Query 044803
Match_columns 141
No_of_seqs 107 out of 1641
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 06:56:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044803.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044803hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 8.5E-24 1.8E-28 140.5 11.8 116 1-141 14-134 (160)
2 KOG0027 Calmodulin and related 99.9 1.5E-21 3.2E-26 130.5 11.1 120 1-141 2-127 (151)
3 KOG0031 Myosin regulatory ligh 99.8 1.5E-19 3.2E-24 117.7 11.3 116 1-141 26-143 (171)
4 KOG0028 Ca2+-binding protein ( 99.8 5.2E-19 1.1E-23 115.9 11.0 116 1-141 27-148 (172)
5 KOG0030 Myosin essential light 99.8 1.4E-18 2.9E-23 111.5 10.4 117 2-141 6-130 (152)
6 PTZ00183 centrin; Provisional 99.8 5.2E-18 1.1E-22 113.4 12.1 116 1-141 11-132 (158)
7 PTZ00184 calmodulin; Provision 99.8 1.2E-17 2.7E-22 110.4 12.1 115 1-140 5-125 (149)
8 KOG0034 Ca2+/calmodulin-depend 99.6 1E-14 2.3E-19 99.9 10.5 115 2-140 28-148 (187)
9 PLN02964 phosphatidylserine de 99.4 1.1E-12 2.5E-17 104.1 10.6 96 2-125 138-243 (644)
10 KOG0044 Ca2+ sensor (EF-Hand s 99.4 3.6E-12 7.8E-17 87.6 10.5 100 3-126 22-129 (193)
11 KOG0037 Ca2+-binding protein, 99.4 4.4E-12 9.6E-17 87.5 9.8 103 6-140 56-165 (221)
12 KOG0036 Predicted mitochondria 99.4 1.4E-11 3E-16 92.0 11.2 107 3-140 10-123 (463)
13 KOG0044 Ca2+ sensor (EF-Hand s 99.3 1.5E-11 3.2E-16 84.6 10.0 106 7-125 64-175 (193)
14 KOG0037 Ca2+-binding protein, 99.3 2.9E-11 6.2E-16 83.5 8.4 87 6-122 123-217 (221)
15 PF13499 EF-hand_7: EF-hand do 99.2 4.2E-11 9.1E-16 68.9 6.3 66 8-123 1-66 (66)
16 smart00027 EH Eps15 homology d 99.1 9E-10 1.9E-14 68.1 9.1 68 1-70 4-77 (96)
17 cd05022 S-100A13 S-100A13: S-1 99.1 6.1E-10 1.3E-14 67.8 7.2 63 5-67 6-77 (89)
18 PTZ00183 centrin; Provisional 99.1 2.1E-09 4.6E-14 71.6 10.5 97 6-126 52-155 (158)
19 KOG0027 Calmodulin and related 99.1 1.4E-09 2.9E-14 72.6 9.3 97 5-125 42-149 (151)
20 cd05027 S-100B S-100B: S-100B 99.1 1.2E-09 2.5E-14 66.5 7.9 62 6-67 7-81 (88)
21 COG5126 FRQ1 Ca2+-binding prot 99.1 3E-09 6.4E-14 71.1 9.8 96 5-125 54-156 (160)
22 KOG0377 Protein serine/threoni 99.0 1.4E-09 2.9E-14 82.3 7.8 121 6-140 463-592 (631)
23 PTZ00184 calmodulin; Provision 99.0 6.8E-09 1.5E-13 68.3 9.8 94 7-124 47-147 (149)
24 KOG0038 Ca2+-binding kinase in 98.9 6.8E-09 1.5E-13 67.8 8.0 92 23-140 55-150 (189)
25 cd00213 S-100 S-100: S-100 dom 98.9 7E-09 1.5E-13 63.0 7.6 65 3-67 4-81 (88)
26 cd05031 S-100A10_like S-100A10 98.9 9.2E-09 2E-13 63.3 7.5 61 6-66 7-80 (94)
27 cd05025 S-100A1 S-100A1: S-100 98.9 1.1E-08 2.4E-13 62.7 7.8 62 6-67 8-82 (92)
28 KOG0034 Ca2+/calmodulin-depend 98.9 3.1E-08 6.8E-13 68.1 9.7 101 9-126 68-176 (187)
29 cd05029 S-100A6 S-100A6: S-100 98.8 3.2E-08 7E-13 60.2 7.8 62 6-67 9-81 (88)
30 cd00052 EH Eps15 homology doma 98.8 2.2E-08 4.7E-13 57.4 6.7 56 10-67 2-63 (67)
31 cd05026 S-100Z S-100Z: S-100Z 98.8 3.4E-08 7.3E-13 60.7 7.9 62 6-67 9-83 (93)
32 PF00036 EF-hand_1: EF hand; 98.7 1.1E-08 2.4E-13 49.3 2.9 29 98-126 1-29 (29)
33 PF00036 EF-hand_1: EF hand; 98.7 2E-08 4.3E-13 48.3 3.6 29 8-36 1-29 (29)
34 cd00051 EFh EF-hand, calcium b 98.7 7.1E-08 1.5E-12 53.6 6.4 55 9-63 2-62 (63)
35 KOG0028 Ca2+-binding protein ( 98.7 2.5E-07 5.4E-12 61.3 9.6 97 6-126 68-171 (172)
36 KOG0751 Mitochondrial aspartat 98.6 9.4E-08 2E-12 73.4 6.9 104 7-140 108-220 (694)
37 PF13833 EF-hand_8: EF-hand do 98.6 2.6E-07 5.7E-12 50.8 5.5 46 20-65 1-53 (54)
38 cd05023 S-100A11 S-100A11: S-1 98.6 7.8E-07 1.7E-11 54.2 8.1 62 6-67 8-82 (89)
39 PF14658 EF-hand_9: EF-hand do 98.6 3E-07 6.6E-12 52.4 5.7 55 11-65 2-64 (66)
40 KOG0040 Ca2+-binding actin-bun 98.6 4.2E-07 9E-12 77.2 8.8 100 1-123 2247-2359(2399)
41 PF13405 EF-hand_6: EF-hand do 98.5 9.5E-08 2.1E-12 46.7 2.9 30 98-127 1-31 (31)
42 cd00252 SPARC_EC SPARC_EC; ext 98.5 6.2E-07 1.3E-11 57.2 7.2 57 3-63 44-106 (116)
43 KOG0041 Predicted Ca2+-binding 98.5 9.5E-07 2.1E-11 60.7 8.3 99 2-122 94-200 (244)
44 PF13405 EF-hand_6: EF-hand do 98.5 2.3E-07 5.1E-12 45.2 3.6 30 8-37 1-31 (31)
45 KOG4223 Reticulocalbin, calume 98.4 5.4E-07 1.2E-11 65.9 5.4 114 6-140 162-282 (325)
46 KOG4223 Reticulocalbin, calume 98.4 1E-06 2.2E-11 64.4 6.0 106 6-123 76-189 (325)
47 cd05030 calgranulins Calgranul 98.4 2.7E-06 5.8E-11 51.7 6.9 63 6-68 7-82 (88)
48 PF13833 EF-hand_8: EF-hand do 98.4 7.8E-07 1.7E-11 48.9 4.2 53 50-125 1-53 (54)
49 KOG0030 Myosin essential light 98.3 3.9E-06 8.4E-11 54.5 6.7 59 6-64 87-150 (152)
50 PF13499 EF-hand_7: EF-hand do 98.2 1E-06 2.2E-11 50.4 2.8 40 98-139 1-40 (66)
51 PF13202 EF-hand_5: EF hand; P 98.2 1.5E-06 3.3E-11 40.2 2.3 25 99-123 1-25 (25)
52 PF13202 EF-hand_5: EF hand; P 98.1 3.6E-06 7.8E-11 38.9 3.1 25 9-33 1-25 (25)
53 cd05022 S-100A13 S-100A13: S-1 98.1 1.9E-06 4.2E-11 52.4 2.6 46 94-141 5-53 (89)
54 KOG0036 Predicted mitochondria 98.1 2.8E-05 6.1E-10 58.8 8.3 89 8-125 52-146 (463)
55 KOG0031 Myosin regulatory ligh 98.0 3.4E-05 7.3E-10 51.1 7.3 60 6-65 100-165 (171)
56 KOG2643 Ca2+ binding protein, 98.0 1.8E-05 4E-10 60.2 6.9 92 7-126 233-347 (489)
57 cd05027 S-100B S-100B: S-100B 98.0 5.8E-06 1.3E-10 50.2 3.2 46 94-141 5-57 (88)
58 KOG0377 Protein serine/threoni 97.9 4.9E-05 1.1E-09 58.2 7.2 62 6-67 546-617 (631)
59 PF12763 EF-hand_4: Cytoskelet 97.9 8.7E-05 1.9E-09 46.4 6.8 64 1-67 4-73 (104)
60 PLN02964 phosphatidylserine de 97.9 8.2E-05 1.8E-09 60.0 8.3 60 7-66 179-244 (644)
61 KOG2562 Protein phosphatase 2 97.9 9.5E-05 2E-09 56.8 8.0 87 12-125 283-379 (493)
62 KOG1707 Predicted Ras related/ 97.9 0.00025 5.4E-09 56.1 10.4 126 1-127 189-345 (625)
63 cd05031 S-100A10_like S-100A10 97.8 2E-05 4.3E-10 48.4 3.0 46 94-141 5-57 (94)
64 cd00051 EFh EF-hand, calcium b 97.8 6.7E-05 1.4E-09 41.2 4.9 50 50-123 13-62 (63)
65 smart00027 EH Eps15 homology d 97.8 0.00015 3.3E-09 44.6 6.9 51 50-126 23-73 (96)
66 KOG2643 Ca2+ binding protein, 97.8 0.00024 5.2E-09 54.3 8.6 119 7-126 318-454 (489)
67 cd05025 S-100A1 S-100A1: S-100 97.7 3.4E-05 7.5E-10 47.1 3.2 48 94-141 6-58 (92)
68 KOG0751 Mitochondrial aspartat 97.7 0.00032 6.8E-09 54.6 9.0 97 6-128 32-139 (694)
69 cd05030 calgranulins Calgranul 97.7 0.00013 2.8E-09 44.3 5.2 58 51-127 24-81 (88)
70 KOG0038 Ca2+-binding kinase in 97.7 0.00047 1E-08 45.4 7.9 98 13-130 77-182 (189)
71 cd05024 S-100A10 S-100A10: A s 97.6 0.00083 1.8E-08 40.9 8.2 60 6-66 7-77 (91)
72 cd05026 S-100Z S-100Z: S-100Z 97.6 0.00031 6.7E-09 43.0 6.2 58 50-127 24-83 (93)
73 cd00213 S-100 S-100: S-100 dom 97.6 5.8E-05 1.3E-09 45.6 2.9 48 94-141 5-57 (88)
74 KOG0046 Ca2+-binding actin-bun 97.6 0.00038 8.3E-09 54.4 7.5 68 1-69 13-89 (627)
75 cd00252 SPARC_EC SPARC_EC; ext 97.5 0.00039 8.6E-09 44.4 5.7 55 41-123 46-106 (116)
76 cd05023 S-100A11 S-100A11: S-1 97.5 0.00065 1.4E-08 41.3 6.1 56 53-127 27-82 (89)
77 cd00052 EH Eps15 homology doma 97.4 0.00044 9.6E-09 39.1 4.9 52 50-127 12-63 (67)
78 smart00054 EFh EF-hand, calciu 97.4 0.00023 5E-09 32.7 3.0 28 8-35 1-28 (29)
79 cd05029 S-100A6 S-100A6: S-100 97.4 0.0005 1.1E-08 41.7 4.8 54 51-127 26-81 (88)
80 smart00054 EFh EF-hand, calciu 97.3 0.00026 5.6E-09 32.5 2.2 27 99-125 2-28 (29)
81 PF05042 Caleosin: Caleosin re 97.2 0.00048 1E-08 46.6 4.0 117 7-128 7-127 (174)
82 PF14788 EF-hand_10: EF hand; 97.2 0.00096 2.1E-08 36.0 4.3 33 94-126 18-50 (51)
83 PRK12309 transaldolase/EF-hand 97.2 0.0014 3.1E-08 50.2 6.4 53 6-68 333-388 (391)
84 KOG0169 Phosphoinositide-speci 97.1 0.0043 9.4E-08 50.5 8.6 106 5-140 134-247 (746)
85 PF10591 SPARC_Ca_bdg: Secrete 96.8 0.0005 1.1E-08 43.7 1.1 57 3-61 50-112 (113)
86 KOG0041 Predicted Ca2+-binding 96.8 0.002 4.4E-08 44.6 3.8 37 94-130 96-132 (244)
87 PF14788 EF-hand_10: EF hand; 96.8 0.0055 1.2E-07 33.1 4.7 42 24-65 2-49 (51)
88 cd05024 S-100A10 S-100A10: A s 96.7 0.0072 1.6E-07 36.8 5.2 59 50-127 20-78 (91)
89 KOG4251 Calcium binding protei 96.6 0.0062 1.3E-07 43.7 5.4 61 5-65 99-168 (362)
90 PF14658 EF-hand_9: EF-hand do 96.4 0.01 2.2E-07 33.9 4.6 53 50-125 11-64 (66)
91 PF09279 EF-hand_like: Phospho 96.4 0.024 5.3E-07 33.6 6.5 58 8-66 1-70 (83)
92 KOG4666 Predicted phosphate ac 96.4 0.01 2.2E-07 44.2 5.4 96 7-127 259-361 (412)
93 PRK12309 transaldolase/EF-hand 96.1 0.022 4.8E-07 43.8 6.4 26 100-125 360-385 (391)
94 KOG4065 Uncharacterized conser 96.1 0.037 8E-07 35.1 6.1 51 11-61 71-141 (144)
95 KOG4251 Calcium binding protei 95.9 0.02 4.3E-07 41.1 5.0 41 8-49 141-181 (362)
96 PF12763 EF-hand_4: Cytoskelet 95.9 0.031 6.7E-07 35.0 5.3 51 50-126 22-72 (104)
97 KOG0042 Glycerol-3-phosphate d 95.5 0.047 1E-06 43.6 6.0 70 1-70 587-662 (680)
98 KOG0035 Ca2+-binding actin-bun 95.1 0.14 3E-06 43.1 7.8 96 2-121 742-848 (890)
99 KOG0040 Ca2+-binding actin-bun 94.7 0.21 4.6E-06 44.3 8.0 73 50-139 2266-2338(2399)
100 KOG4666 Predicted phosphate ac 94.3 0.036 7.9E-07 41.3 2.5 56 50-128 272-328 (412)
101 KOG1707 Predicted Ras related/ 93.9 0.33 7.2E-06 39.1 7.1 65 1-65 309-377 (625)
102 PF09279 EF-hand_like: Phospho 92.4 0.18 4E-06 29.8 3.0 41 98-141 1-43 (83)
103 KOG2562 Protein phosphatase 2 92.3 0.93 2E-05 35.5 7.3 99 8-121 312-420 (493)
104 KOG1955 Ral-GTPase effector RA 90.8 0.83 1.8E-05 36.3 5.7 66 1-68 225-296 (737)
105 KOG3555 Ca2+-binding proteogly 90.8 0.48 1E-05 35.8 4.3 61 3-67 246-312 (434)
106 KOG1029 Endocytic adaptor prot 90.5 0.77 1.7E-05 38.3 5.5 61 4-66 192-258 (1118)
107 PF09069 EF-hand_3: EF-hand; 90.0 2.9 6.3E-05 25.4 6.9 58 7-65 3-75 (90)
108 PLN02952 phosphoinositide phos 89.9 0.86 1.9E-05 37.1 5.3 66 50-140 13-80 (599)
109 PF08726 EFhand_Ca_insen: Ca2+ 89.7 0.29 6.2E-06 28.2 1.9 30 94-124 3-32 (69)
110 KOG4347 GTPase-activating prot 89.6 0.55 1.2E-05 38.2 4.0 45 50-119 568-612 (671)
111 PF09068 EF-hand_2: EF hand; 89.1 2.3 5E-05 27.5 6.0 88 24-126 38-126 (127)
112 KOG2871 Uncharacterized conser 89.0 0.47 1E-05 36.2 3.1 39 92-130 304-342 (449)
113 KOG1029 Endocytic adaptor prot 88.7 0.92 2E-05 37.9 4.7 29 8-36 50-78 (1118)
114 PF05517 p25-alpha: p25-alpha 88.6 3.1 6.7E-05 27.8 6.6 61 10-70 2-74 (154)
115 KOG4578 Uncharacterized conser 88.1 0.24 5.1E-06 37.2 1.0 62 6-67 332-400 (421)
116 KOG1955 Ral-GTPase effector RA 86.7 0.81 1.8E-05 36.3 3.2 32 5-36 263-294 (737)
117 KOG4065 Uncharacterized conser 86.2 5.8 0.00012 25.4 6.3 70 39-122 62-142 (144)
118 PF12174 RST: RCD1-SRO-TAF4 (R 85.3 1.3 2.9E-05 25.5 3.0 52 52-130 7-59 (70)
119 COG4103 Uncharacterized protei 84.9 8.5 0.00019 25.5 6.8 88 11-125 34-129 (148)
120 KOG0998 Synaptic vesicle prote 84.6 0.52 1.1E-05 40.0 1.4 65 1-67 277-347 (847)
121 PRK09430 djlA Dna-J like membr 84.4 6.9 0.00015 28.6 7.1 49 19-68 67-123 (267)
122 TIGR02675 tape_meas_nterm tape 83.9 3.1 6.8E-05 24.2 4.2 41 19-59 26-75 (75)
123 cd07313 terB_like_2 tellurium 83.8 7.6 0.00016 23.6 7.4 78 20-122 12-97 (104)
124 PLN02952 phosphoinositide phos 83.5 11 0.00023 31.0 8.3 49 20-68 13-68 (599)
125 PF05042 Caleosin: Caleosin re 82.9 6.3 0.00014 27.0 5.8 60 6-65 95-166 (174)
126 KOG4347 GTPase-activating prot 82.4 1.7 3.6E-05 35.5 3.4 34 94-127 552-585 (671)
127 PF08414 NADPH_Ox: Respiratory 79.6 9.6 0.00021 23.6 5.3 56 7-67 30-94 (100)
128 PF10591 SPARC_Ca_bdg: Secrete 78.6 0.28 6.1E-06 31.1 -1.7 46 50-121 67-112 (113)
129 KOG0169 Phosphoinositide-speci 78.6 26 0.00056 29.5 8.9 96 6-126 171-275 (746)
130 KOG3555 Ca2+-binding proteogly 77.9 4.1 9E-05 31.0 4.0 92 8-127 212-312 (434)
131 KOG0046 Ca2+-binding actin-bun 77.3 9.9 0.00021 30.7 6.0 56 50-126 31-86 (627)
132 PF14513 DAG_kinase_N: Diacylg 77.3 5.2 0.00011 26.3 3.9 60 22-106 6-78 (138)
133 PF02761 Cbl_N2: CBL proto-onc 76.5 12 0.00027 22.4 5.0 66 39-128 3-73 (85)
134 KOG3866 DNA-binding protein of 76.1 9 0.00019 28.9 5.2 23 12-34 249-271 (442)
135 KOG2301 Voltage-gated Ca2+ cha 74.7 3.2 6.8E-05 37.8 3.0 64 1-66 1411-1485(1592)
136 KOG2243 Ca2+ release channel ( 71.8 8.2 0.00018 35.2 4.7 54 12-66 4062-4121(5019)
137 PF07879 PHB_acc_N: PHB/PHA ac 71.5 3.8 8.2E-05 23.2 1.9 22 104-125 10-31 (64)
138 PF00404 Dockerin_1: Dockerin 69.1 7.1 0.00015 16.9 2.1 17 107-123 1-17 (21)
139 PF14513 DAG_kinase_N: Diacylg 69.1 16 0.00034 24.1 4.7 32 105-140 42-74 (138)
140 PF11116 DUF2624: Protein of u 68.7 5.4 0.00012 24.0 2.2 27 112-140 13-39 (85)
141 PLN02222 phosphoinositide phos 63.9 44 0.00096 27.5 7.2 57 7-65 25-90 (581)
142 PF03672 UPF0154: Uncharacteri 63.6 18 0.00038 20.5 3.5 29 21-49 29-57 (64)
143 PF09069 EF-hand_3: EF-hand; 62.0 12 0.00027 22.7 2.9 30 96-126 2-31 (90)
144 PLN02230 phosphoinositide phos 61.4 52 0.0011 27.2 7.2 58 7-65 29-102 (598)
145 PF09336 Vps4_C: Vps4 C termin 60.8 11 0.00024 21.1 2.5 26 23-48 29-54 (62)
146 KOG2871 Uncharacterized conser 60.8 16 0.00035 28.2 4.0 43 7-49 309-351 (449)
147 KOG1264 Phospholipase C [Lipid 58.3 29 0.00062 29.9 5.2 60 10-69 147-212 (1267)
148 PF01023 S_100: S-100/ICaBP ty 58.2 25 0.00054 18.1 3.9 30 6-35 5-36 (44)
149 KOG4578 Uncharacterized conser 57.8 17 0.00036 27.7 3.6 54 50-126 346-399 (421)
150 PRK00523 hypothetical protein; 57.2 25 0.00054 20.4 3.5 29 21-49 37-65 (72)
151 KOG4403 Cell surface glycoprot 54.9 45 0.00096 26.4 5.5 56 6-61 67-125 (575)
152 KOG1265 Phospholipase C [Lipid 54.3 92 0.002 27.3 7.5 81 16-126 157-250 (1189)
153 PF05099 TerB: Tellurite resis 52.8 39 0.00086 21.5 4.5 74 20-118 36-117 (140)
154 TIGR01848 PHA_reg_PhaR polyhyd 50.8 14 0.0003 23.2 1.9 22 104-125 10-31 (107)
155 PRK01844 hypothetical protein; 50.5 37 0.0008 19.7 3.5 29 21-49 36-64 (72)
156 PF09373 PMBR: Pseudomurein-bi 50.4 17 0.00038 17.4 1.9 17 110-126 1-17 (33)
157 PF07308 DUF1456: Protein of u 50.2 19 0.00041 20.6 2.3 28 95-126 15-42 (68)
158 PLN02228 Phosphoinositide phos 49.0 66 0.0014 26.4 5.9 63 41-125 22-92 (567)
159 PLN02228 Phosphoinositide phos 48.4 1.2E+02 0.0025 25.1 7.2 58 7-66 24-93 (567)
160 PF12486 DUF3702: ImpA domain 48.0 65 0.0014 21.5 4.9 44 6-49 68-116 (148)
161 cd06404 PB1_aPKC PB1 domain is 47.7 52 0.0011 19.7 3.9 61 51-115 17-77 (83)
162 PF03683 UPF0175: Uncharacteri 45.5 36 0.00078 19.7 3.1 25 114-138 46-70 (76)
163 KOG4070 Putative signal transd 45.4 54 0.0012 22.1 4.1 63 5-67 10-87 (180)
164 PRK00819 RNA 2'-phosphotransfe 45.2 24 0.00052 24.3 2.6 31 108-140 28-58 (179)
165 COG3763 Uncharacterized protei 45.2 50 0.0011 19.1 3.4 29 21-49 36-64 (71)
166 KOG2243 Ca2+ release channel ( 44.6 17 0.00037 33.4 2.1 26 101-126 4061-4086(5019)
167 KOG0506 Glutaminase (contains 44.5 75 0.0016 25.7 5.4 54 12-65 91-158 (622)
168 PF01885 PTS_2-RNA: RNA 2'-pho 44.3 19 0.00042 24.9 2.0 32 107-140 26-57 (186)
169 PF14277 DUF4364: Domain of un 44.3 69 0.0015 21.6 4.7 40 31-70 7-47 (163)
170 PF03979 Sigma70_r1_1: Sigma-7 42.1 23 0.00051 20.8 1.9 42 4-49 4-45 (82)
171 KOG4403 Cell surface glycoprot 42.0 12 0.00025 29.5 0.7 32 94-125 65-96 (575)
172 TIGR01639 P_fal_TIGR01639 Plas 42.0 58 0.0012 18.0 3.4 29 21-49 7-35 (61)
173 PF08976 DUF1880: Domain of un 41.7 26 0.00056 22.4 2.1 26 40-65 4-35 (118)
174 PF07862 Nif11: Nitrogen fixat 41.1 42 0.0009 17.4 2.6 22 115-138 28-49 (49)
175 PF13623 SurA_N_2: SurA N-term 41.1 72 0.0016 21.1 4.3 18 50-67 45-62 (145)
176 TIGR03333 salvage_mtnX 2-hydro 41.0 1.2E+02 0.0026 20.9 6.2 47 20-67 6-53 (214)
177 PF01325 Fe_dep_repress: Iron 39.5 45 0.00098 18.3 2.7 32 1-34 2-33 (60)
178 KOG1265 Phospholipase C [Lipid 38.9 1.4E+02 0.0031 26.2 6.4 59 7-65 221-299 (1189)
179 TIGR02574 stabl_TIGR02574 puta 38.8 71 0.0015 17.7 3.9 26 6-31 33-58 (63)
180 KOG3866 DNA-binding protein of 38.2 27 0.00059 26.4 2.1 26 100-125 247-272 (442)
181 KOG3449 60S acidic ribosomal p 38.1 1E+02 0.0023 19.4 6.2 53 9-62 3-57 (112)
182 PF00046 Homeobox: Homeobox do 37.8 65 0.0014 16.9 4.3 39 1-46 7-45 (57)
183 TIGR00624 tag DNA-3-methyladen 35.7 1.3E+02 0.0029 20.7 5.0 53 7-61 53-114 (179)
184 PRK00819 RNA 2'-phosphotransfe 35.6 78 0.0017 21.8 3.9 32 18-49 28-59 (179)
185 PF08328 ASL_C: Adenylosuccina 34.8 1.1E+02 0.0025 19.5 4.2 50 17-66 47-96 (115)
186 PF06648 DUF1160: Protein of u 34.7 48 0.001 21.4 2.6 42 94-140 34-76 (122)
187 PF04282 DUF438: Family of unk 34.2 97 0.0021 17.9 6.0 9 54-62 46-54 (71)
188 PRK03968 DNA primase large sub 33.6 1.3E+02 0.0028 23.5 5.0 48 18-65 116-163 (399)
189 cd08315 Death_TRAILR_DR4_DR5 D 32.7 1.2E+02 0.0026 18.5 8.3 51 7-63 4-54 (96)
190 TIGR03798 ocin_TIGR03798 bacte 32.4 70 0.0015 17.7 2.8 23 114-138 25-47 (64)
191 PF05872 DUF853: Bacterial pro 31.9 94 0.002 25.0 4.2 62 1-67 122-184 (502)
192 TIGR01565 homeo_ZF_HD homeobox 31.7 96 0.0021 17.1 4.5 34 1-39 8-45 (58)
193 PRK14074 rpsF 30S ribosomal pr 31.3 1.4E+02 0.0031 21.7 4.7 69 1-69 14-85 (257)
194 PF13551 HTH_29: Winged helix- 31.0 1.2E+02 0.0027 18.1 5.8 9 23-31 80-88 (112)
195 COG5394 Uncharacterized protei 30.8 42 0.00091 22.8 1.9 22 104-125 19-40 (193)
196 COG2818 Tag 3-methyladenine DN 30.8 53 0.0012 22.8 2.5 54 7-60 55-117 (188)
197 PTZ00373 60S Acidic ribosomal 30.7 1.5E+02 0.0031 18.9 4.8 51 11-61 7-58 (112)
198 PF09851 SHOCT: Short C-termin 30.6 55 0.0012 15.4 1.8 15 111-125 14-28 (31)
199 PLN02230 phosphoinositide phos 30.2 74 0.0016 26.4 3.5 33 94-127 26-58 (598)
200 PF01885 PTS_2-RNA: RNA 2'-pho 30.1 87 0.0019 21.6 3.5 33 17-49 26-58 (186)
201 PRK14981 DNA-directed RNA poly 29.8 51 0.0011 20.8 2.1 23 115-139 80-102 (112)
202 COG5562 Phage envelope protein 29.4 40 0.00088 22.1 1.6 26 40-65 72-100 (137)
203 KOG0039 Ferric reductase, NADH 28.5 57 0.0012 27.2 2.7 32 94-126 15-46 (646)
204 smart00513 SAP Putative DNA-bi 28.3 79 0.0017 15.1 2.4 18 113-130 3-20 (35)
205 PF09312 SurA_N: SurA N-termin 28.2 1.3E+02 0.0028 18.8 3.8 30 35-64 62-95 (118)
206 PF02209 VHP: Villin headpiece 27.4 87 0.0019 15.5 2.3 11 113-123 1-11 (36)
207 KOG2557 Uncharacterized conser 26.8 2E+02 0.0044 22.5 5.1 32 95-126 92-123 (427)
208 COG1321 TroR Mn-dependent tran 26.8 70 0.0015 21.4 2.5 52 2-56 5-56 (154)
209 PLN02223 phosphoinositide phos 26.6 3.7E+02 0.0079 22.2 7.0 59 7-66 16-93 (537)
210 PRK09552 mtnX 2-hydroxy-3-keto 26.4 2.2E+02 0.0048 19.6 5.9 48 20-68 10-58 (219)
211 PLN02222 phosphoinositide phos 26.3 2.2E+02 0.0048 23.6 5.6 63 41-125 23-90 (581)
212 PF02037 SAP: SAP domain; Int 26.2 88 0.0019 15.0 2.2 18 113-130 3-20 (35)
213 smart00153 VHP Villin headpiec 26.1 96 0.0021 15.3 2.3 10 114-123 2-11 (36)
214 KOG0843 Transcription factor E 26.1 1.3E+02 0.0028 21.0 3.6 41 2-49 110-150 (197)
215 KOG4301 Beta-dystrobrevin [Cyt 26.1 3.1E+02 0.0067 21.3 5.9 56 14-69 117-177 (434)
216 PRK11511 DNA-binding transcrip 25.2 1.9E+02 0.004 18.3 5.2 55 6-65 8-63 (127)
217 cd01611 GABARAP Ubiquitin doma 25.0 1.7E+02 0.0037 18.4 3.9 55 50-114 47-101 (112)
218 KOG2301 Voltage-gated Ca2+ cha 24.8 63 0.0014 30.0 2.4 40 91-130 1411-1450(1592)
219 PF08839 CDT1: DNA replication 24.7 1.6E+02 0.0035 19.7 4.0 47 3-49 2-55 (163)
220 TIGR02787 codY_Gpos GTP-sensin 24.6 2.7E+02 0.0059 20.4 5.2 33 1-34 177-209 (251)
221 PF06384 ICAT: Beta-catenin-in 24.5 73 0.0016 18.8 1.9 20 117-138 20-39 (78)
222 TIGR03826 YvyF flagellar opero 24.4 1.4E+02 0.0031 19.6 3.5 51 6-61 29-79 (137)
223 cd05833 Ribosomal_P2 Ribosomal 24.1 1.9E+02 0.0042 18.1 4.8 56 11-66 5-61 (109)
224 KOG4004 Matricellular protein 24.0 30 0.00064 24.5 0.3 30 94-123 219-248 (259)
225 KOG4286 Dystrophin-like protei 23.9 64 0.0014 27.5 2.1 41 9-49 472-512 (966)
226 COG5611 Predicted nucleic-acid 23.9 2.1E+02 0.0045 18.4 6.0 42 8-49 22-65 (130)
227 TIGR01321 TrpR trp operon repr 23.4 1.8E+02 0.004 17.8 3.6 11 39-49 55-65 (94)
228 KOG0042 Glycerol-3-phosphate d 23.2 63 0.0014 26.7 2.0 40 97-138 593-632 (680)
229 COG2080 CoxS Aerobic-type carb 23.0 1.2E+02 0.0025 20.5 2.9 45 96-140 85-129 (156)
230 cd00086 homeodomain Homeodomai 22.7 1.3E+02 0.0028 15.6 5.6 41 2-49 8-48 (59)
231 PF06226 DUF1007: Protein of u 22.7 67 0.0015 22.6 1.9 22 105-126 58-79 (212)
232 PF11848 DUF3368: Domain of un 22.5 1E+02 0.0022 16.0 2.1 28 111-140 15-43 (48)
233 PF02269 TFIID-18kDa: Transcri 22.2 1.1E+02 0.0024 18.5 2.5 30 96-125 37-66 (93)
234 PF02885 Glycos_trans_3N: Glyc 21.8 1.6E+02 0.0034 16.3 6.0 30 37-66 12-44 (66)
235 PF13829 DUF4191: Domain of un 21.8 1.1E+02 0.0023 22.0 2.7 36 103-140 157-192 (224)
236 COG5069 SAC6 Ca2+-binding acti 21.4 2.2E+02 0.0047 23.2 4.5 59 9-67 487-550 (612)
237 TIGR03830 CxxCG_CxxCG_HTH puta 21.1 2.2E+02 0.0048 17.7 4.6 46 2-49 43-88 (127)
238 PF08671 SinI: Anti-repressor 21.1 89 0.0019 14.8 1.6 13 113-125 16-28 (30)
239 PF13344 Hydrolase_6: Haloacid 21.1 1.1E+02 0.0023 18.6 2.4 25 111-137 39-63 (101)
240 PF09693 Phage_XkdX: Phage unc 20.8 71 0.0015 16.0 1.3 13 111-123 24-36 (40)
241 PF10897 DUF2713: Protein of u 20.7 2.2E+02 0.0048 20.2 4.0 54 50-115 174-227 (246)
242 PRK10353 3-methyl-adenine DNA 20.7 91 0.002 21.7 2.2 55 7-61 54-117 (187)
243 PRK05988 formate dehydrogenase 20.6 1.8E+02 0.0038 19.5 3.5 19 2-20 4-22 (156)
244 PF14237 DUF4339: Domain of un 20.3 74 0.0016 16.2 1.3 20 107-126 7-26 (45)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.91 E-value=8.5e-24 Score=140.46 Aligned_cols=116 Identities=28% Similarity=0.492 Sum_probs=109.3
Q ss_pred CChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh-----hCCCcCHHHHHHHHHhhhhhccCCCC
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV-----GKSSLDLNEFLFFWKSISKQNNNKVD 75 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~-----~~g~i~~~ef~~~~~~~~~~~~~~~~ 75 (141)
++..++++++++|+.+|++++|.|+..+|..+++.+|++++..++..++ +.+.|+|.+|+.++.......
T Consensus 14 ~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~~~----- 88 (160)
T COG5126 14 LTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKRG----- 88 (160)
T ss_pred CCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhccC-----
Confidence 5788999999999999999999999999999999999999999999999 349999999999999988665
Q ss_pred CccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcCcCcCCChhHhhhcC
Q 044803 76 DHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLGLWDEKSGKDCTRMI 141 (141)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~s~~e~~~l~ 141 (141)
...+++++||+.||.+++|+|+..++..+++.+|..+ ++++++.|+
T Consensus 89 ------------------~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~--~deev~~ll 134 (160)
T COG5126 89 ------------------DKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERL--SDEEVEKLL 134 (160)
T ss_pred ------------------CcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccC--CHHHHHHHH
Confidence 7799999999999999999999999999999999999 999998874
No 2
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.87 E-value=1.5e-21 Score=130.48 Aligned_cols=120 Identities=35% Similarity=0.655 Sum_probs=106.4
Q ss_pred CChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCC
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKV 74 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~ 74 (141)
++..++.+++.+|+.||.+++|+|+..++..+++.+|.+++..++..++ ++|.|++.+|+.++..........
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~- 80 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDE- 80 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccc-
Confidence 4678889999999999999999999999999999999999999999999 789999999999998865443100
Q ss_pred CCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcCcCcCCChhHhhhcC
Q 044803 75 DDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLGLWDEKSGKDCTRMI 141 (141)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~s~~e~~~l~ 141 (141)
....+.++++|+.||.+++|+||..||+.+|..+|.+. +.++++.++
T Consensus 81 ------------------~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~--~~~e~~~mi 127 (151)
T KOG0027|consen 81 ------------------EASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKL--TDEECKEMI 127 (151)
T ss_pred ------------------cccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcC--CHHHHHHHH
Confidence 02356999999999999999999999999999999999 999988764
No 3
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.83 E-value=1.5e-19 Score=117.72 Aligned_cols=116 Identities=22% Similarity=0.366 Sum_probs=109.6
Q ss_pred CChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh--hCCCcCHHHHHHHHHhhhhhccCCCCCcc
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV--GKSSLDLNEFLFFWKSISKQNNNKVDDHE 78 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~--~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 78 (141)
+++-++++++++|+.+|.|+||.|+.++++..+.++|..++.+++..++ ..|.|+|--|+.++...+...
T Consensus 26 f~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gt-------- 97 (171)
T KOG0031|consen 26 FDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGT-------- 97 (171)
T ss_pred hhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCC--------
Confidence 3577899999999999999999999999999999999999999999999 889999999999999988776
Q ss_pred ccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcCcCcCCChhHhhhcC
Q 044803 79 VKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLGLWDEKSGKDCTRMI 141 (141)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~s~~e~~~l~ 141 (141)
.+++.+..||+.||.+++|.|..+.|+.+|...|.++ +++||++|+
T Consensus 98 ---------------dpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~--~~eEV~~m~ 143 (171)
T KOG0031|consen 98 ---------------DPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRF--TDEEVDEMY 143 (171)
T ss_pred ---------------CHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccC--CHHHHHHHH
Confidence 7799999999999999999999999999999999999 999998863
No 4
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=5.2e-19 Score=115.92 Aligned_cols=116 Identities=20% Similarity=0.336 Sum_probs=107.7
Q ss_pred CChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCC
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKV 74 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~ 74 (141)
+++.+.++++.+|..||.+++|+|+.++|+.+++++|+.+..+++..++ ++|.|+|++|...+.......
T Consensus 27 l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~---- 102 (172)
T KOG0028|consen 27 LTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGER---- 102 (172)
T ss_pred ccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhcc----
Confidence 4677889999999999999999999999999999999999999999999 679999999999988876655
Q ss_pred CCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcCcCcCCChhHhhhcC
Q 044803 75 DDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLGLWDEKSGKDCTRMI 141 (141)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~s~~e~~~l~ 141 (141)
...+++..+|+.+|.+++|.|+..+|+.+...+|..+ +++++.+||
T Consensus 103 -------------------dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenl--tD~El~eMI 148 (172)
T KOG0028|consen 103 -------------------DTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENL--TDEELMEMI 148 (172)
T ss_pred -------------------CcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccc--cHHHHHHHH
Confidence 6789999999999999999999999999999999999 999998764
No 5
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.79 E-value=1.4e-18 Score=111.48 Aligned_cols=117 Identities=26% Similarity=0.477 Sum_probs=105.8
Q ss_pred ChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh----h----CCCcCHHHHHHHHHhhhhhccCC
Q 044803 2 CPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV----G----KSSLDLNEFLFFWKSISKQNNNK 73 (141)
Q Consensus 2 s~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~----~----~g~i~~~ef~~~~~~~~~~~~~~ 73 (141)
++.+..+++.+|..||+.+||.|+..+...+|+.+|.+|+..++.+.. . -.+|+|++|+-++..+.+.+.+
T Consensus 6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q- 84 (152)
T KOG0030|consen 6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQ- 84 (152)
T ss_pred CcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcccc-
Confidence 567889999999999999999999999999999999999999999998 2 3789999999999988765421
Q ss_pred CCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcCcCcCCChhHhhhcC
Q 044803 74 VDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLGLWDEKSGKDCTRMI 141 (141)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~s~~e~~~l~ 141 (141)
...+..-+-++.||++++|+|...||+++|..+|..+ |++|++.++
T Consensus 85 --------------------~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl--~eeEVe~Ll 130 (152)
T KOG0030|consen 85 --------------------GTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKL--TEEEVEELL 130 (152)
T ss_pred --------------------CcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhc--cHHHHHHHH
Confidence 5678888889999999999999999999999999999 999998864
No 6
>PTZ00183 centrin; Provisional
Probab=99.78 E-value=5.2e-18 Score=113.42 Aligned_cols=116 Identities=23% Similarity=0.415 Sum_probs=103.0
Q ss_pred CChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCC
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKV 74 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~ 74 (141)
+++.++++++.+|..+|.+++|+|+..+|..+++.+|.+++...+..++ ++|.|+|.+|+..+.......
T Consensus 11 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~---- 86 (158)
T PTZ00183 11 LTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGER---- 86 (158)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCC----
Confidence 4678899999999999999999999999999999999988888899888 789999999999877654332
Q ss_pred CCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcCcCcCCChhHhhhcC
Q 044803 75 DDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLGLWDEKSGKDCTRMI 141 (141)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~s~~e~~~l~ 141 (141)
.....++.+|+.+|.+++|.|+.+||..++..+|.++ ++.++..++
T Consensus 87 -------------------~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l--~~~~~~~~~ 132 (158)
T PTZ00183 87 -------------------DPREEILKAFRLFDDDKTGKISLKNLKRVAKELGETI--TDEELQEMI 132 (158)
T ss_pred -------------------CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCC--CHHHHHHHH
Confidence 4567899999999999999999999999999999888 998887653
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.77 E-value=1.2e-17 Score=110.37 Aligned_cols=115 Identities=30% Similarity=0.550 Sum_probs=101.8
Q ss_pred CChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCC
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKV 74 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~ 74 (141)
+++.+.++++..|..+|.+++|.|+..+|..++..++.+++...+..++ ++|.|+|++|+..+.......
T Consensus 5 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~---- 80 (149)
T PTZ00184 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDT---- 80 (149)
T ss_pred cCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCC----
Confidence 4677889999999999999999999999999999999999988998888 689999999999887654332
Q ss_pred CCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcCcCcCCChhHhhhc
Q 044803 75 DDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLGLWDEKSGKDCTRM 140 (141)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~s~~e~~~l 140 (141)
.....+..+|+.+|.+++|.|+.++|..++..+|.++ +..++..+
T Consensus 81 -------------------~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~--~~~~~~~~ 125 (149)
T PTZ00184 81 -------------------DSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKL--TDEEVDEM 125 (149)
T ss_pred -------------------cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCC--CHHHHHHH
Confidence 4467889999999999999999999999999999888 88887765
No 8
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.61 E-value=1e-14 Score=99.94 Aligned_cols=115 Identities=30% Similarity=0.461 Sum_probs=97.7
Q ss_pred ChhhHHHHHHHHHhhCCC-CCCcccHHHHHHHHHHhCCCCCHHHHHHHh---hCCC-cCHHHHHHHHHhhhhhccCCCCC
Q 044803 2 CPLHTADLQRIFKQLDKN-GDDQVSLEELNWLLERIGVRLSLEELESFV---GKSS-LDLNEFLFFWKSISKQNNNKVDD 76 (141)
Q Consensus 2 s~~~~~~l~~~F~~~D~~-~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~---~~g~-i~~~ef~~~~~~~~~~~~~~~~~ 76 (141)
|..++..+...|.++|++ ++|+++.++|..+. .+..+|-...+-.++ ++|. |+|++|+..++.+.+..
T Consensus 28 s~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~-~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~------ 100 (187)
T KOG0034|consen 28 SANEIERLYERFKKLDRNNGDGYLTKEEFLSIP-ELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKA------ 100 (187)
T ss_pred CHHHHHHHHHHHHHhccccccCccCHHHHHHHH-HHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCc------
Confidence 556788899999999999 99999999999998 588899888888888 5555 99999999999988775
Q ss_pred ccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHc-CcCcCCChhHhhhc
Q 044803 77 HEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRL-GLWDEKSGKDCTRM 140 (141)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~~~~~s~~e~~~l 140 (141)
...++++-||+.||.+++|+|+++|+.+++..+ |.....+++++..+
T Consensus 101 -----------------~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i 148 (187)
T KOG0034|consen 101 -----------------SKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDI 148 (187)
T ss_pred -----------------cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHH
Confidence 666799999999999999999999999999997 54441136666544
No 9
>PLN02964 phosphatidylserine decarboxylase
Probab=99.44 E-value=1.1e-12 Score=104.06 Aligned_cols=96 Identities=21% Similarity=0.278 Sum_probs=83.8
Q ss_pred ChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC-CCCCHHH---HHHHh------hCCCcCHHHHHHHHHhhhhhcc
Q 044803 2 CPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIG-VRLSLEE---LESFV------GKSSLDLNEFLFFWKSISKQNN 71 (141)
Q Consensus 2 s~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~-~~~~~~~---~~~l~------~~g~i~~~ef~~~~~~~~~~~~ 71 (141)
+..++.+++++|..+|++++|.+ +..+++.+| ..++..+ ++.++ ++|.|+|.||+.++..... .
T Consensus 138 ~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~-~- 211 (644)
T PLN02964 138 VTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGN-L- 211 (644)
T ss_pred cHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhcc-C-
Confidence 45677899999999999999997 888999999 5888887 67777 7899999999999986432 1
Q ss_pred CCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHH
Q 044803 72 NKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSR 125 (141)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~ 125 (141)
...+++..+|+.||+|++|+|+.+||+.++..
T Consensus 212 ----------------------~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 212 ----------------------VAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred ----------------------CCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 55778999999999999999999999999999
No 10
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.41 E-value=3.6e-12 Score=87.64 Aligned_cols=100 Identities=20% Similarity=0.370 Sum_probs=86.9
Q ss_pred hhhHHHHHHHHHhhCCCC-CCcccHHHHHHHHHHhCCCCCHHHHHHHh-------hCCCcCHHHHHHHHHhhhhhccCCC
Q 044803 3 PLHTADLQRIFKQLDKNG-DDQVSLEELNWLLERIGVRLSLEELESFV-------GKSSLDLNEFLFFWKSISKQNNNKV 74 (141)
Q Consensus 3 ~~~~~~l~~~F~~~D~~~-~g~i~~~e~~~~l~~l~~~~~~~~~~~l~-------~~g~i~~~ef~~~~~~~~~~~~~~~ 74 (141)
....++++..|+.|-.+. +|.++.++|+.+++.+....+.+.+...+ ++|.|+|.||+..++.....
T Consensus 22 ~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG----- 96 (193)
T KOG0044|consen 22 KFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG----- 96 (193)
T ss_pred CCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC-----
Confidence 445678888888888777 89999999999999998766666666655 89999999999999988877
Q ss_pred CCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHc
Q 044803 75 DDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~ 126 (141)
...+.++++|+.||.|++|+|+++|+..+++.+
T Consensus 97 -------------------t~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 97 -------------------TLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred -------------------cHHHHhhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 778999999999999999999999999988874
No 11
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.39 E-value=4.4e-12 Score=87.46 Aligned_cols=103 Identities=22% Similarity=0.381 Sum_probs=88.1
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCCCCcc
Q 044803 6 TADLQRIFKQLDKNGDDQVSLEELNWLLERIG-VRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKVDDHE 78 (141)
Q Consensus 6 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~-~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 78 (141)
...+...|...|+++.|+|+.+|+..+|.... -+.+.+.++.++ ++|+|+++||..++..
T Consensus 56 ~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~------------- 122 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKY------------- 122 (221)
T ss_pred cHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHH-------------
Confidence 45788899999999999999999999999664 445566666666 8899999999999866
Q ss_pred ccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcCcCcCCChhHhhhc
Q 044803 79 VKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLGLWDEKSGKDCTRM 140 (141)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~s~~e~~~l 140 (141)
....+.+|+.||.|++|.|+..||+++|..+|..+ |+.-.+-|
T Consensus 123 -----------------i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~L--spq~~~~l 165 (221)
T KOG0037|consen 123 -----------------INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRL--SPQFYNLL 165 (221)
T ss_pred -----------------HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCC--CHHHHHHH
Confidence 55788999999999999999999999999999999 77655543
No 12
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.35 E-value=1.4e-11 Score=91.95 Aligned_cols=107 Identities=25% Similarity=0.383 Sum_probs=94.7
Q ss_pred hhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCC-CCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCCC
Q 044803 3 PLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVR-LSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKVD 75 (141)
Q Consensus 3 ~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~-~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~~ 75 (141)
++...+++.+|..||.+++|+++..++...+..+..+ +..+-++.++ .+|.++|++|.+.+.
T Consensus 10 ~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~----------- 78 (463)
T KOG0036|consen 10 EERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD----------- 78 (463)
T ss_pred HHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH-----------
Confidence 3445689999999999999999999999999998665 7777777777 789999999999887
Q ss_pred CccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcCcCcCCChhHhhhc
Q 044803 76 DHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLGLWDEKSGKDCTRM 140 (141)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~s~~e~~~l 140 (141)
..+.++.+.|...|.+.||.|+..|+...++.+|+++ ++++++.+
T Consensus 79 ------------------~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l--~de~~~k~ 123 (463)
T KOG0036|consen 79 ------------------NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQL--SDEKAAKF 123 (463)
T ss_pred ------------------HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCcc--CHHHHHHH
Confidence 4477899999999999999999999999999999999 99987764
No 13
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.34 E-value=1.5e-11 Score=84.60 Aligned_cols=106 Identities=20% Similarity=0.225 Sum_probs=90.2
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCCCCcccc
Q 044803 7 ADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKVDDHEVK 80 (141)
Q Consensus 7 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~ 80 (141)
.-..++|+.||.+++|.|+..||..+++.+..+...+.+...+ ++|.|+++|++.++.+++.....
T Consensus 64 ~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~-------- 135 (193)
T KOG0044|consen 64 KYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGS-------- 135 (193)
T ss_pred HHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHccc--------
Confidence 4567899999999999999999999999888888888888888 89999999999999998876531
Q ss_pred ccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHH
Q 044803 81 DEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSR 125 (141)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~ 125 (141)
. ..........+.+..+|+.+|.|+||.||.+||......
T Consensus 136 ----~-~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 136 ----K-ALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred ----c-cCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 0 111334478999999999999999999999999988765
No 14
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.28 E-value=2.9e-11 Score=83.50 Aligned_cols=87 Identities=23% Similarity=0.420 Sum_probs=76.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCCCCccc
Q 044803 6 TADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKVDDHEV 79 (141)
Q Consensus 6 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~ 79 (141)
++.|+.+|+.||+|++|.|+..||..+|..+|++++.+-+..++ +.|.|.|.+|++++..
T Consensus 123 i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~-------------- 188 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV-------------- 188 (221)
T ss_pred HHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHHHHH--------------
Confidence 67899999999999999999999999999999999999998888 4899999999999855
Q ss_pred cccccCCCCCCCCcchHHHHHhhcchhccCCCcccc--HHHHHHH
Q 044803 80 KDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFIS--CEELQNV 122 (141)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~--~~e~~~~ 122 (141)
...+.++|+.+|++..|.|+ .++|.++
T Consensus 189 ----------------L~~lt~~Fr~~D~~q~G~i~~~y~dfl~~ 217 (221)
T KOG0037|consen 189 ----------------LQRLTEAFRRRDTAQQGSITISYDDFLQM 217 (221)
T ss_pred ----------------HHHHHHHHHHhccccceeEEEeHHHHHHH
Confidence 66888999999999999765 4555443
No 15
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.23 E-value=4.2e-11 Score=68.91 Aligned_cols=66 Identities=38% Similarity=0.565 Sum_probs=54.0
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCC
Q 044803 8 DLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFVGKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDD 87 (141)
Q Consensus 8 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (141)
+++++|+.+|.+++|+|+..||..++..++...+..
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~-------------------------------------------- 36 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDE-------------------------------------------- 36 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHH--------------------------------------------
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHH--------------------------------------------
Confidence 478999999999999999999999999888776511
Q ss_pred CCCCCcchHHHHHhhcchhccCCCccccHHHHHHHH
Q 044803 88 NENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVL 123 (141)
Q Consensus 88 ~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l 123 (141)
.....+..+|+.+|++++|.|+.+||..++
T Consensus 37 ------~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 37 ------ESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp ------HHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 335567777888888888888888887764
No 16
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.12 E-value=9e-10 Score=68.10 Aligned_cols=68 Identities=28% Similarity=0.385 Sum_probs=60.6
Q ss_pred CChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhc
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQN 70 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~ 70 (141)
||+.++..++.+|..+|.+++|.|+..+++.+++.++ ++..++..++ ++|.|+|++|+.++.......
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~ 77 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKL 77 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999865 5778888888 689999999999988876554
No 17
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.09 E-value=6.1e-10 Score=67.84 Aligned_cols=63 Identities=22% Similarity=0.284 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhhCC-CCCCcccHHHHHHHHHH-hCCCCCH-HHHHHHh------hCCCcCHHHHHHHHHhhh
Q 044803 5 HTADLQRIFKQLDK-NGDDQVSLEELNWLLER-IGVRLSL-EELESFV------GKSSLDLNEFLFFWKSIS 67 (141)
Q Consensus 5 ~~~~l~~~F~~~D~-~~~g~i~~~e~~~~l~~-l~~~~~~-~~~~~l~------~~g~i~~~ef~~~~~~~~ 67 (141)
.+..+..+|+.||+ +++|+|+..+|+.+++. +|-.++. .++..++ ++|.|+|.||+.++....
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHH
Confidence 35689999999999 99999999999999999 8866777 8899998 899999999999887754
No 18
>PTZ00183 centrin; Provisional
Probab=99.09 E-value=2.1e-09 Score=71.59 Aligned_cols=97 Identities=23% Similarity=0.351 Sum_probs=79.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCCCCcc
Q 044803 6 TADLQRIFKQLDKNGDDQVSLEELNWLLERI-GVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKVDDHE 78 (141)
Q Consensus 6 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l-~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 78 (141)
...+..+|..+|.+++|.|++.+|..++... ........+..++ ++|.|++.+|..++...-..
T Consensus 52 ~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~--------- 122 (158)
T PTZ00183 52 KEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKELGET--------- 122 (158)
T ss_pred HHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCC---------
Confidence 3568899999999999999999999987754 3445566777777 78999999999988754221
Q ss_pred ccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHc
Q 044803 79 VKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~ 126 (141)
.....+..+|..+|.+++|.|+.++|..++...
T Consensus 123 ---------------l~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~ 155 (158)
T PTZ00183 123 ---------------ITDEELQEMIDEADRNGDGEISEEEFYRIMKKT 155 (158)
T ss_pred ---------------CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcc
Confidence 457789999999999999999999999998763
No 19
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.09 E-value=1.4e-09 Score=72.64 Aligned_cols=97 Identities=26% Similarity=0.416 Sum_probs=83.6
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCC-----CHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCC
Q 044803 5 HTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRL-----SLEELESFV------GKSSLDLNEFLFFWKSISKQNNNK 73 (141)
Q Consensus 5 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~-----~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~ 73 (141)
...++..+++.+|.+++|.|+..+|..++....... +.+++..+| ++|.|+..++..++...-..
T Consensus 42 t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~---- 117 (151)
T KOG0027|consen 42 TEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEK---- 117 (151)
T ss_pred CHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCc----
Confidence 467889999999999999999999999999775443 345888888 89999999999999887554
Q ss_pred CCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHH
Q 044803 74 VDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSR 125 (141)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~ 125 (141)
...+.+..+++..|.+++|.|+.++|..++..
T Consensus 118 --------------------~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 118 --------------------LTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred --------------------CCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 44889999999999999999999999998854
No 20
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.07 E-value=1.2e-09 Score=66.53 Aligned_cols=62 Identities=23% Similarity=0.421 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHH-----hCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhh
Q 044803 6 TADLQRIFKQLD-KNGDD-QVSLEELNWLLER-----IGVRLSLEELESFV------GKSSLDLNEFLFFWKSIS 67 (141)
Q Consensus 6 ~~~l~~~F~~~D-~~~~g-~i~~~e~~~~l~~-----l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~ 67 (141)
+..+.++|+.|| ++++| +|+..+++.+|+. +|..++..++..++ ++|+|+|.+|+.++....
T Consensus 7 ~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~~ 81 (88)
T cd05027 7 MVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMVT 81 (88)
T ss_pred HHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 568999999998 79999 5999999999999 89999999999999 789999999999887653
No 21
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.05 E-value=3e-09 Score=71.12 Aligned_cols=96 Identities=20% Similarity=0.346 Sum_probs=83.3
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCCCCc
Q 044803 5 HTADLQRIFKQLDKNGDDQVSLEELNWLLERI-GVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKVDDH 77 (141)
Q Consensus 5 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l-~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 77 (141)
..+.+.++|..+|. ++|.|++.+|..++... +...+.+++..+| ++|.|+..++..++...-..
T Consensus 54 s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~-------- 124 (160)
T COG5126 54 SEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGER-------- 124 (160)
T ss_pred cHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhccc--------
Confidence 34678899999999 89999999999999976 4666789999999 89999999999998854322
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHH
Q 044803 78 EVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSR 125 (141)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~ 125 (141)
...+++..+++.+|++++|.|+.++|.+.+..
T Consensus 125 ----------------~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 125 ----------------LSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred ----------------CCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 67899999999999999999999999998754
No 22
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=99.02 E-value=1.4e-09 Score=82.27 Aligned_cols=121 Identities=19% Similarity=0.207 Sum_probs=93.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHh----hCCCcCHHHHHHHHHhhhhhccCCCCCcccc
Q 044803 6 TADLQRIFKQLDKNGDDQVSLEELNWLLERI-GVRLSLEELESFV----GKSSLDLNEFLFFWKSISKQNNNKVDDHEVK 80 (141)
Q Consensus 6 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l-~~~~~~~~~~~l~----~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~ 80 (141)
..++.+.|+++|..++|+|+...|..++.++ |.++++.-++.-+ .+|.+.|...+..+..-...........+.+
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetL 542 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETL 542 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHH
Confidence 3578899999999999999999999999987 8999988877766 7899999988776554322221122233333
Q ss_pred ccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcC----cCcCCChhHhhhc
Q 044803 81 DEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLG----LWDEKSGKDCTRM 140 (141)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~----~~~~~s~~e~~~l 140 (141)
+ .....+..+|+.+|.|.+|.||.+||.++++-++ .++ +++++.++
T Consensus 543 Y------------r~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i--~~~~i~~l 592 (631)
T KOG0377|consen 543 Y------------RNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAI--SDDEILEL 592 (631)
T ss_pred H------------hchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCc--CHHHHHHH
Confidence 3 4567789999999999999999999999998864 455 78776543
No 23
>PTZ00184 calmodulin; Provisional
Probab=99.00 E-value=6.8e-09 Score=68.29 Aligned_cols=94 Identities=22% Similarity=0.346 Sum_probs=76.5
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCCCCccc
Q 044803 7 ADLQRIFKQLDKNGDDQVSLEELNWLLERI-GVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKVDDHEV 79 (141)
Q Consensus 7 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l-~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~ 79 (141)
..+..+|..+|.+++|.|++++|..++... ........+..++ ++|.|+..+|..++...-..
T Consensus 47 ~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~---------- 116 (149)
T PTZ00184 47 AELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEK---------- 116 (149)
T ss_pred HHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCC----------
Confidence 468899999999999999999999988764 3334455666666 78999999999888764221
Q ss_pred cccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHH
Q 044803 80 KDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLS 124 (141)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~ 124 (141)
.....+..+|..+|.+++|.|+.+||..++.
T Consensus 117 --------------~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 117 --------------LTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred --------------CCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 4567888999999999999999999998774
No 24
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.95 E-value=6.8e-09 Score=67.76 Aligned_cols=92 Identities=20% Similarity=0.329 Sum_probs=76.6
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHHh---hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHH
Q 044803 23 QVSLEELNWLLERIGVRLSLEELESFV---GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDL 99 (141)
Q Consensus 23 ~i~~~e~~~~l~~l~~~~~~~~~~~l~---~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 99 (141)
.++.+.+.. +..+.-+|-.+.|..++ +.|.++|++|+.+++.+.... ...-++
T Consensus 55 ~vp~e~i~k-MPELkenpfk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~A-----------------------PrdlK~ 110 (189)
T KOG0038|consen 55 KVPFELIEK-MPELKENPFKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMA-----------------------PRDLKA 110 (189)
T ss_pred eecHHHHhh-ChhhhcChHHHHHHHHhccCCCCcccHHHHHHHHHHHHhhC-----------------------hHHhhh
Confidence 455544443 55578888888999999 889999999999999887765 667788
Q ss_pred HhhcchhccCCCccccHHHHHHHHHHc-CcCcCCChhHhhhc
Q 044803 100 LEAFNVFDLNGDGFISCEELQNVLSRL-GLWDEKSGKDCTRM 140 (141)
Q Consensus 100 ~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~~~~~s~~e~~~l 140 (141)
..||++||-|++++|..+++...++.+ ...+ |++|++.+
T Consensus 111 ~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eL--s~eEv~~i 150 (189)
T KOG0038|consen 111 KYAFKIYDFDGDEFIGHDDLEKTLTSLTRDEL--SDEEVELI 150 (189)
T ss_pred hheeEEeecCCCCcccHHHHHHHHHHHhhccC--CHHHHHHH
Confidence 899999999999999999999999998 5566 99988764
No 25
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.94 E-value=7e-09 Score=63.00 Aligned_cols=65 Identities=20% Similarity=0.320 Sum_probs=55.7
Q ss_pred hhhHHHHHHHHHhhCC--CCCCcccHHHHHHHHHH-hCCC----CCHHHHHHHh------hCCCcCHHHHHHHHHhhh
Q 044803 3 PLHTADLQRIFKQLDK--NGDDQVSLEELNWLLER-IGVR----LSLEELESFV------GKSSLDLNEFLFFWKSIS 67 (141)
Q Consensus 3 ~~~~~~l~~~F~~~D~--~~~g~i~~~e~~~~l~~-l~~~----~~~~~~~~l~------~~g~i~~~ef~~~~~~~~ 67 (141)
+.+++.++.+|..||+ +++|.|+..++..+++. +|.. ++..++..++ ++|.|+|++|+.++....
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 4678899999999999 89999999999999986 4543 4588899988 679999999999887754
No 26
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.91 E-value=9.2e-09 Score=63.31 Aligned_cols=61 Identities=16% Similarity=0.332 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhCC-CC-CCcccHHHHHHHHHH-----hCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhh
Q 044803 6 TADLQRIFKQLDK-NG-DDQVSLEELNWLLER-----IGVRLSLEELESFV------GKSSLDLNEFLFFWKSI 66 (141)
Q Consensus 6 ~~~l~~~F~~~D~-~~-~g~i~~~e~~~~l~~-----l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~ 66 (141)
...+..+|..||. ++ +|+|+..+++.+++. ++..++..++..++ ++|.|+|.+|+.++...
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 5689999999997 87 699999999999986 56788899999998 78999999999877653
No 27
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.91 E-value=1.1e-08 Score=62.67 Aligned_cols=62 Identities=23% Similarity=0.467 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhC-CCCCCc-ccHHHHHHHHHH-hC----CCCCHHHHHHHh------hCCCcCHHHHHHHHHhhh
Q 044803 6 TADLQRIFKQLD-KNGDDQ-VSLEELNWLLER-IG----VRLSLEELESFV------GKSSLDLNEFLFFWKSIS 67 (141)
Q Consensus 6 ~~~l~~~F~~~D-~~~~g~-i~~~e~~~~l~~-l~----~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~ 67 (141)
+..++++|+.|| ++++|+ |+..+++.+|+. +| ..++..++..++ ++|.|+|.+|+.++....
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHH
Confidence 357999999997 999995 999999999985 43 457889999999 689999999999887654
No 28
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.87 E-value=3.1e-08 Score=68.13 Aligned_cols=101 Identities=25% Similarity=0.359 Sum_probs=81.5
Q ss_pred HHHHHHhhCCCCCCc-ccHHHHHHHHHHhCCCCCHH-HHHHHh------hCCCcCHHHHHHHHHhhhhhccCCCCCcccc
Q 044803 9 LQRIFKQLDKNGDDQ-VSLEELNWLLERIGVRLSLE-ELESFV------GKSSLDLNEFLFFWKSISKQNNNKVDDHEVK 80 (141)
Q Consensus 9 l~~~F~~~D~~~~g~-i~~~e~~~~l~~l~~~~~~~-~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~ 80 (141)
..+++..|+.+++|. |++++|..++..+..+-+.+ .++-++ ++|.|+.+++..++.........
T Consensus 68 ~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~-------- 139 (187)
T KOG0034|consen 68 ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDD-------- 139 (187)
T ss_pred HHHHHHHHhccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCc--------
Confidence 457888899999988 99999999999776655555 665555 89999999999999998764310
Q ss_pred ccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHc
Q 044803 81 DEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~ 126 (141)
...+...+-+...|..+|.++||.|+.+||..++...
T Consensus 140 ---------~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 140 ---------MSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred ---------chHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 0122567778899999999999999999999999775
No 29
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.84 E-value=3.2e-08 Score=60.19 Aligned_cols=62 Identities=23% Similarity=0.466 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhCC-CC-CCcccHHHHHHHHHH---hCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhh
Q 044803 6 TADLQRIFKQLDK-NG-DDQVSLEELNWLLER---IGVRLSLEELESFV------GKSSLDLNEFLFFWKSIS 67 (141)
Q Consensus 6 ~~~l~~~F~~~D~-~~-~g~i~~~e~~~~l~~---l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~ 67 (141)
+..+-.+|++||. ++ +|+|+..||+.+++. +|..++.+++..++ ++|+|+|.+|+.++....
T Consensus 9 ~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 9 IGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 4578899999998 67 899999999999973 68889999999999 789999999998877643
No 30
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.83 E-value=2.2e-08 Score=57.36 Aligned_cols=56 Identities=29% Similarity=0.414 Sum_probs=49.2
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhh
Q 044803 10 QRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSIS 67 (141)
Q Consensus 10 ~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~ 67 (141)
+++|..+|.+++|.|+..++..++..+|. +.+++..++ ++|.|+|.+|+..+..+.
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~--~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGL--PRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCC--CHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 57899999999999999999999998875 778888888 689999999999887653
No 31
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.83 E-value=3.4e-08 Score=60.72 Aligned_cols=62 Identities=27% Similarity=0.438 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhC-CCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhh
Q 044803 6 TADLQRIFKQLD-KNGDD-QVSLEELNWLLERI-----GVRLSLEELESFV------GKSSLDLNEFLFFWKSIS 67 (141)
Q Consensus 6 ~~~l~~~F~~~D-~~~~g-~i~~~e~~~~l~~l-----~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~ 67 (141)
+..+.++|+.|| .+++| +|+..||+.+++.. +...+..++..++ ++|.|+|.||+.++..+.
T Consensus 9 ~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 9 MDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 457889999999 78998 59999999999763 3345777888888 789999999999887653
No 32
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.74 E-value=1.1e-08 Score=49.25 Aligned_cols=29 Identities=45% Similarity=0.792 Sum_probs=26.6
Q ss_pred HHHhhcchhccCCCccccHHHHHHHHHHc
Q 044803 98 DLLEAFNVFDLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 98 ~l~~~F~~~D~~~~g~I~~~e~~~~l~~~ 126 (141)
+++++|+.||+|++|+|+.+||+.+++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 47899999999999999999999999864
No 33
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.73 E-value=2e-08 Score=48.34 Aligned_cols=29 Identities=28% Similarity=0.779 Sum_probs=26.8
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 044803 8 DLQRIFKQLDKNGDDQVSLEELNWLLERI 36 (141)
Q Consensus 8 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~l 36 (141)
+++++|+.||+|+||+|+.+||..+++++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 57899999999999999999999999864
No 34
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.72 E-value=7.1e-08 Score=53.57 Aligned_cols=55 Identities=36% Similarity=0.663 Sum_probs=50.4
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHH
Q 044803 9 LQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFW 63 (141)
Q Consensus 9 l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~ 63 (141)
+..+|..+|.+++|.|+..++..+++.++.+.+...+..++ ++|.|++.+|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 67889999999999999999999999999999999998888 67899999998764
No 35
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=98.72 E-value=2.5e-07 Score=61.32 Aligned_cols=97 Identities=18% Similarity=0.362 Sum_probs=83.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCCCCcc
Q 044803 6 TADLQRIFKQLDKNGDDQVSLEELNWLLER-IGVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKVDDHE 78 (141)
Q Consensus 6 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~-l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 78 (141)
..++.++..-+|+++.|.|++++|..++.. ++..-+.+++...| ++|+|++.+|..+....-..
T Consensus 68 k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgen--------- 138 (172)
T KOG0028|consen 68 KEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGEN--------- 138 (172)
T ss_pred hHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCcc---------
Confidence 456778888899999999999999998664 57777999999999 88999999999987765443
Q ss_pred ccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHc
Q 044803 79 VKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~ 126 (141)
...+++++.-..+|.+++|.|+.+||..+++..
T Consensus 139 ---------------ltD~El~eMIeEAd~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 139 ---------------LTDEELMEMIEEADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred ---------------ccHHHHHHHHHHhcccccccccHHHHHHHHhcC
Confidence 557789999999999999999999999998753
No 36
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.65 E-value=9.4e-08 Score=73.40 Aligned_cols=104 Identities=20% Similarity=0.298 Sum_probs=89.3
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhC------CCCCHHHHHHHh---hCCCcCHHHHHHHHHhhhhhccCCCCCc
Q 044803 7 ADLQRIFKQLDKNGDDQVSLEELNWLLERIG------VRLSLEELESFV---GKSSLDLNEFLFFWKSISKQNNNKVDDH 77 (141)
Q Consensus 7 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~------~~~~~~~~~~l~---~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 77 (141)
+....+|+.||+.++|.++.+++..++.+.. ++.+.+-|+..+ ....++|.+|.+++...
T Consensus 108 al~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~----------- 176 (694)
T KOG0751|consen 108 ALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEF----------- 176 (694)
T ss_pred HHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHH-----------
Confidence 4567899999999999999999999999763 556778888888 55789999999999874
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcCcCcCCChhHhhhc
Q 044803 78 EVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLGLWDEKSGKDCTRM 140 (141)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~s~~e~~~l 140 (141)
..+...++|+..|+.++|+||.-+|++++..+..++ +...+++.
T Consensus 177 -----------------~~E~~~qafr~~d~~~ng~is~Ldfq~imvt~~~h~--lt~~v~~n 220 (694)
T KOG0751|consen 177 -----------------QLEHAEQAFREKDKAKNGFISVLDFQDIMVTIRIHL--LTPFVEEN 220 (694)
T ss_pred -----------------HHHHHHHHHHHhcccCCCeeeeechHhhhhhhhhhc--CCHHHhhh
Confidence 466789999999999999999999999999998887 77776653
No 37
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.56 E-value=2.6e-07 Score=50.83 Aligned_cols=46 Identities=26% Similarity=0.573 Sum_probs=42.2
Q ss_pred CCCcccHHHHHHHHHHhCCC-CCHHHHHHHh------hCCCcCHHHHHHHHHh
Q 044803 20 GDDQVSLEELNWLLERIGVR-LSLEELESFV------GKSSLDLNEFLFFWKS 65 (141)
Q Consensus 20 ~~g~i~~~e~~~~l~~l~~~-~~~~~~~~l~------~~g~i~~~ef~~~~~~ 65 (141)
.+|.|+.++|..+++.+|.. ++..++..++ ++|.|+|.||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999888999 9999999999 8999999999998753
No 38
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.56 E-value=7.8e-07 Score=54.20 Aligned_cols=62 Identities=23% Similarity=0.358 Sum_probs=51.4
Q ss_pred HHHHHHHHHh-hCCCCCC-cccHHHHHHHHHHh-----CCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhh
Q 044803 6 TADLQRIFKQ-LDKNGDD-QVSLEELNWLLERI-----GVRLSLEELESFV------GKSSLDLNEFLFFWKSIS 67 (141)
Q Consensus 6 ~~~l~~~F~~-~D~~~~g-~i~~~e~~~~l~~l-----~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~ 67 (141)
+..|..+|+. +|++++| +|+..||+.++... +...+..++..++ ++|.|+|+||+.++..+.
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 5689999999 7788876 99999999999875 3345678888888 789999999999877653
No 39
>PF14658 EF-hand_9: EF-hand domain
Probab=98.56 E-value=3e-07 Score=52.40 Aligned_cols=55 Identities=18% Similarity=0.335 Sum_probs=49.9
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCC-CCCHHHHHHHh-------hCCCcCHHHHHHHHHh
Q 044803 11 RIFKQLDKNGDDQVSLEELNWLLERIGV-RLSLEELESFV-------GKSSLDLNEFLFFWKS 65 (141)
Q Consensus 11 ~~F~~~D~~~~g~i~~~e~~~~l~~l~~-~~~~~~~~~l~-------~~g~i~~~ef~~~~~~ 65 (141)
.+|..||.++.|.|...++...|+.++. +|++.+++.+. .+|.|+|+.|+.+++.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 3689999999999999999999999987 99999999999 4499999999998864
No 40
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.56 E-value=4.2e-07 Score=77.22 Aligned_cols=100 Identities=22% Similarity=0.393 Sum_probs=81.8
Q ss_pred CChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCC--HH-----HHHHHh------hCCCcCHHHHHHHHHhhh
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLS--LE-----ELESFV------GKSSLDLNEFLFFWKSIS 67 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~--~~-----~~~~l~------~~g~i~~~ef~~~~~~~~ 67 (141)
+|+.++.++.-+|..||++.+|+++..+|+.+|+++|+.++ ++ ++..++ .+|.|+..+|+.++...-
T Consensus 2247 VtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~E 2326 (2399)
T KOG0040|consen 2247 VTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKE 2326 (2399)
T ss_pred CCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcc
Confidence 47788899999999999999999999999999999998763 23 556666 789999999999887643
Q ss_pred hhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHH
Q 044803 68 KQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVL 123 (141)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l 123 (141)
..+. .....+..+|+.+|. +..+|+.+++.+-|
T Consensus 2327 TeNI----------------------~s~~eIE~AfraL~a-~~~yvtke~~~~~l 2359 (2399)
T KOG0040|consen 2327 TENI----------------------LSSEEIEDAFRALDA-GKPYVTKEELYQNL 2359 (2399)
T ss_pred cccc----------------------cchHHHHHHHHHhhc-CCccccHHHHHhcC
Confidence 3321 335599999999999 88899999986544
No 41
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.54 E-value=9.5e-08 Score=46.67 Aligned_cols=30 Identities=57% Similarity=0.966 Sum_probs=26.4
Q ss_pred HHHhhcchhccCCCccccHHHHHHHHH-HcC
Q 044803 98 DLLEAFNVFDLNGDGFISCEELQNVLS-RLG 127 (141)
Q Consensus 98 ~l~~~F~~~D~~~~g~I~~~e~~~~l~-~~~ 127 (141)
+++.+|+.||.+++|+|+.+||+.+|+ .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478899999999999999999999999 565
No 42
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.52 E-value=6.2e-07 Score=57.23 Aligned_cols=57 Identities=25% Similarity=0.415 Sum_probs=47.8
Q ss_pred hhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHH
Q 044803 3 PLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFW 63 (141)
Q Consensus 3 ~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~ 63 (141)
+....++..+|..+|.|+||+|+..|+..+. ..+....+..++ ++|.||++||..++
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 4556789999999999999999999999865 344456666666 89999999999988
No 43
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.52 E-value=9.5e-07 Score=60.70 Aligned_cols=99 Identities=22% Similarity=0.386 Sum_probs=75.6
Q ss_pred ChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCCC
Q 044803 2 CPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKVD 75 (141)
Q Consensus 2 s~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~~ 75 (141)
|..++..+...|..||.+.||+|+..|++.+|..||.+-+.--++.++ .+|+|+|.+|+-++.......
T Consensus 94 srkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrkaaagE----- 168 (244)
T KOG0041|consen 94 SRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAAGE----- 168 (244)
T ss_pred HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhccc-----
Confidence 456788999999999999999999999999999999998877777777 789999999999887765432
Q ss_pred CccccccccCCCCCCCCcchHHHHHhh--cchhccCCCccccHHHHHHH
Q 044803 76 DHEVKDEINGDDNENDDDGEISDLLEA--FNVFDLNGDGFISCEELQNV 122 (141)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--F~~~D~~~~g~I~~~e~~~~ 122 (141)
......+..+ ....|...-|+-....|-.+
T Consensus 169 -----------------L~~ds~~~~LAr~~eVDVskeGV~GAknFFeA 200 (244)
T KOG0041|consen 169 -----------------LQEDSGLLRLARLSEVDVSKEGVSGAKNFFEA 200 (244)
T ss_pred -----------------cccchHHHHHHHhcccchhhhhhhhHHHHHHH
Confidence 0111222222 33468878787777776654
No 44
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.49 E-value=2.3e-07 Score=45.25 Aligned_cols=30 Identities=40% Similarity=0.720 Sum_probs=26.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHH-HhC
Q 044803 8 DLQRIFKQLDKNGDDQVSLEELNWLLE-RIG 37 (141)
Q Consensus 8 ~l~~~F~~~D~~~~g~i~~~e~~~~l~-~l~ 37 (141)
+++.+|..+|.+++|+|+.+||..+++ ++|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 578999999999999999999999999 565
No 45
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.41 E-value=5.4e-07 Score=65.87 Aligned_cols=114 Identities=20% Similarity=0.243 Sum_probs=77.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhC-CCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCCCCcc
Q 044803 6 TADLQRIFKQLDKNGDDQVSLEELNWLLERIG-VRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKVDDHE 78 (141)
Q Consensus 6 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~-~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 78 (141)
+..-++.|+..|.|++|.++.+||-.+|.--. ..+..--++.-+ ++|+|+++||+.-+......
T Consensus 162 ~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~--------- 232 (325)
T KOG4223|consen 162 IARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGN--------- 232 (325)
T ss_pred HHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCC---------
Confidence 34567889999999999999999999887332 222222223333 89999999999987765431
Q ss_pred ccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcCcCcCCChhHhhhc
Q 044803 79 VKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLGLWDEKSGKDCTRM 140 (141)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~s~~e~~~l 140 (141)
+..+.-...+-.+.+.-+|+|++|+++.+|+++-+.--+... ...|...|
T Consensus 233 ----------~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~--A~~EA~hL 282 (325)
T KOG4223|consen 233 ----------EEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDH--AKAEARHL 282 (325)
T ss_pred ----------CCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCCccH--HHHHHHHH
Confidence 111223444555677778999999999999996665444444 44554443
No 46
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=1e-06 Score=64.43 Aligned_cols=106 Identities=21% Similarity=0.214 Sum_probs=66.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhc--cCCCCCc
Q 044803 6 TADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQN--NNKVDDH 77 (141)
Q Consensus 6 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~--~~~~~~~ 77 (141)
..++.+++..+|.+++|+|+..+++.++..........+....| .+|.|+|++|........... ..+....
T Consensus 76 ~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~ 155 (325)
T KOG4223|consen 76 QERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDN 155 (325)
T ss_pred HHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccchhc
Confidence 46799999999999999999999999887554333333333333 799999999998877543211 0001111
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHH
Q 044803 78 EVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVL 123 (141)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l 123 (141)
+. .......-++.|+.-|.|++|.+|++||..+|
T Consensus 156 ~~------------~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFL 189 (325)
T KOG4223|consen 156 EE------------YKKMIARDEERFKAADQDGDGSLTLEEFTAFL 189 (325)
T ss_pred HH------------HHHHHHHHHHHHhhcccCCCCcccHHHHHhcc
Confidence 11 11233334455666666666666666666555
No 47
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.37 E-value=2.7e-06 Score=51.72 Aligned_cols=63 Identities=17% Similarity=0.297 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhCCC--CCCcccHHHHHHHHH-HhCCCCC----HHHHHHHh------hCCCcCHHHHHHHHHhhhh
Q 044803 6 TADLQRIFKQLDKN--GDDQVSLEELNWLLE-RIGVRLS----LEELESFV------GKSSLDLNEFLFFWKSISK 68 (141)
Q Consensus 6 ~~~l~~~F~~~D~~--~~g~i~~~e~~~~l~-~l~~~~~----~~~~~~l~------~~g~i~~~ef~~~~~~~~~ 68 (141)
+..+...|+.|+.. .+|.|+..+|+.++. .++..++ ..++..++ ++|.|+|.+|+.++.....
T Consensus 7 i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~~ 82 (88)
T cd05030 7 IETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVGV 82 (88)
T ss_pred HHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHHH
Confidence 46788999999966 479999999999997 5565565 88899998 7899999999998887643
No 48
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.36 E-value=7.8e-07 Score=48.89 Aligned_cols=53 Identities=23% Similarity=0.407 Sum_probs=42.8
Q ss_pred hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHH
Q 044803 50 GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSR 125 (141)
Q Consensus 50 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~ 125 (141)
++|.|+.++|..++...--.. ...+++..+|..+|.+++|.|+.+||..++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~-----------------------~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKD-----------------------LSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSS-----------------------SCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCC-----------------------CCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 478999999999995431110 23566999999999999999999999999875
No 49
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.30 E-value=3.9e-06 Score=54.50 Aligned_cols=59 Identities=22% Similarity=0.404 Sum_probs=53.7
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh-----hCCCcCHHHHHHHHH
Q 044803 6 TADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV-----GKSSLDLNEFLFFWK 64 (141)
Q Consensus 6 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~-----~~g~i~~~ef~~~~~ 64 (141)
..++-+-.+.||++++|+|...+++.+|..+|-.++++++..++ .+|.|+|+.|+..+.
T Consensus 87 ~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Llag~eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 87 YEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLAGQEDSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHccccccCCcCcHHHHHHHHh
Confidence 45677778899999999999999999999999999999999999 679999999998764
No 50
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.24 E-value=1e-06 Score=50.39 Aligned_cols=40 Identities=45% Similarity=0.639 Sum_probs=34.5
Q ss_pred HHHhhcchhccCCCccccHHHHHHHHHHcCcCcCCChhHhhh
Q 044803 98 DLLEAFNVFDLNGDGFISCEELQNVLSRLGLWDEKSGKDCTR 139 (141)
Q Consensus 98 ~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~s~~e~~~ 139 (141)
+++++|+.+|.+++|+|+.+||+.++..++... ++.+++.
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~--~~~~~~~ 40 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDM--SDEESDE 40 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHS--THHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccc--cHHHHHH
Confidence 478999999999999999999999999999776 6655543
No 51
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.18 E-value=1.5e-06 Score=40.21 Aligned_cols=25 Identities=52% Similarity=0.821 Sum_probs=22.3
Q ss_pred HHhhcchhccCCCccccHHHHHHHH
Q 044803 99 LLEAFNVFDLNGDGFISCEELQNVL 123 (141)
Q Consensus 99 l~~~F~~~D~~~~g~I~~~e~~~~l 123 (141)
++.+|+.+|.|++|.||.+||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999999864
No 52
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.14 E-value=3.6e-06 Score=38.94 Aligned_cols=25 Identities=40% Similarity=0.785 Sum_probs=22.4
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHH
Q 044803 9 LQRIFKQLDKNGDDQVSLEELNWLL 33 (141)
Q Consensus 9 l~~~F~~~D~~~~g~i~~~e~~~~l 33 (141)
|+++|+.+|.|+||.|+..||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 5678999999999999999998864
No 53
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.13 E-value=1.9e-06 Score=52.43 Aligned_cols=46 Identities=17% Similarity=0.287 Sum_probs=40.3
Q ss_pred chHHHHHhhcchhcc-CCCccccHHHHHHHHHH-cCcCcCCCh-hHhhhcC
Q 044803 94 GEISDLLEAFNVFDL-NGDGFISCEELQNVLSR-LGLWDEKSG-KDCTRMI 141 (141)
Q Consensus 94 ~~~~~l~~~F~~~D~-~~~g~I~~~e~~~~l~~-~~~~~~~s~-~e~~~l~ 141 (141)
.....+..+|+.||. +++|+|+..||+.+++. +|..+ |+ ++++.||
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~l--s~~~~v~~mi 53 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLL--KDVEGLEEKM 53 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhc--cCHHHHHHHH
Confidence 446688999999999 99999999999999999 89888 88 8887764
No 54
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.07 E-value=2.8e-05 Score=58.83 Aligned_cols=89 Identities=24% Similarity=0.287 Sum_probs=51.8
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCCCCccccc
Q 044803 8 DLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKD 81 (141)
Q Consensus 8 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~ 81 (141)
....+|..+|.|.+|.+++.+|+.-+. -.+.++..+| ++|.|+..|....+...--.
T Consensus 52 ~~~~l~~~~d~~~dg~vDy~eF~~Y~~-----~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~------------ 114 (463)
T KOG0036|consen 52 AAKMLFSAMDANRDGRVDYSEFKRYLD-----NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQ------------ 114 (463)
T ss_pred HHHHHHHhcccCcCCcccHHHHHHHHH-----HhHHHHHHHHhhhccccCCccCHHHHHHHHHHhCCc------------
Confidence 345556666666666666666666665 2344444444 56666666666655543222
Q ss_pred cccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHH
Q 044803 82 EINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSR 125 (141)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~ 125 (141)
...+++..+|+..|+++++.|+.+|+++.+.-
T Consensus 115 ------------l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll 146 (463)
T KOG0036|consen 115 ------------LSDEKAAKFFEHMDKDGKATIDLEEWRDHLLL 146 (463)
T ss_pred ------------cCHHHHHHHHHHhccCCCeeeccHHHHhhhhc
Confidence 33555556666666666666666666665543
No 55
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.05 E-value=3.4e-05 Score=51.06 Aligned_cols=60 Identities=23% Similarity=0.428 Sum_probs=55.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHh
Q 044803 6 TADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKS 65 (141)
Q Consensus 6 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~ 65 (141)
...+..+|..||.+++|.|+.+.++.+|...|-+++.+++..++ ..|.++|..|+.++..
T Consensus 100 e~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 100 EEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 35688999999999999999999999999999999999999999 5799999999998873
No 56
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.05 E-value=1.8e-05 Score=60.19 Aligned_cols=92 Identities=26% Similarity=0.408 Sum_probs=70.0
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHh------CC----------CCC---HHHHHHHh----hCCCcCHHHHHHHH
Q 044803 7 ADLQRIFKQLDKNGDDQVSLEELNWLLERI------GV----------RLS---LEELESFV----GKSSLDLNEFLFFW 63 (141)
Q Consensus 7 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l------~~----------~~~---~~~~~~l~----~~g~i~~~ef~~~~ 63 (141)
..++-+|..||.|+||-|+.+||..+.+-. +. ... ..-+...+ +++++++++|+.+.
T Consensus 233 ~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~ 312 (489)
T KOG2643|consen 233 RNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQ 312 (489)
T ss_pred ccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHH
Confidence 345668999999999999999999887522 11 111 11123333 78999999999998
Q ss_pred HhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHc
Q 044803 64 KSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~ 126 (141)
.. ...+-++--|..+|+..+|.|+..+|..+|..+
T Consensus 313 e~----------------------------Lq~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~ 347 (489)
T KOG2643|consen 313 EN----------------------------LQEEILELEFERFDKGDSGAISEVDFAELLLAY 347 (489)
T ss_pred HH----------------------------HHHHHHHHHHHHhCcccccccCHHHHHHHHHHH
Confidence 87 445666777999999999999999999888775
No 57
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.02 E-value=5.8e-06 Score=50.25 Aligned_cols=46 Identities=15% Similarity=0.343 Sum_probs=39.8
Q ss_pred chHHHHHhhcchhc-cCCCc-cccHHHHHHHHHH-----cCcCcCCChhHhhhcC
Q 044803 94 GEISDLLEAFNVFD-LNGDG-FISCEELQNVLSR-----LGLWDEKSGKDCTRMI 141 (141)
Q Consensus 94 ~~~~~l~~~F~~~D-~~~~g-~I~~~e~~~~l~~-----~~~~~~~s~~e~~~l~ 141 (141)
.....+..+|+.|| .+++| .|+.+||+.+|+. +|... ++++++.+|
T Consensus 5 ~~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~--~~~~v~~~i 57 (88)
T cd05027 5 KAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIK--EQEVVDKVM 57 (88)
T ss_pred HHHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCC--CHHHHHHHH
Confidence 44668899999998 79999 6999999999999 78877 888888764
No 58
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.92 E-value=4.9e-05 Score=58.19 Aligned_cols=62 Identities=24% Similarity=0.436 Sum_probs=53.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHh----CCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhh
Q 044803 6 TADLQRIFKQLDKNGDDQVSLEELNWLLERI----GVRLSLEELESFV------GKSSLDLNEFLFFWKSIS 67 (141)
Q Consensus 6 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l----~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~ 67 (141)
...+..+|+.+|.|++|.|+.+||..+.+-+ +...+..++.++. ++|+|+++||+..+....
T Consensus 546 ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlvd 617 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLVD 617 (631)
T ss_pred hhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhhc
Confidence 4568899999999999999999999988865 4667788888877 899999999999887653
No 59
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.89 E-value=8.7e-05 Score=46.45 Aligned_cols=64 Identities=23% Similarity=0.396 Sum_probs=54.7
Q ss_pred CChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhh
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSIS 67 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~ 67 (141)
+|+.+.+.+..+|...|. .+|+|+..+...+|...+ ++.+.+..+| ++|.+++.||+..+..+.
T Consensus 4 ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 4 LSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp -SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 578899999999999985 589999999999987554 5578899999 899999999999887764
No 60
>PLN02964 phosphatidylserine decarboxylase
Probab=97.88 E-value=8.2e-05 Score=59.99 Aligned_cols=60 Identities=20% Similarity=0.316 Sum_probs=54.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhh
Q 044803 7 ADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSI 66 (141)
Q Consensus 7 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~ 66 (141)
..+.++|..+|.+++|.|+..||..++..++...+.+++..+| ++|.|+++|+..++...
T Consensus 179 ~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 179 SFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 4589999999999999999999999999998888899999999 78999999999988773
No 61
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=97.87 E-value=9.5e-05 Score=56.75 Aligned_cols=87 Identities=22% Similarity=0.360 Sum_probs=67.8
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh----------hCCCcCHHHHHHHHHhhhhhccCCCCCccccc
Q 044803 12 IFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV----------GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKD 81 (141)
Q Consensus 12 ~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~----------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~ 81 (141)
-|-.+|+|.+|.|+.++++..-.. -++..-+..+| .+|+++|++|+-++.+.-..
T Consensus 283 kFweLD~Dhd~lidk~~L~ry~d~---tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k------------ 347 (493)
T KOG2562|consen 283 KFWELDTDHDGLIDKEDLKRYGDH---TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDK------------ 347 (493)
T ss_pred HHhhhccccccccCHHHHHHHhcc---chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhccC------------
Confidence 366789999999999998773221 12344445555 68999999999988876443
Q ss_pred cccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHH
Q 044803 82 EINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSR 125 (141)
Q Consensus 82 ~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~ 125 (141)
.....+...|+.+|.+++|.++..|++.+...
T Consensus 348 ------------~t~~SleYwFrclDld~~G~Lt~~el~~fyee 379 (493)
T KOG2562|consen 348 ------------DTPASLEYWFRCLDLDGDGILTLNELRYFYEE 379 (493)
T ss_pred ------------CCccchhhheeeeeccCCCcccHHHHHHHHHH
Confidence 44667899999999999999999999977665
No 62
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.86 E-value=0.00025 Score=56.10 Aligned_cols=126 Identities=26% Similarity=0.335 Sum_probs=87.2
Q ss_pred CChhhHHHHHHHHHhhCCCCCCcccHHHHHHH-HHHhCCCCCHHHHHHHh-----------hCCCcCHHHHHHHHHhhhh
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQVSLEELNWL-LERIGVRLSLEELESFV-----------GKSSLDLNEFLFFWKSISK 68 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~-l~~l~~~~~~~~~~~l~-----------~~g~i~~~ef~~~~~~~~~ 68 (141)
|.+..+..|.++|...|.|+||.++-.|+..+ -++++-+++..++..+- ....++...|+.....+..
T Consensus 189 lkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfie 268 (625)
T KOG1707|consen 189 LKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFIE 268 (625)
T ss_pred ccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHHH
Confidence 45677899999999999999999999999775 34457777776666555 4567777777765544332
Q ss_pred hccCCCCCcccccc-------------------ccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcC
Q 044803 69 QNNNKVDDHEVKDE-------------------INGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLG 127 (141)
Q Consensus 69 ~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~ 127 (141)
.. ..+..|.++.+ ....-.-+......+.+...|..||.|+||.++.+|+..++...+
T Consensus 269 rg-r~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P 345 (625)
T KOG1707|consen 269 RG-RHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAP 345 (625)
T ss_pred hc-cccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCC
Confidence 21 11222222222 111122222334677889999999999999999999999999974
No 63
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.81 E-value=2e-05 Score=48.38 Aligned_cols=46 Identities=15% Similarity=0.324 Sum_probs=37.8
Q ss_pred chHHHHHhhcchhcc-CC-CccccHHHHHHHHHH-----cCcCcCCChhHhhhcC
Q 044803 94 GEISDLLEAFNVFDL-NG-DGFISCEELQNVLSR-----LGLWDEKSGKDCTRMI 141 (141)
Q Consensus 94 ~~~~~l~~~F~~~D~-~~-~g~I~~~e~~~~l~~-----~~~~~~~s~~e~~~l~ 141 (141)
.....+..+|..||. ++ +|.|+..||+.+|+. +|... ++++++.++
T Consensus 5 ~~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~--s~~ei~~~~ 57 (94)
T cd05031 5 HAMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQK--DPMAVDKIM 57 (94)
T ss_pred HHHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccc--cHHHHHHHH
Confidence 346789999999997 97 699999999999986 45566 888887663
No 64
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.80 E-value=6.7e-05 Score=41.18 Aligned_cols=50 Identities=24% Similarity=0.359 Sum_probs=42.4
Q ss_pred hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHH
Q 044803 50 GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVL 123 (141)
Q Consensus 50 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l 123 (141)
++|.|++.+|..++...... .....+..+|+.+|.+++|.|+.++|..++
T Consensus 13 ~~g~l~~~e~~~~l~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 13 GDGTISADELKAALKSLGEG------------------------LSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred CCCcCcHHHHHHHHHHhCCC------------------------CCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 67999999999988775422 457788889999999999999999998765
No 65
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.80 E-value=0.00015 Score=44.57 Aligned_cols=51 Identities=12% Similarity=0.098 Sum_probs=43.6
Q ss_pred hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHc
Q 044803 50 GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 50 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~ 126 (141)
++|.|+++++..++... . ...+.+..+|+.+|.+++|.|+.+||..++..+
T Consensus 23 ~~G~Is~~el~~~l~~~--~------------------------~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 23 QDGTVTGAQAKPILLKS--G------------------------LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred CCCeEeHHHHHHHHHHc--C------------------------CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 78999999999988662 1 335688999999999999999999999988874
No 66
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=97.76 E-value=0.00024 Score=54.28 Aligned_cols=119 Identities=20% Similarity=0.231 Sum_probs=70.0
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhC-CCCCHHH-----HHHHh--hCCCcCHHHHHHHHHhhhhhccCCCCCc-
Q 044803 7 ADLQRIFKQLDKNGDDQVSLEELNWLLERIG-VRLSLEE-----LESFV--GKSSLDLNEFLFFWKSISKQNNNKVDDH- 77 (141)
Q Consensus 7 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~-~~~~~~~-----~~~l~--~~g~i~~~ef~~~~~~~~~~~~~~~~~~- 77 (141)
.-++--|..+|+..+|.|+..+|..++-... .+..... ++.-+ .+..|++.||.++.....+-...+.+..
T Consensus 318 Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~~~gISl~Ef~~Ff~Fl~~l~dfd~Al~f 397 (489)
T KOG2643|consen 318 EILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDDGKGISLQEFKAFFRFLNNLNDFDIALRF 397 (489)
T ss_pred HHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3345558889998889999999988775442 2322111 11111 3678999999887665443322111100
Q ss_pred --------ccccc-ccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHc
Q 044803 78 --------EVKDE-INGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 78 --------~~~~~-~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~ 126 (141)
....- ..+..-- +.+.....+.-+|.+||.|+||.++.+||..++++.
T Consensus 398 y~~Ag~~i~~~~f~raa~~vt-GveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 398 YHMAGASIDEKTFQRAAKVVT-GVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred HHHcCCCCCHHHHHHHHHHhc-CcccccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 00000 0000000 111222356788999999999999999999999984
No 67
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.74 E-value=3.4e-05 Score=47.08 Aligned_cols=48 Identities=21% Similarity=0.405 Sum_probs=37.3
Q ss_pred chHHHHHhhcchhc-cCCCc-cccHHHHHHHHHH-cCcCc--CCChhHhhhcC
Q 044803 94 GEISDLLEAFNVFD-LNGDG-FISCEELQNVLSR-LGLWD--EKSGKDCTRMI 141 (141)
Q Consensus 94 ~~~~~l~~~F~~~D-~~~~g-~I~~~e~~~~l~~-~~~~~--~~s~~e~~~l~ 141 (141)
...+.++++|..|| .+++| .|+..||+.+|+. +|..+ .+++.+++.+|
T Consensus 6 ~~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~ 58 (92)
T cd05025 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIM 58 (92)
T ss_pred HHHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHH
Confidence 45678999999997 99999 5999999999986 55321 12777777664
No 68
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.74 E-value=0.00032 Score=54.56 Aligned_cols=97 Identities=20% Similarity=0.330 Sum_probs=72.5
Q ss_pred HHHHHHHHHhh---CCCCCCcccHHHHHHHHHHh-CCCCCHHHHHHHh-------hCCCcCHHHHHHHHHhhhhhccCCC
Q 044803 6 TADLQRIFKQL---DKNGDDQVSLEELNWLLERI-GVRLSLEELESFV-------GKSSLDLNEFLFFWKSISKQNNNKV 74 (141)
Q Consensus 6 ~~~l~~~F~~~---D~~~~g~i~~~e~~~~l~~l-~~~~~~~~~~~l~-------~~g~i~~~ef~~~~~~~~~~~~~~~ 74 (141)
..+++.+|-.+ +.++..+++.++|....-.+ +.+-...++..+. +||-|+|+||..+-...+
T Consensus 32 ~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~afe~~lC------- 104 (694)
T KOG0751|consen 32 PKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAFESVLC------- 104 (694)
T ss_pred hHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHHHhhcc-------
Confidence 45666666554 45777789999997764433 4443444555554 899999999998766655
Q ss_pred CCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcCc
Q 044803 75 DDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLGL 128 (141)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~~ 128 (141)
.+......+|..||..++|.+|.+++.+++.....
T Consensus 105 -------------------~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l 139 (694)
T KOG0751|consen 105 -------------------APDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNL 139 (694)
T ss_pred -------------------CchHHHHHHHHHhcccCCCceehHHHHHHHhcccc
Confidence 34557778999999999999999999999998754
No 69
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.69 E-value=0.00013 Score=44.28 Aligned_cols=58 Identities=21% Similarity=0.245 Sum_probs=45.3
Q ss_pred CCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcC
Q 044803 51 KSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLG 127 (141)
Q Consensus 51 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~ 127 (141)
+|.|+..++..++......... .......+..+|+.+|.+++|.|+.++|..++..+.
T Consensus 24 ~~~Is~~El~~ll~~~~g~~~t-------------------~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 24 PDTLYKKEFKQLVEKELPNFLK-------------------KEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred cccCCHHHHHHHHHHHhhHhhc-------------------cCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 5799999999999754433200 002378899999999999999999999999998763
No 70
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=97.68 E-value=0.00047 Score=45.39 Aligned_cols=98 Identities=15% Similarity=0.221 Sum_probs=69.1
Q ss_pred HHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh--------hCCCcCHHHHHHHHHhhhhhccCCCCCcccccccc
Q 044803 13 FKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV--------GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEIN 84 (141)
Q Consensus 13 F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~--------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (141)
-..|..|+.|.++.++|..+++.++-. ...+++... +++.|.-.+....+...-+..-
T Consensus 77 ~e~FSeDG~GnlsfddFlDmfSV~sE~-APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eL------------- 142 (189)
T KOG0038|consen 77 CEVFSEDGRGNLSFDDFLDMFSVFSEM-APRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDEL------------- 142 (189)
T ss_pred HHHhccCCCCcccHHHHHHHHHHHHhh-ChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccC-------------
Confidence 344678999999999999999866433 344444443 8899999998888877654430
Q ss_pred CCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcCcCc
Q 044803 85 GDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLGLWD 130 (141)
Q Consensus 85 ~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~ 130 (141)
..+...--+.++....|.+|+|.++.++|.+++.+...-+
T Consensus 143 ------s~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~raPDFl 182 (189)
T KOG0038|consen 143 ------SDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRAPDFL 182 (189)
T ss_pred ------CHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhCcchH
Confidence 0002233345566677999999999999999998765444
No 71
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.65 E-value=0.00083 Score=40.90 Aligned_cols=60 Identities=8% Similarity=0.248 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHH-h----CCCCCHHHHHHHh------hCCCcCHHHHHHHHHhh
Q 044803 6 TADLQRIFKQLDKNGDDQVSLEELNWLLER-I----GVRLSLEELESFV------GKSSLDLNEFLFFWKSI 66 (141)
Q Consensus 6 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~-l----~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~ 66 (141)
+..+..+|+.|..+ .+.++..||+.+++. + +-.-++..+..++ +||.|+|.||+..+..+
T Consensus 7 i~~lI~~FhkYaG~-~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 7 MEKMMLTFHKFAGE-KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHHHcCC-CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 45788899999844 679999999999864 2 3344677888888 89999999999988765
No 72
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.62 E-value=0.00031 Score=43.02 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=45.0
Q ss_pred hCC-CcCHHHHHHHHHhhhhhc-cCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcC
Q 044803 50 GKS-SLDLNEFLFFWKSISKQN-NNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLG 127 (141)
Q Consensus 50 ~~g-~i~~~ef~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~ 127 (141)
++| +|+..|+..++....... .. ......+..+++.+|.+++|.|+.+||..++..+.
T Consensus 24 gdg~~Is~~EL~~ll~~~~~~~~~~--------------------~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 24 GDRYKLSKGELKELLQRELTDFLSS--------------------QKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred CCCCEECHHHHHHHHHHHhHHhccc--------------------ccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 556 599999999987643211 00 03456899999999999999999999999998864
No 73
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.61 E-value=5.8e-05 Score=45.57 Aligned_cols=48 Identities=17% Similarity=0.340 Sum_probs=37.6
Q ss_pred chHHHHHhhcchhcc--CCCccccHHHHHHHHHH-cCcCc--CCChhHhhhcC
Q 044803 94 GEISDLLEAFNVFDL--NGDGFISCEELQNVLSR-LGLWD--EKSGKDCTRMI 141 (141)
Q Consensus 94 ~~~~~l~~~F~~~D~--~~~g~I~~~e~~~~l~~-~~~~~--~~s~~e~~~l~ 141 (141)
.....++.+|..||+ +++|.|+..+|..+++. +|.++ ..++.+++.++
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~ 57 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIM 57 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHH
Confidence 446678999999999 89999999999999986 56443 11577777653
No 74
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.58 E-value=0.00038 Score=54.35 Aligned_cols=68 Identities=18% Similarity=0.346 Sum_probs=58.1
Q ss_pred CChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCC---CHHHHHHHh------hCCCcCHHHHHHHHHhhhhh
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRL---SLEELESFV------GKSSLDLNEFLFFWKSISKQ 69 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~---~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~ 69 (141)
+|++++..++..|...| +++|+|+..++..++...+... ..++++.++ .+|+|+|++|+..+......
T Consensus 13 ~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~ 89 (627)
T KOG0046|consen 13 LTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSK 89 (627)
T ss_pred ccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhh
Confidence 57888999999999999 9999999999999999886554 478888888 78999999999977665543
No 75
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.50 E-value=0.00039 Score=44.35 Aligned_cols=55 Identities=18% Similarity=0.172 Sum_probs=44.8
Q ss_pred CHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccc
Q 044803 41 SLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFI 114 (141)
Q Consensus 41 ~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I 114 (141)
-...+...| ++|.|+.+|+..+. . . .....+...|..+|.|++|.|
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~--l--~------------------------~~e~~~~~f~~~~D~n~Dg~I 97 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR--L--D------------------------PNEHCIKPFFESCDLDKDGSI 97 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH--c--c------------------------chHHHHHHHHHHHCCCCCCCC
Confidence 345556666 89999999999765 1 1 346678899999999999999
Q ss_pred cHHHHHHHH
Q 044803 115 SCEELQNVL 123 (141)
Q Consensus 115 ~~~e~~~~l 123 (141)
|.+||...+
T Consensus 98 S~~Ef~~cl 106 (116)
T cd00252 98 SLDEWCYCF 106 (116)
T ss_pred CHHHHHHHH
Confidence 999999998
No 76
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.46 E-value=0.00065 Score=41.30 Aligned_cols=56 Identities=25% Similarity=0.361 Sum_probs=44.6
Q ss_pred CcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcC
Q 044803 53 SLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLG 127 (141)
Q Consensus 53 ~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~ 127 (141)
.|+..||..++....+..-. .......+..+++.+|.|++|.|+.+||..++..+.
T Consensus 27 ~Ls~~Elk~ll~~e~~~~~~-------------------~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 27 QLSKTEFLSFMNTELASFTK-------------------NQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred eECHHHHHHHHHHhhhHhhc-------------------CCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 89999999999887543200 003357889999999999999999999999988764
No 77
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.43 E-value=0.00044 Score=39.11 Aligned_cols=52 Identities=19% Similarity=0.192 Sum_probs=43.1
Q ss_pred hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcC
Q 044803 50 GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLG 127 (141)
Q Consensus 50 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~ 127 (141)
++|.|+.+++..++...- ...+.+..+|+.+|.+++|.|+.+||..++..+.
T Consensus 12 ~~G~i~~~el~~~l~~~g--------------------------~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 12 GDGLISGDEARPFLGKSG--------------------------LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred CCCcCcHHHHHHHHHHcC--------------------------CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 689999999998886531 2356789999999999999999999999887653
No 78
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.42 E-value=0.00023 Score=32.65 Aligned_cols=28 Identities=36% Similarity=0.713 Sum_probs=25.0
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHH
Q 044803 8 DLQRIFKQLDKNGDDQVSLEELNWLLER 35 (141)
Q Consensus 8 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~ 35 (141)
+++++|..+|.+++|.|+..+|..+++.
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 3678999999999999999999998874
No 79
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.37 E-value=0.0005 Score=41.72 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=44.4
Q ss_pred CCCcCHHHHHHHHHhhh--hhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcC
Q 044803 51 KSSLDLNEFLFFWKSIS--KQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLG 127 (141)
Q Consensus 51 ~g~i~~~ef~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~ 127 (141)
+|.|+..||..++.... ... ...+++.++|+.+|.+++|.|+..||..++..+.
T Consensus 26 ~g~Is~~EL~~~l~~~~~lg~k-----------------------~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 26 KNTLSKKELKELIQKELTIGSK-----------------------LQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred CCEECHHHHHHHHHHHHhcCCC-----------------------CCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHH
Confidence 56999999999996422 221 4578999999999999999999999999988763
No 80
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.27 E-value=0.00026 Score=32.47 Aligned_cols=27 Identities=48% Similarity=0.806 Sum_probs=24.5
Q ss_pred HHhhcchhccCCCccccHHHHHHHHHH
Q 044803 99 LLEAFNVFDLNGDGFISCEELQNVLSR 125 (141)
Q Consensus 99 l~~~F~~~D~~~~g~I~~~e~~~~l~~ 125 (141)
++.+|+.+|.+++|.|+..+|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567899999999999999999999875
No 81
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=97.24 E-value=0.00048 Score=46.57 Aligned_cols=117 Identities=13% Similarity=0.055 Sum_probs=74.5
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCC
Q 044803 7 ADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFVGKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGD 86 (141)
Q Consensus 7 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (141)
..|++-...||+|+||-|.+.|-...++++|+++.-+-+..++=.+.++|..--.. .+. +.-...+++..+....
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w----~p~-P~f~Iyi~nIhk~kHG 81 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSW----IPD-PFFRIYIKNIHKGKHG 81 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCC----CCC-CceeEEeecccccccC
Confidence 45677777899999999999999999999999987777666661112222111000 000 0001111222221111
Q ss_pred CCC----CCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcCc
Q 044803 87 DNE----NDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLGL 128 (141)
Q Consensus 87 ~~~----~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~~ 128 (141)
.+. ....-..++..++|.+|+..+.+.+|..|+..+++.-..
T Consensus 82 SDSg~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~ 127 (174)
T PF05042_consen 82 SDSGAYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNRN 127 (174)
T ss_pred CCccccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccc
Confidence 111 123356889999999999989999999999999988543
No 82
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.22 E-value=0.00096 Score=36.03 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=27.5
Q ss_pred chHHHHHhhcchhccCCCccccHHHHHHHHHHc
Q 044803 94 GEISDLLEAFNVFDLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 94 ~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~ 126 (141)
.....+..+|+..|++++|.+..+||..+.+.+
T Consensus 18 ~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 18 MDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp --HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 557889999999999999999999999988754
No 83
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.17 E-value=0.0014 Score=50.16 Aligned_cols=53 Identities=19% Similarity=0.159 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh---hCCCcCHHHHHHHHHhhhh
Q 044803 6 TADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV---GKSSLDLNEFLFFWKSISK 68 (141)
Q Consensus 6 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~---~~g~i~~~ef~~~~~~~~~ 68 (141)
...+..+|+.+|.+++|.|+..||.. ...+-..+ ++|.|+++||...+....+
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~----------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG----------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH----------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 46789999999999999999999842 12222222 8999999999999887653
No 84
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=97.09 E-value=0.0043 Score=50.51 Aligned_cols=106 Identities=21% Similarity=0.332 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCCCCcc
Q 044803 5 HTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKVDDHE 78 (141)
Q Consensus 5 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 78 (141)
...-+..+|+..|++++|.++..+...+++.++..+....+..++ +++++...+|..+......
T Consensus 134 ~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~---------- 203 (746)
T KOG0169|consen 134 REHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTK---------- 203 (746)
T ss_pred HHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhcc----------
Confidence 345688899999999999999999999999999999988888888 7899999999988776532
Q ss_pred ccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcC-c-CcCCChhHhhhc
Q 044803 79 VKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLG-L-WDEKSGKDCTRM 140 (141)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~-~-~~~~s~~e~~~l 140 (141)
.. ++..+|..+-.+ .++++.++|..+|.... . .. +.+.++++
T Consensus 204 ----------------rp-ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~--~~~~ae~i 247 (746)
T KOG0169|consen 204 ----------------RP-EVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGA--TLDEAEEI 247 (746)
T ss_pred ----------------Cc-hHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccc--cHHHHHHH
Confidence 23 888888888544 89999999999999873 3 34 66666554
No 85
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.82 E-value=0.0005 Score=43.67 Aligned_cols=57 Identities=21% Similarity=0.201 Sum_probs=39.7
Q ss_pred hhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHH
Q 044803 3 PLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLF 61 (141)
Q Consensus 3 ~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~ 61 (141)
+.....+...|..+|.|+||.|+..|+..+...+ .+...-+..++ +++.|++.||..
T Consensus 50 ~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 50 SECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3456678889999999999999999998876544 34444455555 799999999975
No 86
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=96.78 E-value=0.002 Score=44.65 Aligned_cols=37 Identities=32% Similarity=0.548 Sum_probs=33.0
Q ss_pred chHHHHHhhcchhccCCCccccHHHHHHHHHHcCcCc
Q 044803 94 GEISDLLEAFNVFDLNGDGFISCEELQNVLSRLGLWD 130 (141)
Q Consensus 94 ~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~ 130 (141)
.....+...|+.||.+.||+|+..||+.+|..+|.+-
T Consensus 96 kqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQ 132 (244)
T KOG0041|consen 96 KQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQ 132 (244)
T ss_pred HHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCch
Confidence 3456778899999999999999999999999999875
No 87
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.77 E-value=0.0055 Score=33.09 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=30.3
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHh
Q 044803 24 VSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKS 65 (141)
Q Consensus 24 i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~ 65 (141)
++..|++.+|+.+++.++..-+..+| ++|.+..+||..++..
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 67788888888888888888888888 6788888888877654
No 88
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.65 E-value=0.0072 Score=36.83 Aligned_cols=59 Identities=10% Similarity=0.101 Sum_probs=46.1
Q ss_pred hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcC
Q 044803 50 GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLG 127 (141)
Q Consensus 50 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~ 127 (141)
..++++..||...+..-++..-. . ......+.++++.+|.|+||.|+..||..++..+.
T Consensus 20 ~~~tLsk~Elk~Ll~~Elp~~l~-------------~------~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 20 EKNYLNRDDLQKLMEKEFSEFLK-------------N------QNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred CCCcCCHHHHHHHHHHHhHHHHc-------------C------CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHH
Confidence 45689999999998776654210 0 03467899999999999999999999999988763
No 89
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.61 E-value=0.0062 Score=43.65 Aligned_cols=61 Identities=20% Similarity=0.348 Sum_probs=39.7
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHH-h--CCCCCHHHHHHHh------hCCCcCHHHHHHHHHh
Q 044803 5 HTADLQRIFKQLDKNGDDQVSLEELNWLLER-I--GVRLSLEELESFV------GKSSLDLNEFLFFWKS 65 (141)
Q Consensus 5 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~-l--~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~ 65 (141)
....+..+|.+-|.|-+|+|+..++++++.. . ++.-+.++-...| ++|.|+|++|...+..
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFla 168 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLA 168 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHh
Confidence 3457888888888888888888888776542 2 2222222333333 7888888888665544
No 90
>PF14658 EF-hand_9: EF-hand domain
Probab=96.44 E-value=0.01 Score=33.88 Aligned_cols=53 Identities=13% Similarity=0.379 Sum_probs=45.6
Q ss_pred hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCC-ccccHHHHHHHHHH
Q 044803 50 GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGD-GFISCEELQNVLSR 125 (141)
Q Consensus 50 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~-g~I~~~e~~~~l~~ 125 (141)
+.|.|.-.+++.++.+.-... ....+++.+.+.+|+++. |.|+.+.|..+|+.
T Consensus 11 ~tG~V~v~~l~~~Lra~~~~~-----------------------p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 11 KTGRVPVSDLITYLRAVTGRS-----------------------PEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred CCceEeHHHHHHHHHHHcCCC-----------------------CcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 678899999998888875533 567799999999999999 99999999999975
No 91
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.41 E-value=0.024 Score=33.63 Aligned_cols=58 Identities=24% Similarity=0.390 Sum_probs=48.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhC-C-CCCHHHHHHHh----------hCCCcCHHHHHHHHHhh
Q 044803 8 DLQRIFKQLDKNGDDQVSLEELNWLLERIG-V-RLSLEELESFV----------GKSSLDLNEFLFFWKSI 66 (141)
Q Consensus 8 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~-~-~~~~~~~~~l~----------~~g~i~~~ef~~~~~~~ 66 (141)
++..+|..+.. +.+.|+.++|..+|..-. . ..+..++..++ ..+.+++..|..++...
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 57889999966 789999999999998763 2 45788998888 47899999999998764
No 92
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=96.35 E-value=0.01 Score=44.17 Aligned_cols=96 Identities=8% Similarity=0.009 Sum_probs=71.3
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHH-HHHHh------hCCCcCHHHHHHHHHhhhhhccCCCCCccc
Q 044803 7 ADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEE-LESFV------GKSSLDLNEFLFFWKSISKQNNNKVDDHEV 79 (141)
Q Consensus 7 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~-~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~ 79 (141)
..++..|..||.+.+|.+++.+-...+.-++-++...+ |+-.+ .||.++-.+|..++.......
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~--------- 329 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVE--------- 329 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcc---------
Confidence 45778899999999999999998887877755554444 44444 688888877777776654322
Q ss_pred cccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcC
Q 044803 80 KDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLG 127 (141)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~ 127 (141)
.-.+--.|...+...+|.|+.++|+.++...+
T Consensus 330 ----------------~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~~p 361 (412)
T KOG4666|consen 330 ----------------VLRVPVLFPSIEQKDDPKIYASNFRKFAATEP 361 (412)
T ss_pred ----------------eeeccccchhhhcccCcceeHHHHHHHHHhCc
Confidence 33455678899999999999999999887754
No 93
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=96.11 E-value=0.022 Score=43.77 Aligned_cols=26 Identities=38% Similarity=0.521 Sum_probs=21.3
Q ss_pred HhhcchhccCCCccccHHHHHHHHHH
Q 044803 100 LEAFNVFDLNGDGFISCEELQNVLSR 125 (141)
Q Consensus 100 ~~~F~~~D~~~~g~I~~~e~~~~l~~ 125 (141)
..+|..+|.|++|.|+.+||..++..
T Consensus 360 ~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 360 DAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 45688888888889999888888765
No 94
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.05 E-value=0.037 Score=35.13 Aligned_cols=51 Identities=25% Similarity=0.270 Sum_probs=41.0
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhC----------CCCCHHHHHHHh----------hCCCcCHHHHHH
Q 044803 11 RIFKQLDKNGDDQVSLEELNWLLERIG----------VRLSLEELESFV----------GKSSLDLNEFLF 61 (141)
Q Consensus 11 ~~F~~~D~~~~g~i~~~e~~~~l~~l~----------~~~~~~~~~~l~----------~~g~i~~~ef~~ 61 (141)
+.|...|.|++|+++--|+..++.... .-+++.++..++ ++|.|+|-||+.
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK 141 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLK 141 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHh
Confidence 457788999999999999988887551 224667777777 899999999986
No 95
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=95.93 E-value=0.02 Score=41.12 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=28.2
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh
Q 044803 8 DLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV 49 (141)
Q Consensus 8 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (141)
+-+--|+..|+|++|.|++++++--+....-. +..+....+
T Consensus 141 eSkthFraVDpdgDGhvsWdEykvkFlaskgh-sekevadai 181 (362)
T KOG4251|consen 141 ESKTHFRAVDPDGDGHVSWDEYKVKFLASKGH-SEKEVADAI 181 (362)
T ss_pred hhhhheeeeCCCCCCceehhhhhhHHHhhcCc-chHHHHHHh
Confidence 34456778899999999999998877654443 444443333
No 96
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=95.91 E-value=0.031 Score=34.97 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=41.5
Q ss_pred hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHc
Q 044803 50 GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 50 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~ 126 (141)
++|.|+-.+-..++...- ...+.+..+|...|.+++|.++.+||.-++.-+
T Consensus 22 ~~g~isg~~a~~~f~~S~--------------------------L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 22 QDGKISGDQAREFFMKSG--------------------------LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp STTEEEHHHHHHHHHHTT--------------------------SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred CCCeEeHHHHHHHHHHcC--------------------------CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 678899988887665432 567899999999999999999999999877654
No 97
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.49 E-value=0.047 Score=43.61 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=62.4
Q ss_pred CChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhc
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQN 70 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~ 70 (141)
|++++....+..|..+|.++.|+++..+...+|+..+.+.+.+.+.++. ..|.+...+|..+++......
T Consensus 587 ~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g~ 662 (680)
T KOG0042|consen 587 LTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNGC 662 (680)
T ss_pred cCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcCC
Confidence 5788899999999999999999999999999999999888888887777 489999999999998876553
No 98
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=95.12 E-value=0.14 Score=43.07 Aligned_cols=96 Identities=20% Similarity=0.122 Sum_probs=77.1
Q ss_pred ChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCH-HHHH----HHh------hCCCcCHHHHHHHHHhhhhhc
Q 044803 2 CPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSL-EELE----SFV------GKSSLDLNEFLFFWKSISKQN 70 (141)
Q Consensus 2 s~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~-~~~~----~l~------~~g~i~~~ef~~~~~~~~~~~ 70 (141)
|+....+++..|+.+++...|..+.+++...|-.+|++.-. +++- .++ ..|.++|.+|...+..-....
T Consensus 742 sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e~l 821 (890)
T KOG0035|consen 742 SQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYEDL 821 (890)
T ss_pred hHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhhhh
Confidence 45567899999999999999999999999999989988764 2222 233 337899999999999877665
Q ss_pred cCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHH
Q 044803 71 NNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQN 121 (141)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~ 121 (141)
.....+..+|+.+-++.. ++..+||..
T Consensus 822 -----------------------~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 822 -----------------------DTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred -----------------------cHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 678888899998866554 889998887
No 99
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=94.70 E-value=0.21 Score=44.33 Aligned_cols=73 Identities=15% Similarity=0.177 Sum_probs=50.8
Q ss_pred hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcCcC
Q 044803 50 GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLGLW 129 (141)
Q Consensus 50 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~ 129 (141)
.+|.+++.+|..++.+.--.. .+...+ .+...+..+....|++.+|+|+..++..+|-.-.-.
T Consensus 2266 k~G~Ldhq~F~sCLrslgY~l-------------pmvEe~----~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETe 2328 (2399)
T KOG0040|consen 2266 KNGRLDHQHFKSCLRSLGYDL-------------PMVEEG----EPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKETE 2328 (2399)
T ss_pred hccCCcHHHHHHHHHhcCCCC-------------cccccC----CCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcccc
Confidence 789999999999988753221 000100 344578888999999999999999999988765321
Q ss_pred cCCChhHhhh
Q 044803 130 DEKSGKDCTR 139 (141)
Q Consensus 130 ~~~s~~e~~~ 139 (141)
-.+|.++|+.
T Consensus 2329 NI~s~~eIE~ 2338 (2399)
T KOG0040|consen 2329 NILSSEEIED 2338 (2399)
T ss_pred cccchHHHHH
Confidence 1135666664
No 100
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=94.33 E-value=0.036 Score=41.32 Aligned_cols=56 Identities=18% Similarity=0.143 Sum_probs=49.6
Q ss_pred hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHc-Cc
Q 044803 50 GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRL-GL 128 (141)
Q Consensus 50 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~ 128 (141)
++|.++|.+.+..+...+... ...+-++-+|++|+.+-||.++.++|..+++.. |+
T Consensus 272 ~tg~~D~re~v~~lavlc~p~-----------------------~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv 328 (412)
T KOG4666|consen 272 TTGNGDYRETVKTLAVLCGPP-----------------------VTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGV 328 (412)
T ss_pred CCCcccHHHHhhhheeeeCCC-----------------------CcHHHHHHHHHhcccccccccchHHHHHHHHHhcCc
Confidence 889999999999888877654 678899999999999999999999999999884 54
No 101
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=93.89 E-value=0.33 Score=39.08 Aligned_cols=65 Identities=25% Similarity=0.297 Sum_probs=47.8
Q ss_pred CChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCC----HHHHHHHhhCCCcCHHHHHHHHHh
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLS----LEELESFVGKSSLDLNEFLFFWKS 65 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~----~~~~~~l~~~g~i~~~ef~~~~~~ 65 (141)
||+.-+.-+..+|..||.|+||-++..|+..+++..+-.+. ..+.-..-..|.++|.-|+..++.
T Consensus 309 Ls~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t~~~~~G~ltl~g~l~~WsL 377 (625)
T KOG1707|consen 309 LSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDSTVKNERGWLTLNGFLSQWSL 377 (625)
T ss_pred ccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccceecccceeehhhHHHHHHH
Confidence 45666778999999999999999999999999998754441 111111116788999888876554
No 102
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=92.39 E-value=0.18 Score=29.77 Aligned_cols=41 Identities=17% Similarity=0.377 Sum_probs=32.3
Q ss_pred HHHhhcchhccCCCccccHHHHHHHHHHc-Cc-CcCCChhHhhhcC
Q 044803 98 DLLEAFNVFDLNGDGFISCEELQNVLSRL-GL-WDEKSGKDCTRMI 141 (141)
Q Consensus 98 ~l~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~-~~~~s~~e~~~l~ 141 (141)
++..+|+.|-. +.+.+|.++|..+|..- +. .+ +.+++..+|
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~--~~~~~~~li 43 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRL--TDEQAKELI 43 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTS--SHHHHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccC--cHHHHHHHH
Confidence 46788999955 89999999999999875 65 45 888887664
No 103
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=92.32 E-value=0.93 Score=35.54 Aligned_cols=99 Identities=14% Similarity=0.195 Sum_probs=70.7
Q ss_pred HHHHHHH----hhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCCCCc
Q 044803 8 DLQRIFK----QLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKVDDH 77 (141)
Q Consensus 8 ~l~~~F~----~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~~~~ 77 (141)
=+.++|. .+-...+|.+++++|..++-++...-+..-+.-.| ++|-++-.+.-.+....+..-.
T Consensus 312 ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~------ 385 (493)
T KOG2562|consen 312 IVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRME------ 385 (493)
T ss_pred HHHHHHhhccccceeeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHH------
Confidence 3677887 44457789999999999988775554555455444 8999999998777776654320
Q ss_pred cccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHH
Q 044803 78 EVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQN 121 (141)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~ 121 (141)
...-.+...++.+-++|.+.-+...|.||..+|+.
T Consensus 386 ---------~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 386 ---------CMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred ---------hcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 01112225677777889999888899999999986
No 104
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.80 E-value=0.83 Score=36.28 Aligned_cols=66 Identities=17% Similarity=0.244 Sum_probs=55.1
Q ss_pred CChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhh
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSISK 68 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~ 68 (141)
+++++.+.+-.-|+..-.|-.|+|+-.--+.++.... +.-.++..+| .||-+++.||+..+..+..
T Consensus 225 IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHLVVa 296 (737)
T KOG1955|consen 225 ITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHLVVA 296 (737)
T ss_pred cCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhheee
Confidence 4677888888889989899999999998888887544 4567888888 8999999999998887654
No 105
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=90.78 E-value=0.48 Score=35.82 Aligned_cols=61 Identities=21% Similarity=0.358 Sum_probs=49.1
Q ss_pred hhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhh
Q 044803 3 PLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSIS 67 (141)
Q Consensus 3 ~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~ 67 (141)
|...-++..+|+++|.|.||.++..|+..+ ...-.+.-|+.++ .+|.|+-.||...+....
T Consensus 246 p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I----~ldknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 246 PICKDSLGWMFNKLDTNYDLLLDQSELRAI----ELDKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred cchhhhhhhhhhccccccccccCHHHhhhh----hccCchhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 445678899999999999999999998774 4445667777777 899999999988776543
No 106
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.52 E-value=0.77 Score=38.33 Aligned_cols=61 Identities=21% Similarity=0.318 Sum_probs=50.0
Q ss_pred hhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhh
Q 044803 4 LHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSI 66 (141)
Q Consensus 4 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~ 66 (141)
-+..++..+|+.+|+..+|+++-.+-..+|-. -+++...+..+| +||+++-+||+-.+..+
T Consensus 192 ~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~q--S~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~li 258 (1118)
T KOG1029|consen 192 HNKLKYRQLFNALDKTRSGYLSGQQARSALGQ--SGLPQNQLAHIWTLSDVDGDGKLSADEFILAMHLI 258 (1118)
T ss_pred hhhhHHHHHhhhcccccccccccHHHHHHHHh--cCCchhhHhhheeeeccCCCCcccHHHHHHHHHHH
Confidence 34567889999999999999999998887753 445677888888 89999999998765554
No 107
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=90.04 E-value=2.9 Score=25.40 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=39.3
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHh-----------CCCCCHHHHHHHh----hCCCcCHHHHHHHHHh
Q 044803 7 ADLQRIFKQLDKNGDDQVSLEELNWLLERI-----------GVRLSLEELESFV----GKSSLDLNEFLFFWKS 65 (141)
Q Consensus 7 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l-----------~~~~~~~~~~~l~----~~g~i~~~ef~~~~~~ 65 (141)
.+++.+|+.+ .|++|.++...|...|+.+ .++..+.-++.-| .+..|+.++|+..+..
T Consensus 3 dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~~~~~I~~~~Fl~wl~~ 75 (90)
T PF09069_consen 3 DKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQLSPKITENQFLDWLMS 75 (90)
T ss_dssp HHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTTT-S-B-HHHHHHHHHT
T ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccCCCCccCHHHHHHHHHh
Confidence 5788899988 7889999999999988854 2344566666666 3789999999998875
No 108
>PLN02952 phosphoinositide phospholipase C
Probab=89.86 E-value=0.86 Score=37.12 Aligned_cols=66 Identities=17% Similarity=0.297 Sum_probs=47.8
Q ss_pred hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHc-Cc
Q 044803 50 GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRL-GL 128 (141)
Q Consensus 50 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~ 128 (141)
+.|.++|++|..+...+..... ....++..+|..|-. +.+.++.++|..+|... +.
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~----------------------~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~Q~e 69 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEA----------------------EPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLHQDE 69 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccC----------------------CChHHHHHHHHHHhC-CCCccCHHHHHHHHHHhCCC
Confidence 4579999999887776542210 457899999999954 44789999999999996 44
Q ss_pred C-cCCChhHhhhc
Q 044803 129 W-DEKSGKDCTRM 140 (141)
Q Consensus 129 ~-~~~s~~e~~~l 140 (141)
. . +.+++..|
T Consensus 70 ~~~--~~~~~~~i 80 (599)
T PLN02952 70 LDC--TLAEAQRI 80 (599)
T ss_pred cCC--CHHHHHHH
Confidence 3 4 65555443
No 109
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=89.73 E-value=0.29 Score=28.25 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=25.5
Q ss_pred chHHHHHhhcchhccCCCccccHHHHHHHHH
Q 044803 94 GEISDLLEAFNVFDLNGDGFISCEELQNVLS 124 (141)
Q Consensus 94 ~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~ 124 (141)
...+.+..+|+.+ .++.++||.++|++.|.
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 3467899999999 78889999999998863
No 110
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=89.62 E-value=0.55 Score=38.21 Aligned_cols=45 Identities=13% Similarity=0.160 Sum_probs=38.1
Q ss_pred hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHH
Q 044803 50 GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEEL 119 (141)
Q Consensus 50 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~ 119 (141)
.+|.++|.+++..+...+.. ...+.+.-.|+.||++++ ....++.
T Consensus 568 ~~g~Ltf~~lv~gL~~l~~~------------------------~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 568 MTGLLTFKDLVSGLSILKAG------------------------DALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred CcceeEHHHHHHHHHHHHhh------------------------hHHHHHHHHHhhccCCcc-ccccccc
Confidence 78999999999999988776 567888889999998888 7777776
No 111
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=89.06 E-value=2.3 Score=27.52 Aligned_cols=88 Identities=23% Similarity=0.180 Sum_probs=45.9
Q ss_pred ccHHHHHHHHHHhCCCCCHHHHHHHhhCCCcCHHHHHHHHHhhhhhccCC-CCCccccccccCCCCCCCCcchHHHHHhh
Q 044803 24 VSLEELNWLLERIGVRLSLEELESFVGKSSLDLNEFLFFWKSISKQNNNK-VDDHEVKDEINGDDNENDDDGEISDLLEA 102 (141)
Q Consensus 24 i~~~e~~~~l~~l~~~~~~~~~~~l~~~g~i~~~ef~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 102 (141)
|+...+..+++..|.+.. .+..++..+...++..++.....+ ...+..+.+ .-.....--+..+
T Consensus 38 v~l~~v~~~f~~~~l~~~--------~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~-------~v~~a~~L~ln~L 102 (127)
T PF09068_consen 38 VDLSNVIEAFREHGLNQS--------NDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSR-------PVDLAVDLLLNWL 102 (127)
T ss_dssp --HHHHHHHHHHTT---T---------TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH------------HHHHHHHHHH
T ss_pred eeHHHHHHHHHHcCCCcc--------cCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCch-------hHHHHHHHHHHHH
Confidence 444444444444444432 356689999888888877321100 000100000 0000334457788
Q ss_pred cchhccCCCccccHHHHHHHHHHc
Q 044803 103 FNVFDLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 103 F~~~D~~~~g~I~~~e~~~~l~~~ 126 (141)
+..||++++|.|+.-.++.+|..+
T Consensus 103 l~vyD~~rtG~I~vls~KvaL~~L 126 (127)
T PF09068_consen 103 LNVYDSQRTGKIRVLSFKVALITL 126 (127)
T ss_dssp HHHH-TT--SEEEHHHHHHHHHHT
T ss_pred HHHhCCCCCCeeehhHHHHHHHHh
Confidence 999999999999999999988654
No 112
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.00 E-value=0.47 Score=36.17 Aligned_cols=39 Identities=28% Similarity=0.481 Sum_probs=34.3
Q ss_pred CcchHHHHHhhcchhccCCCccccHHHHHHHHHHcCcCc
Q 044803 92 DDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLGLWD 130 (141)
Q Consensus 92 ~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~ 130 (141)
++...+.++++|..+|+.++|+|+..-++.++...+..+
T Consensus 304 ~~~~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~v 342 (449)
T KOG2871|consen 304 PENPSEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLV 342 (449)
T ss_pred CCCCCHHHHhhhhccCccCCCeeecHHHHHHHHHhcccc
Confidence 335688999999999999999999999999999988555
No 113
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.69 E-value=0.92 Score=37.92 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=25.5
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 044803 8 DLQRIFKQLDKNGDDQVSLEELNWLLERI 36 (141)
Q Consensus 8 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~l 36 (141)
-|..||.+-|.|+||.++..||..+|+-+
T Consensus 50 VLaqIWALsDldkDGrmdi~EfSIAmkLi 78 (1118)
T KOG1029|consen 50 VLAQIWALSDLDKDGRMDIREFSIAMKLI 78 (1118)
T ss_pred HHHHHHHhhhcCccccchHHHHHHHHHHH
Confidence 46788999999999999999999988854
No 114
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=88.56 E-value=3.1 Score=27.82 Aligned_cols=61 Identities=15% Similarity=0.369 Sum_probs=45.4
Q ss_pred HHHHHhh---CCCCCCcccHHHHHHHHHHhC---CCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhc
Q 044803 10 QRIFKQL---DKNGDDQVSLEELNWLLERIG---VRLSLEELESFV------GKSSLDLNEFLFFWKSISKQN 70 (141)
Q Consensus 10 ~~~F~~~---D~~~~g~i~~~e~~~~l~~l~---~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~ 70 (141)
+.+|..| -+.+...++...|..+++..+ ..++..++.-+| +..+|+|++|+..+..+....
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~ 74 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKK 74 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHh
Confidence 4455554 456677899999999999874 447888888888 345699999999998776554
No 115
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=88.07 E-value=0.24 Score=37.17 Aligned_cols=62 Identities=16% Similarity=0.176 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHH-HHHHh------hCCCcCHHHHHHHHHhhh
Q 044803 6 TADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEE-LESFV------GKSSLDLNEFLFFWKSIS 67 (141)
Q Consensus 6 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~-~~~l~------~~g~i~~~ef~~~~~~~~ 67 (141)
..-+...|..+|+|.++-|...|++.+=+-+-.-..... .+.++ +|.+|++.|+...+....
T Consensus 332 eRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~ 400 (421)
T KOG4578|consen 332 ERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEK 400 (421)
T ss_pred hheeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhhcccc
Confidence 345667799999999999999998876554322222223 33333 899999999999887643
No 116
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.70 E-value=0.81 Score=36.33 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=29.0
Q ss_pred hHHHHHHHHHhhCCCCCCcccHHHHHHHHHHh
Q 044803 5 HTADLQRIFKQLDKNGDDQVSLEELNWLLERI 36 (141)
Q Consensus 5 ~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l 36 (141)
-+.+|.+||.+.|-++||.++..||+.++.-+
T Consensus 263 pi~ELshIWeLsD~d~DGALtL~EFcAAfHLV 294 (737)
T KOG1955|consen 263 PIEELSHIWELSDVDRDGALTLSEFCAAFHLV 294 (737)
T ss_pred chHHHHHHHhhcccCccccccHHHHHhhHhhe
Confidence 46789999999999999999999999998844
No 117
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.15 E-value=5.8 Score=25.40 Aligned_cols=70 Identities=20% Similarity=0.213 Sum_probs=43.0
Q ss_pred CCCHHHHHHHh-------hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHH----HHhhcchhc
Q 044803 39 RLSLEELESFV-------GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISD----LLEAFNVFD 107 (141)
Q Consensus 39 ~~~~~~~~~l~-------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~~F~~~D 107 (141)
.++.++++-.. +++.++=-|.+..+....... .++..+++- +.+.+ +..+.+--|
T Consensus 62 ~mtpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h--~~ghep~Pl------------~sE~Ele~~iD~vL~DdD 127 (144)
T KOG4065|consen 62 KMTPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAH--DSGHEPVPL------------SSEAELERLIDAVLDDDD 127 (144)
T ss_pred hCCHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhh--hcCCCCCCC------------CCHHHHHHHHHHHhcccc
Confidence 35667666554 778888888887777665422 111111111 33333 334556668
Q ss_pred cCCCccccHHHHHHH
Q 044803 108 LNGDGFISCEELQNV 122 (141)
Q Consensus 108 ~~~~g~I~~~e~~~~ 122 (141)
.|++|+|+..||...
T Consensus 128 fN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 128 FNGDGVIDYGEFLKR 142 (144)
T ss_pred cCCCceeeHHHHHhh
Confidence 999999999999754
No 118
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=85.31 E-value=1.3 Score=25.54 Aligned_cols=52 Identities=13% Similarity=-0.020 Sum_probs=35.1
Q ss_pred CCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHc-CcCc
Q 044803 52 SSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRL-GLWD 130 (141)
Q Consensus 52 g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~~~ 130 (141)
..++|.-.+..+...++. ..+..+...|+.=+.+.|+++||...++.+ |..+
T Consensus 7 p~~~F~~L~~~l~~~l~~---------------------------~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD~l 59 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHLPP---------------------------SKMDLLQKHYEEFKKKKISREEFVRKLRQIVGDQL 59 (70)
T ss_pred CcccHHHHHHHHHHHCCH---------------------------HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 346677666666666543 344444445545578899999999999987 6543
No 119
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.90 E-value=8.5 Score=25.46 Aligned_cols=88 Identities=17% Similarity=0.211 Sum_probs=63.6
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHh--CCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCCCCcccccc
Q 044803 11 RIFKQLDKNGDDQVSLEELNWLLERI--GVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDE 82 (141)
Q Consensus 11 ~~F~~~D~~~~g~i~~~e~~~~l~~l--~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~ 82 (141)
-.|+.+ +-||.++..|...+.+-+ .++++.+++..++ +...++|-.|.+.+...+...
T Consensus 34 Llf~Vm--~ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~e------------ 99 (148)
T COG4103 34 LLFHVM--EADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDEE------------ 99 (148)
T ss_pred HHHHHH--hcccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCHH------------
Confidence 456655 456788888876654433 6888999999988 667899999999998776554
Q ss_pred ccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHH
Q 044803 83 INGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSR 125 (141)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~ 125 (141)
...+-+.-.+.+...| |.++.-|-.-+++.
T Consensus 100 -----------~R~eli~~mweIa~AD--g~l~e~Ed~vi~Rv 129 (148)
T COG4103 100 -----------QRLELIGLMWEIAYAD--GELDESEDHVIWRV 129 (148)
T ss_pred -----------HHHHHHHHHHHHHHcc--ccccHHHHHHHHHH
Confidence 6677777777776554 56777776655554
No 120
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.58 E-value=0.52 Score=39.99 Aligned_cols=65 Identities=23% Similarity=0.347 Sum_probs=54.4
Q ss_pred CChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhh
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSIS 67 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~ 67 (141)
+++.+...+.++|...|.+++|+|+..+....+.. .+++...+...| +.+.+++.+|...+..+.
T Consensus 277 vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~--~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 277 VSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLP--FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred cChHHHHHHHHHHHhccccCCCccccccccccccc--CCCChhhhhhhhhhcchhccCcccccccchhhhhhh
Confidence 46778889999999999999999999999988864 777778888888 789999998877665543
No 121
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=84.44 E-value=6.9 Score=28.65 Aligned_cols=49 Identities=14% Similarity=0.243 Sum_probs=34.0
Q ss_pred CCCCcccHHHHHHHHHHh--CCCCCHHH---HHHHh---hCCCcCHHHHHHHHHhhhh
Q 044803 19 NGDDQVSLEELNWLLERI--GVRLSLEE---LESFV---GKSSLDLNEFLFFWKSISK 68 (141)
Q Consensus 19 ~~~g~i~~~e~~~~l~~l--~~~~~~~~---~~~l~---~~g~i~~~ef~~~~~~~~~ 68 (141)
..||.|+..|+. ..+.+ .++++.++ +..++ .....++.+|+..+...+.
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~k~~~~~l~~~~~~~~~~~~ 123 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREGKEPDFPLREKLRQFRSVCG 123 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhc
Confidence 558999999998 44544 34555555 66677 4556789999988877653
No 122
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=83.89 E-value=3.1 Score=24.23 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=31.1
Q ss_pred CCCCcccHHHHHHHHHHh---------CCCCCHHHHHHHhhCCCcCHHHH
Q 044803 19 NGDDQVSLEELNWLLERI---------GVRLSLEELESFVGKSSLDLNEF 59 (141)
Q Consensus 19 ~~~g~i~~~e~~~~l~~l---------~~~~~~~~~~~l~~~g~i~~~ef 59 (141)
-..|.+..+||..++.+. ..+.+..+++++..+|+|+-++|
T Consensus 26 ~~~Gkv~~ee~n~~~e~~p~~~~~lAk~~G~t~~~l~~~~~~Gkit~~~~ 75 (75)
T TIGR02675 26 LASGKLRGEEINSLLEALPGALQALAKAMGVTRGELRKMLSDGKLTADVI 75 (75)
T ss_pred HHcCcccHHHHHHHHHHhHHHHHHHHHHhCCCHHHHHHHHHCCCCccccC
Confidence 457999999999988653 35567777888878888886654
No 123
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=83.82 E-value=7.6 Score=23.64 Aligned_cols=78 Identities=18% Similarity=0.130 Sum_probs=51.9
Q ss_pred CCCcccHHHHHHHHHHh--CCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCC
Q 044803 20 GDDQVSLEELNWLLERI--GVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNEND 91 (141)
Q Consensus 20 ~~g~i~~~e~~~~l~~l--~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (141)
.||.++..|...+-.-+ .++++..+...+. .....++.+|...+.......
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 70 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYE--------------------- 70 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHH---------------------
Confidence 48999999987766543 2466677777766 456789999998877654322
Q ss_pred CcchHHHHHhhcchhccCCCccccHHHHHHH
Q 044803 92 DDGEISDLLEAFNVFDLNGDGFISCEELQNV 122 (141)
Q Consensus 92 ~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~ 122 (141)
....-+.-+|...--| |.++..|-.-+
T Consensus 71 --~r~~~l~~L~~vA~AD--G~~~~~E~~~l 97 (104)
T cd07313 71 --ERLELVEALWEVAYAD--GELDEYEEHLI 97 (104)
T ss_pred --HHHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 4455666666665444 67777775543
No 124
>PLN02952 phosphoinositide phospholipase C
Probab=83.51 E-value=11 Score=31.03 Aligned_cols=49 Identities=6% Similarity=0.157 Sum_probs=39.3
Q ss_pred CCCcccHHHHHHHHHHhCC--CCCHHHHHHHh-----hCCCcCHHHHHHHHHhhhh
Q 044803 20 GDDQVSLEELNWLLERIGV--RLSLEELESFV-----GKSSLDLNEFLFFWKSISK 68 (141)
Q Consensus 20 ~~g~i~~~e~~~~l~~l~~--~~~~~~~~~l~-----~~g~i~~~ef~~~~~~~~~ 68 (141)
+.|.+++.+|..+.+.+.. .....++..+| +.+.++.++|..++.....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGGGHMGADQLRRFLVLHQD 68 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCCCccCHHHHHHHHHHhCC
Confidence 4689999999988887743 33678999999 4568999999999887654
No 125
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=82.89 E-value=6.3 Score=26.96 Aligned_cols=60 Identities=20% Similarity=0.278 Sum_probs=40.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHh-------CCCCCHHHHHHHh-----hCCCcCHHHHHHHHHh
Q 044803 6 TADLQRIFKQLDKNGDDQVSLEELNWLLERI-------GVRLSLEELESFV-----GKSSLDLNEFLFFWKS 65 (141)
Q Consensus 6 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l-------~~~~~~~~~~~l~-----~~g~i~~~ef~~~~~~ 65 (141)
-++++.+|.++++.+.+.++..|+..+++.- |...+.-|...++ .+|.+.-+....++..
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~iR~vYDG 166 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKEDIRGVYDG 166 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHHHhhhcch
Confidence 4678999999999889999999999998853 2222222222222 5677766666555443
No 126
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=82.41 E-value=1.7 Score=35.54 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=29.7
Q ss_pred chHHHHHhhcchhccCCCccccHHHHHHHHHHcC
Q 044803 94 GEISDLLEAFNVFDLNGDGFISCEELQNVLSRLG 127 (141)
Q Consensus 94 ~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~ 127 (141)
....-+.++|+.+|.+++|.++..++...|..+.
T Consensus 552 ~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~ 585 (671)
T KOG4347|consen 552 VSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILK 585 (671)
T ss_pred HHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHH
Confidence 4566788999999999999999999999988763
No 127
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=79.58 E-value=9.6 Score=23.60 Aligned_cols=56 Identities=23% Similarity=0.396 Sum_probs=37.6
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh---------hCCCcCHHHHHHHHHhhh
Q 044803 7 ADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV---------GKSSLDLNEFLFFWKSIS 67 (141)
Q Consensus 7 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~---------~~g~i~~~ef~~~~~~~~ 67 (141)
..+++.|..+.. +|+++...|..++ |+.-+.+-...++ ....|+-.|...+...+.
T Consensus 30 ~~VE~RFd~La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qis 94 (100)
T PF08414_consen 30 KEVEKRFDKLAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQIS 94 (100)
T ss_dssp HHHHHHHHHH-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhh
Confidence 457777877766 8999999988754 5666677777777 567888888877776553
No 128
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=78.62 E-value=0.28 Score=31.07 Aligned_cols=46 Identities=26% Similarity=0.225 Sum_probs=31.0
Q ss_pred hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHH
Q 044803 50 GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQN 121 (141)
Q Consensus 50 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~ 121 (141)
++|.++-.|+..+...+. .....++..|+..|.|+||.||..|...
T Consensus 67 ~d~~L~~~El~~l~~~l~--------------------------~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 67 KDGVLDRSELKPLRRPLM--------------------------PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp -SSEE-TTTTGGGGSTTS--------------------------TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred CCCccCHHHHHHHHHHHh--------------------------hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 778888888766554332 3344678888999999999999998753
No 129
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=78.59 E-value=26 Score=29.52 Aligned_cols=96 Identities=18% Similarity=0.316 Sum_probs=69.0
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh-----hCCCcCHHHHHHHHHhhhhhccCCCCCcccc
Q 044803 6 TADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV-----GKSSLDLNEFLFFWKSISKQNNNKVDDHEVK 80 (141)
Q Consensus 6 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~-----~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~ 80 (141)
...+...|+..+..+++.+..+++..+...++..+ ++..++ +.+.++..+++.++........
T Consensus 171 ~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~~~~ls~~~L~~Fl~~~q~e~~--------- 238 (746)
T KOG0169|consen 171 ESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHGKEYLSTDDLLRFLEEEQGEDG--------- 238 (746)
T ss_pred HHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCCCCccCHHHHHHHHHHhccccc---------
Confidence 34567778878888899999999999988888777 666666 5788999998888877632221
Q ss_pred ccccCCCCCCCCcchHHHHHhhcchh----ccCCCccccHHHHHHHHHHc
Q 044803 81 DEINGDDNENDDDGEISDLLEAFNVF----DLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~F~~~----D~~~~g~I~~~e~~~~l~~~ 126 (141)
...+.+.++.+.| ...+.+.++.+.|...|..-
T Consensus 239 -------------~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 239 -------------ATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred -------------ccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence 3344444444433 24466789999999998764
No 130
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=77.91 E-value=4.1 Score=31.00 Aligned_cols=92 Identities=18% Similarity=0.136 Sum_probs=64.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHhC--CCC-CHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCCCCcc
Q 044803 8 DLQRIFKQLDKNGDDQVSLEELNWLLERIG--VRL-SLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKVDDHE 78 (141)
Q Consensus 8 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~--~~~-~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~ 78 (141)
+|+.-|..+=.+.++......+...-+.+. +.+ =..++..+| .++.++..|...+...
T Consensus 212 RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ld------------- 278 (434)
T KOG3555|consen 212 RLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELD------------- 278 (434)
T ss_pred HHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhcc-------------
Confidence 566667666556666555555544433331 222 246777888 6788888887665443
Q ss_pred ccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcC
Q 044803 79 VKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLG 127 (141)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~ 127 (141)
..+..++..|+..|...+|.|+..|...-+..-.
T Consensus 279 ---------------knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~ 312 (434)
T KOG3555|consen 279 ---------------KNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD 312 (434)
T ss_pred ---------------CchhHHHHHHhhhcccccCccccchhhhhhccCC
Confidence 5577899999999999999999999998887765
No 131
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=77.32 E-value=9.9 Score=30.67 Aligned_cols=56 Identities=16% Similarity=0.155 Sum_probs=44.4
Q ss_pred hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHc
Q 044803 50 GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 50 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~ 126 (141)
++|.|+..+....+....... .-...+.++++....+.+.+|.|+.++|..++..+
T Consensus 31 ~~G~v~~~~l~~~f~k~~~~~---------------------g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 31 QKGYVTVYELPDAFKKAKLPL---------------------GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred CCCeeehHHhHHHHHHhcccc---------------------cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 789999999888776643211 01568899999999999999999999999977664
No 132
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=77.25 E-value=5.2 Score=26.32 Aligned_cols=60 Identities=20% Similarity=0.189 Sum_probs=34.0
Q ss_pred CcccHHHHHHHHHHhCCCCCHHHHHHHh-------------hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCC
Q 044803 22 DQVSLEELNWLLERIGVRLSLEELESFV-------------GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDN 88 (141)
Q Consensus 22 g~i~~~e~~~~l~~l~~~~~~~~~~~l~-------------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (141)
+.|++.||.++=+=+.+ +...++.++ ..+.|+|+.|..++...+...
T Consensus 6 ~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d------------------ 65 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVD------------------ 65 (138)
T ss_dssp S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S------------------
T ss_pred eccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCC------------------
Confidence 45777777664332222 344455544 466999999999999887664
Q ss_pred CCCCcchHHHHHhhcchh
Q 044803 89 ENDDDGEISDLLEAFNVF 106 (141)
Q Consensus 89 ~~~~~~~~~~l~~~F~~~ 106 (141)
.+.+-.+.+|..|
T Consensus 66 -----~P~~lc~hLF~sF 78 (138)
T PF14513_consen 66 -----LPEDLCQHLFLSF 78 (138)
T ss_dssp -------HHHHHHHHHHS
T ss_pred -----CCHHHHHHHHHHH
Confidence 5667777777777
No 133
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=76.48 E-value=12 Score=22.42 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=38.4
Q ss_pred CCCHHHHHHHh-----hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCcc
Q 044803 39 RLSLEELESFV-----GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGF 113 (141)
Q Consensus 39 ~~~~~~~~~l~-----~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~ 113 (141)
+++..+.+..+ ..--|.+.+|...+....+.. . ..+...+=..+|.-.+|+
T Consensus 3 rITK~eA~~FW~~~Fg~r~IVPW~~F~~~L~~~h~~~-----------------------~-~~~~~aLk~TiDlT~n~~ 58 (85)
T PF02761_consen 3 RITKAEAAEFWKTSFGKRTIVPWSEFRQALQKVHPIS-----------------------S-GLEAMALKSTIDLTCNDY 58 (85)
T ss_dssp --SSHHHHHHHHHHHTT-SEEEHHHHHHHHHHHS--S-----------------------S-HHHHHHHHHHH-TTSSSE
T ss_pred eeccHHHHHHHHHHCCCCeEeeHHHHHHHHHHhcCCC-----------------------c-hHHHHHHHHHHhcccCCc
Confidence 34555666666 445678888888887776553 1 223333344668888888
Q ss_pred ccHHHHHHHHHHcCc
Q 044803 114 ISCEELQNVLSRLGL 128 (141)
Q Consensus 114 I~~~e~~~~l~~~~~ 128 (141)
||.=||--..+-+++
T Consensus 59 iS~FeFdvFtRlFqP 73 (85)
T PF02761_consen 59 ISNFEFDVFTRLFQP 73 (85)
T ss_dssp EEHHHHHHHHHHT--
T ss_pred cchhhhHHHHHHHhh
Confidence 888888777666554
No 134
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=76.09 E-value=9 Score=28.86 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=14.6
Q ss_pred HHHhhCCCCCCcccHHHHHHHHH
Q 044803 12 IFKQLDKNGDDQVSLEELNWLLE 34 (141)
Q Consensus 12 ~F~~~D~~~~g~i~~~e~~~~l~ 34 (141)
.|...|.|+||+++-.++.+++.
T Consensus 249 FF~LHD~NsDGfldeqELEaLFt 271 (442)
T KOG3866|consen 249 FFALHDLNSDGFLDEQELEALFT 271 (442)
T ss_pred heeeeccCCcccccHHHHHHHHH
Confidence 35555666777777777666654
No 135
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=74.65 E-value=3.2 Score=37.77 Aligned_cols=64 Identities=9% Similarity=0.221 Sum_probs=49.9
Q ss_pred CChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCC----CHHHHHHHh-------hCCCcCHHHHHHHHHhh
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRL----SLEELESFV-------GKSSLDLNEFLFFWKSI 66 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~----~~~~~~~l~-------~~g~i~~~ef~~~~~~~ 66 (141)
|++.+..++.++|+.||++..|+|+..+++..++.+..++ .... +++ .++.|++.+-+..+..-
T Consensus 1411 Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~~~k~~~~--kli~mdmp~~~gd~V~f~d~L~aL~~r 1485 (1592)
T KOG2301|consen 1411 LSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLDLGKPNKR--KLISMDLPMVSGDRVHCLDILFALTKR 1485 (1592)
T ss_pred CCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccccCCCCCc--eeeeeecCcCCCCeeehhhHHHHHHHH
Confidence 5778899999999999999999999999999999874332 2221 333 77899998877766553
No 136
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=71.79 E-value=8.2 Score=35.16 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=42.8
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh------hCCCcCHHHHHHHHHhh
Q 044803 12 IFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV------GKSSLDLNEFLFFWKSI 66 (141)
Q Consensus 12 ~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~ 66 (141)
.|..+|.|+.|-|+..+|..++. -....+.+++.-++ .+..++|++|+.-+...
T Consensus 4062 tfkeydpdgkgiiskkdf~kame-~~k~ytqse~dfllscae~dend~~~y~dfv~rfhep 4121 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAME-GHKHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHEP 4121 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHh-ccccchhHHHHHHHHhhccCccccccHHHHHHHhcCc
Confidence 36778999999999999999988 34566778887777 56789999998755443
No 137
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=71.48 E-value=3.8 Score=23.17 Aligned_cols=22 Identities=14% Similarity=0.513 Sum_probs=20.1
Q ss_pred chhccCCCccccHHHHHHHHHH
Q 044803 104 NVFDLNGDGFISCEELQNVLSR 125 (141)
Q Consensus 104 ~~~D~~~~g~I~~~e~~~~l~~ 125 (141)
++||+..+.+||.+++.++.+.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4789999999999999999987
No 138
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=69.14 E-value=7.1 Score=16.92 Aligned_cols=17 Identities=35% Similarity=0.587 Sum_probs=12.9
Q ss_pred ccCCCccccHHHHHHHH
Q 044803 107 DLNGDGFISCEELQNVL 123 (141)
Q Consensus 107 D~~~~g~I~~~e~~~~l 123 (141)
|.|++|.|+.-++.-+-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 67899999998886553
No 139
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=69.12 E-value=16 Score=24.08 Aligned_cols=32 Identities=9% Similarity=0.151 Sum_probs=21.6
Q ss_pred hhccCCCccccHHHHHHHHHHc-CcCcCCChhHhhhc
Q 044803 105 VFDLNGDGFISCEELQNVLSRL-GLWDEKSGKDCTRM 140 (141)
Q Consensus 105 ~~D~~~~g~I~~~e~~~~l~~~-~~~~~~s~~e~~~l 140 (141)
.|.. .+.|+.+-|+.+|+.+ ..++ +++-+.+|
T Consensus 42 ~~~~--~~~Id~egF~~Fm~~yLe~d~--P~~lc~hL 74 (138)
T PF14513_consen 42 KYNP--EEPIDYEGFKLFMKTYLEVDL--PEDLCQHL 74 (138)
T ss_dssp GGEE--TTEE-HHHHHHHHHHHTT-S----HHHHHHH
T ss_pred ccCC--CCCcCHHHHHHHHHHHHcCCC--CHHHHHHH
Confidence 4443 4599999999999996 6667 88777665
No 140
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=68.70 E-value=5.4 Score=23.98 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=23.6
Q ss_pred ccccHHHHHHHHHHcCcCcCCChhHhhhc
Q 044803 112 GFISCEELQNVLSRLGLWDEKSGKDCTRM 140 (141)
Q Consensus 112 g~I~~~e~~~~l~~~~~~~~~s~~e~~~l 140 (141)
..||.+||...-+.+|+++ |.++.+.+
T Consensus 13 n~iT~~eLlkyskqy~i~i--t~~QA~~I 39 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISI--TKKQAEQI 39 (85)
T ss_pred hcCCHHHHHHHHHHhCCCC--CHHHHHHH
Confidence 4789999999999999999 99887765
No 141
>PLN02222 phosphoinositide phospholipase C 2
Probab=63.86 E-value=44 Score=27.48 Aligned_cols=57 Identities=16% Similarity=0.420 Sum_probs=44.3
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHh-------hCCCcCHHHHHHHHHh
Q 044803 7 ADLQRIFKQLDKNGDDQVSLEELNWLLERIGV--RLSLEELESFV-------GKSSLDLNEFLFFWKS 65 (141)
Q Consensus 7 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~--~~~~~~~~~l~-------~~g~i~~~ef~~~~~~ 65 (141)
.++..+|..+.. ++.++.++|..+|..... ..+.+.+..++ ..+.++++.|..++..
T Consensus 25 ~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 25 REIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 478888888754 479999999999998743 34566677666 4677999999999876
No 142
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=63.59 E-value=18 Score=20.55 Aligned_cols=29 Identities=7% Similarity=0.272 Sum_probs=26.1
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHh
Q 044803 21 DDQVSLEELNWLLERIGVRLSLEELESFV 49 (141)
Q Consensus 21 ~g~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (141)
+--|+.+.++..+.++|..||+.+++.++
T Consensus 29 NPpine~mir~M~~QMG~kpSekqi~Q~m 57 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQMGRKPSEKQIKQMM 57 (64)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHH
Confidence 56799999999999999999999998876
No 143
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=61.98 E-value=12 Score=22.70 Aligned_cols=30 Identities=13% Similarity=0.232 Sum_probs=23.1
Q ss_pred HHHHHhhcchhccCCCccccHHHHHHHHHHc
Q 044803 96 ISDLLEAFNVFDLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 96 ~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~ 126 (141)
.++.+.+|+.+ .|.+|.++...|..+|+++
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~ 31 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDV 31 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHH
Confidence 46788999999 8889999999999888873
No 144
>PLN02230 phosphoinositide phospholipase C 4
Probab=61.43 E-value=52 Score=27.21 Aligned_cols=58 Identities=31% Similarity=0.491 Sum_probs=43.0
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCC---CCHHHHHHHh-------------hCCCcCHHHHHHHHHh
Q 044803 7 ADLQRIFKQLDKNGDDQVSLEELNWLLERIGVR---LSLEELESFV-------------GKSSLDLNEFLFFWKS 65 (141)
Q Consensus 7 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~---~~~~~~~~l~-------------~~g~i~~~ef~~~~~~ 65 (141)
.++..+|..+-.++ +.++.++|..+|...... .+.+.+..++ ..+.+++..|..++..
T Consensus 29 ~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 57889999986444 899999999999987532 2455555555 2345999999998866
No 145
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=60.83 E-value=11 Score=21.06 Aligned_cols=26 Identities=19% Similarity=0.487 Sum_probs=21.8
Q ss_pred cccHHHHHHHHHHhCCCCCHHHHHHH
Q 044803 23 QVSLEELNWLLERIGVRLSLEELESF 48 (141)
Q Consensus 23 ~i~~~e~~~~l~~l~~~~~~~~~~~l 48 (141)
.|+.++|..+|++...+.+.+++..+
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 48999999999999999998888765
No 146
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.77 E-value=16 Score=28.19 Aligned_cols=43 Identities=16% Similarity=0.254 Sum_probs=35.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh
Q 044803 7 ADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV 49 (141)
Q Consensus 7 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (141)
..++++|+.+|+..+|+|+..-+..++..++...++...-.++
T Consensus 309 ~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~ 351 (449)
T KOG2871|consen 309 EQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLM 351 (449)
T ss_pred HHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHh
Confidence 4689999999999999999999999999988666665555554
No 147
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=58.33 E-value=29 Score=29.93 Aligned_cols=60 Identities=17% Similarity=0.385 Sum_probs=43.1
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHH-HHHHh-----hCCCcCHHHHHHHHHhhhhh
Q 044803 10 QRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEE-LESFV-----GKSSLDLNEFLFFWKSISKQ 69 (141)
Q Consensus 10 ~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~-~~~l~-----~~g~i~~~ef~~~~~~~~~~ 69 (141)
++.+-..|...-..|+..+++..|...++.++... +..-+ +++.++|.+|..+....+..
T Consensus 147 rk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~~k~dlsf~~f~~ly~~lmfs 212 (1267)
T KOG1264|consen 147 RKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGARKDDLSFEQFHLLYKKLMFS 212 (1267)
T ss_pred HhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhhhccccccHHHHHHHHHHHhhc
Confidence 34444456556677999999999988877765433 32434 78899999999988776644
No 148
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=58.19 E-value=25 Score=18.14 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=23.1
Q ss_pred HHHHHHHHHhhCC--CCCCcccHHHHHHHHHH
Q 044803 6 TADLQRIFKQLDK--NGDDQVSLEELNWLLER 35 (141)
Q Consensus 6 ~~~l~~~F~~~D~--~~~g~i~~~e~~~~l~~ 35 (141)
+..+..+|+.|.. .....++..||+.++..
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 4567788888863 33678999999998874
No 149
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=57.80 E-value=17 Score=27.69 Aligned_cols=54 Identities=22% Similarity=0.223 Sum_probs=41.1
Q ss_pred hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHc
Q 044803 50 GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 50 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~ 126 (141)
.++.|+-.|+..+-....... ......+..|+-.|.|+|-.||..|++.-|..-
T Consensus 346 ~nn~i~rrEwKpFK~~l~k~s-----------------------~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 346 SNNDIERREWKPFKRVLLKKS-----------------------KPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred ccCccchhhcchHHHHHHhhc-----------------------cHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 567788888776555544443 456677788888899999999999999887653
No 150
>PRK00523 hypothetical protein; Provisional
Probab=57.23 E-value=25 Score=20.40 Aligned_cols=29 Identities=7% Similarity=0.215 Sum_probs=25.8
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHh
Q 044803 21 DDQVSLEELNWLLERIGVRLSLEELESFV 49 (141)
Q Consensus 21 ~g~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (141)
+-.|+.+-++..+.++|..||+.++++++
T Consensus 37 NPpine~mir~M~~QMGqKPSekki~Q~m 65 (72)
T PRK00523 37 NPPITENMIRAMYMQMGRKPSESQIKQVM 65 (72)
T ss_pred CcCCCHHHHHHHHHHhCCCccHHHHHHHH
Confidence 56799999999999999999999998876
No 151
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=54.87 E-value=45 Score=26.45 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHH-hCCCCCHHHHHHHh--hCCCcCHHHHHH
Q 044803 6 TADLQRIFKQLDKNGDDQVSLEELNWLLER-IGVRLSLEELESFV--GKSSLDLNEFLF 61 (141)
Q Consensus 6 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~-l~~~~~~~~~~~l~--~~g~i~~~ef~~ 61 (141)
...++.+.+.+|.|.+|.|+.+|=-.+++. +.+.-+...-+.-| .|..|+-++...
T Consensus 67 ~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~dD~~ItVedLWe 125 (575)
T KOG4403|consen 67 YEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHGDDKHITVEDLWE 125 (575)
T ss_pred HHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccCCccceeHHHHHH
Confidence 467899999999999999999998888874 45555555555444 455666655444
No 152
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=54.34 E-value=92 Score=27.29 Aligned_cols=81 Identities=11% Similarity=0.217 Sum_probs=54.6
Q ss_pred hCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh--------hCC-----CcCHHHHHHHHHhhhhhccCCCCCcccccc
Q 044803 16 LDKNGDDQVSLEELNWLLERIGVRLSLEELESFV--------GKS-----SLDLNEFLFFWKSISKQNNNKVDDHEVKDE 82 (141)
Q Consensus 16 ~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~--------~~g-----~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~ 82 (141)
+-.+..|+|....+..++.+-. ....+.+.. +.. ..+|+.|..++..+++
T Consensus 157 mqvn~~grip~knI~k~F~~~k---~~KrVe~al~~~gLp~~k~dsI~~d~f~~e~f~~~l~klcp-------------- 219 (1189)
T KOG1265|consen 157 MQVNFEGRIPVKNIIKTFSADK---KEKRVEKALEACGLPSGKNDSIEPDDFTLEKFYRLLNKLCP-------------- 219 (1189)
T ss_pred hcccccccccHHHHHHHhhcCC---chhHHHHHHHhcCCCCCCcCccChhhccHHHHHHHHHhcCC--------------
Confidence 3457788888888777766321 113344433 112 3455666665555433
Q ss_pred ccCCCCCCCCcchHHHHHhhcchhccCCCccccHHHHHHHHHHc
Q 044803 83 INGDDNENDDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 83 ~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~ 126 (141)
..++..+|..+-.++.-++|.++|..+|..-
T Consensus 220 -------------R~eie~iF~ki~~~~kpylT~~ql~dfln~~ 250 (1189)
T KOG1265|consen 220 -------------RPEIEEIFRKISGKKKPYLTKEQLVDFLNKK 250 (1189)
T ss_pred -------------chhHHHHHHHhccCCCccccHHHHHHHHhhh
Confidence 4589999999988888999999999999873
No 153
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=52.81 E-value=39 Score=21.52 Aligned_cols=74 Identities=26% Similarity=0.253 Sum_probs=43.2
Q ss_pred CCCcccHHHHHHHHHHh--CCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCC
Q 044803 20 GDDQVSLEELNWLLERI--GVRLSLEELESFV------GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNEND 91 (141)
Q Consensus 20 ~~g~i~~~e~~~~l~~l--~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (141)
.||.++..|...+...+ ...++..+...+. .....++.+|+..+.......
T Consensus 36 aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------------- 94 (140)
T PF05099_consen 36 ADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRDSLSPE--------------------- 94 (140)
T ss_dssp TTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS--HH---------------------
T ss_pred cCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhchH---------------------
Confidence 58999999988877655 3333444444444 344678888887766543332
Q ss_pred CcchHHHHHhhcchhccCCCccccHHH
Q 044803 92 DDGEISDLLEAFNVFDLNGDGFISCEE 118 (141)
Q Consensus 92 ~~~~~~~l~~~F~~~D~~~~g~I~~~e 118 (141)
....-+..++.+...|| .++..|
T Consensus 95 --~r~~ll~~l~~ia~ADG--~~~~~E 117 (140)
T PF05099_consen 95 --EREDLLRMLIAIAYADG--EISPEE 117 (140)
T ss_dssp --HHHHHHHHHHHHCTCTT--C-SCCH
T ss_pred --HHHHHHHHHHHHHhcCC--CCCHHH
Confidence 45666777777776654 555444
No 154
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=50.83 E-value=14 Score=23.20 Aligned_cols=22 Identities=9% Similarity=0.548 Sum_probs=19.9
Q ss_pred chhccCCCccccHHHHHHHHHH
Q 044803 104 NVFDLNGDGFISCEELQNVLSR 125 (141)
Q Consensus 104 ~~~D~~~~g~I~~~e~~~~l~~ 125 (141)
+.||+..+.+||.+++.++.+.
T Consensus 10 RLYDT~tS~YITLedi~~lV~~ 31 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVRE 31 (107)
T ss_pred cccCCCccceeeHHHHHHHHHC
Confidence 4789999999999999999876
No 155
>PRK01844 hypothetical protein; Provisional
Probab=50.55 E-value=37 Score=19.71 Aligned_cols=29 Identities=10% Similarity=0.337 Sum_probs=25.6
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHh
Q 044803 21 DDQVSLEELNWLLERIGVRLSLEELESFV 49 (141)
Q Consensus 21 ~g~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (141)
+--|+.+-++..+.+.|..||+.++++.+
T Consensus 36 NPpine~mir~Mm~QMGqkPSekki~Q~m 64 (72)
T PRK01844 36 NPPINEQMLKMMMMQMGQKPSQKKINQMM 64 (72)
T ss_pred CCCCCHHHHHHHHHHhCCCccHHHHHHHH
Confidence 45799999999999999999999998876
No 156
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=50.39 E-value=17 Score=17.42 Aligned_cols=17 Identities=41% Similarity=0.503 Sum_probs=14.5
Q ss_pred CCccccHHHHHHHHHHc
Q 044803 110 GDGFISCEELQNVLSRL 126 (141)
Q Consensus 110 ~~g~I~~~e~~~~l~~~ 126 (141)
++|.|+.+|+.++..+.
T Consensus 1 ~~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 1 SSGTISKEEYLDMASRV 17 (33)
T ss_pred CCceecHHHHHHHHHHH
Confidence 46899999999998875
No 157
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=50.19 E-value=19 Score=20.61 Aligned_cols=28 Identities=25% Similarity=0.231 Sum_probs=14.9
Q ss_pred hHHHHHhhcchhccCCCccccHHHHHHHHHHc
Q 044803 95 EISDLLEAFNVFDLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 95 ~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~ 126 (141)
..+.+..+|..-+ =.||.+|+.+.|+.=
T Consensus 15 ~d~~m~~if~l~~----~~vs~~el~a~lrke 42 (68)
T PF07308_consen 15 KDDDMIEIFALAG----FEVSKAELSAWLRKE 42 (68)
T ss_pred ChHHHHHHHHHcC----CccCHHHHHHHHCCC
Confidence 3444555555443 256666666666653
No 158
>PLN02228 Phosphoinositide phospholipase C
Probab=48.97 E-value=66 Score=26.44 Aligned_cols=63 Identities=10% Similarity=0.247 Sum_probs=38.5
Q ss_pred CHHHHHHHh----hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccC----CCc
Q 044803 41 SLEELESFV----GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLN----GDG 112 (141)
Q Consensus 41 ~~~~~~~l~----~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~----~~g 112 (141)
...++..+| +++.++.++|..++........ ...+.+..+|..|... ..|
T Consensus 22 ~~~ei~~if~~~s~~~~~t~~~~~~FL~~~Q~~~~----------------------~~~~~~~~i~~~~~~~~~~~~~~ 79 (567)
T PLN02228 22 PPVSIKRLFEAYSRNGKMSFDELLRFVSEVQGERH----------------------AGLDYVQDIFHSVKHHNVFHHHG 79 (567)
T ss_pred CcHHHHHHHHHhcCCCccCHHHHHHHHHHhcCCcc----------------------CCHHHHHHHHHHhccchhhcccC
Confidence 456666666 3456888888777766543211 2344556666665322 346
Q ss_pred cccHHHHHHHHHH
Q 044803 113 FISCEELQNVLSR 125 (141)
Q Consensus 113 ~I~~~e~~~~l~~ 125 (141)
.++.+.|...|..
T Consensus 80 ~~~~~gF~~yl~s 92 (567)
T PLN02228 80 LVHLNAFYRYLFS 92 (567)
T ss_pred ccCHHHHHHHhcC
Confidence 7888888888854
No 159
>PLN02228 Phosphoinositide phospholipase C
Probab=48.39 E-value=1.2e+02 Score=25.11 Aligned_cols=58 Identities=17% Similarity=0.357 Sum_probs=42.5
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCC--CCCHHHHHHHh----------hCCCcCHHHHHHHHHhh
Q 044803 7 ADLQRIFKQLDKNGDDQVSLEELNWLLERIGV--RLSLEELESFV----------GKSSLDLNEFLFFWKSI 66 (141)
Q Consensus 7 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~--~~~~~~~~~l~----------~~g~i~~~ef~~~~~~~ 66 (141)
.++..+|..+-. ++.++.++|..+|..... ..+.+.+..++ ..+.++...|..++...
T Consensus 24 ~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 24 VSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred HHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 467888887753 368999999999987742 24455566666 23579999999988654
No 160
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=48.04 E-value=65 Score=21.51 Aligned_cols=44 Identities=18% Similarity=0.206 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHh----CC-CCCHHHHHHHh
Q 044803 6 TADLQRIFKQLDKNGDDQVSLEELNWLLERI----GV-RLSLEELESFV 49 (141)
Q Consensus 6 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l----~~-~~~~~~~~~l~ 49 (141)
+..+.......|..+.+|+|..++|.++-.+ +. .|.++.++.+-
T Consensus 68 Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i~q~l~~~~P~Ee~Lrql~ 116 (148)
T PF12486_consen 68 LQQLADRLNQLEEQRGKYMTISELKTAVYQIQQSLNQSVPLEEQLRQLQ 116 (148)
T ss_pred HHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 4556666677888888999999999987644 22 23345555554
No 161
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=47.71 E-value=52 Score=19.68 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=35.9
Q ss_pred CCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCcccc
Q 044803 51 KSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFIS 115 (141)
Q Consensus 51 ~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~ 115 (141)
+..++|+++.+-+...++....+ +..-++.....+.-..+...++.+||+.|-.+++..++
T Consensus 17 d~~~s~e~L~~~v~~~c~~~~~q----~ft~kw~DEEGDp~tiSS~~EL~EA~rl~~~n~~~~l~ 77 (83)
T cd06404 17 DPSISLEELCNEVRDMCRFHNDQ----PFTLKWIDEEGDPCTISSQMELEEAFRLYELNKDSELN 77 (83)
T ss_pred CCCcCHHHHHHHHHHHhCCCCCC----cEEEEEECCCCCceeecCHHHHHHHHHHHHhcCcccEE
Confidence 45788999888888776543211 11111222222222335688888999998877766543
No 162
>PF03683 UPF0175: Uncharacterised protein family (UPF0175); InterPro: IPR005368 This entry contains small proteins of unknown function.
Probab=45.53 E-value=36 Score=19.72 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=19.4
Q ss_pred ccHHHHHHHHHHcCcCcCCChhHhh
Q 044803 114 ISCEELQNVLSRLGLWDEKSGKDCT 138 (141)
Q Consensus 114 I~~~e~~~~l~~~~~~~~~s~~e~~ 138 (141)
+|..+|...|...|+++..+.++++
T Consensus 46 ~s~~eF~~~L~~~gI~~~~~~eel~ 70 (76)
T PF03683_consen 46 MSRWEFLELLKERGIPINYDEEELE 70 (76)
T ss_pred CCHHHHHHHHHHCCCCCCCCHHHHH
Confidence 5888999999999887545777664
No 163
>KOG4070 consensus Putative signal transduction protein p25 [General function prediction only; Signal transduction mechanisms]
Probab=45.40 E-value=54 Score=22.09 Aligned_cols=63 Identities=16% Similarity=0.269 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhhCCCCC----C-cccHHHHHHHHHHh----CCCCCHHHHHHHh------hCCCcCHHHHHHHHHhhh
Q 044803 5 HTADLQRIFKQLDKNGD----D-QVSLEELNWLLERI----GVRLSLEELESFV------GKSSLDLNEFLFFWKSIS 67 (141)
Q Consensus 5 ~~~~l~~~F~~~D~~~~----g-~i~~~e~~~~l~~l----~~~~~~~~~~~l~------~~g~i~~~ef~~~~~~~~ 67 (141)
..+.+++.|+.|..-++ | .++-..|..+++.. |...+..+..-.| .-+.++|++|...+..+.
T Consensus 10 ~~a~~~~~f~~Fa~fGd~~asg~em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~ela 87 (180)
T KOG4070|consen 10 DMAGLEESFRAFAKFGDSKASGTEMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEELA 87 (180)
T ss_pred chhhHHHHHHHHHHcCCccccccccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHHH
Confidence 34567777777765443 3 46777777777765 3445555555555 456899999977776654
No 164
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=45.18 E-value=24 Score=24.30 Aligned_cols=31 Identities=16% Similarity=0.383 Sum_probs=24.2
Q ss_pred cCCCccccHHHHHHHHHHcCcCcCCChhHhhhc
Q 044803 108 LNGDGFISCEELQNVLSRLGLWDEKSGKDCTRM 140 (141)
Q Consensus 108 ~~~~g~I~~~e~~~~l~~~~~~~~~s~~e~~~l 140 (141)
.|.+|++..+++...++.-+..+ |.+++.++
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~--t~~~l~~v 58 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWV--TRELLEAV 58 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCC--CHHHHHHH
Confidence 56789999999999887656666 88877665
No 165
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.17 E-value=50 Score=19.08 Aligned_cols=29 Identities=10% Similarity=0.331 Sum_probs=25.1
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHh
Q 044803 21 DDQVSLEELNWLLERIGVRLSLEELESFV 49 (141)
Q Consensus 21 ~g~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (141)
+-.|+.+-++..+.+.|..||+.++++++
T Consensus 36 NPpine~~iR~M~~qmGqKpSe~kI~Qvm 64 (71)
T COG3763 36 NPPINEEMIRMMMAQMGQKPSEKKINQVM 64 (71)
T ss_pred CCCCCHHHHHHHHHHhCCCchHHHHHHHH
Confidence 46789999999999999999999998876
No 166
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=44.60 E-value=17 Score=33.37 Aligned_cols=26 Identities=23% Similarity=0.579 Sum_probs=22.8
Q ss_pred hhcchhccCCCccccHHHHHHHHHHc
Q 044803 101 EAFNVFDLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 101 ~~F~~~D~~~~g~I~~~e~~~~l~~~ 126 (141)
..|+.||+||.|.|+..+|..++..-
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~ 4086 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGH 4086 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhcc
Confidence 35889999999999999999988754
No 167
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=44.45 E-value=75 Score=25.67 Aligned_cols=54 Identities=19% Similarity=0.232 Sum_probs=42.5
Q ss_pred HHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh--------------hCCCcCHHHHHHHHHh
Q 044803 12 IFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV--------------GKSSLDLNEFLFFWKS 65 (141)
Q Consensus 12 ~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~--------------~~g~i~~~ef~~~~~~ 65 (141)
+|..|....++.++..-|-.+|+++|+.-+.-.+...+ ....++-+.|..++..
T Consensus 91 LFyLiaegq~ekipihKFiTALkstGLrtsDPRLk~mMd~mKd~dq~~~e~S~gw~LdKDlFKkcI~s 158 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKSTGLRTSDPRLKDMMDEMKDVDQEENESSSGWLLDKDLFKKCIFS 158 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHHcCCCcCCchHHHHHHHHHHHHhhhcccccceeecHHHHHHhhcc
Confidence 56777666689999999999999999998888887777 2346677777776554
No 168
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=44.32 E-value=19 Score=24.87 Aligned_cols=32 Identities=28% Similarity=0.590 Sum_probs=20.2
Q ss_pred ccCCCccccHHHHHHHHHHcCcCcCCChhHhhhc
Q 044803 107 DLNGDGFISCEELQNVLSRLGLWDEKSGKDCTRM 140 (141)
Q Consensus 107 D~~~~g~I~~~e~~~~l~~~~~~~~~s~~e~~~l 140 (141)
..+.+|+|+.+++...+..-+.++ |.+++.++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~--t~~~i~~v 57 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWV--TEEDIREV 57 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT----HHHHHHH
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCC--CHHHHHHH
Confidence 467789999999999988877777 88887765
No 169
>PF14277 DUF4364: Domain of unknown function (DUF4364)
Probab=44.30 E-value=69 Score=21.65 Aligned_cols=40 Identities=8% Similarity=0.236 Sum_probs=34.5
Q ss_pred HHHHHhCCCCCHHHHHHHh-hCCCcCHHHHHHHHHhhhhhc
Q 044803 31 WLLERIGVRLSLEELESFV-GKSSLDLNEFLFFWKSISKQN 70 (141)
Q Consensus 31 ~~l~~l~~~~~~~~~~~l~-~~g~i~~~ef~~~~~~~~~~~ 70 (141)
-++.+++.+++..++-.++ ..+.++|-.+.+.+.......
T Consensus 7 YiL~~v~~pltn~qit~~iL~~~~~nYF~lqq~l~eL~es~ 47 (163)
T PF14277_consen 7 YILKKVKFPLTNSQITEFILENEYTNYFTLQQALSELVESG 47 (163)
T ss_pred HHHHhCCCCCCHHHHHHHHHhcCcccHHHHHHHHHHHHHCC
Confidence 4677889999999999999 999999999999988876543
No 170
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=42.11 E-value=23 Score=20.80 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh
Q 044803 4 LHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV 49 (141)
Q Consensus 4 ~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (141)
.....++++..+- ...|+||+.++..+|. ...++.+.+..++
T Consensus 4 ~~~~~i~~Li~~g--K~~G~lT~~eI~~~L~--~~~~~~e~id~i~ 45 (82)
T PF03979_consen 4 QYEEAIKKLIEKG--KKKGYLTYDEINDALP--EDDLDPEQIDEIY 45 (82)
T ss_dssp HHHHHHHHHHHHH--HHHSS-BHHHHHHH-S---S---HHHHHHHH
T ss_pred hhHHHHHHHHHHH--hhcCcCCHHHHHHHcC--ccCCCHHHHHHHH
Confidence 3445666655542 3478999999999887 3346677777777
No 171
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=41.99 E-value=12 Score=29.51 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=27.5
Q ss_pred chHHHHHhhcchhccCCCccccHHHHHHHHHH
Q 044803 94 GEISDLLEAFNVFDLNGDGFISCEELQNVLSR 125 (141)
Q Consensus 94 ~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~ 125 (141)
...+-++.+.+.+|.|.+|.|+.+|--.+|+.
T Consensus 65 lg~EAir~iHrqmDDD~nG~Id~~ESdeFlrE 96 (575)
T KOG4403|consen 65 LGYEAIRDIHRQMDDDHNGSIDVEESDEFLRE 96 (575)
T ss_pred hhHHHHHHHHHhcccccCCCcccccchHHHHH
Confidence 55788889999999999999999988888876
No 172
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=41.97 E-value=58 Score=18.05 Aligned_cols=29 Identities=21% Similarity=0.207 Sum_probs=25.2
Q ss_pred CCcccHHHHHHHHHHhCCCCCHHHHHHHh
Q 044803 21 DDQVSLEELNWLLERIGVRLSLEELESFV 49 (141)
Q Consensus 21 ~g~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (141)
+-.+|-+|+...+..++-.++..++-.+|
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW 35 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIW 35 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 34688999999999999999999988888
No 173
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=41.70 E-value=26 Score=22.40 Aligned_cols=26 Identities=31% Similarity=0.439 Sum_probs=17.7
Q ss_pred CCHHHHHHHh------hCCCcCHHHHHHHHHh
Q 044803 40 LSLEELESFV------GKSSLDLNEFLFFWKS 65 (141)
Q Consensus 40 ~~~~~~~~l~------~~g~i~~~ef~~~~~~ 65 (141)
++.+++..+| ..|++.|.+|+.-+..
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHccc
Confidence 5678888888 6789999999887664
No 174
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=41.08 E-value=42 Score=17.43 Aligned_cols=22 Identities=14% Similarity=0.071 Sum_probs=19.3
Q ss_pred cHHHHHHHHHHcCcCcCCChhHhh
Q 044803 115 SCEELQNVLSRLGLWDEKSGKDCT 138 (141)
Q Consensus 115 ~~~e~~~~l~~~~~~~~~s~~e~~ 138 (141)
+.+++..+.+..|..+ |.+++.
T Consensus 28 ~~~e~~~lA~~~Gy~f--t~~el~ 49 (49)
T PF07862_consen 28 NPEEVVALAREAGYDF--TEEELE 49 (49)
T ss_pred CHHHHHHHHHHcCCCC--CHHHhC
Confidence 8899999999999999 988763
No 175
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=41.07 E-value=72 Score=21.11 Aligned_cols=18 Identities=11% Similarity=0.119 Sum_probs=13.5
Q ss_pred hCCCcCHHHHHHHHHhhh
Q 044803 50 GKSSLDLNEFLFFWKSIS 67 (141)
Q Consensus 50 ~~g~i~~~ef~~~~~~~~ 67 (141)
+...|++.+|...+....
T Consensus 45 nGe~Is~~ef~~~v~~~~ 62 (145)
T PF13623_consen 45 NGEKISYQEFQQRVEQAT 62 (145)
T ss_pred CCEEcCHHHHHHHHHHHH
Confidence 566899999987766654
No 176
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=40.99 E-value=1.2e+02 Score=20.95 Aligned_cols=47 Identities=13% Similarity=0.019 Sum_probs=28.7
Q ss_pred CCCcccHHHHH-HHHHHhCCCCCHHHHHHHhhCCCcCHHHHHHHHHhhh
Q 044803 20 GDDQVSLEELN-WLLERIGVRLSLEELESFVGKSSLDLNEFLFFWKSIS 67 (141)
Q Consensus 20 ~~g~i~~~e~~-~~l~~l~~~~~~~~~~~l~~~g~i~~~ef~~~~~~~~ 67 (141)
=||.|+..+.. .+++.+.. +...++...+.+|.+++.+.+...-...
T Consensus 6 FDgTit~~d~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~e~~~~~~~~~ 53 (214)
T TIGR03333 6 FDGTITNNDNIISIMKQFAP-PEWEALKDGVLSKTLSIQEGVGRMFGLL 53 (214)
T ss_pred cCCCCCcchhHHHHHHHhCc-HHHHHHHHHHHcCCccHHHHHHHHHhhC
Confidence 46888888864 33443322 2344444444678999999876555444
No 177
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=39.47 E-value=45 Score=18.34 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=24.6
Q ss_pred CChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQVSLEELNWLLE 34 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~ 34 (141)
||+.....|+.+|..-. ..+.+...++...|.
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~~L~ 33 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAERLG 33 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHHHHC
Confidence 46666778888888764 678899999887665
No 178
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=38.86 E-value=1.4e+02 Score=26.18 Aligned_cols=59 Identities=14% Similarity=0.289 Sum_probs=48.0
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHh----------CCCCCHHHHHHHh----------hCCCcCHHHHHHHHHh
Q 044803 7 ADLQRIFKQLDKNGDDQVSLEELNWLLERI----------GVRLSLEELESFV----------GKSSLDLNEFLFFWKS 65 (141)
Q Consensus 7 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l----------~~~~~~~~~~~l~----------~~g~i~~~ef~~~~~~ 65 (141)
-++..+|..+-.+..-+++.+++..++..- -.......+..++ .+|.++-+.|+..+..
T Consensus 221 ~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 221 PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 468889999988888999999999999843 2345678888888 6899999999988765
No 179
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=38.82 E-value=71 Score=17.71 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHH
Q 044803 6 TADLQRIFKQLDKNGDDQVSLEELNW 31 (141)
Q Consensus 6 ~~~l~~~F~~~D~~~~g~i~~~e~~~ 31 (141)
.+++.+.+..|..+....++.++++.
T Consensus 33 ~~el~~R~~~~~~g~~~~i~~eev~~ 58 (63)
T TIGR02574 33 KAELDRRLADYKADPSKASPWEEVRA 58 (63)
T ss_pred HHHHHHHHHHHHcCCcCCCCHHHHHH
Confidence 34444444444444444455554444
No 180
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=38.24 E-value=27 Score=26.39 Aligned_cols=26 Identities=35% Similarity=0.694 Sum_probs=22.7
Q ss_pred HhhcchhccCCCccccHHHHHHHHHH
Q 044803 100 LEAFNVFDLNGDGFISCEELQNVLSR 125 (141)
Q Consensus 100 ~~~F~~~D~~~~g~I~~~e~~~~l~~ 125 (141)
+..|..+|.|++|+++.-|+..++..
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtk 272 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTK 272 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHH
Confidence 45688899999999999999988875
No 181
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=38.11 E-value=1e+02 Score=19.45 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=42.9
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh--hCCCcCHHHHHHH
Q 044803 9 LQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV--GKSSLDLNEFLFF 62 (141)
Q Consensus 9 l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~--~~g~i~~~ef~~~ 62 (141)
+..+|-.+..-++...+..+++.+|.+.|.-...+.+..++ -.|+ +.+|.+..
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~GK-~i~ElIA~ 57 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILESVGAEIDDERINLVLSELKGK-DIEELIAA 57 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhcCC-CHHHHHHH
Confidence 34566677778888899999999999999999999999999 3445 77777654
No 182
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=37.83 E-value=65 Score=16.95 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=27.2
Q ss_pred CChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHH
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELE 46 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~ 46 (141)
+|+.+...|...|.. +.+.+..+...+...+|++ ...+.
T Consensus 7 ~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~l~--~~~V~ 45 (57)
T PF00046_consen 7 FTKEQLKVLEEYFQE-----NPYPSKEEREELAKELGLT--ERQVK 45 (57)
T ss_dssp SSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHTSS--HHHHH
T ss_pred CCHHHHHHHHHHHHH-----hcccccccccccccccccc--ccccc
Confidence 467778888888863 6778888887777766544 44444
No 183
>TIGR00624 tag DNA-3-methyladenine glycosylase I. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.75 E-value=1.3e+02 Score=20.72 Aligned_cols=53 Identities=23% Similarity=0.383 Sum_probs=39.6
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh---------hCCCcCHHHHHH
Q 044803 7 ADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV---------GKSSLDLNEFLF 61 (141)
Q Consensus 7 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~---------~~g~i~~~ef~~ 61 (141)
..++++|.-||...=-..+-+++..++..-++--....|..+. ..+ +|.+|+=
T Consensus 53 ~~fr~aF~~Fd~~~VA~~~e~~ie~L~~d~~IIRnr~KI~Avi~NA~~~l~i~~e--sf~~ylW 114 (179)
T TIGR00624 53 ENYRRAFSGFDIVKVARMTDADVERLLQDDGIIRNRGKIEATIANARAALQLEQN--DLVEFLW 114 (179)
T ss_pred HHHHHHHcCCCHHHHhCCCHHHHHHHhcCccchhhHHHHHHHHHHHHHHHHHHHc--cHHHHHH
Confidence 4688999999988888888899988888666555666676666 233 7777763
No 184
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=35.61 E-value=78 Score=21.79 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=27.5
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh
Q 044803 18 KNGDDQVSLEELNWLLERIGVRLSLEELESFV 49 (141)
Q Consensus 18 ~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (141)
.|.+|+++.+++...++.-+...+.+.+..+.
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV 59 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVV 59 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHH
Confidence 48899999999999887556678999999998
No 185
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=34.81 E-value=1.1e+02 Score=19.46 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=37.5
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhCCCcCHHHHHHHHHhh
Q 044803 17 DKNGDDQVSLEELNWLLERIGVRLSLEELESFVGKSSLDLNEFLFFWKSI 66 (141)
Q Consensus 17 D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~g~i~~~ef~~~~~~~ 66 (141)
|-+.+..|=.+-+..+|++.|..-+-+.++.+.....|+-+.+..++...
T Consensus 47 dL~~nWeVlaEpIQTvmRr~g~~~pYE~LK~lTRg~~it~~~l~~fI~~L 96 (115)
T PF08328_consen 47 DLDENWEVLAEPIQTVMRRYGIPNPYEKLKELTRGKKITKEDLREFIESL 96 (115)
T ss_dssp HHCT-GGGGHHHHHHHHHHTT-SSHHHHHHHHHTTS---HHHHHHHHHTS
T ss_pred HHHHCHHHHHHHHHHHHHHcCCCCHHHHHHHHHcCCCCCHHHHHHHHHhC
Confidence 34667788889999999999999889999999966689998888887764
No 186
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=34.71 E-value=48 Score=21.39 Aligned_cols=42 Identities=17% Similarity=0.257 Sum_probs=35.7
Q ss_pred chHHHHHhhcchhccCCCccccHHHHHHHHHHc-CcCcCCChhHhhhc
Q 044803 94 GEISDLLEAFNVFDLNGDGFISCEELQNVLSRL-GLWDEKSGKDCTRM 140 (141)
Q Consensus 94 ~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~-~~~~~~s~~e~~~l 140 (141)
...+++..+|++|-. +.|+.+.+..++... |..+ |..|++-+
T Consensus 34 tf~~Kl~~Il~mFl~---~eid~e~~y~l~~~~d~~~L--T~~Qi~Yl 76 (122)
T PF06648_consen 34 TFLDKLIKILKMFLN---DEIDVEDMYNLFGAVDGLKL--TRSQIDYL 76 (122)
T ss_pred hHHHHHHHHHHHHHh---CCCCHHHHHHHHhcccHhhc--CHHHHHHH
Confidence 788999999999954 589999999999988 6777 99988643
No 187
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=34.24 E-value=97 Score=17.92 Aligned_cols=9 Identities=11% Similarity=0.242 Sum_probs=3.9
Q ss_pred cCHHHHHHH
Q 044803 54 LDLNEFLFF 62 (141)
Q Consensus 54 i~~~ef~~~ 62 (141)
++.++...+
T Consensus 46 ~~~eeiq~L 54 (71)
T PF04282_consen 46 MPVEEIQKL 54 (71)
T ss_pred CCHHHHHHH
Confidence 444444333
No 188
>PRK03968 DNA primase large subunit; Validated
Probab=33.60 E-value=1.3e+02 Score=23.45 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=39.5
Q ss_pred CCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhCCCcCHHHHHHHHHh
Q 044803 18 KNGDDQVSLEELNWLLERIGVRLSLEELESFVGKSSLDLNEFLFFWKS 65 (141)
Q Consensus 18 ~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~g~i~~~ef~~~~~~ 65 (141)
..+.+.++..+....-+..+..+..++...+....+|.|.+|+.++..
T Consensus 116 ~~~~~e~p~~d~~~l~~~~~~el~~e~~~~~~~~y~i~~~df~~l~gs 163 (399)
T PRK03968 116 VVNAIEIPEKDRKILERVRGRELPPEELEDLLPEYKIKWKDLLDLIGS 163 (399)
T ss_pred ccccccccchhhhhhhhhcccccCHHHHHHHhhhccccHHHHHHhcCC
Confidence 455677888888888888888888999988887889999999986554
No 189
>cd08315 Death_TRAILR_DR4_DR5 Death domain of Tumor necrosis factor-Related Apoptosis-Inducing Ligand Receptors. Death Domain (DD) found in Tumor necrosis factor-Related Apoptosis-Inducing Ligand (TRAIL) Receptors. In mammals, this family includes TRAILR1 (also called DR4 or TNFRSF10A) and TRAILR2 (also called DR5, TNFRSF10B, or KILLER). They function as receptors for the cytokine TRAIL and are involved in apoptosis signaling pathways. TRAIL preferentially induces apoptosis in cancer cells while exhibiting little toxicity in normal cells. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=32.66 E-value=1.2e+02 Score=18.48 Aligned_cols=51 Identities=22% Similarity=0.398 Sum_probs=31.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhCCCcCHHHHHHHH
Q 044803 7 ADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFVGKSSLDLNEFLFFW 63 (141)
Q Consensus 7 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~g~i~~~ef~~~~ 63 (141)
..+...|..+-. .|+..+++.+.+.+| ++..+|..+-.+..-+.+.-..++
T Consensus 4 ~~l~~~f~~i~~----~V~~~~Wk~laR~LG--Lse~~I~~i~~~~~~~~eq~~qmL 54 (96)
T cd08315 4 ETLRRSFDHFIK----EVPFDSWNRLMRQLG--LSENEIDVAKANERVTREQLYQML 54 (96)
T ss_pred hHHHHHHHHHHH----HCCHHHHHHHHHHcC--CCHHHHHHHHHHCCCCHHHHHHHH
Confidence 456666766533 388899999998887 557777777733333334333333
No 190
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=32.42 E-value=70 Score=17.74 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=18.9
Q ss_pred ccHHHHHHHHHHcCcCcCCChhHhh
Q 044803 114 ISCEELQNVLSRLGLWDEKSGKDCT 138 (141)
Q Consensus 114 I~~~e~~~~l~~~~~~~~~s~~e~~ 138 (141)
.+.+++..+.+..|..+ |.+++.
T Consensus 25 ~~~e~~~~lA~~~Gf~f--t~~el~ 47 (64)
T TIGR03798 25 EDPEDRVAIAKEAGFEF--TGEDLK 47 (64)
T ss_pred CCHHHHHHHHHHcCCCC--CHHHHH
Confidence 45888999999999888 888775
No 191
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=31.91 E-value=94 Score=25.04 Aligned_cols=62 Identities=13% Similarity=0.183 Sum_probs=44.2
Q ss_pred CChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh-hCCCcCHHHHHHHHHhhh
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV-GKSSLDLNEFLFFWKSIS 67 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~-~~g~i~~~ef~~~~~~~~ 67 (141)
|++.+..-+.-+|+..|.++=-.|+..+++.++.-+ .+....+. .-|.|+-...-.+...++
T Consensus 122 LNdtQ~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v-----~e~~~e~~~~yG~is~aS~gaI~R~ll 184 (502)
T PF05872_consen 122 LNDTQEGVLNIVFRIADDEGLLLLDLKDLRAMLQYV-----SENAKELSAEYGNISSASIGAIQRALL 184 (502)
T ss_pred cchHHHHHHHHHHHHhccCCCccccHHHHHHHHHHH-----HhhHHHHHHHcCCccHHHHHHHHHHHH
Confidence 345566678889999999988899999999999855 22333333 557777776666555544
No 192
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=31.68 E-value=96 Score=17.10 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=24.2
Q ss_pred CChhhHHHHHHHHHhhCCCCCCc----ccHHHHHHHHHHhCCC
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQ----VSLEELNWLLERIGVR 39 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~----i~~~e~~~~l~~l~~~ 39 (141)
.|+.+...+...|.. .|+ .+..+...+...+|++
T Consensus 8 Ft~~Q~~~Le~~fe~-----~~y~~~~~~~~~r~~la~~lgl~ 45 (58)
T TIGR01565 8 FTAEQKEKMRDFAEK-----LGWKLKDKRREEVREFCEEIGVT 45 (58)
T ss_pred CCHHHHHHHHHHHHH-----cCCCCCCCCHHHHHHHHHHhCCC
Confidence 367788888888854 566 7777777777766544
No 193
>PRK14074 rpsF 30S ribosomal protein S6; Provisional
Probab=31.34 E-value=1.4e+02 Score=21.72 Aligned_cols=69 Identities=20% Similarity=0.194 Sum_probs=48.0
Q ss_pred CChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh---hCCCcCHHHHHHHHHhhhhh
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV---GKSSLDLNEFLFFWKSISKQ 69 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~---~~g~i~~~ef~~~~~~~~~~ 69 (141)
||+.+...+.+-|...=.++.|.+-..|...+...=+-..+..+...-. ...-|-|.+|+..+..++..
T Consensus 14 ls~~q~e~l~e~~~~~l~~~~~~v~~~e~wG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (257)
T PRK14074 14 LLQQEVEEMVQELAVLLKNIKADVMFQQIKGILEKGNDKLTKQELEVRAEDIKESLIAYSDFLEDLTKILWV 85 (257)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCeeehhhhhhhhhcccchhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777766678889998888888777555555555554433 55678888888877766543
No 194
>PF13551 HTH_29: Winged helix-turn helix
Probab=30.95 E-value=1.2e+02 Score=18.10 Aligned_cols=9 Identities=44% Similarity=0.409 Sum_probs=4.1
Q ss_pred cccHHHHHH
Q 044803 23 QVSLEELNW 31 (141)
Q Consensus 23 ~i~~~e~~~ 31 (141)
..+...+..
T Consensus 80 ~~t~~~l~~ 88 (112)
T PF13551_consen 80 RWTLEELAE 88 (112)
T ss_pred cccHHHHHH
Confidence 344444444
No 195
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.84 E-value=42 Score=22.84 Aligned_cols=22 Identities=9% Similarity=0.451 Sum_probs=18.8
Q ss_pred chhccCCCccccHHHHHHHHHH
Q 044803 104 NVFDLNGDGFISCEELQNVLSR 125 (141)
Q Consensus 104 ~~~D~~~~g~I~~~e~~~~l~~ 125 (141)
++|++..+.+||.+++.++.++
T Consensus 19 RLYnT~TSTYVTL~dla~mVk~ 40 (193)
T COG5394 19 RLYNTGTSTYVTLEDLAQMVKE 40 (193)
T ss_pred hhcccCCceeeeHHHHHHHHhc
Confidence 4678888999999999998876
No 196
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair]
Probab=30.77 E-value=53 Score=22.82 Aligned_cols=54 Identities=19% Similarity=0.310 Sum_probs=41.1
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh---------hCCCcCHHHHH
Q 044803 7 ADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV---------GKSSLDLNEFL 60 (141)
Q Consensus 7 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~---------~~g~i~~~ef~ 60 (141)
..++++|..||..+=-..+-+++..+|..-|+--....|.... ....=+|.+|+
T Consensus 55 e~freaF~~Fd~~kVA~~~~~dverLl~d~gIIR~r~KI~A~i~NA~~~l~l~~e~Gsf~~fl 117 (188)
T COG2818 55 EAFREAFHGFDPEKVAAMTEEDVERLLADAGIIRNRGKIKATINNARAVLELQKEFGSFSEFL 117 (188)
T ss_pred HHHHHHHhcCCHHHHHcCCHHHHHHHHhCcchhhhHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4689999999999988999999999998777665666666655 34444677766
No 197
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=30.73 E-value=1.5e+02 Score=18.87 Aligned_cols=51 Identities=12% Similarity=0.212 Sum_probs=38.2
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh-hCCCcCHHHHHH
Q 044803 11 RIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV-GKSSLDLNEFLF 61 (141)
Q Consensus 11 ~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~-~~g~i~~~ef~~ 61 (141)
.+|-....-++..+|.++++.+|+..|.......+..++ .=...+..+.+.
T Consensus 7 aAYlL~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~GKdI~ELIa 58 (112)
T PTZ00373 7 AAYLMCVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEGKTPHELIA 58 (112)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcCCCHHHHHH
Confidence 445555556677899999999999999999888888888 223356777665
No 198
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=30.61 E-value=55 Score=15.38 Aligned_cols=15 Identities=40% Similarity=0.401 Sum_probs=11.8
Q ss_pred CccccHHHHHHHHHH
Q 044803 111 DGFISCEELQNVLSR 125 (141)
Q Consensus 111 ~g~I~~~e~~~~l~~ 125 (141)
.|.||.+||...-+.
T Consensus 14 ~G~IseeEy~~~k~~ 28 (31)
T PF09851_consen 14 KGEISEEEYEQKKAR 28 (31)
T ss_pred cCCCCHHHHHHHHHH
Confidence 589999999876554
No 199
>PLN02230 phosphoinositide phospholipase C 4
Probab=30.24 E-value=74 Score=26.36 Aligned_cols=33 Identities=30% Similarity=0.597 Sum_probs=27.7
Q ss_pred chHHHHHhhcchhccCCCccccHHHHHHHHHHcC
Q 044803 94 GEISDLLEAFNVFDLNGDGFISCEELQNVLSRLG 127 (141)
Q Consensus 94 ~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~ 127 (141)
....++..+|..|-. +.+.+|.++|..+|..-.
T Consensus 26 ~p~~ei~~lf~~~s~-~~~~mt~~~l~~FL~~~Q 58 (598)
T PLN02230 26 GPVADVRDLFEKYAD-GDAHMSPEQLQKLMAEEG 58 (598)
T ss_pred CCcHHHHHHHHHHhC-CCCccCHHHHHHHHHHhC
Confidence 467899999999954 448999999999999863
No 200
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=30.12 E-value=87 Score=21.62 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=21.7
Q ss_pred CCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh
Q 044803 17 DKNGDDQVSLEELNWLLERIGVRLSLEELESFV 49 (141)
Q Consensus 17 D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (141)
..+.+|+++.+++...+..-+...+.+++..++
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV 58 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVV 58 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHH
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 358899999999999888656667888888888
No 201
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=29.81 E-value=51 Score=20.75 Aligned_cols=23 Identities=13% Similarity=0.173 Sum_probs=10.4
Q ss_pred cHHHHHHHHHHcCcCcCCChhHhhh
Q 044803 115 SCEELQNVLSRLGLWDEKSGKDCTR 139 (141)
Q Consensus 115 ~~~e~~~~l~~~~~~~~~s~~e~~~ 139 (141)
|.+|++.++...+..+ ++++++.
T Consensus 80 ~~dElrai~~~~~~~~--~~e~l~~ 102 (112)
T PRK14981 80 TRDELRAIFAKERYTL--SPEELDE 102 (112)
T ss_pred CHHHHHHHHHHhccCC--CHHHHHH
Confidence 3444444444444344 4444443
No 202
>COG5562 Phage envelope protein [General function prediction only]
Probab=29.37 E-value=40 Score=22.10 Aligned_cols=26 Identities=8% Similarity=0.106 Sum_probs=18.9
Q ss_pred CCHHHHHHHh---hCCCcCHHHHHHHHHh
Q 044803 40 LSLEELESFV---GKSSLDLNEFLFFWKS 65 (141)
Q Consensus 40 ~~~~~~~~l~---~~g~i~~~ef~~~~~~ 65 (141)
.+..-+.... ..|..+|++|+..+..
T Consensus 72 ~n~~~i~~al~~~qsGqttF~ef~~~la~ 100 (137)
T COG5562 72 FNTTLIKTALRRHQSGQTTFEEFCSALAE 100 (137)
T ss_pred cCHHHHHHHHHHHhcCCccHHHHHHHHHh
Confidence 4455555555 7899999999987654
No 203
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=28.55 E-value=57 Score=27.19 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=28.4
Q ss_pred chHHHHHhhcchhccCCCccccHHHHHHHHHHc
Q 044803 94 GEISDLLEAFNVFDLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 94 ~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~ 126 (141)
+....++..|..+|. ++|.++.+++..++...
T Consensus 15 ~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~ 46 (646)
T KOG0039|consen 15 SYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSS 46 (646)
T ss_pred ChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHH
Confidence 678899999999988 99999999999888763
No 204
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=28.27 E-value=79 Score=15.07 Aligned_cols=18 Identities=28% Similarity=0.392 Sum_probs=13.7
Q ss_pred cccHHHHHHHHHHcCcCc
Q 044803 113 FISCEELQNVLSRLGLWD 130 (141)
Q Consensus 113 ~I~~~e~~~~l~~~~~~~ 130 (141)
.++..++++.++..|.+.
T Consensus 3 ~l~~~~Lk~~l~~~gl~~ 20 (35)
T smart00513 3 KLKVSELKDELKKRGLST 20 (35)
T ss_pred cCcHHHHHHHHHHcCCCC
Confidence 457788888888887764
No 205
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=28.21 E-value=1.3e+02 Score=18.84 Aligned_cols=30 Identities=20% Similarity=0.432 Sum_probs=13.9
Q ss_pred HhCCCCCHHHHHHHh----hCCCcCHHHHHHHHH
Q 044803 35 RIGVRLSLEELESFV----GKSSLDLNEFLFFWK 64 (141)
Q Consensus 35 ~l~~~~~~~~~~~l~----~~g~i~~~ef~~~~~ 64 (141)
..|+..++.++...+ ....+|.++|...+.
T Consensus 62 ~~gI~vsd~evd~~i~~ia~~n~ls~~ql~~~L~ 95 (118)
T PF09312_consen 62 RLGIKVSDEEVDEAIANIAKQNNLSVEQLRQQLE 95 (118)
T ss_dssp HCT----HHHHHHHHHHHHHHTT--HHHHHHHCH
T ss_pred HcCCCCCHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 347778887777766 344445555555443
No 206
>PF02209 VHP: Villin headpiece domain; InterPro: IPR003128 Villin is an F-actin bundling protein involved in the maintenance of the microvilli of the absorptive epithelia. The villin-type "headpiece" domain is a modular motif found at the extreme C terminus of larger "core" domains in over 25 cytoskeletal proteins in plants and animals, often in assocation with the Gelsolin repeat. Although the headpiece is classified as an F-actin-binding domain, it has been shown that not all headpiece domains are intrinsically F-actin-binding motifs, surface charge distribution may be an important element for F-actin recognition []. An autonomously folding, 35 residue, thermostable subdomain (HP36) of the full-length 76 amino acid residue villin headpiece, is the smallest known example of a cooperatively folded domain of a naturally occurring protein. The structure of HP36, as determined by NMR spectroscopy, consists of three short helices surrounding a tightly packed hydrophobic core []. ; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1ZV6_A 1QZP_A 1UND_A 2PPZ_A 3TJW_B 1YU8_X 2JM0_A 1WY4_A 3MYC_A 1YU5_X ....
Probab=27.43 E-value=87 Score=15.48 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=6.7
Q ss_pred cccHHHHHHHH
Q 044803 113 FISCEELQNVL 123 (141)
Q Consensus 113 ~I~~~e~~~~l 123 (141)
++|.+||..++
T Consensus 1 YLsd~dF~~vF 11 (36)
T PF02209_consen 1 YLSDEDFEKVF 11 (36)
T ss_dssp GS-HHHHHHHH
T ss_pred CcCHHHHHHHH
Confidence 35667777776
No 207
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=26.84 E-value=2e+02 Score=22.47 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=26.3
Q ss_pred hHHHHHhhcchhccCCCccccHHHHHHHHHHc
Q 044803 95 EISDLLEAFNVFDLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 95 ~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~ 126 (141)
..+..+-++...|.+++|..+..++.+.+...
T Consensus 92 ~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~v 123 (427)
T KOG2557|consen 92 DDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVV 123 (427)
T ss_pred ccHHHHHHHHHHhhccccccchhHHHHHHHHH
Confidence 34566667788899999999999999988874
No 208
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=26.76 E-value=70 Score=21.37 Aligned_cols=52 Identities=12% Similarity=0.131 Sum_probs=31.4
Q ss_pred ChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhCCCcCH
Q 044803 2 CPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFVGKSSLDL 56 (141)
Q Consensus 2 s~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~g~i~~ 56 (141)
|+.....++.+|.... +.|.+...++...|. +..+...+.++.+-..|-|.|
T Consensus 5 s~~~edYL~~Iy~l~~--~~~~~~~~diA~~L~-Vsp~sVt~ml~rL~~~GlV~~ 56 (154)
T COG1321 5 SETEEDYLETIYELLE--EKGFARTKDIAERLK-VSPPSVTEMLKRLERLGLVEY 56 (154)
T ss_pred chHHHHHHHHHHHHHh--ccCcccHHHHHHHhC-CCcHHHHHHHHHHHHCCCeEE
Confidence 4555566777776654 789999998887665 233333344555554444444
No 209
>PLN02223 phosphoinositide phospholipase C
Probab=26.58 E-value=3.7e+02 Score=22.16 Aligned_cols=59 Identities=19% Similarity=0.128 Sum_probs=42.8
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHH---HHhC--CCCCHHHHHHHh--------------hCCCcCHHHHHHHHHhh
Q 044803 7 ADLQRIFKQLDKNGDDQVSLEELNWLL---ERIG--VRLSLEELESFV--------------GKSSLDLNEFLFFWKSI 66 (141)
Q Consensus 7 ~~l~~~F~~~D~~~~g~i~~~e~~~~l---~~l~--~~~~~~~~~~l~--------------~~g~i~~~ef~~~~~~~ 66 (141)
.+++.+|..+- .++|.++.+.+..++ .... ...+.++.+.++ +.+.++++.|..++...
T Consensus 16 ~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s~ 93 (537)
T PLN02223 16 DLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFST 93 (537)
T ss_pred HHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcCc
Confidence 46778888874 667999999999988 4332 455666666666 12559999999988664
No 210
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=26.38 E-value=2.2e+02 Score=19.62 Aligned_cols=48 Identities=13% Similarity=0.027 Sum_probs=29.6
Q ss_pred CCCcccHHHHHHH-HHHhCCCCCHHHHHHHhhCCCcCHHHHHHHHHhhhh
Q 044803 20 GDDQVSLEELNWL-LERIGVRLSLEELESFVGKSSLDLNEFLFFWKSISK 68 (141)
Q Consensus 20 ~~g~i~~~e~~~~-l~~l~~~~~~~~~~~l~~~g~i~~~ef~~~~~~~~~ 68 (141)
=||.|+..+-... ++.++. ...+++...+..|.+++.+++...-..++
T Consensus 10 fDgTi~~~d~~~~~~~~~~~-~~~~~i~~~~~~g~~~~~~~~~~~~~~l~ 58 (219)
T PRK09552 10 FDGTITNNDNIIAIMKKFAP-PEWEELKDDILSQELSIQEGVGQMFQLLP 58 (219)
T ss_pred CCCCCCcchhhHHHHHHhCH-HHHHHHHHHHHhCCcCHHHHHHHHHHhCC
Confidence 3566766554333 444442 34555555557899999998877666554
No 211
>PLN02222 phosphoinositide phospholipase C 2
Probab=26.31 E-value=2.2e+02 Score=23.63 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=40.7
Q ss_pred CHHHHHHHh----hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhcc-CCCcccc
Q 044803 41 SLEELESFV----GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDL-NGDGFIS 115 (141)
Q Consensus 41 ~~~~~~~l~----~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~-~~~g~I~ 115 (141)
...++..+| +++.++.++|..++........ ...+.+..++..+.. .+.+.++
T Consensus 23 ~~~ei~~if~~~~~~~~mt~~~l~~FL~~~Q~~~~----------------------~~~~~~~~ii~~~~~~~~~~~~~ 80 (581)
T PLN02222 23 APREIKTIFEKYSENGVMTVDHLHRFLIDVQKQDK----------------------ATREDAQSIINSASSLLHRNGLH 80 (581)
T ss_pred CcHHHHHHHHHhcCCCCcCHHHHHHHHHHhcCCcc----------------------CCHHHHHHHHHhhhhhhhccCcC
Confidence 344666666 3568899998888876554321 234555666665522 2456799
Q ss_pred HHHHHHHHHH
Q 044803 116 CEELQNVLSR 125 (141)
Q Consensus 116 ~~e~~~~l~~ 125 (141)
.+.|...|..
T Consensus 81 ~~gF~~yL~s 90 (581)
T PLN02222 81 LDAFFKYLFG 90 (581)
T ss_pred HHHHHHHhcC
Confidence 9999998865
No 212
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=26.23 E-value=88 Score=15.04 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=12.6
Q ss_pred cccHHHHHHHHHHcCcCc
Q 044803 113 FISCEELQNVLSRLGLWD 130 (141)
Q Consensus 113 ~I~~~e~~~~l~~~~~~~ 130 (141)
.++..|+++.++..|.+.
T Consensus 3 ~l~v~eLk~~l~~~gL~~ 20 (35)
T PF02037_consen 3 KLTVAELKEELKERGLST 20 (35)
T ss_dssp TSHHHHHHHHHHHTTS-S
T ss_pred cCcHHHHHHHHHHCCCCC
Confidence 356778888888887654
No 213
>smart00153 VHP Villin headpiece domain.
Probab=26.12 E-value=96 Score=15.29 Aligned_cols=10 Identities=30% Similarity=0.604 Sum_probs=6.8
Q ss_pred ccHHHHHHHH
Q 044803 114 ISCEELQNVL 123 (141)
Q Consensus 114 I~~~e~~~~l 123 (141)
++.+||..++
T Consensus 2 LsdeeF~~vf 11 (36)
T smart00153 2 LSDEDFEEVF 11 (36)
T ss_pred CCHHHHHHHH
Confidence 5667777766
No 214
>KOG0843 consensus Transcription factor EMX1 and related HOX domain proteins [Transcription]
Probab=26.10 E-value=1.3e+02 Score=20.97 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=29.7
Q ss_pred ChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh
Q 044803 2 CPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV 49 (141)
Q Consensus 2 s~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (141)
|+.++..|+.+|. +++||.-.|-+.+.+.|++. +.+++--|
T Consensus 110 t~~Ql~~LE~~F~-----~~~Yvvg~eR~~LA~~L~Ls--etQVkvWF 150 (197)
T KOG0843|consen 110 TPEQLLKLEHAFE-----GNQYVVGAERKQLAQSLSLS--ETQVKVWF 150 (197)
T ss_pred CHHHHHHHHHHHh-----cCCeeechHHHHHHHHcCCC--hhHhhhhh
Confidence 6778888999884 58999998988877766544 44444433
No 215
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=26.09 E-value=3.1e+02 Score=21.27 Aligned_cols=56 Identities=9% Similarity=0.048 Sum_probs=41.8
Q ss_pred HhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh-----hCCCcCHHHHHHHHHhhhhh
Q 044803 14 KQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV-----GKSSLDLNEFLFFWKSISKQ 69 (141)
Q Consensus 14 ~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~-----~~g~i~~~ef~~~~~~~~~~ 69 (141)
.-+|..+.|.++.-..+..|..++-+--.++++-++ .+|-+.+-.|..++...++.
T Consensus 117 aA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~isds~gim~~i~~~~fl~evlsl 177 (434)
T KOG4301|consen 117 AAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLISDSRGIMQEIQRDQFLHEVLSL 177 (434)
T ss_pred hhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHcC
Confidence 447889999999999999998876655566677776 56777777777777666544
No 216
>PRK11511 DNA-binding transcriptional activator MarA; Provisional
Probab=25.21 E-value=1.9e+02 Score=18.31 Aligned_cols=55 Identities=16% Similarity=0.209 Sum_probs=40.4
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh-hCCCcCHHHHHHHHHh
Q 044803 6 TADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV-GKSSLDLNEFLFFWKS 65 (141)
Q Consensus 6 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~-~~g~i~~~ef~~~~~~ 65 (141)
...+.++...+..+-...++.+++...+. ++...+..+| ..-.+++.+|+..+..
T Consensus 8 ~~~i~~~~~~I~~~~~~~~sl~~lA~~~g-----~S~~~l~r~Fk~~~G~s~~~~l~~~Rl 63 (127)
T PRK11511 8 AITIHSILDWIEDNLESPLSLEKVSERSG-----YSKWHLQRMFKKETGHSLGQYIRSRKM 63 (127)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHC-----cCHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 34556666666666667799988887665 7788888888 5557899999876554
No 217
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=24.98 E-value=1.7e+02 Score=18.40 Aligned_cols=55 Identities=13% Similarity=0.195 Sum_probs=29.6
Q ss_pred hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCccc
Q 044803 50 GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFI 114 (141)
Q Consensus 50 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I 114 (141)
-.+.+++.+|..++...+.....++-.. ...+ ........+..+|+.+ ++.||++
T Consensus 47 Vp~~~tv~~f~~~irk~l~l~~~~slfl-----~Vn~----~~p~~~~~~~~lY~~~-kd~DGfL 101 (112)
T cd01611 47 VPSDLTVGQFVYIIRKRIQLRPEKALFL-----FVNN----SLPPTSATMSQLYEEH-KDEDGFL 101 (112)
T ss_pred ecCCCCHHHHHHHHHHHhCCCccceEEE-----EECC----ccCCchhHHHHHHHHh-CCCCCEE
Confidence 4567889999988877654322110000 0000 1114456777788877 3446654
No 218
>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=24.81 E-value=63 Score=30.03 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=34.9
Q ss_pred CCcchHHHHHhhcchhccCCCccccHHHHHHHHHHcCcCc
Q 044803 91 DDDGEISDLLEAFNVFDLNGDGFISCEELQNVLSRLGLWD 130 (141)
Q Consensus 91 ~~~~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~ 130 (141)
......+...+++..||++..|.|....+..+++.+..++
T Consensus 1411 Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL 1450 (1592)
T KOG2301|consen 1411 LSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPL 1450 (1592)
T ss_pred CCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCcc
Confidence 3446788899999999999999999999999999986655
No 219
>PF08839 CDT1: DNA replication factor CDT1 like; InterPro: IPR014939 CDT1 is a component of the replication licensing system and promotes the loading of the mini-chromosome maintenance complex onto chromatin. Geminin is an inhibitor of CDT1 and prevents inappropriate re-initiation of replication on an already fired origin. This region of CDT1 binds to Geminin []. ; PDB: 2WVR_C 2ZXX_F.
Probab=24.67 E-value=1.6e+02 Score=19.71 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=28.9
Q ss_pred hhhHHHHHHHHHhhCC------CCCCcccHHHHHHHHHHh-CCCCCHHHHHHHh
Q 044803 3 PLHTADLQRIFKQLDK------NGDDQVSLEELNWLLERI-GVRLSLEELESFV 49 (141)
Q Consensus 3 ~~~~~~l~~~F~~~D~------~~~g~i~~~e~~~~l~~l-~~~~~~~~~~~l~ 49 (141)
|...+.|.++|+.+|. +++-.+++..++..++.+ +.+.+.+.+.++.
T Consensus 2 P~~y~~L~~~F~~ldtv~~~l~~R~~~~tf~~i~~~Ve~~~kr~F~~~~LaQI~ 55 (163)
T PF08839_consen 2 PEKYEFLAELFRALDTVVSMLRNRKETPTFQKIKPSVENMTKRRFTEEHLAQIK 55 (163)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTT---BHHHHHHHHHHHHSS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCcCHHHHHHHH
Confidence 3455677778877772 555578888888888876 6777777777666
No 220
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=24.59 E-value=2.7e+02 Score=20.38 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=23.8
Q ss_pred CChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHH
Q 044803 1 MCPLHTADLQRIFKQLDKNGDDQVSLEELNWLLE 34 (141)
Q Consensus 1 ls~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~ 34 (141)
||.-+...++++++.++.+ +|.++..++..-+.
T Consensus 177 LSySEleAv~~IL~~L~~~-egrlse~eLAerlG 209 (251)
T TIGR02787 177 LSYSELEAVEHIFEELDGN-EGLLVASKIADRVG 209 (251)
T ss_pred ccHhHHHHHHHHHHHhccc-cccccHHHHHHHHC
Confidence 4566777888888887543 68888888776544
No 221
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=24.55 E-value=73 Score=18.83 Aligned_cols=20 Identities=25% Similarity=0.209 Sum_probs=11.8
Q ss_pred HHHHHHHHHcCcCcCCChhHhh
Q 044803 117 EELQNVLSRLGLWDEKSGKDCT 138 (141)
Q Consensus 117 ~e~~~~l~~~~~~~~~s~~e~~ 138 (141)
-|+..+|+.+|..+ |++|..
T Consensus 20 vEIL~ALrkLge~L--s~eE~~ 39 (78)
T PF06384_consen 20 VEILTALRKLGEKL--SPEEEA 39 (78)
T ss_dssp HHHHHHHHHTT------HHHHH
T ss_pred HHHHHHHHHhcCCC--CHHHHH
Confidence 46677888899998 887754
No 222
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=24.38 E-value=1.4e+02 Score=19.60 Aligned_cols=51 Identities=20% Similarity=0.326 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHhhCCCcCHHHHHH
Q 044803 6 TADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFVGKSSLDLNEFLF 61 (141)
Q Consensus 6 ~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~~~g~i~~~ef~~ 61 (141)
...+.++...+..+.+...+..++...+. .+...|..++..|+|.+.+|-.
T Consensus 29 e~~f~kV~~yLr~~p~~~ati~eV~e~tg-----Vs~~~I~~~IreGRL~~~~~~n 79 (137)
T TIGR03826 29 EREFEKVYKFLRKHENRQATVSEIVEETG-----VSEKLILKFIREGRLQLKHFPN 79 (137)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHC-----cCHHHHHHHHHcCCeeccCCCC
Confidence 44556666666655555677777777655 6777777777666666655433
No 223
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=24.15 E-value=1.9e+02 Score=18.14 Aligned_cols=56 Identities=18% Similarity=0.232 Sum_probs=41.1
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh-hCCCcCHHHHHHHHHhh
Q 044803 11 RIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV-GKSSLDLNEFLFFWKSI 66 (141)
Q Consensus 11 ~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~-~~g~i~~~ef~~~~~~~ 66 (141)
.+|-.....++..+|.++++.+|+..|.......+..++ .=...+..+.+..-...
T Consensus 5 aAylL~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~GKdi~eLIa~g~~k 61 (109)
T cd05833 5 AAYLLAVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEGKDVEELIAAGKEK 61 (109)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcCCCHHHHHHHhHhh
Confidence 345555566777899999999999999998888888777 22335777777755553
No 224
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=23.97 E-value=30 Score=24.47 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=24.8
Q ss_pred chHHHHHhhcchhccCCCccccHHHHHHHH
Q 044803 94 GEISDLLEAFNVFDLNGDGFISCEELQNVL 123 (141)
Q Consensus 94 ~~~~~l~~~F~~~D~~~~g~I~~~e~~~~l 123 (141)
.....+...|...|.|.+|+|+.+|...-+
T Consensus 219 pme~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 219 PMEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred cHHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 456678888999999999999999876543
No 225
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=23.89 E-value=64 Score=27.55 Aligned_cols=41 Identities=5% Similarity=0.066 Sum_probs=37.2
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh
Q 044803 9 LQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV 49 (141)
Q Consensus 9 l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (141)
+-..++.||..++|.|..-+|+..+-.++..+.++.++-+|
T Consensus 472 lN~llNvyD~~R~g~irvls~ki~~i~lck~~leek~~ylF 512 (966)
T KOG4286|consen 472 LNWLLNVYDTGRTGRIRVLSFKIGIISLCKAHLEDKYRYLF 512 (966)
T ss_pred HHHHHHhcccCCCcceEEeeehhhHHHHhcchhHHHHHHHH
Confidence 45678899999999999999999999999999999999888
No 226
>COG5611 Predicted nucleic-acid-binding protein, contains PIN domain [General function prediction only]
Probab=23.85 E-value=2.1e+02 Score=18.42 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=32.7
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHHHh--CCCCCHHHHHHHh
Q 044803 8 DLQRIFKQLDKNGDDQVSLEELNWLLERI--GVRLSLEELESFV 49 (141)
Q Consensus 8 ~l~~~F~~~D~~~~g~i~~~e~~~~l~~l--~~~~~~~~~~~l~ 49 (141)
...+.|..+...+.++|+..-+...++-+ ++.+..+.+....
T Consensus 22 ka~Q~f~~~s~~~k~fI~~~vliE~V~vL~~~y~~~rE~i~~VI 65 (130)
T COG5611 22 KAEQFFEELSQKGKLFIPEEVLIELVYVLEHGYKWEREDIYEVI 65 (130)
T ss_pred HHHHHHHhcCcCCCccchHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 46778888888889999998888877766 6777777766655
No 227
>TIGR01321 TrpR trp operon repressor, proteobacterial. This model represents TrpR, the repressor of the trp operon. It is found so far only in the gamma subdivision of the proteobacteria and in Chlamydia trachomatis. All members belong to species capable of tryptophan biosynthesis.
Probab=23.42 E-value=1.8e+02 Score=17.78 Aligned_cols=11 Identities=27% Similarity=0.341 Sum_probs=5.1
Q ss_pred CCCHHHHHHHh
Q 044803 39 RLSLEELESFV 49 (141)
Q Consensus 39 ~~~~~~~~~l~ 49 (141)
.++..++....
T Consensus 55 ~~tQrEIa~~l 65 (94)
T TIGR01321 55 NMSQREIASKL 65 (94)
T ss_pred CCCHHHHHHHh
Confidence 34444444444
No 228
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=23.21 E-value=63 Score=26.67 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=31.4
Q ss_pred HHHHhhcchhccCCCccccHHHHHHHHHHcCcCcCCChhHhh
Q 044803 97 SDLLEAFNVFDLNGDGFISCEELQNVLSRLGLWDEKSGKDCT 138 (141)
Q Consensus 97 ~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~s~~e~~ 138 (141)
...+..|..+|.++.|+++.++...+|+..+... +++-+.
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~--d~~~~~ 632 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKSENVGW--DEDRLH 632 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCC--CHHHHH
Confidence 3344678899999999999999999999988655 555443
No 229
>COG2080 CoxS Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]
Probab=22.99 E-value=1.2e+02 Score=20.55 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=36.1
Q ss_pred HHHHHhhcchhccCCCccccHHHHHHHHHHcCcCcCCChhHhhhc
Q 044803 96 ISDLLEAFNVFDLNGDGFISCEELQNVLSRLGLWDEKSGKDCTRM 140 (141)
Q Consensus 96 ~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~s~~e~~~l 140 (141)
...++++|...|.-..|+=++..+..+-.-+.....+|++||++.
T Consensus 85 l~~vQ~Af~e~~~~QCGyCtpG~Imsa~~lL~~~~~ps~~eI~~~ 129 (156)
T COG2080 85 LHPVQQAFLEHDAFQCGYCTPGQIMSATALLDRNPAPTDEEIREA 129 (156)
T ss_pred cCHHHHHHHHcCCCcCCCCcHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 478999999999999999999999887777644333478888764
No 230
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=22.68 E-value=1.3e+02 Score=15.59 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=25.8
Q ss_pred ChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh
Q 044803 2 CPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV 49 (141)
Q Consensus 2 s~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (141)
++.+...|+..|.. +.+.+..+...+...+| ++..++..-|
T Consensus 8 ~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~--l~~~qV~~WF 48 (59)
T cd00086 8 TPEQLEELEKEFEK-----NPYPSREEREELAKELG--LTERQVKIWF 48 (59)
T ss_pred CHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHC--cCHHHHHHHH
Confidence 45566777777765 55777777777776665 3445554433
No 231
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=22.66 E-value=67 Score=22.58 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.4
Q ss_pred hhccCCCccccHHHHHHHHHHc
Q 044803 105 VFDLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 105 ~~D~~~~g~I~~~e~~~~l~~~ 126 (141)
-+|.|++|.++.+|+..+.+.+
T Consensus 58 ~~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 58 GLDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred hhhhcccCCCCHHHHHHHHHHH
Confidence 5689999999999999988764
No 232
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=22.53 E-value=1e+02 Score=16.04 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=14.0
Q ss_pred Ccccc-HHHHHHHHHHcCcCcCCChhHhhhc
Q 044803 111 DGFIS-CEELQNVLSRLGLWDEKSGKDCTRM 140 (141)
Q Consensus 111 ~g~I~-~~e~~~~l~~~~~~~~~s~~e~~~l 140 (141)
.|.|+ ..++.+-|...|..+ |++.++.+
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~i--s~~l~~~~ 43 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRI--SPKLIEEI 43 (48)
T ss_pred cCChhhHHHHHHHHHHcCccc--CHHHHHHH
Confidence 34554 334444444456666 66655543
No 233
>PF02269 TFIID-18kDa: Transcription initiation factor IID, 18kD subunit; InterPro: IPR003195 This family includes the Spt3 yeast transcription factors and the 18 kDa subunit from human transcription initiation factor IID (TFIID-18). Determination of the crystal structure reveals an atypical histone fold [].; GO: 0006366 transcription from RNA polymerase II promoter; PDB: 1BH9_A 1BH8_A.
Probab=22.21 E-value=1.1e+02 Score=18.53 Aligned_cols=30 Identities=30% Similarity=0.295 Sum_probs=4.2
Q ss_pred HHHHHhhcchhccCCCccccHHHHHHHHHH
Q 044803 96 ISDLLEAFNVFDLNGDGFISCEELQNVLSR 125 (141)
Q Consensus 96 ~~~l~~~F~~~D~~~~g~I~~~e~~~~l~~ 125 (141)
.+-+..|.+.-...|.+.|+.++|.-+++.
T Consensus 37 ~~l~~~A~~~a~~rg~~~i~~eDl~F~lR~ 66 (93)
T PF02269_consen 37 IELCQEAMEVAQRRGSKKIKVEDLLFLLRK 66 (93)
T ss_dssp HHHHHHHHC---------------------
T ss_pred HHHHHHHHHHHhccccCcCcHHHHHHHHhc
Confidence 344445555555556677777777766665
No 234
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=21.80 E-value=1.6e+02 Score=16.28 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=11.9
Q ss_pred CCCCCHHHHHHHh---hCCCcCHHHHHHHHHhh
Q 044803 37 GVRLSLEELESFV---GKSSLDLNEFLFFWKSI 66 (141)
Q Consensus 37 ~~~~~~~~~~~l~---~~g~i~~~ef~~~~~~~ 66 (141)
|..++.+++..++ -+|.++-.+.-.++...
T Consensus 12 g~~Ls~~e~~~~~~~i~~g~~s~~qiaAfL~al 44 (66)
T PF02885_consen 12 GEDLSREEAKAAFDAILDGEVSDAQIAAFLMAL 44 (66)
T ss_dssp T----HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4444555555555 34455544444444443
No 235
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=21.77 E-value=1.1e+02 Score=22.02 Aligned_cols=36 Identities=19% Similarity=0.267 Sum_probs=30.5
Q ss_pred cchhccCCCccccHHHHHHHHHHcCcCcCCChhHhhhc
Q 044803 103 FNVFDLNGDGFISCEELQNVLSRLGLWDEKSGKDCTRM 140 (141)
Q Consensus 103 F~~~D~~~~g~I~~~e~~~~l~~~~~~~~~s~~e~~~l 140 (141)
+..+-.+++|.|....|...+..+.-.+ +..|+..+
T Consensus 157 ~~i~vG~gegQVpL~kL~~~l~KLp~~l--t~~ev~~v 192 (224)
T PF13829_consen 157 HDIIVGNGEGQVPLRKLQKTLMKLPRNL--TKAEVDAV 192 (224)
T ss_pred EEEEecCCCCceeHHHHHHHHHhCCccC--CHHHHHHH
Confidence 4455688999999999999999998888 99888754
No 236
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=21.41 E-value=2.2e+02 Score=23.22 Aligned_cols=59 Identities=17% Similarity=0.017 Sum_probs=37.3
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh--hCC---CcCHHHHHHHHHhhh
Q 044803 9 LQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV--GKS---SLDLNEFLFFWKSIS 67 (141)
Q Consensus 9 l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~--~~g---~i~~~ef~~~~~~~~ 67 (141)
...+|..+-+....-++..+++.++.++|.....++--..| .++ .+.|..++..+..-+
T Consensus 487 ~t~~f~h~lkk~~~~lsdsd~~a~l~slgl~~dk~egi~~F~~~a~s~~gv~yl~v~~~i~sel 550 (612)
T COG5069 487 NTALFNHVLKKDGCGLSDSDLCAWLGSLGLKGDKEEGIRSFGDPAGSVSGVFYLDVLKGIHSEL 550 (612)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHhccccCCccceeeccCCccccccchHHHHHHHHhhhh
Confidence 34456555555566789999999999988776654444444 233 455666666555544
No 237
>TIGR03830 CxxCG_CxxCG_HTH putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.
Probab=21.15 E-value=2.2e+02 Score=17.65 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=32.0
Q ss_pred ChhhHHHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh
Q 044803 2 CPLHTADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV 49 (141)
Q Consensus 2 s~~~~~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~ 49 (141)
+++...++.++...+-+..+|.++..+++.+.... +++..++..++
T Consensus 43 ~~e~~~~~~~~i~~~~~~~~~~~~~~~i~~~r~~~--gltq~~lA~~l 88 (127)
T TIGR03830 43 DPEESKRNSAALADFYRKVDGLLTPPEIRRIRKKL--GLSQREAAELL 88 (127)
T ss_pred cHHHHHHHHHHHHHHHHHccCCcCHHHHHHHHHHc--CCCHHHHHHHh
Confidence 34445555666655667788999999988876654 55677787777
No 238
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=21.14 E-value=89 Score=14.77 Aligned_cols=13 Identities=31% Similarity=0.271 Sum_probs=8.0
Q ss_pred cccHHHHHHHHHH
Q 044803 113 FISCEELQNVLSR 125 (141)
Q Consensus 113 ~I~~~e~~~~l~~ 125 (141)
.||.+|++.+|..
T Consensus 16 Gls~eeir~FL~~ 28 (30)
T PF08671_consen 16 GLSKEEIREFLEF 28 (30)
T ss_dssp T--HHHHHHHHHH
T ss_pred CCCHHHHHHHHHh
Confidence 5788888887753
No 239
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=21.06 E-value=1.1e+02 Score=18.61 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=17.1
Q ss_pred CccccHHHHHHHHHHcCcCcCCChhHh
Q 044803 111 DGFISCEELQNVLSRLGLWDEKSGKDC 137 (141)
Q Consensus 111 ~g~I~~~e~~~~l~~~~~~~~~s~~e~ 137 (141)
++.-+++++..-|+.+|.++ +.+++
T Consensus 39 ns~~s~~~~~~~L~~~Gi~~--~~~~i 63 (101)
T PF13344_consen 39 NSSRSREEYAKKLKKLGIPV--DEDEI 63 (101)
T ss_dssp -SSS-HHHHHHHHHHTTTT----GGGE
T ss_pred CCCCCHHHHHHHHHhcCcCC--CcCEE
Confidence 45678899999999999888 66654
No 240
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=20.75 E-value=71 Score=16.04 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=9.9
Q ss_pred CccccHHHHHHHH
Q 044803 111 DGFISCEELQNVL 123 (141)
Q Consensus 111 ~g~I~~~e~~~~l 123 (141)
-|.||.+|++.+-
T Consensus 24 ~g~IT~eey~eIT 36 (40)
T PF09693_consen 24 AGWITKEEYKEIT 36 (40)
T ss_pred cCeECHHHHHHhh
Confidence 3789999888763
No 241
>PF10897 DUF2713: Protein of unknown function (DUF2713); InterPro: IPR020404 This entry contains proteins with no known function. In some organisms this represents the C-terminal domain of a fusion protein with YjbL.
Probab=20.70 E-value=2.2e+02 Score=20.15 Aligned_cols=54 Identities=20% Similarity=0.171 Sum_probs=31.9
Q ss_pred hCCCcCHHHHHHHHHhhhhhccCCCCCccccccccCCCCCCCCcchHHHHHhhcchhccCCCcccc
Q 044803 50 GKSSLDLNEFLFFWKSISKQNNNKVDDHEVKDEINGDDNENDDDGEISDLLEAFNVFDLNGDGFIS 115 (141)
Q Consensus 50 ~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~F~~~D~~~~g~I~ 115 (141)
-.|.++|..++.-++............+..+. ...+.+-..-+.||++..|.|-
T Consensus 174 d~geldFn~iL~~Mk~~~~Egk~d~~~iTKM~------------~Aa~kLI~F~qSfDPdSte~I~ 227 (246)
T PF10897_consen 174 DKGELDFNDILDKMKLQVNEGKLDPDIITKMR------------DAAPKLIKFVQSFDPDSTEPIK 227 (246)
T ss_pred hcCCCcHHHHHHHHHHhhccCCcCcHHHHHHH------------HhhHHHHHHHHhcCCCCcCcee
Confidence 57899999999988776543311111111111 2344455556678899888764
No 242
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=20.69 E-value=91 Score=21.69 Aligned_cols=55 Identities=13% Similarity=0.320 Sum_probs=38.9
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHh---------hCCCcCHHHHHH
Q 044803 7 ADLQRIFKQLDKNGDDQVSLEELNWLLERIGVRLSLEELESFV---------GKSSLDLNEFLF 61 (141)
Q Consensus 7 ~~l~~~F~~~D~~~~g~i~~~e~~~~l~~l~~~~~~~~~~~l~---------~~g~i~~~ef~~ 61 (141)
..++++|..||...=-..+-+++..++..-++--....|+.+. ....-+|.+|+=
T Consensus 54 e~fr~aF~~Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~NA~~~l~i~~e~gSf~~ylW 117 (187)
T PRK10353 54 ENYRACFHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEPFADFVW 117 (187)
T ss_pred HHHHHHHcCCCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHHHHHHHHHHHhcCCHHHHHh
Confidence 4688999999988877788888888887655544566666655 222347777763
No 243
>PRK05988 formate dehydrogenase subunit gamma; Validated
Probab=20.56 E-value=1.8e+02 Score=19.50 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=12.6
Q ss_pred ChhhHHHHHHHHHhhCCCC
Q 044803 2 CPLHTADLQRIFKQLDKNG 20 (141)
Q Consensus 2 s~~~~~~l~~~F~~~D~~~ 20 (141)
+|....++..++..+...+
T Consensus 4 ~~~~~~~i~~ii~~y~~~~ 22 (156)
T PRK05988 4 EPWDAARIAAIIAEHKHLE 22 (156)
T ss_pred chhHHHHHHHHHHHcCCCH
Confidence 4556677777787776444
No 244
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=20.32 E-value=74 Score=16.15 Aligned_cols=20 Identities=30% Similarity=0.310 Sum_probs=16.8
Q ss_pred ccCCCccccHHHHHHHHHHc
Q 044803 107 DLNGDGFISCEELQNVLSRL 126 (141)
Q Consensus 107 D~~~~g~I~~~e~~~~l~~~ 126 (141)
+....|-+|.+++++.++.=
T Consensus 7 ~g~~~GP~s~~el~~l~~~g 26 (45)
T PF14237_consen 7 NGQQQGPFSLEELRQLISSG 26 (45)
T ss_pred CCeEECCcCHHHHHHHHHcC
Confidence 66678999999999998774
Done!