Query 044806
Match_columns 70
No_of_seqs 106 out of 315
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 11:57:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044806.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044806hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1mit_A RCMTI-V, trypsin inhibi 100.0 1.2E-38 4.1E-43 185.5 7.6 68 3-70 2-69 (69)
2 1vbw_A Trypsin inhibitor BGIT; 100.0 1.4E-38 4.8E-43 184.8 6.8 68 3-70 1-68 (68)
3 1dwm_A LUTI, linum usitatissin 100.0 7.6E-37 2.6E-41 178.0 7.3 67 4-70 4-70 (70)
4 1to2_I Chymotrypsin inhibitor 100.0 5.4E-36 1.8E-40 172.1 5.9 64 7-70 1-64 (64)
5 3rdy_A BWI-1=protease inhibito 100.0 1.3E-35 4.4E-40 177.0 6.9 65 5-69 14-78 (79)
6 2ci2_I Chymotrypsin inhibitor 100.0 2.9E-35 1E-39 176.5 6.5 66 5-70 18-83 (83)
7 1cse_I Eglin C; complex(serine 100.0 2.9E-35 9.8E-40 171.7 5.8 65 6-70 5-70 (70)
8 1cq4_A Protein (serine protein 99.9 1.3E-26 4.4E-31 126.2 4.4 47 7-53 1-47 (47)
9 1hym_A CMTI-V, hydrolyzed cucu 99.8 1.1E-21 3.6E-26 106.1 4.9 43 4-46 3-45 (45)
10 1hym_B CMTI-V, hydrolyzed cucu 99.4 2.9E-13 9.8E-18 65.4 2.7 24 47-70 1-24 (26)
11 3ouv_A Serine/threonine protei 77.1 1.4 4.8E-05 23.7 1.9 22 9-30 8-29 (71)
12 2kuf_A PKNB, serine/threonine- 71.3 7 0.00024 23.3 4.3 21 9-29 8-28 (139)
13 2kud_A PKNB, serine/threonine- 53.8 14 0.00046 22.1 3.2 22 9-30 9-30 (140)
14 3ge3_E Toluene-4-monooxygenase 52.8 14 0.00048 22.1 3.1 24 23-46 28-51 (103)
15 2kue_A PKNB, serine/threonine- 48.7 9.6 0.00033 22.8 1.9 23 9-31 76-98 (138)
16 2kui_A PKNB, serine/threonine- 47.7 49 0.0017 21.9 5.5 57 10-68 10-80 (275)
17 2yh9_A Small protein A, BAME p 43.0 23 0.00079 19.8 2.9 18 49-66 54-71 (88)
18 1u07_A TONB protein; beta-hair 40.9 20 0.00067 19.8 2.3 14 53-66 29-42 (90)
19 3db7_A Putative calcium-regula 36.7 67 0.0023 19.1 4.6 44 22-66 81-125 (127)
20 3dlm_A Histone-lysine N-methyl 34.6 33 0.0011 23.0 3.0 59 5-63 125-187 (213)
21 2km7_A Small protein A; BAME, 31.4 33 0.0011 19.8 2.3 17 50-66 69-85 (102)
22 2jo6_A Nitrite reductase [NAD( 31.2 24 0.00081 20.1 1.6 27 39-65 17-44 (113)
23 1vm9_A Toluene-4-monooxygenase 31.0 40 0.0014 19.0 2.6 28 39-66 12-40 (111)
24 2oqc_A Penicillin V acylase; N 30.7 40 0.0014 23.1 3.0 52 17-68 112-176 (327)
25 4a7k_A Aldos-2-ulose dehydrata 30.3 41 0.0014 27.1 3.2 37 32-68 469-511 (900)
26 2k9k_A TONB2; metal transport; 30.1 27 0.00092 19.7 1.8 15 52-66 43-57 (106)
27 3c3d_A 2-phospho-L-lactate tra 30.0 41 0.0014 23.5 2.9 23 19-45 174-196 (311)
28 2i7f_A Ferredoxin component of 29.2 52 0.0018 18.4 2.9 27 38-65 13-40 (108)
29 3uv9_A TRIM5alpha, tripartite 29.0 38 0.0013 21.5 2.5 21 44-64 122-143 (186)
30 3c0d_A Putative nitrite reduct 28.1 33 0.0011 19.9 1.9 27 39-65 16-42 (119)
31 3pjy_A Hypothetical signal pep 27.9 31 0.0011 21.2 1.8 13 54-66 72-84 (136)
32 3m7a_A Uncharacterized protein 27.7 31 0.0011 21.4 1.8 13 54-66 86-98 (140)
33 2p0y_A Hypothetical protein LP 27.4 47 0.0016 23.5 2.9 25 17-45 177-201 (341)
34 1lr0_A TOLA protein; domain-sw 27.4 41 0.0014 20.2 2.3 17 51-67 54-70 (129)
35 3elg_A Uncharacterized peripla 25.7 1.1E+02 0.0037 18.1 4.5 43 23-66 83-126 (128)
36 3djc_A Type III pantothenate k 25.3 48 0.0016 22.3 2.6 39 10-48 102-140 (266)
37 2bjf_A Choloylglycine hydrolas 24.9 68 0.0023 21.9 3.3 30 39-68 149-178 (329)
38 3py9_A Protein kinase; pasta, 24.8 40 0.0014 22.8 2.1 24 6-29 4-27 (294)
39 2q7x_A UPF0052 protein SP_1565 24.4 50 0.0017 23.1 2.6 25 17-45 173-197 (326)
40 2o2z_A Hypothetical protein; s 23.6 61 0.0021 22.8 2.9 23 19-45 169-191 (323)
41 2ppv_A Uncharacterized protein 23.1 64 0.0022 22.8 2.9 23 19-45 168-190 (332)
42 1rie_A Rieske iron-sulfur prot 22.6 64 0.0022 19.0 2.5 21 38-58 14-34 (129)
43 2inp_L Phenol hydroxylase comp 22.1 64 0.0022 18.6 2.3 14 22-35 18-31 (89)
44 3dqy_A Toluene 1,2-dioxygenase 21.4 65 0.0022 17.9 2.3 27 38-65 11-37 (106)
45 3al9_A Plexin-A2; beta-propell 21.2 51 0.0017 24.4 2.2 31 39-69 447-479 (539)
46 2vok_A 52 kDa RO protein; poly 20.9 53 0.0018 20.9 2.0 18 47-64 122-140 (188)
47 1yr1_A Divib, FTSQ, cell-divis 20.8 72 0.0025 18.7 2.5 54 11-64 38-94 (119)
48 3oam_A 3-deoxy-manno-octuloson 20.2 77 0.0026 20.3 2.7 18 48-65 137-154 (252)
No 1
>1mit_A RCMTI-V, trypsin inhibitor V; serine protease inhibitor (RCMTI-V); NMR {Cucurbita maxima} SCOP: d.40.1.1 PDB: 1tin_A
Probab=100.00 E-value=1.2e-38 Score=185.49 Aligned_cols=68 Identities=56% Similarity=0.915 Sum_probs=66.7
Q ss_pred ccCCCCCCCccccccchHHHHHHHHhhCCCCeEEEecCCCccccCccCCcEEEEeCCCCcEEecCcCC
Q 044806 3 FECKGKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVPTIG 70 (70)
Q Consensus 3 ~~~~~k~~WpeLVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vTmDyr~dRV~v~vD~~g~V~~vP~vG 70 (70)
|+|++|++||||||+++++|+.+|++|+|++.++||++|+++||||||||||||+|++|+|+++|+||
T Consensus 2 ~~c~~K~sWpELVG~~~~~A~~~I~~d~p~v~v~vl~~g~~vT~Dfr~~RV~V~vD~~g~V~~vP~vG 69 (69)
T 1mit_A 2 SSCPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTKDFRCNRVRIWVNKRGLVVSPPRIG 69 (69)
T ss_dssp CCCSSCSCCCCCTTSHHHHHHHHHHHHCTTSEEEEEETTCCCCSSCCTTEEEEEEETTTEEECCSSCC
T ss_pred CCCCCcCcCHHHcCccHHHHHHHHHHHCCCCeEEEecCCCccCCCcCCCEEEEEECCCCcEEeCCcCC
Confidence 67999999999999999999999999999999999999999999999999999999999999999998
No 2
>1vbw_A Trypsin inhibitor BGIT; BGTI, protein binding; HET: TLA; 0.93A {Momordica charantia}
Probab=100.00 E-value=1.4e-38 Score=184.76 Aligned_cols=68 Identities=54% Similarity=0.843 Sum_probs=66.5
Q ss_pred ccCCCCCCCccccccchHHHHHHHHhhCCCCeEEEecCCCccccCccCCcEEEEeCCCCcEEecCcCC
Q 044806 3 FECKGKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVPTIG 70 (70)
Q Consensus 3 ~~~~~k~~WpeLVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vTmDyr~dRV~v~vD~~g~V~~vP~vG 70 (70)
|+|++|++||||||+++++|+.+|++|+|++.+++|++|+++||||||||||||+|++|+|+++|+||
T Consensus 1 ~~c~~K~sWpELVG~~~~~A~~~I~~d~p~~~v~vl~~g~~vT~Df~~~RV~v~vD~~g~V~~vP~vG 68 (68)
T 1vbw_A 1 SRCQGKSSWPQLVGSTGAAAKAVIERENPRVRAVIIKVGSGATKDFRCDRVRVWVTERGIVARPPTIG 68 (68)
T ss_dssp CCSCSCCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTSCCCCSCCTTEEEEEECTTSBBCSCCEEC
T ss_pred CCCCCCCcCHHHCCcCHHHHHHHHHHHCCCCeEEEecCCCccCCCcCCCEEEEEECCCCcEEecCcCC
Confidence 56999999999999999999999999999999999999999999999999999999999999999998
No 3
>1dwm_A LUTI, linum usitatissinum trypsin inhibitor; serine proteinase inhibitor; NMR {Linum usitatissimum} SCOP: d.40.1.1
Probab=100.00 E-value=7.6e-37 Score=178.01 Aligned_cols=67 Identities=51% Similarity=0.838 Sum_probs=65.8
Q ss_pred cCCCCCCCccccccchHHHHHHHHhhCCCCeEEEecCCCccccCccCCcEEEEeCCCCcEEecCcCC
Q 044806 4 ECKGKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVPTIG 70 (70)
Q Consensus 4 ~~~~k~~WpeLVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vTmDyr~dRV~v~vD~~g~V~~vP~vG 70 (70)
+|++|++||||||+++++|+.+|++|+|++.+++|+||+++|||||+||||||+|++|+|+++|+||
T Consensus 4 ~c~~k~sWpelVG~~~~~A~~~i~~e~p~~~vrvl~pg~~vT~Dfr~~RV~v~vD~~g~V~~vP~ig 70 (70)
T 1dwm_A 4 RCPGKNAWPELVGKSGNMAAATVERENRNVHAIVLKEGSAMTKDFRCDRVWVIVNDHGVVTSVPHIT 70 (70)
T ss_dssp CCSSCSBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCCCCSCCTTEEEEEECTTSBBCSCCBBC
T ss_pred cCCChhHhHHHcCCcHHHHHHHHHHhCCCceEEEecCCCccCCccCCCeEEEEECCCCeEEeCCcCC
Confidence 5999999999999999999999999999999999999999999999999999999999999999998
No 4
>1to2_I Chymotrypsin inhibitor 2; serine protease, hydrolase; HET: CIT 15P; 1.30A {Hordeum vulgare subsp} SCOP: d.40.1.1 PDB: 1tm3_I* 1tm5_I* 1tm1_I* 1tm7_I* 1tm4_I* 1y4a_I* 1y4d_I 1tmg_I* 1lw6_I 1y3b_I* 1y1k_I* 1y34_I* 1y48_I* 1y3d_I* 1y3c_I* 1y33_I* 1to1_I* 1y3f_I* 3ci2_A 1coa_I ...
Probab=100.00 E-value=5.4e-36 Score=172.13 Aligned_cols=64 Identities=33% Similarity=0.517 Sum_probs=62.2
Q ss_pred CCCCCccccccchHHHHHHHHhhCCCCeEEEecCCCccccCccCCcEEEEeCCCCcEEecCcCC
Q 044806 7 GKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVPTIG 70 (70)
Q Consensus 7 ~k~~WpeLVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vTmDyr~dRV~v~vD~~g~V~~vP~vG 70 (70)
.|+|||||||+++++|+.+|++|+|++.+++|++|+++||||||||||||+|++|+|+++|+||
T Consensus 1 ~k~sWPELVG~~~~~A~~~I~~d~p~v~v~vl~~g~~vT~Df~~~RV~v~vD~~g~V~~vP~iG 64 (64)
T 1to2_I 1 MKTEWPELVGKSVEEAKKVILQDKPAAQIIVLPVGTIVTKEYRIDRVRLFVDRLDNIAQVPRVG 64 (64)
T ss_dssp -CCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCEEECBCCTTEEEEEECTTSBBCSCCEEC
T ss_pred CCcCCHhhCCCcHHHHHHHHHHHCCCCeEEEecCCCccCCCcCCCEEEEEECCCCeEEecCcCC
Confidence 4899999999999999999999999999999999999999999999999999999999999998
No 5
>3rdy_A BWI-1=protease inhibitor/trypsin inhibitor; serine protease inhibitor, potato inhibitor I, trypsin inhib trypsin, hydrolase inhibitor; 1.84A {Fagopyrum esculentum} SCOP: d.40.1.0 PDB: 3rdz_C
Probab=100.00 E-value=1.3e-35 Score=176.98 Aligned_cols=65 Identities=54% Similarity=0.869 Sum_probs=64.1
Q ss_pred CCCCCCCccccccchHHHHHHHHhhCCCCeEEEecCCCccccCccCCcEEEEeCCCCcEEecCcC
Q 044806 5 CKGKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVPTI 69 (70)
Q Consensus 5 ~~~k~~WpeLVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vTmDyr~dRV~v~vD~~g~V~~vP~v 69 (70)
|++|+|||||||+++++|+++|++|+|+++++||++|+++||||||||||||+|++|+|+++|+|
T Consensus 14 ~~~K~sWPELVG~~~~~A~~~I~~e~P~v~v~Vl~~Gs~VT~Dfr~~RVrV~VD~~g~V~~~P~i 78 (79)
T 3rdy_A 14 CSGKQEWPELVGERGSKAAKIIENENEDVRAIVLPEGSAVPRDLRCDRVWVFVDERGVVVDTPVV 78 (79)
T ss_dssp CCSCCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCCCSCCCSSEEEEEECTTSBBCSCCBB
T ss_pred CCCCCcChHHCCcCHHHHHHHHHHHCCCCceEEeCCCCccCCccCCCEEEEEECCCCeEEeCcee
Confidence 89999999999999999999999999999999999999999999999999999999999999997
No 6
>2ci2_I Chymotrypsin inhibitor 2; proteinase inhibitor (chymotrypsin); 2.00A {Hordeum vulgare} SCOP: d.40.1.1 PDB: 2sni_I
Probab=100.00 E-value=2.9e-35 Score=176.50 Aligned_cols=66 Identities=32% Similarity=0.520 Sum_probs=64.0
Q ss_pred CCCCCCCccccccchHHHHHHHHhhCCCCeEEEecCCCccccCccCCcEEEEeCCCCcEEecCcCC
Q 044806 5 CKGKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVVDVPTIG 70 (70)
Q Consensus 5 ~~~k~~WpeLVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vTmDyr~dRV~v~vD~~g~V~~vP~vG 70 (70)
|.+|++||||||+++++|+.+|++|+|++.++||++|+++||||||||||||+|++|+|+++|+||
T Consensus 18 ~~~K~sWPELVG~~~~~A~~~I~~d~p~v~vrVl~~G~~VT~Dfr~dRV~V~vD~~g~V~~vP~vG 83 (83)
T 2ci2_I 18 HNLKTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMEYRIDRVRLFVDKLDNIAEVPRVG 83 (83)
T ss_dssp -CCCCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCCCSCCCTTEEEEEECTTSBBCSCCEEC
T ss_pred CCChhhhHHHcCCcHHHHHHHHHhhCCCCeEEEecCCCccCCCcCCCEEEEEECCCCcEEeCCcCC
Confidence 679999999999999999999999999999999999999999999999999999999999999998
No 7
>1cse_I Eglin C; complex(serine proteinase-inhibitor); 1.20A {Hirudo medicinalis} SCOP: d.40.1.1 PDB: 2sec_I 2tec_I 1egl_A 1tec_I 1acb_I 3tec_I 1sib_I 1sbn_I 1mee_I 1egp_A 1egp_B
Probab=100.00 E-value=2.9e-35 Score=171.68 Aligned_cols=65 Identities=34% Similarity=0.422 Sum_probs=61.3
Q ss_pred CCCCCCccccccchHHHHHHHHhhCCCCeEEEecCCCccccCccCCcEEEEeC-CCCcEEecCcCC
Q 044806 6 KGKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRVYVWVD-TNGIVVDVPTIG 70 (70)
Q Consensus 6 ~~k~~WpeLVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vTmDyr~dRV~v~vD-~~g~V~~vP~vG 70 (70)
++|+|||||||+++++|+.+|++|+|++.+++|++|+++||||||||||||+| ++|+|+++|+||
T Consensus 5 ~~k~sWPELVG~~~~~A~~~I~~d~p~~~v~vl~~g~~vT~Df~~~RV~V~vD~~~g~V~~vP~iG 70 (70)
T 1cse_I 5 SELKSFPEVVGKTVDQAREYFTLHYPQYNVYFLPEGSPVTLDLRYNRVRVFYNPGTNVVNHVPHVG 70 (70)
T ss_dssp ---CBCGGGTTSBHHHHHHHHHHHCTTSEEEEEETTCCEECCCCTTEEEEEEETTTTEECSCCEEC
T ss_pred CCCCcCHHHcCccHHHHHHHHHHHCCCCeEEEecCCCccCCccCCCeEEEEEcCCCCEEEeCCcCC
Confidence 46899999999999999999999999999999999999999999999999999 999999999998
No 8
>1cq4_A Protein (serine proteinase inhibitor 2); serine protease inhibitor, polyglutamine insertion mutant, subtilisin- chymotrypsin inhibitor-2; 1.80A {Hordeum vulgare} SCOP: d.40.1.1
Probab=99.93 E-value=1.3e-26 Score=126.24 Aligned_cols=47 Identities=30% Similarity=0.466 Sum_probs=36.5
Q ss_pred CCCCCccccccchHHHHHHHHhhCCCCeEEEecCCCccccCccCCcE
Q 044806 7 GKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCRRV 53 (70)
Q Consensus 7 ~k~~WpeLVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vTmDyr~dRV 53 (70)
.|+|||||||+++++|+++|++|||++.++||++|++|||||||||+
T Consensus 1 ~K~sWPELVG~~~~~A~~~I~~e~p~v~v~vl~~gs~vT~Df~~~R~ 47 (47)
T 1cq4_A 1 MKTEWPELVGKSVEEAKKVILQDKPEAQIIVLPVGTIVTMGQQQQGM 47 (47)
T ss_dssp -CCBCGGGTTSBHHHHHHHHHHHCTTCEEEEEETTCCC---------
T ss_pred CCcCChhhcCccHHHHHHHHHHHCCCCEEEEeCCCCCcCcccCCCCC
Confidence 48999999999999999999999999999999999999999999996
No 9
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=99.85 E-value=1.1e-21 Score=106.08 Aligned_cols=43 Identities=60% Similarity=0.895 Sum_probs=41.6
Q ss_pred cCCCCCCCccccccchHHHHHHHHhhCCCCeEEEecCCCcccc
Q 044806 4 ECKGKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFL 46 (70)
Q Consensus 4 ~~~~k~~WpeLVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vTm 46 (70)
+|++|+|||||||+++++|+++|++|||++.+.||++|++||+
T Consensus 3 ~c~~K~sWPELVG~~~~~A~~~I~~e~P~v~v~vl~~gs~vT~ 45 (45)
T 1hym_A 3 SCPGKSSWPHLVGVGGSVAKAIIERQNPNVKAVILEEGTPVTK 45 (45)
T ss_dssp CCCSCSBCCCCTTSCHHHHHHHHHHHCTTCEEEEEECCSCCCC
T ss_pred CCCCCCcChhhcCCcHHHHHHHHHHHCCCCeEEEecCCCcCCC
Confidence 4999999999999999999999999999999999999999996
No 10
>1hym_B CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=99.37 E-value=2.9e-13 Score=65.44 Aligned_cols=24 Identities=50% Similarity=1.027 Sum_probs=23.5
Q ss_pred CccCCcEEEEeCCCCcEEecCcCC
Q 044806 47 DRYCRRVYVWVDTNGIVVDVPTIG 70 (70)
Q Consensus 47 Dyr~dRV~v~vD~~g~V~~vP~vG 70 (70)
||||+||+||+|++|+|+++|+||
T Consensus 1 Df~~~RVrvfvd~~g~V~~~P~iG 24 (26)
T 1hym_B 1 DFRCNRVRIWVNKRGLVVSPPRIG 24 (26)
T ss_dssp CCCTTEEEEEEETTTEEECCSBCC
T ss_pred CCCCCEEEEEECCCCcEEECCccc
Confidence 899999999999999999999998
No 11
>3ouv_A Serine/threonine protein kinase; protein-ligand interaction, transferase; 2.00A {Mycobacterium tuberculosis H37RA}
Probab=77.12 E-value=1.4 Score=23.73 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=17.9
Q ss_pred CCCccccccchHHHHHHHHhhC
Q 044806 9 SSWPELVGVEGKVAAETIEREN 30 (70)
Q Consensus 9 ~~WpeLVG~~~~~A~~~I~~d~ 30 (70)
..=|+|+|++..+|...++...
T Consensus 8 v~VPdv~G~~~~~A~~~L~~~G 29 (71)
T 3ouv_A 8 KDIPDVAGQTVDVAQKNMNVYG 29 (71)
T ss_dssp EECCCCTTCBHHHHHHHHHHTT
T ss_pred eECCCcCCCCHHHHHHHHHHCC
Confidence 3569999999999998877653
No 12
>2kuf_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=71.27 E-value=7 Score=23.34 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=17.3
Q ss_pred CCCccccccchHHHHHHHHhh
Q 044806 9 SSWPELVGVEGKVAAETIERE 29 (70)
Q Consensus 9 ~~WpeLVG~~~~~A~~~I~~d 29 (70)
..=|+|+|++..+|...++..
T Consensus 8 v~vPdv~G~~~~~A~~~L~~~ 28 (139)
T 2kuf_A 8 KDIPDVAGQTVDVAQKNLNVY 28 (139)
T ss_dssp EEECCCCSSBHHHHHHHHHHH
T ss_pred eeCCCcCCCCHHHHHHHHHHC
Confidence 446899999999999888754
No 13
>2kud_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=53.79 E-value=14 Score=22.09 Aligned_cols=22 Identities=18% Similarity=0.287 Sum_probs=18.2
Q ss_pred CCCccccccchHHHHHHHHhhC
Q 044806 9 SSWPELVGVEGKVAAETIEREN 30 (70)
Q Consensus 9 ~~WpeLVG~~~~~A~~~I~~d~ 30 (70)
..=|+|+|++..+|...++...
T Consensus 9 v~vPdv~G~~~~~A~~~L~~~g 30 (140)
T 2kud_A 9 VQVPDVRGQSSADAIATLQNRG 30 (140)
T ss_dssp ECCCCCTTSBHHHHHHHHHHHT
T ss_pred eECCccCCCCHHHHHHHHHHCC
Confidence 4579999999999998887653
No 14
>3ge3_E Toluene-4-monooxygenase system protein D; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.137.1.1 PDB: 3dhh_E* 3dhi_E 3ge8_E 3i5j_E 3i63_E 3q14_E 3q2a_E* 3q3m_E* 3q3n_E* 3q3o_E* 1g10_A 1g11_A 2bf2_A 3ri7_E 2bf5_A 2bf3_A* 2bf3_B*
Probab=52.76 E-value=14 Score=22.08 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=17.9
Q ss_pred HHHHHhhCCCCeEEEecCCCcccc
Q 044806 23 AETIERENPIVSAHILLEGSIVFL 46 (70)
Q Consensus 23 ~~~I~~d~p~~~v~vl~pg~~vTm 46 (70)
.++|.++||++.++|...+.++-.
T Consensus 28 VeaI~~DNP~~~v~V~d~pa~vrI 51 (103)
T 3ge3_E 28 IETAEIDNPGKEITVEDRRAYVRI 51 (103)
T ss_dssp HHHHHHHCTTSCCEEEECSSEEEE
T ss_pred HHHHHhHCcCCEEEEeecCCEEEE
Confidence 578999999999776666655533
No 15
>2kue_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=48.72 E-value=9.6 Score=22.77 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=18.6
Q ss_pred CCCccccccchHHHHHHHHhhCC
Q 044806 9 SSWPELVGVEGKVAAETIERENP 31 (70)
Q Consensus 9 ~~WpeLVG~~~~~A~~~I~~d~p 31 (70)
..=|+|+|++..+|...++...-
T Consensus 76 v~vPd~~G~~~~~A~~~L~~~Gl 98 (138)
T 2kue_A 76 KDIPDVAGQTVDVAQKNLNVYGF 98 (138)
T ss_dssp EECCCCTTSBHHHHHHHHHHHSC
T ss_pred eeCCccCCCCHHHHHHHHHHCCC
Confidence 45689999999999988877543
No 16
>2kui_A PKNB, serine/threonine-protein kinase PKNB; external domain, signaling, STPK, resuscitation, transferase; NMR {Mycobacterium tuberculosis}
Probab=47.68 E-value=49 Score=21.93 Aligned_cols=57 Identities=18% Similarity=0.196 Sum_probs=33.9
Q ss_pred CCccccccchHHHHHHHHhhCCCCeEEEe-------cCCCccccCc-------cCCcEEEEeCCCCcEEecCc
Q 044806 10 SWPELVGVEGKVAAETIERENPIVSAHIL-------LEGSIVFLDR-------YCRRVYVWVDTNGIVVDVPT 68 (70)
Q Consensus 10 ~WpeLVG~~~~~A~~~I~~d~p~~~v~vl-------~pg~~vTmDy-------r~dRV~v~vD~~g~V~~vP~ 68 (70)
.=|+|+|++..+|...++... +.+.+. +.|..+..+= ....|.|++...-.-+.+|-
T Consensus 10 ~VP~v~G~~~~~A~~~L~~~g--l~~~~~~~~s~~~~~g~Vi~q~P~~G~~v~~g~~V~l~vs~G~~~v~vPd 80 (275)
T 2kui_A 10 QVPDVRGQSSADAIATLQNRG--FKIRTLQKPDSTIPPDHVIGTDPAANTSVSAGDEITVNVSTGPEQREIPD 80 (275)
T ss_dssp ECCCCTTSCHHHHHHHHHHHT--CEEEEEEEESSSSSCSSCSCCCTTTTSEECSSCEEEEEEEESCCEEECCC
T ss_pred ECCccCCCCHHHHHHHHHHCC--CeeEEeeeeCCCCCCCEEEEecCCCCCCcCCCCEEEEEEecCCcccccCc
Confidence 568999999999998887653 333222 2344333322 13567888764433344553
No 17
>2yh9_A Small protein A, BAME protein; lipoprotein, 3D domain SWAP, membrane protein; 1.80A {Escherichia coli}
Probab=42.98 E-value=23 Score=19.76 Aligned_cols=18 Identities=6% Similarity=0.311 Sum_probs=15.2
Q ss_pred cCCcEEEEeCCCCcEEec
Q 044806 49 YCRRVYVWVDTNGIVVDV 66 (70)
Q Consensus 49 r~dRV~v~vD~~g~V~~v 66 (70)
-..++.|+.|++|+|+++
T Consensus 54 ~~~~l~V~Fd~~g~V~~~ 71 (88)
T 2yh9_A 54 TQQTLTLTFNSSGVLTNI 71 (88)
T ss_dssp SCCEEEEEECTTSBEEEE
T ss_pred EEEEEEEEEcCCCeEEEE
Confidence 356799999999999886
No 18
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Probab=40.89 E-value=20 Score=19.76 Aligned_cols=14 Identities=36% Similarity=0.292 Sum_probs=11.3
Q ss_pred EEEEeCCCCcEEec
Q 044806 53 VYVWVDTNGIVVDV 66 (70)
Q Consensus 53 V~v~vD~~g~V~~v 66 (70)
|.+.+|.+|.|..+
T Consensus 29 v~~~i~~~G~v~~~ 42 (90)
T 1u07_A 29 VKFDVTPDGRVDNV 42 (90)
T ss_dssp EEEEECTTSCEEEE
T ss_pred EEEEECCCCCEEEE
Confidence 56778999998875
No 19
>3db7_A Putative calcium-regulated periplasmic protein; structural genomics, joint center for structural genomics; HET: MSE; 1.40A {Bacteroides thetaiotaomicron} SCOP: d.98.2.1 PDB: 3due_A*
Probab=36.69 E-value=67 Score=19.11 Aligned_cols=44 Identities=11% Similarity=0.021 Sum_probs=30.8
Q ss_pred HHHHHHhhCCCCeEE-EecCCCccccCccCCcEEEEeCCCCcEEec
Q 044806 22 AAETIERENPIVSAH-ILLEGSIVFLDRYCRRVYVWVDTNGIVVDV 66 (70)
Q Consensus 22 A~~~I~~d~p~~~v~-vl~pg~~vTmDyr~dRV~v~vD~~g~V~~v 66 (70)
+...|++..|++.+. +=+....--.++. +++-|..|.+|.+..+
T Consensus 81 i~~~I~~~yp~~~I~~ie~~~~~YeV~L~-ng~el~Fd~~G~~i~i 125 (127)
T 3db7_A 81 IQKYVTTNYPDAKVLKIERDKKDYEVKLS-NRTELKFDLKFNLIDI 125 (127)
T ss_dssp HHHHHHHHCTTCCEEEEEECSSEEEEEET-TSCEEEEETTCCEEEE
T ss_pred HHHHHHHHCCCCeEEEEEEECCEEEEEEC-CCcEEEEcCCCCEEec
Confidence 467899999999886 5454433333343 5689999999988764
No 20
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=34.59 E-value=33 Score=23.03 Aligned_cols=59 Identities=17% Similarity=0.243 Sum_probs=40.5
Q ss_pred CC-CCCCCccccccchHHHHHHHHhhCCCCeEEEecCCCccccCccCC--cEEEE-eCCCCcE
Q 044806 5 CK-GKSSWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDRYCR--RVYVW-VDTNGIV 63 (70)
Q Consensus 5 ~~-~k~~WpeLVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vTmDyr~d--RV~v~-vD~~g~V 63 (70)
|. .|.-|-++=-.+-.+=...-.++.|+-...-+++||.++++.+.. +.+|. +|.+-..
T Consensus 125 c~~s~~vW~di~~~~~r~FIk~YL~~yP~rpmv~~~~GQ~i~~E~~g~w~~~~V~~vD~SLv~ 187 (213)
T 3dlm_A 125 CRPLKKTWEDIEDISCRDFIEEYVTAYPNRPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSLVR 187 (213)
T ss_dssp SSCCSSGGGGCSCHHHHHHHHHHHHHTTCCCCCCCCTTCEEEEEETTEEEEEEEEEEETTEEE
T ss_pred EEcccchhhhcCcchhHHHHHHHHHhCCCCceEEcCCCCEEEEEecCcEEEEEEEEEcceeEE
Confidence 44 467787775443233233345778988888999999999999999 66663 6665433
No 21
>2km7_A Small protein A; BAME, SMPA, BAM complex, OMP85, YAET, cell membrane, cell OU membrane, lipoprotein, membrane, palmitate, membrane protei; NMR {Escherichia coli} PDB: 2kxx_A
Probab=31.41 E-value=33 Score=19.77 Aligned_cols=17 Identities=6% Similarity=0.366 Sum_probs=14.8
Q ss_pred CCcEEEEeCCCCcEEec
Q 044806 50 CRRVYVWVDTNGIVVDV 66 (70)
Q Consensus 50 ~dRV~v~vD~~g~V~~v 66 (70)
..++.|+.|++|+|+++
T Consensus 69 ~~~l~V~Fd~~g~V~~i 85 (102)
T 2km7_A 69 QQTLTLTFNSSGVLTNI 85 (102)
T ss_dssp CCCEEEEEETTTEEEEE
T ss_pred EEEEEEEECCCCeEEEE
Confidence 56799999999999886
No 22
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=31.18 E-value=24 Score=20.11 Aligned_cols=27 Identities=15% Similarity=-0.049 Sum_probs=15.1
Q ss_pred cCCCccccCccCCcEEEEeCCCC-cEEe
Q 044806 39 LEGSIVFLDRYCRRVYVWVDTNG-IVVD 65 (70)
Q Consensus 39 ~pg~~vTmDyr~dRV~v~vD~~g-~V~~ 65 (70)
++|+.++.++....+-|+-+.+| .+..
T Consensus 17 ~~g~~~~~~~~g~~i~v~r~~~g~~~~A 44 (113)
T 2jo6_A 17 LPETGVCALLGDEQVAIFRPYHSDQVFA 44 (113)
T ss_dssp CTTEEEEEEETTEEEEEEECSSSSCCEE
T ss_pred CCCCeEEEEECCEEEEEEEECCCCEEEE
Confidence 45555555555556666666555 4443
No 23
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=30.98 E-value=40 Score=19.04 Aligned_cols=28 Identities=11% Similarity=0.001 Sum_probs=16.4
Q ss_pred cCCCccccCc-cCCcEEEEeCCCCcEEec
Q 044806 39 LEGSIVFLDR-YCRRVYVWVDTNGIVVDV 66 (70)
Q Consensus 39 ~pg~~vTmDy-r~dRV~v~vD~~g~V~~v 66 (70)
++|..++..+ ....+-|+-+.+|.+..+
T Consensus 12 ~~g~~~~~~~~~g~~v~v~r~~~g~~~A~ 40 (111)
T 1vm9_A 12 WVGEMETFETSDGTEVLIVNSEEHGVKAY 40 (111)
T ss_dssp CTTCEEEEECTTCCEEEEEEETTTEEEEE
T ss_pred CCCCeEEEEEcCCCEEEEEEeCCCeEEEE
Confidence 4555555555 556677766666665543
No 24
>2oqc_A Penicillin V acylase; NTN-hydrolase, conjugated bIle acid HY choloylglycine hydrolase, hydrolase; 2.50A {Bacillus subtilis}
Probab=30.70 E-value=40 Score=23.07 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=33.8
Q ss_pred cchHHHHHHHHhhC------------CCCeEEEe-cCCCccccCccCCcEEEEeCCCCcEEecCc
Q 044806 17 VEGKVAAETIEREN------------PIVSAHIL-LEGSIVFLDRYCRRVYVWVDTNGIVVDVPT 68 (70)
Q Consensus 17 ~~~~~A~~~I~~d~------------p~~~v~vl-~pg~~vTmDyr~dRV~v~vD~~g~V~~vP~ 68 (70)
++.+||++.+++-. +.++..+- +-|..+..+|.++.+.|+-++-|..+.-|.
T Consensus 112 ~tV~Ea~~~L~~~~i~~~~~~~~~~~~~~H~~i~D~sG~s~viE~~~g~l~i~~n~~~V~TN~P~ 176 (327)
T 2oqc_A 112 QSLEDVKEKIRSLTIVEKKLDLLDTVLPLHWILSDRTGRNLTIEPRADGLKVYDNQPGVMTNSPD 176 (327)
T ss_dssp CSHHHHHHHGGGEEEBCCCBGGGTBCCCEEEEEECTTSCEEEEEEETTEEEEEECSSCEECSSSC
T ss_pred CCHHHHHHHHHcCceecccccCcCCccceEEEEEcCCCCEEEEEEecCCcEEEeCCceEEcCCCC
Confidence 45566776665532 22232233 347788899999999998877777776654
No 25
>4a7k_A Aldos-2-ulose dehydratase; lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme; 2.00A {Phanerochaete chrysosporium} PDB: 4a7y_A* 4a7z_A*
Probab=30.26 E-value=41 Score=27.13 Aligned_cols=37 Identities=24% Similarity=0.216 Sum_probs=30.4
Q ss_pred CCeEEEecCCCccccCccCCcEEEE------eCCCCcEEecCc
Q 044806 32 IVSAHILLEGSIVFLDRYCRRVYVW------VDTNGIVVDVPT 68 (70)
Q Consensus 32 ~~~v~vl~pg~~vTmDyr~dRV~v~------vD~~g~V~~vP~ 68 (70)
..+++|+||+..+-.+-|.+-|-|. .|++|+|.++|-
T Consensus 469 ~~~~~v~p~~~~~~~~~~~~g~kv~~g~~~~~~~~~~~~~~p~ 511 (900)
T 4a7k_A 469 KLTLVVLPPFARLDVERNVSGVKVMAGTVCWADENGKHERVPA 511 (900)
T ss_dssp EEEEEEECTTCEEECCTTTCEEEEEEEEEEEEETTEEEEECSC
T ss_pred eEEEEEcCCccccccccccCceEEEEEEeeeccCCCcEEeeEC
Confidence 3467799999999988888888875 457899999985
No 26
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Probab=30.12 E-value=27 Score=19.73 Aligned_cols=15 Identities=33% Similarity=0.510 Sum_probs=11.4
Q ss_pred cEEEEeCCCCcEEec
Q 044806 52 RVYVWVDTNGIVVDV 66 (70)
Q Consensus 52 RV~v~vD~~g~V~~v 66 (70)
.|.+.+|.+|.|..+
T Consensus 43 ~v~f~I~~~G~v~~~ 57 (106)
T 2k9k_A 43 TLSFTIDTTGKAVDI 57 (106)
T ss_dssp EEEEEEETTTEEEEE
T ss_pred EEEEEECCCCcEEEE
Confidence 356678999998765
No 27
>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A
Probab=30.00 E-value=41 Score=23.53 Aligned_cols=23 Identities=13% Similarity=0.148 Sum_probs=17.5
Q ss_pred hHHHHHHHHhhCCCCeEEEecCCCccc
Q 044806 19 GKVAAETIERENPIVSAHILLEGSIVF 45 (70)
Q Consensus 19 ~~~A~~~I~~d~p~~~v~vl~pg~~vT 45 (70)
..+|.++|++. ..+++.|||.+|
T Consensus 174 ~p~vl~AI~~A----D~IvlgPGS~~T 196 (311)
T 3c3d_A 174 SPKVLEAFEKE----ENILIGPSNPIT 196 (311)
T ss_dssp CHHHHHHHHHC----CEEEECSSCTTT
T ss_pred CHHHHHHHHhC----CEEEECCCCCHH
Confidence 44667777763 579999999887
No 28
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=29.17 E-value=52 Score=18.43 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=15.8
Q ss_pred ecCCCccccCccCCc-EEEEeCCCCcEEe
Q 044806 38 LLEGSIVFLDRYCRR-VYVWVDTNGIVVD 65 (70)
Q Consensus 38 l~pg~~vTmDyr~dR-V~v~vD~~g~V~~ 65 (70)
|++|+.++.++.... +-|+-+ +|.+..
T Consensus 13 l~~g~~~~~~~~g~~~v~v~r~-~g~~~A 40 (108)
T 2i7f_A 13 VKDGEPVAVYQEKMPALAVYNV-DGEVFV 40 (108)
T ss_dssp CBTTBCEEECCTTSSCEEEEEE-TTEEEE
T ss_pred cCCCCeEEEEECCeeEEEEEEE-CCEEEE
Confidence 355666666665556 666655 555544
No 29
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta}
Probab=29.03 E-value=38 Score=21.46 Aligned_cols=21 Identities=29% Similarity=0.121 Sum_probs=14.7
Q ss_pred cccCccCCcEEEEeCC-CCcEE
Q 044806 44 VFLDRYCRRVYVWVDT-NGIVV 64 (70)
Q Consensus 44 vTmDyr~dRV~v~vD~-~g~V~ 64 (70)
.++.-.+.||-||+|- .|.|.
T Consensus 122 l~~~~~p~rVGVfLDye~G~lS 143 (186)
T 3uv9_A 122 LSVIICPDRVGVFVDYEACTVS 143 (186)
T ss_dssp CCCSSCCSEEEEEEETTTTEEE
T ss_pred ccccccCCEEEEEeecCCCEEE
Confidence 3445568899999994 46665
No 30
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=28.06 E-value=33 Score=19.86 Aligned_cols=27 Identities=11% Similarity=-0.165 Sum_probs=15.7
Q ss_pred cCCCccccCccCCcEEEEeCCCCcEEe
Q 044806 39 LEGSIVFLDRYCRRVYVWVDTNGIVVD 65 (70)
Q Consensus 39 ~pg~~vTmDyr~dRV~v~vD~~g~V~~ 65 (70)
++|+.++.++....|-|+-+.+|.+..
T Consensus 16 ~~g~~~~~~~~g~~v~v~r~~~G~~~A 42 (119)
T 3c0d_A 16 MPFIGATVLIEGERVALFYIPDSGVYA 42 (119)
T ss_dssp CBTCCEEEEETTEEEEEEEETTTEEEE
T ss_pred CCCCeEEEEECCeEEEEEEecCCeEEE
Confidence 445555555555566666666666544
No 31
>3pjy_A Hypothetical signal peptide protein; DUF192 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.55A {Sinorhizobium meliloti}
Probab=27.87 E-value=31 Score=21.18 Aligned_cols=13 Identities=8% Similarity=0.562 Sum_probs=11.5
Q ss_pred EEEeCCCCcEEec
Q 044806 54 YVWVDTNGIVVDV 66 (70)
Q Consensus 54 ~v~vD~~g~V~~v 66 (70)
-+|+|++|+|+.+
T Consensus 72 iiFld~~g~Vv~i 84 (136)
T 3pjy_A 72 MLFIASDGTIRTI 84 (136)
T ss_dssp EEEECTTSBEEEE
T ss_pred EEEECCCCEEEEE
Confidence 6799999999886
No 32
>3m7a_A Uncharacterized protein; structural genomics, unknown function, joint center for structural genomics, JCSG; HET: MSE; 1.22A {Novosphingobium aromaticivorans}
Probab=27.70 E-value=31 Score=21.37 Aligned_cols=13 Identities=15% Similarity=0.445 Sum_probs=11.2
Q ss_pred EEEeCCCCcEEec
Q 044806 54 YVWVDTNGIVVDV 66 (70)
Q Consensus 54 ~v~vD~~g~V~~v 66 (70)
-+|+|.+|+|+.+
T Consensus 86 iiFid~dg~Vv~i 98 (140)
T 3m7a_A 86 IIFVGLDRRVMNI 98 (140)
T ss_dssp EEEECTTSBEEEE
T ss_pred EEEECCCCeEEEE
Confidence 6789999999876
No 33
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=27.40 E-value=47 Score=23.47 Aligned_cols=25 Identities=16% Similarity=0.120 Sum_probs=18.4
Q ss_pred cchHHHHHHHHhhCCCCeEEEecCCCccc
Q 044806 17 VEGKVAAETIERENPIVSAHILLEGSIVF 45 (70)
Q Consensus 17 ~~~~~A~~~I~~d~p~~~v~vl~pg~~vT 45 (70)
++..+|.++|++ +..+++.|||..|
T Consensus 177 ~a~p~al~AI~~----AD~IvlgPGSlyT 201 (341)
T 2p0y_A 177 QAVQPVIDAIMA----ADQIVLGPGSLFT 201 (341)
T ss_dssp CCCHHHHHHHHH----CSEEEECSSCCCC
T ss_pred CCCHHHHHHHHh----CCEEEECCCCCHH
Confidence 345566777776 3578999999887
No 34
>1lr0_A TOLA protein; domain-swapping, TONB, protein transport; 1.91A {Pseudomonas aeruginosa} SCOP: d.212.1.1
Probab=27.40 E-value=41 Score=20.21 Aligned_cols=17 Identities=12% Similarity=0.243 Sum_probs=14.1
Q ss_pred CcEEEEeCCCCcEEecC
Q 044806 51 RRVYVWVDTNGIVVDVP 67 (70)
Q Consensus 51 dRV~v~vD~~g~V~~vP 67 (70)
-.|+|.+|.+|.|..+-
T Consensus 54 ~~V~v~l~~dG~v~~v~ 70 (129)
T 1lr0_A 54 VEVLIEMLPDGTITNAS 70 (129)
T ss_dssp EEEEEEECTTSBEEEEE
T ss_pred EEEEEEECCCCCEEEEE
Confidence 46888999999998863
No 35
>3elg_A Uncharacterized periplasmic protein; BLIP-like fold, structural genomics, joint center for struct genomics, JCSG; HET: CIT; 1.64A {Bacteroides vulgatus atcc 8482} SCOP: d.98.2.1
Probab=25.66 E-value=1.1e+02 Score=18.09 Aligned_cols=43 Identities=12% Similarity=-0.094 Sum_probs=29.6
Q ss_pred HHHHHhhCCCCeEE-EecCCCccccCccCCcEEEEeCCCCcEEec
Q 044806 23 AETIERENPIVSAH-ILLEGSIVFLDRYCRRVYVWVDTNGIVVDV 66 (70)
Q Consensus 23 ~~~I~~d~p~~~v~-vl~pg~~vTmDyr~dRV~v~vD~~g~V~~v 66 (70)
...|++..|++.+. +=+....--.+.. +.+-|.+|.+|.+..+
T Consensus 83 ~~~i~~~yp~~~I~~iek~~~~YeVeL~-~~~el~fd~~G~~i~~ 126 (128)
T 3elg_A 83 SKYMKANYNGHKTVKIERNRKGYELTLE-NGLEVDFDQFGGFLKL 126 (128)
T ss_dssp HHHHHHHSTTCCEEEEEEETTEEEEEET-TSCEEEECTTSCEEEE
T ss_pred HHHHHHHCCCCEEEEEEEeCCEEEEEEC-CCeEEEEeCCCCEEec
Confidence 56888999999886 4444333333333 4589999999988754
No 36
>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}
Probab=25.31 E-value=48 Score=22.27 Aligned_cols=39 Identities=15% Similarity=0.072 Sum_probs=30.3
Q ss_pred CCccccccchHHHHHHHHhhCCCCeEEEecCCCccccCc
Q 044806 10 SWPELVGVEGKVAAETIERENPIVSAHILLEGSIVFLDR 48 (70)
Q Consensus 10 ~WpeLVG~~~~~A~~~I~~d~p~~~v~vl~pg~~vTmDy 48 (70)
.=|+-+|.+--.+.....+..|+-...|+--|++.|.|+
T Consensus 102 ~~P~~lG~DR~~~~vaA~~~~~~~~~iVVD~GTA~T~d~ 140 (266)
T 3djc_A 102 RNPVEVGADRIANAIAATHSFPNQNIIVIDFGTATTFCA 140 (266)
T ss_dssp SSGGGSCHHHHHHHHHHHHHSTTSEEEEEEESSEEEEEE
T ss_pred CChhhhHHHHHHHHHHHHHhcCCCCEEEEECCCeeEEEE
Confidence 346788988777766666667766678999999999996
No 37
>2bjf_A Choloylglycine hydrolase; amidohydrolase, NTN-hydrolase, bIle acids, BSH; HET: DXC; 1.67A {Clostridium perfringens} PDB: 2bjg_A 2rlc_A* 2rf8_A 2rg2_A
Probab=24.94 E-value=68 Score=21.90 Aligned_cols=30 Identities=17% Similarity=0.472 Sum_probs=23.4
Q ss_pred cCCCccccCccCCcEEEEeCCCCcEEecCc
Q 044806 39 LEGSIVFLDRYCRRVYVWVDTNGIVVDVPT 68 (70)
Q Consensus 39 ~pg~~vTmDyr~dRV~v~vD~~g~V~~vP~ 68 (70)
+-|..+..+|.++++.|+-++-|..+.-|.
T Consensus 149 ~sG~s~viE~~~g~l~i~~n~~~V~TN~P~ 178 (329)
T 2bjf_A 149 ITGKSIVVEQTKEKLNVFDNNIGVLTNSPT 178 (329)
T ss_dssp TTSCEEEEEECSSCEEEEECSSCEECSSSC
T ss_pred CCCCEEEEEEecCCcEEEeCCceEEcCCCC
Confidence 346788889999999998877777776664
No 38
>3py9_A Protein kinase; pasta, muropeptide binding, phosphorylation, membran transferase; 2.20A {Staphylococcus aureus subsp} PDB: 3m9g_A
Probab=24.76 E-value=40 Score=22.78 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=17.3
Q ss_pred CCCCCCccccccchHHHHHHHHhh
Q 044806 6 KGKSSWPELVGVEGKVAAETIERE 29 (70)
Q Consensus 6 ~~k~~WpeLVG~~~~~A~~~I~~d 29 (70)
+....=|+|+|++..+|...++..
T Consensus 4 ~~~v~VPdv~G~t~~eA~~~L~~~ 27 (294)
T 3py9_A 4 NKYEETPDVIGKSVKEAEQIFNKN 27 (294)
T ss_dssp ----CCCCCTTCCHHHHHHHHHHT
T ss_pred CCeeECCCcCCCCHHHHHHHHHHC
Confidence 344567999999999999887664
No 39
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=24.37 E-value=50 Score=23.10 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=18.6
Q ss_pred cchHHHHHHHHhhCCCCeEEEecCCCccc
Q 044806 17 VEGKVAAETIERENPIVSAHILLEGSIVF 45 (70)
Q Consensus 17 ~~~~~A~~~I~~d~p~~~v~vl~pg~~vT 45 (70)
++..+|.++|++ +..+++.|||..|
T Consensus 173 ~a~p~al~AI~~----AD~IvlgPGSl~T 197 (326)
T 2q7x_A 173 LASRRVVQTILE----SDMIVLGPGSLFT 197 (326)
T ss_dssp CBCSHHHHHHHH----CSEEEECSSCCCC
T ss_pred CCCHHHHHHHHh----CCEEEECCCCCHH
Confidence 445567777876 3578999999887
No 40
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=23.60 E-value=61 Score=22.75 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=17.2
Q ss_pred hHHHHHHHHhhCCCCeEEEecCCCccc
Q 044806 19 GKVAAETIERENPIVSAHILLEGSIVF 45 (70)
Q Consensus 19 ~~~A~~~I~~d~p~~~v~vl~pg~~vT 45 (70)
..+|.++|++ +..+++.|||.+|
T Consensus 169 ~p~~l~AI~~----AD~IvlgPGS~~T 191 (323)
T 2o2z_A 169 LREGLEAIRK----ADVIVIGPGSLYT 191 (323)
T ss_dssp CHHHHHHHHH----CSEEEECSSCTTT
T ss_pred CHHHHHHHHh----CCEEEECCCCCHH
Confidence 4466677766 3578999999887
No 41
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=23.06 E-value=64 Score=22.81 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=17.2
Q ss_pred hHHHHHHHHhhCCCCeEEEecCCCccc
Q 044806 19 GKVAAETIERENPIVSAHILLEGSIVF 45 (70)
Q Consensus 19 ~~~A~~~I~~d~p~~~v~vl~pg~~vT 45 (70)
..+|.++|++. ..+++.|||..|
T Consensus 168 ~p~~l~AI~~A----D~IvlgPGS~~T 190 (332)
T 2ppv_A 168 MNEAIEALEQA----DLIVLGPGSLYT 190 (332)
T ss_dssp CHHHHHHHHHC----SEEEECSSCCCC
T ss_pred CHHHHHHHHhC----CEEEECCCCCHH
Confidence 44666777663 578999999887
No 42
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=22.60 E-value=64 Score=19.02 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=15.6
Q ss_pred ecCCCccccCccCCcEEEEeC
Q 044806 38 LLEGSIVFLDRYCRRVYVWVD 58 (70)
Q Consensus 38 l~pg~~vTmDyr~dRV~v~vD 58 (70)
|++|+..+.+++...|.|+-.
T Consensus 14 l~~G~~~~v~~~g~pv~v~r~ 34 (129)
T 1rie_A 14 IPEGKNMAFKWRGKPLFVRHR 34 (129)
T ss_dssp SCTTCEEEEEETTEEEEEEEC
T ss_pred CCCCCEEEEEECCeEEEEEEC
Confidence 578888888888777777643
No 43
>2inp_L Phenol hydroxylase component PHM; DIIRON, four-helix bundle, regulatory protein, oxidoreductase; 2.30A {Pseudomonas stutzeri} PDB: 2inn_L 1hqi_A
Probab=22.09 E-value=64 Score=18.58 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=10.8
Q ss_pred HHHHHHhhCCCCeE
Q 044806 22 AAETIERENPIVSA 35 (70)
Q Consensus 22 A~~~I~~d~p~~~v 35 (70)
..+.|..+||++.+
T Consensus 18 vVeai~~dNP~~~V 31 (89)
T 2inp_L 18 LAEAVMEDNPDAEM 31 (89)
T ss_dssp HHHHHHSSCTTCEE
T ss_pred HHHHHHhHCcCcEE
Confidence 45789999999643
No 44
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=21.38 E-value=65 Score=17.92 Aligned_cols=27 Identities=19% Similarity=0.117 Sum_probs=15.5
Q ss_pred ecCCCccccCccCCcEEEEeCCCCcEEe
Q 044806 38 LLEGSIVFLDRYCRRVYVWVDTNGIVVD 65 (70)
Q Consensus 38 l~pg~~vTmDyr~dRV~v~vD~~g~V~~ 65 (70)
|++|+..+.++....|-|+- .+|.+..
T Consensus 11 l~~g~~~~~~~~g~~i~v~r-~~g~~~A 37 (106)
T 3dqy_A 11 LPPGEMQRYEGGPEPVMVCN-VDGEFFA 37 (106)
T ss_dssp SCTTCEEEECCSSSCEEEEE-ETTEEEE
T ss_pred CCCCCEEEEEECCEEEEEEE-ECCEEEE
Confidence 35566666666666666653 4555544
No 45
>3al9_A Plexin-A2; beta-propeller, membrane protein, signaling protein; HET: NAG; 2.10A {Mus musculus} PDB: 3al8_B*
Probab=21.24 E-value=51 Score=24.39 Aligned_cols=31 Identities=23% Similarity=0.327 Sum_probs=25.9
Q ss_pred cCCCcc--ccCccCCcEEEEeCCCCcEEecCcC
Q 044806 39 LEGSIV--FLDRYCRRVYVWVDTNGIVVDVPTI 69 (70)
Q Consensus 39 ~pg~~v--TmDyr~dRV~v~vD~~g~V~~vP~v 69 (70)
+.|+++ .|-|..++-.||+-.+..|+++|.-
T Consensus 447 ~~~~pv~~~l~~~~~~~~Lyv~s~~~V~kvpl~ 479 (539)
T 3al9_A 447 KDGSPILRDMAFSINQLYLYVMSERQVTRVPVE 479 (539)
T ss_dssp TTCCCCCSCCEECTTSSEEEEECSSEEEEEESC
T ss_pred cCCCccccceEEccCCCeEEEEeccccceeehh
Confidence 448887 6878889999999999999999963
No 46
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B*
Probab=20.91 E-value=53 Score=20.91 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=13.3
Q ss_pred CccCCcEEEEeCC-CCcEE
Q 044806 47 DRYCRRVYVWVDT-NGIVV 64 (70)
Q Consensus 47 Dyr~dRV~v~vD~-~g~V~ 64 (70)
.-.+.||.||+|- .|.|.
T Consensus 122 ~~~~~rVGVfLDye~G~lS 140 (188)
T 2vok_A 122 QVPPCQIGIFVDYEAGVVS 140 (188)
T ss_dssp SSCCSEEEEEEETTTTEEE
T ss_pred CCCCCEEEEEEEcCCCEEE
Confidence 3458999999994 47665
No 47
>1yr1_A Divib, FTSQ, cell-division initiation protein; divisome, cell cycle; NMR {Geobacillus stearothermophilus} PDB: 2alj_A
Probab=20.85 E-value=72 Score=18.67 Aligned_cols=54 Identities=24% Similarity=0.177 Sum_probs=29.2
Q ss_pred CccccccchHHHHHHHHh---hCCCCeEEEecCCCccccCccCCcEEEEeCCCCcEE
Q 044806 11 WPELVGVEGKVAAETIER---ENPIVSAHILLEGSIVFLDRYCRRVYVWVDTNGIVV 64 (70)
Q Consensus 11 WpeLVG~~~~~A~~~I~~---d~p~~~v~vl~pg~~vTmDyr~dRV~v~vD~~g~V~ 64 (70)
-|-|+|.+..+......+ ..|..-..-+..=+.-+...+++|+.|+.++...|.
T Consensus 38 ~Pi~~gf~~~~~l~~~~k~l~~lp~~i~~~IseI~~~p~~~~~~~i~L~M~DGn~V~ 94 (119)
T 1yr1_A 38 APVLVGWKDGDAIAEMTGQLAELPAAVLGAMSEIHYKPTREYEDRVIVYMNDGYEVS 94 (119)
T ss_dssp SCCEESCCCHHHHHHHHHHHHHSCHHHHHSCSEEEECCCSSCTTEEEEECTTSCEEE
T ss_pred CceecCCCChHHHHHHHHHHHhCCHHHHhcccEEEcCCCCCCCCeEEEEEcCCcEEE
Confidence 588999887664433322 222210001111112334567999999998776554
No 48
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=20.20 E-value=77 Score=20.28 Aligned_cols=18 Identities=22% Similarity=0.106 Sum_probs=14.8
Q ss_pred ccCCcEEEEeCCCCcEEe
Q 044806 48 RYCRRVYVWVDTNGIVVD 65 (70)
Q Consensus 48 yr~dRV~v~vD~~g~V~~ 65 (70)
++++-+.|..|++|.|..
T Consensus 137 ~~p~~g~vv~d~~g~v~~ 154 (252)
T 3oam_A 137 FNPNAVKVITDKSGYALY 154 (252)
T ss_dssp TCTTSCEEEECTTSBEEE
T ss_pred hCCCceEEEECCCCeEEE
Confidence 356668899999999988
Done!