Query 044807
Match_columns 105
No_of_seqs 167 out of 1335
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 11:58:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044807.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044807hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l0b_A E3 ubiquitin-protein li 99.9 4.8E-22 1.6E-26 115.9 7.8 84 12-97 6-89 (91)
2 1x4j_A Ring finger protein 38; 99.8 5.3E-21 1.8E-25 107.6 1.4 67 29-98 7-73 (75)
3 1iym_A EL5; ring-H2 finger, ub 99.8 1.3E-19 4.5E-24 96.1 4.8 52 45-96 3-54 (55)
4 2kiz_A E3 ubiquitin-protein li 99.8 3.8E-19 1.3E-23 98.4 5.3 54 44-98 11-64 (69)
5 2ep4_A Ring finger protein 24; 99.8 3.8E-19 1.3E-23 99.6 5.2 56 44-100 12-67 (74)
6 2ect_A Ring finger protein 126 99.8 6.5E-19 2.2E-23 99.6 5.8 55 44-99 12-66 (78)
7 2ecl_A Ring-box protein 2; RNF 99.7 1.7E-18 5.9E-23 98.8 4.5 53 45-97 13-76 (81)
8 3ng2_A RNF4, snurf, ring finge 99.7 4.7E-18 1.6E-22 94.3 4.1 55 44-99 7-65 (71)
9 2ecn_A Ring finger protein 141 99.7 4.8E-18 1.6E-22 94.1 3.8 56 45-105 13-68 (70)
10 2ecm_A Ring finger and CHY zin 99.7 1E-17 3.4E-22 88.7 4.1 51 45-96 3-54 (55)
11 1v87_A Deltex protein 2; ring- 99.7 2.3E-17 7.9E-22 99.3 5.7 53 46-99 24-96 (114)
12 2ea6_A Ring finger protein 4; 99.7 1.5E-17 5.2E-22 91.6 3.9 53 44-97 12-68 (69)
13 2xeu_A Ring finger protein 4; 99.7 1.3E-17 4.3E-22 90.7 3.1 53 46-99 2-58 (64)
14 3dpl_R Ring-box protein 1; ubi 99.7 5.6E-17 1.9E-21 96.8 5.0 51 45-96 35-100 (106)
15 1chc_A Equine herpes virus-1 r 99.7 5.2E-17 1.8E-21 89.4 3.8 51 45-98 3-53 (68)
16 2d8t_A Dactylidin, ring finger 99.7 7.5E-17 2.6E-21 89.6 4.4 50 44-97 12-61 (71)
17 2djb_A Polycomb group ring fin 99.6 1.8E-16 6E-21 88.3 5.1 53 44-99 12-64 (72)
18 2ct2_A Tripartite motif protei 99.6 4.5E-16 1.5E-20 89.4 5.6 53 44-97 12-68 (88)
19 2yur_A Retinoblastoma-binding 99.6 5.7E-16 1.9E-20 86.7 5.1 54 44-100 12-67 (74)
20 4ayc_A E3 ubiquitin-protein li 99.6 2E-16 7E-21 98.2 3.5 48 47-98 53-100 (138)
21 2d8s_A Cellular modulator of i 99.6 5.2E-16 1.8E-20 88.3 4.2 53 44-98 12-71 (80)
22 2csy_A Zinc finger protein 183 99.6 6E-16 2.1E-20 87.9 4.4 48 45-96 13-60 (81)
23 2ysl_A Tripartite motif-contai 99.6 1.8E-15 6.2E-20 84.1 5.9 50 45-98 18-70 (73)
24 4a0k_B E3 ubiquitin-protein li 99.6 1.4E-16 4.9E-21 96.4 0.5 52 45-97 46-112 (117)
25 2ecy_A TNF receptor-associated 99.6 2E-15 6.8E-20 82.7 4.9 50 45-98 13-63 (66)
26 4ap4_A E3 ubiquitin ligase RNF 99.6 1.4E-15 4.9E-20 93.0 4.2 53 45-98 5-61 (133)
27 1t1h_A Gspef-atpub14, armadill 99.6 4.8E-15 1.6E-19 83.5 5.3 49 45-97 6-55 (78)
28 3lrq_A E3 ubiquitin-protein li 99.5 1.2E-15 4.1E-20 90.0 2.3 48 46-97 21-70 (100)
29 1g25_A CDK-activating kinase a 99.5 7.9E-15 2.7E-19 80.0 4.8 51 46-97 2-55 (65)
30 3fl2_A E3 ubiquitin-protein li 99.5 4.6E-15 1.6E-19 90.5 4.2 48 46-97 51-99 (124)
31 2egp_A Tripartite motif-contai 99.5 2.3E-15 7.9E-20 84.8 2.6 49 45-97 10-65 (79)
32 2y43_A E3 ubiquitin-protein li 99.5 4E-15 1.4E-19 87.5 3.5 48 46-97 21-69 (99)
33 2ysj_A Tripartite motif-contai 99.5 1.1E-14 3.7E-19 78.9 4.9 44 44-91 17-63 (63)
34 2ckl_A Polycomb group ring fin 99.5 7E-15 2.4E-19 87.7 4.4 49 46-98 14-63 (108)
35 2ckl_B Ubiquitin ligase protei 99.5 3.6E-15 1.2E-19 95.0 3.2 77 18-97 20-102 (165)
36 3ztg_A E3 ubiquitin-protein li 99.5 9.8E-15 3.4E-19 84.6 4.7 50 44-96 10-61 (92)
37 2ecw_A Tripartite motif-contai 99.5 9.7E-15 3.3E-19 83.1 4.6 49 45-97 17-71 (85)
38 2ct0_A Non-SMC element 1 homol 99.5 2.1E-14 7.2E-19 80.3 5.7 54 44-100 12-67 (74)
39 2ecv_A Tripartite motif-contai 99.5 1.3E-14 4.5E-19 82.5 4.6 49 45-97 17-71 (85)
40 2ecj_A Tripartite motif-contai 99.5 1.9E-14 6.4E-19 76.6 4.3 43 45-91 13-58 (58)
41 4ap4_A E3 ubiquitin ligase RNF 99.5 8.3E-15 2.8E-19 89.6 2.8 55 44-99 69-127 (133)
42 1e4u_A Transcriptional repress 99.5 7.6E-14 2.6E-18 78.9 6.0 59 45-104 9-69 (78)
43 1z6u_A NP95-like ring finger p 99.5 3.2E-14 1.1E-18 89.5 4.1 49 46-98 77-126 (150)
44 2vje_A E3 ubiquitin-protein li 99.5 2E-14 6.7E-19 78.4 2.4 51 45-99 6-59 (64)
45 1rmd_A RAG1; V(D)J recombinati 99.5 1.2E-14 3.9E-19 87.7 1.6 50 46-99 22-72 (116)
46 3l11_A E3 ubiquitin-protein li 99.4 1E-14 3.5E-19 87.8 0.7 49 45-97 13-62 (115)
47 1jm7_A BRCA1, breast cancer ty 99.4 5.5E-14 1.9E-18 84.0 3.7 47 47-97 21-70 (112)
48 2y1n_A E3 ubiquitin-protein li 99.4 2E-13 6.9E-18 96.9 7.0 55 47-105 332-387 (389)
49 3hct_A TNF receptor-associated 99.4 3.8E-14 1.3E-18 85.8 2.7 49 45-97 16-65 (118)
50 2kr4_A Ubiquitin conjugation f 99.4 2.2E-13 7.5E-18 78.1 4.4 49 45-97 12-60 (85)
51 2kre_A Ubiquitin conjugation f 99.4 2.9E-13 1E-17 79.9 4.5 49 45-97 27-75 (100)
52 4ic3_A E3 ubiquitin-protein li 99.4 8.9E-14 3E-18 77.8 1.6 49 46-102 23-72 (74)
53 1wgm_A Ubiquitin conjugation f 99.4 7.4E-13 2.5E-17 77.8 5.5 49 45-97 20-69 (98)
54 2vje_B MDM4 protein; proto-onc 99.4 1.1E-13 3.9E-18 75.2 1.8 50 45-98 5-57 (63)
55 3knv_A TNF receptor-associated 99.4 1.4E-13 4.9E-18 85.8 1.8 48 45-96 29-77 (141)
56 1bor_A Transcription factor PM 99.3 3.2E-13 1.1E-17 71.7 2.0 47 45-98 4-50 (56)
57 1jm7_B BARD1, BRCA1-associated 99.3 2.5E-13 8.4E-18 82.1 1.7 45 46-96 21-66 (117)
58 3k1l_B Fancl; UBC, ring, RWD, 99.3 2.8E-13 9.5E-18 94.6 0.9 60 44-103 305-379 (381)
59 2ecg_A Baculoviral IAP repeat- 99.3 3.3E-12 1.1E-16 71.5 4.7 48 47-102 25-73 (75)
60 3hcs_A TNF receptor-associated 99.3 2.1E-12 7.1E-17 82.4 2.7 50 44-97 15-65 (170)
61 2ea5_A Cell growth regulator w 99.2 9.1E-12 3.1E-16 68.6 4.3 51 44-102 12-63 (68)
62 2c2l_A CHIP, carboxy terminus 99.2 9.4E-12 3.2E-16 84.2 4.5 50 44-97 205-255 (281)
63 2yho_A E3 ubiquitin-protein li 99.2 2.7E-12 9.3E-17 72.6 1.4 46 47-100 18-64 (79)
64 2yu4_A E3 SUMO-protein ligase 99.2 6.4E-12 2.2E-16 73.2 2.9 47 45-94 5-59 (94)
65 1wim_A KIAA0161 protein; ring 99.2 1.2E-11 4.1E-16 71.9 3.0 49 45-94 3-61 (94)
66 2f42_A STIP1 homology and U-bo 99.1 6.3E-11 2.2E-15 76.4 4.6 50 44-97 103-153 (179)
67 1vyx_A ORF K3, K3RING; zinc-bi 99.1 8.5E-11 2.9E-15 63.1 3.5 48 45-96 4-58 (60)
68 3t6p_A Baculoviral IAP repeat- 99.0 6E-11 2E-15 83.4 1.7 46 46-99 294-340 (345)
69 3htk_C E3 SUMO-protein ligase 99.0 1.4E-10 4.8E-15 78.4 2.5 50 45-97 179-232 (267)
70 2bay_A PRE-mRNA splicing facto 98.9 7.2E-10 2.5E-14 59.6 2.3 48 47-98 3-51 (61)
71 3vk6_A E3 ubiquitin-protein li 98.7 8.8E-09 3E-13 60.0 3.3 48 49-99 3-51 (101)
72 3nw0_A Non-structural maintena 98.6 1E-07 3.5E-12 63.9 5.6 55 45-102 178-234 (238)
73 2jun_A Midline-1; B-BOX, TRIM, 97.3 0.00012 4.2E-09 42.3 2.6 36 46-82 2-38 (101)
74 2lri_C Autoimmune regulator; Z 96.7 0.0023 7.8E-08 34.4 4.0 49 45-97 10-62 (66)
75 2ko5_A Ring finger protein Z; 96.7 0.0015 5.1E-08 37.5 3.2 48 44-97 25-73 (99)
76 1f62_A Transcription factor WS 94.7 0.018 6.3E-07 28.9 2.1 44 49-93 2-49 (51)
77 2l5u_A Chromodomain-helicase-D 94.5 0.025 8.5E-07 29.7 2.4 47 44-94 8-58 (61)
78 1we9_A PHD finger family prote 94.5 0.01 3.4E-07 31.4 0.8 50 45-94 4-58 (64)
79 2ysm_A Myeloid/lymphoid or mix 93.7 0.026 8.7E-07 33.1 1.5 38 45-83 5-42 (111)
80 1mm2_A MI2-beta; PHD, zinc fin 93.7 0.021 7.1E-07 30.0 1.0 47 45-95 7-57 (61)
81 1fp0_A KAP-1 corepressor; PHD 93.6 0.071 2.4E-06 30.2 3.2 48 44-95 22-73 (88)
82 3o36_A Transcription intermedi 93.6 0.022 7.6E-07 36.3 1.2 46 46-95 3-52 (184)
83 2cs3_A Protein C14ORF4, MY039 92.8 0.21 7E-06 27.8 4.1 40 45-84 13-52 (93)
84 2yql_A PHD finger protein 21A; 92.7 0.014 5E-07 30.0 -0.6 45 45-93 7-55 (56)
85 2vpb_A Hpygo1, pygopus homolog 92.6 0.11 3.6E-06 27.7 2.8 35 45-79 6-41 (65)
86 3m62_A Ubiquitin conjugation f 92.5 0.13 4.3E-06 40.7 4.1 50 44-97 888-938 (968)
87 2k16_A Transcription initiatio 92.4 0.049 1.7E-06 29.6 1.3 51 45-96 16-70 (75)
88 1xwh_A Autoimmune regulator; P 92.0 0.034 1.2E-06 29.6 0.3 46 45-94 6-55 (66)
89 3lqh_A Histone-lysine N-methyl 91.9 0.078 2.7E-06 34.0 1.9 50 47-96 2-65 (183)
90 2puy_A PHD finger protein 21A; 91.9 0.031 1E-06 29.2 0.0 45 46-94 4-52 (60)
91 3u5n_A E3 ubiquitin-protein li 91.8 0.054 1.8E-06 35.1 1.2 47 45-95 5-55 (207)
92 3v43_A Histone acetyltransfera 91.8 0.29 9.8E-06 28.6 4.2 33 46-79 4-42 (112)
93 3v43_A Histone acetyltransfera 91.5 0.072 2.5E-06 31.3 1.4 47 47-93 61-111 (112)
94 2lv9_A Histone-lysine N-methyl 91.5 0.078 2.7E-06 30.5 1.5 47 46-94 27-76 (98)
95 2e6r_A Jumonji/ARID domain-con 91.4 0.03 1E-06 31.9 -0.3 48 45-93 14-65 (92)
96 1wil_A KIAA1045 protein; ring 91.1 0.23 8E-06 27.8 3.1 35 45-81 13-47 (89)
97 2l43_A N-teminal domain from h 90.9 0.058 2E-06 30.4 0.6 53 45-97 23-78 (88)
98 1zbd_B Rabphilin-3A; G protein 90.4 0.15 5E-06 31.1 2.0 35 44-79 52-88 (134)
99 2yt5_A Metal-response element- 90.0 0.14 4.9E-06 26.9 1.6 50 45-94 4-61 (66)
100 2yw8_A RUN and FYVE domain-con 89.3 0.36 1.2E-05 26.6 2.9 37 45-81 17-53 (82)
101 1wep_A PHF8; structural genomi 89.2 0.44 1.5E-05 26.0 3.3 50 45-95 10-64 (79)
102 1z2q_A LM5-1; membrane protein 89.0 0.44 1.5E-05 26.4 3.2 38 44-81 18-55 (84)
103 1weo_A Cellulose synthase, cat 88.6 1.4 4.7E-05 24.9 4.9 51 45-96 14-69 (93)
104 1z60_A TFIIH basal transcripti 88.3 0.27 9.3E-06 25.7 1.9 43 48-91 16-58 (59)
105 3t7l_A Zinc finger FYVE domain 88.2 0.38 1.3E-05 27.1 2.6 37 46-82 19-55 (90)
106 1joc_A EEA1, early endosomal a 88.1 0.35 1.2E-05 28.9 2.6 37 45-81 67-103 (125)
107 3shb_A E3 ubiquitin-protein li 88.1 0.081 2.8E-06 29.1 -0.3 44 49-93 28-76 (77)
108 1x4u_A Zinc finger, FYVE domai 87.9 0.5 1.7E-05 26.1 3.0 36 45-80 12-47 (84)
109 2kgg_A Histone demethylase jar 87.7 0.21 7.1E-06 25.1 1.2 44 49-92 4-52 (52)
110 2ro1_A Transcription intermedi 87.4 0.17 5.8E-06 32.4 0.9 45 47-95 2-50 (189)
111 2lbm_A Transcriptional regulat 87.2 0.82 2.8E-05 28.0 3.8 47 44-94 60-117 (142)
112 1wen_A Inhibitor of growth fam 87.0 0.56 1.9E-05 25.2 2.7 46 45-95 14-66 (71)
113 2e6s_A E3 ubiquitin-protein li 86.6 0.16 5.3E-06 27.9 0.3 45 48-93 27-76 (77)
114 1wfk_A Zinc finger, FYVE domai 86.5 0.61 2.1E-05 26.1 2.8 37 45-81 7-43 (88)
115 1vfy_A Phosphatidylinositol-3- 86.3 0.7 2.4E-05 24.8 2.9 34 47-80 11-44 (73)
116 2ku3_A Bromodomain-containing 86.2 0.9 3.1E-05 24.4 3.3 50 44-93 13-65 (71)
117 3asl_A E3 ubiquitin-protein li 86.0 0.18 6.3E-06 27.1 0.4 44 49-93 20-68 (70)
118 2xb1_A Pygopus homolog 2, B-ce 85.9 0.53 1.8E-05 27.3 2.4 49 47-95 3-62 (105)
119 1weu_A Inhibitor of growth fam 85.8 0.69 2.3E-05 26.2 2.8 46 45-95 34-86 (91)
120 2d8v_A Zinc finger FYVE domain 85.5 0.64 2.2E-05 24.8 2.3 33 44-81 5-38 (67)
121 2ri7_A Nucleosome-remodeling f 85.2 0.48 1.6E-05 29.6 2.1 48 45-93 6-58 (174)
122 3o70_A PHD finger protein 13; 84.3 0.21 7.2E-06 26.7 0.1 48 44-93 16-66 (68)
123 1y02_A CARP2, FYVE-ring finger 82.6 0.16 5.4E-06 30.4 -0.9 48 45-92 17-64 (120)
124 3mjh_B Early endosome antigen 82.3 0.31 1E-05 22.6 0.2 15 46-60 4-18 (34)
125 2ysm_A Myeloid/lymphoid or mix 82.0 0.2 6.8E-06 29.1 -0.6 44 49-93 56-103 (111)
126 4gne_A Histone-lysine N-methyl 81.6 1.5 5.3E-05 25.5 3.1 47 45-96 13-64 (107)
127 3ask_A E3 ubiquitin-protein li 81.6 0.43 1.5E-05 31.6 0.8 45 48-93 175-224 (226)
128 1dvp_A HRS, hepatocyte growth 81.6 0.88 3E-05 29.6 2.3 35 47-81 161-195 (220)
129 3zyq_A Hepatocyte growth facto 81.3 0.93 3.2E-05 29.7 2.4 36 46-81 163-198 (226)
130 2a20_A Regulating synaptic mem 80.7 1.1 3.8E-05 23.3 2.0 37 44-81 6-43 (62)
131 1wem_A Death associated transc 79.4 2.2 7.6E-05 22.9 3.2 46 47-94 16-70 (76)
132 2zet_C Melanophilin; complex, 79.4 1.1 3.7E-05 27.8 2.1 33 45-78 66-100 (153)
133 3fyb_A Protein of unknown func 79.4 0.78 2.7E-05 26.4 1.3 11 73-83 42-52 (104)
134 2o35_A Hypothetical protein DU 79.2 0.79 2.7E-05 26.4 1.3 11 73-83 43-53 (105)
135 3ql9_A Transcriptional regulat 78.6 2.8 9.5E-05 25.2 3.7 46 45-94 55-111 (129)
136 1x4k_A Skeletal muscle LIM-pro 77.8 1.4 4.7E-05 23.0 2.0 41 47-97 5-45 (72)
137 2kwj_A Zinc finger protein DPF 77.4 0.26 8.9E-06 28.9 -1.1 46 48-94 59-108 (114)
138 1wew_A DNA-binding family prot 76.7 2.8 9.7E-05 22.7 3.1 49 45-94 14-72 (78)
139 2vnf_A ING 4, P29ING4, inhibit 76.5 0.51 1.7E-05 24.5 -0.0 43 46-93 9-58 (60)
140 2gmg_A Hypothetical protein PF 76.4 0.61 2.1E-05 27.1 0.3 27 69-100 73-99 (105)
141 3i2d_A E3 SUMO-protein ligase 75.8 2.2 7.4E-05 30.3 3.0 47 47-96 249-299 (371)
142 4fo9_A E3 SUMO-protein ligase 75.6 2.2 7.6E-05 30.1 3.0 47 48-97 216-266 (360)
143 1g47_A Pinch protein; LIM doma 75.3 2 6.8E-05 22.6 2.2 43 45-97 9-51 (77)
144 1x61_A Thyroid receptor intera 75.0 1.7 5.9E-05 22.6 1.9 39 47-95 5-43 (72)
145 2jmo_A Parkin; IBR, E3 ligase, 74.7 0.21 7.2E-06 27.5 -1.9 14 68-81 55-68 (80)
146 2dj7_A Actin-binding LIM prote 74.6 2.3 7.7E-05 22.9 2.3 41 45-96 13-53 (80)
147 1wev_A Riken cDNA 1110020M19; 74.2 1.6 5.5E-05 24.3 1.7 50 46-95 15-73 (88)
148 1wyh_A SLIM 2, skeletal muscle 74.1 1.9 6.4E-05 22.4 1.9 41 47-97 5-45 (72)
149 3c6w_A P28ING5, inhibitor of g 73.7 0.71 2.4E-05 23.9 0.1 43 46-93 8-57 (59)
150 2co8_A NEDD9 interacting prote 73.7 3.1 0.00011 22.4 2.8 42 45-97 13-54 (82)
151 2g6q_A Inhibitor of growth pro 72.7 0.78 2.7E-05 24.0 0.1 43 46-93 10-59 (62)
152 1x4l_A Skeletal muscle LIM-pro 72.6 2.3 8E-05 22.1 2.0 40 47-96 5-46 (72)
153 1x63_A Skeletal muscle LIM-pro 72.4 2 6.8E-05 23.0 1.8 41 47-97 15-55 (82)
154 1zfo_A LAsp-1; LIM domain, zin 71.2 1.9 6.6E-05 19.1 1.3 29 47-78 3-31 (31)
155 3f6q_B LIM and senescent cell 70.3 2.5 8.6E-05 21.7 1.8 43 45-97 9-51 (72)
156 1iml_A CRIP, cysteine rich int 69.1 1.4 4.7E-05 23.4 0.6 44 46-94 26-70 (76)
157 1wee_A PHD finger family prote 69.0 2.4 8.4E-05 22.5 1.6 49 45-94 14-66 (72)
158 3a1b_A DNA (cytosine-5)-methyl 67.1 6.8 0.00023 24.4 3.5 36 45-84 77-114 (159)
159 1x68_A FHL5 protein; four-and- 66.7 3.1 0.00011 21.9 1.8 40 47-96 5-46 (76)
160 2cu8_A Cysteine-rich protein 2 65.6 3.4 0.00012 21.7 1.8 41 46-97 8-48 (76)
161 1x62_A C-terminal LIM domain p 64.0 5.6 0.00019 21.1 2.5 39 46-96 14-52 (79)
162 3mpx_A FYVE, rhogef and PH dom 62.7 1.6 5.3E-05 30.9 0.0 50 45-95 373-430 (434)
163 2d8y_A Eplin protein; LIM doma 60.1 11 0.00037 20.5 3.3 39 47-96 15-53 (91)
164 2pv0_B DNA (cytosine-5)-methyl 59.5 8.9 0.0003 27.3 3.4 36 45-83 91-127 (386)
165 2l3k_A Rhombotin-2, linker, LI 59.2 3 0.0001 24.3 0.8 34 47-82 36-69 (123)
166 2ct7_A Ring finger protein 31; 59.0 0.66 2.3E-05 25.7 -2.0 32 50-81 28-61 (86)
167 1m3v_A FLIN4, fusion of the LI 58.2 13 0.00044 21.5 3.5 49 47-97 32-81 (122)
168 2jvx_A NF-kappa-B essential mo 58.1 2.1 7E-05 18.8 -0.0 11 86-96 4-14 (28)
169 2ehe_A Four and A half LIM dom 56.5 5 0.00017 21.3 1.4 40 47-96 15-54 (82)
170 2cup_A Skeletal muscle LIM-pro 55.5 6.8 0.00023 21.6 1.9 46 47-97 33-78 (101)
171 2d8x_A Protein pinch; LIM doma 54.7 7.5 0.00026 19.9 1.9 39 47-97 5-43 (70)
172 2pk7_A Uncharacterized protein 54.2 3.1 0.00011 22.2 0.3 17 80-96 3-19 (69)
173 2jny_A Uncharacterized BCR; st 52.9 2.9 9.9E-05 22.2 0.0 17 80-96 5-21 (67)
174 1x64_A Alpha-actinin-2 associa 52.4 9.3 0.00032 20.7 2.1 40 46-97 24-63 (89)
175 2cor_A Pinch protein; LIM doma 51.9 10 0.00036 20.0 2.2 41 45-97 13-53 (79)
176 2cur_A Skeletal muscle LIM-pro 51.7 8.3 0.00028 19.7 1.7 38 47-96 5-42 (69)
177 2egq_A FHL1 protein; LIM domai 51.3 6.4 0.00022 20.6 1.3 41 47-97 15-58 (77)
178 2das_A Zinc finger MYM-type pr 51.0 21 0.00073 18.5 3.1 36 46-81 19-55 (62)
179 2jmi_A Protein YNG1, ING1 homo 50.7 5.9 0.0002 22.2 1.1 44 45-93 24-75 (90)
180 1a7i_A QCRP2 (LIM1); LIM domai 49.4 3.1 0.00011 22.2 -0.2 40 47-97 7-46 (81)
181 2xjy_A Rhombotin-2; oncoprotei 48.8 17 0.00058 21.0 3.0 48 47-96 29-77 (131)
182 2d8z_A Four and A half LIM dom 48.1 12 0.00041 19.0 2.0 38 47-96 5-42 (70)
183 2dar_A PDZ and LIM domain prot 48.0 8 0.00027 21.0 1.4 40 46-97 24-63 (90)
184 2rsd_A E3 SUMO-protein ligase 47.9 7.8 0.00027 20.2 1.2 46 47-93 10-64 (68)
185 1loi_A Cyclic 3',5'-AMP specif 47.8 0.85 2.9E-05 19.0 -2.1 12 72-83 6-17 (26)
186 2rgt_A Fusion of LIM/homeobox 45.1 14 0.00049 22.5 2.3 10 48-57 34-43 (169)
187 1wd2_A Ariadne-1 protein homol 44.0 3.6 0.00012 21.2 -0.5 37 47-83 6-46 (60)
188 2lcq_A Putative toxin VAPC6; P 43.8 5.6 0.00019 24.4 0.3 26 68-99 137-162 (165)
189 1nyp_A Pinch protein; LIM doma 43.6 11 0.00038 18.9 1.5 39 47-97 5-43 (66)
190 2jne_A Hypothetical protein YF 43.2 6.9 0.00024 22.4 0.6 44 46-98 31-74 (101)
191 1v6g_A Actin binding LIM prote 43.2 15 0.00053 19.3 2.0 37 48-96 16-52 (81)
192 2jr6_A UPF0434 protein NMA0874 42.8 2.9 0.0001 22.2 -1.0 16 81-96 4-19 (68)
193 2kpi_A Uncharacterized protein 42.7 18 0.00061 18.3 2.1 28 46-73 9-38 (56)
194 2iyb_E Testin, TESS, TES; LIM 41.5 10 0.00034 19.2 1.0 39 48-96 3-43 (65)
195 2fiy_A Protein FDHE homolog; F 40.7 3.6 0.00012 28.3 -1.0 48 45-94 180-231 (309)
196 2l4z_A DNA endonuclease RBBP8, 40.4 13 0.00043 21.7 1.5 39 47-96 61-99 (123)
197 3kqi_A GRC5, PHD finger protei 40.3 32 0.0011 18.1 3.0 47 48-94 10-61 (75)
198 2cuq_A Four and A half LIM dom 40.0 13 0.00043 19.5 1.3 38 47-96 15-52 (80)
199 2ffw_A Midline-1; B-BOX, ring 38.8 45 0.0015 17.7 3.5 36 45-81 28-63 (78)
200 3o7a_A PHD finger protein 13 v 38.2 10 0.00035 18.6 0.7 41 52-93 8-51 (52)
201 3kv5_D JMJC domain-containing 38.0 25 0.00086 25.7 3.0 47 46-93 36-87 (488)
202 2jyp_A Aragonite protein AP7; 37.9 10 0.00035 16.9 0.6 25 46-74 8-32 (36)
203 1rut_X Flinc4, fusion protein 37.8 22 0.00075 22.1 2.4 48 47-96 32-80 (188)
204 2dlo_A Thyroid receptor-intera 37.8 14 0.00046 19.5 1.2 38 47-96 15-52 (81)
205 2jtn_A LIM domain-binding prot 37.7 19 0.00064 22.3 2.1 45 46-96 86-130 (182)
206 2hf1_A Tetraacyldisaccharide-1 36.9 2.9 0.0001 22.2 -1.6 13 84-96 7-19 (68)
207 2js4_A UPF0434 protein BB2007; 36.6 3.3 0.00011 22.2 -1.4 16 81-96 4-19 (70)
208 1wig_A KIAA1808 protein; LIM d 36.5 19 0.00066 18.6 1.7 10 48-57 6-15 (73)
209 2csz_A Synaptotagmin-like prot 36.3 22 0.00077 19.3 1.9 34 44-77 22-56 (76)
210 2kdx_A HYPA, hydrogenase/ureas 36.1 19 0.00064 20.8 1.8 27 63-96 74-101 (119)
211 1x3h_A Leupaxin; paxillin fami 35.5 16 0.00056 19.0 1.3 39 47-97 15-53 (80)
212 1b8t_A Protein (CRP1); LIM dom 33.1 15 0.0005 23.0 1.0 39 47-96 115-153 (192)
213 2jrp_A Putative cytoplasmic pr 31.7 29 0.00099 19.0 1.9 12 48-59 3-14 (81)
214 1qdp_A Robustoxin; neurotoxin, 31.5 1.4 4.7E-05 20.9 -3.0 14 76-89 19-32 (42)
215 2roo_A Neurotoxin MAGI-4; spid 31.4 1.3 4.6E-05 21.1 -3.1 14 76-89 19-32 (43)
216 1j2o_A FLIN2, fusion of rhombo 29.4 38 0.0013 19.1 2.3 36 47-84 30-66 (114)
217 3pwf_A Rubrerythrin; non heme 29.0 30 0.001 21.5 1.9 20 68-94 143-162 (170)
218 4gut_A Lysine-specific histone 28.8 61 0.0021 25.0 3.9 40 45-85 11-57 (776)
219 2xqn_T Testin, TESS; metal-bin 28.0 26 0.00089 20.0 1.4 45 47-96 30-74 (126)
220 3c5k_A HD6, histone deacetylas 27.4 36 0.0012 19.5 1.9 25 47-75 24-48 (109)
221 1l8d_A DNA double-strand break 26.6 16 0.00054 20.8 0.3 12 85-96 47-58 (112)
222 2vrw_B P95VAV, VAV1, proto-onc 24.2 58 0.002 22.6 2.9 35 45-80 355-391 (406)
223 1x4i_A Inhibitor of growth pro 22.7 66 0.0023 16.8 2.3 45 47-94 6-55 (70)
224 3vhs_A ATPase wrnip1; zinc fin 21.0 31 0.0011 14.6 0.6 9 87-95 8-16 (29)
225 4bbq_A Lysine-specific demethy 20.8 40 0.0014 19.1 1.2 32 62-93 74-113 (117)
226 3i1m_R 30S ribosomal protein S 20.6 27 0.00093 18.8 0.5 18 82-99 5-22 (75)
227 1kbe_A Kinase suppressor of RA 20.3 34 0.0012 16.7 0.8 29 48-79 15-43 (49)
228 2yqp_A Probable ATP-dependent 20.1 54 0.0019 16.8 1.5 21 35-55 7-27 (60)
No 1
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.87 E-value=4.8e-22 Score=115.91 Aligned_cols=84 Identities=24% Similarity=0.544 Sum_probs=70.9
Q ss_pred CCCCCccccCCCCHHHHhhccchhhccccCCCCCCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccc
Q 044807 12 VAPQPPIMIMGLDECTIKSFQKLVLEESKCLPGPNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVC 91 (105)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~C 91 (105)
..........+++++.+..||...+...... ..++..|+||++.|..++.+..++ |||.||..||..|+..+.+||+|
T Consensus 6 ~~~~~~~~~~~~s~~~i~~lp~~~~~~~~~~-~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~C 83 (91)
T 2l0b_A 6 HHHSHMVANPPASKESIDALPEILVTEDHGA-VGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVC 83 (91)
T ss_dssp CCSCCSSCCCCCCHHHHHTSCEEECCTTCSS-SSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTT
T ss_pred ccCCCCcCCCCCCHHHHHhCCCeeecccccc-cCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCc
Confidence 3444567778999999999998887654432 356789999999999888888899 99999999999999999999999
Q ss_pred cCCCCC
Q 044807 92 INSATP 97 (105)
Q Consensus 92 r~~~~~ 97 (105)
|..+..
T Consensus 84 r~~~~~ 89 (91)
T 2l0b_A 84 RCMFPP 89 (91)
T ss_dssp CCBSSC
T ss_pred CccCCC
Confidence 998764
No 2
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.3e-21 Score=107.61 Aligned_cols=67 Identities=25% Similarity=0.811 Sum_probs=54.4
Q ss_pred hhccchhhccccCCCCCCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCCC
Q 044807 29 KSFQKLVLEESKCLPGPNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATPV 98 (105)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 98 (105)
..+|...+..... ..++..|+||++.|..++.+..++ |+|.||..||..|+..+.+||+||.++...
T Consensus 7 ~~lp~~~~~~~~~--~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 7 GQLPSYRFNPNNH--QSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSCCCEEBCSSSC--SSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred hhCCcEEecCccc--cCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 3455555443322 356789999999999888888899 999999999999999999999999988764
No 3
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.79 E-value=1.3e-19 Score=96.10 Aligned_cols=52 Identities=35% Similarity=0.889 Sum_probs=46.6
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
+++.+|+||++.|..++.+..++.|||.||..||..|+..+.+||+||.++.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 4578999999999888877777669999999999999999999999999874
No 4
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=3.8e-19 Score=98.39 Aligned_cols=54 Identities=35% Similarity=0.831 Sum_probs=48.3
Q ss_pred CCCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCCC
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATPV 98 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 98 (105)
......|+||++.|..+..+..++ |||.||..||..|+..+.+||+||..+...
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 456789999999998877888898 999999999999999999999999998754
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=3.8e-19 Score=99.61 Aligned_cols=56 Identities=25% Similarity=0.751 Sum_probs=49.6
Q ss_pred CCCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCCCCC
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATPVHA 100 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 100 (105)
...+..|+||++.|..+..+..++ |+|.||..||..|+..+.+||+||..+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ 67 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence 355789999999998888888888 99999999999999998999999999876543
No 6
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=6.5e-19 Score=99.60 Aligned_cols=55 Identities=35% Similarity=0.827 Sum_probs=48.9
Q ss_pred CCCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCCCC
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATPVH 99 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 99 (105)
.....+|+||++.|..+..+..++ |+|.||..||..|+..+.+||+||..+....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 66 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSC
T ss_pred CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCcc
Confidence 355789999999998888888888 9999999999999999999999999987644
No 7
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-18 Score=98.80 Aligned_cols=53 Identities=26% Similarity=0.773 Sum_probs=42.8
Q ss_pred CCccccccccccccc-----------CCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 45 PNSSACSICLSEYLS-----------QETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~-----------~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
.++..|+||++.|.. ++.++.++.|+|.||..||.+||..+.+||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 356778888888854 34354554599999999999999999999999998764
No 8
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.71 E-value=4.7e-18 Score=94.27 Aligned_cols=55 Identities=22% Similarity=0.603 Sum_probs=46.3
Q ss_pred CCCcccccccccccccC----CceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCCCC
Q 044807 44 GPNSSACSICLSEYLSQ----ETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATPVH 99 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~----~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 99 (105)
..++..|+||++.|.+. ..+..++ |||.||..||..|+..+.+||+||..+....
T Consensus 7 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (71)
T 3ng2_A 7 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 65 (71)
T ss_dssp CTTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred CCCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence 35678999999998763 4456677 9999999999999999999999999987543
No 9
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=4.8e-18 Score=94.14 Aligned_cols=56 Identities=27% Similarity=0.720 Sum_probs=49.0
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCCCCCcCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATPVHADYVNP 105 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~~~~ 105 (105)
.+...|+||++.+.+ ..++ |||.||..||..|+....+||+||..+......++.|
T Consensus 13 ~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 68 (70)
T 2ecn_A 13 TDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGANESSGPS 68 (70)
T ss_dssp CCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCCCCCCCC
T ss_pred CCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCCccccCC
Confidence 457899999999865 5678 9999999999999999999999999998877776654
No 10
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.70 E-value=1e-17 Score=88.68 Aligned_cols=51 Identities=29% Similarity=0.783 Sum_probs=43.7
Q ss_pred CCcccccccccccccCC-ceeEeCCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 45 PNSSACSICLSEYLSQE-TIKCIPECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~-~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
.++..|+||++.|.+++ .+..++ |||.||..||..|+....+||+||..+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 45789999999986644 466677 9999999999999998899999999864
No 11
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.70 E-value=2.3e-17 Score=99.27 Aligned_cols=53 Identities=21% Similarity=0.437 Sum_probs=42.5
Q ss_pred CcccccccccccccCC---------------ceeEeCCCCCccchhhHHHHh-----cCCCCCccccCCCCCCC
Q 044807 46 NSSACSICLSEYLSQE---------------TIKCIPECKHCFHAECIDEWP-----RLNDKCPVCINSATPVH 99 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~Fh~~Ci~~wl-----~~~~~CP~Cr~~~~~~~ 99 (105)
.+..|+|||+.|..+. .+.+++ |+|.||..||..|+ ..+.+||+||..+....
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~ 96 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT 96 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence 4579999999996543 233667 99999999999999 45778999999886543
No 12
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-17 Score=91.57 Aligned_cols=53 Identities=23% Similarity=0.632 Sum_probs=44.6
Q ss_pred CCCcccccccccccccC----CceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 44 GPNSSACSICLSEYLSQ----ETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~----~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
..+...|+||++.|.+. ..+..++ |||.||..||..|+..+.+||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 35578999999998764 3346677 99999999999999999999999998753
No 13
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.68 E-value=1.3e-17 Score=90.65 Aligned_cols=53 Identities=23% Similarity=0.610 Sum_probs=44.9
Q ss_pred CcccccccccccccC----CceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCCCC
Q 044807 46 NSSACSICLSEYLSQ----ETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATPVH 99 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~----~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 99 (105)
++.+|+||++.+.+. ..+..++ |||.||..||..|+..+.+||+||..+...+
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 58 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 58 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTC
T ss_pred CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccc
Confidence 467999999998763 3456777 9999999999999999999999999987543
No 14
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.67 E-value=5.6e-17 Score=96.82 Aligned_cols=51 Identities=25% Similarity=0.578 Sum_probs=43.2
Q ss_pred CCcccccccccccccCC---------------ceeEeCCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 45 PNSSACSICLSEYLSQE---------------TIKCIPECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
.++..|+||++.|...- .+..++ |+|.||..||..||..+.+||+||.++.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 45789999999987541 255677 9999999999999999999999999864
No 15
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.66 E-value=5.2e-17 Score=89.41 Aligned_cols=51 Identities=33% Similarity=0.772 Sum_probs=43.5
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATPV 98 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 98 (105)
..+..|+||++.+.+. +..++ |||.||..||..|+..+.+||+||..+...
T Consensus 3 ~~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 3 TVAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred CCCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence 3467999999998643 46677 999999999999999999999999988653
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=7.5e-17 Score=89.62 Aligned_cols=50 Identities=26% Similarity=0.656 Sum_probs=43.4
Q ss_pred CCCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
..+...|+||++.+.+ .+.++ |||.||..||..|+..+..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 12 SLTVPECAICLQTCVH---PVSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSSCCBCSSSSSBCSS---EEEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCCccCCcccCC---CEEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 3457899999999865 46678 99999999999999999999999998764
No 17
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=88.34 Aligned_cols=53 Identities=23% Similarity=0.447 Sum_probs=43.9
Q ss_pred CCCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCCCC
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATPVH 99 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 99 (105)
..+...|+||++.|.+. +.+++ |||.||..||..|+..+..||+||..+...+
T Consensus 12 ~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 12 LTPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CCGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred cCCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 34578999999998763 33347 9999999999999998999999999987543
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4.5e-16 Score=89.43 Aligned_cols=53 Identities=19% Similarity=0.539 Sum_probs=44.6
Q ss_pred CCCcccccccccccccCCc-eeEeCCCCCccchhhHHHHhcCC---CCCccccCCCCC
Q 044807 44 GPNSSACSICLSEYLSQET-IKCIPECKHCFHAECIDEWPRLN---DKCPVCINSATP 97 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~-~~~lp~C~H~Fh~~Ci~~wl~~~---~~CP~Cr~~~~~ 97 (105)
..+...|+||++.|.+.+. .+.++ |||.||..||..|+... ..||+||..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 3557899999999987654 66777 99999999999999865 789999998754
No 19
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.62 E-value=5.7e-16 Score=86.74 Aligned_cols=54 Identities=26% Similarity=0.519 Sum_probs=43.3
Q ss_pred CCCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCC--CCCccccCCCCCCCC
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLN--DKCPVCINSATPVHA 100 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~~ 100 (105)
..+...|+||++.|.+. +.++.|||.||..||..|+..+ ..||+||..+...+.
T Consensus 12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~ 67 (74)
T 2yur_A 12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDA 67 (74)
T ss_dssp SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTT
T ss_pred CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccc
Confidence 34578999999999763 4465599999999999999764 689999998665443
No 20
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.62 E-value=2e-16 Score=98.24 Aligned_cols=48 Identities=27% Similarity=0.758 Sum_probs=42.5
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATPV 98 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 98 (105)
+..|+||++.|.+ ++.++ |||.||..||..|+..+.+||+||.++...
T Consensus 53 ~~~C~iC~~~~~~---~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 100 (138)
T 4ayc_A 53 ELQCIICSEYFIE---AVTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK 100 (138)
T ss_dssp HSBCTTTCSBCSS---EEEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred cCCCcccCcccCC---ceECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence 5689999999865 46788 999999999999999999999999998653
No 21
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=5.2e-16 Score=88.30 Aligned_cols=53 Identities=23% Similarity=0.600 Sum_probs=43.8
Q ss_pred CCCcccccccccccccCCceeEeCCCC-----CccchhhHHHHhcCC--CCCccccCCCCCC
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPECK-----HCFHAECIDEWPRLN--DKCPVCINSATPV 98 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C~-----H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~~ 98 (105)
..++..|.||+++|..++.+ ++| |+ |.||..||.+||..+ .+||+||..+...
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 34568999999999776665 578 96 999999999999764 5899999988653
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=6e-16 Score=87.92 Aligned_cols=48 Identities=23% Similarity=0.500 Sum_probs=42.2
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
.....|+||++.|.+ .++++ |||.||..||..|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQN---PVVTK-CRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCS---EEECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcC---eeEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 456899999999865 45677 9999999999999998999999999875
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.8e-15 Score=84.14 Aligned_cols=50 Identities=30% Similarity=0.541 Sum_probs=41.9
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhc---CCCCCccccCCCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPR---LNDKCPVCINSATPV 98 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~---~~~~CP~Cr~~~~~~ 98 (105)
.+...|+||++.|.+ .+.++ |||.||..||..|+. ....||+||..+...
T Consensus 18 ~~~~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSS---EEECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCC---eEEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 457899999999865 45567 999999999999997 456899999988653
No 24
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.58 E-value=1.4e-16 Score=96.44 Aligned_cols=52 Identities=25% Similarity=0.542 Sum_probs=1.6
Q ss_pred CCcccccccccccccCC---------------ceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 45 PNSSACSICLSEYLSQE---------------TIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~---------------~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
..+..|+||++.|.... .+..++ |+|.||..||..||..+.+||+||.++..
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF 112 (117)
T ss_dssp CCC-----------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence 45689999999996521 233346 99999999999999999999999998643
No 25
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=2e-15 Score=82.65 Aligned_cols=50 Identities=24% Similarity=0.447 Sum_probs=41.6
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhc-CCCCCccccCCCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPR-LNDKCPVCINSATPV 98 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~~ 98 (105)
.+...|+||++.+.+. +.++ |||.||..||..|+. ....||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSP---KQTE-CGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSC---CCCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCe---eECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 4578999999998764 3367 999999999999995 567899999988653
No 26
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.57 E-value=1.4e-15 Score=93.04 Aligned_cols=53 Identities=23% Similarity=0.632 Sum_probs=45.4
Q ss_pred CCcccccccccccccC----CceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCCC
Q 044807 45 PNSSACSICLSEYLSQ----ETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATPV 98 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~----~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 98 (105)
.+...|+||++.|.+. ..++.++ |||.||..||..|+..+.+||+||..+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 4578999999998764 3457777 999999999999999999999999988653
No 27
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.56 E-value=4.8e-15 Score=83.51 Aligned_cols=49 Identities=16% Similarity=0.368 Sum_probs=42.6
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcC-CCCCccccCCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL-NDKCPVCINSATP 97 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 97 (105)
.+...|+||++.|.+ .+.++ |||.||..||..|+.. +.+||+||..+..
T Consensus 6 ~~~~~C~IC~~~~~~---Pv~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKD---PVIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSS---EEEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccC---CEEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 457899999999876 45678 9999999999999987 7889999998864
No 28
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.55 E-value=1.2e-15 Score=90.02 Aligned_cols=48 Identities=21% Similarity=0.526 Sum_probs=41.3
Q ss_pred CcccccccccccccCCceeE-eCCCCCccchhhHHHHhcCC-CCCccccCCCCC
Q 044807 46 NSSACSICLSEYLSQETIKC-IPECKHCFHAECIDEWPRLN-DKCPVCINSATP 97 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~-lp~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 97 (105)
+...|+||++.|.+ .+. ++ |||.||..||..|+... .+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRD---ARLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccC---ccccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 46899999999965 344 77 99999999999999887 699999998754
No 29
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.54 E-value=7.9e-15 Score=80.00 Aligned_cols=51 Identities=20% Similarity=0.461 Sum_probs=41.0
Q ss_pred Cccccccccc-ccccCCce-eEeCCCCCccchhhHHHHhcC-CCCCccccCCCCC
Q 044807 46 NSSACSICLS-EYLSQETI-KCIPECKHCFHAECIDEWPRL-NDKCPVCINSATP 97 (105)
Q Consensus 46 ~~~~C~ICl~-~~~~~~~~-~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 97 (105)
++..|+||++ .+.+.... ..++ |||.||..||..|+.. ...||+||..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 4678999999 77665443 3466 9999999999999765 5679999998864
No 30
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.54 E-value=4.6e-15 Score=90.48 Aligned_cols=48 Identities=21% Similarity=0.438 Sum_probs=41.0
Q ss_pred CcccccccccccccCCceeEeCCCCCccchhhHHHHhcCC-CCCccccCCCCC
Q 044807 46 NSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLN-DKCPVCINSATP 97 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 97 (105)
+...|+||++.|.+ .+.++ |||.||..||..|+... ..||+||..+..
T Consensus 51 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFR---PITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcC---cEEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 45789999999975 45677 99999999999999864 489999999865
No 31
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.54 E-value=2.3e-15 Score=84.85 Aligned_cols=49 Identities=27% Similarity=0.543 Sum_probs=41.6
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcC-------CCCCccccCCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL-------NDKCPVCINSATP 97 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-------~~~CP~Cr~~~~~ 97 (105)
.+...|+||++.|.+. +.++ |||.||..||..|+.. ...||+||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 4578999999998663 4467 9999999999999976 5689999998864
No 32
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.53 E-value=4e-15 Score=87.46 Aligned_cols=48 Identities=25% Similarity=0.651 Sum_probs=41.5
Q ss_pred CcccccccccccccCCceeEe-CCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 46 NSSACSICLSEYLSQETIKCI-PECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~l-p~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
+...|+||++.|.+ .+.+ + |||.||..||..|+..+.+||+||..+..
T Consensus 21 ~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNI---AMIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSS---EEECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCC---cCEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 36799999999876 3444 6 99999999999999999999999998764
No 33
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=1.1e-14 Score=78.95 Aligned_cols=44 Identities=32% Similarity=0.599 Sum_probs=37.0
Q ss_pred CCCcccccccccccccCCceeEeCCCCCccchhhHHHHhc---CCCCCccc
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPR---LNDKCPVC 91 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~---~~~~CP~C 91 (105)
..++..|+||++.|.+ .+.++ |||.||..||..|+. ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQK---PVTID-CGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSS---CEECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCC---eEEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3457899999999875 45567 999999999999997 46689998
No 34
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.53 E-value=7e-15 Score=87.69 Aligned_cols=49 Identities=22% Similarity=0.585 Sum_probs=42.4
Q ss_pred CcccccccccccccCCceeEe-CCCCCccchhhHHHHhcCCCCCccccCCCCCC
Q 044807 46 NSSACSICLSEYLSQETIKCI-PECKHCFHAECIDEWPRLNDKCPVCINSATPV 98 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~l-p~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 98 (105)
+...|+||++.|.+ .+.+ + |||.||..||..|+..+..||+||..+...
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFID---ATTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSS---EEEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhC---cCEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence 47899999999865 3444 7 999999999999999999999999988653
No 35
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.53 E-value=3.6e-15 Score=94.95 Aligned_cols=77 Identities=21% Similarity=0.356 Sum_probs=51.6
Q ss_pred cccCCCCHHHHhhccchhhccccC-----CCCCCcccccccccccccCCceeEeCCCCCccchhhHHHHhcC-CCCCccc
Q 044807 18 IMIMGLDECTIKSFQKLVLEESKC-----LPGPNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL-NDKCPVC 91 (105)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~C 91 (105)
....++....+...+......... ....+...|+||++.|.+. +.+++ |||.||..||..|+.. ...||+|
T Consensus 20 ~~~~~l~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~C 96 (165)
T 2ckl_B 20 SKTWELSLYELQRTPQEAITDGLEIVVSPRSLHSELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTC 96 (165)
T ss_dssp -CCCCCCHHHHHCCCCCCCCSCCEEC----CCHHHHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTT
T ss_pred CccccCCHHHHhcCchhhhccccccccchhhCCCCCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCC
Confidence 344566666665544332222111 0122456999999998762 33347 9999999999999987 7789999
Q ss_pred cCCCCC
Q 044807 92 INSATP 97 (105)
Q Consensus 92 r~~~~~ 97 (105)
|..+..
T Consensus 97 r~~~~~ 102 (165)
T 2ckl_B 97 RKKLVS 102 (165)
T ss_dssp CCBCCS
T ss_pred CCcCCC
Confidence 998854
No 36
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.52 E-value=9.8e-15 Score=84.61 Aligned_cols=50 Identities=26% Similarity=0.551 Sum_probs=41.0
Q ss_pred CCCcccccccccccccCCceeEeCCCCCccchhhHHHHhcC--CCCCccccCCCC
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL--NDKCPVCINSAT 96 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~ 96 (105)
..+...|+||++.|.+. +.++.|||.||..||..|+.. ...||+||..+.
T Consensus 10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 35678999999998763 455549999999999999964 368999999874
No 37
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.52 E-value=9.7e-15 Score=83.08 Aligned_cols=49 Identities=27% Similarity=0.525 Sum_probs=41.7
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcC------CCCCccccCCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL------NDKCPVCINSATP 97 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~------~~~CP~Cr~~~~~ 97 (105)
.+...|+||++.|.+. ..++ |||.||..||..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4578999999998663 4677 9999999999999976 6689999998764
No 38
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=2.1e-14 Score=80.35 Aligned_cols=54 Identities=22% Similarity=0.522 Sum_probs=43.6
Q ss_pred CCCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCC--CCCccccCCCCCCCC
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLN--DKCPVCINSATPVHA 100 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~~ 100 (105)
.+...+|+||.+.|..++ .... |+|.||..||..||+.+ .+||+||.++.....
T Consensus 12 ~~~i~~C~IC~~~i~~g~--~C~~-C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~ 67 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQ--SCET-CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIP 67 (74)
T ss_dssp SSSSCBCSSSCCBCSSSE--ECSS-SCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCC
T ss_pred cCCCCcCcchhhHcccCC--ccCC-CCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCC
Confidence 455689999999997653 3334 99999999999999887 889999998765433
No 39
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.3e-14 Score=82.54 Aligned_cols=49 Identities=29% Similarity=0.666 Sum_probs=41.8
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcC------CCCCccccCCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL------NDKCPVCINSATP 97 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~------~~~CP~Cr~~~~~ 97 (105)
.+...|+||++.+.+. ..++ |||.||..||..|+.. ...||+||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4578999999998653 4567 9999999999999976 7789999998864
No 40
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.9e-14 Score=76.57 Aligned_cols=43 Identities=35% Similarity=0.796 Sum_probs=36.0
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHh---cCCCCCccc
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWP---RLNDKCPVC 91 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl---~~~~~CP~C 91 (105)
.+...|+||++.+.+. +.++ |||.||..||..|+ .....||+|
T Consensus 13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4578999999998764 4567 99999999999995 456789998
No 41
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.49 E-value=8.3e-15 Score=89.60 Aligned_cols=55 Identities=24% Similarity=0.652 Sum_probs=45.8
Q ss_pred CCCcccccccccccccC----CceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCCCC
Q 044807 44 GPNSSACSICLSEYLSQ----ETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATPVH 99 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~----~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 99 (105)
..+...|+||++.|... ..+..++ |||.||..||.+|+..+.+||+||..+...+
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 127 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKR 127 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhc
Confidence 35678999999998763 2346677 9999999999999999999999999987543
No 42
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.48 E-value=7.6e-14 Score=78.92 Aligned_cols=59 Identities=17% Similarity=0.295 Sum_probs=44.6
Q ss_pred CCcccccccccccccCCce-eEeCCCCCccchhhHHHHhcC-CCCCccccCCCCCCCCcCCC
Q 044807 45 PNSSACSICLSEYLSQETI-KCIPECKHCFHAECIDEWPRL-NDKCPVCINSATPVHADYVN 104 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~-~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~~~~~~ 104 (105)
.++.+|+||++.+...+.. .-++ |||.||..|+..++.. ...||+||..+......+.+
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~ 69 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKP 69 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCS
T ss_pred ccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhcc
Confidence 5678999999988544332 2245 9999999999998754 67899999998766555443
No 43
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.47 E-value=3.2e-14 Score=89.54 Aligned_cols=49 Identities=18% Similarity=0.382 Sum_probs=41.7
Q ss_pred CcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCC-CCccccCCCCCC
Q 044807 46 NSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLND-KCPVCINSATPV 98 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~~~ 98 (105)
+...|+||++.|.+ .+.++ |||.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~---pv~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQ---PVTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSS---EEECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcC---CEEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 45789999999866 45578 999999999999998754 899999998754
No 44
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.46 E-value=2e-14 Score=78.44 Aligned_cols=51 Identities=20% Similarity=0.363 Sum_probs=42.7
Q ss_pred CCcccccccccccccCCceeEe--CCCCCc-cchhhHHHHhcCCCCCccccCCCCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCI--PECKHC-FHAECIDEWPRLNDKCPVCINSATPVH 99 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~l--p~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 99 (105)
.++.+|.||++.+.+ +..+ | |||. ||..|+..|+..+..||+||.++..+.
T Consensus 6 ~~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i 59 (64)
T 2vje_A 6 NAIEPCVICQGRPKN---GCIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQMIV 59 (64)
T ss_dssp GGGSCCTTTSSSCSC---EEEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCCEEE
T ss_pred CCcCCCCcCCCCCCC---EEEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchhceE
Confidence 456799999998755 3444 8 9999 899999999998899999999987543
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.46 E-value=1.2e-14 Score=87.70 Aligned_cols=50 Identities=28% Similarity=0.545 Sum_probs=42.1
Q ss_pred CcccccccccccccCCceeEeCCCCCccchhhHHHHhcC-CCCCccccCCCCCCC
Q 044807 46 NSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL-NDKCPVCINSATPVH 99 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~~~ 99 (105)
+...|+||++.+.+ .+.++ |||.||..||..|+.. ..+||+||..+....
T Consensus 22 ~~~~C~IC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~ 72 (116)
T 1rmd_A 22 KSISCQICEHILAD---PVETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTD 72 (116)
T ss_dssp HHTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred CCCCCCCCCcHhcC---cEEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence 35789999999865 35577 9999999999999986 778999999987543
No 46
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.45 E-value=1e-14 Score=87.78 Aligned_cols=49 Identities=20% Similarity=0.563 Sum_probs=41.5
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcC-CCCCccccCCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL-NDKCPVCINSATP 97 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 97 (105)
.++..|+||++.|.+ .+.++ |||.||..||..|+.. ...||+||..+..
T Consensus 13 ~~~~~C~iC~~~~~~---p~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVE---PVTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSS---CEECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCc---eeEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 446899999999865 45667 9999999999999977 6789999998753
No 47
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.44 E-value=5.5e-14 Score=83.96 Aligned_cols=47 Identities=28% Similarity=0.589 Sum_probs=39.8
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcCCC---CCccccCCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLND---KCPVCINSATP 97 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~---~CP~Cr~~~~~ 97 (105)
...|+||++.|.+. ..++ |||.||..||..|+.... +||+||..+..
T Consensus 21 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 57999999998653 4467 999999999999998654 89999998764
No 48
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=99.44 E-value=2e-13 Score=96.90 Aligned_cols=55 Identities=25% Similarity=0.634 Sum_probs=46.5
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhc-CCCCCccccCCCCCCCCcCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPR-LNDKCPVCINSATPVHADYVNP 105 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~~~~~~~~~ 105 (105)
...|+||++.+.+ ++.+| |||.||..||..|+. ...+||+||..+.....-.++|
T Consensus 332 ~~~C~ICle~~~~---pv~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v~p 387 (389)
T 2y1n_A 332 FQLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVDP 387 (389)
T ss_dssp SSBCTTTSSSBCC---EEEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEEECSCCT
T ss_pred CCCCCccCcCCCC---eEEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCceeEecCC
Confidence 4799999999855 56788 999999999999998 7889999999988766555544
No 49
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.44 E-value=3.8e-14 Score=85.75 Aligned_cols=49 Identities=31% Similarity=0.491 Sum_probs=42.1
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCC-CCccccCCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLND-KCPVCINSATP 97 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~~ 97 (105)
.+...|+||++.+.+. +.++ |||.||..||..|+.... +||+||..+..
T Consensus 16 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 5578999999998763 5577 999999999999998755 99999998865
No 50
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.41 E-value=2.2e-13 Score=78.14 Aligned_cols=49 Identities=10% Similarity=-0.029 Sum_probs=43.7
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
.+...|+||++.|.+ .++++ |||.|+..||..|+..+.+||+|+..+..
T Consensus 12 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTD---PVRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcC---CeECC-CCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 457999999999977 46788 99999999999999988999999998764
No 51
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.39 E-value=2.9e-13 Score=79.86 Aligned_cols=49 Identities=10% Similarity=-0.017 Sum_probs=43.9
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
.+...|+||++.|.+ .++++ |||.|+..||..|+..+.+||+|+.++..
T Consensus 27 p~~~~CpI~~~~m~d---PV~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTD---PVRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSS---EEEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccC---CeECC-CCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 457899999999977 56788 99999999999999988999999998865
No 52
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.38 E-value=8.9e-14 Score=77.79 Aligned_cols=49 Identities=29% Similarity=0.688 Sum_probs=40.7
Q ss_pred CcccccccccccccCCceeEeCCCCCc-cchhhHHHHhcCCCCCccccCCCCCCCCcC
Q 044807 46 NSSACSICLSEYLSQETIKCIPECKHC-FHAECIDEWPRLNDKCPVCINSATPVHADY 102 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 102 (105)
++..|+||++.+.+ ++.+| |||. ||..|+..| ..||+||..+.....-|
T Consensus 23 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~ 72 (74)
T 4ic3_A 23 EEKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEAV----DKCPMCYTVITFKQKIL 72 (74)
T ss_dssp HHTBCTTTSSSBCC---EEEET-TCCBCCCHHHHTTC----SBCTTTCCBCSEEEECB
T ss_pred cCCCCCCCCCCCCC---EEEcC-CCChhHHHHhhhcC----ccCCCcCcCccCcEEEe
Confidence 35799999998765 56788 9999 999999998 88999999987654433
No 53
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.38 E-value=7.4e-13 Score=77.85 Aligned_cols=49 Identities=10% Similarity=-0.033 Sum_probs=43.6
Q ss_pred CCcccccccccccccCCceeEeCCCC-CccchhhHHHHhcCCCCCccccCCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECK-HCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~-H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
.+...|+||++.|.+ .++++ || |.|+..||..||..+.+||+||.++..
T Consensus 20 p~~~~CpI~~~~m~d---PV~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCD---PVVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccC---CeECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 457899999999977 46678 99 999999999999988999999998864
No 54
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.38 E-value=1.1e-13 Score=75.16 Aligned_cols=50 Identities=20% Similarity=0.369 Sum_probs=41.3
Q ss_pred CCcccccccccccccCCceeEe--CCCCCc-cchhhHHHHhcCCCCCccccCCCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCI--PECKHC-FHAECIDEWPRLNDKCPVCINSATPV 98 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~l--p~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 98 (105)
.....|.||++.+.+ ...+ | |||. ||..|+..|...+..||+||.++..+
T Consensus 5 ~~~~~C~IC~~~~~~---~~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~ 57 (63)
T 2vje_B 5 NLLKPCSLCEKRPRD---GNIIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQLV 57 (63)
T ss_dssp GGGSBCTTTSSSBSC---EEEEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCCEE
T ss_pred CcCCCCcccCCcCCC---eEEEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhhce
Confidence 346799999998654 2334 8 9999 99999999998889999999998654
No 55
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.36 E-value=1.4e-13 Score=85.78 Aligned_cols=48 Identities=17% Similarity=0.414 Sum_probs=40.8
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCC-CCccccCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLND-KCPVCINSAT 96 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~ 96 (105)
.+...|+||++.|.+. +.++ |||.||..||..|+.... .||+||.++.
T Consensus 29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccc
Confidence 4578999999998764 5567 999999999999998654 8999999763
No 56
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.34 E-value=3.2e-13 Score=71.67 Aligned_cols=47 Identities=23% Similarity=0.514 Sum_probs=39.1
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATPV 98 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 98 (105)
.+...|+||++.|.+ .+.++ |||.||..||..| ...||+||..+...
T Consensus 4 ~~~~~C~IC~~~~~~---p~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC---PKLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50 (56)
T ss_dssp CCCSSCSSSCSSCBC---CSCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred ccCCCceEeCCccCC---eEEcC-CCCcccHHHHccC---CCCCCcCCcEeecC
Confidence 457899999999976 36678 9999999999874 67899999987653
No 57
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.33 E-value=2.5e-13 Score=82.05 Aligned_cols=45 Identities=29% Similarity=0.704 Sum_probs=38.8
Q ss_pred CcccccccccccccCCceeEe-CCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 46 NSSACSICLSEYLSQETIKCI-PECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~l-p~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
+...|+||++.|.+. +.+ + |||.||..||..|+. ..||+||..+.
T Consensus 21 ~~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 368999999998663 455 7 999999999999988 88999999874
No 58
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=99.31 E-value=2.8e-13 Score=94.61 Aligned_cols=60 Identities=23% Similarity=0.533 Sum_probs=45.0
Q ss_pred CCCcccccccccccccCCce----eEeCCCCCccchhhHHHHhcCC-----------CCCccccCCCCCCCCcCC
Q 044807 44 GPNSSACSICLSEYLSQETI----KCIPECKHCFHAECIDEWPRLN-----------DKCPVCINSATPVHADYV 103 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~----~~lp~C~H~Fh~~Ci~~wl~~~-----------~~CP~Cr~~~~~~~~~~~ 103 (105)
+++..+|+||++.+.++..+ ...+.|+|.||..||.+||... ++||+||.++....+..+
T Consensus 305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~sf~~ll 379 (381)
T 3k1l_B 305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTSFAALL 379 (381)
T ss_dssp CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGGGGGGS
T ss_pred ccCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCccHHHHh
Confidence 45678999999998873322 1123499999999999999642 469999999887655443
No 59
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=3.3e-12 Score=71.47 Aligned_cols=48 Identities=29% Similarity=0.734 Sum_probs=39.1
Q ss_pred cccccccccccccCCceeEeCCCCCc-cchhhHHHHhcCCCCCccccCCCCCCCCcC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHC-FHAECIDEWPRLNDKCPVCINSATPVHADY 102 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 102 (105)
...|+||++.+.+ ++.+| |||. ||..|+.. ...||+||..+.....-|
T Consensus 25 ~~~C~IC~~~~~~---~~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~~~~i~ 73 (75)
T 2ecg_A 25 EKLCKICMDRNIA---IVFVP-CGHLVTCKQCAEA----VDKCPMCYTVITFKQKIF 73 (75)
T ss_dssp HHSCSSSCSSCCC---BCCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCCCCBCC
T ss_pred CCCCCcCCCCCCC---EEEec-CCCHHHHHHHhhC----CCCCccCCceecCcEEEe
Confidence 5689999999765 56678 9999 99999964 378999999987755444
No 60
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.25 E-value=2.1e-12 Score=82.44 Aligned_cols=50 Identities=30% Similarity=0.454 Sum_probs=42.3
Q ss_pred CCCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCC-CCCccccCCCCC
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLN-DKCPVCINSATP 97 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~-~~CP~Cr~~~~~ 97 (105)
..+...|+||++.|.++ +.++ |||.||..||..|+... .+||+||..+..
T Consensus 15 ~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 35678999999998764 5577 99999999999999764 499999998865
No 61
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=9.1e-12 Score=68.55 Aligned_cols=51 Identities=24% Similarity=0.576 Sum_probs=41.0
Q ss_pred CCCcccccccccccccCCceeEeCCCCCc-cchhhHHHHhcCCCCCccccCCCCCCCCcC
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPECKHC-FHAECIDEWPRLNDKCPVCINSATPVHADY 102 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~~~ 102 (105)
..+...|.||++.+.+ ++.+| |||. ||..|+.. ...||+||..+.....-|
T Consensus 12 ~~~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~~~~i~ 63 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQESFALS 63 (68)
T ss_dssp CCCSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCCEECCC
T ss_pred CCCCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhceEEee
Confidence 3457899999998754 67788 9999 99999984 478999999987654433
No 62
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.21 E-value=9.4e-12 Score=84.23 Aligned_cols=50 Identities=16% Similarity=0.093 Sum_probs=42.6
Q ss_pred CCCcccccccccccccCCceeEeCCCCCccchhhHHHHhcC-CCCCccccCCCCC
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL-NDKCPVCINSATP 97 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 97 (105)
......|+||++.|.+ .++++ |||+||..||..|+.. ..+||+||.++..
T Consensus 205 ~~~~~~c~i~~~~~~d---Pv~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 205 IPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CCSTTBCTTTCSBCSS---EEECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CCcccCCcCcCCHhcC---CeECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 4567899999999977 46788 9999999999999976 4459999998864
No 63
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.21 E-value=2.7e-12 Score=72.61 Aligned_cols=46 Identities=26% Similarity=0.666 Sum_probs=38.5
Q ss_pred cccccccccccccCCceeEeCCCCCc-cchhhHHHHhcCCCCCccccCCCCCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHC-FHAECIDEWPRLNDKCPVCINSATPVHA 100 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 100 (105)
...|+||++.+.+ ++.+| |||. ||..|+..| ..||+||..+.....
T Consensus 18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~ 64 (79)
T 2yho_A 18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQL----QSCPVCRSRVEHVQH 64 (79)
T ss_dssp HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTC----SBCTTTCCBCCEEEE
T ss_pred CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhc----CcCCCCCchhhCeEE
Confidence 5689999998755 67788 9999 999999877 399999999876543
No 64
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=6.4e-12 Score=73.19 Aligned_cols=47 Identities=19% Similarity=0.361 Sum_probs=38.5
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCC------CCCcc--ccCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLN------DKCPV--CINS 94 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~------~~CP~--Cr~~ 94 (105)
.....|+||++.|.+ .++++.|||.|+..||..||..+ .+||+ |+..
T Consensus 5 ~~~~~CPI~~~~~~d---PV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 5 SSGFTCPITKEEMKK---PVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SSCCBCTTTCSBCSS---EEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred CcEeECcCcCchhcC---CEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 457899999999976 45563399999999999999753 48999 9865
No 65
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=1.2e-11 Score=71.90 Aligned_cols=49 Identities=29% Similarity=0.706 Sum_probs=39.3
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcC--------CCCCcc--ccCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL--------NDKCPV--CINS 94 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~--------~~~CP~--Cr~~ 94 (105)
.+..+|+||++++...+.+.+.+ |||.||..|+..++.. .-.||. |+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 35679999999987665555556 9999999999999853 236999 9987
No 66
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.11 E-value=6.3e-11 Score=76.35 Aligned_cols=50 Identities=16% Similarity=0.084 Sum_probs=42.7
Q ss_pred CCCcccccccccccccCCceeEeCCCCCccchhhHHHHhcC-CCCCccccCCCCC
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL-NDKCPVCINSATP 97 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~ 97 (105)
..+...|+||++.|.+ .++++ |||.|+..||..|+.. +.+||+|+.++..
T Consensus 103 ip~~f~CPI~~elm~D---PV~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 103 IPDYLCGKISFELMRE---PCITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CCGGGBCTTTCSBCSS---EEECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CcHhhcccCccccCCC---CeECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 4678999999999977 46678 9999999999999976 3479999998764
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.08 E-value=8.5e-11 Score=63.12 Aligned_cols=48 Identities=23% Similarity=0.548 Sum_probs=37.4
Q ss_pred CCcccccccccccccCCceeEeCCCC--C---ccchhhHHHHhcC--CCCCccccCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECK--H---CFHAECIDEWPRL--NDKCPVCINSAT 96 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~--H---~Fh~~Ci~~wl~~--~~~CP~Cr~~~~ 96 (105)
.+...|.||+++.. +.. ++| |. + .||..||.+|+.. +.+||+|+.++.
T Consensus 4 ~~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 46789999999742 333 467 75 3 8999999999964 678999999865
No 68
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=99.02 E-value=6e-11 Score=83.37 Aligned_cols=46 Identities=28% Similarity=0.730 Sum_probs=39.4
Q ss_pred CcccccccccccccCCceeEeCCCCCc-cchhhHHHHhcCCCCCccccCCCCCCC
Q 044807 46 NSSACSICLSEYLSQETIKCIPECKHC-FHAECIDEWPRLNDKCPVCINSATPVH 99 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 99 (105)
++..|+||++.+.+ ++.+| |||. ||..|+..| ..||+||..+....
T Consensus 294 ~~~~C~IC~~~~~~---~v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~~~~ 340 (345)
T 3t6p_A 294 EERTCKVCMDKEVS---VVFIP-CGHLVVCQECAPSL----RKCPICRGIIKGTV 340 (345)
T ss_dssp TTCBCTTTSSSBCC---EEEET-TCCEEECTTTGGGC----SBCTTTCCBCCEEE
T ss_pred CCCCCCccCCcCCc---eEEcC-CCChhHhHHHHhcC----CcCCCCCCCccCeE
Confidence 35799999999865 56778 9999 999999988 78999999987643
No 69
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.99 E-value=1.4e-10 Score=78.43 Aligned_cols=50 Identities=20% Similarity=0.454 Sum_probs=40.4
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCC--CCCcc--ccCCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLN--DKCPV--CINSATP 97 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~--~~CP~--Cr~~~~~ 97 (105)
.....|+||++.|.++ |..+. |||.|++.||..|+..+ .+||+ |+..+..
T Consensus 179 ~~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 179 KIELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp BCCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred ceeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 4568999999999764 44446 99999999999999764 46999 9987643
No 70
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.88 E-value=7.2e-10 Score=59.64 Aligned_cols=48 Identities=8% Similarity=0.102 Sum_probs=40.9
Q ss_pred cccccccccccccCCceeEe-CCCCCccchhhHHHHhcCCCCCccccCCCCCC
Q 044807 47 SSACSICLSEYLSQETIKCI-PECKHCFHAECIDEWPRLNDKCPVCINSATPV 98 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~l-p~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 98 (105)
...|+|+++.+.+. +++ + +||.|.+.||.+||..+.+||+.+.++...
T Consensus 3 ~~~CpIs~~~m~dP---V~~~~-sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRRP---VLSPK-SRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSSE---EEETT-TTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCCC---EEeCC-CCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 46899999999763 556 6 999999999999999888999999988653
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=98.71 E-value=8.8e-09 Score=59.97 Aligned_cols=48 Identities=25% Similarity=0.524 Sum_probs=37.9
Q ss_pred cccccccccccCCceeEeCCCCCccchhhHHHHhc-CCCCCccccCCCCCCC
Q 044807 49 ACSICLSEYLSQETIKCIPECKHCFHAECIDEWPR-LNDKCPVCINSATPVH 99 (105)
Q Consensus 49 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~~~~ 99 (105)
.|.+|--.+.. ..+.+| |+|.||.+|+..|.+ ..++||.|+.++..++
T Consensus 3 fC~~C~~Pi~i--ygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQRIE 51 (101)
T ss_dssp BCTTTCSBCSE--EEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEE
T ss_pred ecCccCCCeEE--Eeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeeeeE
Confidence 46777666533 356788 999999999999985 4788999999987654
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=98.56 E-value=1e-07 Score=63.87 Aligned_cols=55 Identities=22% Similarity=0.497 Sum_probs=42.9
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCC--CCCccccCCCCCCCCcC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLN--DKCPVCINSATPVHADY 102 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~--~~CP~Cr~~~~~~~~~~ 102 (105)
+....|.||.+.+..+ ..... |+|.||..|+..|++.+ ..||.|+........+.
T Consensus 178 ~~i~~C~iC~~iv~~g--~~C~~-C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~~ 234 (238)
T 3nw0_A 178 DAVKICNICHSLLIQG--QSCET-CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKV 234 (238)
T ss_dssp TTCCBCTTTCSBCSSC--EECSS-SCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCCC
T ss_pred CCCCcCcchhhHHhCC--cccCc-cChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCC
Confidence 3578999999988765 44444 99999999999999764 48999999876544433
No 73
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=97.34 E-value=0.00012 Score=42.32 Aligned_cols=36 Identities=19% Similarity=0.657 Sum_probs=27.0
Q ss_pred CcccccccccccccCCceeEeCCCCCccchhhHHH-Hh
Q 044807 46 NSSACSICLSEYLSQETIKCIPECKHCFHAECIDE-WP 82 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~-wl 82 (105)
++..|.||++.+........+. |+|.||..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHHhc
Confidence 3578999998653333344477 999999999998 53
No 74
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=96.75 E-value=0.0023 Score=34.45 Aligned_cols=49 Identities=22% Similarity=0.624 Sum_probs=35.1
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCC----CCccccCCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLND----KCPVCINSATP 97 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~----~CP~Cr~~~~~ 97 (105)
.....|.||.+. ++.+..- .|...||..|+...|.... .||.|......
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd-~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p 62 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCT-HCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTP 62 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECS-SSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCC
T ss_pred CCCCCcCCCCCC---CeEEECC-CCCCceecccCCCccCcCCCCCEECccccCCCcc
Confidence 346789999753 3334444 4999999999998886532 59999876544
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.71 E-value=0.0015 Score=37.48 Aligned_cols=48 Identities=19% Similarity=0.567 Sum_probs=38.7
Q ss_pred CCCcccccccccccccCCceeEeCCC-CCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPEC-KHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C-~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
.-+-..|..|+-.... . +. | .|.+|..|+...|.....||+|..+|..
T Consensus 25 ~~G~~nCKsCWf~~k~---L--V~-C~dHYLCl~CLtlmL~~SdrCpIC~~pLPt 73 (99)
T 2ko5_A 25 HLGPQFCKSCWFENKG---L--VE-CNNHYLCLNCLTLLLSVSNRCPICKMPLPT 73 (99)
T ss_dssp CSCCCCCCSSCSCCSS---E--EE-CSSCEEEHHHHHHTCSSSSEETTTTEECCC
T ss_pred ccCcccChhhccccCC---e--ee-ecchhhHHHHHHHHHhhccCCcccCCcCCc
Confidence 3467899999987532 2 22 7 5999999999999999999999998754
No 76
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=94.73 E-value=0.018 Score=28.95 Aligned_cols=44 Identities=27% Similarity=0.620 Sum_probs=28.6
Q ss_pred cccccccccccCCceeEeCCCCCccchhhHHHHhcC----CCCCccccC
Q 044807 49 ACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL----NDKCPVCIN 93 (105)
Q Consensus 49 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~ 93 (105)
.|.||...-..++.+..- .|...||..|+.+=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd-~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCD-ECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECT-TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECC-CCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588888654333334444 49999999999764433 224888864
No 77
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=94.55 E-value=0.025 Score=29.71 Aligned_cols=47 Identities=26% Similarity=0.609 Sum_probs=32.6
Q ss_pred CCCcccccccccccccCCceeEeCCCCCccchhhHHHHhcC----CCCCccccCC
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL----NDKCPVCINS 94 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 94 (105)
...+..|.||... ++.+..- .|.-.||..|+..-+.. .-.||.|...
T Consensus 8 ~~~~~~C~vC~~~---g~ll~CD-~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 8 TDHQDYCEVCQQG---GEIILCD-TCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SCCCSSCTTTSCC---SSEEECS-SSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCCccCCCC---CcEEECC-CCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 3557889999873 3334434 48899999999875543 2359999653
No 78
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=94.51 E-value=0.01 Score=31.40 Aligned_cols=50 Identities=32% Similarity=0.700 Sum_probs=33.8
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhc-----CCCCCccccCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPR-----LNDKCPVCINS 94 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~-----~~~~CP~Cr~~ 94 (105)
.+...|+||...+.+...++.-..|..-||..|+.--.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 456789999988754444443334888999999864321 34569999754
No 79
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=93.74 E-value=0.026 Score=33.07 Aligned_cols=38 Identities=21% Similarity=0.507 Sum_probs=27.3
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhc
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPR 83 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~ 83 (105)
..+..|.||.+.-...+.+.... |+..||..|+...+.
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~-C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTT-CGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSS-SCCEECTTTTTCCCC
T ss_pred CCCCCCcCCCCCCCCcCCeECCC-CCCCcChHHhCCccc
Confidence 45789999987643223355444 999999999987764
No 80
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=93.71 E-value=0.021 Score=30.02 Aligned_cols=47 Identities=23% Similarity=0.556 Sum_probs=32.2
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcC----CCCCccccCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL----NDKCPVCINSA 95 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~ 95 (105)
..+..|.||.+. ++.+..-. |...||..|+..-+.. .-.||.|+...
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~-C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDG---GELLCCDT-CPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCC---SSCBCCSS-SCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCC---CCEEEcCC-CCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 456789999863 33344444 8999999999865543 22599997653
No 81
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=93.64 E-value=0.071 Score=30.19 Aligned_cols=48 Identities=21% Similarity=0.592 Sum_probs=33.6
Q ss_pred CCCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCC----CCCccccCCC
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLN----DKCPVCINSA 95 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~~ 95 (105)
...+..|.+|... ++.+..- .|.-.||..|+.+=+... -.||.|+...
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD-~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCN-QCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECT-TSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCCCcCcCcCCC---CCEEECC-CCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 4567899999974 3334433 488999999998766542 2599998653
No 82
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=93.62 E-value=0.022 Score=36.25 Aligned_cols=46 Identities=24% Similarity=0.507 Sum_probs=32.6
Q ss_pred CcccccccccccccCCceeEeCCCCCccchhhHHHHhcCC----CCCccccCCC
Q 044807 46 NSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLN----DKCPVCINSA 95 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~~ 95 (105)
.+..|.+|.+. ++.+..- .|.-.||..|+.+-+... -.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd-~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCE-KCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECS-SSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecC-CCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 46789999854 4434444 499999999998766542 3599998754
No 83
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=92.76 E-value=0.21 Score=27.82 Aligned_cols=40 Identities=20% Similarity=0.388 Sum_probs=30.4
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL 84 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~ 84 (105)
.....|.+|.+.+++..-|..-..=+|.||..|-...+++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 4568999999999876656422223799999999998864
No 84
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.71 E-value=0.014 Score=30.04 Aligned_cols=45 Identities=24% Similarity=0.660 Sum_probs=30.4
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCC----CCCccccC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLN----DKCPVCIN 93 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~ 93 (105)
..+..|.||... ++.+..- .|...||..|+.+-+... -.||.|..
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd-~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECS-SSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcC-CCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456789999874 3334444 499999999998655432 24877753
No 85
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=92.63 E-value=0.11 Score=27.68 Aligned_cols=35 Identities=23% Similarity=0.505 Sum_probs=24.9
Q ss_pred CCcccccccccccccCCceeEeC-CCCCccchhhHH
Q 044807 45 PNSSACSICLSEYLSQETIKCIP-ECKHCFHAECID 79 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp-~C~H~Fh~~Ci~ 79 (105)
.....|++|...+.+...++.-. .|.--||..|+.
T Consensus 6 ~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 6 DPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ---CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 45679999999887665555444 588889999974
No 86
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=92.52 E-value=0.13 Score=40.68 Aligned_cols=50 Identities=8% Similarity=-0.019 Sum_probs=42.9
Q ss_pred CCCcccccccccccccCCceeEeCCCC-CccchhhHHHHhcCCCCCccccCCCCC
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPECK-HCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C~-H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
..+...|+|=++.+.+ .+++| -| +.|-+..|.+||..+.+||+=|.++..
T Consensus 888 iP~~F~cPIs~~lM~D---PVilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKD---PVILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp SCGGGBCTTTCSBCSS---EEECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CcHHhCCcchhhHHhC---CeEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 4567899999999877 46777 77 689999999999999999999988864
No 87
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=92.44 E-value=0.049 Score=29.60 Aligned_cols=51 Identities=18% Similarity=0.367 Sum_probs=34.0
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcC----CCCCccccCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL----NDKCPVCINSAT 96 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~~ 96 (105)
.+...|.||.... +++.++.-..|.--||..|+..-+.. .-.||.|+..+.
T Consensus 16 ~~~~~C~~C~~~~-~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 16 NQIWICPGCNKPD-DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp CEEECBTTTTBCC-SSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCCcCCCCCCCCC-CCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 4456799998765 34334433349999999999765432 345999976543
No 88
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=92.01 E-value=0.034 Score=29.61 Aligned_cols=46 Identities=28% Similarity=0.694 Sum_probs=31.8
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcC----CCCCccccCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL----NDKCPVCINS 94 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 94 (105)
..+..|.||.+. ++.+..- .|.-.||..|+.+-+.. .-.||.|...
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD-~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCD-GCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECS-SCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCccCCCC---CCEEEcC-CCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 457899999864 3444444 48999999999865543 2249999653
No 89
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=91.86 E-value=0.078 Score=33.96 Aligned_cols=50 Identities=16% Similarity=0.408 Sum_probs=34.3
Q ss_pred cccccccccccccCCc---eeEeCCCCCccchhhHHHH------hc-----CCCCCccccCCCC
Q 044807 47 SSACSICLSEYLSQET---IKCIPECKHCFHAECIDEW------PR-----LNDKCPVCINSAT 96 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~---~~~lp~C~H~Fh~~Ci~~w------l~-----~~~~CP~Cr~~~~ 96 (105)
...|+||...+.+++. ++.-..|..-||..|+.-- +. ..-.||.|+..-.
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 3469999998877652 4444459999999996421 11 1568999987543
No 90
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=91.85 E-value=0.031 Score=29.17 Aligned_cols=45 Identities=24% Similarity=0.677 Sum_probs=31.1
Q ss_pred CcccccccccccccCCceeEeCCCCCccchhhHHHHhcC----CCCCccccCC
Q 044807 46 NSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL----NDKCPVCINS 94 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 94 (105)
.+..|.||... ++.+..- .|.-.||..|+.+-+.. .-.||.|...
T Consensus 4 ~~~~C~vC~~~---g~ll~Cd-~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 4 HEDFCSVCRKS---GQLLMCD-TCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CCSSCTTTCCC---SSCEECS-SSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCCcCCCCC---CcEEEcC-CCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 46789999874 3444444 49999999999865543 2248888654
No 91
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=91.81 E-value=0.054 Score=35.12 Aligned_cols=47 Identities=23% Similarity=0.554 Sum_probs=32.9
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCC----CCCccccCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLN----DKCPVCINSA 95 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~~ 95 (105)
..+..|.+|... ++ +..-..|...||..|+.+-+... -.||.|+..-
T Consensus 5 ~~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNG---GD-LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCC---EE-EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCC---Cc-eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 456789999854 23 33334489999999998776542 3599998753
No 92
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=91.78 E-value=0.29 Score=28.62 Aligned_cols=33 Identities=30% Similarity=0.673 Sum_probs=22.6
Q ss_pred Ccccccccccccc-----cC-CceeEeCCCCCccchhhHH
Q 044807 46 NSSACSICLSEYL-----SQ-ETIKCIPECKHCFHAECID 79 (105)
Q Consensus 46 ~~~~C~ICl~~~~-----~~-~~~~~lp~C~H~Fh~~Ci~ 79 (105)
....|.+|+..-. .+ +.+.... |+..||..||.
T Consensus 4 p~~~C~~C~~~~~~~~~g~~~~Ll~C~~-C~~~~H~~Cl~ 42 (112)
T 3v43_A 4 PIPICSFCLGTKEQNREKKPEELISCAD-CGNSGHPSCLK 42 (112)
T ss_dssp CCSSBTTTCCCTTCCTTSCCCCCEECTT-TCCEECHHHHT
T ss_pred cCccccccCCchhhCcCCCchhceEhhh-cCCCCCCchhc
Confidence 4678999987521 12 3344444 99999999995
No 93
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=91.54 E-value=0.072 Score=31.26 Aligned_cols=47 Identities=23% Similarity=0.458 Sum_probs=30.0
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcC----CCCCccccC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL----NDKCPVCIN 93 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~ 93 (105)
-..|.||.+.-.+.+.+..-..|...||..|+.+-|.. .=.||.|+.
T Consensus 61 C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 61 CKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp TCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CCccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 34688887643232333333349999999999765544 235888874
No 94
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=91.53 E-value=0.078 Score=30.46 Aligned_cols=47 Identities=21% Similarity=0.370 Sum_probs=31.4
Q ss_pred CcccccccccccccCCceeEeCCCCCccchhhHHHHhcC---CCCCccccCC
Q 044807 46 NSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL---NDKCPVCINS 94 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~---~~~CP~Cr~~ 94 (105)
+...| ||-.....+..|..-. |.--||..|+..=+.. .-.||.|+..
T Consensus 27 d~vrC-iC~~~~~~~~mi~Cd~-C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 27 DVTRC-ICGFTHDDGYMICCDK-CSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CBCCC-TTSCCSCSSCEEEBTT-TCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCEEe-ECCCccCCCcEEEcCC-CCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 34567 8977665555555444 9999999998653322 3469999753
No 95
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.41 E-value=0.03 Score=31.87 Aligned_cols=48 Identities=23% Similarity=0.451 Sum_probs=32.1
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcC----CCCCccccC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL----NDKCPVCIN 93 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~ 93 (105)
.+...|.||...-.....+..- .|...||..|+.+=|.. .=.||.|..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD-~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~ 65 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCD-GCDDNYHIFCLLPPLPEIPRGIWRCPKCIL 65 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECT-TTCCEECSSSSSSCCSSCCSSCCCCHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcC-CCCchhccccCCCCcccCCCCCcCCccCcC
Confidence 4567899998764333334444 49999999999754433 224999965
No 96
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=91.11 E-value=0.23 Score=27.82 Aligned_cols=35 Identities=23% Similarity=0.623 Sum_probs=22.9
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHH
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEW 81 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~w 81 (105)
..+..|.||-..- ..+....- .|+-.||..|+.+-
T Consensus 13 ~~D~~C~VC~~~t-~~~l~pCR-vC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWT-AESLFPCR-VCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCC-SSCCSSCS-SSSSCCCHHHHHHH
T ss_pred CCCcccCcccccc-ccceeccc-cccccccHhhcccc
Confidence 4578999986322 22211111 28999999999996
No 97
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=90.95 E-value=0.058 Score=30.43 Aligned_cols=53 Identities=23% Similarity=0.387 Sum_probs=33.7
Q ss_pred CCccccccccccc-ccCCceeEeCCCCCccchhhHHHHhc--CCCCCccccCCCCC
Q 044807 45 PNSSACSICLSEY-LSQETIKCIPECKHCFHAECIDEWPR--LNDKCPVCINSATP 97 (105)
Q Consensus 45 ~~~~~C~ICl~~~-~~~~~~~~lp~C~H~Fh~~Ci~~wl~--~~~~CP~Cr~~~~~ 97 (105)
.++..|.||...- .+.+.++.-..|.-.||..|+..-+. ..-.||.|......
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~ 78 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTS
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccch
Confidence 4578999998753 12223444345888999999975331 13359999765443
No 98
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=90.36 E-value=0.15 Score=31.07 Aligned_cols=35 Identities=20% Similarity=0.477 Sum_probs=25.5
Q ss_pred CCCcccccccccccc-c-CCceeEeCCCCCccchhhHH
Q 044807 44 GPNSSACSICLSEYL-S-QETIKCIPECKHCFHAECID 79 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~-~-~~~~~~lp~C~H~Fh~~Ci~ 79 (105)
..++..|.+|...|. . +....... |.|.+|..|-.
T Consensus 52 ~~~~~~C~~C~~~~g~l~~~g~~C~~-C~~~VC~~C~~ 88 (134)
T 1zbd_B 52 GDGVNRCILCGEQLGMLGSASVVCED-CKKNVCTKCGV 88 (134)
T ss_dssp SCSSSBCSSSCCBCSTTSCCEEECTT-TCCEEETTSEE
T ss_pred cCCCccccccCCCcccccCCCCCCCC-CCcccccccCC
Confidence 356889999999883 2 33344555 99999999844
No 99
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=90.04 E-value=0.14 Score=26.93 Aligned_cols=50 Identities=22% Similarity=0.491 Sum_probs=32.8
Q ss_pred CCccccccccccccc-CCceeEeCCCCCccchhhHHHHhc-------CCCCCccccCC
Q 044807 45 PNSSACSICLSEYLS-QETIKCIPECKHCFHAECIDEWPR-------LNDKCPVCINS 94 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~-~~~~~~lp~C~H~Fh~~Ci~~wl~-------~~~~CP~Cr~~ 94 (105)
.++..|.||...... ...++.-..|.-.||..|+..-+. ..-.||.|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 457899999976432 233444345999999999876432 23358888654
No 100
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=89.27 E-value=0.36 Score=26.64 Aligned_cols=37 Identities=19% Similarity=0.442 Sum_probs=26.0
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHH
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEW 81 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~w 81 (105)
.+...|.+|...|.....-..--.||.+||..|....
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCEE
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhCCe
Confidence 4567899999998754322222249999999997654
No 101
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=89.19 E-value=0.44 Score=26.01 Aligned_cols=50 Identities=20% Similarity=0.361 Sum_probs=31.7
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHh-----cCCCCCccccCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWP-----RLNDKCPVCINSA 95 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl-----~~~~~CP~Cr~~~ 95 (105)
....-| ||...+.....++.-..|..-||..|+.--. .....||.|+...
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 344566 8988765333333333488889999985321 1355799998754
No 102
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=89.04 E-value=0.44 Score=26.41 Aligned_cols=38 Identities=13% Similarity=0.337 Sum_probs=26.7
Q ss_pred CCCcccccccccccccCCceeEeCCCCCccchhhHHHH
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEW 81 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~w 81 (105)
..+...|.+|...|.....-..--.||.+||..|....
T Consensus 18 d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 18 DEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 34567999999998764432222249999999997654
No 103
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=88.56 E-value=1.4 Score=24.94 Aligned_cols=51 Identities=20% Similarity=0.419 Sum_probs=36.0
Q ss_pred CCcccccccccccccC---Cc-eeEeCCCCCccchhhHHHHh-cCCCCCccccCCCC
Q 044807 45 PNSSACSICLSEYLSQ---ET-IKCIPECKHCFHAECIDEWP-RLNDKCPVCINSAT 96 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~---~~-~~~lp~C~H~Fh~~Ci~~wl-~~~~~CP~Cr~~~~ 96 (105)
.....|.||-+++-.. +. +... .|+--.|..|++-=. +.+..||.|++.+.
T Consensus 14 ~~~qiCqiCGD~VG~~~~Ge~FVAC~-eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTVEGDLFVACN-ECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSSCBCSSSCCBCCBCSSSSBCCSCS-SSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred cCCCccccccCccccCCCCCEEEeee-ccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4568999999986432 22 2223 377779999987544 45788999999875
No 104
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=88.31 E-value=0.27 Score=25.66 Aligned_cols=43 Identities=23% Similarity=0.455 Sum_probs=29.3
Q ss_pred ccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccc
Q 044807 48 SACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVC 91 (105)
Q Consensus 48 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~C 91 (105)
..|--|...|.+.. ...-+.|++.||.+|=.---+.-..||.|
T Consensus 16 ~~C~~C~~~~~~~~-~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQH-VYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSE-EECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCc-cEECCccCcCcccchhHHHHhhccCCcCC
Confidence 46999999885432 23345699999999954333445679987
No 105
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=88.16 E-value=0.38 Score=27.08 Aligned_cols=37 Identities=14% Similarity=0.345 Sum_probs=26.1
Q ss_pred CcccccccccccccCCceeEeCCCCCccchhhHHHHh
Q 044807 46 NSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWP 82 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl 82 (105)
+...|.+|...|.....-..-..||.+||..|...+.
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 4568999999987543322233499999999976553
No 106
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=88.12 E-value=0.35 Score=28.91 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=25.6
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHH
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEW 81 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~w 81 (105)
.+...|.+|...|.....-..--.||++||..|....
T Consensus 67 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 67 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp GGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred CCCCCCcCcCCccccccccccCCCCCeEEChHHhCCc
Confidence 3456899999998754332222249999999996543
No 107
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=88.12 E-value=0.081 Score=29.13 Aligned_cols=44 Identities=30% Similarity=0.557 Sum_probs=26.9
Q ss_pred cccccccccccCCceeEeCCCCCccchhhHHHHhcC----C-CCCccccC
Q 044807 49 ACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL----N-DKCPVCIN 93 (105)
Q Consensus 49 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~-~~CP~Cr~ 93 (105)
.|.||...-.. +.++.-..|...||..|+.+-|.. . =.||.|+.
T Consensus 28 ~C~vC~~~~d~-~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDP-DKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCG-GGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCC-cceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 46666554322 233333348899999999876543 1 35888865
No 108
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.90 E-value=0.5 Score=26.13 Aligned_cols=36 Identities=17% Similarity=0.439 Sum_probs=24.9
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHH
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDE 80 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~ 80 (105)
.+...|.+|...|..-..-..--.||.+||..|...
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence 456789999999865432222223999999999654
No 109
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=87.72 E-value=0.21 Score=25.15 Aligned_cols=44 Identities=20% Similarity=0.381 Sum_probs=28.2
Q ss_pred cccccccccccCCceeEeC-CCCCccchhhHHHHh----cCCCCCcccc
Q 044807 49 ACSICLSEYLSQETIKCIP-ECKHCFHAECIDEWP----RLNDKCPVCI 92 (105)
Q Consensus 49 ~C~ICl~~~~~~~~~~~lp-~C~H~Fh~~Ci~~wl----~~~~~CP~Cr 92 (105)
.|.||...+.++..++.-. .|.--||..|+.--. .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 5778888775555444433 488889999965321 2456788875
No 110
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=87.43 E-value=0.17 Score=32.40 Aligned_cols=45 Identities=22% Similarity=0.638 Sum_probs=30.8
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcC----CCCCccccCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL----NDKCPVCINSA 95 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~~ 95 (105)
+..|.+|.+. ++.+.... |.-.||..|+.+=+.. .-.||.|+...
T Consensus 2 ~~~C~~C~~~---g~ll~Cd~-C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 2 ATICRVCQKP---GDLVMCNQ-CEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CCCBTTTCCC---SSCCCCTT-TCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred CCcCccCCCC---CceeECCC-CCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 4679999864 33344444 8899999999765543 22599998653
No 111
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=87.20 E-value=0.82 Score=28.05 Aligned_cols=47 Identities=21% Similarity=0.394 Sum_probs=32.8
Q ss_pred CCCcccccccccccccCCceeEeCCCCCccchhhHHHHhc-----------CCCCCccccCC
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPR-----------LNDKCPVCINS 94 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~-----------~~~~CP~Cr~~ 94 (105)
...+..|.||.+. ++-+..- .|.-.||..||.+-+. ..=.||+|+..
T Consensus 60 Dg~~d~C~vC~~G---G~LlcCD-~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 60 DGMDEQCRWCAEG---GNLICCD-FCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp TSCBCSCSSSCCC---SSEEECS-SSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCCeecccCCC---CcEEeCC-CCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 3457899999874 2333333 4999999999997653 13359999753
No 112
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=86.99 E-value=0.56 Score=25.22 Aligned_cols=46 Identities=24% Similarity=0.543 Sum_probs=28.4
Q ss_pred CCcccccccccccccCCceeEeCC--CC-CccchhhHHHHhcC----CCCCccccCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPE--CK-HCFHAECIDEWPRL----NDKCPVCINSA 95 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~--C~-H~Fh~~Ci~~wl~~----~~~CP~Cr~~~ 95 (105)
.+..-| ||-... .++.+ .-.. |. .-||..|+. |.. .-.||.|+...
T Consensus 14 ~~~~~C-~C~~~~-~g~MI-~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVS-YGEMI-GCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCS-CSSEE-CCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCC-CCCEe-EeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 445667 898754 24333 2233 44 589999997 433 33599997653
No 113
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.63 E-value=0.16 Score=27.94 Aligned_cols=45 Identities=20% Similarity=0.482 Sum_probs=28.6
Q ss_pred ccccccccccccCCceeEeCCCCCccchhhHHHHhcC-----CCCCccccC
Q 044807 48 SACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL-----NDKCPVCIN 93 (105)
Q Consensus 48 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~ 93 (105)
..|.||...-..++.+. -..|...||..|+.+=|.. .=.||.|..
T Consensus 27 c~C~vC~~~~~~~~ll~-CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLL-CDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEE-CSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEE-cCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 47888886432333343 3349999999999864433 224888854
No 114
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=86.53 E-value=0.61 Score=26.13 Aligned_cols=37 Identities=16% Similarity=0.273 Sum_probs=25.6
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHH
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEW 81 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~w 81 (105)
.+...|.+|...|..-..-..--.||.+||..|....
T Consensus 7 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~~ 43 (88)
T 1wfk_A 7 GMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFS 43 (88)
T ss_dssp CCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCEE
T ss_pred CcCCCCcCcCCcccCccccccCCCCCCEEChhHcCCc
Confidence 4567899999998754332222239999999997653
No 115
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=86.32 E-value=0.7 Score=24.84 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=23.6
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHH
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDE 80 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~ 80 (105)
+..|.+|...|..-..-..--.||.+||..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3589999999865432222224999999999653
No 116
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=86.21 E-value=0.9 Score=24.41 Aligned_cols=50 Identities=22% Similarity=0.372 Sum_probs=31.6
Q ss_pred CCCccccccccccc-ccCCceeEeCCCCCccchhhHHHHhc--CCCCCccccC
Q 044807 44 GPNSSACSICLSEY-LSQETIKCIPECKHCFHAECIDEWPR--LNDKCPVCIN 93 (105)
Q Consensus 44 ~~~~~~C~ICl~~~-~~~~~~~~lp~C~H~Fh~~Ci~~wl~--~~~~CP~Cr~ 93 (105)
...+..|.||.+.- .+.+.++.-..|.-.||..|+..-.. ..=.||.|+.
T Consensus 13 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 13 IDEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCSSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 35678999998753 22333444445999999999875321 1224777754
No 117
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=86.01 E-value=0.18 Score=27.07 Aligned_cols=44 Identities=30% Similarity=0.533 Sum_probs=27.2
Q ss_pred cccccccccccCCceeEeCCCCCccchhhHHHHhcC-----CCCCccccC
Q 044807 49 ACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL-----NDKCPVCIN 93 (105)
Q Consensus 49 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~ 93 (105)
.|.||...-..+ .++.-..|...||..|+.+=|.. .=.||.|+.
T Consensus 20 ~C~~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGG-GEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCC-CEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 566777532222 33333448999999999865433 225888865
No 118
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=85.86 E-value=0.53 Score=27.25 Aligned_cols=49 Identities=22% Similarity=0.477 Sum_probs=32.1
Q ss_pred cccccccccccccCCceeEeC-CCCCccchhhHHHHh----------cCCCCCccccCCC
Q 044807 47 SSACSICLSEYLSQETIKCIP-ECKHCFHAECIDEWP----------RLNDKCPVCINSA 95 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp-~C~H~Fh~~Ci~~wl----------~~~~~CP~Cr~~~ 95 (105)
...|.||...+.+....+.-. .|.--||..|+.--. .....||.|+...
T Consensus 3 ~~~C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~ 62 (105)
T 2xb1_A 3 VYPCGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTK 62 (105)
T ss_dssp CCBCTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTT
T ss_pred cCCCCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcC
Confidence 468999999875544443332 488889999974211 0244699997643
No 119
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=85.80 E-value=0.69 Score=26.21 Aligned_cols=46 Identities=26% Similarity=0.641 Sum_probs=28.5
Q ss_pred CCcccccccccccccCCceeEeCC--CC-CccchhhHHHHhcC----CCCCccccCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPE--CK-HCFHAECIDEWPRL----NDKCPVCINSA 95 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~--C~-H~Fh~~Ci~~wl~~----~~~CP~Cr~~~ 95 (105)
.+..-| ||-... .++.|.. .. |. .-||..|+. |.. .-.||.|+...
T Consensus 34 ~e~~yC-iC~~~~-~g~MI~C-D~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 34 NEPTYC-LCHQVS-YGEMIGC-DNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCCBCS-TTCCBC-CSCCCCC-SCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CCCcEE-ECCCCC-CCCEeEe-cCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 345667 998864 2443332 23 44 579999987 332 34699997653
No 120
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=85.46 E-value=0.64 Score=24.77 Aligned_cols=33 Identities=27% Similarity=0.684 Sum_probs=26.1
Q ss_pred CCCcccccccccccccCCceeEeCCC-CCccchhhHHHH
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPEC-KHCFHAECIDEW 81 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C-~H~Fh~~Ci~~w 81 (105)
+.+..-|.||.++ ..++.+. | +-.||..|..+-
T Consensus 5 ~ee~pWC~ICneD----AtlrC~g-CdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 5 SSGLPWCCICNED----ATLRCAG-CDGDLYCARCFREG 38 (67)
T ss_dssp CCCCSSCTTTCSC----CCEEETT-TTSEEECSSHHHHH
T ss_pred CcCCCeeEEeCCC----CeEEecC-CCCceehHHHHHHH
Confidence 3556789999998 2367776 9 889999998775
No 121
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=85.19 E-value=0.48 Score=29.60 Aligned_cols=48 Identities=19% Similarity=0.434 Sum_probs=31.1
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHh-----cCCCCCccccC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWP-----RLNDKCPVCIN 93 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl-----~~~~~CP~Cr~ 93 (105)
.+...| ||......+..++.-..|.--||..|+.--. ...-.||.|+.
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~ 58 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQS 58 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcc
Confidence 456778 9988764444344333489999999985321 23556999975
No 122
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=84.26 E-value=0.21 Score=26.69 Aligned_cols=48 Identities=21% Similarity=0.513 Sum_probs=30.0
Q ss_pred CCCcccccccccccccCCceeEeCCCCCccchhhHHHHhc---CCCCCccccC
Q 044807 44 GPNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPR---LNDKCPVCIN 93 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~---~~~~CP~Cr~ 93 (105)
..+...| ||-........|..- .|.--||..|+.--.. ....||.|+.
T Consensus 16 ~~~~~~C-iC~~~~~~~~MIqCd-~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 16 FQGLVTC-FCMKPFAGRPMIECN-ECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTTCCCS-TTCCCCTTCCEEECT-TTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCCceEe-ECCCcCCCCCEEECC-CCCccccccccCcCcccCCCcEECCCCCC
Confidence 3456678 998766432344444 4888999999864221 2345888864
No 123
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=82.65 E-value=0.16 Score=30.36 Aligned_cols=48 Identities=17% Similarity=0.401 Sum_probs=28.2
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCcccc
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCI 92 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr 92 (105)
.....|..|-..|..-..-..--.||.+||..|..........|-.|-
T Consensus 17 ~~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~ 64 (120)
T 1y02_A 17 GLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQ 64 (120)
T ss_dssp ---CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHH
T ss_pred cccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHH
Confidence 345689999998865332222234999999999765544455565553
No 124
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=82.29 E-value=0.31 Score=22.57 Aligned_cols=15 Identities=20% Similarity=0.443 Sum_probs=11.2
Q ss_pred CcccccccccccccC
Q 044807 46 NSSACSICLSEYLSQ 60 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~ 60 (105)
+...|+||+.++...
T Consensus 4 EGFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 4 EGFICPQCMKSLGSA 18 (34)
T ss_dssp EEEECTTTCCEESSH
T ss_pred cccCCcHHHHHcCCH
Confidence 457899999887653
No 125
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=82.00 E-value=0.2 Score=29.15 Aligned_cols=44 Identities=18% Similarity=0.406 Sum_probs=27.7
Q ss_pred cccccccccccCCceeEeCCCCCccchhhHHHHhcC----CCCCccccC
Q 044807 49 ACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL----NDKCPVCIN 93 (105)
Q Consensus 49 ~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~ 93 (105)
.|.||...-.. ..+..-..|...||..|+.+=+.. .-.||.|+.
T Consensus 56 ~C~~C~~~~~~-~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~ 103 (111)
T 2ysm_A 56 VCQNCKQSGED-SKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRI 103 (111)
T ss_dssp CCTTTCCCSCC-TTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHC
T ss_pred cccccCccCCC-CCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcC
Confidence 56677665332 234443459999999999865543 234888854
No 126
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=81.61 E-value=1.5 Score=25.47 Aligned_cols=47 Identities=19% Similarity=0.439 Sum_probs=29.2
Q ss_pred CCcccccccccccccCCceeEeC-CCCCccchhhHHHHhcCC----CCCccccCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIP-ECKHCFHAECIDEWPRLN----DKCPVCINSAT 96 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp-~C~H~Fh~~Ci~~wl~~~----~~CP~Cr~~~~ 96 (105)
..+..|.+|.+. ++.+..-. .|...||..|+. |... -.||.|...+.
T Consensus 13 ~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 13 MHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 456789999842 33333330 388899999987 4432 24887765443
No 127
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=81.57 E-value=0.43 Score=31.56 Aligned_cols=45 Identities=31% Similarity=0.647 Sum_probs=26.1
Q ss_pred ccccccccccccCCceeEeCCCCCccchhhHHHHhcC-----CCCCccccC
Q 044807 48 SACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL-----NDKCPVCIN 93 (105)
Q Consensus 48 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~-----~~~CP~Cr~ 93 (105)
..|.+|...-..+..+..- .|...||..|+.+=|.. .=.||.|+.
T Consensus 175 c~C~vC~~~~~~~~lL~CD-~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 175 CACHLCGGRQDPDKQLMCD-ECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp TSCSSSCCCCC--CCEECS-SSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCCcCCCCCCCCCCeEEcC-CCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 3688887643233334434 49999999999865543 225999965
No 128
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=81.56 E-value=0.88 Score=29.57 Aligned_cols=35 Identities=17% Similarity=0.453 Sum_probs=24.8
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHH
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEW 81 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~w 81 (105)
+..|.+|...|.....-..--.||++||..|....
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCEE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCCe
Confidence 57999999998654332222349999999996543
No 129
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=81.27 E-value=0.93 Score=29.70 Aligned_cols=36 Identities=14% Similarity=0.458 Sum_probs=25.6
Q ss_pred CcccccccccccccCCceeEeCCCCCccchhhHHHH
Q 044807 46 NSSACSICLSEYLSQETIKCIPECKHCFHAECIDEW 81 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~w 81 (105)
++..|.+|...|..-..-..-..||.+||..|....
T Consensus 163 ~~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 163 DAEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CCSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred cCCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 356999999998754332223349999999997654
No 130
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=80.69 E-value=1.1 Score=23.32 Aligned_cols=37 Identities=22% Similarity=0.507 Sum_probs=25.3
Q ss_pred CCCccccccccc-ccccCCceeEeCCCCCccchhhHHHH
Q 044807 44 GPNSSACSICLS-EYLSQETIKCIPECKHCFHAECIDEW 81 (105)
Q Consensus 44 ~~~~~~C~ICl~-~~~~~~~~~~lp~C~H~Fh~~Ci~~w 81 (105)
.++...|.||+. .|.++-.-.... |.-.||..|-..|
T Consensus 6 ~~d~~~C~iC~KTKFADG~Gh~C~y-Ck~r~CaRCGg~v 43 (62)
T 2a20_A 6 KGDAPTCGICHKTKFADGCGHNCSY-CQTKFCARCGGRV 43 (62)
T ss_dssp SSCCCCCSSSSCSCCCSSCCEEBTT-TCCEECTTSEEEE
T ss_pred cCCcchhhhhccceeccCCCccccc-cCCeeecccCCEe
Confidence 356789999997 576664444444 6667777776555
No 131
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=79.42 E-value=2.2 Score=22.87 Aligned_cols=46 Identities=26% Similarity=0.543 Sum_probs=30.4
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHh---------cCCCCCccccCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWP---------RLNDKCPVCINS 94 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl---------~~~~~CP~Cr~~ 94 (105)
..-| ||......+..|..-. |..-||..|+.--. .....||.|+..
T Consensus 16 ~~~C-~C~~~~~~~~MI~Cd~-C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHNNRFMICCDR-CEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCCSSCEEECSS-SCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccCCCCEEEeCC-CCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 4556 8988765434444444 99899999984221 246779999754
No 132
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=79.41 E-value=1.1 Score=27.79 Aligned_cols=33 Identities=24% Similarity=0.628 Sum_probs=24.9
Q ss_pred CCcccccccccccc--cCCceeEeCCCCCccchhhH
Q 044807 45 PNSSACSICLSEYL--SQETIKCIPECKHCFHAECI 78 (105)
Q Consensus 45 ~~~~~C~ICl~~~~--~~~~~~~lp~C~H~Fh~~Ci 78 (105)
.++..|.+|...|. .+....... |.|.+|..|-
T Consensus 66 ~~~~~C~~C~~~fg~l~~~g~~C~~-C~~~VC~~C~ 100 (153)
T 2zet_C 66 LNETHCARCLQPYRLLLNSRRQCLE-CSLFVCKSCS 100 (153)
T ss_dssp GGGTBCTTTCCBGGGCSSCCEECTT-TCCEECGGGE
T ss_pred CCCccchhhcCccccccCCCCcCCC-CCchhhcccc
Confidence 35799999999753 334455555 9999999996
No 133
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=79.38 E-value=0.78 Score=26.39 Aligned_cols=11 Identities=27% Similarity=0.951 Sum_probs=10.2
Q ss_pred cchhhHHHHhc
Q 044807 73 FHAECIDEWPR 83 (105)
Q Consensus 73 Fh~~Ci~~wl~ 83 (105)
||..|+..|+.
T Consensus 42 FCRNCLskWy~ 52 (104)
T 3fyb_A 42 FCRNCLAKWLM 52 (104)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 134
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=79.23 E-value=0.79 Score=26.41 Aligned_cols=11 Identities=36% Similarity=1.135 Sum_probs=10.2
Q ss_pred cchhhHHHHhc
Q 044807 73 FHAECIDEWPR 83 (105)
Q Consensus 73 Fh~~Ci~~wl~ 83 (105)
||..|+..|+.
T Consensus 43 FCRNCLskWy~ 53 (105)
T 2o35_A 43 FCRNCLSNWYR 53 (105)
T ss_dssp CCHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999984
No 135
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=78.56 E-value=2.8 Score=25.23 Aligned_cols=46 Identities=20% Similarity=0.428 Sum_probs=30.7
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHh------c-----CCCCCccccCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWP------R-----LNDKCPVCINS 94 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl------~-----~~~~CP~Cr~~ 94 (105)
..+..|.||-+. ++ +..-..|-..||..||.+-+ + ..=.|++|+-.
T Consensus 55 g~~~~C~vC~dG---G~-LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 55 GMDEQCRWCAEG---GN-LICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp SCBSSCTTTCCC---SE-EEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCcCeecCCC---Ce-eEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 456779999975 22 33323489999999999753 1 12359999653
No 136
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=77.84 E-value=1.4 Score=22.99 Aligned_cols=41 Identities=20% Similarity=0.412 Sum_probs=25.9
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
...|..|-..+...+.++.. =+..||..|+ .|-.|...|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEY--KGSSWHETCF--------ICHRCQQPIGT 45 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEE--TTEEEETTTT--------CCSSSCCCCCS
T ss_pred CCCCccCCCcccCCceEEEE--CcCeecccCC--------cccccCCccCC
Confidence 35788888887665444332 4567777664 37777776654
No 137
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=77.42 E-value=0.26 Score=28.92 Aligned_cols=46 Identities=17% Similarity=0.502 Sum_probs=29.0
Q ss_pred ccccccccccccCCceeEeCCCCCccchhhHHHHhcC----CCCCccccCC
Q 044807 48 SACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRL----NDKCPVCINS 94 (105)
Q Consensus 48 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~----~~~CP~Cr~~ 94 (105)
..|.||...-..++.+..- .|...||..|+.+=|.. .-.||.|+..
T Consensus 59 ~~C~~C~~~~~~~~ll~Cd-~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 59 KSCILCGTSENDDQLLFCD-DCDRGYHMYCLNPPVAEPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCCTTTTCCTTTTTEEECS-SSCCEEETTTSSSCCSSCCSSCCCCHHHHHH
T ss_pred CccCcccccCCCCceEEcC-CCCccccccccCCCccCCCCCCeECccccch
Confidence 3678887754333344444 49999999999864433 2248877543
No 138
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=76.74 E-value=2.8 Score=22.65 Aligned_cols=49 Identities=18% Similarity=0.417 Sum_probs=31.7
Q ss_pred CCcccccccccccccCCceeEeC-CCCCccchhhHHHHhc---------CCCCCccccCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIP-ECKHCFHAECIDEWPR---------LNDKCPVCINS 94 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp-~C~H~Fh~~Ci~~wl~---------~~~~CP~Cr~~ 94 (105)
.....| ||-.....+..|..-. .|..-||..|+.---. ....||.|+..
T Consensus 14 ~~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~ 72 (78)
T 1wew_A 14 EIKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLT 72 (78)
T ss_dssp CCCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHC
T ss_pred CCCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcc
Confidence 345677 8988754554555440 3989999999853211 24569999754
No 139
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=76.51 E-value=0.51 Score=24.47 Aligned_cols=43 Identities=23% Similarity=0.555 Sum_probs=25.6
Q ss_pred CcccccccccccccCCceeEeCC--CC-CccchhhHHHHhcC----CCCCccccC
Q 044807 46 NSSACSICLSEYLSQETIKCIPE--CK-HCFHAECIDEWPRL----NDKCPVCIN 93 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~Fh~~Ci~~wl~~----~~~CP~Cr~ 93 (105)
+..-| ||.... .++ ++.-.. |. .-||..|+. |.. .-.||.|+.
T Consensus 9 e~~~C-~C~~~~-~g~-mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVS-YGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcC-CCC-EEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34556 898753 233 333333 43 579999997 433 335888854
No 140
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=76.44 E-value=0.61 Score=27.14 Aligned_cols=27 Identities=19% Similarity=0.445 Sum_probs=17.5
Q ss_pred CCCccchhhHHHHhcCCCCCccccCCCCCCCC
Q 044807 69 CKHCFHAECIDEWPRLNDKCPVCINSATPVHA 100 (105)
Q Consensus 69 C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~~ 100 (105)
||+.|. .-+.....||.|+.+-.....
T Consensus 73 CG~~F~-----~~~~kPsrCP~CkSe~Ie~P~ 99 (105)
T 2gmg_A 73 CGFVFK-----AEINIPSRCPKCKSEWIEEPR 99 (105)
T ss_dssp TCCBCC-----CCSSCCSSCSSSCCCCBCCCC
T ss_pred CcCeec-----ccCCCCCCCcCCCCCccCCcc
Confidence 999982 112345679999987555443
No 141
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=75.83 E-value=2.2 Score=30.25 Aligned_cols=47 Identities=30% Similarity=0.424 Sum_probs=28.6
Q ss_pred cccccccccccccCCceeEeCCCCCc--cchhhHHHHhcC--CCCCccccCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHC--FHAECIDEWPRL--NDKCPVCINSAT 96 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~--Fh~~Ci~~wl~~--~~~CP~Cr~~~~ 96 (105)
...|+|=...+..+ ++... |.|. |-..=+.....+ .-.||+|...+.
T Consensus 249 SL~CPlS~~ri~~P--vRg~~-C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKYP--SKSIN-CKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSSE--EEETT-CCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCcccccccc--CcCCc-CCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 36788766665443 55555 9998 444333333222 346999988764
No 142
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=75.60 E-value=2.2 Score=30.06 Aligned_cols=47 Identities=21% Similarity=0.362 Sum_probs=28.9
Q ss_pred ccccccccccccCCceeEeCCCCCc--cchhhHHHHhcC--CCCCccccCCCCC
Q 044807 48 SACSICLSEYLSQETIKCIPECKHC--FHAECIDEWPRL--NDKCPVCINSATP 97 (105)
Q Consensus 48 ~~C~ICl~~~~~~~~~~~lp~C~H~--Fh~~Ci~~wl~~--~~~CP~Cr~~~~~ 97 (105)
..|+|=...+..+ ++... |.|. |-..=+.....+ .-.||+|...+..
T Consensus 216 L~CPlS~~ri~~P--~Rg~~-C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 216 LMCPLGKMRLTIP--CRAVT-CTHLQCFDAALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp SBCTTTCSBCSSE--EEETT-CCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeCCCccceeccC--CcCCC-CCCCccCCHHHHHHHHhhCCCeECCCCCcccCH
Confidence 5688776666443 55555 9998 554433333333 3459999887643
No 143
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=75.31 E-value=2 Score=22.64 Aligned_cols=43 Identities=21% Similarity=0.518 Sum_probs=28.3
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
.....|.-|-..+...+.++.. -+..||..|+ .|-.|..+|..
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 51 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC--------CCTTTCCCCGG
T ss_pred CCCCCchhcCCccCCCceEEEe--CccEeccccC--------eECCCCCCCCC
Confidence 3457899998888655544322 4667887764 47777777654
No 144
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.99 E-value=1.7 Score=22.62 Aligned_cols=39 Identities=23% Similarity=0.519 Sum_probs=19.8
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSA 95 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~ 95 (105)
...|..|-..+...+.++. . =+..||..|+ .|-.|...|
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~CF--------~C~~C~~~L 43 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVV-A-LDRVFHVGCF--------VCSTCRAQL 43 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEE-C-SSSEECTTTC--------BCSSSCCBC
T ss_pred CCCCccCCCccCCCceEEE-E-CCCeEcccCC--------cccccCCcC
Confidence 3566666665544322221 1 3456666553 356666555
No 145
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=74.66 E-value=0.21 Score=27.50 Aligned_cols=14 Identities=29% Similarity=0.831 Sum_probs=12.8
Q ss_pred CCCCccchhhHHHH
Q 044807 68 ECKHCFHAECIDEW 81 (105)
Q Consensus 68 ~C~H~Fh~~Ci~~w 81 (105)
.|++.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 49999999999988
No 146
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.58 E-value=2.3 Score=22.94 Aligned_cols=41 Identities=24% Similarity=0.522 Sum_probs=28.6
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
.....|.-|-..+..++.+.. =+..||..|+ .|-.|+..|.
T Consensus 13 ~~~~~C~~C~~~I~~~~~v~a---~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 13 RGPSHCAGCKEEIKHGQSLLA---LDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SSCSCCTTTCCCCSSSCCEEE---TTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCCcCcCCeeCCCeEEEE---CCcccccccC--------CcCcCCCCcC
Confidence 446789999988876655432 4667888774 4778877765
No 147
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=74.22 E-value=1.6 Score=24.32 Aligned_cols=50 Identities=20% Similarity=0.440 Sum_probs=32.9
Q ss_pred Cccccccccccccc-CCceeEeCCCCCccchhhHHHHhc--------CCCCCccccCCC
Q 044807 46 NSSACSICLSEYLS-QETIKCIPECKHCFHAECIDEWPR--------LNDKCPVCINSA 95 (105)
Q Consensus 46 ~~~~C~ICl~~~~~-~~~~~~lp~C~H~Fh~~Ci~~wl~--------~~~~CP~Cr~~~ 95 (105)
.+..|.||...-.. ...++.-..|...||..|+.+-|. ..=.|+.|+...
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 35689999976332 233444445999999999987553 123588886543
No 148
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=74.09 E-value=1.9 Score=22.44 Aligned_cols=41 Identities=22% Similarity=0.411 Sum_probs=24.8
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
...|.-|-..+...+.++. . -+..||..|+ .|-.|..+|..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLE-Y-GGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEEC-S-TTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEE-E-CccccCcccC--------eECCCCCcCCC
Confidence 4578888887765433322 2 4667777664 36677666643
No 149
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=73.73 E-value=0.71 Score=23.86 Aligned_cols=43 Identities=26% Similarity=0.623 Sum_probs=26.2
Q ss_pred CcccccccccccccCCceeEeCC--CC-CccchhhHHHHhcC----CCCCccccC
Q 044807 46 NSSACSICLSEYLSQETIKCIPE--CK-HCFHAECIDEWPRL----NDKCPVCIN 93 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~--C~-H~Fh~~Ci~~wl~~----~~~CP~Cr~ 93 (105)
+..-| ||-... .++ ++.-.. |. .-||..|+. |.. .-.||.|+.
T Consensus 8 e~~yC-~C~~~~-~g~-mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVS-YGE-MIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCC-CCC-eeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34556 898754 343 333334 54 589999987 333 335888864
No 150
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=73.70 E-value=3.1 Score=22.42 Aligned_cols=42 Identities=24% Similarity=0.582 Sum_probs=27.7
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
.....|..|-..+...+.+. . =+..||..|+ .|-.|...|..
T Consensus 13 ~~~~~C~~C~~~I~~~e~v~--a-~~~~wH~~CF--------~C~~C~~~L~~ 54 (82)
T 2co8_A 13 GAGDLCALCGEHLYVLERLC--V-NGHFFHRSCF--------RCHTCEATLWP 54 (82)
T ss_dssp CSSCBCSSSCCBCCTTTBCC--B-TTBCCBTTTC--------BCSSSCCBCCT
T ss_pred CCCCCCcccCCCcccceEEE--E-CCCeeCCCcC--------EEcCCCCCcCC
Confidence 34578999998886655543 2 4667888774 36667666543
No 151
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=72.73 E-value=0.78 Score=23.95 Aligned_cols=43 Identities=21% Similarity=0.464 Sum_probs=25.9
Q ss_pred CcccccccccccccCCceeEeCCCC---CccchhhHHHHhcC----CCCCccccC
Q 044807 46 NSSACSICLSEYLSQETIKCIPECK---HCFHAECIDEWPRL----NDKCPVCIN 93 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~---H~Fh~~Ci~~wl~~----~~~CP~Cr~ 93 (105)
+..-| ||-... .++ ++.-..|. .-||..|+. |.. .-.||.|+.
T Consensus 10 e~~yC-~C~~~~-~g~-MI~CD~c~C~~~WfH~~Cvg--l~~~p~~~w~Cp~C~~ 59 (62)
T 2g6q_A 10 EPTYC-LCNQVS-YGE-MIGCDNEQCPIEWFHFSCVS--LTYKPKGKWYCPKCRG 59 (62)
T ss_dssp CCEET-TTTEEC-CSE-EEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHT
T ss_pred CCcEE-ECCCCC-CCC-eeeeeCCCCCcccEecccCC--cCcCCCCCEECcCccc
Confidence 34566 898753 343 33333333 789999987 322 345888864
No 152
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.59 E-value=2.3 Score=22.11 Aligned_cols=40 Identities=23% Similarity=0.421 Sum_probs=25.0
Q ss_pred ccccccccccccc--CCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 47 SSACSICLSEYLS--QETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 47 ~~~C~ICl~~~~~--~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
...|.-|-..+.. .+.++ .. -+..||..|+ .|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~-~a-~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYI-SF-EERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCE-EC-SSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceE-EE-CCcccCcccC--------EeccCCCcCC
Confidence 4678888887764 22332 22 5677887764 4777777664
No 153
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=72.44 E-value=2 Score=22.98 Aligned_cols=41 Identities=17% Similarity=0.436 Sum_probs=27.8
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
...|..|-..+...+.++. . =+..||..|+ .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~-a-~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVE-Y-KGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEE-C-SSCEEETTTC--------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEE-E-CccccccccC--------chhhCCCccCC
Confidence 4689999888876555432 2 5677888775 47778777654
No 154
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=71.21 E-value=1.9 Score=19.06 Aligned_cols=29 Identities=17% Similarity=0.461 Sum_probs=20.3
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhH
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECI 78 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci 78 (105)
...|+.|-..+...+.+. . =|..||..|+
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~--~-~g~~~Hk~CF 31 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVN--C-LDKFWHKACF 31 (31)
T ss_dssp CCBCSSSCSBCCGGGCCC--S-SSSCCCGGGC
T ss_pred CCcCCccCCEEecceeEE--E-CCeEecccCC
Confidence 357899988776665554 2 5678998873
No 155
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=70.26 E-value=2.5 Score=21.74 Aligned_cols=43 Identities=21% Similarity=0.539 Sum_probs=29.8
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
.....|.-|-..+...+.++.. =+..||..|+ .|-.|...|..
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~~--~~~~~H~~CF--------~C~~C~~~L~~ 51 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVNS--NGELYHEQCF--------VCAQCFQQFPE 51 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEEE--TTEEEETTTS--------SCTTTCCCCGG
T ss_pred cCCccchhcCccccCCceEEEe--CcCeeCcCCC--------cccCCCCCCCC
Confidence 3457899999988766554332 5667888775 47778777654
No 156
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=69.11 E-value=1.4 Score=23.37 Aligned_cols=44 Identities=11% Similarity=-0.016 Sum_probs=24.0
Q ss_pred CcccccccccccccCCceeEeCCCCCccch-hhHHHHhcCCCCCccccCC
Q 044807 46 NSSACSICLSEYLSQETIKCIPECKHCFHA-ECIDEWPRLNDKCPVCINS 94 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~-~Ci~~wl~~~~~CP~Cr~~ 94 (105)
+-..|..|-..+..+. .. .. =+..||. .|...-+ ...|-.|...
T Consensus 26 ~CF~C~~C~~~L~~~~-~~-~~-~g~~yC~~~cy~~~f--~~~C~~C~~~ 70 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGG-HA-EH-EGKPYCNHPCYSAMF--GPKGFGRGGA 70 (76)
T ss_dssp TTCBCTTTCCBCCTTT-EE-EE-TTEEEETTTHHHHHS--SCCCSSCCCS
T ss_pred CCCCccccCccCCCCc-eE-Cc-CCeEeeCHHHHHHHh--CccCCCcCCc
Confidence 3567777777665442 22 12 4566777 4765532 3446666543
No 157
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=69.02 E-value=2.4 Score=22.49 Aligned_cols=49 Identities=20% Similarity=0.286 Sum_probs=31.2
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHh----cCCCCCccccCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWP----RLNDKCPVCINS 94 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl----~~~~~CP~Cr~~ 94 (105)
.....| ||-....++..++.-..|.--||..|+.--. .....||.|+..
T Consensus 14 ~~~~~C-~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 14 NWKVDC-KCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp SSEECC-TTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred CcceEe-eCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 345678 7987765554343333488889999976431 224569998654
No 158
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=67.13 E-value=6.8 Score=24.41 Aligned_cols=36 Identities=28% Similarity=0.587 Sum_probs=24.5
Q ss_pred CCcccccccccccccCCceeEeC--CCCCccchhhHHHHhcC
Q 044807 45 PNSSACSICLSEYLSQETIKCIP--ECKHCFHAECIDEWPRL 84 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp--~C~H~Fh~~Ci~~wl~~ 84 (105)
..+.-|.||-+. ..++.-. .|...||..||..++..
T Consensus 77 G~~~yC~wC~~G----g~l~~Cdn~~C~r~FC~~CI~~nvG~ 114 (159)
T 3a1b_A 77 GYQSYCTICCGG----REVLMCGNNNCCRCFCVECVDLLVGP 114 (159)
T ss_dssp SSBSSCTTTSCC----SEEEECSSTTTCCEEEHHHHHHHTCT
T ss_pred CCcceeeEecCC----CeEEeeCCCCCCCchhHHHHHHhcCH
Confidence 446778888763 2233322 38899999999999744
No 159
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=66.70 E-value=3.1 Score=21.90 Aligned_cols=40 Identities=28% Similarity=0.556 Sum_probs=24.5
Q ss_pred ccccccccccccc--CCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 47 SSACSICLSEYLS--QETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 47 ~~~C~ICl~~~~~--~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
...|..|-..+.. ...++. . -+..||.+|+ .|-.|...|.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~-a-~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFIC-F-QDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEE-E-TTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEE-E-CCcccCcccC--------ChhhCCCcCC
Confidence 3578888887764 222322 2 5667888775 3667766654
No 160
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=65.59 E-value=3.4 Score=21.72 Aligned_cols=41 Identities=27% Similarity=0.559 Sum_probs=28.3
Q ss_pred CcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 46 NSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
....|..|-..+...+.+. . -+..||..|+ .|-.|...|..
T Consensus 8 ~~~~C~~C~~~I~~~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~ 48 (76)
T 2cu8_A 8 MASKCPKCDKTVYFAEKVS--S-LGKDWHKFCL--------KCERCSKTLTP 48 (76)
T ss_dssp CCCBCTTTCCBCCTTTEEE--E-TTEEEETTTC--------BCSSSCCBCCT
T ss_pred CCCCCcCCCCEeECCeEEE--E-CCeEeeCCCC--------CCCCCCCccCC
Confidence 3568999988887665443 2 5677887764 47788777754
No 161
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=64.00 E-value=5.6 Score=21.08 Aligned_cols=39 Identities=18% Similarity=0.358 Sum_probs=25.3
Q ss_pred CcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 46 NSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
....|.-|-..+.. + + +.. -+..||..|+ .|-.|+..|.
T Consensus 14 ~~~~C~~C~~~I~~-~-~-~~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVG-V-F-VKL-RDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCS-S-C-EEC-SSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccC-c-E-EEE-CcceeCcCcC--------eeCCCCCCCC
Confidence 35688888887764 2 2 222 5677888775 3777776653
No 162
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=62.69 E-value=1.6 Score=30.87 Aligned_cols=50 Identities=16% Similarity=0.368 Sum_probs=0.0
Q ss_pred CCcccccccccccccCCc-eeEeCCCCCccchhhHHHHhcC-------CCCCccccCCC
Q 044807 45 PNSSACSICLSEYLSQET-IKCIPECKHCFHAECIDEWPRL-------NDKCPVCINSA 95 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~-~~~lp~C~H~Fh~~Ci~~wl~~-------~~~CP~Cr~~~ 95 (105)
.+...|.+|-..|..... ...-. ||++||..|....+.. ...|-.|-..+
T Consensus 373 ~~~~~c~~c~~~f~~~~r~h~Cr~-Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 373 THVMMCMNCGCDFSLTLRRHHCHA-CGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp -----------------------------------------------------------
T ss_pred ccCCcCCCcCCCCCCcchhhhccc-CcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 345789999998864332 22333 9999999998766411 33476665443
No 163
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=60.12 E-value=11 Score=20.49 Aligned_cols=39 Identities=23% Similarity=0.668 Sum_probs=21.4
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
...|.-|-..+...+.+ .. -+..||..|+ .|-.|...|.
T Consensus 15 ~~~C~~C~~~I~~~~~v--~a-~~~~~H~~CF--------~C~~C~~~L~ 53 (91)
T 2d8y_A 15 RETCVECQKTVYPMERL--LA-NQQVFHISCF--------RCSYCNNKLS 53 (91)
T ss_dssp SCBCTTTCCBCCTTSEE--EC-SSSEEETTTC--------BCTTTCCBCC
T ss_pred CCcCccCCCccCCceeE--EE-CCCEECCCCC--------eeCCCCCCCC
Confidence 45677777766554433 22 4556666653 2555555544
No 164
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=59.55 E-value=8.9 Score=27.29 Aligned_cols=36 Identities=36% Similarity=0.827 Sum_probs=23.4
Q ss_pred CCcccccccccccccCCceeEe-CCCCCccchhhHHHHhc
Q 044807 45 PNSSACSICLSEYLSQETIKCI-PECKHCFHAECIDEWPR 83 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~l-p~C~H~Fh~~Ci~~wl~ 83 (105)
..+.-|.||-+. ++-+..- +.|...||..||..++.
T Consensus 91 G~~~yCr~C~~G---g~l~~Cdn~~C~r~FC~~Ci~~n~g 127 (386)
T 2pv0_B 91 GYQSYCSICCSG---ETLLICGNPDCTRCYCFECVDSLVG 127 (386)
T ss_dssp SSBCSCTTTCCC---SSCEECCSTTCCCEECHHHHHHHTC
T ss_pred CCcccceEcCCC---CeEEEeCCCCCCcchHHHHHHHhcC
Confidence 345677777653 2223333 13889999999999983
No 165
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=59.18 E-value=3 Score=24.33 Aligned_cols=34 Identities=15% Similarity=0.293 Sum_probs=16.3
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHh
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWP 82 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl 82 (105)
-..|..|-..|..++.... . =+..||..|....+
T Consensus 36 CF~C~~C~~~L~~g~~f~~-~-~g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 36 CFKCAACQKHFSVGDRYLL-I-NSDIVCEQDIYEWT 69 (123)
T ss_dssp TCBCTTTCCBCCTTCEEEE-C-SSSEEEGGGHHHHH
T ss_pred cCccccCCCCCCCCCcEEe-e-CCEEEcHHHhHHHh
Confidence 4555566555533332221 1 34556666655544
No 166
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=59.03 E-value=0.66 Score=25.73 Aligned_cols=32 Identities=22% Similarity=0.762 Sum_probs=19.5
Q ss_pred cccccccccc--CCceeEeCCCCCccchhhHHHH
Q 044807 50 CSICLSEYLS--QETIKCIPECKHCFHAECIDEW 81 (105)
Q Consensus 50 C~ICl~~~~~--~~~~~~lp~C~H~Fh~~Ci~~w 81 (105)
|+-|-..+.. ....+.-+.|++.||..|-..|
T Consensus 28 CP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp CSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred CcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 6655443322 1122334459999999998888
No 167
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=58.17 E-value=13 Score=21.46 Aligned_cols=49 Identities=6% Similarity=-0.098 Sum_probs=32.9
Q ss_pred ccccccccccccc-CCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 47 SSACSICLSEYLS-QETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 47 ~~~C~ICl~~~~~-~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
-..|..|-..+.+ +.... .. =+..||..|...-+.....|-.|...|..
T Consensus 32 CF~C~~C~~~L~~~~~~~~-~~-~g~~yC~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSY-TK-SGMILCRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HHCCSSSCCCTTTSEECCE-EE-TTEEECHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCCcCCCCCcccccCCeEE-EE-CCeeecHHHHHHHcCCCCccccCCCCcCc
Confidence 4677777777642 11222 22 56778999988877666689999888774
No 168
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=58.09 E-value=2.1 Score=18.80 Aligned_cols=11 Identities=36% Similarity=0.637 Sum_probs=7.0
Q ss_pred CCCccccCCCC
Q 044807 86 DKCPVCINSAT 96 (105)
Q Consensus 86 ~~CP~Cr~~~~ 96 (105)
..||+|+..+.
T Consensus 4 ~~CpvCk~q~P 14 (28)
T 2jvx_A 4 FCCPKCQYQAP 14 (28)
T ss_dssp EECTTSSCEES
T ss_pred ccCccccccCc
Confidence 35777776544
No 169
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=56.46 E-value=5 Score=21.34 Aligned_cols=40 Identities=20% Similarity=0.428 Sum_probs=25.0
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
...|..|-..+...+.++.. =+..||..|+ .|-.|..+|.
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~ 54 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFY--EDRHFHEGCF--------RCCRCQRSLA 54 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCC--SSCCCBTTTS--------BCTTTCCBCS
T ss_pred CCcCccCCCccccCcEEEEe--CCccccccCC--------eecCCCCccC
Confidence 35788888887643333221 4667887764 3777777665
No 170
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=55.53 E-value=6.8 Score=21.65 Aligned_cols=46 Identities=17% Similarity=0.400 Sum_probs=27.8
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
-..|..|-..+... ... .. =|..||..|..+ .....|..|...|..
T Consensus 33 CF~C~~C~~~L~~~-~~~-~~-~g~~yC~~cy~~--~~~~~C~~C~~~I~~ 78 (101)
T 2cup_A 33 CFRCAKCLHPLANE-TFV-AK-DNKILCNKCTTR--EDSPKCKGCFKAIVA 78 (101)
T ss_dssp TCCCSSSCCCTTSS-CCE-EE-TTEEECHHHHTT--CCCCBCSSSCCBCCS
T ss_pred CCcccccCCCCCcC-eeE-Cc-CCEEEChhHhhh--hcCCccccCCCcccc
Confidence 46777777776432 221 11 456778777643 235679999888863
No 171
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.71 E-value=7.5 Score=19.90 Aligned_cols=39 Identities=28% Similarity=0.674 Sum_probs=21.9
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
...|..|-..+.. +.+. . -+..||.+|+ .|-.|+..|..
T Consensus 5 ~~~C~~C~~~I~~-~~~~--a-~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIG-RVIK--A-MNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCS-CCEE--E-TTEEECTTTS--------BCSSSCCBCSS
T ss_pred CCcCccCCCEecc-eEEE--E-CcccccccCC--------EeCCCCCcCCC
Confidence 4567777776652 2221 1 4566776664 36666666554
No 172
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=54.19 E-value=3.1 Score=22.21 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=12.3
Q ss_pred HHhcCCCCCccccCCCC
Q 044807 80 EWPRLNDKCPVCINSAT 96 (105)
Q Consensus 80 ~wl~~~~~CP~Cr~~~~ 96 (105)
.||...-.||.|+.++.
T Consensus 3 ~~LLeiL~CP~ck~~L~ 19 (69)
T 2pk7_A 3 TKLLDILACPICKGPLK 19 (69)
T ss_dssp CCGGGTCCCTTTCCCCE
T ss_pred hHHHhheeCCCCCCcCe
Confidence 35555667999998875
No 173
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=52.87 E-value=2.9 Score=22.22 Aligned_cols=17 Identities=12% Similarity=-0.107 Sum_probs=12.8
Q ss_pred HHhcCCCCCccccCCCC
Q 044807 80 EWPRLNDKCPVCINSAT 96 (105)
Q Consensus 80 ~wl~~~~~CP~Cr~~~~ 96 (105)
.||...-.||+|+.++.
T Consensus 5 ~~LLeiL~CP~ck~~L~ 21 (67)
T 2jny_A 5 PQLLEVLACPKDKGPLR 21 (67)
T ss_dssp GGGTCCCBCTTTCCBCE
T ss_pred HHHHHHhCCCCCCCcCe
Confidence 45666778999998765
No 174
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=52.39 E-value=9.3 Score=20.67 Aligned_cols=40 Identities=20% Similarity=0.387 Sum_probs=26.8
Q ss_pred CcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 46 NSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
....|.-|-..+.. .. +.. -+..||.+|+ .|-.|...|..
T Consensus 24 ~~~~C~~C~~~I~~-~~--~~a-~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVG-AV--VKA-RDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCS-CC--EES-SSCEECTTTC--------CCSSSCCCTTT
T ss_pred cCCCcccCCCEecc-cE--EEE-CCceECccCC--------EecCCCCCCCC
Confidence 35689999888764 22 223 5678888774 37788777654
No 175
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.92 E-value=10 Score=20.04 Aligned_cols=41 Identities=15% Similarity=0.310 Sum_probs=25.2
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
.....|.-|-..+. ++.+. . -+..||..|+ .|-.|..+|..
T Consensus 13 ~~~~~C~~C~~~I~-~~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 2cor_A 13 LGKYICQKCHAIID-EQPLI--F-KNDPYHPDHF--------NCANCGKELTA 53 (79)
T ss_dssp CCCCBCTTTCCBCC-SCCCC--C-SSSCCCTTTS--------BCSSSCCBCCT
T ss_pred cCCCCCccCCCEec-ceEEE--E-CcceeCCCCC--------EeCCCCCccCC
Confidence 34567888888776 32222 2 5667777664 47777776653
No 176
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.71 E-value=8.3 Score=19.67 Aligned_cols=38 Identities=29% Similarity=0.550 Sum_probs=20.9
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
...|.-|-..+.. +.+. . =+..||..|+ .|-.|..+|.
T Consensus 5 ~~~C~~C~~~I~~-~~~~--a-~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS-GGIT--Y-QDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT-TCEE--E-TTEEECTTTT--------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc-ceEE--E-CccccccCcC--------EECCCCCCCC
Confidence 3567777766643 2222 1 4556776654 3666666654
No 177
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=51.32 E-value=6.4 Score=20.56 Aligned_cols=41 Identities=15% Similarity=0.424 Sum_probs=27.2
Q ss_pred ccccccccccccc---CCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 47 SSACSICLSEYLS---QETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 47 ~~~C~ICl~~~~~---~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
...|+-|-..+.. ...++.. =+..||..|+ .|-.|...|..
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a--~~~~~H~~CF--------~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAY--EGQSWHDYCF--------HCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEE--TTEEEETTTC--------BCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEE--CcceeCcccC--------EehhcCCCCCC
Confidence 4689999888764 2233222 5677888774 48888887753
No 178
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=51.02 E-value=21 Score=18.47 Aligned_cols=36 Identities=17% Similarity=0.367 Sum_probs=29.4
Q ss_pred CcccccccccccccCCceeEeCCCCCccchh-hHHHH
Q 044807 46 NSSACSICLSEYLSQETIKCIPECKHCFHAE-CIDEW 81 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~-Ci~~w 81 (105)
-...|.-|-..+..++....-...-|.||.. ||..+
T Consensus 19 ~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL~~f 55 (62)
T 2das_A 19 AKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCLSSF 55 (62)
T ss_dssp SSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHHHHH
T ss_pred cccChhhccchhhcCceeeeecCchhheechHHHccc
Confidence 4679999999999998877666688999976 88775
No 179
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=50.74 E-value=5.9 Score=22.22 Aligned_cols=44 Identities=18% Similarity=0.435 Sum_probs=26.6
Q ss_pred CCcccccccccccccCCceeEeCCCC---CccchhhHHHHhcC----CCCCcc-ccC
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECK---HCFHAECIDEWPRL----NDKCPV-CIN 93 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~---H~Fh~~Ci~~wl~~----~~~CP~-Cr~ 93 (105)
.+..-| ||-... .++.|..- .|. --||..|+. |.. .-.||. |+.
T Consensus 24 ~~~~yC-iC~~~~-~g~MI~CD-~c~C~~eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVS-YGPMVACD-NPACPFEWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCC-SSSEECCC-SSSCSCSCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCC-CCCEEEec-CCCCccccCcCccCC--CCcCCCCCccCChhhcc
Confidence 345667 998743 24444333 355 679999986 322 345998 863
No 180
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=49.40 E-value=3.1 Score=22.18 Aligned_cols=40 Identities=23% Similarity=0.493 Sum_probs=22.6
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
...|..|-..+..++.+. . -+..||..|+. |-.|..+|..
T Consensus 7 ~~~C~~C~~~I~~~~~~~--a-~~~~~H~~CF~--------C~~C~~~L~~ 46 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQ--C-DGRSFHRCCFL--------CMVCRKNLDS 46 (81)
T ss_dssp -CBCSSSCCBCSSTTEEE--E-TTEEEESSSEE--------CSSSCCEECS
T ss_pred CCcCcCcCccccCceeEE--e-CCcccccccCc--------cCCCCCCCCC
Confidence 456777777775554332 2 45667766542 6666665543
No 181
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=48.83 E-value=17 Score=20.98 Aligned_cols=48 Identities=8% Similarity=0.099 Sum_probs=24.6
Q ss_pred ccccccccccccc-CCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 47 SSACSICLSEYLS-QETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 47 ~~~C~ICl~~~~~-~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
-..|..|-..|.. +...... =|..||..|...-+.....|..|...|.
T Consensus 29 CF~C~~C~~~L~~~~~~~~~~--~g~~yC~~~y~~~~~~~~~C~~C~~~I~ 77 (131)
T 2xjy_A 29 CLSCDLCGCRLGEVGRRLYYK--LGRKLCRRDYLRLFGQDGLCASCDKRIR 77 (131)
T ss_dssp TCBCTTTCCBCSSTTCCEEEE--TTEEECHHHHHHHHCCCEECTTTCCEEC
T ss_pred HcccCcCCCccccCCCeEEEE--CCEEeecCchhhhCCCccChhhcCCccC
Confidence 4566666665542 1122211 3455666666654443335666666554
No 182
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.10 E-value=12 Score=19.03 Aligned_cols=38 Identities=24% Similarity=0.520 Sum_probs=21.6
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
...|..|-..+.. +. +.. -+..||..|+ .|-.|+.+|.
T Consensus 5 ~~~C~~C~~~I~~-~~--~~a-~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITT-GG--VTY-REQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCS-SE--EES-SSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCCcccCCeecc-ce--EEE-CccccCCCCC--------ccCCCCCcCC
Confidence 3567777776653 22 222 4566776664 3666666654
No 183
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=48.00 E-value=8 Score=21.00 Aligned_cols=40 Identities=18% Similarity=0.418 Sum_probs=26.7
Q ss_pred CcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 46 NSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
....|..|-..+. ++.+ .. -+..||..|+ .|-.|+..|..
T Consensus 24 ~~~~C~~C~~~I~-~~~v--~a-~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIR-GPFL--VA-LGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCC-SCEE--EE-TTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCccCCCEec-ceEE--EE-CCccccccCC--------ccCCCCCCCCC
Confidence 4578999988874 3322 22 5778888775 47788777753
No 184
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=47.94 E-value=7.8 Score=20.24 Aligned_cols=46 Identities=24% Similarity=0.483 Sum_probs=27.5
Q ss_pred cccccccccccccCCceeEe-CCCCCccchhhHHHHh---c-----CCCCCccccC
Q 044807 47 SSACSICLSEYLSQETIKCI-PECKHCFHAECIDEWP---R-----LNDKCPVCIN 93 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~l-p~C~H~Fh~~Ci~~wl---~-----~~~~CP~Cr~ 93 (105)
...| ||-.....+..|..- +.|.--||..|+.--- . ....||.||.
T Consensus 10 ~v~C-~C~~~~~~g~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~ 64 (68)
T 2rsd_A 10 KVRC-ICSSTMVNDSMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRL 64 (68)
T ss_dssp EECC-TTCCCSCCSCEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHH
T ss_pred CEEe-ECCCCcCCCCEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccC
Confidence 4556 796655555545433 1387789999974210 1 1356999974
No 185
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=47.78 E-value=0.85 Score=19.04 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=8.8
Q ss_pred ccchhhHHHHhc
Q 044807 72 CFHAECIDEWPR 83 (105)
Q Consensus 72 ~Fh~~Ci~~wl~ 83 (105)
.||..|-.+||.
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 478888888864
No 186
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=45.15 E-value=14 Score=22.53 Aligned_cols=10 Identities=30% Similarity=0.517 Sum_probs=4.6
Q ss_pred cccccccccc
Q 044807 48 SACSICLSEY 57 (105)
Q Consensus 48 ~~C~ICl~~~ 57 (105)
..|..|-..|
T Consensus 34 F~C~~C~~~L 43 (169)
T 2rgt_A 34 LKCSDCHVPL 43 (169)
T ss_dssp SBCTTTCCBC
T ss_pred CccCCCCCcC
Confidence 4444444444
No 187
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=44.04 E-value=3.6 Score=21.22 Aligned_cols=37 Identities=19% Similarity=0.449 Sum_probs=22.2
Q ss_pred cccccccccccccCCce--eEeCC--CCCccchhhHHHHhc
Q 044807 47 SSACSICLSEYLSQETI--KCIPE--CKHCFHAECIDEWPR 83 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~--~~lp~--C~H~Fh~~Ci~~wl~ 83 (105)
...|+-|...++..+.- ..-.. |++.||..|...|-.
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~ 46 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEP 46 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCccc
Confidence 45788887776554321 11112 777888888877754
No 188
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=43.80 E-value=5.6 Score=24.41 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=17.2
Q ss_pred CCCCccchhhHHHHhcCCCCCccccCCCCCCC
Q 044807 68 ECKHCFHAECIDEWPRLNDKCPVCINSATPVH 99 (105)
Q Consensus 68 ~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~~ 99 (105)
.|||.|-.. .....||.|..++..++
T Consensus 137 ~Cg~~~~~~------~~~~~Cp~CG~~~~~~~ 162 (165)
T 2lcq_A 137 GCGRKFSTL------PPGGVCPDCGSKVKLIP 162 (165)
T ss_dssp SSCCEESSC------CGGGBCTTTCCBEEECC
T ss_pred CCCCcccCC------CCCCcCCCCCCcceeCC
Confidence 499988643 22347999988765443
No 189
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=43.59 E-value=11 Score=18.93 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=24.9
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
...|..|-..+. ++.+ .. =+..||..|+ .|-.|..+|..
T Consensus 5 ~~~C~~C~~~I~-~~~~--~a-~~~~~H~~CF--------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-GRVV--NA-MGKQWHVEHF--------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-SCEE--CC-TTSBEETTTC--------BCTTTCCBCSS
T ss_pred CCCCcccCCEec-ceEE--EE-CccccccCcC--------EECCCCCCCCC
Confidence 467888888776 3322 22 5677887764 47778777653
No 190
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=43.25 E-value=6.9 Score=22.41 Aligned_cols=44 Identities=16% Similarity=0.317 Sum_probs=26.0
Q ss_pred CcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCCC
Q 044807 46 NSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATPV 98 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~~ 98 (105)
.+..|++|..++.-... +.+|..|-.. +.....||-|..+|..+
T Consensus 31 M~~~CP~Cq~eL~~~g~--------~~hC~~C~~~-f~~~a~CPdC~q~LevL 74 (101)
T 2jne_A 31 MELHCPQCQHVLDQDNG--------HARCRSCGEF-IEMKALCPDCHQPLQVL 74 (101)
T ss_dssp CCCBCSSSCSBEEEETT--------EEEETTTCCE-EEEEEECTTTCSBCEEE
T ss_pred ccccCccCCCcceecCC--------EEECccccch-hhccccCcchhhHHHHH
Confidence 35899999988754222 2223434221 23455699998887643
No 191
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.16 E-value=15 Score=19.28 Aligned_cols=37 Identities=22% Similarity=0.506 Sum_probs=24.2
Q ss_pred ccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 48 SACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 48 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
..|..|-..+. ++.+. . -+..||..|+ .|-.|...|.
T Consensus 16 ~~C~~C~~~I~-~~~v~--a-~~~~wH~~CF--------~C~~C~~~L~ 52 (81)
T 1v6g_A 16 TRCFSCDQFIE-GEVVS--A-LGKTYHPDCF--------VCAVCRLPFP 52 (81)
T ss_dssp CBCTTTCCBCC-SCCEE--E-TTEEECTTTS--------SCSSSCCCCC
T ss_pred CcCccccCEec-cceEE--E-CCceeCccCC--------ccccCCCCCC
Confidence 58888888876 33222 2 5677888775 3667776664
No 192
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=42.85 E-value=2.9 Score=22.23 Aligned_cols=16 Identities=19% Similarity=-0.064 Sum_probs=11.0
Q ss_pred HhcCCCCCccccCCCC
Q 044807 81 WPRLNDKCPVCINSAT 96 (105)
Q Consensus 81 wl~~~~~CP~Cr~~~~ 96 (105)
||...-.||+|+.++.
T Consensus 4 ~LL~iL~CP~ck~~L~ 19 (68)
T 2jr6_A 4 KFLDILVCPVTKGRLE 19 (68)
T ss_dssp SSSCCCBCSSSCCBCE
T ss_pred HHhhheECCCCCCcCe
Confidence 4444557999988764
No 193
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=42.67 E-value=18 Score=18.28 Aligned_cols=28 Identities=14% Similarity=0.392 Sum_probs=15.8
Q ss_pred CcccccccccccccCCceeEeC--CCCCcc
Q 044807 46 NSSACSICLSEYLSQETIKCIP--ECKHCF 73 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp--~C~H~F 73 (105)
+-..|++|...+...+...+-+ .|++.|
T Consensus 9 ~iL~CP~c~~~L~~~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 9 EILACPACHAPLEERDAELICTGQDCGLAY 38 (56)
T ss_dssp TSCCCSSSCSCEEEETTEEEECSSSCCCEE
T ss_pred hheeCCCCCCcceecCCEEEcCCcCCCcEE
Confidence 4568999988754433222222 366655
No 194
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=41.46 E-value=10 Score=19.22 Aligned_cols=39 Identities=18% Similarity=0.436 Sum_probs=23.6
Q ss_pred ccccccccccccCCceeEeCCCCCccc--hhhHHHHhcCCCCCccccCCCC
Q 044807 48 SACSICLSEYLSQETIKCIPECKHCFH--AECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 48 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh--~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
..|.-|-..+..++..+.. -+..|| .+|+ .|-.|+.+|.
T Consensus 3 ~~C~~C~~~I~~~~~~v~a--~~~~wH~~~~CF--------~C~~C~~~L~ 43 (65)
T 2iyb_E 3 VVCQGCHNAIDPEVQRVTY--NNFSWHASTECF--------LCSCCSKCLI 43 (65)
T ss_dssp EECTTTSSEECTTSCEEEE--TTEEEETTTTTS--------BCTTTCCBCT
T ss_pred CCCcCCCCeeccCceEEEE--CCCccCCCCCCE--------ECCCCCCcCC
Confidence 3577787777653333222 467788 7664 4667776664
No 195
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=40.72 E-value=3.6 Score=28.35 Aligned_cols=48 Identities=23% Similarity=0.370 Sum_probs=31.1
Q ss_pred CCcccccccccccccCCceeEe-C-CCC--CccchhhHHHHhcCCCCCccccCC
Q 044807 45 PNSSACSICLSEYLSQETIKCI-P-ECK--HCFHAECIDEWPRLNDKCPVCINS 94 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~l-p-~C~--H~Fh~~Ci~~wl~~~~~CP~Cr~~ 94 (105)
.....|++|-..-... ++.. . .=| +.+|.-|-..|--....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s--~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAG--MIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEE--EEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCcee--EEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5578999998764332 1110 0 022 456777878887788899999764
No 196
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=40.36 E-value=13 Score=21.72 Aligned_cols=39 Identities=18% Similarity=0.467 Sum_probs=27.8
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
...|.-|-..+.....+. . -+..||..|+ .|-.|+..|.
T Consensus 61 ~~~C~~C~~~I~~~~~v~--a-~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLY--A-MDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEE--E-TTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEE--e-CCcEEccccc--------CcCcCCCccc
Confidence 468999999886543232 2 6778998874 4888888875
No 197
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=40.35 E-value=32 Score=18.11 Aligned_cols=47 Identities=21% Similarity=0.439 Sum_probs=28.7
Q ss_pred ccccccccccccCCceeEeCCCCCccchhhHHHHhc-----CCCCCccccCC
Q 044807 48 SACSICLSEYLSQETIKCIPECKHCFHAECIDEWPR-----LNDKCPVCINS 94 (105)
Q Consensus 48 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~-----~~~~CP~Cr~~ 94 (105)
..--||-..+..+..++.-..|.--||..|+.---. ....||.|+..
T Consensus 10 ~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 10 PVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp CEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred eeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 344488876543333333334888899999864321 24569999653
No 198
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.03 E-value=13 Score=19.52 Aligned_cols=38 Identities=18% Similarity=0.471 Sum_probs=23.8
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
...|..|-..+.. +. +.. =+..||..|+ .|-.|..+|.
T Consensus 15 ~~~C~~C~~~I~~-~~--v~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQ-GG--VTY-RDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCS-CC--EES-SSSEECTTTC--------BCSSSCCBCT
T ss_pred CCcCCCCCCEecC-cE--EEE-CCchhhhhhC--------CcccCCCcCC
Confidence 3578888877754 22 222 5677887664 4777777664
No 199
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=38.81 E-value=45 Score=17.70 Aligned_cols=36 Identities=17% Similarity=0.564 Sum_probs=24.9
Q ss_pred CCcccccccccccccCCceeEeCCCCCccchhhHHHH
Q 044807 45 PNSSACSICLSEYLSQETIKCIPECKHCFHAECIDEW 81 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~w 81 (105)
..+..|-+|.+.-........+. |.-.||..|+..+
T Consensus 28 ~~~v~C~~C~~~~~~~A~ksCl~-C~~s~C~~hl~~~ 63 (78)
T 2ffw_A 28 AEKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT 63 (78)
T ss_dssp SCCCBCSSCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred CCCccCCcCCCCCCCCCeeEccC-ccchhhhhhhHhh
Confidence 34678999986431223345566 9999999999863
No 200
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=38.23 E-value=10 Score=18.58 Aligned_cols=41 Identities=22% Similarity=0.562 Sum_probs=24.4
Q ss_pred ccccccccCCceeEeCCCCCccchhhHHHHh---cCCCCCccccC
Q 044807 52 ICLSEYLSQETIKCIPECKHCFHAECIDEWP---RLNDKCPVCIN 93 (105)
Q Consensus 52 ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl---~~~~~CP~Cr~ 93 (105)
||-.....+..+..- .|.--||..|+.--. .....||.|+.
T Consensus 8 ~C~~~~~~~~MI~Cd-~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 8 FCMKPFAGRPMIECN-ECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp TTCCBCTTCCEEECT-TTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred EeCCcCCCCCEEEcC-CCCccccccccCCCcccCCCcEECcCCCC
Confidence 676654322334434 488889999976322 12456888864
No 201
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=38.04 E-value=25 Score=25.70 Aligned_cols=47 Identities=23% Similarity=0.477 Sum_probs=29.0
Q ss_pred CcccccccccccccCCceeEeCCCCCccchhhHHHHhc-----CCCCCccccC
Q 044807 46 NSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPR-----LNDKCPVCIN 93 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~-----~~~~CP~Cr~ 93 (105)
+..-| ||-..+..+..++.-..|.--||..|+.---. ....||.|+.
T Consensus 36 ~~~yC-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~ 87 (488)
T 3kv5_D 36 PPVYC-VCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAV 87 (488)
T ss_dssp CCEET-TTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHH
T ss_pred CCeEE-eCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcC
Confidence 34455 99887643333333334998899999853211 2346999974
No 202
>2jyp_A Aragonite protein AP7; protein C-terminal fragment, unknown function; NMR {Synthetic}
Probab=37.85 E-value=10 Score=16.85 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=16.5
Q ss_pred CcccccccccccccCCceeEeCCCCCccc
Q 044807 46 NSSACSICLSEYLSQETIKCIPECKHCFH 74 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh 74 (105)
.--+|++|...-.+++... |-.+||
T Consensus 8 pfhecalcysitdpgerqr----cidmyc 32 (36)
T 2jyp_A 8 PFHECALCYSITDPGERQR----CIDMYC 32 (36)
T ss_dssp TTTCCSSSTTTTTTTCTTC----GGGTTT
T ss_pred ccchheeEEeecCcchhhh----hhhhee
Confidence 3468999988776766554 444444
No 203
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=37.84 E-value=22 Score=22.11 Aligned_cols=48 Identities=13% Similarity=0.112 Sum_probs=21.6
Q ss_pred ccccccccccccc-CCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 47 SSACSICLSEYLS-QETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 47 ~~~C~ICl~~~~~-~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
-..|..|-..|.. +...... =+..||..|...-+.....|..|...|.
T Consensus 32 CF~C~~C~~~L~~~g~~~~~~--~g~~yC~~cy~~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 32 CLKCSSCQAQLGDIGTSSYTK--SGMILCRNDYIRLFGNSGACSACGQSIP 80 (188)
T ss_dssp GCBCTTTCCBHHHHCSEEEEE--TTEEECHHHHHHHHSCCEECTTTCCEEC
T ss_pred CcccCCCCcccccCCceEEEe--CCccccccccccccccCCccccCCCccc
Confidence 3555555555433 1112111 3445566665544332224666655543
No 204
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.77 E-value=14 Score=19.51 Aligned_cols=38 Identities=24% Similarity=0.588 Sum_probs=24.6
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
...|.-|-..+.. . ++ .. -+..||..|+ .|-.|...|.
T Consensus 15 ~~~C~~C~~~I~~-~-~~-~a-~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 15 LEKCATCSQPILD-R-IL-RA-MGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp CCBCTTTCCBCCS-C-CE-EE-TTEEECTTTC--------BCSSSCCBCT
T ss_pred CCccccCCCeecc-e-eE-EE-CCccccHHhc--------CcccCCCccC
Confidence 4678888887753 2 22 22 5677887764 4778877765
No 205
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=37.67 E-value=19 Score=22.26 Aligned_cols=45 Identities=13% Similarity=0.236 Sum_probs=26.9
Q ss_pred CcccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 46 NSSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 46 ~~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
.-..|..|-..|.... .. . =|..||..|...- -...|..|...|.
T Consensus 86 ~CF~C~~C~~~L~~~~--f~-~-~g~~yC~~~y~~~--f~~kC~~C~~~I~ 130 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERC--FS-R-GESVYCKDDFFKR--FGTKCAACQLGIP 130 (182)
T ss_dssp STTSCTTTCCCCSSCC--EE-E-TTEEECHHHHHHT--TSCCCTTTCCCCC
T ss_pred ccCccCCCCCccCCCc--ee-E-CCEeeecCccccc--cccccccCCCccC
Confidence 4578888877775432 11 1 4666777776543 2345777766664
No 206
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=36.94 E-value=2.9 Score=22.23 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=9.0
Q ss_pred CCCCCccccCCCC
Q 044807 84 LNDKCPVCINSAT 96 (105)
Q Consensus 84 ~~~~CP~Cr~~~~ 96 (105)
..-.||+|+.++.
T Consensus 7 ~iL~CP~ck~~L~ 19 (68)
T 2hf1_A 7 EILVCPLCKGPLV 19 (68)
T ss_dssp EECBCTTTCCBCE
T ss_pred hheECCCCCCcCe
Confidence 3446888888764
No 207
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=36.60 E-value=3.3 Score=22.15 Aligned_cols=16 Identities=25% Similarity=0.256 Sum_probs=10.6
Q ss_pred HhcCCCCCccccCCCC
Q 044807 81 WPRLNDKCPVCINSAT 96 (105)
Q Consensus 81 wl~~~~~CP~Cr~~~~ 96 (105)
||...-.||.|+.++.
T Consensus 4 ~LL~iL~CP~ck~~L~ 19 (70)
T 2js4_A 4 RLLDILVCPVCKGRLE 19 (70)
T ss_dssp CCCCCCBCTTTCCBEE
T ss_pred HHhhheECCCCCCcCE
Confidence 3444556888888764
No 208
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.49 E-value=19 Score=18.60 Aligned_cols=10 Identities=30% Similarity=0.610 Sum_probs=4.9
Q ss_pred cccccccccc
Q 044807 48 SACSICLSEY 57 (105)
Q Consensus 48 ~~C~ICl~~~ 57 (105)
..|.-|-..+
T Consensus 6 ~~C~~C~~~I 15 (73)
T 1wig_A 6 SGCDSCEKYI 15 (73)
T ss_dssp CSCSSSCCCC
T ss_pred CCcccCCCEe
Confidence 3455555544
No 209
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.29 E-value=22 Score=19.25 Aligned_cols=34 Identities=15% Similarity=0.367 Sum_probs=22.6
Q ss_pred CCCcccccccccccccC-CceeEeCCCCCccchhh
Q 044807 44 GPNSSACSICLSEYLSQ-ETIKCIPECKHCFHAEC 77 (105)
Q Consensus 44 ~~~~~~C~ICl~~~~~~-~~~~~lp~C~H~Fh~~C 77 (105)
...+..|..|.+.|.-- ..-..-+.|.|..|.+|
T Consensus 22 ~~~~r~CarC~~~LG~l~~~g~~C~~Ck~rVC~~C 56 (76)
T 2csz_A 22 HYSDRTCARCQESLGRLSPKTNTCRGCNHLVCRDC 56 (76)
T ss_dssp TCCCCBCSSSCCBCSSSCTTTSEETTTTEECCTTS
T ss_pred CCCccchhhhCccccccccCCCcCcccChhhcccc
Confidence 46678999999986431 11222234899988887
No 210
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=36.05 E-value=19 Score=20.85 Aligned_cols=27 Identities=26% Similarity=0.735 Sum_probs=17.9
Q ss_pred eeEeCCCCCccchhhHHHHhcCCC-CCccccCCCC
Q 044807 63 IKCIPECKHCFHAECIDEWPRLND-KCPVCINSAT 96 (105)
Q Consensus 63 ~~~lp~C~H~Fh~~Ci~~wl~~~~-~CP~Cr~~~~ 96 (105)
..... |||.|-.. .... .||.|.....
T Consensus 74 ~~C~~-CG~~~e~~------~~~~~~CP~Cgs~~~ 101 (119)
T 2kdx_A 74 LECKD-CSHVFKPN------ALDYGVCEKCHSKNV 101 (119)
T ss_dssp EECSS-SSCEECSC------CSTTCCCSSSSSCCC
T ss_pred EEcCC-CCCEEeCC------CCCCCcCccccCCCc
Confidence 34444 99988752 3356 7999987643
No 211
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.49 E-value=16 Score=19.03 Aligned_cols=39 Identities=26% Similarity=0.580 Sum_probs=24.6
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSATP 97 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 97 (105)
...|..|-..+.. +.+. . -+..||..|+ .|-.|+.+|..
T Consensus 15 ~~~C~~C~~~I~~-~~v~--a-~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 1x3h_A 15 SPKCGGCNRPVLE-NYLS--A-MDTVWHPECF--------VCGDCFTSFST 53 (80)
T ss_dssp SCBCTTTCCBCCS-SCEE--E-TTEEECTTTC--------BCSSSCCBSCS
T ss_pred CCccccCCCeecc-eeEE--E-CCCeEecCcC--------ChhhCCCCCCC
Confidence 3578888887764 3222 2 4567887664 47777777654
No 212
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=33.12 E-value=15 Score=22.97 Aligned_cols=39 Identities=23% Similarity=0.565 Sum_probs=22.9
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
...|..|-..+...+.+.. =+..||..|+ .|-.|...|.
T Consensus 115 ~~~C~~C~~~I~~~~~v~a---~~~~~H~~CF--------~C~~C~~~L~ 153 (192)
T 1b8t_A 115 SDGCPRCGQAVYAAEKVIG---AGKSWHKSCF--------RCAKCGKSLE 153 (192)
T ss_dssp CEECTTTSCEECSSSCEEE---TTEEECTTTC--------BCTTTCCBCC
T ss_pred CCcCCCCCCEecCcEEEec---CCCccchhcC--------CccccCCCCC
Confidence 3568888777765544431 4556676653 3666666554
No 213
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=31.72 E-value=29 Score=19.04 Aligned_cols=12 Identities=17% Similarity=0.562 Sum_probs=6.8
Q ss_pred cccccccccccc
Q 044807 48 SACSICLSEYLS 59 (105)
Q Consensus 48 ~~C~ICl~~~~~ 59 (105)
..|+.|-.++..
T Consensus 3 ~~CP~C~~~l~~ 14 (81)
T 2jrp_A 3 ITCPVCHHALER 14 (81)
T ss_dssp CCCSSSCSCCEE
T ss_pred CCCCCCCCcccc
Confidence 456666665543
No 214
>1qdp_A Robustoxin; neurotoxin, cystine knot, inhibitor cystine knot motif, sodium channel modulator, funnel WEB spider, venom; NMR {Atrax robustus} SCOP: g.3.6.2 PDB: 1vtx_A
Probab=31.51 E-value=1.4 Score=20.92 Aligned_cols=14 Identities=29% Similarity=0.854 Sum_probs=11.4
Q ss_pred hhHHHHhcCCCCCc
Q 044807 76 ECIDEWPRLNDKCP 89 (105)
Q Consensus 76 ~Ci~~wl~~~~~CP 89 (105)
.||..|++.+.+|-
T Consensus 19 kCiyAWYnqq~sCq 32 (42)
T 1qdp_A 19 KCIYAWYNQQGSCQ 32 (42)
T ss_dssp EEECCSSCSCCEEE
T ss_pred HHHHHHHccCCchH
Confidence 58889998888874
No 215
>2roo_A Neurotoxin MAGI-4; spider, sodium channel inhibitor, cleavage on PAIR of basic residues, ionic channel inhibitor, knottin, secreted; NMR {Synthetic}
Probab=31.45 E-value=1.3 Score=21.07 Aligned_cols=14 Identities=21% Similarity=0.828 Sum_probs=11.5
Q ss_pred hhHHHHhcCCCCCc
Q 044807 76 ECIDEWPRLNDKCP 89 (105)
Q Consensus 76 ~Ci~~wl~~~~~CP 89 (105)
.||..|++.+.+|-
T Consensus 19 kCiyAWYnqq~sCq 32 (43)
T 2roo_A 19 NCVYAWYNQQSSCE 32 (43)
T ss_dssp EEEECGGGSSEEEE
T ss_pred HHHHHHHccCCchh
Confidence 58889999888874
No 216
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=29.38 E-value=38 Score=19.12 Aligned_cols=36 Identities=6% Similarity=-0.010 Sum_probs=17.2
Q ss_pred ccccccccccccc-CCceeEeCCCCCccchhhHHHHhcC
Q 044807 47 SSACSICLSEYLS-QETIKCIPECKHCFHAECIDEWPRL 84 (105)
Q Consensus 47 ~~~C~ICl~~~~~-~~~~~~lp~C~H~Fh~~Ci~~wl~~ 84 (105)
-..|..|-..|.. +.... .. =+..||..|...-+..
T Consensus 30 CF~C~~C~~~L~~~g~~~~-~~-~g~~yC~~~y~~~f~~ 66 (114)
T 1j2o_A 30 CLSCDLCGCRLGEVGRRLY-YK-LGRKLCRRDYLRLGGS 66 (114)
T ss_dssp TCCCSSSCSCCCCSSSCCC-CB-TTBCCCHHHHHHHHTS
T ss_pred cCcccccCCchhcCCCeeE-EE-CCeeechHHHHHHhCc
Confidence 4566666655542 11111 11 3455666666554443
No 217
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=28.98 E-value=30 Score=21.47 Aligned_cols=20 Identities=25% Similarity=0.482 Sum_probs=12.8
Q ss_pred CCCCccchhhHHHHhcCCCCCccccCC
Q 044807 68 ECKHCFHAECIDEWPRLNDKCPVCINS 94 (105)
Q Consensus 68 ~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~ 94 (105)
.|||++-. .--..||+|..+
T Consensus 143 ~CG~i~~~-------~~p~~CP~Cg~~ 162 (170)
T 3pwf_A 143 ICGYTAVD-------EAPEYCPVCGAP 162 (170)
T ss_dssp TTCCEEES-------CCCSBCTTTCCB
T ss_pred CCCCeeCC-------CCCCCCCCCCCC
Confidence 48887652 223479999764
No 218
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=28.77 E-value=61 Score=25.01 Aligned_cols=40 Identities=20% Similarity=0.550 Sum_probs=29.5
Q ss_pred CCcccccccccccccC-------CceeEeCCCCCccchhhHHHHhcCC
Q 044807 45 PNSSACSICLSEYLSQ-------ETIKCIPECKHCFHAECIDEWPRLN 85 (105)
Q Consensus 45 ~~~~~C~ICl~~~~~~-------~~~~~lp~C~H~Fh~~Ci~~wl~~~ 85 (105)
.-..+|++|.....+. .....+. |+-.||..|+...++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~e~~c~~c~~~~~~~~ 57 (776)
T 4gut_A 11 GCTATCPVCFASASERCAKNGYTSRWYHLS-CGEHFCNECFDHYYRSH 57 (776)
T ss_dssp TCCCSSCCBSCCCSTTCCTTSCBSCEEEEE-TTEEEEHHHHHHHHSTT
T ss_pred CCcccccHHHHHHHHHHHhCCCCcceeEec-cccchhHHHHHHHhccC
Confidence 4467899998766431 2356677 99889999999887664
No 219
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=27.99 E-value=26 Score=20.03 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=24.7
Q ss_pred cccccccccccccCCceeEeCCCCCccchhhHHHHhcCCCCCccccCCCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHAECIDEWPRLNDKCPVCINSAT 96 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~ 96 (105)
-..|..|-..+... ... .. =|..||..|...- ....|..|...|.
T Consensus 30 CF~C~~C~~~L~~~-~f~-~~-~g~~yC~~cy~~~--~~~~C~~C~~~I~ 74 (126)
T 2xqn_T 30 HFCCFDCDSILAGE-IYV-MV-NDKPVCKPCYVKN--HAVVCQGCHNAID 74 (126)
T ss_dssp GSBCTTTCCBCTTS-EEE-EE-TTEEEEHHHHHHH--SCCBCTTTCSBCC
T ss_pred CCCcCCCCCCCCcC-EEE-eE-CCEEechHHhCcC--cCccCcccCCcCC
Confidence 46666676665432 211 22 4556777776543 2455777776665
No 220
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=27.35 E-value=36 Score=19.54 Aligned_cols=25 Identities=24% Similarity=0.652 Sum_probs=18.3
Q ss_pred cccccccccccccCCceeEeCCCCCccch
Q 044807 47 SSACSICLSEYLSQETIKCIPECKHCFHA 75 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~H~Fh~ 75 (105)
...|..|... +.....|. |||++|.
T Consensus 24 ~~~C~~C~~~---~~~W~CL~-CG~vgCg 48 (109)
T 3c5k_A 24 TQPCGDCGTI---QENWVCLS-CYQVYCG 48 (109)
T ss_dssp TCCCTTTCCC---SSEEEETT-TCCEEEC
T ss_pred CCcCccccCC---CCeeeeee-cCccccC
Confidence 4679999875 33466787 9999873
No 221
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=26.65 E-value=16 Score=20.76 Aligned_cols=12 Identities=50% Similarity=0.982 Sum_probs=7.8
Q ss_pred CCCCccccCCCC
Q 044807 85 NDKCPVCINSAT 96 (105)
Q Consensus 85 ~~~CP~Cr~~~~ 96 (105)
...||+|..++.
T Consensus 47 g~~CPvCgs~l~ 58 (112)
T 1l8d_A 47 KGKCPVCGRELT 58 (112)
T ss_dssp SEECTTTCCEEC
T ss_pred CCCCCCCCCcCC
Confidence 445888876654
No 222
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=24.15 E-value=58 Score=22.57 Aligned_cols=35 Identities=20% Similarity=0.561 Sum_probs=25.2
Q ss_pred CCcccccccccccc--cCCceeEeCCCCCccchhhHHH
Q 044807 45 PNSSACSICLSEYL--SQETIKCIPECKHCFHAECIDE 80 (105)
Q Consensus 45 ~~~~~C~ICl~~~~--~~~~~~~lp~C~H~Fh~~Ci~~ 80 (105)
.....|..|-..|. ......+-. ||..+|..|...
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg~~C~~-C~~~~h~~C~~~ 391 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQGYRCYR-CRAPAHKECLGR 391 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCEEEETT-TCCEECGGGGGG
T ss_pred CCCCCCccccchhceeCCCCCCCCC-CcCccchhhhhh
Confidence 45689999988773 223344555 999999999764
No 223
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.75 E-value=66 Score=16.76 Aligned_cols=45 Identities=27% Similarity=0.491 Sum_probs=25.1
Q ss_pred cccccccccccccCCceeEeCCCC---CccchhhHHHHh--cCCCCCccccCC
Q 044807 47 SSACSICLSEYLSQETIKCIPECK---HCFHAECIDEWP--RLNDKCPVCINS 94 (105)
Q Consensus 47 ~~~C~ICl~~~~~~~~~~~lp~C~---H~Fh~~Ci~~wl--~~~~~CP~Cr~~ 94 (105)
..-| ||-... .+..|.... |. .-||..|+.--- ...-.||.|+..
T Consensus 6 ~~yC-~C~~~~-~g~MI~CD~-cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~ 55 (70)
T 1x4i_A 6 SGYC-ICNQVS-YGEMVGCDN-QDCPIEWFHYGCVGLTEAPKGKWYCPQCTAA 55 (70)
T ss_dssp CCCS-TTSCCC-CSSEECCSC-TTCSCCCEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CeEE-EcCCCC-CCCEeEeCC-CCCCccCCcccccccCcCCCCCEECCCCCcc
Confidence 3445 587652 344444333 53 679999987211 113358888653
No 224
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=21.02 E-value=31 Score=14.60 Aligned_cols=9 Identities=44% Similarity=1.191 Sum_probs=6.0
Q ss_pred CCccccCCC
Q 044807 87 KCPVCINSA 95 (105)
Q Consensus 87 ~CP~Cr~~~ 95 (105)
.||+|...+
T Consensus 8 qcpvcqq~m 16 (29)
T 3vhs_A 8 QCPVCQQMM 16 (29)
T ss_dssp ECTTTCCEE
T ss_pred eChHHHHhC
Confidence 488886643
No 225
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=20.76 E-value=40 Score=19.15 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=20.0
Q ss_pred ceeEeCCCCCccchhhHHHHhcC--------CCCCccccC
Q 044807 62 TIKCIPECKHCFHAECIDEWPRL--------NDKCPVCIN 93 (105)
Q Consensus 62 ~~~~lp~C~H~Fh~~Ci~~wl~~--------~~~CP~Cr~ 93 (105)
.++.-..|...||..|+...... ...||.|+.
T Consensus 74 ~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 74 KLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp SCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred ceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 34333459999999998653221 234998865
No 226
>3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 4gaq_R* 4gas_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R ...
Probab=20.64 E-value=27 Score=18.80 Aligned_cols=18 Identities=11% Similarity=0.187 Sum_probs=1.4
Q ss_pred hcCCCCCccccCCCCCCC
Q 044807 82 PRLNDKCPVCINSATPVH 99 (105)
Q Consensus 82 l~~~~~CP~Cr~~~~~~~ 99 (105)
..+...||+|+..+..++
T Consensus 5 ~~r~k~C~fc~~~~~~iD 22 (75)
T 3i1m_R 5 FRRRKFCRFTAEGVQEID 22 (75)
T ss_dssp ---------------CCS
T ss_pred CCCCCCCCcccCCCCcCC
Confidence 345678999988776544
No 227
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=20.30 E-value=34 Score=16.66 Aligned_cols=29 Identities=24% Similarity=0.763 Sum_probs=22.2
Q ss_pred ccccccccccccCCceeEeCCCCCccchhhHH
Q 044807 48 SACSICLSEYLSQETIKCIPECKHCFHAECID 79 (105)
Q Consensus 48 ~~C~ICl~~~~~~~~~~~lp~C~H~Fh~~Ci~ 79 (105)
..|-.|...+-.+ ..... |+-.+|.+|..
T Consensus 15 t~C~~C~k~i~~G--~kC~~-Ck~~cH~kC~~ 43 (49)
T 1kbe_A 15 QVCNVCQKSMIFG--VKCKH-CRLKCHNKCTK 43 (49)
T ss_dssp CCCSSSCCSSCCE--EEETT-TTEEESSSCTT
T ss_pred cCccccCceeECc--CCCCC-CCCccchhhcC
Confidence 6899998887644 55555 99999998854
No 228
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.14 E-value=54 Score=16.76 Aligned_cols=21 Identities=14% Similarity=0.446 Sum_probs=13.1
Q ss_pred hhccccCCCCCCccccccccc
Q 044807 35 VLEESKCLPGPNSSACSICLS 55 (105)
Q Consensus 35 ~~~~~~~~~~~~~~~C~ICl~ 55 (105)
.+.+.......++..|.||-.
T Consensus 7 ~~sk~Qr~p~pgePvCvvCGr 27 (60)
T 2yqp_A 7 GFSKTQRWAEPGEPICVVCGR 27 (60)
T ss_dssp CSCCCCCCCCTTSCCCSSSSS
T ss_pred chhhhhcCCCCCCceEEEecC
Confidence 344444444567788999954
Done!