36.2 1.5E+02 0.0033 24.2 6.8 106 84-211 36-155 (181)
134 cd06419 GH25_muramidase_2 Unch 34.9 1.3E+02 0.0028 25.5 6.2 17 84-100 46-62 (190)
135 TIGR00737 nifR3_yhdG putative 34.7 1.3E+02 0.0028 27.4 6.5 56 95-171 60-130 (319)
136 PLN02495 oxidoreductase, actin 34.0 3.1E+02 0.0067 26.1 9.1 81 84-185 98-194 (385)
137 cd04741 DHOD_1A_like Dihydroor 33.4 3E+02 0.0066 24.8 8.7 78 84-184 74-168 (294)
138 PRK08318 dihydropyrimidine deh 32.5 3.1E+02 0.0067 25.9 9.0 76 88-184 88-179 (420)
139 PF07364 DUF1485: Protein of u 32.4 2.4E+02 0.0053 25.7 7.9 88 83-181 44-137 (292)
140 PLN00196 alpha-amylase; Provis 31.5 35 0.00075 32.9 2.3 24 81-104 89-112 (428)
141 cd00951 KDGDH 5-dehydro-4-deox 31.0 1.5E+02 0.0032 26.6 6.2 46 84-130 21-66 (289)
142 COG3882 FkbH Predicted enzyme 30.7 47 0.001 33.0 3.0 44 139-184 237-280 (574)
143 cd06413 GH25_muramidase_1 Unch 30.4 1.3E+02 0.0029 25.0 5.5 17 84-100 41-57 (191)
144 PF00834 Ribul_P_3_epim: Ribul 30.1 94 0.002 26.7 4.6 63 140-210 76-138 (201)
145 PRK09490 metH B12-dependent me 30.0 58 0.0012 35.7 3.9 27 84-110 817-843 (1229)
146 TIGR01305 GMP_reduct_1 guanosi 29.6 2.7E+02 0.0058 26.3 7.7 67 85-172 82-149 (343)
147 PLN02808 alpha-galactosidase 29.1 2.6E+02 0.0057 26.7 7.7 78 84-182 97-186 (386)
148 PRK14511 maltooligosyl trehalo 28.6 1.2E+02 0.0026 32.2 5.8 57 47-104 30-89 (879)
149 cd06524 GH25_YegX-like YegX is 28.6 1.9E+02 0.0041 24.1 6.2 17 84-100 42-58 (194)
150 COG1501 Alpha-glucosidases, fa 27.6 1.8E+02 0.004 30.3 6.9 64 82-155 319-416 (772)
151 PLN02692 alpha-galactosidase 27.5 2.6E+02 0.0057 27.0 7.5 78 84-181 121-209 (412)
152 PRK10658 putative alpha-glucos 27.2 1.8E+02 0.0039 29.7 6.7 22 83-104 324-345 (665)
153 PF13899 Thioredoxin_7: Thiore 26.9 68 0.0015 22.7 2.7 24 85-108 5-28 (82)
154 cd06415 GH25_Cpl1-like Cpl-1 l 25.8 2.3E+02 0.005 23.7 6.2 17 84-100 38-54 (196)
155 PF04127 DFP: DNA / pantothena 25.5 2E+02 0.0042 24.4 5.7 82 96-184 2-93 (185)
156 cd06414 GH25_LytC-like The Lyt 25.3 2.1E+02 0.0046 23.8 5.9 18 83-100 41-58 (191)
157 PRK08187 pyruvate kinase; Vali 25.3 3.3E+02 0.0071 26.9 7.9 54 96-171 133-186 (493)
158 PF04273 DUF442: Putative phos 25.2 3.2E+02 0.007 21.1 6.9 67 87-170 17-85 (110)
159 PLN02361 alpha-amylase 25.0 61 0.0013 31.0 2.7 24 81-104 73-96 (401)
160 COG0414 PanC Panthothenate syn 22.9 1.1E+02 0.0023 28.1 3.7 44 51-103 48-92 (285)
161 PLN02447 1,4-alpha-glucan-bran 22.9 1.5E+02 0.0033 30.9 5.2 59 45-104 259-320 (758)
162 TIGR02401 trehalose_TreY malto 22.8 1.8E+02 0.004 30.6 5.9 60 44-104 23-85 (825)
163 cd07937 DRE_TIM_PC_TC_5S Pyruv 22.5 4.7E+02 0.01 23.2 7.9 72 84-171 118-191 (275)
164 TIGR02455 TreS_stutzeri trehal 22.4 1.7E+02 0.0038 30.0 5.4 28 77-104 123-150 (688)
165 PTZ00301 uridine kinase; Provi 22.2 1.9E+02 0.0041 24.9 5.0 13 98-110 2-14 (210)
166 TIGR03249 KdgD 5-dehydro-4-deo 22.0 2.6E+02 0.0057 25.0 6.2 46 84-130 26-71 (296)
167 PRK15452 putative protease; Pr 21.4 1.6E+02 0.0034 28.6 4.8 37 84-126 46-82 (443)
168 TIGR02313 HpaI-NOT-DapA 2,4-di 21.4 2.7E+02 0.0058 25.1 6.1 46 84-130 21-66 (294)
169 PF03102 NeuB: NeuB family; I 21.2 85 0.0018 27.9 2.7 22 87-108 103-124 (241)
170 TIGR02082 metH 5-methyltetrahy 20.9 66 0.0014 35.1 2.3 28 83-110 797-824 (1178)
171 cd07491 Peptidases_S8_7 Peptid 20.6 1.2E+02 0.0025 26.6 3.5 51 44-107 96-146 (247)
172 KOG3858 Ephrin, ligand for Eph 20.5 1.3E+02 0.0028 26.9 3.6 17 92-108 147-163 (233)
173 PRK13477 bifunctional pantoate 20.3 1.2E+02 0.0026 30.0 3.8 41 51-102 46-89 (512)
174 cd04501 SGNH_hydrolase_like_4 20.0 1.1E+02 0.0024 24.6 3.0 46 48-103 57-102 (183)
No 1
>KOG4701 consensus Chitinase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=5e-61 Score=437.87 Aligned_cols=236 Identities=38% Similarity=0.719 Sum_probs=214.9
Q ss_pred CCCcchhhHHHHHHHHHHHhhccCCCcceEEEeCCC--CCCccccccccCCCccEEEEceeeccCCCCCcccccCCCCCC
Q 044801 1 MAHQFTLGKFLFCLLQLAALFTYTSAGVISVYWGQN--GNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDP 78 (238)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ywg~~--~~~~~L~~~c~~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~ 78 (238)
|-++.+++.|++|++.-+-..+-++..+|++||||| ++|++|+.+|.+..||+|+|+|++.|++++.|++||+++|.+
T Consensus 1 M~L~~~illF~~F~~l~lsk~~~~~~t~IA~YWGQN~aG~q~~Ls~yC~~~~yd~~~lsFL~~F~~~~Tp~LNfAn~Csd 80 (568)
T KOG4701|consen 1 MRLISSLLLFVYFARLALSKLNLTNQTAIAGYWGQNLAGDQKRLSSYCQNTTYDAIILSFLIDFNVDGTPVLNFANLCSD 80 (568)
T ss_pred CcHHHHHHHHHHHHHccccccccccccceEEEeccccccchhhhhhhhccCccceeeeehhhhcCCCCCceeehhcccCc
Confidence 666777765655542212233457889999999999 789999999999999999999999999999999999999988
Q ss_pred CCC----CccchHHHHHHHHhCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCC
Q 044801 79 TNN----GCAGLSNEIKTCQGQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEG 154 (238)
Q Consensus 79 ~~~----~~~~l~~~I~~~q~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~ 154 (238)
... .|.++++||+.||++|+|||||+||+.|+|.+.++++|+.||+.|||.||+|.+..|||++.++||||||+|.
T Consensus 81 ~~~~~l~~CTqi~~di~~CQS~GiKVlLSLGG~~GnYs~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE~ 160 (568)
T KOG4701|consen 81 SDTFSLKKCTQIETDIQVCQSNGIKVLLSLGGYNGNYSLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIEK 160 (568)
T ss_pred cccccccccchhhhHHHHHHhcCeEEEEeccCcccceeeccchhHHHHHHHHHHHhcCCccccCcccchhccceeeeeec
Confidence 654 5999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhhc--CCCceEEEecCCCCCCCcchhhhhccCcccEEEeeecCCCCCcCC-CCCcchHHHHHHhhh
Q 044801 155 GTNQHWDELARALSNFS--QQKKVYLAAAPQCPYPDAWLGGALGTGLFDYVWVQFYNNPPCQYS-GNADNLKNSWNQWTS 231 (238)
Q Consensus 155 ~~~~~~~~li~~LR~~~--~~~~~liTaAP~~~~~d~~~~~~~~~~~~D~i~vqfYnn~~c~~~-~~~~~~~~~w~~w~~ 231 (238)
+.+.+|.+|+++||++| .+++|+|++|||||+||+.++.++....|||++||||||++|.++ |++++.||+|.+|+.
T Consensus 161 g~~~~ysaLA~~L~~~Fa~~~r~yYLsaAPQCP~PD~~~G~aL~~~~fDf~~IQFYNN~~CS~SsG~~Q~~fDsW~~ya~ 240 (568)
T KOG4701|consen 161 GTNTAYSALAKRLLEIFASDPRRYYLSAAPQCPVPDHTLGKALSENSFDFLSIQFYNNSTCSGSSGSRQSTFDAWVEYAE 240 (568)
T ss_pred CCcchHHHHHHHHHHHHccCCceEEeccCCCCCCCchhhhhhhhccccceEEEEeecCCCcccccCcccccHHHHHHHHh
Confidence 99999999999999998 678899999999999999999999999999999999999999998 888888899999998
Q ss_pred ccCCC
Q 044801 232 NLSGS 236 (238)
Q Consensus 232 ~~~~~ 236 (238)
++..+
T Consensus 241 ~~a~n 245 (568)
T KOG4701|consen 241 DSAYN 245 (568)
T ss_pred hhccc
Confidence 86654
No 2
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=100.00 E-value=2.3e-55 Score=395.00 Aligned_cols=190 Identities=59% Similarity=1.099 Sum_probs=176.2
Q ss_pred cceEEEeCCCCCCccccccccCCCccEEEEceeeccCCCCCcccccCCCCCCCCC-CccchHHHHHHHHhCCCeEEEEec
Q 044801 27 GVISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNN-GCAGLSNEIKTCQGQGIKVLLSIG 105 (238)
Q Consensus 27 ~~v~~Ywg~~~~~~~L~~~c~~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~-~~~~l~~~I~~~q~~g~KVlLSiG 105 (238)
++|++||||+.++++|+++|+++.||+|+|||++.+++++.|.+||++||.+... .|++++++|++||++|+|||||||
T Consensus 1 ~~v~vyWGq~~~~~~L~~~C~~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~G~KVlLSIG 80 (280)
T cd02877 1 GNIAVYWGQNSDEGSLREYCDTGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSKGKKVLLSIG 80 (280)
T ss_pred CCeEEECCCCCCCCCHHHHhCCCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHHCCCEEEEEcc
Confidence 4799999999999999999999999999999999998878899999999987543 799999999999999999999999
Q ss_pred CCCCcccCCCHHHHHHHHHHHHHhhcCCCC--CcccccccccceeeeecCCCCchhHHHHHHHHHhhcC---CCceEEEe
Q 044801 106 GASGSYSLSSADDARQVAQYLWDNFLGGQS--SSRPLGDAVLDGIDFDIEGGTNQHWDELARALSNFSQ---QKKVYLAA 180 (238)
Q Consensus 106 G~~~~~~~~s~~~~~~fa~~l~~~f~~g~s--~~r~~~~~~lDGiDiD~E~~~~~~~~~li~~LR~~~~---~~~~liTa 180 (238)
||++++.++++++|++||++||++|+++.+ ..|||++++|||||||||++...+|.+|+++||+++. +++|+||+
T Consensus 81 G~~~~~~~~s~~~a~~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~~~~~~~l~~~LR~~~~~~~~~~~~LTa 160 (280)
T cd02877 81 GAGGSYSLSSDADAKDFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGSPENYDALAKRLRSLFASDPSKKYYLTA 160 (280)
T ss_pred CCCCCcCCCCHHHHHHHHHHHHHHhCCccccccccccccccccceEEecccCCccCHHHHHHHHHHHhhcccCCceEEEe
Confidence 999999999999999999999999987754 6899999999999999999988899999999999882 37899999
Q ss_pred cCCCCCCCcchhhhhccCcccEEEeeecCCCCCcCC
Q 044801 181 APQCPYPDAWLGGALGTGLFDYVWVQFYNNPPCQYS 216 (238)
Q Consensus 181 AP~~~~~d~~~~~~~~~~~~D~i~vqfYnn~~c~~~ 216 (238)
||||++|+.++..++....+|||||||||++.|++.
T Consensus 161 APq~~~~d~~~~~~i~~~~~D~i~vqfYn~~~c~~~ 196 (280)
T cd02877 161 APQCPYPDASLGDAIATGLFDFIFVQFYNNPCCSYA 196 (280)
T ss_pred ccccCCcchhHHHHHccCccCEEEEEEecCcccccc
Confidence 999999999888888778999999999999999864
No 3
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=100.00 E-value=3.6e-33 Score=253.97 Aligned_cols=173 Identities=26% Similarity=0.412 Sum_probs=133.7
Q ss_pred cceEEEeCCCCCCc-cc--cccccCCCccEEEEceeeccCCCCCc-ccccCCCCCCCCCCccchHHHHHHHHhCCCeEEE
Q 044801 27 GVISVYWGQNGNEG-SL--ADACSSGNYGIVNIAFLTTFGNSQTP-QINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLL 102 (238)
Q Consensus 27 ~~v~~Ywg~~~~~~-~L--~~~c~~~~~dvV~laF~~~~~~g~~p-~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlL 102 (238)
++|++||++|.... .. +..-+++.||||++||+...+++..+ .++.... +....|.++.++|+.||++|+||||
T Consensus 1 k~~vgY~~~w~~~~~~~~~~~~~~~~~yt~i~~AF~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~q~~G~KVll 78 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGRQDLDDVPSKYNVINVAFAEPTSDGGGEVTFNNGSS--PGGYSPAEFKADIKALQAKGKKVLI 78 (312)
T ss_pred CeEEEecCcccCCCCCCCCCcccCCCCCCEEEEcceeecCCCceeEeecccCC--cccCChHHHHHHHHHHHHCCCEEEE
Confidence 47899999885421 11 22235688999999999988665322 2232211 2233678899999999999999999
Q ss_pred EecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCCc--------hhHHHHHHHHHhhcCCC
Q 044801 103 SIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGTN--------QHWDELARALSNFSQQK 174 (238)
Q Consensus 103 SiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~~--------~~~~~li~~LR~~~~~~ 174 (238)
||||+.++..+.+++.|++||++|++ ++++|+|||||||||++.. .++..++++||+.+ ++
T Consensus 79 SiGG~~~~~~~~~~~~~~~fa~sl~~----------~~~~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr~~~-~~ 147 (312)
T cd02871 79 SIGGANGHVDLNHTAQEDNFVDSIVA----------IIKEYGFDGLDIDLESGSNPLNATPVITNLISALKQLKDHY-GP 147 (312)
T ss_pred EEeCCCCccccCCHHHHHHHHHHHHH----------HHHHhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHHHHc-CC
Confidence 99999988778889999999999986 4589999999999999852 57888999999887 45
Q ss_pred ceEEEecCCCCCCCc-----------ch--hhhhccCcccEEEeeecCCCCC
Q 044801 175 KVYLAAAPQCPYPDA-----------WL--GGALGTGLFDYVWVQFYNNPPC 213 (238)
Q Consensus 175 ~~liTaAP~~~~~d~-----------~~--~~~~~~~~~D~i~vqfYnn~~c 213 (238)
+|+||+||||++++. +. ...+ ...+|||||||||++.|
T Consensus 148 ~~~lT~AP~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~D~invqfYn~~~~ 198 (312)
T cd02871 148 NFILTMAPETPYVQGGYAAYGGIWGAYLPLIDNL-RDDLTWLNVQYYNSGGM 198 (312)
T ss_pred CeEEEECCCcccccCcccccccCCcchhHHHHHh-hhheeEEEEeeccCCCc
Confidence 899999999998863 21 1222 45899999999999944
No 4
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=99.98 E-value=2.3e-31 Score=236.47 Aligned_cols=169 Identities=24% Similarity=0.270 Sum_probs=126.2
Q ss_pred ceEEEeCCCCCC-c----ccc-ccccCCCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEE
Q 044801 28 VISVYWGQNGNE-G----SLA-DACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVL 101 (238)
Q Consensus 28 ~v~~Ywg~~~~~-~----~L~-~~c~~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVl 101 (238)
++++||+.|... . .|. ......+++||++||+....+|. +.+.++ .+....+.++.++|+.||++|+|||
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G~---l~~~d~-~~~~~~~~~~~~~i~~~~~~g~KVl 76 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDGN---IHLNDH-PPDHPRFTTLWTELAILQSSGVKVM 76 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCCe---EEECCC-CCCcchhhHHHHHHHHHHhCCCEEE
Confidence 578999988421 1 121 12235689999999999887664 334332 2222245678999999999999999
Q ss_pred EEecCCC-CcccC--CCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC-chhHHHHHHHHHhhcCCCceE
Q 044801 102 LSIGGAS-GSYSL--SSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT-NQHWDELARALSNFSQQKKVY 177 (238)
Q Consensus 102 LSiGG~~-~~~~~--~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~-~~~~~~li~~LR~~~~~~~~l 177 (238)
||||||+ ++++. .+++.|++|++++.+ .+++|+|||||||||+|. ..+|..|+++||+.+ +++|+
T Consensus 77 lSiGG~~~~~fs~~a~~~~~r~~f~~s~~~----------~~~~~~~DGiDiDwE~p~~~~~~~~ll~~Lr~~~-~~~~~ 145 (256)
T cd06546 77 GMLGGAAPGSFSRLDDDDEDFERYYGQLRD----------MIRRRGLDGLDLDVEEPMSLDGIIRLIDRLRSDF-GPDFI 145 (256)
T ss_pred EEECCCCCCCcccccCCHHHHHHHHHHHHH----------HHHHhCCCceEEeeecCCCHhHHHHHHHHHHHHh-CCCcE
Confidence 9999996 44443 566789999998764 568999999999999985 568999999999988 57899
Q ss_pred EEecCCCCCCCc---c-----hhhhh--ccCcccEEEeeecCCC
Q 044801 178 LAAAPQCPYPDA---W-----LGGAL--GTGLFDYVWVQFYNNP 211 (238)
Q Consensus 178 iTaAP~~~~~d~---~-----~~~~~--~~~~~D~i~vqfYnn~ 211 (238)
||+||+|+.... . +..+. ....+||+|+||||++
T Consensus 146 lT~Ap~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~ 189 (256)
T cd06546 146 ITLAPVASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGF 189 (256)
T ss_pred EEECCccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCC
Confidence 999999975321 1 22222 2578999999999997
No 5
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.94 E-value=2e-27 Score=208.30 Aligned_cols=169 Identities=25% Similarity=0.443 Sum_probs=134.0
Q ss_pred CcceEEEeCCCCC-------Ccc---ccccccCCCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHh
Q 044801 26 AGVISVYWGQNGN-------EGS---LADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQG 95 (238)
Q Consensus 26 ~~~v~~Ywg~~~~-------~~~---L~~~c~~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~ 95 (238)
...++||||+|.+ +++ +.....+.+|++|.++|.... |.+|++- |+..+.++++++|+.+++
T Consensus 25 ~KvLvGyWHnw~sgaaDgyq~gs~adial~d~~~~ynvv~V~Fmk~~--g~iptf~------P~~~~daeFr~~v~aLna 96 (332)
T COG3469 25 NKVLVGYWHNWKSGAADGYQQGSSADIALADTPRNYNVVTVSFMKGA--GDIPTFK------PYNDPDAEFRAQVGALNA 96 (332)
T ss_pred cceEEEeeecccccccccccccceeeeEeccCCcccceEEEEEeecC--CCCcccC------cCCCCHHHHHHHHHHhhc
Confidence 3488999999953 222 333335678999999998754 4566532 444456899999999999
Q ss_pred CCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC-----c-hhHHHHHHHHHh
Q 044801 96 QGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT-----N-QHWDELARALSN 169 (238)
Q Consensus 96 ~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~-----~-~~~~~li~~LR~ 169 (238)
+|+-||||+||+.++..|...+ .++||++|. |+++.|||||+|||+|... + .-..++++.+|+
T Consensus 97 eGkavllsLGGAdghIeL~~~q-E~~fv~eii----------rlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~ 165 (332)
T COG3469 97 EGKAVLLSLGGADGHIELKAGQ-EQAFVNEII----------RLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKD 165 (332)
T ss_pred cCcEEEEEccCccceEEeccch-HHHHHHHHH----------HHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHH
Confidence 9999999999999999998776 689999875 7889999999999999864 2 256788899999
Q ss_pred hc--CCCceEEEecCCCCCCCc--chhhhhc--cCcccEEEeeecCCCCC
Q 044801 170 FS--QQKKVYLAAAPQCPYPDA--WLGGALG--TGLFDYVWVQFYNNPPC 213 (238)
Q Consensus 170 ~~--~~~~~liTaAP~~~~~d~--~~~~~~~--~~~~D~i~vqfYnn~~c 213 (238)
++ .|++|+|||||+.||... .+-++++ .+++|+|++|+||++.-
T Consensus 166 hyk~~Gk~f~itMAPEfPYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGd 215 (332)
T COG3469 166 HYKNQGKNFFITMAPEFPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGD 215 (332)
T ss_pred HHHhcCCceEEEecCCCceecCCcccchHHHHHhhHHhhhhHHHhcCCCC
Confidence 87 689999999999999653 2334443 68899999999999933
No 6
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=99.93 E-value=1.1e-24 Score=192.36 Aligned_cols=161 Identities=20% Similarity=0.279 Sum_probs=127.0
Q ss_pred eEEEeCCCCCCccccccccCCCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEecCCC
Q 044801 29 ISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSIGGAS 108 (238)
Q Consensus 29 v~~Ywg~~~~~~~L~~~c~~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSiGG~~ 108 (238)
|+|||..|.....++..|....++||+++|+...++|.. .+.. .+..+...++.||++|+|||+||||+.
T Consensus 1 vigyy~~w~~~~~~~~~~~~~~lThv~~~f~~i~~~G~l---~~~~-------~~~~~~~~~~~~~~~~~kvl~sigg~~ 70 (253)
T cd06545 1 VVGYLPNYDDLNALSPTIDFSKLTHINLAFANPDANGTL---NANP-------VRSELNSVVNAAHAHNVKILISLAGGS 70 (253)
T ss_pred CEEEeCCcccccCCcccCChhhCCeEEEEEEEECCCCeE---EecC-------cHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 589999997655578888899999999999998777642 2221 235678889999999999999999987
Q ss_pred Ccc---cCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCCc--hhHHHHHHHHHhhcCCCceEEEecCC
Q 044801 109 GSY---SLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGTN--QHWDELARALSNFSQQKKVYLAAAPQ 183 (238)
Q Consensus 109 ~~~---~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~~--~~~~~li~~LR~~~~~~~~liTaAP~ 183 (238)
.+. .+.+++.|++|+++|++. +.+|+|||||||||++.. .+|..|+++||+.++..+++||+|+.
T Consensus 71 ~~~~~~~~~~~~~r~~fi~~lv~~----------~~~~~~DGIdiDwE~~~~~~~~~~~fv~~Lr~~l~~~~~~lt~av~ 140 (253)
T cd06545 71 PPEFTAALNDPAKRKALVDKIINY----------VVSYNLDGIDVDLEGPDVTFGDYLVFIRALYAALKKEGKLLTAAVS 140 (253)
T ss_pred CCcchhhhcCHHHHHHHHHHHHHH----------HHHhCCCceeEEeeccCccHhHHHHHHHHHHHHHhhcCcEEEEEcc
Confidence 432 346788999999999874 589999999999999864 68999999999988555789999987
Q ss_pred CCCCCcchhhhhccCcccEEEeeecCCC
Q 044801 184 CPYPDAWLGGALGTGLFDYVWVQFYNNP 211 (238)
Q Consensus 184 ~~~~d~~~~~~~~~~~~D~i~vqfYnn~ 211 (238)
+..... +...+ ...+|+|+||+||..
T Consensus 141 ~~~~~~-~~~~~-~~~vD~i~vMtYD~~ 166 (253)
T cd06545 141 SWNGGA-VSDST-LAYFDFINIMSYDAT 166 (253)
T ss_pred Cccccc-ccHHH-HhhCCEEEEEcCcCC
Confidence 643222 22222 367999999999974
No 7
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=99.92 E-value=2e-24 Score=191.91 Aligned_cols=190 Identities=19% Similarity=0.189 Sum_probs=125.9
Q ss_pred eEEEeCCCCCCccccccccCC-CccEEEEceeeccCCCCCc-ccccCCCCCCCCCCccchHHHHHHHHh--CCCeEEEEe
Q 044801 29 ISVYWGQNGNEGSLADACSSG-NYGIVNIAFLTTFGNSQTP-QINLAGHCDPTNNGCAGLSNEIKTCQG--QGIKVLLSI 104 (238)
Q Consensus 29 v~~Ywg~~~~~~~L~~~c~~~-~~dvV~laF~~~~~~g~~p-~~nl~~~~~~~~~~~~~l~~~I~~~q~--~g~KVlLSi 104 (238)
+..|.|..+...++++..... -.+||++||+......+.| ...+.. .........+.|+.+|+ +++||||||
T Consensus 2 ~~~y~~~~~~~~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~lK~~~p~lKvllSi 77 (253)
T cd06544 2 FREYIGADFNGVTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNP----YWDTENLTPEAVKSIKAQHPNVKVVISI 77 (253)
T ss_pred chhhhccCCCCccccccCCCCCeeEEEEEEeeeecccccCCCCCcccc----ccCccccCHHHHHHHHHhCCCcEEEEEe
Confidence 356888766555677765444 2588999999543211011 112211 11123345566666654 678999999
Q ss_pred cCCCCc--ccCCCHHHHHHH----HHHHHHhhcCCCCCcccccccccceeeeecCCCC--chhHHHHHHHHHhhcCCCce
Q 044801 105 GGASGS--YSLSSADDARQV----AQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT--NQHWDELARALSNFSQQKKV 176 (238)
Q Consensus 105 GG~~~~--~~~~s~~~~~~f----a~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~--~~~~~~li~~LR~~~~~~~~ 176 (238)
|||+.+ ....++..++.| ++++. +.+++|+|||||||||+|. ..+|..|+++||+.+..++
T Consensus 78 GG~~~~~~~~~~~~~~~~~~~~~fv~S~~----------~~l~~~~fDGiDiDwE~~~~d~~~f~~ll~~l~~~l~~~~- 146 (253)
T cd06544 78 GGRGVQNNPTPFDPSNVDSWVSNAVSSLT----------SIIQTYNLDGIDIDYEHFPADPDTFVECIGQLITELKNNG- 146 (253)
T ss_pred CCCCCCCCccccCchhhhhHHHHHHHHHH----------HHHHHhCCCceeeecccCCcCHHHHHHHHHHHHHHhhhcC-
Confidence 999853 233444445444 55554 5679999999999999984 5789999999999884334
Q ss_pred EEEecCCCCCCCc---chhhhhc--cCcccEEEeeecCCCCCcCCCCCcchHHHHHHhhhccCCC
Q 044801 177 YLAAAPQCPYPDA---WLGGALG--TGLFDYVWVQFYNNPPCQYSGNADNLKNSWNQWTSNLSGS 236 (238)
Q Consensus 177 liTaAP~~~~~d~---~~~~~~~--~~~~D~i~vqfYnn~~c~~~~~~~~~~~~w~~w~~~~~~~ 236 (238)
+||+||.+|..+. ++-..+. .+.+|++++||||+++|. +...+.+.|++|++..|++
T Consensus 147 ~lt~a~vap~~~~~~~~y~~~~~~~~d~id~~~~qfy~~~~~~---~~~~~~~~~~~~~~~~p~~ 208 (253)
T cd06544 147 VIKVASIAPSEDAEQSHYLALYNAYGDYIDYVNYQFYNYGVPT---TVAKYVEFYDEVANNYPGK 208 (253)
T ss_pred CeEEEEecCCccccccccHHHHHHhhCceeEEEhhhhCCCCCC---CHHHHHHHHHHHHhCCCcc
Confidence 7888877775433 2211111 588999999999999886 3345568899998877653
No 8
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=99.90 E-value=2.2e-23 Score=176.95 Aligned_cols=180 Identities=19% Similarity=0.186 Sum_probs=131.1
Q ss_pred eEEEeCCCCCCcc-ccccccCCCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHhC--CCeEEEEec
Q 044801 29 ISVYWGQNGNEGS-LADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQ--GIKVLLSIG 105 (238)
Q Consensus 29 v~~Ywg~~~~~~~-L~~~c~~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~--g~KVlLSiG 105 (238)
+++||.+|..... .+..+..+.+|||+++|+...++++... +....+......|+.++++ |+||++|||
T Consensus 1 vv~y~~~w~~~~~~~~~~~~~~~~thvi~~f~~v~~~~~~~~--------~~~~~~~~~~~~i~~l~~~~~g~kv~~sig 72 (210)
T cd00598 1 VICYYDGWSSGRGPDPTDIPLSLCTHIIYAFAEISSDGSLNL--------FGDKSEEPLKGALEELASKKPGLKVLISIG 72 (210)
T ss_pred CEEEEccccccCCCChhhCCcccCCEEEEeeEEECCCCCEec--------ccCcccHHHHHHHHHHHHhCCCCEEEEEEc
Confidence 5799998864322 2456667889999999999876654211 0111345677888888876 999999999
Q ss_pred CCCCccc---CCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCCc------hhHHHHHHHHHhhcCCCce
Q 044801 106 GASGSYS---LSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGTN------QHWDELARALSNFSQQKKV 176 (238)
Q Consensus 106 G~~~~~~---~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~~------~~~~~li~~LR~~~~~~~~ 176 (238)
|+..... +.+++.|++|++++.+ .+.+|+|||||||||++.. .+|..|+++||+.++..++
T Consensus 73 g~~~~~~~~~~~~~~~~~~f~~~~~~----------~v~~~~~DGidiD~E~~~~~~~~~~~~~~~ll~~lr~~l~~~~~ 142 (210)
T cd00598 73 GWTDSSPFTLASDPASRAAFANSLVS----------FLKTYGFDGVDIDWEYPGAADNSDRENFITLLRELRSALGAANY 142 (210)
T ss_pred CCCCCCCchhhcCHHHHHHHHHHHHH----------HHHHcCCCceEEeeeCCCCcCccHHHHHHHHHHHHHHHhcccCc
Confidence 9986543 5778899999999876 4589999999999999742 6799999999999855589
Q ss_pred EEEecCCCCCCCcc--hh-hhhccCcccEEEeeecCCCCCcCC-CCCcchHHHHHHhhhc
Q 044801 177 YLAAAPQCPYPDAW--LG-GALGTGLFDYVWVQFYNNPPCQYS-GNADNLKNSWNQWTSN 232 (238)
Q Consensus 177 liTaAP~~~~~d~~--~~-~~~~~~~~D~i~vqfYnn~~c~~~-~~~~~~~~~w~~w~~~ 232 (238)
+||+||+++..... ++ ..+ ...+|+++||.|| .. |-.......+-+|+++
T Consensus 143 ~ls~a~~~~~~~~~~~~~~~~l-~~~vD~v~vm~Yd-----l~~g~~~~s~~~k~~~~~~ 196 (210)
T cd00598 143 LLTIAVPASYFDLGYAYDVPAI-GDYVDFVNVMTYD-----LVLGVPFYSLGAKAKYAKQ 196 (210)
T ss_pred EEEEEecCChHHhhccCCHHHH-HhhCCEEEEeeec-----ccccchhhhHHHHHHHHHH
Confidence 99999887543221 11 222 5889999999999 32 3322223556666664
No 9
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=99.90 E-value=2.7e-23 Score=193.53 Aligned_cols=178 Identities=17% Similarity=0.157 Sum_probs=121.3
Q ss_pred CCCcceEEEeCCCCCCcc---ccccccCCCccEEEEceeeccCCCCC--cccccCCCC-----------CCCCCCccchH
Q 044801 24 TSAGVISVYWGQNGNEGS---LADACSSGNYGIVNIAFLTTFGNSQT--PQINLAGHC-----------DPTNNGCAGLS 87 (238)
Q Consensus 24 ~~~~~v~~Ywg~~~~~~~---L~~~c~~~~~dvV~laF~~~~~~g~~--p~~nl~~~~-----------~~~~~~~~~l~ 87 (238)
....+|++|+.+|+.-.+ ++.-....+++||++||+...++|.. -..++...| +|....-...-
T Consensus 35 d~~~rvvgYY~sWs~~d~~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~G~~ 114 (441)
T COG3325 35 DDQFKVVGYYTSWSQYDRQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKGHF 114 (441)
T ss_pred CCCceEEEEecccccCCCcccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccccchH
Confidence 445899999999975333 33333457899999999997665531 112222222 12211122233
Q ss_pred HHHHHHHh--CCCeEEEEecCCCCcccC----CCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC-----
Q 044801 88 NEIKTCQG--QGIKVLLSIGGASGSYSL----SSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT----- 156 (238)
Q Consensus 88 ~~I~~~q~--~g~KVlLSiGG~~~~~~~----~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~----- 156 (238)
..+..+|+ +.+|+++|||||+-+-.| .+.+.|++||++.. +++++|+|||||||||||.
T Consensus 115 ~~L~~lk~~~~d~k~l~SIGGWs~S~~F~~~aad~a~re~Fa~saV----------e~~r~~~FDGVDIDWEYP~~~~~~ 184 (441)
T COG3325 115 GALFDLKATYPDLKTLISIGGWSDSGGFSDMAADDASRENFAKSAV----------EFMRTYGFDGVDIDWEYPGSGGDA 184 (441)
T ss_pred HHHHHHhhhCCCceEEEeecccccCCCcchhhcCHHHHHHHHHHHH----------HHHHhcCCCceeeccccCCCCCCC
Confidence 45555554 556999999999866555 45579999999765 5679999999999999984
Q ss_pred --------chhHHHHHHHHHhhc------CCCceEEEecCCC-CCCCcchhhhhccCcccEEEeeecCCC
Q 044801 157 --------NQHWDELARALSNFS------QQKKVYLAAAPQC-PYPDAWLGGALGTGLFDYVWVQFYNNP 211 (238)
Q Consensus 157 --------~~~~~~li~~LR~~~------~~~~~liTaAP~~-~~~d~~~~~~~~~~~~D~i~vqfYnn~ 211 (238)
.++|+.|+++||+.+ .+++|.||.|-.. +..-..+........+|+||||.||=.
T Consensus 185 ~~~~~~~d~~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA~~as~~~l~~~~~~~~~~~vDyiNiMTYDf~ 254 (441)
T COG3325 185 GNCGRPKDKANYVLLLQELRKKLDKAGVEDGRHYQLTIAAPASKDKLEGLNHAEIAQYVDYINIMTYDFH 254 (441)
T ss_pred CCCCCcccHHHHHHHHHHHHHHHhhcccccCceEEEEEecCCchhhhhcccHHHHHHHHhhhheeeeecc
Confidence 268999999999977 5678999998444 332222332223588999999999855
No 10
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.88 E-value=3e-22 Score=176.46 Aligned_cols=160 Identities=22% Similarity=0.223 Sum_probs=116.0
Q ss_pred ceEEEeCCCCCC-----ccccccccCCCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEE
Q 044801 28 VISVYWGQNGNE-----GSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLL 102 (238)
Q Consensus 28 ~v~~Ywg~~~~~-----~~L~~~c~~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlL 102 (238)
...|||++|.+. .+|+. .++.+|+|+|.+..+..++... ......+..++|+.+|++|+|||+
T Consensus 2 ~~~~y~~~~~~~~~~~~~~l~~--~pds~D~v~lf~~~~~~~~~~~----------~~~~~~~~~~~i~~l~~kG~KVl~ 69 (255)
T cd06542 2 ISFGYFEVWDDKGASLQESLLN--LPDSVDMVSLFAANINLDAATA----------VQFLLTNKETYIRPLQAKGTKVLL 69 (255)
T ss_pred eEEEEEEecCCcCccccccccc--CCCcceEEEEcccccCcccccc----------hhhhhHHHHHHHHHHhhCCCEEEE
Confidence 457899988642 34444 5688999999333332221110 011346688999999999999999
Q ss_pred EecCCCCccc---CCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCCc----------hhHHHHHHHHHh
Q 044801 103 SIGGASGSYS---LSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGTN----------QHWDELARALSN 169 (238)
Q Consensus 103 SiGG~~~~~~---~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~~----------~~~~~li~~LR~ 169 (238)
||||+..... ..+++.+++||++|+++ +.+|+|||||||||++.. .+|..|+++||+
T Consensus 70 sigg~~~~~~~~~~~~~~~~~~fa~~l~~~----------v~~yglDGiDiD~E~~~~~~~~~~~~~~~~~~~lv~~Lr~ 139 (255)
T cd06542 70 SILGNHLGAGFANNLSDAAAKAYAKAIVDT----------VDKYGLDGVDFDDEYSGYGKNGTSQPSNEAFVRLIKELRK 139 (255)
T ss_pred EECCCCCCCCccccCCHHHHHHHHHHHHHH----------HHHhCCCceEEeeeecccCCCCCCcchHHHHHHHHHHHHH
Confidence 9999975433 46778899999999874 489999999999998742 579999999999
Q ss_pred hcCCCceEEEecCCCCCCCcchhhhhccCcccEEEeeecCCC
Q 044801 170 FSQQKKVYLAAAPQCPYPDAWLGGALGTGLFDYVWVQFYNNP 211 (238)
Q Consensus 170 ~~~~~~~liTaAP~~~~~d~~~~~~~~~~~~D~i~vqfYnn~ 211 (238)
.++.++++||.++....... ....+ ...+||+++|+|+.+
T Consensus 140 ~~~~~~kllt~~~~~~~~~~-~~~~~-~~~vDyv~~~~y~~~ 179 (255)
T cd06542 140 YMGPTDKLLTIDGYGQALSN-DGEEV-SPYVDYVIYQYYGSS 179 (255)
T ss_pred HhCcCCcEEEEEecCCchhc-CHHHH-HHhCCEEEeeccCCC
Confidence 98434789999865432211 11111 478999999999987
No 11
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=99.87 E-value=1.9e-21 Score=176.13 Aligned_cols=163 Identities=19% Similarity=0.204 Sum_probs=112.1
Q ss_pred ceEEEeCCCCCCccccccccCCCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHH--HhCCCeEEEEec
Q 044801 28 VISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTC--QGQGIKVLLSIG 105 (238)
Q Consensus 28 ~v~~Ywg~~~~~~~L~~~c~~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~--q~~g~KVlLSiG 105 (238)
.+++||.+|.. .--.+..+.+.++||++||+...+++.. +.+... ....+...++.+ +++++|||||||
T Consensus 4 ~~~~Y~~~w~~-~~~~~~i~~~~~THi~yaf~~~~~~~~~--~~~~~~------~~~~~~~~~~~~k~~~~~lkvlisiG 74 (299)
T cd02879 4 VKGGYWPAWSE-EFPPSNIDSSLFTHLFYAFADLDPSTYE--VVISPS------DESEFSTFTETVKRKNPSVKTLLSIG 74 (299)
T ss_pred EEEEEECCCCC-CCChhHCCcccCCEEEEEEEEecCCCCE--Eeeccc------cHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 56899999862 2222333567899999999998665421 111110 112233333333 467899999999
Q ss_pred CCCCc-cc----CCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC----chhHHHHHHHHHhhcC----
Q 044801 106 GASGS-YS----LSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT----NQHWDELARALSNFSQ---- 172 (238)
Q Consensus 106 G~~~~-~~----~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~----~~~~~~li~~LR~~~~---- 172 (238)
||+.. .. +.+++.|++|++++.+ .+.+|+|||||||||+|. ..+|+.|+++||+.+.
T Consensus 75 G~~~~s~~fs~~~~~~~~R~~fi~siv~----------~l~~~~fDGidiDWE~P~~~~d~~n~~~ll~elr~~l~~~~~ 144 (299)
T cd02879 75 GGGSDSSAFAAMASDPTARKAFINSSIK----------VARKYGFDGLDLDWEFPSSQVEMENFGKLLEEWRAAVKDEAR 144 (299)
T ss_pred CCCCCCchhhHHhCCHHHHHHHHHHHHH----------HHHHhCCCceeecccCCCChhHHHHHHHHHHHHHHHHHHHhh
Confidence 99852 22 3677899999999876 468999999999999985 3689999999999872
Q ss_pred ---CCceEEEecCCC-CCC-----Ccchh-hhhccCcccEEEeeecCC
Q 044801 173 ---QKKVYLAAAPQC-PYP-----DAWLG-GALGTGLFDYVWVQFYNN 210 (238)
Q Consensus 173 ---~~~~liTaAP~~-~~~-----d~~~~-~~~~~~~~D~i~vqfYnn 210 (238)
.++++||+|+.. +.. ...++ ..+ ...+|+|+||.||-
T Consensus 145 ~~~~~~~~ls~av~~~~~~~~~~~~~~yd~~~l-~~~vD~i~vMtYD~ 191 (299)
T cd02879 145 SSGRPPLLLTAAVYFSPILFLSDDSVSYPIEAI-NKNLDWVNVMAYDY 191 (299)
T ss_pred ccCCCcEEEEeecccchhhccccccccCCHHHH-HhhCCEEEEEeecc
Confidence 257999999643 211 11121 122 57899999999994
No 12
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=99.86 E-value=4.8e-22 Score=179.86 Aligned_cols=173 Identities=21% Similarity=0.192 Sum_probs=115.4
Q ss_pred ceEEEeCCCCC--Ccc-ccccccCCCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEe
Q 044801 28 VISVYWGQNGN--EGS-LADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 28 ~v~~Ywg~~~~--~~~-L~~~c~~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
+|++||++|.. +++ ..+.+..+.+|||+++|+....++..+..+....+......+......|+ +|++|+||||||
T Consensus 2 ~vv~Y~~~~~~~~~~~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~kvllsi 80 (343)
T PF00704_consen 2 RVVGYYSNWNSYRPGSYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNLKELK-AKNPGVKVLLSI 80 (343)
T ss_dssp EEEEEEEGGGGSSTGCSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHHHHHH-HHHTT-EEEEEE
T ss_pred EEEEEECCcCCCCCCCCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHHHHHH-hhccCceEEEEe
Confidence 68999998842 231 12333458899999999998877653211001111111112233445555 678899999999
Q ss_pred cCCCCcc-c----CCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC-------chhHHHHHHHHHhhcC
Q 044801 105 GGASGSY-S----LSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT-------NQHWDELARALSNFSQ 172 (238)
Q Consensus 105 GG~~~~~-~----~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~-------~~~~~~li~~LR~~~~ 172 (238)
||+..+. . ..+++.|++|+++|.+ .+++|+|||||||||++. ..+|..|+++||+.+.
T Consensus 81 gg~~~~~~~~~~~~~~~~~r~~f~~~i~~----------~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~~l~ 150 (343)
T PF00704_consen 81 GGWGMSSDGFSQLLSNPAKRQNFINNIVS----------FLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRKALK 150 (343)
T ss_dssp EETTSSHHHHHHHHHSHHHHHHHHHHHHH----------HHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccHHHHHHHHHhhhh----------hhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhhhhc
Confidence 9996443 2 2467889999999876 569999999999999984 3689999999998772
Q ss_pred C-----CceEEEec-CCCCCCCcchhhhhccCcccEEEeeecCCC
Q 044801 173 Q-----KKVYLAAA-PQCPYPDAWLGGALGTGLFDYVWVQFYNNP 211 (238)
Q Consensus 173 ~-----~~~liTaA-P~~~~~d~~~~~~~~~~~~D~i~vqfYnn~ 211 (238)
. ++++||+| |..+.....++..-....+|+|++|.||-.
T Consensus 151 ~~~~~~~~~~ls~a~p~~~~~~~~~~~~~l~~~vD~v~~m~yD~~ 195 (343)
T PF00704_consen 151 RANRSGKGYILSVAVPPSPDYYDKYDYKELAQYVDYVNLMTYDYH 195 (343)
T ss_dssp HHHHHHSTSEEEEEEECSHHHHTTHHHHHHHTTSSEEEEETTSSS
T ss_pred ccccccceeEEeeccccccccccccccccccccccccccccccCC
Confidence 2 37999999 665532222221111577999999998665
No 13
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=99.84 E-value=1.7e-20 Score=171.16 Aligned_cols=172 Identities=18% Similarity=0.198 Sum_probs=112.7
Q ss_pred eEEEeCCCCCC--ccccc-cccCCCccEEEEceeeccCCCCCccccc-------CCCCCC---CCCCccchHHHHHHHH-
Q 044801 29 ISVYWGQNGNE--GSLAD-ACSSGNYGIVNIAFLTTFGNSQTPQINL-------AGHCDP---TNNGCAGLSNEIKTCQ- 94 (238)
Q Consensus 29 v~~Ywg~~~~~--~~L~~-~c~~~~~dvV~laF~~~~~~g~~p~~nl-------~~~~~~---~~~~~~~l~~~I~~~q- 94 (238)
|++||..|... ..... .-+...++||++||+...++|.....+- ...+.. ...........++.++
T Consensus 1 v~~Y~~~W~~~~~~~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~ 80 (322)
T cd06548 1 VVGYFTNWGIYGRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLRKLKQ 80 (322)
T ss_pred CEEEeCCCcccCCCCCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHHHHHH
Confidence 57999988532 11111 1245679999999999877664321110 000000 0112223334455554
Q ss_pred -hCCCeEEEEecCCCCcccC----CCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCCc------------
Q 044801 95 -GQGIKVLLSIGGASGSYSL----SSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGTN------------ 157 (238)
Q Consensus 95 -~~g~KVlLSiGG~~~~~~~----~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~~------------ 157 (238)
++++|||||||||+.+..| .+++.|++|++++.+ .+.+++|||||||||+|..
T Consensus 81 ~~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~Fi~siv~----------~l~~~~fDGidiDwE~p~~~~~~~~~~~~~d 150 (322)
T cd06548 81 KNPHLKILLSIGGWTWSGGFSDAAATEASRAKFADSAVD----------FIRKYGFDGIDIDWEYPGSGGAPGNVARPED 150 (322)
T ss_pred hCCCCEEEEEEeCCCCCCCchhHhCCHHHHHHHHHHHHH----------HHHhcCCCeEEECCcCCCCCCCCCCCCChhH
Confidence 4678999999999865333 577889999999875 5689999999999999742
Q ss_pred -hhHHHHHHHHHhhcC------CCceEEEecCCCCC--CCcchhhhhccCcccEEEeeecCCC
Q 044801 158 -QHWDELARALSNFSQ------QKKVYLAAAPQCPY--PDAWLGGALGTGLFDYVWVQFYNNP 211 (238)
Q Consensus 158 -~~~~~li~~LR~~~~------~~~~liTaAP~~~~--~d~~~~~~~~~~~~D~i~vqfYnn~ 211 (238)
.+|+.|+++||+.+. +++++||+|+.+.. .+.+.-..+ ...+|+|+||.||-.
T Consensus 151 ~~~~~~ll~~Lr~~l~~~~~~~~~~~~Ls~av~~~~~~~~~~~~~~l-~~~vD~vnlMtYD~~ 212 (322)
T cd06548 151 KENFTLLLKELREALDALGAETGRKYLLTIAAPAGPDKLDKLEVAEI-AKYLDFINLMTYDFH 212 (322)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCceEEEEEccCCHHHHhcCCHHHH-hhcCCEEEEEEeecc
Confidence 689999999999872 35699999965521 111111112 588999999999943
No 14
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=99.84 E-value=1.3e-20 Score=173.77 Aligned_cols=159 Identities=18% Similarity=0.230 Sum_probs=107.8
Q ss_pred ceEEEeCCCCCC---ccc-cccccCCCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEE
Q 044801 28 VISVYWGQNGNE---GSL-ADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLS 103 (238)
Q Consensus 28 ~v~~Ywg~~~~~---~~L-~~~c~~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLS 103 (238)
++++||.+|... ..+ .+..+...+|||++||+...++|.+ .... ....+. .++.+ +++|||||
T Consensus 1 ~~v~Y~~~w~~~r~~~~~~~~~i~~~~~THi~yaf~~~~~~g~l---~~~~-------~~~~~~-~~~~~--k~lkvlls 67 (345)
T cd02878 1 KNIAYFEAYNLDRPCLNMDVTQIDTSKYTHIHFAFANITSDFSV---DVSS-------VQEQFS-DFKKL--KGVKKILS 67 (345)
T ss_pred CEEEEEChhhcCCCCCCCCHhHCCcccCCEEEEEeEeecCCCeE---eecc-------cHHHHH-HHHhh--cCcEEEEE
Confidence 468999988431 111 1222467899999999998776642 2111 011222 23332 45999999
Q ss_pred ecCCCCccc------C---CCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC--------------chhH
Q 044801 104 IGGASGSYS------L---SSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT--------------NQHW 160 (238)
Q Consensus 104 iGG~~~~~~------~---~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~--------------~~~~ 160 (238)
||||+.+.. | .+++.|++|++++.+ .+.+|+|||||||||+|. ..+|
T Consensus 68 iGG~~~s~~~~~~~~f~~~~~~~~R~~Fi~si~~----------~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~d~~n~ 137 (345)
T cd02878 68 FGGWDFSTSPSTYQIFRDAVKPANRDTFANNVVN----------FVNKYNLDGVDFDWEYPGAPDIPGIPAGDPDDGKNY 137 (345)
T ss_pred EeCCCCCCCCccchhhHhhcCHHHHHHHHHHHHH----------HHHHcCCCceeecccCCcccCCCCCCCCChHHHHHH
Confidence 999975321 2 267889999999875 568999999999999873 3589
Q ss_pred HHHHHHHHhhcCCCceEEEecCCCC-CCCcchh-hhhccCcccEEEeeecCCC
Q 044801 161 DELARALSNFSQQKKVYLAAAPQCP-YPDAWLG-GALGTGLFDYVWVQFYNNP 211 (238)
Q Consensus 161 ~~li~~LR~~~~~~~~liTaAP~~~-~~d~~~~-~~~~~~~~D~i~vqfYnn~ 211 (238)
..|+++||+.+ +++++||+|+... .....++ ..+ ...+|+|+||.||-.
T Consensus 138 ~~ll~elr~~l-~~~~~ls~a~~~~~~~~~~yd~~~l-~~~vD~i~vMtYD~~ 188 (345)
T cd02878 138 LEFLKLLKSKL-PSGKSLSIAAPASYWYLKGFPIKDM-AKYVDYIVYMTYDLH 188 (345)
T ss_pred HHHHHHHHHHh-CcCcEEEEEcCCChhhhcCCcHHHH-HhhCcEEEEEeeccc
Confidence 99999999988 3478999985432 1111121 112 578999999999853
No 15
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.83 E-value=6.2e-20 Score=166.42 Aligned_cols=155 Identities=23% Similarity=0.295 Sum_probs=110.7
Q ss_pred ccccccccCCCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEecCCCCcccCCCHHHH
Q 044801 40 GSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSIGGASGSYSLSSADDA 119 (238)
Q Consensus 40 ~~L~~~c~~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSiGG~~~~~~~~s~~~~ 119 (238)
.+|..+|...+++||+|||+...+++. |.. ..+. + ...|..+.++|+.||++|+||+||||||.++....+..+|
T Consensus 15 ~~l~~~~~~~g~~~v~lAFi~~~~~~~-~~w--~g~~-~-~~~~~~~~~~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~ 89 (294)
T cd06543 15 PDLTTYAAATGVKAFTLAFIVASGGCK-PAW--GGSY-P-LDQGGWIKSDIAALRAAGGDVIVSFGGASGTPLATSCTSA 89 (294)
T ss_pred cCHHHHHHHcCCCEEEEEEEEcCCCCc-ccC--CCCC-C-cccchhHHHHHHHHHHcCCeEEEEecCCCCCccccCcccH
Confidence 357788888999999999998764442 321 1110 0 0137889999999999999999999999987644567789
Q ss_pred HHHHHHHHHhhcCCCCCcccccccccceeeeecCCCCc------hhHHHHHHHHHhhcCCCceEEEec----CCCCCCCc
Q 044801 120 RQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGTN------QHWDELARALSNFSQQKKVYLAAA----PQCPYPDA 189 (238)
Q Consensus 120 ~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~~------~~~~~li~~LR~~~~~~~~liTaA----P~~~~~d~ 189 (238)
++|++.+. .+++.|+|||||||||++.. +++..++++||+.++ +..||.+ |.+..++.
T Consensus 90 ~~~~~a~~----------~~i~~y~~dgiDfDiE~~~~~d~~~~~~~~~al~~Lq~~~p--~l~vs~Tlp~~p~gl~~~g 157 (294)
T cd06543 90 DQLAAAYQ----------KVIDAYGLTHLDFDIEGGALTDTAAIDRRAQALALLQKEYP--DLKISFTLPVLPTGLTPDG 157 (294)
T ss_pred HHHHHHHH----------HHHHHhCCCeEEEeccCCccccchhHHHHHHHHHHHHHHCC--CcEEEEecCCCCCCCChhH
Confidence 99999764 46799999999999999852 456677777777663 4555555 32322222
Q ss_pred --chhhhhc-cCcccEEEeeecCCC
Q 044801 190 --WLGGALG-TGLFDYVWVQFYNNP 211 (238)
Q Consensus 190 --~~~~~~~-~~~~D~i~vqfYnn~ 211 (238)
.+..+.. ...+|+||||.||-+
T Consensus 158 ~~~l~~a~~~Gv~~d~VNiMtmDyg 182 (294)
T cd06543 158 LNVLEAAAANGVDLDTVNIMTMDYG 182 (294)
T ss_pred HHHHHHHHHcCCCcceeeeeeecCC
Confidence 2333333 346999999999887
No 16
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=99.82 E-value=1e-19 Score=171.69 Aligned_cols=167 Identities=16% Similarity=0.182 Sum_probs=108.1
Q ss_pred ceEEEeCCCCC--Cc--cc-cccccC--CCccEEEEceeeccCCCC-CcccccCCCCCCCCCCccchHHHHHHHH--hCC
Q 044801 28 VISVYWGQNGN--EG--SL-ADACSS--GNYGIVNIAFLTTFGNSQ-TPQINLAGHCDPTNNGCAGLSNEIKTCQ--GQG 97 (238)
Q Consensus 28 ~v~~Ywg~~~~--~~--~L-~~~c~~--~~~dvV~laF~~~~~~g~-~p~~nl~~~~~~~~~~~~~l~~~I~~~q--~~g 97 (238)
+|++||..|.. .+ .+ ++..+. ..++||++||+...+++. +...+ ...+ .....-+.+..+| +++
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~--~~~~----~~~~~~~~~~~lk~~~p~ 74 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLN--EDLD----LDKSHYRAITSLKRKYPH 74 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecC--cccc----hhhhHHHHHHHHHhhCCC
Confidence 47899987732 11 21 121122 238999999999765432 21111 0000 0112234455554 479
Q ss_pred CeEEEEecCCCCc----------ccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC-----------
Q 044801 98 IKVLLSIGGASGS----------YSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT----------- 156 (238)
Q Consensus 98 ~KVlLSiGG~~~~----------~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~----------- 156 (238)
+|||||||||+.+ ..+.+++.|++|++++.+ .+.+|+|||||||||+|.
T Consensus 75 lKvllSiGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~----------~l~~~~fDGidiDWEyP~~~~~~~~g~~~ 144 (413)
T cd02873 75 LKVLLSVGGDRDTDEEGENEKYLLLLESSESRNAFINSAHS----------LLKTYGFDGLDLAWQFPKNKPKKVRGTFG 144 (413)
T ss_pred CeEEEeecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHH----------HHHHcCCCCeEeeeeCCCCcccccccccc
Confidence 9999999999742 123678899999999876 568999999999999873
Q ss_pred -----------------------chhHHHHHHHHHhhcCCCceEEEecCCCCC-CCcchhhhhccCcccEEEeeecCC
Q 044801 157 -----------------------NQHWDELARALSNFSQQKKVYLAAAPQCPY-PDAWLGGALGTGLFDYVWVQFYNN 210 (238)
Q Consensus 157 -----------------------~~~~~~li~~LR~~~~~~~~liTaAP~~~~-~d~~~~~~~~~~~~D~i~vqfYnn 210 (238)
.++|..|+++||+.+...+++||+|..... ...+++..-....+|+|+||.||-
T Consensus 145 ~~~~~~~~~~~g~~~~~~~~~~d~~nf~~Ll~elr~~l~~~~~~ls~av~~~~~~~~~~d~~~l~~~vD~inlMtYD~ 222 (413)
T cd02873 145 SAWHSFKKLFTGDSVVDEKAAEHKEQFTALVRELKNALRPDGLLLTLTVLPHVNSTWYFDVPAIANNVDFVNLATFDF 222 (413)
T ss_pred hhhhhhhcccccccccCCCChhHHHHHHHHHHHHHHHhcccCcEEEEEecCCchhccccCHHHHhhcCCEEEEEEecc
Confidence 257999999999988556788888732111 111222111157899999999995
No 17
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=99.81 E-value=1.2e-19 Score=167.43 Aligned_cols=166 Identities=18% Similarity=0.207 Sum_probs=113.8
Q ss_pred eEEEeCCCCCC----cc-ccccccCCCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHh--CCCeEE
Q 044801 29 ISVYWGQNGNE----GS-LADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQG--QGIKVL 101 (238)
Q Consensus 29 v~~Ywg~~~~~----~~-L~~~c~~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~--~g~KVl 101 (238)
|++||.+|..- .. ..+.-....++||+++|+....+|.....+ +.........+.+..+|+ +++|||
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g~~~~~~------~~~d~~~~~~~~~~~lk~~~p~lkvl 74 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNIIILD------EWNDIDLGLYERFNALKEKNPNLKTL 74 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCCCEEecC------chhhhhhhHHHHHHHHHhhCCCceEE
Confidence 57899987531 11 122224567899999999987766432211 110012344555666654 689999
Q ss_pred EEecCCCCc-c----cCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC--------chhHHHHHHHHH
Q 044801 102 LSIGGASGS-Y----SLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT--------NQHWDELARALS 168 (238)
Q Consensus 102 LSiGG~~~~-~----~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~--------~~~~~~li~~LR 168 (238)
+|||||+.+ . .+.+++.|++|+++|.+ .+.+|+|||||||||+|. ..+|..|+++||
T Consensus 75 isiGG~~~~~~~f~~~~~~~~~r~~fi~~iv~----------~l~~~~~DGidiDwE~p~~~~~~~~d~~~~~~ll~~lr 144 (362)
T cd02872 75 LAIGGWNFGSAKFSAMAASPENRKTFIKSAIA----------FLRKYGFDGLDLDWEYPGQRGGPPEDKENFVTLLKELR 144 (362)
T ss_pred EEEcCCCCCcchhHHHhCCHHHHHHHHHHHHH----------HHHHcCCCCeeeeeeccccCCCCHHHHHHHHHHHHHHH
Confidence 999999742 2 24677899999999876 468999999999999975 257999999999
Q ss_pred hhcCCC--ceEEEecCCCCCC--Ccchh-hhhccCcccEEEeeecCCC
Q 044801 169 NFSQQK--KVYLAAAPQCPYP--DAWLG-GALGTGLFDYVWVQFYNNP 211 (238)
Q Consensus 169 ~~~~~~--~~liTaAP~~~~~--d~~~~-~~~~~~~~D~i~vqfYnn~ 211 (238)
+.+... +++||+|+..... ...++ ..+ ...+|+|+||.||-.
T Consensus 145 ~~l~~~~~~~~ls~av~~~~~~~~~~~d~~~l-~~~vD~v~vmtYD~~ 191 (362)
T cd02872 145 EAFEPEAPRLLLTAAVSAGKETIDAAYDIPEI-SKYLDFINVMTYDFH 191 (362)
T ss_pred HHHHhhCcCeEEEEEecCChHHHhhcCCHHHH-hhhcceEEEecccCC
Confidence 988433 7999999655311 11121 122 578999999999853
No 18
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=99.79 E-value=1.5e-18 Score=158.04 Aligned_cols=164 Identities=23% Similarity=0.267 Sum_probs=113.2
Q ss_pred ceEEEeCCCCCCc---cccccccCCCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHh--CCCeEEE
Q 044801 28 VISVYWGQNGNEG---SLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQG--QGIKVLL 102 (238)
Q Consensus 28 ~v~~Ywg~~~~~~---~L~~~c~~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~--~g~KVlL 102 (238)
++++||..|...+ .+.+ -....+|||+++|+....+|.+ .+... . ........++.+++ +++|||+
T Consensus 1 ~~~~Y~~~w~~~~~~~~~~~-~~~~~~thv~~~~~~~~~~g~~---~~~~~---~--~~~~~~~~~~~l~~~~~~~kvl~ 71 (334)
T smart00636 1 RVVGYFTNWGVYGRNFPVDD-IPASKLTHIIYAFANIDPDGTV---TIGDE---W--ADIGNFGQLKALKKKNPGLKVLL 71 (334)
T ss_pred CEEEEECchhccCCCCChhH-CCcccCcEEEEeeeeeCCCCCE---eeCCc---c--hhhhhHHHHHHHHHhCCCCEEEE
Confidence 4789999885322 1222 2345689999999998776642 22211 0 00012234565654 5999999
Q ss_pred EecCCCCcc----cCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCCc-----hhHHHHHHHHHhhcC-
Q 044801 103 SIGGASGSY----SLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGTN-----QHWDELARALSNFSQ- 172 (238)
Q Consensus 103 SiGG~~~~~----~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~~-----~~~~~li~~LR~~~~- 172 (238)
||||++.+. -+.+++.|++|+++|.+ .+.+|+|||||||||++.. .+|..|+++||+.+.
T Consensus 72 svgg~~~s~~f~~~~~~~~~r~~fi~~i~~----------~~~~~~~DGidiDwE~~~~~~~d~~~~~~ll~~lr~~l~~ 141 (334)
T smart00636 72 SIGGWTESDNFSSMLSDPASRKKFIDSIVS----------FLKKYGFDGIDIDWEYPGARGDDRENYTALLKELREALDK 141 (334)
T ss_pred EEeCCCCCcchhHHHCCHHHHHHHHHHHHH----------HHHHcCCCeEEECCcCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 999987532 24667889999999875 5689999999999999753 479999999999883
Q ss_pred ----CCceEEEecCCCCCC--Ccchh--hhhccCcccEEEeeecCCC
Q 044801 173 ----QKKVYLAAAPQCPYP--DAWLG--GALGTGLFDYVWVQFYNNP 211 (238)
Q Consensus 173 ----~~~~liTaAP~~~~~--d~~~~--~~~~~~~~D~i~vqfYnn~ 211 (238)
+++++||+|+..... +..++ ..+ ...+|+|+||.||-.
T Consensus 142 ~~~~~~~~~lsi~v~~~~~~~~~~~~~~~~l-~~~vD~v~vm~YD~~ 187 (334)
T smart00636 142 EGAEGKGYLLTIAVPAGPDKIDKGYGDLPAI-AKYLDFINLMTYDFH 187 (334)
T ss_pred hcccCCceEEEEEecCChHHHHhhhhhHHHH-HhhCcEEEEeeeccC
Confidence 468999999765321 11112 122 578999999999854
No 19
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=99.70 E-value=8e-17 Score=146.66 Aligned_cols=165 Identities=13% Similarity=0.081 Sum_probs=106.3
Q ss_pred ceEEEeCCCCCCccccccccCCCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHH--hCCCeEE--EE
Q 044801 28 VISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQ--GQGIKVL--LS 103 (238)
Q Consensus 28 ~v~~Ywg~~~~~~~L~~~c~~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q--~~g~KVl--LS 103 (238)
.+++||..|...+..+..-....+|||+++|+...++|+.- ...+. . .. -...++.+| ++++||| ++
T Consensus 4 ~~~~y~~~W~~~~~~~~~~~~~~lthv~~~f~~i~~~g~~~--~~~~~---~---~~-~~~~~~~lk~~~~~lkvlp~i~ 74 (318)
T cd02876 4 PVLGYVTPWNSHGYDVAKKFAAKFTHVSPVWLQIKRKGNKF--VIEGT---H---DI-DKGWIEEVRKANKNIKILPRVL 74 (318)
T ss_pred ceEEEEcCcCccchHHHHHHhccCCEecceEEEEecCCCee--eeecC---c---ch-hhHHHHHHHhhCCCcEEEeEEE
Confidence 47899998854322111123467999999999987655421 11110 0 00 012233443 3689999 77
Q ss_pred ecCCCCc---ccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeee-cCCCCc-------hhHHHHHHHHHhhcC
Q 044801 104 IGGASGS---YSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFD-IEGGTN-------QHWDELARALSNFSQ 172 (238)
Q Consensus 104 iGG~~~~---~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD-~E~~~~-------~~~~~li~~LR~~~~ 172 (238)
+|||+.+ .-+.+++.|++|++++.+ .+++|+||||||| ||+|.. .+|..|+++||+.+.
T Consensus 75 ~gg~~~~~f~~~~~~~~~R~~fi~s~~~----------~~~~~~~DGidiD~we~p~~~~~~~d~~~~~~~l~el~~~l~ 144 (318)
T cd02876 75 FEGWSYQDLQSLLNDEQEREKLIKLLVT----------TAKKNHFDGIVLEVWSQLAAYGVPDKRKELIQLVIHLGETLH 144 (318)
T ss_pred ECCCCHHHHHHHHcCHHHHHHHHHHHHH----------HHHHcCCCcEEEechhhhcccCCHHHHHHHHHHHHHHHHHHh
Confidence 8999753 235788899999999875 5699999999999 999842 689999999999884
Q ss_pred CCceEEEe--cCCCCC--CCcch---hhhhccCcccEEEeeecCCC
Q 044801 173 QKKVYLAA--APQCPY--PDAWL---GGALGTGLFDYVWVQFYNNP 211 (238)
Q Consensus 173 ~~~~liTa--AP~~~~--~d~~~---~~~~~~~~~D~i~vqfYnn~ 211 (238)
.+++.+|+ +|.... +...+ +..-....+|+|+||.||-.
T Consensus 145 ~~~~~l~~~v~~~~~~~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~ 190 (318)
T cd02876 145 SANLKLILVIPPPREKGNQNGLFTRKDFEKLAPHVDGFSLMTYDYS 190 (318)
T ss_pred hcCCEEEEEEcCccccccccccccccCHHHHHhhccEEEEEeeccC
Confidence 34444444 443322 11111 11111578999999999954
No 20
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=99.69 E-value=3e-16 Score=142.25 Aligned_cols=158 Identities=17% Similarity=0.225 Sum_probs=112.3
Q ss_pred cceEEEeCCCCCC--ccccccccCCCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEe
Q 044801 27 GVISVYWGQNGNE--GSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 27 ~~v~~Ywg~~~~~--~~L~~~c~~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
..+.+|+-.|... ..+...| .++|||...++...++|. +.. ....+.++.+|++|+||++||
T Consensus 2 ~~~~g~~~~~~~~~~~~~~~~~--~~lt~v~p~w~~~~~~g~-----~~~---------~~~~~~~~~a~~~~~kv~~~i 65 (313)
T cd02874 2 IEVLGYYTPRNGSDYESLRANA--PYLTYIAPFWYGVDADGT-----LTG---------LPDERLIEAAKRRGVKPLLVI 65 (313)
T ss_pred ceEEEEEecCCCchHHHHHHhc--CCCCEEEEEEEEEcCCCC-----CCC---------CCCHHHHHHHHHCCCeEEEEE
Confidence 3578999877543 3455554 578998887766655553 111 123577888899999999999
Q ss_pred cCCCCc--------ccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC---chhHHHHHHHHHhhcCC
Q 044801 105 GGASGS--------YSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT---NQHWDELARALSNFSQQ 173 (238)
Q Consensus 105 GG~~~~--------~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~---~~~~~~li~~LR~~~~~ 173 (238)
||+.+. .-+.+++.|++|+++|.+ .+.+|+|||||||||++. ..+|..|+++||+.+..
T Consensus 66 ~~~~~~~~~~~~~~~~l~~~~~r~~fi~~iv~----------~l~~~~~DGidiDwE~~~~~d~~~~~~fl~~lr~~l~~ 135 (313)
T cd02874 66 TNLTNGNFDSELAHAVLSNPEARQRLINNILA----------LAKKYGYDGVNIDFENVPPEDREAYTQFLRELSDRLHP 135 (313)
T ss_pred ecCCCCCCCHHHHHHHhcCHHHHHHHHHHHHH----------HHHHhCCCcEEEecccCCHHHHHHHHHHHHHHHHHhhh
Confidence 998621 225778889999999875 568999999999999975 46799999999998854
Q ss_pred CceEEEec--CCCCCCC-----cchh-hhhccCcccEEEeeecCCC
Q 044801 174 KKVYLAAA--PQCPYPD-----AWLG-GALGTGLFDYVWVQFYNNP 211 (238)
Q Consensus 174 ~~~liTaA--P~~~~~d-----~~~~-~~~~~~~~D~i~vqfYnn~ 211 (238)
++++||.+ |..+... ..++ ..+ ...+|+++||.||..
T Consensus 136 ~~~~lsv~~~p~~~~~~~~~~~~~~~~~~l-~~~vD~v~lm~YD~~ 180 (313)
T cd02874 136 AGYTLSTAVVPKTSADQFGNWSGAYDYAAI-GKIVDFVVLMTYDWH 180 (313)
T ss_pred cCcEEEEEecCccccccccccccccCHHHH-HhhCCEEEEEEeccC
Confidence 56676654 4333221 1111 112 477999999999965
No 21
>KOG2806 consensus Chitinase [Carbohydrate transport and metabolism]
Probab=99.66 E-value=7.3e-16 Score=146.46 Aligned_cols=165 Identities=19% Similarity=0.161 Sum_probs=109.2
Q ss_pred cceEEEeCCCCCCccccccccCCCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHH--hCCCeEEEEe
Q 044801 27 GVISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQ--GQGIKVLLSI 104 (238)
Q Consensus 27 ~~v~~Ywg~~~~~~~L~~~c~~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q--~~g~KVlLSi 104 (238)
..+.+|+.++.....+.+. +....+|+++||+....++.. -+... . ....+.+.++.++ ++++||||||
T Consensus 58 ~~~~~~~~~~~~~~~~~~~-~~~~~TH~vfafa~~~~~~~~---~~~~~--~---~~~~f~~~~~~~k~~n~~vK~llSI 128 (432)
T KOG2806|consen 58 KSIVGYYPSRIGPETLEDQ-DPLKCTHLVYAFAKMKRVGYV---VFCGA--R---TMNRFSSYNQTAKSSNPTVKVMISI 128 (432)
T ss_pred ceeEEEeCCCCCCCCcccc-ChhhcCcceEEEeeecccccE---Eeccc--h---hhhhhHHHHHHHHhhCCCceEEEEe
Confidence 4556666554412223333 456789999999998766532 11110 0 1235666666666 4679999999
Q ss_pred cCC-CCccc----CCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCC--C---chhHHHHHHHHHhhc--C
Q 044801 105 GGA-SGSYS----LSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGG--T---NQHWDELARALSNFS--Q 172 (238)
Q Consensus 105 GG~-~~~~~----~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~--~---~~~~~~li~~LR~~~--~ 172 (238)
||| ..+.. .++++.|+.|.+++.. .+++|+|||+|||||+| . ..+|..|+++||+.+ .
T Consensus 129 GG~~~ns~~fs~~~s~~~~r~~FI~Sii~----------fl~~~~fDGvDL~We~P~~~~~d~~~~~~~i~elr~~~~~~ 198 (432)
T KOG2806|consen 129 GGSHGNSGLFSLVLSDRMIRAKFIESVVS----------FIKDYGFDGVDLAWEWPLFTPSDQLEFSRFIQELRSAFARE 198 (432)
T ss_pred cCCCCCccchhhhhcChHHHHHHHHHHHH----------HHHHcCCCceeeeeECCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 999 53433 3677899999998765 57999999999999999 3 478999999999977 2
Q ss_pred CCce-----EEEecCCCC---CCCcchh-hhhccCcccEEEeeecCCC
Q 044801 173 QKKV-----YLAAAPQCP---YPDAWLG-GALGTGLFDYVWVQFYNNP 211 (238)
Q Consensus 173 ~~~~-----liTaAP~~~---~~d~~~~-~~~~~~~~D~i~vqfYnn~ 211 (238)
.+.+ +++++...+ .-+..++ ..+ ...+||||||.||-.
T Consensus 199 ~~~~~~~~~~l~~~v~~~~~~~~~~~ydi~~i-~~~~DfiNi~syDf~ 245 (432)
T KOG2806|consen 199 TLKSPDTAKVLEAVVADSKQSAYSDGYDYENL-SKYVDFINIMSYDYY 245 (432)
T ss_pred hhccCCccceeeeccccCccchhhccCCHHHH-HhhCCeEEEeccccc
Confidence 2221 455553332 1122222 112 478999999998876
No 22
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=99.54 E-value=3.8e-14 Score=131.68 Aligned_cols=111 Identities=17% Similarity=0.216 Sum_probs=83.8
Q ss_pred HHHHHHHHhCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC------chhH
Q 044801 87 SNEIKTCQGQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT------NQHW 160 (238)
Q Consensus 87 ~~~I~~~q~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~------~~~~ 160 (238)
.+.|+.+|++|+||+++ |+.. ...+.+++.|++|++++.+ .+++|+|||||||||+|. .++|
T Consensus 67 ~~~~~~A~~~~v~v~~~-~~~~-~~~l~~~~~R~~fi~siv~----------~~~~~gfDGIdIDwE~p~~~~~~d~~~~ 134 (358)
T cd02875 67 DELLCYAHSKGVRLVLK-GDVP-LEQISNPTYRTQWIQQKVE----------LAKSQFMDGINIDIEQPITKGSPEYYAL 134 (358)
T ss_pred HHHHHHHHHcCCEEEEE-CccC-HHHcCCHHHHHHHHHHHHH----------HHHHhCCCeEEEcccCCCCCCcchHHHH
Confidence 47888999999999998 3222 2346888999999999876 468999999999999984 3689
Q ss_pred HHHHHHHHhhc--CCCceEEEecCCC-CC-CCc-chh-hhhccCcccEEEeeecCC
Q 044801 161 DELARALSNFS--QQKKVYLAAAPQC-PY-PDA-WLG-GALGTGLFDYVWVQFYNN 210 (238)
Q Consensus 161 ~~li~~LR~~~--~~~~~liTaAP~~-~~-~d~-~~~-~~~~~~~~D~i~vqfYnn 210 (238)
..|+++||+.+ .+++++||+|... |. .+. .++ ..+ ...+|+|+||.||-
T Consensus 135 t~llkelr~~l~~~~~~~~Lsvav~~~p~~~~~~~yd~~~l-~~~vD~v~lMtYD~ 189 (358)
T cd02875 135 TELVKETTKAFKKENPGYQISFDVAWSPSCIDKRCYDYTGI-ADASDFLVVMDYDE 189 (358)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEEEecCcccccccccCHHHH-HhhCCEeeEEeecc
Confidence 99999999988 3357899987543 21 111 122 122 57899999999995
No 23
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=99.44 E-value=9.6e-13 Score=119.24 Aligned_cols=157 Identities=13% Similarity=0.104 Sum_probs=104.4
Q ss_pred eEEEeCCCCCC--ccccccccCCCccEEEEceeecc-CCCCCcccccCCCCCCCCCCccchHHHHHHHHhCC--CeEEEE
Q 044801 29 ISVYWGQNGNE--GSLADACSSGNYGIVNIAFLTTF-GNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQG--IKVLLS 103 (238)
Q Consensus 29 v~~Ywg~~~~~--~~L~~~c~~~~~dvV~laF~~~~-~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g--~KVlLS 103 (238)
+.+|+-.|... .+|...+ +.+|+|.--..... .+|.+ ... ..+.....++..|+++ .+++.+
T Consensus 2 ~l~~~~~w~~~s~~sl~~~~--~~l~~vsP~W~~~~~~~g~l-----~~~------~d~~~~~~~~~~k~~~~~l~~~~~ 68 (298)
T cd06549 2 ALAFYTPWDDASFASLKRHA--PRLDWLVPEWLNLTGPEGRI-----DVF------VDPQGVAIIAAAKAHPKVLPLVQN 68 (298)
T ss_pred eeEEEecCChhhHHHHHHhh--ccCCEEeceeEEEecCCCce-----ecc------CChHHHHHHHHHHcCCceeEEEEe
Confidence 46788776432 2455554 46888777655543 33422 111 1122334456655433 477779
Q ss_pred ecCCCCc-----ccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC---chhHHHHHHHHHhhcCCCc
Q 044801 104 IGGASGS-----YSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT---NQHWDELARALSNFSQQKK 175 (238)
Q Consensus 104 iGG~~~~-----~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~---~~~~~~li~~LR~~~~~~~ 175 (238)
++|+..+ .-+.+++.|++|+++|.+ .+++|+|||||||||++. ..+|..|+++||+.+...+
T Consensus 69 ~~~~~~~~~~~~~~l~~~~~R~~fi~~iv~----------~~~~~~~dGidiD~E~~~~~d~~~~~~fl~eL~~~l~~~~ 138 (298)
T cd06549 69 ISGGAWDGKNIARLLADPSARAKFIANIAA----------YLERNQADGIVLDFEELPADDLPKYVAFLSELRRRLPAQG 138 (298)
T ss_pred cCCCCCCHHHHHHHhcCHHHHHHHHHHHHH----------HHHHhCCCCEEEecCCCChhHHHHHHHHHHHHHHHhhhcC
Confidence 8887532 246788899999999875 568999999999999975 4689999999999885556
Q ss_pred eEEEecCCCCCCCcc-hhhhhccCcccEEEeeecCCC
Q 044801 176 VYLAAAPQCPYPDAW-LGGALGTGLFDYVWVQFYNNP 211 (238)
Q Consensus 176 ~liTaAP~~~~~d~~-~~~~~~~~~~D~i~vqfYnn~ 211 (238)
+.||++.... +..+ +.. + ...+|+++||.||-.
T Consensus 139 ~~lsv~v~~~-~~~~d~~~-l-~~~~D~v~lMtYD~~ 172 (298)
T cd06549 139 KQLTVTVPAD-EADWNLKA-L-ARNADKLILMAYDEH 172 (298)
T ss_pred cEEEEEecCC-CCCCCHHH-H-HHhCCEEEEEEeccC
Confidence 7888875432 1211 222 2 478999999999964
No 24
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=97.37 E-value=0.00061 Score=64.49 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=78.3
Q ss_pred HHHHHHHHhCCCeEEEEe--cC---CCC-----cccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC
Q 044801 87 SNEIKTCQGQGIKVLLSI--GG---ASG-----SYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT 156 (238)
Q Consensus 87 ~~~I~~~q~~g~KVlLSi--GG---~~~-----~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~ 156 (238)
...++..|.+++|.++.+ ++ ++. +.-|.++...+.+.+.+.. .++.+|+.|+-||+|+-.
T Consensus 150 ~~~~~~~~~~~i~~~~~iSN~~~~~~~f~~ela~~lL~net~~~~~i~~ii~----------~l~~~Gyrgv~iDfE~v~ 219 (423)
T COG3858 150 ENVIEIAQCRKIKPVPGISNGTRPGANFGGELAQLLLNNETAKNRLINNIIT----------LLDARGYRGVNIDFENVG 219 (423)
T ss_pred cchhhhhhhcccceeEEEecCCccccccchHHHHHHHhcHHHHHHHHHHHHH----------HHHhcCcccEEechhhCC
Confidence 345666677788776665 44 111 2234667777777777764 457899999999999865
Q ss_pred ---chhHHHHHHHHHhhcCCCceEEEecCCCCCCC----cch---hhhhccCcccEEEeeecCCC
Q 044801 157 ---NQHWDELARALSNFSQQKKVYLAAAPQCPYPD----AWL---GGALGTGLFDYVWVQFYNNP 211 (238)
Q Consensus 157 ---~~~~~~li~~LR~~~~~~~~liTaAP~~~~~d----~~~---~~~~~~~~~D~i~vqfYnn~ 211 (238)
.+-|..|++++|+.+.+.++.+|.|...-..+ +.. +-.-.+...|+|.+|.|+..
T Consensus 220 ~~DR~~yt~flR~~r~~l~~~G~~~siAvaakt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h 284 (423)
T COG3858 220 PGDRELYTDFLRQVRDALHSGGYTVSIAVAAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWH 284 (423)
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEEEecCCCCCCcCccccchhhhhhhceeeeEEEEEEeccC
Confidence 35788999999998866778877775432212 111 11112677899999999987
No 25
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.13 E-value=0.0048 Score=56.61 Aligned_cols=119 Identities=16% Similarity=0.178 Sum_probs=74.2
Q ss_pred ccchHHHHHHHHhCCCeEEEEe----cCCCCc-c------c--------------------C--CCHHHHHHHHHHHHHh
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSI----GGASGS-Y------S--------------------L--SSADDARQVAQYLWDN 129 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSi----GG~~~~-~------~--------------------~--~s~~~~~~fa~~l~~~ 129 (238)
-..|+..|+.||++|.+|---+ .+...+ . . + +...+.++|...+.
T Consensus 69 ~DpL~~~I~eaHkrGlevHAW~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v-- 146 (311)
T PF02638_consen 69 FDPLEFMIEEAHKRGLEVHAWFRVGFNAPDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIV-- 146 (311)
T ss_pred ccHHHHHHHHHHHcCCEEEEEEEeecCCCchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHH--
Confidence 4569999999999999998665 111000 0 0 0 11123444444332
Q ss_pred hcCCCCCcccccccccceeeee-cCCCC----------------------------------chhHHHHHHHHHhhc--C
Q 044801 130 FLGGQSSSRPLGDAVLDGIDFD-IEGGT----------------------------------NQHWDELARALSNFS--Q 172 (238)
Q Consensus 130 f~~g~s~~r~~~~~~lDGiDiD-~E~~~----------------------------------~~~~~~li~~LR~~~--~ 172 (238)
...+++|.+|||-|| +=++. ..+...|+++|++.. .
T Consensus 147 -------~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~d~~W~~WRr~~I~~~V~~i~~~ik~~ 219 (311)
T PF02638_consen 147 -------KEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPEDDAWTQWRRDNINNFVKRIYDAIKAI 219 (311)
T ss_pred -------HHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999 33421 023457777777654 3
Q ss_pred CCceEEEecCCCCCCCc---chhh---hhccCcccEEEeeecCC
Q 044801 173 QKKVYLAAAPQCPYPDA---WLGG---ALGTGLFDYVWVQFYNN 210 (238)
Q Consensus 173 ~~~~liTaAP~~~~~d~---~~~~---~~~~~~~D~i~vqfYnn 210 (238)
.+...++++|...+..+ .+.+ -+..+.+|+|.+|.|..
T Consensus 220 kP~v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~ 263 (311)
T PF02638_consen 220 KPWVKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWS 263 (311)
T ss_pred CCCCeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeeccc
Confidence 46788999998655222 1221 13479999999999977
No 26
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=96.60 E-value=0.0034 Score=58.39 Aligned_cols=74 Identities=20% Similarity=0.104 Sum_probs=55.3
Q ss_pred HHHHHHHhCCCeEEEEec--CCCC----cccCCC-HHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC----
Q 044801 88 NEIKTCQGQGIKVLLSIG--GASG----SYSLSS-ADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT---- 156 (238)
Q Consensus 88 ~~I~~~q~~g~KVlLSiG--G~~~----~~~~~s-~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~---- 156 (238)
.-|..+|++|+|||-.|- ..++ ..-+.+ ++.+..+|+.|.+ +.+.|||||+-||+|...
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~----------lak~yGfDGw~iN~E~~~~~~~ 119 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVE----------VAKYYGFDGWLINIETELGDAE 119 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHH----------HHHHhCCCceEeeeeccCCcHH
Confidence 567789999999998773 1111 112445 6677888888876 448899999999999854
Q ss_pred -chhHHHHHHHHHhhc
Q 044801 157 -NQHWDELARALSNFS 171 (238)
Q Consensus 157 -~~~~~~li~~LR~~~ 171 (238)
...+..|+++||+.+
T Consensus 120 ~~~~l~~F~~~L~~~~ 135 (339)
T cd06547 120 KAKRLIAFLRYLKAKL 135 (339)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 367888999998876
No 27
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=95.22 E-value=0.012 Score=54.06 Aligned_cols=74 Identities=22% Similarity=0.175 Sum_probs=46.1
Q ss_pred HHHHHHHhCCCeEEEEec----CCC--CcccCC-CHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC----
Q 044801 88 NEIKTCQGQGIKVLLSIG----GAS--GSYSLS-SADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT---- 156 (238)
Q Consensus 88 ~~I~~~q~~g~KVlLSiG----G~~--~~~~~~-s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~---- 156 (238)
.=|.++|.+|+|||-.|- |.. ...-+. +++....+|+.|++ +.+-|||||.-|++|.+.
T Consensus 46 ~widaAHrnGV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~----------ia~~yGFDGw~iN~E~~~~~~~ 115 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIE----------IAKYYGFDGWLINIETPLSGPE 115 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHH----------HHHHHT--EEEEEEEESSTTGG
T ss_pred hhHHHHHhcCceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHH----------HHHHcCCCceEEEecccCCchh
Confidence 467889999999986552 111 112344 55666778888775 347799999999999873
Q ss_pred -chhHHHHHHHHHhhc
Q 044801 157 -NQHWDELARALSNFS 171 (238)
Q Consensus 157 -~~~~~~li~~LR~~~ 171 (238)
...+..|+++||+..
T Consensus 116 ~~~~l~~F~~~l~~~~ 131 (311)
T PF03644_consen 116 DAENLIDFLKYLRKEA 131 (311)
T ss_dssp GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 357888888888755
No 28
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=88.95 E-value=2.3 Score=42.08 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.3
Q ss_pred CCccchHHHHHHHHhCCCeEEEEe
Q 044801 81 NGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 81 ~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
++..++++.|++||++|++|+|=+
T Consensus 157 G~~~e~k~lV~~aH~~Gi~VilD~ 180 (542)
T TIGR02402 157 GGPDDLKALVDAAHGLGLGVILDV 180 (542)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 356789999999999999999975
No 29
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=87.67 E-value=4 Score=39.47 Aligned_cols=24 Identities=29% Similarity=0.358 Sum_probs=21.7
Q ss_pred CCccchHHHHHHHHhCCCeEEEEe
Q 044801 81 NGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 81 ~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
++..+|++.|++||++|+||++=+
T Consensus 78 Gt~~dl~~Li~~~H~~Gi~vi~D~ 101 (479)
T PRK09441 78 GTKEELLNAIDALHENGIKVYADV 101 (479)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 467889999999999999999976
No 30
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=83.44 E-value=7.1 Score=39.02 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=19.2
Q ss_pred cchHHHHHHHHhCCCeEEEEe
Q 044801 84 AGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSi 104 (238)
.++++.|++||++|++|+|=+
T Consensus 229 ~efk~lV~~~H~~Gi~VilDv 249 (605)
T TIGR02104 229 RELKQMIQALHENGIRVIMDV 249 (605)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 579999999999999999965
No 31
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=83.15 E-value=7.2 Score=41.06 Aligned_cols=81 Identities=20% Similarity=0.344 Sum_probs=49.4
Q ss_pred chHHHHHHHHhCCCeEEEEe-------cCCCCc---------ccC--------C-------CHHHHHHHHHHHHHhhcCC
Q 044801 85 GLSNEIKTCQGQGIKVLLSI-------GGASGS---------YSL--------S-------SADDARQVAQYLWDNFLGG 133 (238)
Q Consensus 85 ~l~~~I~~~q~~g~KVlLSi-------GG~~~~---------~~~--------~-------s~~~~~~fa~~l~~~f~~g 133 (238)
++++.|+.||++|++|+|=+ +|.... |.. . ...+.....+.|.+
T Consensus 405 Efk~mV~alH~~Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiD----- 479 (898)
T TIGR02103 405 EFREMVQALNKTGLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVD----- 479 (898)
T ss_pred HHHHHHHHHHHCCCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHH-----
Confidence 68899999999999999965 332100 000 0 00111222233333
Q ss_pred CCCcccccccccceeeeecCC-CCchhHHHHHHHHHhhc
Q 044801 134 QSSSRPLGDAVLDGIDFDIEG-GTNQHWDELARALSNFS 171 (238)
Q Consensus 134 ~s~~r~~~~~~lDGiDiD~E~-~~~~~~~~li~~LR~~~ 171 (238)
++...+.+|++|||-||.-. -....+.++.++||+..
T Consensus 480 -sl~~W~~ey~VDGFRfDlm~~~~~~f~~~~~~~l~~i~ 517 (898)
T TIGR02103 480 -SLVVWAKDYKVDGFRFDLMGHHPKAQMLAAREAIKALT 517 (898)
T ss_pred -HHHHHHHHcCCCEEEEechhhCCHHHHHHHHHHHHHhC
Confidence 12345678999999999764 34567778888888763
No 32
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=81.94 E-value=8.3 Score=41.50 Aligned_cols=78 Identities=18% Similarity=0.305 Sum_probs=46.6
Q ss_pred cchHHHHHHHHhCCCeEEEEe-----------cCCCCcc-----------------cCC--CHHHHHHHHHHHHHhhcCC
Q 044801 84 AGLSNEIKTCQGQGIKVLLSI-----------GGASGSY-----------------SLS--SADDARQVAQYLWDNFLGG 133 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSi-----------GG~~~~~-----------------~~~--s~~~~~~fa~~l~~~f~~g 133 (238)
.+|++.|++||++|++|||=+ -+....+ .+. .+.-++-+.+++
T Consensus 555 ~EfK~LV~alH~~GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl------- 627 (1111)
T TIGR02102 555 AEFKNLINEIHKRGMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSI------- 627 (1111)
T ss_pred HHHHHHHHHHHHCCCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHH-------
Confidence 469999999999999999964 0100000 011 112223333322
Q ss_pred CCCcccccccccceeeeecCCC-CchhHHHHHHHHHhhc
Q 044801 134 QSSSRPLGDAVLDGIDFDIEGG-TNQHWDELARALSNFS 171 (238)
Q Consensus 134 ~s~~r~~~~~~lDGiDiD~E~~-~~~~~~~li~~LR~~~ 171 (238)
.-.+++|++|||-||.-.. +...+..+.+++|+.-
T Consensus 628 ---~yWv~ey~VDGFRfDl~g~~d~~~~~~~~~~l~~~d 663 (1111)
T TIGR02102 628 ---KYLVDEFKVDGFRFDMMGDHDAASIEIAYKEAKAIN 663 (1111)
T ss_pred ---HHHHHhcCCcEEEEeccccCCHHHHHHHHHHHHHhC
Confidence 3356789999999997642 3345556666676653
No 33
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=81.71 E-value=8.7 Score=39.21 Aligned_cols=22 Identities=23% Similarity=0.513 Sum_probs=19.7
Q ss_pred ccchHHHHHHHHhCCCeEEEEe
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSi 104 (238)
..++++.|++||++|++|+|=+
T Consensus 244 ~~efk~LV~~~H~~GI~VIlDv 265 (688)
T TIGR02100 244 VAEFKTMVRALHDAGIEVILDV 265 (688)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE
Confidence 4579999999999999999965
No 34
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=81.55 E-value=4.2 Score=34.81 Aligned_cols=68 Identities=22% Similarity=0.390 Sum_probs=46.6
Q ss_pred cccceeeeecCCCC--chhHHHHHHHHHhhcCCCceE--EEecCC-CCCCCcchhhhhccCcccEEEeeecCCCCCcC
Q 044801 143 AVLDGIDFDIEGGT--NQHWDELARALSNFSQQKKVY--LAAAPQ-CPYPDAWLGGALGTGLFDYVWVQFYNNPPCQY 215 (238)
Q Consensus 143 ~~lDGiDiD~E~~~--~~~~~~li~~LR~~~~~~~~l--iTaAP~-~~~~d~~~~~~~~~~~~D~i~vqfYnn~~c~~ 215 (238)
..+-||.||+..++ -..|..|+++||+.++ .++= ||+=|. |..++ .+... .+.+|-+-+|.| .|.|+.
T Consensus 41 ~~v~giQIDfDa~t~~L~~Y~~fL~~LR~~LP-~~~~LSIT~L~dW~~~~~-~L~~L--~~~VDE~VlQ~y-qGl~d~ 113 (181)
T PF11340_consen 41 NNVAGIQIDFDAATSRLPAYAQFLQQLRQRLP-PDYRLSITALPDWLSSPD-WLNAL--PGVVDELVLQVY-QGLFDP 113 (181)
T ss_pred CCceEEEEecCccccchHHHHHHHHHHHHhCC-CCceEeeEEehhhhcCch-hhhhH--hhcCCeeEEEee-cCCCCH
Confidence 46899999999886 3789999999999984 3444 554443 22222 23222 367999999999 443544
No 35
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=81.47 E-value=6.4 Score=36.04 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=42.3
Q ss_pred ccchHHHHHHHHhCCCeEEEEe----------------cC-----------------CCCcccCCCHHHHHHHHHHHHHh
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSI----------------GG-----------------ASGSYSLSSADDARQVAQYLWDN 129 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSi----------------GG-----------------~~~~~~~~s~~~~~~fa~~l~~~ 129 (238)
-++.++.|+.+|++|+||++.+ +| ..+-..|+.++.++.|.+.+.
T Consensus 65 FPdp~~mi~~L~~~G~kv~~~i~P~v~~~~~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~~~~~-- 142 (319)
T cd06591 65 FPDPKAMVRELHEMNAELMISIWPTFGPETENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYWKQLK-- 142 (319)
T ss_pred CCCHHHHHHHHHHCCCEEEEEecCCcCCCChhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHHHHHH--
Confidence 3567899999999999999977 11 111234566665566666543
Q ss_pred hcCCCCCcccccccccceeeeecCC
Q 044801 130 FLGGQSSSRPLGDAVLDGIDFDIEG 154 (238)
Q Consensus 130 f~~g~s~~r~~~~~~lDGiDiD~E~ 154 (238)
+.+.+.|+||+=+|.-.
T Consensus 143 --------~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 143 --------KNYYDKGVDAWWLDAAE 159 (319)
T ss_pred --------HHhhcCCCcEEEecCCC
Confidence 34567899999888654
No 36
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=80.49 E-value=21 Score=31.78 Aligned_cols=100 Identities=15% Similarity=0.170 Sum_probs=59.1
Q ss_pred cchHHHHHHHHh--CCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCCc----
Q 044801 84 AGLSNEIKTCQG--QGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGTN---- 157 (238)
Q Consensus 84 ~~l~~~I~~~q~--~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~~---- 157 (238)
..+.+.|+..++ .++.|++||+|. +.++..+.|+. +.++|.|+|+|++-.|..
T Consensus 83 ~~~~~~i~~~~~~~~~~pvi~si~g~-------~~~~~~~~a~~--------------~~~~G~d~ielN~~cP~~~~~~ 141 (289)
T cd02810 83 DVWLQDIAKAKKEFPGQPLIASVGGS-------SKEDYVELARK--------------IERAGAKALELNLSCPNVGGGR 141 (289)
T ss_pred HHHHHHHHHHHhccCCCeEEEEeccC-------CHHHHHHHHHH--------------HHHhCCCEEEEEcCCCCCCCCc
Confidence 455667776655 478999999995 23343444443 355799999999887642
Q ss_pred ------hhHHHHHHHHHhhcCCCceEEEecCCCCCCCcc--hhhhhccCcccEEEee
Q 044801 158 ------QHWDELARALSNFSQQKKVYLAAAPQCPYPDAW--LGGALGTGLFDYVWVQ 206 (238)
Q Consensus 158 ------~~~~~li~~LR~~~~~~~~liTaAP~~~~~d~~--~~~~~~~~~~D~i~vq 206 (238)
....++++++|+.. +....+=..|... ++.. +-..+...-.|+|.+.
T Consensus 142 ~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~-~~~~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 142 QLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFD-LEDIVELAKAAERAGADGLTAI 196 (289)
T ss_pred ccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCC-HHHHHHHHHHHHHcCCCEEEEE
Confidence 23557788888754 3334444454321 1111 1122223447888875
No 37
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=79.91 E-value=8.8 Score=34.57 Aligned_cols=66 Identities=15% Similarity=0.224 Sum_probs=41.8
Q ss_pred chHHHHHHHH-hCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccc-cceeeeecCCCC------
Q 044801 85 GLSNEIKTCQ-GQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAV-LDGIDFDIEGGT------ 156 (238)
Q Consensus 85 ~l~~~I~~~q-~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~-lDGiDiD~E~~~------ 156 (238)
...+.++..+ +.++.|++||+|.+ .+.|++.. +.+.++| +|||+|+.--|.
T Consensus 78 ~~~~~~~~~~~~~~~p~i~si~g~~----------~~~~~~~a-----------~~~~~aG~~D~iElN~~cP~~~~gg~ 136 (301)
T PRK07259 78 AFIEEELPWLEEFDTPIIANVAGST----------EEEYAEVA-----------EKLSKAPNVDAIELNISCPNVKHGGM 136 (301)
T ss_pred HHHHHHHHHHhccCCcEEEEeccCC----------HHHHHHHH-----------HHHhccCCcCEEEEECCCCCCCCCcc
Confidence 3444555443 34789999999842 34555431 2347788 999999874332
Q ss_pred -----chhHHHHHHHHHhhc
Q 044801 157 -----NQHWDELARALSNFS 171 (238)
Q Consensus 157 -----~~~~~~li~~LR~~~ 171 (238)
.....++++++|+..
T Consensus 137 ~~~~~~~~~~eiv~~vr~~~ 156 (301)
T PRK07259 137 AFGTDPELAYEVVKAVKEVV 156 (301)
T ss_pred ccccCHHHHHHHHHHHHHhc
Confidence 234567788888764
No 38
>PRK03705 glycogen debranching enzyme; Provisional
Probab=79.56 E-value=4.4 Score=41.16 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=19.0
Q ss_pred cchHHHHHHHHhCCCeEEEEe
Q 044801 84 AGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSi 104 (238)
.++++.|++||++|+||+|=+
T Consensus 242 ~efk~LV~~~H~~GI~VIlDv 262 (658)
T PRK03705 242 DEFRDAVKALHKAGIEVILDV 262 (658)
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 379999999999999999965
No 39
>PRK12313 glycogen branching enzyme; Provisional
Probab=79.28 E-value=14 Score=37.21 Aligned_cols=60 Identities=12% Similarity=0.016 Sum_probs=34.8
Q ss_pred ccccCCCccEEEEceeeccC---CCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEe
Q 044801 44 DACSSGNYGIVNIAFLTTFG---NSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 44 ~~c~~~~~dvV~laF~~~~~---~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
++...-++|+|-|.=+..++ +-++-..++-. -++.-++..++++.|++||++|+||+|=+
T Consensus 178 ~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~~y~~-i~~~~Gt~~d~k~lv~~~H~~Gi~VilD~ 240 (633)
T PRK12313 178 PYVKEMGYTHVEFMPLMEHPLDGSWGYQLTGYFA-PTSRYGTPEDFMYLVDALHQNGIGVILDW 240 (633)
T ss_pred HHHHHcCCCEEEeCchhcCCCCCCCCCCCcCcCc-CCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 44555677777765221111 11222222211 12222356789999999999999999975
No 40
>PRK05402 glycogen branching enzyme; Provisional
Probab=79.05 E-value=33 Score=35.18 Aligned_cols=60 Identities=10% Similarity=0.073 Sum_probs=35.5
Q ss_pred ccccCCCccEEEEceeeccC---CCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEe
Q 044801 44 DACSSGNYGIVNIAFLTTFG---NSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 44 ~~c~~~~~dvV~laF~~~~~---~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
++...-++|+|-|.=+..++ +=++-..++-. -++.-++..+|++.|++||++|++|||=+
T Consensus 273 ~ylk~LGv~~i~L~Pi~e~~~~~~~GY~~~~y~a-i~~~~Gt~~dfk~lV~~~H~~Gi~VilD~ 335 (726)
T PRK05402 273 PYVKEMGFTHVELLPIAEHPFDGSWGYQPTGYYA-PTSRFGTPDDFRYFVDACHQAGIGVILDW 335 (726)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCCcccCCC-cCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 44556678888775222211 11121122211 12222456789999999999999999975
No 41
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=78.74 E-value=37 Score=28.28 Aligned_cols=120 Identities=16% Similarity=0.149 Sum_probs=67.9
Q ss_pred CCCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEecCCCCcccCCCH----HHHHHHH
Q 044801 48 SGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSIGGASGSYSLSSA----DDARQVA 123 (238)
Q Consensus 48 ~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSiGG~~~~~~~~s~----~~~~~fa 123 (238)
.-++|.||+-...-.+...+|.--....|.. .....+...++.+++.|.||.++++=...-..-.+. ..++..+
T Consensus 31 ~~GidtlIlq~~~~~~~~~yps~~~~~~~~~--~~~d~l~~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~~~~v~ 108 (166)
T PF14488_consen 31 AIGIDTLILQWTGYGGFAFYPSKLSPGGFYM--PPVDLLEMILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAERNKQVA 108 (166)
T ss_pred HcCCcEEEEEEeecCCcccCCccccCccccC--CcccHHHHHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHHHHHHH
Confidence 3568888876543222122343111111211 133567788889999999999999865311110111 2345688
Q ss_pred HHHHHhhcCCCCCcccccccccceeeeecCCCC-----chhHHHHHHHHHhhcCCCceEE
Q 044801 124 QYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT-----NQHWDELARALSNFSQQKKVYL 178 (238)
Q Consensus 124 ~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~-----~~~~~~li~~LR~~~~~~~~li 178 (238)
+.||..|+. .-.|.|-=|-.|-.. ...+..|.+.|+++.+++..+|
T Consensus 109 ~el~~~yg~---------h~sf~GWYip~E~~~~~~~~~~~~~~l~~~lk~~s~~~Pv~I 159 (166)
T PF14488_consen 109 DELWQRYGH---------HPSFYGWYIPYEIDDYNWNAPERFALLGKYLKQISPGKPVMI 159 (166)
T ss_pred HHHHHHHcC---------CCCCceEEEecccCCcccchHHHHHHHHHHHHHhCCCCCeEE
Confidence 888887722 126788888888653 3445566666666654444443
No 42
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=76.93 E-value=19 Score=31.02 Aligned_cols=151 Identities=15% Similarity=0.121 Sum_probs=73.5
Q ss_pred CCCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEecC---CC-CcccCCCHHHHHHHH
Q 044801 48 SGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSIGG---AS-GSYSLSSADDARQVA 123 (238)
Q Consensus 48 ~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSiGG---~~-~~~~~~s~~~~~~fa 123 (238)
.-++++|-|-+....-....|..+... .....+.+.|+.|+++|++|+|.+=+ |. ...........+++.
T Consensus 32 ~~G~n~VRi~v~~~~~~~~~~~~~~~~------~~~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~~~~~~~~~~~~~~ 105 (281)
T PF00150_consen 32 ALGFNTVRIPVGWEAYQEPNPGYNYDE------TYLARLDRIVDAAQAYGIYVILDLHNAPGWANGGDGYGNNDTAQAWF 105 (281)
T ss_dssp HTTESEEEEEEESTSTSTTSTTTSBTH------HHHHHHHHHHHHHHHTT-EEEEEEEESTTCSSSTSTTTTHHHHHHHH
T ss_pred HCCCCEEEeCCCHHHhcCCCCCccccH------HHHHHHHHHHHHHHhCCCeEEEEeccCccccccccccccchhhHHHH
Confidence 456888888655311100011111111 13467889999999999999999966 32 222233333222332
Q ss_pred HHHHHhhcCCCCCcccccccccceeeeecCCCC---------------chhHHHHHHHHHhhcCCCceEEEecCCCCCCC
Q 044801 124 QYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT---------------NQHWDELARALSNFSQQKKVYLAAAPQCPYPD 188 (238)
Q Consensus 124 ~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~---------------~~~~~~li~~LR~~~~~~~~liTaAP~~~~~d 188 (238)
+.+|..+ ..|.-++..+-|+||=-|-.. ...+.++++++|+.-+ +-+|..-......+
T Consensus 106 ~~~~~~l-----a~~y~~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~--~~~i~~~~~~~~~~ 178 (281)
T PF00150_consen 106 KSFWRAL-----AKRYKDNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADP--NHLIIVGGGGWGAD 178 (281)
T ss_dssp HHHHHHH-----HHHHTTTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTS--SSEEEEEEHHHHTB
T ss_pred Hhhhhhh-----ccccCCCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCC--cceeecCCCccccc
Confidence 2333322 112223345667777444211 1245677777887642 23333332110011
Q ss_pred cch--hhh-hccCcccEEEeeecCCC
Q 044801 189 AWL--GGA-LGTGLFDYVWVQFYNNP 211 (238)
Q Consensus 189 ~~~--~~~-~~~~~~D~i~vqfYnn~ 211 (238)
... ... ......+.+.+.+|...
T Consensus 179 ~~~~~~~~P~~~~~~~~~~~H~Y~~~ 204 (281)
T PF00150_consen 179 PDGAAADNPNDADNNDVYSFHFYDPY 204 (281)
T ss_dssp HHHHHHHSTTTTTTSEEEEEEEETTT
T ss_pred cchhhhcCcccccCceeEEeeEeCCC
Confidence 001 000 11356789999999954
No 43
>PLN02960 alpha-amylase
Probab=75.66 E-value=39 Score=35.69 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.6
Q ss_pred CCccchHHHHHHHHhCCCeEEEEe
Q 044801 81 NGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 81 ~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
++..++++.|++||++|++|+|-+
T Consensus 463 Gtp~dfk~LVd~aH~~GI~VILDv 486 (897)
T PLN02960 463 GTPDDFKRLVDEAHGLGLLVFLDI 486 (897)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 356789999999999999999987
No 44
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=74.92 E-value=21 Score=32.83 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=19.3
Q ss_pred CccchHHHHHHHHhCCCeEEEEe
Q 044801 82 GCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 82 ~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
..+.+++....+|+.|-|+++=|
T Consensus 75 ~~~~~~~l~~~vh~~G~~~~~QL 97 (336)
T cd02932 75 QIEALKRIVDFIHSQGAKIGIQL 97 (336)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEc
Confidence 35678888889999999999887
No 45
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=74.22 E-value=14 Score=34.27 Aligned_cols=63 Identities=11% Similarity=0.137 Sum_probs=42.9
Q ss_pred cch--HHHHHHHHhCCCeEEEEe------c---------------C---------------CCCc---ccCCCHHHHHHH
Q 044801 84 AGL--SNEIKTCQGQGIKVLLSI------G---------------G---------------ASGS---YSLSSADDARQV 122 (238)
Q Consensus 84 ~~l--~~~I~~~q~~g~KVlLSi------G---------------G---------------~~~~---~~~~s~~~~~~f 122 (238)
++. ++.|+.+|++|+||++.+ . | |.|. ..|++++.++-+
T Consensus 64 Pdp~~~~mi~~L~~~G~k~~~~i~P~v~~~~~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww 143 (339)
T cd06602 64 PGLKMPEFVDELHANGQHYVPILDPAISANEPTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWW 143 (339)
T ss_pred CCccHHHHHHHHHHCCCEEEEEEeCccccCcCCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHH
Confidence 455 899999999999999998 1 0 0011 234556666666
Q ss_pred HHHHHHhhcCCCCCcccccccccceeeeecCCCC
Q 044801 123 AQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT 156 (238)
Q Consensus 123 a~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~ 156 (238)
.+.+- +.+.+.|+||+=+|.-.|.
T Consensus 144 ~~~~~----------~~~~~~Gvdg~w~D~~Ep~ 167 (339)
T cd06602 144 TDEIK----------DFHDQVPFDGLWIDMNEPS 167 (339)
T ss_pred HHHHH----------HHHhcCCCcEEEecCCCCc
Confidence 55432 3457789999999987664
No 46
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=73.93 E-value=12 Score=34.65 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=18.6
Q ss_pred HHHHHHHHhCCCeEEE--EecCCC
Q 044801 87 SNEIKTCQGQGIKVLL--SIGGAS 108 (238)
Q Consensus 87 ~~~I~~~q~~g~KVlL--SiGG~~ 108 (238)
.++|+.+|.+|+||+- |+|-+.
T Consensus 84 ~~~i~~Lk~~g~~viaYlSvGe~E 107 (315)
T TIGR01370 84 PEEIVRAAAAGRWPIAYLSIGAAE 107 (315)
T ss_pred HHHHHHHHhCCcEEEEEEEchhcc
Confidence 5789999999999985 999854
No 47
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=73.66 E-value=24 Score=35.46 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.7
Q ss_pred CccchHHHHHHHHhCCCeEEEEe
Q 044801 82 GCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 82 ~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
+..+|++.|++||++|++|||=+
T Consensus 204 t~~dlk~lV~~~H~~Gi~VilD~ 226 (613)
T TIGR01515 204 TPDDFMYFVDACHQAGIGVILDW 226 (613)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEe
Confidence 56789999999999999999975
No 48
>PRK12568 glycogen branching enzyme; Provisional
Probab=73.34 E-value=84 Score=32.56 Aligned_cols=62 Identities=18% Similarity=0.299 Sum_probs=35.9
Q ss_pred ccccccCCCccEEEEceee--ccC-CCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEe
Q 044801 42 LADACSSGNYGIVNIAFLT--TFG-NSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 42 L~~~c~~~~~dvV~laF~~--~~~-~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
|.++...-++|+|-|.=+. ++. +-++-..++-. -++.-++..+++..|++||++|++|||=+
T Consensus 275 ll~ylk~LGvt~I~LmPi~e~~~~~~wGY~~~~~~a-~~~~~G~~~dfk~lV~~~H~~Gi~VIlD~ 339 (730)
T PRK12568 275 LIPYVQQLGFTHIELLPITEHPFGGSWGYQPLGLYA-PTARHGSPDGFAQFVDACHRAGIGVILDW 339 (730)
T ss_pred HHHHHHHcCCCEEEECccccCCCCCCCCCCCCcCCc-cCcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3345556678888775222 221 11121111111 12222356789999999999999999975
No 49
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=72.94 E-value=13 Score=33.69 Aligned_cols=63 Identities=16% Similarity=0.204 Sum_probs=42.7
Q ss_pred ccchHHHHHHHHhCCCeEEEEec------------------------C--------CCC---cccCCCHHHHHHHHHHHH
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSIG------------------------G--------ASG---SYSLSSADDARQVAQYLW 127 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSiG------------------------G--------~~~---~~~~~s~~~~~~fa~~l~ 127 (238)
-++.++.|+.+|++|.|+++.+= | |.+ -..+++++.++-+.+.+
T Consensus 69 FPdp~~mi~~l~~~G~k~~l~i~P~i~~~s~~~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~- 147 (303)
T cd06592 69 FPDPKGMIDQLHDLGFRVTLWVHPFINTDSENFREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDWFLSRL- 147 (303)
T ss_pred CCCHHHHHHHHHHCCCeEEEEECCeeCCCCHHHHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHHHHHHH-
Confidence 35688999999999999999761 1 001 12345565555555543
Q ss_pred HhhcCCCCCcccccccccceeeeecCCC
Q 044801 128 DNFLGGQSSSRPLGDAVLDGIDFDIEGG 155 (238)
Q Consensus 128 ~~f~~g~s~~r~~~~~~lDGiDiD~E~~ 155 (238)
.+.+.++|+||+=+|.-.+
T Consensus 148 ---------~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 148 ---------KSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred ---------HHHHHHhCCcEEEeCCCCc
Confidence 3456789999999997664
No 50
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=72.42 E-value=13 Score=34.17 Aligned_cols=23 Identities=35% Similarity=0.531 Sum_probs=20.1
Q ss_pred CccchHHHHHHHHhCCCeEEEEe
Q 044801 82 GCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 82 ~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
.-++.++.|+.+|++|+||++.+
T Consensus 69 ~FPdp~~mi~~Lh~~G~~~~~~i 91 (317)
T cd06594 69 RYPGLDELIEELKARGIRVLTYI 91 (317)
T ss_pred hCCCHHHHHHHHHHCCCEEEEEe
Confidence 34678899999999999999988
No 51
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=72.30 E-value=16 Score=29.35 Aligned_cols=21 Identities=24% Similarity=0.523 Sum_probs=18.5
Q ss_pred cchHHHHHHHHhCCCeEEEEe
Q 044801 84 AGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSi 104 (238)
.-|.+.|++||++|++|++-+
T Consensus 44 Dllge~v~a~h~~Girv~ay~ 64 (132)
T PF14871_consen 44 DLLGEQVEACHERGIRVPAYF 64 (132)
T ss_pred CHHHHHHHHHHHCCCEEEEEE
Confidence 568999999999999999766
No 52
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=72.08 E-value=43 Score=31.06 Aligned_cols=71 Identities=15% Similarity=0.080 Sum_probs=44.1
Q ss_pred cccccceeeeecC-CCC------------------chhHHHHHHHHHhhcCCCceEEEecCCCC---C-CCcchhhhhc-
Q 044801 141 GDAVLDGIDFDIE-GGT------------------NQHWDELARALSNFSQQKKVYLAAAPQCP---Y-PDAWLGGALG- 196 (238)
Q Consensus 141 ~~~~lDGiDiD~E-~~~------------------~~~~~~li~~LR~~~~~~~~liTaAP~~~---~-~d~~~~~~~~- 196 (238)
.+.|||.|-||+= .|+ ......|++..|+.+...+..||+..-.. . .+..++.-+.
T Consensus 134 a~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~vSaDVfG~~~~~~~~~~iGQ~~~~ 213 (316)
T PF13200_consen 134 AKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPYGVPVSADVFGYVAWSPDDMGIGQDFEK 213 (316)
T ss_pred HHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHcCCCEEEEecccccccCCCCCcCCCHHH
Confidence 4579999999964 232 13456777888876644566788775421 1 1222221111
Q ss_pred -cCcccEEEeeecCCC
Q 044801 197 -TGLFDYVWVQFYNNP 211 (238)
Q Consensus 197 -~~~~D~i~vqfYnn~ 211 (238)
...+|+|.+|.|-+.
T Consensus 214 ~a~~vD~IsPMiYPSh 229 (316)
T PF13200_consen 214 IAEYVDYISPMIYPSH 229 (316)
T ss_pred HhhhCCEEEecccccc
Confidence 578999999998775
No 53
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=71.78 E-value=26 Score=32.96 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=19.2
Q ss_pred ccchHHHHHHHHhCCCeEEEEe
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSi 104 (238)
-+.+++.++.+|++|-|+++=|
T Consensus 82 i~~~k~l~davh~~G~~i~~QL 103 (382)
T cd02931 82 IRTAKEMTERVHAYGTKIFLQL 103 (382)
T ss_pred hHHHHHHHHHHHHcCCEEEEEc
Confidence 3568888899999999999998
No 54
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=71.21 E-value=16 Score=33.40 Aligned_cols=64 Identities=14% Similarity=0.096 Sum_probs=42.8
Q ss_pred CccchHHHHHHHHhCCCeEEEEe-------------------------cCC-------CC---cccCCCHHHHHHHHHHH
Q 044801 82 GCAGLSNEIKTCQGQGIKVLLSI-------------------------GGA-------SG---SYSLSSADDARQVAQYL 126 (238)
Q Consensus 82 ~~~~l~~~I~~~q~~g~KVlLSi-------------------------GG~-------~~---~~~~~s~~~~~~fa~~l 126 (238)
.-++.++.|+.+|++|+||++++ |+. .+ -..|++++.++-|.+.+
T Consensus 71 ~FPdp~~mi~~L~~~g~k~~~~i~P~i~~~~~~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~ww~~~~ 150 (317)
T cd06599 71 RFPDPAAFVAKFHERGIRLAPNIKPGLLQDHPRYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREWWKEGV 150 (317)
T ss_pred cCCCHHHHHHHHHHCCCEEEEEeCCcccCCCHHHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHHHHHHH
Confidence 34678899999999999999966 110 01 12356666666666644
Q ss_pred HHhhcCCCCCcccccccccceeeeecCCC
Q 044801 127 WDNFLGGQSSSRPLGDAVLDGIDFDIEGG 155 (238)
Q Consensus 127 ~~~f~~g~s~~r~~~~~~lDGiDiD~E~~ 155 (238)
- +.+.+.|+||+=+|...+
T Consensus 151 ~----------~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 151 K----------EALLDLGIDSTWNDNNEY 169 (317)
T ss_pred H----------HHHhcCCCcEEEecCCCC
Confidence 2 344678999998886543
No 55
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=70.92 E-value=19 Score=32.29 Aligned_cols=76 Identities=21% Similarity=0.312 Sum_probs=46.8
Q ss_pred chHHHHHHHH-hCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCCc------
Q 044801 85 GLSNEIKTCQ-GQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGTN------ 157 (238)
Q Consensus 85 ~l~~~I~~~q-~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~~------ 157 (238)
...+.|+.++ ..+++|++||+|.. .+.|++.. +.+.++|+|+|+|++-.|..
T Consensus 76 ~~~~~~~~~~~~~~~p~ivsi~g~~----------~~~~~~~a-----------~~~~~~G~d~iElN~~cP~~~~~g~~ 134 (296)
T cd04740 76 AFLEELLPWLREFGTPVIASIAGST----------VEEFVEVA-----------EKLADAGADAIELNISCPNVKGGGMA 134 (296)
T ss_pred HHHHHHHHHhhcCCCcEEEEEecCC----------HHHHHHHH-----------HHHHHcCCCEEEEECCCCCCCCCccc
Confidence 4455566554 36789999999842 34454421 23467899999999876531
Q ss_pred -----hhHHHHHHHHHhhcCCCceEEEecC
Q 044801 158 -----QHWDELARALSNFSQQKKVYLAAAP 182 (238)
Q Consensus 158 -----~~~~~li~~LR~~~~~~~~liTaAP 182 (238)
....++++++|+.. +....+=..|
T Consensus 135 ~~~~~~~~~eiv~~vr~~~-~~Pv~vKl~~ 163 (296)
T cd04740 135 FGTDPEAVAEIVKAVKKAT-DVPVIVKLTP 163 (296)
T ss_pred ccCCHHHHHHHHHHHHhcc-CCCEEEEeCC
Confidence 23457788888764 2233433444
No 56
>PLN02877 alpha-amylase/limit dextrinase
Probab=70.83 E-value=20 Score=38.11 Aligned_cols=20 Identities=15% Similarity=0.438 Sum_probs=18.5
Q ss_pred chHHHHHHHHhCCCeEEEEe
Q 044801 85 GLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 85 ~l~~~I~~~q~~g~KVlLSi 104 (238)
++++.|+.||++|++|+|=+
T Consensus 467 efk~mV~~lH~~GI~VImDV 486 (970)
T PLN02877 467 EFRKMVQALNRIGLRVVLDV 486 (970)
T ss_pred HHHHHHHHHHHCCCEEEEEE
Confidence 58999999999999999976
No 57
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=70.72 E-value=2.7 Score=32.24 Aligned_cols=25 Identities=20% Similarity=-0.079 Sum_probs=12.3
Q ss_pred CCCcchhhHHHHHHHHHHHhhccCC
Q 044801 1 MAHQFTLGKFLFCLLQLAALFTYTS 25 (238)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~ 25 (238)
||+|.-++..++|+.+||.++..++
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhh
Confidence 8966544422444444444554443
No 58
>PRK14706 glycogen branching enzyme; Provisional
Probab=69.34 E-value=48 Score=33.61 Aligned_cols=62 Identities=13% Similarity=0.079 Sum_probs=37.1
Q ss_pred ccccccCCCccEEEEceeeccC---CCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEe
Q 044801 42 LADACSSGNYGIVNIAFLTTFG---NSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 42 L~~~c~~~~~dvV~laF~~~~~---~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
|.++...-+||+|-|-=+..++ +-++-..++-.. .+.-++..+++..|++||++|++|+|-+
T Consensus 173 l~~ylk~lG~t~velmPv~e~~~~~~wGY~~~~~~~~-~~~~g~~~~~~~lv~~~H~~gi~VilD~ 237 (639)
T PRK14706 173 LGEYVTYMGYTHVELLGVMEHPFDGSWGYQVTGYYAP-TSRLGTPEDFKYLVNHLHGLGIGVILDW 237 (639)
T ss_pred HHHHHHHcCCCEEEccchhcCCCCCCCCcCccccccc-ccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4456666788888775443321 112211222110 1112356789999999999999999975
No 59
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=67.87 E-value=25 Score=32.15 Aligned_cols=64 Identities=17% Similarity=0.206 Sum_probs=43.8
Q ss_pred ccchHHHHHHHHhCCCeEEEEe----c----------------------C-------CCCc---ccCCCHHHHHHHHHHH
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSI----G----------------------G-------ASGS---YSLSSADDARQVAQYL 126 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSi----G----------------------G-------~~~~---~~~~s~~~~~~fa~~l 126 (238)
-++.++.|+.+|++|+||++.+ . | |.|. ..|++++.++-+.+.+
T Consensus 63 FPdp~~~i~~l~~~g~k~~~~~~P~i~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww~~~~ 142 (317)
T cd06600 63 FPEPKKLIDELHKRNVKLVTIVDPGIRVDQNYSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWWAGLF 142 (317)
T ss_pred CCCHHHHHHHHHHCCCEEEEEeeccccCCCCChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHHHHHH
Confidence 4667899999999999999886 1 1 1111 2345666666666654
Q ss_pred HHhhcCCCCCcccccccccceeeeecCCCC
Q 044801 127 WDNFLGGQSSSRPLGDAVLDGIDFDIEGGT 156 (238)
Q Consensus 127 ~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~ 156 (238)
- +.+.+.|+||+=+|.-.|.
T Consensus 143 ~----------~~~~~~gvdg~w~D~~Ep~ 162 (317)
T cd06600 143 S----------EWLNSQGVDGIWLDMNEPS 162 (317)
T ss_pred H----------HHhhcCCCceEEeeCCCCc
Confidence 3 3346899999999976654
No 60
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=67.53 E-value=9.3 Score=29.84 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=41.2
Q ss_pred ceEEEeCCCCCCccccccccCCCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHhCCC-eEEEEecC
Q 044801 28 VISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGI-KVLLSIGG 106 (238)
Q Consensus 28 ~v~~Ywg~~~~~~~L~~~c~~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~-KVlLSiGG 106 (238)
-=+.|-|..-....+.......+.|+|.+|+.... ..+.+++.++.++++|. ++.+-+||
T Consensus 28 ~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~-------------------~~~~~~~~~~~L~~~~~~~i~i~~GG 88 (122)
T cd02071 28 FEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGG-------------------HMTLFPEVIELLRELGAGDILVVGGG 88 (122)
T ss_pred CEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchh-------------------hHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 34567776533233444445678899999887531 12346778888888866 88899999
Q ss_pred CC
Q 044801 107 AS 108 (238)
Q Consensus 107 ~~ 108 (238)
..
T Consensus 89 ~~ 90 (122)
T cd02071 89 II 90 (122)
T ss_pred CC
Confidence 63
No 61
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=66.93 E-value=4.4 Score=35.17 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=22.7
Q ss_pred ccchHHHHHHHHhCCCeEEEEecCCCC
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSIGGASG 109 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSiGG~~~ 109 (238)
.+.+++.|+.++++|.+|.+-+||..-
T Consensus 153 ~~~~~~~i~~L~~~~~~~~i~vGG~~~ 179 (213)
T cd02069 153 LDEMVEVAEEMNRRGIKIPLLIGGAAT 179 (213)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEChhc
Confidence 466888999999889999999999653
No 62
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=66.88 E-value=34 Score=31.46 Aligned_cols=22 Identities=5% Similarity=0.122 Sum_probs=18.3
Q ss_pred ccchHHHHHHHHhCCCeEEEEe
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSi 104 (238)
-+.+++....+|+.|-|+++-|
T Consensus 81 i~~~~~l~~~vh~~G~~~~~Ql 102 (338)
T cd04733 81 LEAFREWAAAAKANGALIWAQL 102 (338)
T ss_pred HHHHHHHHHHHHhcCCEEEEEc
Confidence 4567888889999999998865
No 63
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=66.57 E-value=29 Score=30.70 Aligned_cols=98 Identities=15% Similarity=0.177 Sum_probs=57.2
Q ss_pred cchHHHHHHHHhCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC-------
Q 044801 84 AGLSNEIKTCQGQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT------- 156 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~------- 156 (238)
.-+.++|+.++ .+.+|++|+||. +.++....++.+ .+ ++|+|||+.--|.
T Consensus 55 ~~i~~e~~~~~-~~~~vivnv~~~-------~~ee~~~~a~~v--------------~~-~~d~IdiN~gCP~~~v~~~g 111 (231)
T TIGR00736 55 SYIIEQIKKAE-SRALVSVNVRFV-------DLEEAYDVLLTI--------------AE-HADIIEINAHCRQPEITEIG 111 (231)
T ss_pred HHHHHHHHHHh-hcCCEEEEEecC-------CHHHHHHHHHHH--------------hc-CCCEEEEECCCCcHHHcCCC
Confidence 44677888887 455999999994 344455555532 23 6999999988764
Q ss_pred --------chhHHHHHHHHHhhcCCCceEEEecCCCCCCCc-chhhhhccCcccEEEee
Q 044801 157 --------NQHWDELARALSNFSQQKKVYLAAAPQCPYPDA-WLGGALGTGLFDYVWVQ 206 (238)
Q Consensus 157 --------~~~~~~li~~LR~~~~~~~~liTaAP~~~~~d~-~~~~~~~~~~~D~i~vq 206 (238)
+....++++++|+. +....+=.-|..+..+. .+...+...-.|+|.|.
T Consensus 112 ~G~~Ll~dp~~l~~iv~av~~~--~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd 168 (231)
T TIGR00736 112 IGQELLKNKELLKEFLTKMKEL--NKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVD 168 (231)
T ss_pred CchhhcCCHHHHHHHHHHHHcC--CCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEe
Confidence 13455677777742 23333333333211010 12233345678888883
No 64
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=65.67 E-value=38 Score=31.37 Aligned_cols=21 Identities=10% Similarity=0.412 Sum_probs=17.8
Q ss_pred cchHHHHHHHHhCCCeEEEEe
Q 044801 84 AGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSi 104 (238)
+.+++.+..+|+.|-|+++-|
T Consensus 77 ~~~~~l~~~vh~~g~~~~~Ql 97 (343)
T cd04734 77 PGFRRLAEAVHAHGAVIMIQL 97 (343)
T ss_pred HHHHHHHHHHHhcCCeEEEec
Confidence 567788888999999999887
No 65
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=65.60 E-value=11 Score=34.28 Aligned_cols=66 Identities=12% Similarity=0.109 Sum_probs=40.0
Q ss_pred CccchHHHHHHHHhCCCeEEEEe---cCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCCch
Q 044801 82 GCAGLSNEIKTCQGQGIKVLLSI---GGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGTNQ 158 (238)
Q Consensus 82 ~~~~l~~~I~~~q~~g~KVlLSi---GG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~~~ 158 (238)
....+++.|++.+++|++|+|=. +|++. ..+... ..+.|.. +++.|+.||-+|+-..+.+
T Consensus 71 ~~~dl~elv~Ya~~KgVgi~lw~~~~~~~~~-~~~~~~-~~~~f~~---------------~~~~Gv~GvKidF~~~d~Q 133 (273)
T PF10566_consen 71 PDFDLPELVDYAKEKGVGIWLWYHSETGGNV-ANLEKQ-LDEAFKL---------------YAKWGVKGVKIDFMDRDDQ 133 (273)
T ss_dssp TT--HHHHHHHHHHTT-EEEEEEECCHTTBH-HHHHCC-HHHHHHH---------------HHHCTEEEEEEE--SSTSH
T ss_pred CccCHHHHHHHHHHcCCCEEEEEeCCcchhh-HhHHHH-HHHHHHH---------------HHHcCCCEEeeCcCCCCCH
Confidence 45789999999999999999854 22221 112222 2444544 3789999999999888765
Q ss_pred hHHHHH
Q 044801 159 HWDELA 164 (238)
Q Consensus 159 ~~~~li 164 (238)
..+++-
T Consensus 134 ~~v~~y 139 (273)
T PF10566_consen 134 EMVNWY 139 (273)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 66
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=65.58 E-value=41 Score=31.62 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=18.5
Q ss_pred ccchHHHHHHHHhCCCeEEEEe
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSi 104 (238)
-+.+++.+..+|+.|-|+++=|
T Consensus 77 i~~~~~l~d~vh~~Ga~i~~QL 98 (361)
T cd04747 77 LAGWKKVVDEVHAAGGKIAPQL 98 (361)
T ss_pred HHHHHHHHHHHHhcCCEEEEec
Confidence 4567778888999999999888
No 67
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=65.26 E-value=43 Score=31.04 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=18.4
Q ss_pred ccchHHHHHHHHhCCCeEEEEe
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSi 104 (238)
-+.+++.+..+|+.|-|+++=|
T Consensus 76 i~~~~~l~~~vh~~g~~~~~QL 97 (353)
T cd02930 76 AAGHRLITDAVHAEGGKIALQI 97 (353)
T ss_pred HHHHHHHHHHHHHcCCEEEeec
Confidence 4567788888999999998887
No 68
>PRK14705 glycogen branching enzyme; Provisional
Probab=64.11 E-value=29 Score=37.95 Aligned_cols=62 Identities=13% Similarity=0.022 Sum_probs=36.1
Q ss_pred ccccccCCCccEEEEceeeccCCC---CCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEe
Q 044801 42 LADACSSGNYGIVNIAFLTTFGNS---QTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 42 L~~~c~~~~~dvV~laF~~~~~~g---~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
|.++...-+||+|-|-=+..++.+ ++-..++-.. ++.-++..+++..|++||++|++|||=+
T Consensus 771 lldYlk~LGvt~IeLmPv~e~p~~~swGY~~~~y~ap-~~ryGt~~dfk~lVd~~H~~GI~VILD~ 835 (1224)
T PRK14705 771 LVDYVKWLGFTHVEFMPVAEHPFGGSWGYQVTSYFAP-TSRFGHPDEFRFLVDSLHQAGIGVLLDW 835 (1224)
T ss_pred HHHHHHHhCCCEEEECccccCCCCCCCCCCccccCCc-CcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 345556677888877522222111 1211222110 1112356789999999999999999974
No 69
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=63.15 E-value=9.1 Score=33.15 Aligned_cols=24 Identities=21% Similarity=0.454 Sum_probs=21.6
Q ss_pred CCccchHHHHHHHHhCCCeEEEEe
Q 044801 81 NGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 81 ~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
++-.++++.|++||++|+||+|-+
T Consensus 49 Gt~~d~~~Lv~~~h~~gi~VilD~ 72 (316)
T PF00128_consen 49 GTMEDFKELVDAAHKRGIKVILDV 72 (316)
T ss_dssp BHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred chhhhhhhhhhccccccceEEEee
Confidence 356789999999999999999987
No 70
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=62.58 E-value=17 Score=29.26 Aligned_cols=63 Identities=19% Similarity=0.292 Sum_probs=44.3
Q ss_pred cceEEEeCCCCCCccccccccCCCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHhCCC-eEEEEec
Q 044801 27 GVISVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGI-KVLLSIG 105 (238)
Q Consensus 27 ~~v~~Ywg~~~~~~~L~~~c~~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~-KVlLSiG 105 (238)
.-=++|.|..-....+...+...+.|+|.+|++.... ...+.+.++.+++++. ++.+-+|
T Consensus 31 G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~-------------------~~~~~~~~~~L~~~~~~~~~i~vG 91 (137)
T PRK02261 31 GFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHG-------------------EIDCRGLREKCIEAGLGDILLYVG 91 (137)
T ss_pred CCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccC-------------------HHHHHHHHHHHHhcCCCCCeEEEE
Confidence 4446888876544557777777889999999876421 2346777888887755 6778889
Q ss_pred CCC
Q 044801 106 GAS 108 (238)
Q Consensus 106 G~~ 108 (238)
|..
T Consensus 92 G~~ 94 (137)
T PRK02261 92 GNL 94 (137)
T ss_pred CCC
Confidence 954
No 71
>KOG2331 consensus Predicted glycosylhydrolase [General function prediction only]
Probab=62.51 E-value=17 Score=35.25 Aligned_cols=70 Identities=20% Similarity=0.199 Sum_probs=50.7
Q ss_pred HHHhCCCeEEEEe------cCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC----chhHH
Q 044801 92 TCQGQGIKVLLSI------GGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT----NQHWD 161 (238)
Q Consensus 92 ~~q~~g~KVlLSi------GG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~----~~~~~ 161 (238)
++|.+|+|||-.+ |++.....+.+++.++..|+.|.. +-.-.||||-=|++|..- -.++.
T Consensus 119 ~AHrHGV~vlGTFItEw~eg~~~c~~~La~~es~~~~~e~L~~----------l~~~fgFdGWLiNiEn~i~~~~i~~l~ 188 (526)
T KOG2331|consen 119 TAHRHGVKVLGTFITEWDEGKATCKEFLATEESVEMTVERLVE----------LARFFGFDGWLINIENKIDLAKIPNLI 188 (526)
T ss_pred hhhhcCceeeeeEEEEeccchhHHHHHHccchhHHHHHHHHHH----------HHHHhCCceEEEEeeeccChhhCccHH
Confidence 3588999999876 555555667888888888887754 335579999999999752 24666
Q ss_pred HHHHHHHhhc
Q 044801 162 ELARALSNFS 171 (238)
Q Consensus 162 ~li~~LR~~~ 171 (238)
.|+..|.+..
T Consensus 189 ~F~~~Lt~~~ 198 (526)
T KOG2331|consen 189 QFVSHLTKVL 198 (526)
T ss_pred HHHHHHHHHH
Confidence 6666666544
No 72
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=61.69 E-value=26 Score=29.82 Aligned_cols=58 Identities=17% Similarity=0.306 Sum_probs=38.5
Q ss_pred HHhCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC---------------c
Q 044801 93 CQGQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT---------------N 157 (238)
Q Consensus 93 ~q~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~---------------~ 157 (238)
....+.+++++|+|.. .+.|++.. +.+.+.|+|||||+.-.|. .
T Consensus 50 ~~~~~~p~~~qi~g~~----------~~~~~~aa-----------~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~ 108 (231)
T cd02801 50 RNPEERPLIVQLGGSD----------PETLAEAA-----------KIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDP 108 (231)
T ss_pred cCccCCCEEEEEcCCC----------HHHHHHHH-----------HHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCH
Confidence 3467889999999842 33444421 2335689999999965542 2
Q ss_pred hhHHHHHHHHHhhc
Q 044801 158 QHWDELARALSNFS 171 (238)
Q Consensus 158 ~~~~~li~~LR~~~ 171 (238)
....++++++|+..
T Consensus 109 ~~~~eii~~v~~~~ 122 (231)
T cd02801 109 ELVAEIVRAVREAV 122 (231)
T ss_pred HHHHHHHHHHHHhc
Confidence 33567888888765
No 73
>smart00642 Aamy Alpha-amylase domain.
Probab=61.60 E-value=22 Score=29.45 Aligned_cols=57 Identities=12% Similarity=0.151 Sum_probs=35.0
Q ss_pred cCCCccEEEEceeeccCC-----CCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEe
Q 044801 47 SSGNYGIVNIAFLTTFGN-----SQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 47 ~~~~~dvV~laF~~~~~~-----g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
..-+++.|-|+=+..... .++-..++.. .+|.-++-.++++.|++||++|+||++=+
T Consensus 29 ~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~-i~~~~Gt~~d~~~lv~~~h~~Gi~vilD~ 90 (166)
T smart00642 29 KDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQ-IDPRFGTMEDFKELVDAAHARGIKVILDV 90 (166)
T ss_pred HHCCCCEEEECcceeCCCCCCCCCCcCccccCC-CCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 456788887763332221 1221223321 12222456889999999999999999977
No 74
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=59.51 E-value=27 Score=32.32 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=18.1
Q ss_pred ccchHHHHHHHHhCCCeEEEE
Q 044801 83 CAGLSNEIKTCQGQGIKVLLS 103 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLS 103 (238)
-++.++.|+.+|++|.||+|.
T Consensus 84 FPdp~~mi~~Lh~~G~kv~l~ 104 (340)
T cd06597 84 WPNPKGMIDELHEQGVKVLLW 104 (340)
T ss_pred CCCHHHHHHHHHHCCCEEEEE
Confidence 367899999999999999874
No 75
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=59.27 E-value=25 Score=30.91 Aligned_cols=70 Identities=20% Similarity=0.198 Sum_probs=44.2
Q ss_pred CCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCccccccc-------ccc-eeeeecCCCCchhHHHHHHHHH
Q 044801 97 GIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDA-------VLD-GIDFDIEGGTNQHWDELARALS 168 (238)
Q Consensus 97 g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~-------~lD-GiDiD~E~~~~~~~~~li~~LR 168 (238)
.+.++++|+|++|+. -.+||+.|.+.|.+...+.=..++| -++ -..+||++|..-++..|.+.|.
T Consensus 6 ~~~iiIgIaG~SgSG-------KTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~ 78 (218)
T COG0572 6 EKVIIIGIAGGSGSG-------KTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLK 78 (218)
T ss_pred CceEEEEEeCCCCCC-------HHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHH
Confidence 345999999987653 2789999998884332111111222 222 3346788888777888888887
Q ss_pred hhcCC
Q 044801 169 NFSQQ 173 (238)
Q Consensus 169 ~~~~~ 173 (238)
.+..+
T Consensus 79 ~L~~g 83 (218)
T COG0572 79 DLKQG 83 (218)
T ss_pred HHHcC
Confidence 76633
No 76
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=58.22 E-value=16 Score=31.11 Aligned_cols=26 Identities=31% Similarity=0.594 Sum_probs=21.2
Q ss_pred ccchHHHHHHHHhCCC--eEEEEecCCC
Q 044801 83 CAGLSNEIKTCQGQGI--KVLLSIGGAS 108 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~--KVlLSiGG~~ 108 (238)
.+.+.+.|+.+|+++. +|-+-+||..
T Consensus 147 ~~~~~~~i~~lr~~~~~~~~~i~vGG~~ 174 (201)
T cd02070 147 MGGMKEVIEALKEAGLRDKVKVMVGGAP 174 (201)
T ss_pred HHHHHHHHHHHHHCCCCcCCeEEEECCc
Confidence 4567888999998877 8888999964
No 77
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=57.96 E-value=76 Score=28.66 Aligned_cols=116 Identities=16% Similarity=0.116 Sum_probs=60.2
Q ss_pred chHHHHHHHHhCCCeEEE--Ee------cCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC
Q 044801 85 GLSNEIKTCQGQGIKVLL--SI------GGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT 156 (238)
Q Consensus 85 ~l~~~I~~~q~~g~KVlL--Si------GG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~ 156 (238)
.+..-|+.+.++|+.+.| .- |.|+.....-+.++++.+.+.|...|..- +.++=..+=|. ......
T Consensus 89 ~~d~~i~~a~~~Gi~~~lv~~wg~~~~~~~Wg~~~~~m~~e~~~~Y~~yv~~Ry~~~---~NviW~l~gd~---~~~~~~ 162 (289)
T PF13204_consen 89 HLDRRIEKANELGIEAALVPFWGCPYVPGTWGFGPNIMPPENAERYGRYVVARYGAY---PNVIWILGGDY---FDTEKT 162 (289)
T ss_dssp HHHHHHHHHHHTT-EEEEESS-HHHHH-------TTSS-HHHHHHHHHHHHHHHTT----SSEEEEEESSS-----TTSS
T ss_pred HHHHHHHHHHHCCCeEEEEEEECCccccccccccccCCCHHHHHHHHHHHHHHHhcC---CCCEEEecCcc---CCCCcC
Confidence 467889999999998754 22 22332234456788999999999988221 12321112222 112233
Q ss_pred chhHHHHHHHHHhhcCCCceEEEecCCCCCCCcchhhhh-ccCcccEEEeeecCCC
Q 044801 157 NQHWDELARALSNFSQQKKVYLAAAPQCPYPDAWLGGAL-GTGLFDYVWVQFYNNP 211 (238)
Q Consensus 157 ~~~~~~li~~LR~~~~~~~~liTaAP~~~~~d~~~~~~~-~~~~~D~i~vqfYnn~ 211 (238)
.+.+.++++.+|+.-+. + ++|.-|... ....... +..-+|+..+|...+.
T Consensus 163 ~~~w~~~~~~i~~~dp~-~-L~T~H~~~~---~~~~~~~~~~~Wldf~~~Qsgh~~ 213 (289)
T PF13204_consen 163 RADWDAMARGIKENDPY-Q-LITIHPCGR---TSSPDWFHDEPWLDFNMYQSGHNR 213 (289)
T ss_dssp HHHHHHHHHHHHHH--S-S--EEEEE-BT---EBTHHHHTT-TT--SEEEB--S--
T ss_pred HHHHHHHHHHHHhhCCC-C-cEEEeCCCC---CCcchhhcCCCcceEEEeecCCCc
Confidence 57889999999997633 3 999998653 2222222 2455899999986543
No 78
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=57.04 E-value=77 Score=29.09 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=47.8
Q ss_pred ccchHHHHHHHH-hCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCCc----
Q 044801 83 CAGLSNEIKTCQ-GQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGTN---- 157 (238)
Q Consensus 83 ~~~l~~~I~~~q-~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~~---- 157 (238)
.....+.|+..+ +.++.|++||+|.+ .++..+.|.. +.+.|.|+|+|++-.+..
T Consensus 86 ~d~~~~~i~~~~~~~~~pvi~sI~g~~-------~~e~~~~a~~--------------~~~agad~ielN~scpp~~~~~ 144 (334)
T PRK07565 86 PEEYLELIRRAKEAVDIPVIASLNGSS-------AGGWVDYARQ--------------IEQAGADALELNIYYLPTDPDI 144 (334)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEeccCC-------HHHHHHHHHH--------------HHHcCCCEEEEeCCCCCCCCCC
Confidence 345566776664 34689999998832 2233344442 356789999998754221
Q ss_pred ------hhHHHHHHHHHhhcCCCceEEEecC
Q 044801 158 ------QHWDELARALSNFSQQKKVYLAAAP 182 (238)
Q Consensus 158 ------~~~~~li~~LR~~~~~~~~liTaAP 182 (238)
+.+.++++++|+.. ....++=..|
T Consensus 145 ~g~~~~~~~~eil~~v~~~~-~iPV~vKl~p 174 (334)
T PRK07565 145 SGAEVEQRYLDILRAVKSAV-SIPVAVKLSP 174 (334)
T ss_pred ccccHHHHHHHHHHHHHhcc-CCcEEEEeCC
Confidence 23667888888764 2345555555
No 79
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=56.87 E-value=80 Score=29.59 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=19.3
Q ss_pred CccchHHHHHHHHhCCCeEEEEe
Q 044801 82 GCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 82 ~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
..+.+++.+..+|++|-||++=|
T Consensus 81 ~i~~~~~l~~~vh~~G~~i~~QL 103 (370)
T cd02929 81 DIRNLAAMTDAVHKHGALAGIEL 103 (370)
T ss_pred HHHHHHHHHHHHHHCCCeEEEec
Confidence 35678888889999999998887
No 80
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=56.63 E-value=36 Score=31.08 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=42.3
Q ss_pred CccchHHHHHHHHhCCCeEEEEe----------------cCC----------------CC---cccCCCHHHHHHHHHHH
Q 044801 82 GCAGLSNEIKTCQGQGIKVLLSI----------------GGA----------------SG---SYSLSSADDARQVAQYL 126 (238)
Q Consensus 82 ~~~~l~~~I~~~q~~g~KVlLSi----------------GG~----------------~~---~~~~~s~~~~~~fa~~l 126 (238)
.-++.++.|+.+|++|+||++.+ .|. .+ -..|++++.++-|.+.+
T Consensus 68 ~FPdp~~mi~~L~~~G~k~~~~v~P~v~~~~~~y~e~~~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w~~~~~ 147 (317)
T cd06598 68 AFPDPAGMIADLAKKGVKTIVITEPFVLKNSKNWGEAVKAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAWFHDNY 147 (317)
T ss_pred cCCCHHHHHHHHHHcCCcEEEEEcCcccCCchhHHHHHhCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHHHHHHH
Confidence 34667899999999999999988 121 01 12356666666666643
Q ss_pred HHhhcCCCCCcccccccccceeeeecCC
Q 044801 127 WDNFLGGQSSSRPLGDAVLDGIDFDIEG 154 (238)
Q Consensus 127 ~~~f~~g~s~~r~~~~~~lDGiDiD~E~ 154 (238)
+.+.+.|+||+=+|.-.
T Consensus 148 -----------~~~~~~Gvdg~w~D~~E 164 (317)
T cd06598 148 -----------KKLIDQGVTGWWGDLGE 164 (317)
T ss_pred -----------HHhhhCCccEEEecCCC
Confidence 23367899999999854
No 81
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=56.49 E-value=27 Score=30.92 Aligned_cols=54 Identities=19% Similarity=0.108 Sum_probs=39.6
Q ss_pred CccchHHHHHHHHhCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCC
Q 044801 82 GCAGLSNEIKTCQGQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGG 155 (238)
Q Consensus 82 ~~~~l~~~I~~~q~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~ 155 (238)
.-++.++.|+.+|++|+||++.+== .-++-|.+.+. +.+.+.|+||+=+|.-.+
T Consensus 64 ~Fpdp~~~i~~l~~~g~~~~~~~~P----------~v~~w~~~~~~----------~~~~~~Gvdg~w~D~~E~ 117 (265)
T cd06589 64 KFPNPKSMIDELHDNGVKLVLWIDP----------YIREWWAEVVK----------KLLVSLGVDGFWTDMGEP 117 (265)
T ss_pred hCCCHHHHHHHHHHCCCEEEEEeCh----------hHHHHHHHHHH----------HhhccCCCCEEeccCCCC
Confidence 3467889999999999999998821 11566666543 234678999999997654
No 82
>cd06417 GH25_LysA-like LysA is a cell wall endolysin produced by Lactobacillus fermentum, which degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. The N-terminal glycosyl hydrolase family 25 (GH25) domain of LysA has sequence similarity with other murein hydrolase catalytic domains while the C-terminal domain has sequence similarity with putative bacterial cell wall-binding SH3b domains. This domain family also includes LysL of Lactococcus lactis.
Probab=56.01 E-value=39 Score=28.38 Aligned_cols=17 Identities=6% Similarity=0.087 Sum_probs=14.8
Q ss_pred cchHHHHHHHHhCCCeE
Q 044801 84 AGLSNEIKTCQGQGIKV 100 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KV 100 (238)
+.+.+.++.|++.|++|
T Consensus 36 ~~f~~n~~~A~~aGl~~ 52 (195)
T cd06417 36 PSWRSQAAQAIAAGKLL 52 (195)
T ss_pred hHHHHHHHHHHHcCCce
Confidence 67899999999999764
No 83
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=55.27 E-value=30 Score=35.53 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=19.1
Q ss_pred cchHHHHHHHHhCCCeEEEEe
Q 044801 84 AGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSi 104 (238)
.+++..|+++|++|+-|||=+
T Consensus 265 ~EfK~mV~~lHkaGI~VILDV 285 (697)
T COG1523 265 KEFKDMVKALHKAGIEVILDV 285 (697)
T ss_pred HHHHHHHHHHHHcCCEEEEEE
Confidence 478899999999999999977
No 84
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=54.57 E-value=58 Score=27.40 Aligned_cols=72 Identities=19% Similarity=0.278 Sum_probs=40.0
Q ss_pred cchHHHHHHHHhCCCeEEEEecCCCCccc-CCCHHHHHHHHHHHHHhhcCCCCCcccccccccc---eeeeecCCCCc--
Q 044801 84 AGLSNEIKTCQGQGIKVLLSIGGASGSYS-LSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLD---GIDFDIEGGTN-- 157 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSiGG~~~~~~-~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lD---GiDiD~E~~~~-- 157 (238)
+.+.+.++.|++.|++| |. .++. ..+.+++++=|+..++. +++++++ -+=||+|....
T Consensus 42 ~~~~~n~~~A~~aGl~v----G~--Yhf~~~~~~~~a~~eA~~f~~~----------~~~~~~~~~~~~~lD~E~~~~~~ 105 (192)
T cd06522 42 PYAASQIANAKAAGLKV----SA--YHYAHYTSAADAQAEARYFANT----------AKSLGLSKNTVMVADMEDSSSSG 105 (192)
T ss_pred hHHHHHHHHHHHCCCee----EE--EEEEecCChHHHHHHHHHHHHH----------HHHcCCCCCCceEEEeecCCCcc
Confidence 67899999999999875 33 2222 22333333333333321 1223332 13478897542
Q ss_pred ---hhHHHHHHHHHhhc
Q 044801 158 ---QHWDELARALSNFS 171 (238)
Q Consensus 158 ---~~~~~li~~LR~~~ 171 (238)
....+|++++|++-
T Consensus 106 ~~~~~~~~F~~~v~~~g 122 (192)
T cd06522 106 NATANVNAFWQTMKAAG 122 (192)
T ss_pred hHHHHHHHHHHHHHHcC
Confidence 34467788888753
No 85
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=53.96 E-value=1.4e+02 Score=26.52 Aligned_cols=45 Identities=13% Similarity=0.215 Sum_probs=34.3
Q ss_pred cchHHHHHHHHhCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHh
Q 044801 84 AGLSNEIKTCQGQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDN 129 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~ 129 (238)
..+.+.|+.+-+.|++-++- .|-+|....-|.+++..+.+.+...
T Consensus 22 ~~l~~~i~~l~~~Gv~gi~~-~Gs~GE~~~ls~~Er~~~~~~~~~~ 66 (292)
T PRK03170 22 AALRKLVDYLIANGTDGLVV-VGTTGESPTLTHEEHEELIRAVVEA 66 (292)
T ss_pred HHHHHHHHHHHHcCCCEEEE-CCcCCccccCCHHHHHHHHHHHHHH
Confidence 56889999999999988874 4556665566677889998876553
No 86
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=53.96 E-value=50 Score=30.94 Aligned_cols=99 Identities=16% Similarity=0.235 Sum_probs=58.7
Q ss_pred CCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHH
Q 044801 49 GNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSIGGASGSYSLSSADDARQVAQYLWD 128 (238)
Q Consensus 49 ~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~ 128 (238)
.+.|.|.+++- .++ ...+..||. -.++++.|+.+|++|+|+.+.+-..- -.++.+.+-+.|
T Consensus 25 ~GADaVY~G~~-~~~-~R~~a~nfs---------~~~l~e~i~~ah~~gkk~~V~~N~~~------~~~~~~~~~~~l-- 85 (347)
T COG0826 25 AGADAVYIGEK-EFG-LRRRALNFS---------VEDLAEAVELAHSAGKKVYVAVNTLL------HNDELETLERYL-- 85 (347)
T ss_pred cCCCEEEeCCc-ccc-cccccccCC---------HHHHHHHHHHHHHcCCeEEEEecccc------ccchhhHHHHHH--
Confidence 34788888765 222 222223554 36699999999999999999985532 111222222221
Q ss_pred hhcCCCCCcccccccccceeeeecCCCCchhHHHHHHHHHhhcCCCceEEEecCCCC
Q 044801 129 NFLGGQSSSRPLGDAVLDGIDFDIEGGTNQHWDELARALSNFSQQKKVYLAAAPQCP 185 (238)
Q Consensus 129 ~f~~g~s~~r~~~~~~lDGiDiD~E~~~~~~~~~li~~LR~~~~~~~~liTaAP~~~ 185 (238)
+.+.+.|.|++=+ .+ .-++..+|+.. ++.-|.+.+|+.
T Consensus 86 ---------~~l~e~GvDaviv----~D----pg~i~l~~e~~--p~l~ih~S~q~~ 123 (347)
T COG0826 86 ---------DRLVELGVDAVIV----AD----PGLIMLARERG--PDLPIHVSTQAN 123 (347)
T ss_pred ---------HHHHHcCCCEEEE----cC----HHHHHHHHHhC--CCCcEEEeeeEe
Confidence 2345678999876 22 23555566543 455677777764
No 87
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=53.95 E-value=40 Score=31.90 Aligned_cols=61 Identities=23% Similarity=0.220 Sum_probs=39.4
Q ss_pred ccchHHHHHHHHhCCCeEEEEecC-------------------C---------------C---CcccCCCHHHHHHHHHH
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSIGG-------------------A---------------S---GSYSLSSADDARQVAQY 125 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSiGG-------------------~---------------~---~~~~~~s~~~~~~fa~~ 125 (238)
-++..+.|+.+|++|+||++++== . . +-..|++++.++-+.+.
T Consensus 82 FPd~~~~~~~l~~~G~~~~~~~~P~v~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~~~ 161 (441)
T PF01055_consen 82 FPDPKQMIDELHDQGIKVVLWVHPFVSNDSPDYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDWWKEQ 161 (441)
T ss_dssp TTTHHHHHHHHHHTT-EEEEEEESEEETTTTB-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHHHHHH
T ss_pred ccchHHHHHhHhhCCcEEEEEeecccCCCCCcchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHHHHHH
Confidence 467899999999999999999821 1 0 00124555555555554
Q ss_pred HHHhhcCCCCCcccccccccceeeeecC
Q 044801 126 LWDNFLGGQSSSRPLGDAVLDGIDFDIE 153 (238)
Q Consensus 126 l~~~f~~g~s~~r~~~~~~lDGiDiD~E 153 (238)
+- +.++++|+||+=+|+-
T Consensus 162 ~~----------~~~~~~Gvdg~w~D~~ 179 (441)
T PF01055_consen 162 LK----------ELLDDYGVDGWWLDFG 179 (441)
T ss_dssp HH----------HHHTTST-SEEEEEST
T ss_pred HH----------HHHhccCCceEEeecC
Confidence 43 3457789999999983
No 88
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=52.88 E-value=69 Score=26.60 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=43.4
Q ss_pred ccchHHHHHHHHhCCCeEEEEecCCCCcccC-CCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCCc----
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSIGGASGSYSL-SSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGTN---- 157 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSiGG~~~~~~~-~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~~---- 157 (238)
.+.+...++.|++.|++| |. .++.. .+.+++++-|+..++.. +. .-.-+-||+|....
T Consensus 38 D~~f~~n~~~a~~aGl~v----G~--Yhf~~~~~~~~a~~eA~~f~~~~----------~~-~~~~~~lD~E~~~~~~~~ 100 (177)
T cd06523 38 DLKYKNNIKEFKKRGIPF----GV--YAFARGTSTADAKAEARDFYNRA----------NK-KPTFYVLDVEVTSMSDMN 100 (177)
T ss_pred CHHHHHHHHHHHHcCCCe----EE--EEEeccCCHHHHHHHHHHHHHHh----------cC-CCceEEEeeccCCcchHH
Confidence 377999999999999865 32 33322 24556677777665532 11 11125588998753
Q ss_pred hhHHHHHHHHHhh
Q 044801 158 QHWDELARALSNF 170 (238)
Q Consensus 158 ~~~~~li~~LR~~ 170 (238)
....+|+++++++
T Consensus 101 ~~~~~f~~~v~~~ 113 (177)
T cd06523 101 AGVQAFISELRRL 113 (177)
T ss_pred HHHHHHHHHHHHc
Confidence 2345667777665
No 89
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=52.58 E-value=26 Score=29.79 Aligned_cols=34 Identities=26% Similarity=0.413 Sum_probs=24.1
Q ss_pred chHHHHHHHHhCCCeEEEEe---cCCCCcccCCCHHHHHHHHH
Q 044801 85 GLSNEIKTCQGQGIKVLLSI---GGASGSYSLSSADDARQVAQ 124 (238)
Q Consensus 85 ~l~~~I~~~q~~g~KVlLSi---GG~~~~~~~~s~~~~~~fa~ 124 (238)
.+++.++.||++||+|++=+ +| +..+..+-+|-.
T Consensus 32 ~l~~~v~~~~~~gK~vfVHiDli~G------l~~D~~~i~~L~ 68 (175)
T PF04309_consen 32 NLKDIVKRLKAAGKKVFVHIDLIEG------LSRDEAGIEYLK 68 (175)
T ss_dssp CHHHHHHHHHHTT-EEEEECCGEET------B-SSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEehhcCC------CCCCHHHHHHHH
Confidence 48899999999999999965 66 555555555544
No 90
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=51.50 E-value=1.2e+02 Score=27.72 Aligned_cols=78 Identities=21% Similarity=0.263 Sum_probs=47.0
Q ss_pred cchHHHHHHHHh-CCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC-c----
Q 044801 84 AGLSNEIKTCQG-QGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT-N---- 157 (238)
Q Consensus 84 ~~l~~~I~~~q~-~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~-~---- 157 (238)
..+.+.|+.+++ .++.|++||.|.+ .++-.+.|. .+.+.+.|+|+|++-.+. .
T Consensus 85 ~~~~~~i~~~~~~~~~pvi~si~g~~-------~~~~~~~a~--------------~~~~~gad~iElN~s~~~~~~~~~ 143 (325)
T cd04739 85 EEYLELIRRAKRAVSIPVIASLNGVS-------AGGWVDYAR--------------QIEEAGADALELNIYALPTDPDIS 143 (325)
T ss_pred HHHHHHHHHHHhccCCeEEEEeCCCC-------HHHHHHHHH--------------HHHhcCCCEEEEeCCCCCCCCCcc
Confidence 445566666543 3788999997722 222223333 346678999999996532 1
Q ss_pred -----hhHHHHHHHHHhhcCCCceEEEecCC
Q 044801 158 -----QHWDELARALSNFSQQKKVYLAAAPQ 183 (238)
Q Consensus 158 -----~~~~~li~~LR~~~~~~~~liTaAP~ 183 (238)
..+.++++++|+.. ....++=.+|.
T Consensus 144 g~~~~~~~~eiv~~v~~~~-~iPv~vKl~p~ 173 (325)
T cd04739 144 GAEVEQRYLDILRAVKSAV-TIPVAVKLSPF 173 (325)
T ss_pred cchHHHHHHHHHHHHHhcc-CCCEEEEcCCC
Confidence 23457788888764 34455555554
No 91
>PLN03244 alpha-amylase; Provisional
Probab=51.03 E-value=30 Score=36.22 Aligned_cols=24 Identities=21% Similarity=0.376 Sum_probs=21.3
Q ss_pred CCccchHHHHHHHHhCCCeEEEEe
Q 044801 81 NGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 81 ~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
++..+|+..|.+||++|+.|||=+
T Consensus 438 GTPeDLK~LVD~aH~~GI~VILDv 461 (872)
T PLN03244 438 GTPDDFKRLVDEAHGLGLLVFLDI 461 (872)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEe
Confidence 356789999999999999999975
No 92
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=50.85 E-value=64 Score=35.30 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=20.4
Q ss_pred CccchHHHHHHHHhCCCeEEEEe
Q 044801 82 GCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 82 ~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
...++++.|++||++|++|||=+
T Consensus 245 ~~~efk~lV~~~H~~GI~VILDv 267 (1221)
T PRK14510 245 GEEEFAQAIKEAQSAGIAVILDV 267 (1221)
T ss_pred cHHHHHHHHHHHHHCCCEEEEEE
Confidence 45689999999999999999975
No 93
>PRK10426 alpha-glucosidase; Provisional
Probab=50.84 E-value=48 Score=33.57 Aligned_cols=61 Identities=18% Similarity=0.175 Sum_probs=43.3
Q ss_pred CccchHHHHHHHHhCCCeEEEEecCC----------------------------------CCcccCCCHHHHHHHHHHHH
Q 044801 82 GCAGLSNEIKTCQGQGIKVLLSIGGA----------------------------------SGSYSLSSADDARQVAQYLW 127 (238)
Q Consensus 82 ~~~~l~~~I~~~q~~g~KVlLSiGG~----------------------------------~~~~~~~s~~~~~~fa~~l~ 127 (238)
.-|+.++.|+.+|++|+||++.+==. .+-..|++++.++.|.+.+-
T Consensus 267 ~FPdp~~mi~~L~~~G~k~v~~i~P~v~~~~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww~~~~~ 346 (635)
T PRK10426 267 RYPQLDSRIKQLNEEGIQFLGYINPYLASDGDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWFKEVIK 346 (635)
T ss_pred hCCCHHHHHHHHHHCCCEEEEEEcCccCCCCHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHHHHHHH
Confidence 45778999999999999999998110 01123667777777777543
Q ss_pred HhhcCCCCCcccccccccceeeeec
Q 044801 128 DNFLGGQSSSRPLGDAVLDGIDFDI 152 (238)
Q Consensus 128 ~~f~~g~s~~r~~~~~~lDGiDiD~ 152 (238)
+.+.+.|+||+=.|.
T Consensus 347 ----------~~~~~~Gvdg~w~D~ 361 (635)
T PRK10426 347 ----------KNMIGLGCSGWMADF 361 (635)
T ss_pred ----------HHHhhcCCCEEeeeC
Confidence 345678999997774
No 94
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=50.50 E-value=30 Score=34.11 Aligned_cols=60 Identities=10% Similarity=0.171 Sum_probs=36.5
Q ss_pred ccccCCCccEEEEc--eeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEe
Q 044801 44 DACSSGNYGIVNIA--FLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 44 ~~c~~~~~dvV~la--F~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
++...-++|+|-|. |..+....++-..|+-. -+|.-++-.++++.|++||++|+||+|=+
T Consensus 34 ~yl~~lG~~~i~l~Pi~~~~~~~~gY~~~d~~~-id~~~Gt~~~~~~lv~~ah~~gi~vilD~ 95 (543)
T TIGR02403 34 DYLKKLGVDYIWLNPFYVSPQKDNGYDVSDYYA-INPLFGTMADFEELVSEAKKRNIKIMLDM 95 (543)
T ss_pred HHHHHcCCCEEEECCcccCCCCCCCCCccccCc-cCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 34455678888776 22221112232223221 13333466889999999999999999975
No 95
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.95 E-value=24 Score=33.98 Aligned_cols=118 Identities=17% Similarity=0.159 Sum_probs=69.3
Q ss_pred CccchHHHHHHHHhCCCeEEE--EecCCCCc--------------------ccC-----------CCHHHHHHHHHHHHH
Q 044801 82 GCAGLSNEIKTCQGQGIKVLL--SIGGASGS--------------------YSL-----------SSADDARQVAQYLWD 128 (238)
Q Consensus 82 ~~~~l~~~I~~~q~~g~KVlL--SiGG~~~~--------------------~~~-----------~s~~~~~~fa~~l~~ 128 (238)
+-.-|..-|+.+|++|.+|.- ..|..+-. +.. +--.++++|..+++
T Consensus 113 g~DpLa~~I~~AHkr~l~v~aWf~~~~~a~~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv- 191 (418)
T COG1649 113 GYDPLAFVIAEAHKRGLEVHAWFNPYRMAPPTSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLV- 191 (418)
T ss_pred CCChHHHHHHHHHhcCCeeeechhhcccCCCCChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHH-
Confidence 346689999999999999873 22221100 000 11135677777654
Q ss_pred hhcCCCCCcccccccccceeeeecC----CCC-------------c----------------hhHHHHHH----HHHhhc
Q 044801 129 NFLGGQSSSRPLGDAVLDGIDFDIE----GGT-------------N----------------QHWDELAR----ALSNFS 171 (238)
Q Consensus 129 ~f~~g~s~~r~~~~~~lDGiDiD~E----~~~-------------~----------------~~~~~li~----~LR~~~ 171 (238)
...+.+|.+|||-||-- .+. . ++...|++ ++|+.
T Consensus 192 --------~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VKav- 262 (418)
T COG1649 192 --------VEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVKAV- 262 (418)
T ss_pred --------HHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHHhh-
Confidence 46789999999999932 110 0 12233443 34443
Q ss_pred CCCceEEEecCCC-CCCC-cchh----hh---hccCcccEEEeeecCC
Q 044801 172 QQKKVYLAAAPQC-PYPD-AWLG----GA---LGTGLFDYVWVQFYNN 210 (238)
Q Consensus 172 ~~~~~liTaAP~~-~~~d-~~~~----~~---~~~~~~D~i~vqfYnn 210 (238)
.+...+|+||-- .... -.++ +. +..+.+|+|-+|.|-+
T Consensus 263 -Kp~v~~svsp~n~~~~~~f~y~~~~qDw~~Wv~~G~iD~l~pqvYr~ 309 (418)
T COG1649 263 -KPNVKFSVSPFNPLGSATFAYDYFLQDWRRWVRQGLIDELAPQVYRT 309 (418)
T ss_pred -CCCeEEEEccCCCCCccceehhhhhhhHHHHHHcccHhhhhhhhhcc
Confidence 467889999931 1111 0122 11 2368999999999987
No 96
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=49.44 E-value=64 Score=29.05 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=19.7
Q ss_pred ccchHHHHHHHHhCCCeEEEEe
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSi 104 (238)
-++.++.|+.+|++|.||++++
T Consensus 73 FPdp~~mi~~Lh~~G~k~v~~v 94 (292)
T cd06595 73 FPDPEKLLQDLHDRGLKVTLNL 94 (292)
T ss_pred CCCHHHHHHHHHHCCCEEEEEe
Confidence 4678899999999999999987
No 97
>PRK10785 maltodextrin glucosidase; Provisional
Probab=49.37 E-value=25 Score=35.16 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=35.4
Q ss_pred cCCCccEEEEc--eeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEe
Q 044801 47 SSGNYGIVNIA--FLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 47 ~~~~~dvV~la--F~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
..=++|.|-|. |-.+. +-++-..|+-. .+|.-++..++++.|++||++|.||||=+
T Consensus 189 ~~LGv~~I~L~Pif~s~s-~hgYd~~Dy~~-iDp~~Gt~~df~~Lv~~aH~rGikVilD~ 246 (598)
T PRK10785 189 KKLGVTALYLNPIFTAPS-VHKYDTEDYRH-VDPQLGGDAALLRLRHATQQRGMRLVLDG 246 (598)
T ss_pred HHcCCCEEEeCCcccCCC-CCCcCcccccc-cCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 45678888776 22221 11232233331 23433466889999999999999999876
No 98
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=49.01 E-value=36 Score=31.29 Aligned_cols=89 Identities=11% Similarity=0.046 Sum_probs=50.1
Q ss_pred CCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC---------------chhH
Q 044801 96 QGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT---------------NQHW 160 (238)
Q Consensus 96 ~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~---------------~~~~ 160 (238)
.+..|.+.|+|. +.+.|++.. +.+.+.|+|+|||+.-.|. +.-.
T Consensus 61 ~e~p~~vQl~g~----------~p~~~~~aA-----------~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~ 119 (312)
T PRK10550 61 SGTLVRIQLLGQ----------YPQWLAENA-----------ARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELI 119 (312)
T ss_pred CCCcEEEEeccC----------CHHHHHHHH-----------HHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHH
Confidence 356899999984 244555532 1235679999999988764 1234
Q ss_pred HHHHHHHHhhcCCCceEEEecCCCCCC--Ccch--hhhhccCcccEEEee
Q 044801 161 DELARALSNFSQQKKVYLAAAPQCPYP--DAWL--GGALGTGLFDYVWVQ 206 (238)
Q Consensus 161 ~~li~~LR~~~~~~~~liTaAP~~~~~--d~~~--~~~~~~~~~D~i~vq 206 (238)
.++++++|+.. +.++-+|.=-...+. +... ...+...-+|+|.|.
T Consensus 120 ~eiv~avr~~~-~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh 168 (312)
T PRK10550 120 YQGAKAMREAV-PAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVH 168 (312)
T ss_pred HHHHHHHHHhc-CCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEEC
Confidence 56777777755 223344443221221 1111 122334457888884
No 99
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=48.85 E-value=74 Score=27.86 Aligned_cols=63 Identities=14% Similarity=0.186 Sum_probs=40.6
Q ss_pred chHHHHHHHHhCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC--------
Q 044801 85 GLSNEIKTCQGQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT-------- 156 (238)
Q Consensus 85 ~l~~~I~~~q~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~-------- 156 (238)
.+...++.++..+..|.++|.|.+ .+....-|. .+.++ .|+|||+..-|.
T Consensus 60 ~~~~~~~~~~~~~~p~~vqi~g~~-------~~~~~~aa~--------------~~~~~-~~~ielN~gCP~~~v~~~g~ 117 (233)
T cd02911 60 FIEGEIKALKDSNVLVGVNVRSSS-------LEPLLNAAA--------------LVAKN-AAILEINAHCRQPEMVEAGA 117 (233)
T ss_pred HHHHHHHHhhccCCeEEEEecCCC-------HHHHHHHHH--------------HHhhc-CCEEEEECCCCcHHHhcCCc
Confidence 455677777777889999998842 222223333 23455 499999999764
Q ss_pred -------chhHHHHHHHHHh
Q 044801 157 -------NQHWDELARALSN 169 (238)
Q Consensus 157 -------~~~~~~li~~LR~ 169 (238)
++-..++++++|+
T Consensus 118 G~~Ll~~p~~l~eiv~avr~ 137 (233)
T cd02911 118 GEALLKDPERLSEFIKALKE 137 (233)
T ss_pred chHHcCCHHHHHHHHHHHHh
Confidence 1234677777776
No 100
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=48.83 E-value=1e+02 Score=28.46 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=18.2
Q ss_pred ccchHHHHHHHHhCCCeEEEEe
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSi 104 (238)
-+.+++.++.+|+.|-||++=|
T Consensus 79 i~~~k~l~~~vh~~Ga~i~~QL 100 (341)
T PF00724_consen 79 IPGLKKLADAVHAHGAKIIAQL 100 (341)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHhcCccceeec
Confidence 3567778888999999999966
No 101
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=48.31 E-value=17 Score=27.77 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=40.5
Q ss_pred EEEeCCCCCCccccccccCCCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHhCCC-eEEEEecCCC
Q 044801 30 SVYWGQNGNEGSLADACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGI-KVLLSIGGAS 108 (238)
Q Consensus 30 ~~Ywg~~~~~~~L~~~c~~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~-KVlLSiGG~~ 108 (238)
+.|-|..-....+...+...+.|+|.+|+..... ...+.+.|+.+|+.+. ++.+-+||..
T Consensus 30 V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~-------------------~~~~~~~i~~l~~~~~~~~~i~vGG~~ 90 (119)
T cd02067 30 VIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTH-------------------MTLMKEVIEELKEAGLDDIPVLVGGAI 90 (119)
T ss_pred EEECCCCCCHHHHHHHHHHcCCCEEEEecccccc-------------------HHHHHHHHHHHHHcCCCCCeEEEECCC
Confidence 3677755433456666677788999997753311 1345677777777777 8889999964
No 102
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=48.22 E-value=50 Score=27.90 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=14.7
Q ss_pred cchHHHHHHHHhCCCeE
Q 044801 84 AGLSNEIKTCQGQGIKV 100 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KV 100 (238)
+.+.+.++.|++.|++|
T Consensus 39 ~~~~~n~~~A~~aGl~~ 55 (199)
T cd06412 39 PRFSSQYNGAYNAGLIR 55 (199)
T ss_pred hhHHHHHHHHHHcCCce
Confidence 66899999999999855
No 103
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=47.97 E-value=2.3e+02 Score=26.23 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=18.7
Q ss_pred ccchHHHHHHHHhCCCeEEEEe
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSi 104 (238)
-+.+++.++.+|+.|-|+++-|
T Consensus 80 i~~~r~l~d~vh~~G~~i~~QL 101 (337)
T PRK13523 80 IEGLHKLVTFIHDHGAKAAIQL 101 (337)
T ss_pred HHHHHHHHHHHHhcCCEEEEEc
Confidence 4667888889999999999887
No 104
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=47.72 E-value=1e+02 Score=28.51 Aligned_cols=82 Identities=13% Similarity=0.021 Sum_probs=50.1
Q ss_pred cchHHHHHHHHhCCCeEEEEecCCCCcc---cCCCH----------HHHHHHHH-HHHHhhcCCCCCcccccccccceee
Q 044801 84 AGLSNEIKTCQGQGIKVLLSIGGASGSY---SLSSA----------DDARQVAQ-YLWDNFLGGQSSSRPLGDAVLDGID 149 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSiGG~~~~~---~~~s~----------~~~~~fa~-~l~~~f~~g~s~~r~~~~~~lDGiD 149 (238)
.-+++.+++||++|+|+-+-+..+.... ..... ..-+.+.+ ...+- +..++++|.+|.+=
T Consensus 138 Div~El~~A~rk~Glk~G~Y~S~~dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q------l~EL~~~Y~~d~lW 211 (346)
T PF01120_consen 138 DIVGELADACRKYGLKFGLYYSPWDWHHPDYPPDEEGDENGPADGPGNWQRYYNEYWLAQ------LRELLTRYKPDILW 211 (346)
T ss_dssp -HHHHHHHHHHHTT-EEEEEEESSSCCCTTTTSSCHCHHCC--HCCHHHHHHHHHHHHHH------HHHHHHCSTESEEE
T ss_pred CHHHHHHHHHHHcCCeEEEEecchHhcCcccCCCccCCcccccccchhhHhHhhhhhHHH------HHHHHhCCCcceEE
Confidence 4567888999999999999998875321 11111 11233333 22221 35677899999999
Q ss_pred eecCCCC---chhHHHHHHHHHhhc
Q 044801 150 FDIEGGT---NQHWDELARALSNFS 171 (238)
Q Consensus 150 iD~E~~~---~~~~~~li~~LR~~~ 171 (238)
+|.-.+. ...+..+.+.+|++-
T Consensus 212 fDg~~~~~~~~~~~~~~~~~i~~~q 236 (346)
T PF01120_consen 212 FDGGWPDPDEDWDSAELYNWIRKLQ 236 (346)
T ss_dssp EESTTSCCCTHHHHHHHHHHHHHHS
T ss_pred ecCCCCccccccCHHHHHHHHHHhC
Confidence 9977652 234566777777654
No 105
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=47.40 E-value=34 Score=33.91 Aligned_cols=59 Identities=12% Similarity=0.169 Sum_probs=36.7
Q ss_pred cccCCCccEEEEceee--ccCCCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEe
Q 044801 45 ACSSGNYGIVNIAFLT--TFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 45 ~c~~~~~dvV~laF~~--~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
+-..-++|+|-|+=+. +..+.++-..|+-. .+|.-++..++++.|++||++|.||+|=+
T Consensus 41 yl~~lGv~~i~l~P~~~~~~~~~gY~~~d~~~-id~~~Gt~~d~~~lv~~~h~~gi~vilD~ 101 (551)
T PRK10933 41 YLQKLGVDAIWLTPFYVSPQVDNGYDVANYTA-IDPTYGTLDDFDELVAQAKSRGIRIILDM 101 (551)
T ss_pred HHHhCCCCEEEECCCCCCCCCCCCCCcccCCC-cCcccCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 3345678888776222 21122332233332 23333466789999999999999999876
No 106
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=45.22 E-value=16 Score=34.47 Aligned_cols=51 Identities=22% Similarity=0.322 Sum_probs=32.8
Q ss_pred ccchHHHHHHHHhCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCC
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGG 133 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g 133 (238)
...+.+.|+-||+.|+-.||++||++.--.-.--+.+..+-...|++|..+
T Consensus 71 ~~Tv~kaV~i~kee~idflLAVGGGSViD~tK~IAa~a~y~GD~Wdi~~~~ 121 (384)
T COG1979 71 LETLMKAVEICKEENIDFLLAVGGGSVIDGTKFIAAAAKYDGDPWDILTKK 121 (384)
T ss_pred HHHHHHHHHHHHHcCceEEEEecCcchhhhHHHHHhhcccCCChHHHHhcC
Confidence 456788999999999999999999763110000112333444578877543
No 107
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=45.21 E-value=27 Score=32.29 Aligned_cols=56 Identities=16% Similarity=0.231 Sum_probs=37.3
Q ss_pred hCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC---------------chh
Q 044801 95 GQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT---------------NQH 159 (238)
Q Consensus 95 ~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~---------------~~~ 159 (238)
.....+.+.|+|.. .+.|++.. +.+.++|+|||||+.-.|. ...
T Consensus 62 ~~e~p~~vQl~g~~----------p~~~~~aA-----------~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~ 120 (333)
T PRK11815 62 PEEHPVALQLGGSD----------PADLAEAA-----------KLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPEL 120 (333)
T ss_pred CCCCcEEEEEeCCC----------HHHHHHHH-----------HHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHH
Confidence 45678999999943 34555531 2346689999999987663 123
Q ss_pred HHHHHHHHHhhc
Q 044801 160 WDELARALSNFS 171 (238)
Q Consensus 160 ~~~li~~LR~~~ 171 (238)
..++++++|+..
T Consensus 121 ~~eiv~avr~~v 132 (333)
T PRK11815 121 VADCVKAMKDAV 132 (333)
T ss_pred HHHHHHHHHHHc
Confidence 457777787754
No 108
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=44.06 E-value=54 Score=29.58 Aligned_cols=117 Identities=16% Similarity=0.200 Sum_probs=62.4
Q ss_pred ccchHHHHHHHHhCCCeEEEEe--cCCCCccc-------------------C---CCHHHHHHHHHHHHHhhcCCCCCcc
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSI--GGASGSYS-------------------L---SSADDARQVAQYLWDNFLGGQSSSR 138 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSi--GG~~~~~~-------------------~---~s~~~~~~fa~~l~~~f~~g~s~~r 138 (238)
-+.+++.+..+|+.|-|+++=| +|...... . -|.++-++..+....+ .+
T Consensus 76 ~~~~~~~~~~vh~~g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~a-------A~ 148 (327)
T cd02803 76 IPGLRKLTEAVHAHGAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAA-------AR 148 (327)
T ss_pred HHHHHHHHHHHHhCCCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHH-------HH
Confidence 4667788888999999887766 33221100 0 1223444444333221 23
Q ss_pred cccccccceeeeecCCC-------------------C-----chhHHHHHHHHHhhcCCCceEEEe--cCCCCCCCc-ch
Q 044801 139 PLGDAVLDGIDFDIEGG-------------------T-----NQHWDELARALSNFSQQKKVYLAA--APQCPYPDA-WL 191 (238)
Q Consensus 139 ~~~~~~lDGiDiD~E~~-------------------~-----~~~~~~li~~LR~~~~~~~~liTa--AP~~~~~d~-~~ 191 (238)
...+.|||||+|.--++ . .....+.++++|+.. ++++.|.. .|....++. ..
T Consensus 149 ~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~-g~d~~i~vris~~~~~~~g~~~ 227 (327)
T cd02803 149 RAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAV-GPDFPVGVRLSADDFVPGGLTL 227 (327)
T ss_pred HHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHc-CCCceEEEEechhccCCCCCCH
Confidence 34568999999986432 1 012357778888876 45554443 443322211 11
Q ss_pred ------hhhhccCcccEEEeee
Q 044801 192 ------GGALGTGLFDYVWVQF 207 (238)
Q Consensus 192 ------~~~~~~~~~D~i~vqf 207 (238)
-..+...-+|+|.|--
T Consensus 228 ~e~~~la~~l~~~G~d~i~vs~ 249 (327)
T cd02803 228 EEAIEIAKALEEAGVDALHVSG 249 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEeCC
Confidence 1122234489998753
No 109
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=43.49 E-value=1.2e+02 Score=27.96 Aligned_cols=84 Identities=21% Similarity=0.251 Sum_probs=50.0
Q ss_pred cchHHHHHHHHhCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCCc------
Q 044801 84 AGLSNEIKTCQGQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGTN------ 157 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~~------ 157 (238)
..+.+.|+..+ .++.|++||+|...+. .+...+.|++.+- -+++ +.|+|++++--|..
T Consensus 125 ~~~~~~l~~~~-~~~pvivsI~~~~~~~---~~~~~~d~~~~~~-----------~~~~-~ad~lelN~scP~~~g~~~~ 188 (344)
T PRK05286 125 DALAERLKKAY-RGIPLGINIGKNKDTP---LEDAVDDYLICLE-----------KLYP-YADYFTVNISSPNTPGLRDL 188 (344)
T ss_pred HHHHHHHHHhc-CCCcEEEEEecCCCCC---cccCHHHHHHHHH-----------HHHh-hCCEEEEEccCCCCCCcccc
Confidence 33455566555 5778999999853211 1123455665321 2233 48999999876642
Q ss_pred ---hhHHHHHHHHHhhcCC----CceEEEecCC
Q 044801 158 ---QHWDELARALSNFSQQ----KKVYLAAAPQ 183 (238)
Q Consensus 158 ---~~~~~li~~LR~~~~~----~~~liTaAP~ 183 (238)
..+.++++++|+.... ...++=..|.
T Consensus 189 ~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~ 221 (344)
T PRK05286 189 QYGEALDELLAALKEAQAELHGYVPLLVKIAPD 221 (344)
T ss_pred cCHHHHHHHHHHHHHHHhccccCCceEEEeCCC
Confidence 4567888888886521 3455555554
No 110
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=42.74 E-value=85 Score=26.29 Aligned_cols=17 Identities=18% Similarity=0.364 Sum_probs=15.6
Q ss_pred cchHHHHHHHHhCCCeE
Q 044801 84 AGLSNEIKTCQGQGIKV 100 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KV 100 (238)
+.+.+.++.|++.|++|
T Consensus 39 ~~f~~n~~~A~~aGl~~ 55 (196)
T cd06416 39 PNSVTNIKNARAAGLST 55 (196)
T ss_pred hHHHHHHHHHHHcCCcc
Confidence 67899999999999988
No 111
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=42.69 E-value=1.2e+02 Score=28.58 Aligned_cols=74 Identities=16% Similarity=0.164 Sum_probs=48.9
Q ss_pred chHHHHHHHH-hCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCCchhHHHH
Q 044801 85 GLSNEIKTCQ-GQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGTNQHWDEL 163 (238)
Q Consensus 85 ~l~~~I~~~q-~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~~~~~~~l 163 (238)
+..+.++..+ ..+..+++|+|= .+++ ...++.|.. ...++|-|=||.-++......++
T Consensus 83 ~~~~fv~~~~~~~~~~~~vavG~--------~~~d-~er~~~L~~------------~~~g~D~iviD~AhGhs~~~i~~ 141 (346)
T PRK05096 83 EWAAFVNNSSADVLKHVMVSTGT--------SDAD-FEKTKQILA------------LSPALNFICIDVANGYSEHFVQF 141 (346)
T ss_pred HHHHHHHhccccccceEEEEecC--------CHHH-HHHHHHHHh------------cCCCCCEEEEECCCCcHHHHHHH
Confidence 3455666655 346678887764 1222 334444432 13689999999999999999999
Q ss_pred HHHHHhhcCCCceEEEe
Q 044801 164 ARALSNFSQQKKVYLAA 180 (238)
Q Consensus 164 i~~LR~~~~~~~~liTa 180 (238)
++.+|+.++. ..+|.-
T Consensus 142 ik~ik~~~P~-~~vIaG 157 (346)
T PRK05096 142 VAKAREAWPD-KTICAG 157 (346)
T ss_pred HHHHHHhCCC-CcEEEe
Confidence 9999998833 344433
No 112
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=42.66 E-value=2.8e+02 Score=25.64 Aligned_cols=22 Identities=18% Similarity=0.395 Sum_probs=18.7
Q ss_pred ccchHHHHHHHHhCCCeEEEEe
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSi 104 (238)
.+.+++....+|+.|-|+++=|
T Consensus 76 i~~lr~la~~vh~~ga~~~~QL 97 (338)
T cd02933 76 VEGWKKVTDAVHAKGGKIFLQL 97 (338)
T ss_pred HHHHHHHHHHHHhcCCeEEEEc
Confidence 4677888889999999998877
No 113
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=42.22 E-value=1.5e+02 Score=27.08 Aligned_cols=79 Identities=9% Similarity=0.114 Sum_probs=49.9
Q ss_pred cchHHHHHHHHhC--CCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccc-cceeeeecCCCC----
Q 044801 84 AGLSNEIKTCQGQ--GIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAV-LDGIDFDIEGGT---- 156 (238)
Q Consensus 84 ~~l~~~I~~~q~~--g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~-lDGiDiD~E~~~---- 156 (238)
....+.|+.++.. ++.|++||-|.+ .++-..+|+. +++++ .|.|+|++--|+
T Consensus 77 ~~~~~~i~~~~~~~~~~pvI~Si~G~~-------~~~~~~~a~~--------------~~~~g~ad~iElN~ScPn~~~~ 135 (310)
T PRK02506 77 DYYLDYVLELQKKGPNKPHFLSVVGLS-------PEETHTILKK--------------IQASDFNGLVELNLSCPNVPGK 135 (310)
T ss_pred HHHHHHHHHHHhhcCCCCEEEEEEeCc-------HHHHHHHHHH--------------HhhcCCCCEEEEECCCCCCCCc
Confidence 4455667666543 688999997733 2233344443 35566 899999998763
Q ss_pred ------chhHHHHHHHHHhhcCCCceEEEecCCC
Q 044801 157 ------NQHWDELARALSNFSQQKKVYLAAAPQC 184 (238)
Q Consensus 157 ------~~~~~~li~~LR~~~~~~~~liTaAP~~ 184 (238)
.+...++++++|+.. ....++=.+|..
T Consensus 136 ~~~g~d~~~~~~i~~~v~~~~-~~Pv~vKlsp~~ 168 (310)
T PRK02506 136 PQIAYDFETTEQILEEVFTYF-TKPLGVKLPPYF 168 (310)
T ss_pred cccccCHHHHHHHHHHHHHhc-CCccEEecCCCC
Confidence 234567778888754 334666677654
No 114
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=41.99 E-value=62 Score=29.13 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=18.6
Q ss_pred ccchHHHHHHHHhCCCeEEEEe
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSi 104 (238)
-++.++.|+.+|++|+||++.+
T Consensus 65 FPd~~~~i~~l~~~G~~~~~~~ 86 (308)
T cd06593 65 FPDPEGMLSRLKEKGFKVCLWI 86 (308)
T ss_pred CCCHHHHHHHHHHCCCeEEEEe
Confidence 3567899999999999999965
No 115
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=41.43 E-value=22 Score=30.24 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=20.1
Q ss_pred cchHHHHHHHHhCCC--eEEEEecCCC
Q 044801 84 AGLSNEIKTCQGQGI--KVLLSIGGAS 108 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~--KVlLSiGG~~ 108 (238)
+.+++.|+.++++|. +|.+-+||..
T Consensus 150 ~~~~~~i~~l~~~~~~~~v~i~vGG~~ 176 (197)
T TIGR02370 150 YGQKDINDKLKEEGYRDSVKFMVGGAP 176 (197)
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEEChh
Confidence 567889999998865 5889999954
No 116
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=41.28 E-value=47 Score=32.67 Aligned_cols=59 Identities=5% Similarity=0.034 Sum_probs=35.4
Q ss_pred cccCCCccEEEEceeeccC--CCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEe
Q 044801 45 ACSSGNYGIVNIAFLTTFG--NSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 45 ~c~~~~~dvV~laF~~~~~--~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
+...-++|.|-|.=+...+ +.++-..++.. -+|.-++..++++.|++||++|+||||-+
T Consensus 36 yl~~LGv~~i~L~Pi~~~~~~~~gY~~~dy~~-vd~~~Gt~~df~~Lv~~ah~~Gi~vilD~ 96 (539)
T TIGR02456 36 YLKWLGVDALWLLPFFQSPLRDDGYDVSDYRA-ILPEFGTIDDFKDFVDEAHARGMRVIIDL 96 (539)
T ss_pred HHHHCCCCEEEECCCcCCCCCCCCCCcccccc-cChhhCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3345678888776222211 22232233321 12333467899999999999999999964
No 117
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.15 E-value=1.7e+02 Score=27.10 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=19.4
Q ss_pred CccchHHHHHHHHhCCCeEEEEe
Q 044801 82 GCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 82 ~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
.-+.+++.+..+|++|-||++=|
T Consensus 76 ~i~~~~~l~~~vh~~G~~i~~QL 98 (353)
T cd04735 76 DIPGLRKLAQAIKSKGAKAILQI 98 (353)
T ss_pred hhHHHHHHHHHHHhCCCeEEEEe
Confidence 34678888999999999998877
No 118
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=41.07 E-value=86 Score=28.79 Aligned_cols=22 Identities=32% Similarity=0.321 Sum_probs=18.6
Q ss_pred ccchHHHHHHHHhCCCeEEEEe
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSi 104 (238)
-++.++.|+.+|++|+||++.+
T Consensus 63 fPdp~~m~~~l~~~g~~~~~~~ 84 (339)
T cd06604 63 FPDPKELIKELHEQGFKVVTII 84 (339)
T ss_pred CCCHHHHHHHHHHCCCEEEEEE
Confidence 3567889999999999999875
No 119
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=40.84 E-value=72 Score=30.51 Aligned_cols=78 Identities=28% Similarity=0.371 Sum_probs=43.4
Q ss_pred ccchHHHHHHHHhCCCeEEEEe---------------cCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccce
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSI---------------GGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDG 147 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSi---------------GG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDG 147 (238)
++..+-.++++|++|+..++.+ |+..+...|.. +..++||+.|.+.. +.|.=.|
T Consensus 103 D~gQrwfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~-d~y~~FA~YLa~Vv----------~~~~~~G 171 (384)
T PF14587_consen 103 DAGQRWFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKP-DNYDAFADYLADVV----------KHYKKWG 171 (384)
T ss_dssp SHHHHHHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-T-T-HHHHHHHHHHHH----------HHHHCTT
T ss_pred CHHHHHHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccCh-hHHHHHHHHHHHHH----------HHHHhcC
Confidence 4566778899999999999987 22222233443 46899999988743 2233346
Q ss_pred eeeecCCC----C--------------chhHHHHHHHHHhhc
Q 044801 148 IDFDIEGG----T--------------NQHWDELARALSNFS 171 (238)
Q Consensus 148 iDiD~E~~----~--------------~~~~~~li~~LR~~~ 171 (238)
|.|++=.| . ++...++|++|+..+
T Consensus 172 I~f~~IsP~NEP~~~W~~~~QEG~~~~~~e~a~vI~~L~~~L 213 (384)
T PF14587_consen 172 INFDYISPFNEPQWNWAGGSQEGCHFTNEEQADVIRALDKAL 213 (384)
T ss_dssp --EEEEE--S-TTS-GG--SS-B----HHHHHHHHHHHHHHH
T ss_pred CccceeCCcCCCCCCCCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence 66664332 1 234568888887766
No 120
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=40.61 E-value=1.7e+02 Score=26.41 Aligned_cols=76 Identities=16% Similarity=0.199 Sum_probs=45.1
Q ss_pred HHHHHHHHhC--CCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCCc-------
Q 044801 87 SNEIKTCQGQ--GIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGTN------- 157 (238)
Q Consensus 87 ~~~I~~~q~~--g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~~------- 157 (238)
.+.++.+++. ++.|++|+-|. .+.++-...|+ .+.+++.|+|||++-.|+.
T Consensus 87 ~~~~~~~~~~~~~~p~i~si~G~------~~~~~~~~~a~--------------~~~~~gad~ielN~sCP~~~~~~~~G 146 (299)
T cd02940 87 LKEIRELKKDFPDKILIASIMCE------YNKEDWTELAK--------------LVEEAGADALELNFSCPHGMPERGMG 146 (299)
T ss_pred HHHHHHHHhhCCCCeEEEEecCC------CCHHHHHHHHH--------------HHHhcCCCEEEEECCCCCCCCCCCCc
Confidence 3445555432 57899999874 12223233333 3456789999999998752
Q ss_pred -------hhHHHHHHHHHhhcCCCceEEEecCC
Q 044801 158 -------QHWDELARALSNFSQQKKVYLAAAPQ 183 (238)
Q Consensus 158 -------~~~~~li~~LR~~~~~~~~liTaAP~ 183 (238)
+...++++++|+.. +....+=..|.
T Consensus 147 ~~l~~~~~~~~~iv~~v~~~~-~~Pv~vKl~~~ 178 (299)
T cd02940 147 AAVGQDPELVEEICRWVREAV-KIPVIAKLTPN 178 (299)
T ss_pred hhhccCHHHHHHHHHHHHHhc-CCCeEEECCCC
Confidence 23567777777654 23455555553
No 121
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=40.40 E-value=60 Score=33.03 Aligned_cols=62 Identities=10% Similarity=0.013 Sum_probs=36.9
Q ss_pred cccccccCCCccEEEEceeeccC-CC--CC-cccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEe
Q 044801 41 SLADACSSGNYGIVNIAFLTTFG-NS--QT-PQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 41 ~L~~~c~~~~~dvV~laF~~~~~-~g--~~-p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
.+..||..-+||+|-|==+..++ ++ ++ +..=++.+ ..+ ++..+|++.|.+||++|+-|||=.
T Consensus 169 ~llpYl~elG~T~IELMPv~e~p~~~sWGYq~~g~yAp~-sry-GtPedfk~fVD~aH~~GIgViLD~ 234 (628)
T COG0296 169 ELLPYLKELGITHIELMPVAEHPGDRSWGYQGTGYYAPT-SRY-GTPEDFKALVDAAHQAGIGVILDW 234 (628)
T ss_pred HHhHHHHHhCCCEEEEcccccCCCCCCCCCCcceecccc-ccC-CCHHHHHHHHHHHHHcCCEEEEEe
Confidence 35567777788888763222222 11 11 11112211 001 356899999999999999999954
No 122
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=40.32 E-value=1.1e+02 Score=28.45 Aligned_cols=60 Identities=18% Similarity=0.111 Sum_probs=39.2
Q ss_pred ccchHHHHHHHHhCCCeEEEEe------c-CCCC---cccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeec
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSI------G-GASG---SYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDI 152 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSi------G-G~~~---~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~ 152 (238)
-++.++.|+.+|++|.|+++.+ | ++.+ -..|.+++.++-+.+.+- .+-+.|+||+=+|.
T Consensus 63 FPdp~~mv~~L~~~G~klv~~i~P~i~~g~~~~~~~~~pDftnp~ar~wW~~~~~-----------~l~~~Gv~~~W~Dm 131 (332)
T cd06601 63 FPNPKEMFDNLHNKGLKCSTNITPVISYGGGLGSPGLYPDLGRPDVREWWGNQYK-----------YLFDIGLEFVWQDM 131 (332)
T ss_pred CCCHHHHHHHHHHCCCeEEEEecCceecCccCCCCceeeCCCCHHHHHHHHHHHH-----------HHHhCCCceeecCC
Confidence 3567889999999999998876 1 1222 234667776776665432 23456888887775
Q ss_pred C
Q 044801 153 E 153 (238)
Q Consensus 153 E 153 (238)
-
T Consensus 132 n 132 (332)
T cd06601 132 T 132 (332)
T ss_pred C
Confidence 3
No 123
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=40.11 E-value=1.6e+02 Score=27.02 Aligned_cols=71 Identities=15% Similarity=0.187 Sum_probs=43.2
Q ss_pred hHHHHHHHHhCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCCc--------
Q 044801 86 LSNEIKTCQGQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGTN-------- 157 (238)
Q Consensus 86 l~~~I~~~q~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~~-------- 157 (238)
+.+.|+..+..++.|++||+|...+ . -++..+.|++.+- -+.. ..|+|+|++--|..
T Consensus 117 ~~~~l~~~~~~~~plivsi~g~~~~-~--~~~~~~d~~~~~~-----------~~~~-~ad~ielN~scP~~~g~~~~~~ 181 (327)
T cd04738 117 VAKRLKKRRPRGGPLGVNIGKNKDT-P--LEDAVEDYVIGVR-----------KLGP-YADYLVVNVSSPNTPGLRDLQG 181 (327)
T ss_pred HHHHHHHhccCCCeEEEEEeCCCCC-c--ccccHHHHHHHHH-----------HHHh-hCCEEEEECCCCCCCccccccC
Confidence 4455555444578899999986422 1 1223455665321 1223 38999999966642
Q ss_pred -hhHHHHHHHHHhhc
Q 044801 158 -QHWDELARALSNFS 171 (238)
Q Consensus 158 -~~~~~li~~LR~~~ 171 (238)
+.+.++++++|+..
T Consensus 182 ~~~~~~iv~av~~~~ 196 (327)
T cd04738 182 KEALRELLTAVKEER 196 (327)
T ss_pred HHHHHHHHHHHHHHH
Confidence 45678888888765
No 124
>PLN02229 alpha-galactosidase
Probab=39.77 E-value=1.5e+02 Score=28.70 Aligned_cols=78 Identities=17% Similarity=0.199 Sum_probs=51.5
Q ss_pred cchHHHHHHHHhCCCeEEEEe-------cCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC
Q 044801 84 AGLSNEIKTCQGQGIKVLLSI-------GGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT 156 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSi-------GG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~ 156 (238)
..++..+++.|++|.|.=|=. +|-.|++.. .+.+++.||+ +|+|-+-+|+=+..
T Consensus 128 ~G~k~ladyiH~~GlKfGIy~d~G~~TC~~~pGS~g~-e~~DA~~fA~------------------WGVDylK~D~C~~~ 188 (427)
T PLN02229 128 SGIKLLADYVHSKGLKLGIYSDAGVFTCQVRPGSLFH-EVDDADIFAS------------------WGVDYLKYDNCYNL 188 (427)
T ss_pred CcHHHHHHHHHHCCCceEEeccCCCcccCCCCCCccH-HHHHHHHHHH------------------cCCCEEEecCCCCC
Confidence 358899999999999975533 222233222 2456777776 68888888876543
Q ss_pred ----chhHHHHHHHHHhhcCCCceEEEecC
Q 044801 157 ----NQHWDELARALSNFSQQKKVYLAAAP 182 (238)
Q Consensus 157 ----~~~~~~li~~LR~~~~~~~~liTaAP 182 (238)
.+.|..|-++|++ .++..+++.-+
T Consensus 189 ~~~~~~~y~~m~~AL~~--tGRpI~~SlC~ 216 (427)
T PLN02229 189 GIKPIERYPPMRDALNA--TGRSIFYSLCE 216 (427)
T ss_pred CcchhHHHHHHHHHHHh--hCCCcEEEecC
Confidence 3457777777776 36777777644
No 125
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=39.47 E-value=1.4e+02 Score=26.68 Aligned_cols=64 Identities=17% Similarity=0.270 Sum_probs=39.9
Q ss_pred HHHHHHH-HhCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCccccccc--ccceeeeecCCCCc------
Q 044801 87 SNEIKTC-QGQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDA--VLDGIDFDIEGGTN------ 157 (238)
Q Consensus 87 ~~~I~~~-q~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~--~lDGiDiD~E~~~~------ 157 (238)
.+.++.. +..+..|++||.|.+ .++-...|+.+ .+. +.|+|||++--|..
T Consensus 79 ~~~~~~~~~~~~~pl~~qi~g~~-------~~~~~~~a~~~--------------~~~~~~~d~ielN~~cP~~~~~g~~ 137 (300)
T TIGR01037 79 LEELKPVREEFPTPLIASVYGSS-------VEEFAEVAEKL--------------EKAPPYVDAYELNLSCPHVKGGGIA 137 (300)
T ss_pred HHHHHHHhccCCCcEEEEeecCC-------HHHHHHHHHHH--------------HhccCccCEEEEECCCCCCCCCccc
Confidence 4444433 345678999998743 33334444432 333 38999999886642
Q ss_pred -----hhHHHHHHHHHhhc
Q 044801 158 -----QHWDELARALSNFS 171 (238)
Q Consensus 158 -----~~~~~li~~LR~~~ 171 (238)
....++++++|+..
T Consensus 138 l~~~~~~~~eiv~~vr~~~ 156 (300)
T TIGR01037 138 IGQDPELSADVVKAVKDKT 156 (300)
T ss_pred cccCHHHHHHHHHHHHHhc
Confidence 34567888888754
No 126
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=39.22 E-value=2.3e+02 Score=25.17 Aligned_cols=45 Identities=20% Similarity=0.336 Sum_probs=34.1
Q ss_pred cchHHHHHHHHhCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHh
Q 044801 84 AGLSNEIKTCQGQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDN 129 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~ 129 (238)
..+.+.|+.+-+.|++=++ +.|-+|....-|.++++.+.+.+.+.
T Consensus 19 ~~~~~~i~~l~~~Gv~Gi~-~~GstGE~~~Ls~~Er~~~~~~~~~~ 63 (285)
T TIGR00674 19 AALEKLIDFQIENGTDAIV-VVGTTGESPTLSHEEHKKVIEFVVDL 63 (285)
T ss_pred HHHHHHHHHHHHcCCCEEE-ECccCcccccCCHHHHHHHHHHHHHH
Confidence 5688999998889998877 55666666566677888888876654
No 127
>PRK15108 biotin synthase; Provisional
Probab=38.82 E-value=1.4e+02 Score=27.79 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=13.0
Q ss_pred ccccccceeeeecCC
Q 044801 140 LGDAVLDGIDFDIEG 154 (238)
Q Consensus 140 ~~~~~lDGiDiD~E~ 154 (238)
+.+.|+|++.+++|.
T Consensus 142 LkeAGld~~n~~leT 156 (345)
T PRK15108 142 LANAGLDYYNHNLDT 156 (345)
T ss_pred HHHcCCCEEeecccc
Confidence 467899999999997
No 128
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=38.62 E-value=97 Score=25.70 Aligned_cols=17 Identities=18% Similarity=0.376 Sum_probs=14.8
Q ss_pred cchHHHHHHHHhCCCeE
Q 044801 84 AGLSNEIKTCQGQGIKV 100 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KV 100 (238)
+.+...++.|++.|++|
T Consensus 38 ~~~~~~~~~a~~aGl~~ 54 (184)
T cd06525 38 SYFNENYNGAKAAGLKV 54 (184)
T ss_pred HhHHHHHHHHHHCCCce
Confidence 66899999999999864
No 129
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=37.73 E-value=45 Score=30.75 Aligned_cols=56 Identities=14% Similarity=0.259 Sum_probs=36.8
Q ss_pred hCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCCc---------------hh
Q 044801 95 GQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGTN---------------QH 159 (238)
Q Consensus 95 ~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~~---------------~~ 159 (238)
.....+++.|+|.. .+.|++. .+.+.++++|+|||+.--|.. .-
T Consensus 52 ~~e~p~~vQl~g~~----------p~~~~~a-----------A~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~ 110 (318)
T TIGR00742 52 PEESPVALQLGGSD----------PNDLAKC-----------AKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADL 110 (318)
T ss_pred CCCCcEEEEEccCC----------HHHHHHH-----------HHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHH
Confidence 35667999999842 3445442 123466899999999877631 23
Q ss_pred HHHHHHHHHhhc
Q 044801 160 WDELARALSNFS 171 (238)
Q Consensus 160 ~~~li~~LR~~~ 171 (238)
..++++++|+..
T Consensus 111 ~~~iv~av~~~~ 122 (318)
T TIGR00742 111 VADCVKAMQEAV 122 (318)
T ss_pred HHHHHHHHHHHh
Confidence 457777788754
No 130
>PF03537 Glyco_hydro_114: Glycoside-hydrolase family GH114; InterPro: IPR004352 Eighty-one archaeal-like genes, ranging in size from 4-20kb, are clustered in 15 regions of the Thermotoga maritima genome []. Conservation of gene order between T. maritima and Archaea in many of these regions suggests that lateral gene transfer may have occurred between thermophilic Eubacteria and Archaea []. One of the T. maritima sequences (hypothetical protein TM1410) shares similarity with Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1477 and with hypothetical protein DR0705 from Deinococcus radiodurans. The sequences are characterised by relatively variable N- and C-terminal domains, and a more conserved central domain. They share no similarity with any other known, functionally or structurally characterised proteins. ; PDB: 2AAM_F.
Probab=36.71 E-value=32 Score=24.75 Aligned_cols=21 Identities=48% Similarity=0.678 Sum_probs=16.0
Q ss_pred HHHHHHHHhCCCeEE--EEecCC
Q 044801 87 SNEIKTCQGQGIKVL--LSIGGA 107 (238)
Q Consensus 87 ~~~I~~~q~~g~KVl--LSiGG~ 107 (238)
.++|+.+|++|+||+ +|+|-+
T Consensus 39 ~~~I~~L~~~G~~vicY~s~Gs~ 61 (74)
T PF03537_consen 39 KEEIARLKAQGKKVICYFSIGSA 61 (74)
T ss_dssp HHHHHHHHHTT-EEEEEEESSEE
T ss_pred HHHHHHHHHCCCEEEEEEeCcee
Confidence 689999999999998 455554
No 131
>PF02569 Pantoate_ligase: Pantoate-beta-alanine ligase; InterPro: IPR003721 D-Pantothenate is synthesized via four enzymes from ketoisovalerate, which is an intermediate of branched-chain amino acid synthesis []. Pantoate-beta-alanine ligase, also know as pantothenate synthase, (6.3.2.1 from EC) catalyzes the formation of pantothenate from pantoate and alanine in the pantothenate biosynthesis pathway [].; GO: 0004592 pantoate-beta-alanine ligase activity, 0015940 pantothenate biosynthetic process; PDB: 3MUE_C 1V8F_B 1UFV_A 2X3F_B 1MOP_A 3COY_B 3IOC_A 1N2E_A 3IVX_A 1N2H_A ....
Probab=36.68 E-value=51 Score=30.12 Aligned_cols=42 Identities=14% Similarity=0.362 Sum_probs=22.6
Q ss_pred ccEEEEc-eeec--cCCCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEE
Q 044801 51 YGIVNIA-FLTT--FGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLS 103 (238)
Q Consensus 51 ~dvV~la-F~~~--~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLS 103 (238)
-|+|++| |+++ |+++ -||.. -...+.+|++.|++.|+-++..
T Consensus 48 ~d~vVVSIFVNP~QF~~~----eD~~~-------YPR~~e~D~~ll~~~gvD~vF~ 92 (280)
T PF02569_consen 48 NDVVVVSIFVNPTQFGPN----EDFDK-------YPRTLERDLELLEKAGVDAVFA 92 (280)
T ss_dssp SSEEEEEE---GGGSSTT----SHTTT-------S---HHHHHHHHHHTT-SEEE-
T ss_pred CCEEEEEECcCcccCCCc----chhhh-------CCCChHHHHHHHhccCCCEEEc
Confidence 3666776 9997 4433 25542 2356899999999988876553
No 132
>PLN03231 putative alpha-galactosidase; Provisional
Probab=36.29 E-value=2.7e+02 Score=26.34 Aligned_cols=43 Identities=16% Similarity=0.164 Sum_probs=30.9
Q ss_pred cccccccceeeeecCCCC----chhHHHHHHHHHhhcCCCceEEEecCC
Q 044801 139 PLGDAVLDGIDFDIEGGT----NQHWDELARALSNFSQQKKVYLAAAPQ 183 (238)
Q Consensus 139 ~~~~~~lDGiDiD~E~~~----~~~~~~li~~LR~~~~~~~~liTaAP~ 183 (238)
.|.+.|+|=+-+|+-++. ...|..|-++|++ .++..++|..|.
T Consensus 171 ~fA~WGVDylK~D~c~~~~~~~~~~y~~m~~AL~~--tGRpIv~Slc~g 217 (357)
T PLN03231 171 QYASWGIDFIKHDCVFGAENPQLDEILTVSKAIRN--SGRPMIYSLSPG 217 (357)
T ss_pred HHHHhCCCEEeecccCCCCcccHHHHHHHHHHHHH--hCCCeEEEecCC
Confidence 347789999999976543 2457777777776 467888888763
No 133
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=36.24 E-value=1.5e+02 Score=24.23 Aligned_cols=106 Identities=17% Similarity=0.253 Sum_probs=50.9
Q ss_pred cchHHHHHHHHhCCCeEEEEecCCCCcccC-CCHHHHHHHHHHHHHhhcCCCCCcccccccccce-eeeecCCC-----C
Q 044801 84 AGLSNEIKTCQGQGIKVLLSIGGASGSYSL-SSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDG-IDFDIEGG-----T 156 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSiGG~~~~~~~-~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDG-iDiD~E~~-----~ 156 (238)
+.+...++.|++.|++| |. .++.- .+.+++++=|+..++... +....|- +=||+|.. +
T Consensus 36 ~~~~~n~~~a~~aGl~~----G~--Yhf~~~~~~~~a~~qA~~f~~~~~---------~~~~~~~~~~lD~E~~~~~~~~ 100 (181)
T PF01183_consen 36 PYFESNIKNAKAAGLPV----GA--YHFARATNSSDAEAQADYFLNQVK---------GGDPGDLPPALDVEDDKSNNPS 100 (181)
T ss_dssp TTHHHHHHHHHHTTSEE----EE--EEE--TTTHCHHHHHHHHHHHCTH---------TSSTSCS-EEEEE-S-GGCCSS
T ss_pred chHHHHHHHHHHcCCeE----EE--EEEeccCCcccHHHHHHHHHHHhc---------ccCCCcceEEEeccccccCCCC
Confidence 56899999999999986 32 22221 234455555555554320 1111111 34788842 2
Q ss_pred c----hhHHHHHHHHHhhcCCCceEEEecCCCCCCCcchhhhhc---cCcccEEEeeecCCC
Q 044801 157 N----QHWDELARALSNFSQQKKVYLAAAPQCPYPDAWLGGALG---TGLFDYVWVQFYNNP 211 (238)
Q Consensus 157 ~----~~~~~li~~LR~~~~~~~~liTaAP~~~~~d~~~~~~~~---~~~~D~i~vqfYnn~ 211 (238)
. ....+|+++++++. |.+-+|=+.+ ..+...+. ...-.-++|--|++.
T Consensus 101 ~~~~~~~~~~f~~~~~~~~-G~~~~iY~~~------~~~~~~~~~~~~~~~~~lWiA~Y~~~ 155 (181)
T PF01183_consen 101 KSDNTAWVKAFLDEVEKAA-GYKPGIYTSK------SFWNNYLGSSSIFSDYPLWIARYGSN 155 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TSEEEEEEEH------HHHHHHTSCHCHTTTSEEEEE-TSSS
T ss_pred HHHHHHHHHHHHHHHHHHh-CCceeEeecH------HHHHhcccchhccCCCCEEEecCCCC
Confidence 2 23456666675544 4333331111 12222211 112347888888877
No 134
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=34.93 E-value=1.3e+02 Score=25.49 Aligned_cols=17 Identities=24% Similarity=0.499 Sum_probs=15.3
Q ss_pred cchHHHHHHHHhCCCeE
Q 044801 84 AGLSNEIKTCQGQGIKV 100 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KV 100 (238)
+.+.+.++.|++.|++|
T Consensus 46 ~~f~~n~~~A~~~Gl~v 62 (190)
T cd06419 46 DNFLSNFSRAQGTGLSV 62 (190)
T ss_pred hhHHHHHHHHHHCCCCE
Confidence 67899999999999987
No 135
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=34.73 E-value=1.3e+02 Score=27.38 Aligned_cols=56 Identities=11% Similarity=0.109 Sum_probs=36.0
Q ss_pred hCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC---------------chh
Q 044801 95 GQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT---------------NQH 159 (238)
Q Consensus 95 ~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~---------------~~~ 159 (238)
..+..++++|+|.. .+.|++.. +.+.++|+|||||+.-.|. ...
T Consensus 60 ~~~~p~i~ql~g~~----------~~~~~~aa-----------~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~ 118 (319)
T TIGR00737 60 EDETPISVQLFGSD----------PDTMAEAA-----------KINEELGADIIDINMGCPVPKITKKGAGSALLRDPDL 118 (319)
T ss_pred CccceEEEEEeCCC----------HHHHHHHH-----------HHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHH
Confidence 45788999999943 33444421 2346789999999876552 122
Q ss_pred HHHHHHHHHhhc
Q 044801 160 WDELARALSNFS 171 (238)
Q Consensus 160 ~~~li~~LR~~~ 171 (238)
..++++++|+..
T Consensus 119 ~~ei~~~vr~~~ 130 (319)
T TIGR00737 119 IGKIVKAVVDAV 130 (319)
T ss_pred HHHHHHHHHhhc
Confidence 346677777654
No 136
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=34.03 E-value=3.1e+02 Score=26.14 Aligned_cols=81 Identities=11% Similarity=0.168 Sum_probs=49.3
Q ss_pred cchHHHHHHHHh--CCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCCc----
Q 044801 84 AGLSNEIKTCQG--QGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGTN---- 157 (238)
Q Consensus 84 ~~l~~~I~~~q~--~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~~---- 157 (238)
....+.|+.+++ +.+.|+.||.|.. +.++=.++|. .+.+.|.|+|.|++-.|+.
T Consensus 98 ~~~l~~i~~~k~~~~~~pvIaSi~~~~------s~~~~~~~a~--------------~~e~~GaD~iELNiSCPn~~~~r 157 (385)
T PLN02495 98 ETMLAEFKQLKEEYPDRILIASIMEEY------NKDAWEEIIE--------------RVEETGVDALEINFSCPHGMPER 157 (385)
T ss_pred HHHHHHHHHHHhhCCCCcEEEEccCCC------CHHHHHHHHH--------------HHHhcCCCEEEEECCCCCCCCcC
Confidence 344556777753 3679999996521 2333334444 3467899999999976542
Q ss_pred ----------hhHHHHHHHHHhhcCCCceEEEecCCCC
Q 044801 158 ----------QHWDELARALSNFSQQKKVYLAAAPQCP 185 (238)
Q Consensus 158 ----------~~~~~li~~LR~~~~~~~~liTaAP~~~ 185 (238)
+...++++++|+.. ....++=.+|...
T Consensus 158 ~~g~~~gq~~e~~~~i~~~Vk~~~-~iPv~vKLsPn~t 194 (385)
T PLN02495 158 KMGAAVGQDCDLLEEVCGWINAKA-TVPVWAKMTPNIT 194 (385)
T ss_pred ccchhhccCHHHHHHHHHHHHHhh-cCceEEEeCCChh
Confidence 12334556667654 3457777777654
No 137
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=33.37 E-value=3e+02 Score=24.76 Aligned_cols=78 Identities=13% Similarity=0.104 Sum_probs=47.9
Q ss_pred cchHHHHHHHHh----CCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCccccccc---ccceeeeecCCCC
Q 044801 84 AGLSNEIKTCQG----QGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDA---VLDGIDFDIEGGT 156 (238)
Q Consensus 84 ~~l~~~I~~~q~----~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~---~lDGiDiD~E~~~ 156 (238)
....+.|+..++ .++.|++||+|. .++-.+.+.. +.+. +.|+|||++--|.
T Consensus 74 ~~~~~~i~~~~~~~~~~~~pvivsi~g~--------~~~~~~~~~~--------------~~~~~~~~ad~ielN~sCPn 131 (294)
T cd04741 74 DYYLEYIRTISDGLPGSAKPFFISVTGS--------AEDIAAMYKK--------------IAAHQKQFPLAMELNLSCPN 131 (294)
T ss_pred HHHHHHHHHHhhhccccCCeEEEECCCC--------HHHHHHHHHH--------------HHhhccccccEEEEECCCCC
Confidence 344556665443 478899999873 1222333332 2333 6899999998764
Q ss_pred ----------chhHHHHHHHHHhhcCCCceEEEecCCC
Q 044801 157 ----------NQHWDELARALSNFSQQKKVYLAAAPQC 184 (238)
Q Consensus 157 ----------~~~~~~li~~LR~~~~~~~~liTaAP~~ 184 (238)
.+...++++++|+.. ....++=.+|..
T Consensus 132 ~~~~~~~~~~~~~~~~i~~~v~~~~-~iPv~vKl~p~~ 168 (294)
T cd04741 132 VPGKPPPAYDFDATLEYLTAVKAAY-SIPVGVKTPPYT 168 (294)
T ss_pred CCCcccccCCHHHHHHHHHHHHHhc-CCCEEEEeCCCC
Confidence 245667788888764 344666666644
No 138
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=32.50 E-value=3.1e+02 Score=25.89 Aligned_cols=76 Identities=16% Similarity=0.207 Sum_probs=45.1
Q ss_pred HHHHHHHh--CCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC---------
Q 044801 88 NEIKTCQG--QGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT--------- 156 (238)
Q Consensus 88 ~~I~~~q~--~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~--------- 156 (238)
+.++.+++ ..+.|++||.|. .+.++-.++|. .+++.+.|+|||++-.|.
T Consensus 88 ~~~~~~~~~~~~~p~i~si~g~------~~~~~~~~~a~--------------~~~~~g~d~ielN~scP~~~~~~~~g~ 147 (420)
T PRK08318 88 REIRRVKRDYPDRALIASIMVE------CNEEEWKEIAP--------------LVEETGADGIELNFGCPHGMSERGMGS 147 (420)
T ss_pred HHHHHHHhhCCCceEEEEeccC------CCHHHHHHHHH--------------HHHhcCCCEEEEeCCCCCCccccCCcc
Confidence 34444432 246789999874 12233334443 346678999999988765
Q ss_pred -----chhHHHHHHHHHhhcCCCceEEEecCCC
Q 044801 157 -----NQHWDELARALSNFSQQKKVYLAAAPQC 184 (238)
Q Consensus 157 -----~~~~~~li~~LR~~~~~~~~liTaAP~~ 184 (238)
.+...++++++|+.. .....+=.+|..
T Consensus 148 ~~~~~~~~~~~i~~~v~~~~-~~Pv~vKl~p~~ 179 (420)
T PRK08318 148 AVGQVPELVEMYTRWVKRGS-RLPVIVKLTPNI 179 (420)
T ss_pred cccCCHHHHHHHHHHHHhcc-CCcEEEEcCCCc
Confidence 124567777777653 334555555543
No 139
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=32.42 E-value=2.4e+02 Score=25.72 Aligned_cols=88 Identities=19% Similarity=0.256 Sum_probs=51.2
Q ss_pred ccchHHHHHHHHhCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccc-cceeeeecCCCC-----
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAV-LDGIDFDIEGGT----- 156 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~-lDGiDiD~E~~~----- 156 (238)
...+.-.|+.+++.|..|+=++=-+......-+.+.-+.+.+.|.+. ++..+ +|||=|++...-
T Consensus 44 ~~~~~g~~~~a~~~g~e~vp~~~a~A~P~G~v~~~aye~l~~eil~~----------l~~agp~Dgv~L~LHGAmv~e~~ 113 (292)
T PF07364_consen 44 NTEIGGFLDAAEAQGWEVVPLLWAAAEPGGPVTREAYERLRDEILDR----------LRAAGPLDGVLLDLHGAMVAEGY 113 (292)
T ss_dssp -SHHHHHHHHHHHTT-EEEEEEEEEE-SEE-B-HHHHHHHHHHHHHH----------HHHS---SEEEEEE-S---BSS-
T ss_pred CcchHHHHHHHHHCCCEEEeeEeeeecCCCcccHHHHHHHHHHHHHH----------HHhcCCcCEEEEeccCcEeecCC
Confidence 35577788889999998887774433222233344444555544432 34444 999999988642
Q ss_pred chhHHHHHHHHHhhcCCCceEEEec
Q 044801 157 NQHWDELARALSNFSQQKKVYLAAA 181 (238)
Q Consensus 157 ~~~~~~li~~LR~~~~~~~~liTaA 181 (238)
...=.+|++++|+.. |++..|.++
T Consensus 114 ~D~EG~Ll~rvR~~v-Gp~vpI~~t 137 (292)
T PF07364_consen 114 DDGEGDLLRRVRAIV-GPDVPIAAT 137 (292)
T ss_dssp SSHHHHHHHHHHHHH-TTTSEEEEE
T ss_pred CCchHHHHHHHHHHh-CCCCeEEEE
Confidence 223357999999987 566666665
No 140
>PLN00196 alpha-amylase; Provisional
Probab=31.54 E-value=35 Score=32.87 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.1
Q ss_pred CCccchHHHHHHHHhCCCeEEEEe
Q 044801 81 NGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 81 ~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
++..++++.|++||++|+||++=+
T Consensus 89 Gt~~elk~Lv~~aH~~GIkVilDv 112 (428)
T PLN00196 89 GNEAQLKSLIEAFHGKGVQVIADI 112 (428)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEE
Confidence 356789999999999999999865
No 141
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=30.99 E-value=1.5e+02 Score=26.61 Aligned_cols=46 Identities=15% Similarity=0.229 Sum_probs=34.6
Q ss_pred cchHHHHHHHHhCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhh
Q 044801 84 AGLSNEIKTCQGQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNF 130 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f 130 (238)
..+++.|+.+-+.|++-++-. |-+|....-|.++++++++.+....
T Consensus 21 ~~l~~l~~~l~~~Gv~gi~v~-GstGE~~~Ls~eEr~~l~~~~~~~~ 66 (289)
T cd00951 21 DAYRAHVEWLLSYGAAALFAA-GGTGEFFSLTPDEYAQVVRAAVEET 66 (289)
T ss_pred HHHHHHHHHHHHcCCCEEEEC-cCCcCcccCCHHHHHHHHHHHHHHh
Confidence 458889999888999988854 5466655556778899988776643
No 142
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.66 E-value=47 Score=32.95 Aligned_cols=44 Identities=16% Similarity=0.385 Sum_probs=27.5
Q ss_pred cccccccceeeeecCCCCchhHHHHHHHHHhhcCCCceEEEecCCC
Q 044801 139 PLGDAVLDGIDFDIEGGTNQHWDELARALSNFSQQKKVYLAAAPQC 184 (238)
Q Consensus 139 ~~~~~~lDGiDiD~E~~~~~~~~~li~~LR~~~~~~~~liTaAP~~ 184 (238)
.+++-|+|||.|- ++.....|.+|-+.++.++ .++++|+.+.--
T Consensus 237 VIGedGv~GI~Ls-~~~~G~~fk~fQ~~Ik~l~-kqGVlLav~SKN 280 (574)
T COG3882 237 VIGEDGVDGIRLS-NSAEGEAFKTFQNFIKGLK-KQGVLLAVCSKN 280 (574)
T ss_pred ccccccccceeec-CCCCchhHHHHHHHHHHHH-hccEEEEEecCC
Confidence 5678899999998 5444444444444333333 367888887543
No 143
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=30.35 E-value=1.3e+02 Score=25.05 Aligned_cols=17 Identities=6% Similarity=0.245 Sum_probs=14.9
Q ss_pred cchHHHHHHHHhCCCeE
Q 044801 84 AGLSNEIKTCQGQGIKV 100 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KV 100 (238)
+.+.+.++.|++.|++|
T Consensus 41 ~~~~~~~~~a~~~Gl~v 57 (191)
T cd06413 41 KRFAENWRGARAAGLPR 57 (191)
T ss_pred HHHHHHHHHHHHcCCce
Confidence 67899999999999865
No 144
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=30.08 E-value=94 Score=26.72 Aligned_cols=63 Identities=24% Similarity=0.196 Sum_probs=43.0
Q ss_pred ccccccceeeeecCCCCchhHHHHHHHHHhhcCCCceEEEecCCCCCCCcchhhhhccCcccEEEeeecCC
Q 044801 140 LGDAVLDGIDFDIEGGTNQHWDELARALSNFSQQKKVYLAAAPQCPYPDAWLGGALGTGLFDYVWVQFYNN 210 (238)
Q Consensus 140 ~~~~~lDGiDiD~E~~~~~~~~~li~~LR~~~~~~~~liTaAP~~~~~d~~~~~~~~~~~~D~i~vqfYnn 210 (238)
+.+.|-|-|-|-+|.. ....++++.+|+. +.+.=|+.-|.+|.. .+...+ ..+|+|.||.=+=
T Consensus 76 ~~~~g~~~i~~H~E~~--~~~~~~i~~ik~~--g~k~GialnP~T~~~--~~~~~l--~~vD~VlvMsV~P 138 (201)
T PF00834_consen 76 FAEAGADYITFHAEAT--EDPKETIKYIKEA--GIKAGIALNPETPVE--ELEPYL--DQVDMVLVMSVEP 138 (201)
T ss_dssp HHHHT-SEEEEEGGGT--TTHHHHHHHHHHT--TSEEEEEE-TTS-GG--GGTTTG--CCSSEEEEESS-T
T ss_pred HHhcCCCEEEEcccch--hCHHHHHHHHHHh--CCCEEEEEECCCCch--HHHHHh--hhcCEEEEEEecC
Confidence 3567899999999943 4667889999985 455668888887642 244444 5799999999753
No 145
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=29.95 E-value=58 Score=35.72 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=23.0
Q ss_pred cchHHHHHHHHhCCCeEEEEecCCCCc
Q 044801 84 AGLSNEIKTCQGQGIKVLLSIGGASGS 110 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSiGG~~~~ 110 (238)
..+...|+.+|.+|.+|-+-+||+.-+
T Consensus 817 ~~m~~~i~~L~~~g~~v~v~vGGa~~s 843 (1229)
T PRK09490 817 DEMVHVAKEMERQGFTIPLLIGGATTS 843 (1229)
T ss_pred HHHHHHHHHHHhcCCCCeEEEEeeccc
Confidence 567889999999999999999998643
No 146
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=29.60 E-value=2.7e+02 Score=26.28 Aligned_cols=67 Identities=13% Similarity=0.129 Sum_probs=45.3
Q ss_pred chHHHHHHH-HhCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCCchhHHHH
Q 044801 85 GLSNEIKTC-QGQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGTNQHWDEL 163 (238)
Q Consensus 85 ~l~~~I~~~-q~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~~~~~~~l 163 (238)
+..+.++.. +..+..+++|+|=. ++ -...++.|.. ...++|-|=||.-++...+..++
T Consensus 82 ~~~~~v~~~~~~~~~~~~vsvG~~--------~~-d~er~~~L~~------------a~~~~d~iviD~AhGhs~~~i~~ 140 (343)
T TIGR01305 82 EWKAFATNSSPDCLQNVAVSSGSS--------DN-DLEKMTSILE------------AVPQLKFICLDVANGYSEHFVEF 140 (343)
T ss_pred HHHHHHHhhcccccceEEEEeccC--------HH-HHHHHHHHHh------------cCCCCCEEEEECCCCcHHHHHHH
Confidence 345566553 34567788887642 21 2334444432 12479999999999999999999
Q ss_pred HHHHHhhcC
Q 044801 164 ARALSNFSQ 172 (238)
Q Consensus 164 i~~LR~~~~ 172 (238)
++.||+.++
T Consensus 141 ik~ir~~~p 149 (343)
T TIGR01305 141 VKLVREAFP 149 (343)
T ss_pred HHHHHhhCC
Confidence 999999874
No 147
>PLN02808 alpha-galactosidase
Probab=29.06 E-value=2.6e+02 Score=26.69 Aligned_cols=78 Identities=19% Similarity=0.368 Sum_probs=49.4
Q ss_pred cchHHHHHHHHhCCCeEEEEec-CC-------CCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCC
Q 044801 84 AGLSNEIKTCQGQGIKVLLSIG-GA-------SGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGG 155 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSiG-G~-------~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~ 155 (238)
..++...+++|++|.|.=|=.. |. .|++... +.+++.||+ +|+|-+-+|+=+.
T Consensus 97 ~G~~~lad~iH~~GlkfGiy~~~G~~tC~~~~pGs~~~e-~~DA~~fA~------------------WGvDylK~D~C~~ 157 (386)
T PLN02808 97 SGIKALADYVHSKGLKLGIYSDAGTLTCSKTMPGSLGHE-EQDAKTFAS------------------WGIDYLKYDNCEN 157 (386)
T ss_pred ccHHHHHHHHHHCCCceEEEecCCccccCCCCCcchHHH-HHHHHHHHH------------------hCCCEEeecCcCC
Confidence 4589999999999998755432 11 1111111 235666665 6888888887654
Q ss_pred C----chhHHHHHHHHHhhcCCCceEEEecC
Q 044801 156 T----NQHWDELARALSNFSQQKKVYLAAAP 182 (238)
Q Consensus 156 ~----~~~~~~li~~LR~~~~~~~~liTaAP 182 (238)
. ...|..|-++|++ .++..+++.-+
T Consensus 158 ~~~~~~~~y~~m~~AL~~--tGRpi~~slc~ 186 (386)
T PLN02808 158 TGTSPQERYPKMSKALLN--SGRPIFFSLCE 186 (386)
T ss_pred CCccHHHHHHHHHHHHHH--hCCCeEEEecC
Confidence 3 2457778888776 36677777643
No 148
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=28.60 E-value=1.2e+02 Score=32.15 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=37.4
Q ss_pred cCCCccEEEEceeeccCCC---CCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEe
Q 044801 47 SSGNYGIVNIAFLTTFGNS---QTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 47 ~~~~~dvV~laF~~~~~~g---~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
..-++++|-++=+.....| ++-..|+. ..+|.-++..++++.|++||++|+||||-|
T Consensus 30 ~~LGis~IyLsPi~~a~~gs~hGYdv~D~~-~idp~lGt~e~f~~Lv~aah~~Gi~VIlDi 89 (879)
T PRK14511 30 ADLGVSHLYLSPILAARPGSTHGYDVVDHT-RINPELGGEEGLRRLAAALRAHGMGLILDI 89 (879)
T ss_pred HHcCCCEEEECcCccCCCCCCCCCCcCCCC-CcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4567888888733222112 23223433 234444567899999999999999999987
No 149
>cd06524 GH25_YegX-like YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.
Probab=28.60 E-value=1.9e+02 Score=24.10 Aligned_cols=17 Identities=12% Similarity=0.198 Sum_probs=14.7
Q ss_pred cchHHHHHHHHhCCCeE
Q 044801 84 AGLSNEIKTCQGQGIKV 100 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KV 100 (238)
+.+.+.++.|++.|++|
T Consensus 42 ~~~~~n~~~a~~aGl~~ 58 (194)
T cd06524 42 PDFPTNWEGAKEAGIIR 58 (194)
T ss_pred hHHHHHHHHHHHcCCce
Confidence 66899999999999864
No 150
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=27.65 E-value=1.8e+02 Score=30.29 Aligned_cols=64 Identities=22% Similarity=0.173 Sum_probs=45.5
Q ss_pred CccchHHHHHHHHhCCCeEEEEe----------------cCC------------------CCcccCCCHHHHHHHHHHHH
Q 044801 82 GCAGLSNEIKTCQGQGIKVLLSI----------------GGA------------------SGSYSLSSADDARQVAQYLW 127 (238)
Q Consensus 82 ~~~~l~~~I~~~q~~g~KVlLSi----------------GG~------------------~~~~~~~s~~~~~~fa~~l~ 127 (238)
.-|+.++.|+.++++|+|+++.| -|. ++-..|++++.++.+++...
T Consensus 319 ~FP~pk~mi~~l~~~Gikl~~~i~P~i~~d~~~~~e~~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww~~~~~ 398 (772)
T COG1501 319 RFPDPKQMIAELHEKGIKLIVIINPYIKQDSPLFKEAIEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWWASDKK 398 (772)
T ss_pred cCCCHHHHHHHHHhcCceEEEEeccccccCCchHHHHHHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHHHHHHH
Confidence 34667799999999999999999 111 12235678888888885322
Q ss_pred HhhcCCCCCcccccccccceeeeecCCC
Q 044801 128 DNFLGGQSSSRPLGDAVLDGIDFDIEGG 155 (238)
Q Consensus 128 ~~f~~g~s~~r~~~~~~lDGiDiD~E~~ 155 (238)
..+-+.|+|||=.|.-.+
T Consensus 399 ----------~~l~d~Gv~g~W~D~nEp 416 (772)
T COG1501 399 ----------KNLLDLGVDGFWNDMNEP 416 (772)
T ss_pred ----------hHHHhcCccEEEccCCCC
Confidence 234678999998887654
No 151
>PLN02692 alpha-galactosidase
Probab=27.48 E-value=2.6e+02 Score=26.96 Aligned_cols=78 Identities=17% Similarity=0.299 Sum_probs=48.8
Q ss_pred cchHHHHHHHHhCCCeEEEEecCC--CCcccC-CC----HHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCC
Q 044801 84 AGLSNEIKTCQGQGIKVLLSIGGA--SGSYSL-SS----ADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGT 156 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSiGG~--~~~~~~-~s----~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~ 156 (238)
..++....++|++|.|.=|=.--+ +..... .+ +.+++.||+ +|+|-+-+|+=+..
T Consensus 121 ~G~k~ladyiH~~GLKfGIy~d~G~~tC~~~~pGS~g~e~~DA~~fA~------------------WGvDylK~D~C~~~ 182 (412)
T PLN02692 121 SGIKALADYVHSKGLKLGIYSDAGYFTCSKTMPGSLGHEEQDAKTFAS------------------WGIDYLKYDNCNND 182 (412)
T ss_pred CcHHHHHHHHHHCCCceEEEecCCccccCCCCCCchHHHHHHHHHHHh------------------cCCCEEeccccCCC
Confidence 458999999999999875533111 111111 11 234555554 68888888876542
Q ss_pred ----chhHHHHHHHHHhhcCCCceEEEec
Q 044801 157 ----NQHWDELARALSNFSQQKKVYLAAA 181 (238)
Q Consensus 157 ----~~~~~~li~~LR~~~~~~~~liTaA 181 (238)
...|..|.++|++ .++..+++.-
T Consensus 183 ~~~~~~~y~~m~~AL~~--tGRpI~~SlC 209 (412)
T PLN02692 183 GSKPTVRYPVMTRALMK--AGRPIFFSLC 209 (412)
T ss_pred CcchhHHHHHHHHHHHH--hCCCeEEEec
Confidence 2467788888876 3677777764
No 152
>PRK10658 putative alpha-glucosidase; Provisional
Probab=27.17 E-value=1.8e+02 Score=29.70 Aligned_cols=22 Identities=18% Similarity=0.310 Sum_probs=19.1
Q ss_pred ccchHHHHHHHHhCCCeEEEEe
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSi 104 (238)
-++.+..|+.+|++|+||++.|
T Consensus 324 FPdp~~mi~~L~~~G~k~~~~i 345 (665)
T PRK10658 324 FPDPEGMLKRLKAKGLKICVWI 345 (665)
T ss_pred CCCHHHHHHHHHHCCCEEEEec
Confidence 3567889999999999999987
No 153
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=26.85 E-value=68 Score=22.72 Aligned_cols=24 Identities=17% Similarity=0.337 Sum_probs=20.9
Q ss_pred chHHHHHHHHhCCCeEEEEecCCC
Q 044801 85 GLSNEIKTCQGQGIKVLLSIGGAS 108 (238)
Q Consensus 85 ~l~~~I~~~q~~g~KVlLSiGG~~ 108 (238)
.+.+.++.+++.|+.|||-+|+..
T Consensus 5 d~~~al~~A~~~~kpvlv~f~a~w 28 (82)
T PF13899_consen 5 DYEEALAEAKKEGKPVLVDFGADW 28 (82)
T ss_dssp SHHHHHHHHHHHTSEEEEEEETTT
T ss_pred hHHHHHHHHHHcCCCEEEEEECCC
Confidence 578889999999999999998754
No 154
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=25.75 E-value=2.3e+02 Score=23.73 Aligned_cols=17 Identities=12% Similarity=0.182 Sum_probs=14.8
Q ss_pred cchHHHHHHHHhCCCeE
Q 044801 84 AGLSNEIKTCQGQGIKV 100 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KV 100 (238)
+.+.+.++.|++.|++|
T Consensus 38 ~~~~~n~~~A~~aGl~v 54 (196)
T cd06415 38 PKASAQVSSAIANGKMT 54 (196)
T ss_pred ccHHHHHHHHHHCCCee
Confidence 56899999999999865
No 155
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=25.54 E-value=2e+02 Score=24.39 Aligned_cols=82 Identities=20% Similarity=0.233 Sum_probs=39.0
Q ss_pred CCCeEEEEecCCCCc-------ccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccc---eeeeecCCCCchhHHHHHH
Q 044801 96 QGIKVLLSIGGASGS-------YSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLD---GIDFDIEGGTNQHWDELAR 165 (238)
Q Consensus 96 ~g~KVlLSiGG~~~~-------~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lD---GiDiD~E~~~~~~~~~li~ 165 (238)
+|+|||++-||-.-. .+.+|.......|+.++.+ |..+.-.-+...++ |+.+ . ......+|.+
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~---Ga~V~li~g~~~~~~p~~~~~--i--~v~sa~em~~ 74 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARR---GAEVTLIHGPSSLPPPPGVKV--I--RVESAEEMLE 74 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHT---T-EEEEEE-TTS----TTEEE--E--E-SSHHHHHH
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHC---CCEEEEEecCccccccccceE--E--Eecchhhhhh
Confidence 599999999995321 2457777777888876542 21110000110111 1111 0 1235677888
Q ss_pred HHHhhcCCCceEEEecCCC
Q 044801 166 ALSNFSQQKKVYLAAAPQC 184 (238)
Q Consensus 166 ~LR~~~~~~~~liTaAP~~ 184 (238)
++++.++..+.+|.+|..+
T Consensus 75 ~~~~~~~~~Di~I~aAAVs 93 (185)
T PF04127_consen 75 AVKELLPSADIIIMAAAVS 93 (185)
T ss_dssp HHHHHGGGGSEEEE-SB--
T ss_pred hhccccCcceeEEEecchh
Confidence 8887775456666666444
No 156
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=25.35 E-value=2.1e+02 Score=23.80 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.1
Q ss_pred ccchHHHHHHHHhCCCeE
Q 044801 83 CAGLSNEIKTCQGQGIKV 100 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KV 100 (238)
.+.+.+.++.+++.|++|
T Consensus 41 D~~~~~~~~~A~~aGl~~ 58 (191)
T cd06414 41 DKYFEENIKGAKAAGIPV 58 (191)
T ss_pred CHHHHHHHHHHHHCCCce
Confidence 367899999999999764
No 157
>PRK08187 pyruvate kinase; Validated
Probab=25.32 E-value=3.3e+02 Score=26.91 Aligned_cols=54 Identities=7% Similarity=0.206 Sum_probs=39.2
Q ss_pred CCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCCCchhHHHHHHHHHhhc
Q 044801 96 QGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGGTNQHWDELARALSNFS 171 (238)
Q Consensus 96 ~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~~~~~~~~li~~LR~~~ 171 (238)
+..||+.+|||.... + ..+...|. +.|.|.+-|++-|++.+.+..+++.+|+.-
T Consensus 133 r~tkIv~Tlg~pa~~----~----~e~i~~Li--------------~aGmdvaRiN~SHg~~e~~~~~i~~vR~a~ 186 (493)
T PRK08187 133 RRTRIMVTLPSEAAD----D----PDFVLRLA--------------ERGMDCARINCAHDDPAAWQAMIGHLRQAE 186 (493)
T ss_pred CCceEEEECCCCccC----C----HHHHHHHH--------------HCCCCEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 457999999985321 1 22333332 479999999999999888888998888753
No 158
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=25.25 E-value=3.2e+02 Score=21.09 Aligned_cols=67 Identities=15% Similarity=0.251 Sum_probs=33.4
Q ss_pred HHHHHHHHhCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecC--CCCchhHHHHH
Q 044801 87 SNEIKTCQGQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIE--GGTNQHWDELA 164 (238)
Q Consensus 87 ~~~I~~~q~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E--~~~~~~~~~li 164 (238)
.++|+.+++.|.|.+|-+-.-+-....++.++-++-|+ +.|+.=+.|=+. ....+....|.
T Consensus 17 ~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~-----------------~~Gl~y~~iPv~~~~~~~~~v~~f~ 79 (110)
T PF04273_consen 17 PEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAE-----------------ALGLQYVHIPVDGGAITEEDVEAFA 79 (110)
T ss_dssp HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHH-----------------HCT-EEEE----TTT--HHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHH-----------------HcCCeEEEeecCCCCCCHHHHHHHH
Confidence 67999999999999999975433222333333333333 356666654433 33345666676
Q ss_pred HHHHhh
Q 044801 165 RALSNF 170 (238)
Q Consensus 165 ~~LR~~ 170 (238)
+.|.+.
T Consensus 80 ~~l~~~ 85 (110)
T PF04273_consen 80 DALESL 85 (110)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 666664
No 159
>PLN02361 alpha-amylase
Probab=25.05 E-value=61 Score=30.99 Aligned_cols=24 Identities=8% Similarity=0.151 Sum_probs=21.3
Q ss_pred CCccchHHHHHHHHhCCCeEEEEe
Q 044801 81 NGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 81 ~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
++..+|++.|++||++|+||++=+
T Consensus 73 Gt~~el~~li~~~h~~gi~vi~D~ 96 (401)
T PLN02361 73 GSEHLLKSLLRKMKQYNVRAMADI 96 (401)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEE
Confidence 356789999999999999999965
No 160
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=22.94 E-value=1.1e+02 Score=28.14 Aligned_cols=44 Identities=14% Similarity=0.346 Sum_probs=28.1
Q ss_pred ccEEEEc-eeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEE
Q 044801 51 YGIVNIA-FLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLS 103 (238)
Q Consensus 51 ~dvV~la-F~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLS 103 (238)
-|+|++| |+++.--| |.-||.. -.-.+..|++.|++.|+-++..
T Consensus 48 ~d~VVVSIFVNP~QFg--~~EDl~~-------YPR~l~~D~~~le~~gvd~vF~ 92 (285)
T COG0414 48 NDVVVVSIFVNPLQFG--PNEDLDR-------YPRTLERDLELLEKEGVDIVFA 92 (285)
T ss_pred CCeEEEEEEeChhhcC--Cchhhhh-------CCCCHHHHHHHHHhcCCcEEeC
Confidence 4666666 99984222 2235543 1256889999999888876654
No 161
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=22.87 E-value=1.5e+02 Score=30.88 Aligned_cols=59 Identities=14% Similarity=0.187 Sum_probs=34.0
Q ss_pred cccCCCccEEEEceeeccC---CCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEe
Q 044801 45 ACSSGNYGIVNIAFLTTFG---NSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 45 ~c~~~~~dvV~laF~~~~~---~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
+...-+||+|-|.=+..++ .-++-..++-.. .+.-++..++++.|++||++|++|||=+
T Consensus 259 ylk~LG~t~I~LmPi~e~~~~~~wGY~~~~~fa~-~~~~Gtp~dlk~LVd~aH~~GI~VilDv 320 (758)
T PLN02447 259 RIKALGYNAVQLMAIQEHAYYGSFGYHVTNFFAV-SSRSGTPEDLKYLIDKAHSLGLRVLMDV 320 (758)
T ss_pred HHHHcCCCEEEECCccccCCCCCCCcCcccCccc-ccccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3355678887765222211 111211222211 1222355789999999999999999975
No 162
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=22.82 E-value=1.8e+02 Score=30.57 Aligned_cols=60 Identities=13% Similarity=0.161 Sum_probs=38.1
Q ss_pred ccccCCCccEEEEceeeccCCC---CCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEe
Q 044801 44 DACSSGNYGIVNIAFLTTFGNS---QTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 44 ~~c~~~~~dvV~laF~~~~~~g---~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
++...-++|+|-++=+.....| ++-..|+.. .+|.-++-.++++.|++||++|.+|||-+
T Consensus 23 ~YL~~LGv~~V~lsPi~~a~~gs~hGYdv~D~~~-idp~lGt~edf~~Lv~aah~~Gm~vIlDi 85 (825)
T TIGR02401 23 PYLKSLGVSHLYLSPILTAVPGSTHGYDVVDHSE-INPELGGEEGLRRLSEAARARGLGLIVDI 85 (825)
T ss_pred HHHHHcCCCEEEeCcCccCCCCCCCCCCCCCCCC-cCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 4445667899888722221111 232233331 23444567889999999999999999987
No 163
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=22.47 E-value=4.7e+02 Score=23.24 Aligned_cols=72 Identities=24% Similarity=0.146 Sum_probs=45.0
Q ss_pred cchHHHHHHHHhCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhhcCCCCCcccccccccceeeeecCCC--CchhHH
Q 044801 84 AGLSNEIKTCQGQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNFLGGQSSSRPLGDAVLDGIDFDIEGG--TNQHWD 161 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f~~g~s~~r~~~~~~lDGiDiD~E~~--~~~~~~ 161 (238)
..+.+.|+.++++|++|...+.-..+ ...+.+...++++.+ .++|.|.|-|=--.+ .+....
T Consensus 118 ~~~~~~i~~ak~~G~~v~~~i~~~~~--~~~~~~~~~~~~~~~--------------~~~Ga~~i~l~DT~G~~~P~~v~ 181 (275)
T cd07937 118 RNLEVAIKAVKKAGKHVEGAICYTGS--PVHTLEYYVKLAKEL--------------EDMGADSICIKDMAGLLTPYAAY 181 (275)
T ss_pred HHHHHHHHHHHHCCCeEEEEEEecCC--CCCCHHHHHHHHHHH--------------HHcCCCEEEEcCCCCCCCHHHHH
Confidence 45777888899999998877642211 123444445555543 456777766532222 246778
Q ss_pred HHHHHHHhhc
Q 044801 162 ELARALSNFS 171 (238)
Q Consensus 162 ~li~~LR~~~ 171 (238)
+++++||+..
T Consensus 182 ~lv~~l~~~~ 191 (275)
T cd07937 182 ELVKALKKEV 191 (275)
T ss_pred HHHHHHHHhC
Confidence 8999999865
No 164
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=22.43 E-value=1.7e+02 Score=30.04 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=23.7
Q ss_pred CCCCCCccchHHHHHHHHhCCCeEEEEe
Q 044801 77 DPTNNGCAGLSNEIKTCQGQGIKVLLSI 104 (238)
Q Consensus 77 ~~~~~~~~~l~~~I~~~q~~g~KVlLSi 104 (238)
+|.-++-.++.+.|+.++++|.||++.|
T Consensus 123 dp~~GT~eDf~~L~~~Ah~~G~~vi~Dl 150 (688)
T TIGR02455 123 DPLLGSEEELIQLSRMAAAHNAITIDDI 150 (688)
T ss_pred CcccCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 3444567889999999999999999998
No 165
>PTZ00301 uridine kinase; Provisional
Probab=22.18 E-value=1.9e+02 Score=24.90 Aligned_cols=13 Identities=46% Similarity=0.616 Sum_probs=9.6
Q ss_pred CeEEEEecCCCCc
Q 044801 98 IKVLLSIGGASGS 110 (238)
Q Consensus 98 ~KVlLSiGG~~~~ 110 (238)
++.|+.|+|.+|+
T Consensus 2 ~~~iIgIaG~SgS 14 (210)
T PTZ00301 2 PCTVIGISGASGS 14 (210)
T ss_pred CCEEEEEECCCcC
Confidence 3578889887765
No 166
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=21.96 E-value=2.6e+02 Score=25.02 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=35.3
Q ss_pred cchHHHHHHHHhCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhh
Q 044801 84 AGLSNEIKTCQGQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNF 130 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f 130 (238)
..+++.|+.+-..|++-++ ++|-+|....-|.++++++++...+..
T Consensus 26 ~~l~~li~~l~~~Gv~gi~-v~GstGE~~~Lt~eEr~~v~~~~~~~~ 71 (296)
T TIGR03249 26 AAYRENIEWLLGYGLEALF-AAGGTGEFFSLTPAEYEQVVEIAVSTA 71 (296)
T ss_pred HHHHHHHHHHHhcCCCEEE-ECCCCcCcccCCHHHHHHHHHHHHHHh
Confidence 5688999999889999888 666666655556778888888776643
No 167
>PRK15452 putative protease; Provisional
Probab=21.44 E-value=1.6e+02 Score=28.57 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=26.0
Q ss_pred cchHHHHHHHHhCCCeEEEEecCCCCcccCCCHHHHHHHHHHH
Q 044801 84 AGLSNEIKTCQGQGIKVLLSIGGASGSYSLSSADDARQVAQYL 126 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l 126 (238)
.++++.|+.||.+|+||.+.+= .+..+.+-..+.+.+
T Consensus 46 edl~eav~~ah~~g~kvyvt~n------~i~~e~el~~~~~~l 82 (443)
T PRK15452 46 ENLALGINEAHALGKKFYVVVN------IAPHNAKLKTFIRDL 82 (443)
T ss_pred HHHHHHHHHHHHcCCEEEEEec------CcCCHHHHHHHHHHH
Confidence 5689999999999999999863 233344445555543
No 168
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=21.40 E-value=2.7e+02 Score=25.06 Aligned_cols=46 Identities=20% Similarity=0.277 Sum_probs=35.7
Q ss_pred cchHHHHHHHHhCCCeEEEEecCCCCcccCCCHHHHHHHHHHHHHhh
Q 044801 84 AGLSNEIKTCQGQGIKVLLSIGGASGSYSLSSADDARQVAQYLWDNF 130 (238)
Q Consensus 84 ~~l~~~I~~~q~~g~KVlLSiGG~~~~~~~~s~~~~~~fa~~l~~~f 130 (238)
..+.+.|+.+-.+|++-++ ++|-+|....-|.++|.++.+.+.+..
T Consensus 21 ~~l~~lv~~~~~~Gv~gi~-v~GstGE~~~Ls~~Er~~l~~~~~~~~ 66 (294)
T TIGR02313 21 EALRELIEFQIEGGSHAIS-VGGTSGEPGSLTLEERKQAIENAIDQI 66 (294)
T ss_pred HHHHHHHHHHHHcCCCEEE-ECccCcccccCCHHHHHHHHHHHHHHh
Confidence 5688999998889998777 667777766667778899988766543
No 169
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=21.23 E-value=85 Score=27.87 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=14.6
Q ss_pred HHHHHHHHhCCCeEEEEecCCC
Q 044801 87 SNEIKTCQGQGIKVLLSIGGAS 108 (238)
Q Consensus 87 ~~~I~~~q~~g~KVlLSiGG~~ 108 (238)
...|+++-+.|+.|+||.|+++
T Consensus 103 ~~lL~~~A~tgkPvIlSTG~st 124 (241)
T PF03102_consen 103 LPLLEYIAKTGKPVILSTGMST 124 (241)
T ss_dssp HHHHHHHHTT-S-EEEE-TT--
T ss_pred HHHHHHHHHhCCcEEEECCCCC
Confidence 4578888889999999999965
No 170
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=20.89 E-value=66 Score=35.14 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=23.6
Q ss_pred ccchHHHHHHHHhCCCeEEEEecCCCCc
Q 044801 83 CAGLSNEIKTCQGQGIKVLLSIGGASGS 110 (238)
Q Consensus 83 ~~~l~~~I~~~q~~g~KVlLSiGG~~~~ 110 (238)
-..++..|+.+|.+|.+|-+-+||+.-+
T Consensus 797 ~~~m~~vi~~L~~~g~~v~v~vGGa~~s 824 (1178)
T TIGR02082 797 LDEMKEVAEEMNRRGITIPLLIGGAATS 824 (1178)
T ss_pred HHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 3567889999999999999999998643
No 171
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=20.59 E-value=1.2e+02 Score=26.63 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=35.1
Q ss_pred ccccCCCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEEecCC
Q 044801 44 DACSSGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLSIGGA 107 (238)
Q Consensus 44 ~~c~~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLSiGG~ 107 (238)
+++...+.|||++||-..... .+ . .....+.+.|+++.++|+-|+.|-|-.
T Consensus 96 ~~Ai~~gadIIn~S~g~~~~~-----~~-~-------~~~~~l~~ai~~A~~~GilvvaaAGN~ 146 (247)
T cd07491 96 EAAVEKKVDIISMSWTIKKPE-----DN-D-------NDINELENAIKEALDRGILLFCSASDQ 146 (247)
T ss_pred HHHHHCCCcEEEeeeeccccc-----cc-c-------cchHHHHHHHHHHHhCCeEEEEecCCC
Confidence 355677899999998543211 01 0 123678999999999998888888753
No 172
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=20.55 E-value=1.3e+02 Score=26.88 Aligned_cols=17 Identities=24% Similarity=0.694 Sum_probs=10.8
Q ss_pred HHHhCCCeEEEEecCCC
Q 044801 92 TCQGQGIKVLLSIGGAS 108 (238)
Q Consensus 92 ~~q~~g~KVlLSiGG~~ 108 (238)
-|..++.|+++.||...
T Consensus 147 vc~~~~mk~~~~V~~~~ 163 (233)
T KOG3858|consen 147 VCVTRNMKLLMKVGQSP 163 (233)
T ss_pred EeccCCceEEEEecccC
Confidence 35556667777777644
No 173
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=20.25 E-value=1.2e+02 Score=30.05 Aligned_cols=41 Identities=20% Similarity=0.454 Sum_probs=25.8
Q ss_pred ccEEEEc-eeec--cCCCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEE
Q 044801 51 YGIVNIA-FLTT--FGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLL 102 (238)
Q Consensus 51 ~dvV~la-F~~~--~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlL 102 (238)
-|+|++| |+++ |+++ -||.. -.-.+.+|++.|.+.|+-++.
T Consensus 46 ~d~vVvSIFVNP~QF~~~----eD~~~-------YPr~~~~D~~~l~~~gvd~vf 89 (512)
T PRK13477 46 NDVVLVSIFVNPLQFGPN----EDLER-------YPRTLEADRELCESAGVDAIF 89 (512)
T ss_pred CCEEEEEEccCcccCCCc----hhhhh-------CCCCHHHHHHHHHhcCCCEEE
Confidence 3667777 9987 3332 24442 124588888888887775544
No 174
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=20.00 E-value=1.1e+02 Score=24.56 Aligned_cols=46 Identities=22% Similarity=0.101 Sum_probs=28.7
Q ss_pred CCCccEEEEceeeccCCCCCcccccCCCCCCCCCCccchHHHHHHHHhCCCeEEEE
Q 044801 48 SGNYGIVNIAFLTTFGNSQTPQINLAGHCDPTNNGCAGLSNEIKTCQGQGIKVLLS 103 (238)
Q Consensus 48 ~~~~dvV~laF~~~~~~g~~p~~nl~~~~~~~~~~~~~l~~~I~~~q~~g~KVlLS 103 (238)
..++|+|++.|-......+.+ +. .-...+++.|+.++++|.+|++.
T Consensus 57 ~~~~d~v~i~~G~ND~~~~~~---~~-------~~~~~~~~li~~~~~~~~~~il~ 102 (183)
T cd04501 57 ALKPAVVIIMGGTNDIIVNTS---LE-------MIKDNIRSMVELAEANGIKVILA 102 (183)
T ss_pred hcCCCEEEEEeccCccccCCC---HH-------HHHHHHHHHHHHHHHCCCcEEEE
Confidence 356788888775443211111 10 12356788899999999998886
Done!