BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044806
(70 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TIN|A Chain A, Three-Dimensional Structure In Solution Of Cucurbita
Maxima Trypsin Inhibitor-V Determined By Nmr
Spectroscopy
Length = 69
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 43/67 (64%)
Query: 4 ECKGKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIV 63
C GKSSWP LVGV G VA IER+NP V A IL EG+ V D C RV +WV+ G+V
Sbjct: 3 SCPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLV 62
Query: 64 VDVPTIG 70
V P IG
Sbjct: 63 VSPPRIG 69
>pdb|1MIT|A Chain A, Recombinant Cucurbita Maxima Trypsin Inhibitor V
(Rcmti-V) (Nmr, Minimized Average Structure)
Length = 69
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 43/67 (64%)
Query: 4 ECKGKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIV 63
C GKSSWP LVGV G VA IER+NP V A IL EG+ V D C RV +WV+ G+V
Sbjct: 3 SCPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLV 62
Query: 64 VDVPTIG 70
V P IG
Sbjct: 63 VSPPRIG 69
>pdb|1VBW|A Chain A, Crystal Structure Of Bitter Gourd Trypsin Inhibitor
Length = 68
Score = 70.1 bits (170), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/67 (55%), Positives = 40/67 (59%)
Query: 4 ECKGKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIV 63
C+GKSSWP+LVG G A IERENP V A I+ GS D C RV VWV GIV
Sbjct: 2 RCQGKSSWPQLVGSTGAAAKAVIERENPRVRAVIIKVGSGATKDFRCDRVRVWVTERGIV 61
Query: 64 VDVPTIG 70
PTIG
Sbjct: 62 ARPPTIG 68
>pdb|3RDY|A Chain A, Crystal Structure Of Buckwheat Trypsin Inhibitor Rbti At
1.84 Angstrom Resolution
pdb|3RDZ|C Chain C, Crystal Structure Of Rbti-Trypsin Complex At 2.26
Angstrom Resolution
pdb|3RDZ|D Chain D, Crystal Structure Of Rbti-Trypsin Complex At 2.26
Angstrom Resolution
Length = 79
Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 42/66 (63%)
Query: 4 ECKGKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIV 63
+C GK WPELVG G AA+ IE EN V A +L EGS V D C RV+V+VD G+V
Sbjct: 13 QCSGKQEWPELVGERGSKAAKIIENENEDVRAIVLPEGSAVPRDLRCDRVWVFVDERGVV 72
Query: 64 VDVPTI 69
VD P +
Sbjct: 73 VDTPVV 78
>pdb|1DWM|A Chain A, Solution Structure Of Linum Usitatissinum Trypsin
Inhibitor (Luti)
Length = 70
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 44/66 (66%)
Query: 4 ECKGKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIV 63
C GK++WPELVG G +AA T+EREN V A +L EGS + D C RV+V V+ +G+V
Sbjct: 4 RCPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVV 63
Query: 64 VDVPTI 69
VP I
Sbjct: 64 TSVPHI 69
>pdb|1HYM|A Chain A, Hydrolyzed Trypsin Inhibitor (Cmti-V, Minimized Average
Nmr Structure)
Length = 45
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 28/40 (70%)
Query: 5 CKGKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIV 44
C GKSSWP LVGV G VA IER+NP V A IL EG+ V
Sbjct: 4 CPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPV 43
>pdb|1COA|I Chain I, The Effect Of Cavity Creating Mutations In The
Hydrophobic Core Of Chymotrypsin Inhibitor 2
Length = 64
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG + A + I ++ P +L G+IV ++ RV ++VD V +VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNVAEVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1TO1|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
Length = 64
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG + A + I ++ P +L G+IV ++ RV ++VD + VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEARIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1LW6|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
Length = 64
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG + A + I ++ P +L G+IV ++ RV ++VD + VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1Y1K|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
Length = 64
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG + A + I ++ P +L G+IV ++ RV ++VD + VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVAMEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1TM1|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
Length = 64
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG + A + I ++ P +L G+IV ++ RV ++VD + VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1Y3D|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
Length = 64
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG + A + I ++ P +L G+IV ++ RV ++VD + VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVALFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1Y3C|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
Length = 64
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG + A + I ++ P +L G+IV ++ RV ++VD + VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYAIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1YPC|I Chain I, Direct Observation Of Better Hydration At The N-Terminus
Of An Alpha-Helix With Glycine Rather Than Alanine As
N-Cap
Length = 64
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG A + I ++ P +L G+IV ++ RV ++VD + VP
Sbjct: 2 KTEWPELVGKSVAAAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1YPA|I Chain I, Direct Observation Of Better Hydration At The N-Terminus
Of An Alpha-Helix With Glycine Rather Than Alanine As
N-Cap
Length = 64
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG A + I ++ P +L G+IV ++ RV ++VD + VP
Sbjct: 2 KTEWPELVGKAVAAAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|2CI2|I Chain I, Crystal And Molecular Structure Of The Serine Proteinase
Inhibitor Ci-2 From Barley Seeds
pdb|2SNI|I Chain I, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 83
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG + A + I ++ P +L G+IV ++ RV ++VD + +VP
Sbjct: 21 KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAEVP 80
Query: 68 TIG 70
+G
Sbjct: 81 RVG 83
>pdb|1Y33|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
Length = 64
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG + A + I ++ P +L G+IV ++ RV ++VD + VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVPMEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1TMG|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
Length = 64
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG + A + I ++ P +L G+IV + RV ++VD + VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTFEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|3CI2|A Chain A, Refinement Of The Three-Dimensional Solution Structure
Of Barley Serine Proteinase Inhibitor 2 And Comparison
With The Structures In Crystals
Length = 66
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG + A + I ++ P +L G+IV ++ RV ++VD + VP
Sbjct: 4 KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 63
Query: 68 TIG 70
+G
Sbjct: 64 RVG 66
>pdb|1Y3B|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
Length = 64
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG + A + I ++ P +L G+IV + RV ++VD + VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMSYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1YPB|I Chain I, Direct Observation Of Better Hydration At The N-Terminus
Of An Alpha-Helix With Glycine Rather Than Alanine As
N-Cap
Length = 64
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG A + I ++ P +L G+IV ++ RV ++VD + VP
Sbjct: 2 KTEWPELVGKGVAAAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1Y34|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
Length = 64
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG + A + I ++ P +L G+IV + RV ++VD + VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMAYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1TM7|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
Length = 64
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG + A + I ++ P +L G+IV + RV ++VD + VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTYEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1TM5|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
Length = 64
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG + A + I ++ P +L G+IV + RV ++VD + VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTAEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1Y3F|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
Length = 64
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG + A + I ++ P +L G+IV ++ RV + VD + VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDRVRLAVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1TM3|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TO2|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
Length = 64
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG + A + I ++ P +L G+IV + RV ++VD + VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTKEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1Y4A|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 64
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG + A + I ++ P +L G+IV RV ++VD + VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTRSYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1TM4|I Chain I, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
Length = 64
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 33/63 (52%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG + A + I ++ P +L G+IV + RV ++VD + VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTGEYRIDRVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1Y48|I Chain I, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
Length = 64
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVP 67
K+ WPELVG + A + I ++ P +L G+IV ++ V ++VD + VP
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTMEYRIDAVRLFVDRLDNIAQVP 61
Query: 68 TIG 70
+G
Sbjct: 62 RVG 64
>pdb|1CSE|I Chain I, The High-Resolution X-Ray Crystal Structure Of The
Complex Formed Between Subtilisin Carlsberg And Eglin
C, An Elastase Inhibitor From The Leech Hirudo
Medicinalis. Structural Analysis, Subtilisin Structure
And Interface Geometry
pdb|2SEC|I Chain I, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 70
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 9 SSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLD-RYCR-RVYVWVDTNGIVVDV 66
S+PE+VG A E P + + L EGS V LD RY R RV+ TN +V V
Sbjct: 8 KSFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTLDLRYNRVRVFYNPGTN-VVNHV 66
Query: 67 PTIG 70
P +G
Sbjct: 67 PHVG 70
>pdb|1MEE|I Chain I, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 64
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 9 SSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLD-RYCR-RVYVWVDTNGIVVDV 66
S+PE+VG A E P + + L EGS V LD RY R RV+ TN +V V
Sbjct: 2 KSFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTLDLRYNRVRVFYNPGTN-VVNHV 60
Query: 67 PTIG 70
P +G
Sbjct: 61 PHVG 64
>pdb|1TEC|I Chain I, Crystallographic Refinement By Incorporation Of
Molecular Dynamics. The Thermostable Serine Protease
Thermitase Complexed With Eglin-C
pdb|2TEC|I Chain I, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|I Chain I, Calcium Binding To Thermitase. Crystallographic Studies
Of Thermitase At 0, 5 And 100 Mm Calcium
pdb|1ACB|I Chain I, Crystal And Molecular Structure Of The Bovine
Alpha-Chymotrypsin-Eglin C Complex At 2.0 Angstroms
Resolution
pdb|1EGL|A Chain A, The Solution Structure Of Eglin C Based On Measurements
Of Many Noes And Coupling Constants And Its Comparison
With X- Ray Structures
Length = 70
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 9 SSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLD-RYCR-RVYVWVDTNGIVVDV 66
S+PE+VG A E P + L EGS V LD RY R RV+ TN +V V
Sbjct: 8 KSFPEVVGKTVDQAREYFTLHYPQYDVYFLPEGSPVTLDLRYNRVRVFYNPGTN-VVNHV 66
Query: 67 PTIG 70
P +G
Sbjct: 67 PHVG 70
>pdb|4H4F|B Chain B, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound
To Inhibitor Eglin C From Hirudo Medicinalis
Length = 70
Score = 32.7 bits (73), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 10 SWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLD-RYCR-RVYVWVDTNGIVVDVP 67
S+PE+VG A E P + L EGS V LD RY R RV+ TN +V VP
Sbjct: 9 SFPEVVGKTVDQAREYFTLHYPQYDVYFLPEGSPVTLDLRYNRVRVFYNPGTN-VVNHVP 67
Query: 68 TIG 70
+G
Sbjct: 68 HVG 70
>pdb|1SIB|I Chain I, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
Length = 70
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 9 SSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVD-VP 67
S+PE+VG A E P + L EGS V LD RV V+ + VV+ VP
Sbjct: 8 KSFPEVVGKTVDQAREYFTLHYPQYDVYFLPEGSPVTLDLRYNRVKVFYNPGTNVVNHVP 67
Query: 68 TIG 70
+G
Sbjct: 68 HVG 70
>pdb|1SBN|I Chain I, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
Length = 70
Score = 30.8 bits (68), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 9 SSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLD-RYCR-RVYVWVDTNGIVVDV 66
S+PE+VG A E P + + L EGS V D RY R RV+ TN +V V
Sbjct: 8 KSFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTRDLRYNRVRVFYNPGTN-VVNHV 66
Query: 67 PTIG 70
P +G
Sbjct: 67 PHVG 70
>pdb|4B2B|B Chain B, Structure Of The Factor Xa-Like Trypsin Variant
Triple-Ala (Tgpa) In Complex With Eglin C
pdb|4B2B|D Chain D, Structure Of The Factor Xa-Like Trypsin Variant
Triple-Ala (Tgpa) In Complex With Eglin C
pdb|4B2C|B Chain B, Structure Of The Factor Xa-Like Trypsin Variant
Triple-Ala (Tpa) In Complex With Eglin C
pdb|4B2C|D Chain D, Structure Of The Factor Xa-Like Trypsin Variant
Triple-Ala (Tpa) In Complex With Eglin C
Length = 71
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 9 SSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLD-RYCR-RVYVWVDTNGIVVDV 66
S+PE+VG A E P + L EGS V D RY R RV+ TN +V V
Sbjct: 9 KSFPEVVGKTVDQAREYFTLHYPQYDVYFLPEGSPVTKDLRYNRVRVFYNPGTN-VVNHV 67
Query: 67 PTIG 70
P +G
Sbjct: 68 PHVG 71
>pdb|4B1T|B Chain B, Structure Of The Factor Xa-Like Trypsin Variant
Triple-Ala ( Ta) In Complex With Eglin C
pdb|4B1T|D Chain D, Structure Of The Factor Xa-Like Trypsin Variant
Triple-Ala ( Ta) In Complex With Eglin C
Length = 70
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 9 SSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLD-RYCR-RVYVWVDTNGIVVDV 66
S+PE+VG A E P + L EGS V D RY R RV+ TN +V V
Sbjct: 8 KSFPEVVGKTVDQAREYFTLHYPQYDVYFLPEGSPVTKDLRYNRVRVFYNPGTN-VVNHV 66
Query: 67 PTIG 70
P +G
Sbjct: 67 PHVG 70
>pdb|4B2A|B Chain B, Structure Of The Factor Xa-Like Trypsin Variant
Triple-Ala (Tga) In Complex With Eglin C
pdb|4B2A|D Chain D, Structure Of The Factor Xa-Like Trypsin Variant
Triple-Ala (Tga) In Complex With Eglin C
Length = 66
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 9 SSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLD-RYCR-RVYVWVDTNGIVVDV 66
S+PE+VG A E P + L EGS V D RY R RV+ TN +V V
Sbjct: 4 KSFPEVVGKTVDQAREYFTLHYPQYDVYFLPEGSPVTKDLRYNRVRVFYNPGTN-VVNHV 62
Query: 67 PTIG 70
P +G
Sbjct: 63 PHVG 66
>pdb|1CIS|A Chain A, Context Dependence Of Protein Secondary Structure
Formation. The Three-Dimensional Structure And
Stability Of A Hybrid Between Chymotrypsin Inhibitor 2
And Helix E From Subtilisin Carlsberg
Length = 66
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSI--VFLDRYCRRVYVWVDTNGIVVD 65
K+ WPELVG + A + I ++ P +L + ++ + + RV + VD +
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPEAQIIVLEKQAVDNAYAEYRIDRVRLAVDKLDNIAQ 61
Query: 66 VPTIG 70
VP +G
Sbjct: 62 VPRVG 66
>pdb|1HYM|B Chain B, Hydrolyzed Trypsin Inhibitor (Cmti-V, Minimized Average
Nmr Structure)
Length = 24
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 47 DRYCRRVYVWVDTNGIVVDVPTIG 70
D C RV +WV+ G+VV P IG
Sbjct: 1 DFRCNRVRIWVNKRGLVVSPPRIG 24
>pdb|4HL9|A Chain A, Crystal Structure Of Antibiotic Biosynthesis Monooxygenase
pdb|4HL9|B Chain B, Crystal Structure Of Antibiotic Biosynthesis Monooxygenase
pdb|4HL9|C Chain C, Crystal Structure Of Antibiotic Biosynthesis Monooxygenase
pdb|4HL9|D Chain D, Crystal Structure Of Antibiotic Biosynthesis Monooxygenase
pdb|4HL9|E Chain E, Crystal Structure Of Antibiotic Biosynthesis Monooxygenase
pdb|4HL9|F Chain F, Crystal Structure Of Antibiotic Biosynthesis Monooxygenase
pdb|4HL9|G Chain G, Crystal Structure Of Antibiotic Biosynthesis Monooxygenase
pdb|4HL9|H Chain H, Crystal Structure Of Antibiotic Biosynthesis Monooxygenase
pdb|4HL9|I Chain I, Crystal Structure Of Antibiotic Biosynthesis Monooxygenase
Length = 118
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 11 WPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLD 47
WP+ ++ A E R P+++AH +G++V D
Sbjct: 78 WPDRAALDIHXATEHFTRLVPLINAHQRQDGTVVLXD 114
>pdb|1CQ4|A Chain A, Ci2 Mutant With Tetraglutamine (mgqqqqgm) Replacing
Met59
Length = 47
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCR 51
K+ WPELVG + A + I ++ P +L G+IV + + +
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMGQQQQ 45
>pdb|1CIQ|A Chain A, Complex Of Two Fragments Of Ci2, Residues 1-40 And 41-64
Length = 40
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFL 46
K+ WPELVG + A + I ++ P +L G+IV +
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTM 40
>pdb|1CIR|A Chain A, Complex Of Two Fragments Of Ci2 [(1-40)(Dot)(41-64)]
Length = 40
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 8 KSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIV 44
K+ WPELVG + A + I ++ P +L G+IV
Sbjct: 2 KTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIV 38
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,232,717
Number of Sequences: 62578
Number of extensions: 71851
Number of successful extensions: 215
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 46
length of query: 70
length of database: 14,973,337
effective HSP length: 40
effective length of query: 30
effective length of database: 12,470,217
effective search space: 374106510
effective search space used: 374106510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)