BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044808
(623 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XE4|A Chain A, Structure Of Oligopeptidase B From Leishmania Major
Length = 751
Score = 211 bits (538), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 171/581 (29%), Positives = 255/581 (43%), Gaps = 28/581 (4%)
Query: 27 RLDNYHWLRDAGR-DPDVQRYLELENKYAESIMSETNGYEFALFNELKARFKEDDISVPV 85
R D Y W+RD R DP V +L E Y ++ ++ ++ E + EDD+S P
Sbjct: 64 REDPYFWMRDDDRKDPAVIEHLNKEKVYFQARSADIAQLRDDIYAEHISHINEDDMSAPY 123
Query: 86 RVGSHYYYQRRYLSKDYVQYCRRFIPNNEAPPSVYDIMPTGXXXXXXXXXXXXXXXKYKN 145
G + YY R K Y YCR F ++ P V + K
Sbjct: 124 VYGKYRYYTREVKGKPYKIYCRVF--TDKEPGDVAAEEVIIDVNQVAEGKAFCDVMEVKP 181
Query: 146 SLENYRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQGCLEFEWAGDEAFLY- 204
+ + + AF V + V E I + A+K E W D L+
Sbjct: 182 APPEHDLVAFSVDMSGNEVYTIE----FKRISDPSQTIADKVSGTNGEIVWGPDHTSLFY 237
Query: 205 -TRRNAIAEPQVWFHKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFV 263
T+ + E +VW H +G+ QS+D CLY LF + + L + S++ T V
Sbjct: 238 VTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEV 297
Query: 264 YYFDVSRPE---TLWFLPPWHLGIDMFVSHRGNQFFIRRSD--GGFHSDVLTCPVDNTFE 318
+ D+ + TL + P G+ V G + ++ G + +L P +
Sbjct: 298 HLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSD 357
Query: 319 -TTVLIPHXXXXXXXXXXLFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTV--- 374
+ VL+ H + ++++ V GL +I T K G R V
Sbjct: 358 WSHVLVDHSEDVFMESIAVRSNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVME 417
Query: 375 -DIFKSELCISRIHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTGISVLKKKETILGG 433
IF L S++ ++ R+ + ++ P + +D K + GG
Sbjct: 418 EPIFTVHLVESQM-----LEYEEPTFRMEYSSLATPNTWFDVSPQDHSRTAVKVREVGGG 472
Query: 434 FDESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDXXXXXXXXXXXXXXXXXXNSIA 493
FD +NY E + A A D +IP+S+VY K+ LD S
Sbjct: 473 FDAANYKVERRFATAPDQTKIPLSVVYHKD---LDMSQPQPCMLYGYGSYGLSMDPQFSI 529
Query: 494 SRLTILDRGIIFAIAHVRGGDEKGKQWHENG-KLLNKRNTFTDFIACADYLIKSNYCSED 552
L DRG+IFAIAH+RGG E G+ W+E G K L KRNTF+DFIA A++L+ + +
Sbjct: 530 QHLPYCDRGMIFAIAHIRGGSELGRAWYEIGAKYLTKRNTFSDFIAAAEFLVNAKLTTPS 589
Query: 553 NLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVLTTI 593
L EG SAGG+L+GAVLNMRP+LFKVA+A VP VDV+TT+
Sbjct: 590 QLACEGRSAGGLLMGAVLNMRPDLFKVALAGVPFVDVMTTM 630
>pdb|2BKL|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
pdb|2BKL|B Chain B, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 695
Score = 143 bits (360), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 154/619 (24%), Positives = 257/619 (41%), Gaps = 82/619 (13%)
Query: 8 LSPPEAKKVPFLMEIFGDKRLDNYHWLRDAGRDPDVQRYLELENKYAESIMSETNGYEFA 67
+S P + + + G + D Y WL D + P+VQ ++ +N +A +++ G E
Sbjct: 1 MSYPATRAEQVVDTLHGVQVADPYRWLEDE-KAPEVQTWMTAQNAHAREALAKFPGRE-- 57
Query: 68 LFNELKARFKE----DDISVPVRVGSHYYYQRRYLSKD-YVQYCRRFIPNNEAPPSVYDI 122
L ARFKE D +S P R ++Y R + K+ + Y R+ E+ +
Sbjct: 58 ---ALAARFKELFYTDSVSTPSRRNGRFFYVRTHKDKEKAILYWRQ----GESGQEKVLL 110
Query: 123 MPTGXXXXXXXXXXXXXXXKYKNSLENYRITAFKVSPNNKLVAFRE-----NCGTVCVID 177
P G + + VS + K VAF + + + VID
Sbjct: 111 DPNGWSKDGTVS-----------------LGTWAVSWDGKKVAFAQKPNAADEAVLHVID 153
Query: 178 SETG--------------APAEKPIQGCLEFEW-AGDEAFLYTRRNAIAEPQVWFHKLGE 222
++G P P +EW D + R + +H LG
Sbjct: 154 VDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYT--TIRYHTLGT 211
Query: 223 EQSKDTCLY-RTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRP-ETLWFLPPW 280
E SKDT ++ RT + L + S K+LFV + Y+ RP E + L
Sbjct: 212 EPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYW--KRPGEKDFRLLVK 269
Query: 281 HLGIDMFVSHRGNQFFIRRSDGGFHSDVLTC----PVDNTFETTVLIPHXXXXXXXXXXL 336
+G V ++F++ +G V P +++ ++P +
Sbjct: 270 GVGAKYEVHAWKDRFYVLTDEGAPRQRVFEVDPAKPARASWKE--IVPEDSSASLLSVSI 327
Query: 337 FADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCISRIHGIRDSQFSS 396
H+++ L++ ++ L G+P++T+Q S + G+ D +
Sbjct: 328 VGGHLSLEYLKDATSEVRVATLK--GKPVRTVQ-------LPGVGAASNLMGLEDLDDAY 378
Query: 397 SILRICFYTMRMPFSAYDYDMNTGISVLKKKETILGGFDESNYVTESKRAYASDGEEIPI 456
+ F + P Y ++TG S L K + + Y E + DG ++P+
Sbjct: 379 YV----FTSFTTPRQIYKTSVSTGKSELWAKVDVP--MNPEQYQVEQVFYASKDGTKVPM 432
Query: 457 SIVYRKNRVKLDGSDXXXXXXXXXXXXXXXXXXNSIASRLTILDRGIIFAIAHVRGGDEK 516
+V+RK+ +K DG+ N +S L LD G ++A+A++RGG E
Sbjct: 433 FVVHRKD-LKRDGN--APTLLYGYGGFNVNMEANFRSSILPWLDAGGVYAVANLRGGGEY 489
Query: 517 GKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPEL 576
GK WH+ G+L K+N F DF A A+YL++ Y L I GGS GG+L+GA + RPEL
Sbjct: 490 GKAWHDAGRLDKKQNVFDDFHAAAEYLVQQKYTQPKRLAIYGGSNGGLLVGAAMTQRPEL 549
Query: 577 FKVAVADVPSVDVLTTILF 595
+ V VP +D++ LF
Sbjct: 550 YGAVVCAVPLLDMVRYHLF 568
>pdb|3IUN|A Chain A, Appep_d622n Opened State
pdb|3IUQ|A Chain A, Appep_d622n+pp Closed State
pdb|3IUR|A Chain A, Appep_d266nx+h2h3 Opened State
Length = 693
Score = 140 bits (352), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 145/613 (23%), Positives = 247/613 (40%), Gaps = 71/613 (11%)
Query: 3 SHRQRLSPPEAKKVPFLMEIFGDKRLDNYHWLRDAGRDPDVQRYLELENKYAESIMSETN 62
S + RL P ++ + FG D Y WL D R P+ + +++ +N + +++
Sbjct: 5 SGKARLHYPVTRQGEQVDHYFGQAVADPYRWLED-DRSPETEAWVKAQNAVTQDYLAQIP 63
Query: 63 GYEFALFNELKARFKEDDISVPVRVGSHYYYQRRYLSKDYVQYCRRFIPNNEAPPSVYDI 122
Y A+ +L A + P R G ++Y+ D +Q E P+ +
Sbjct: 64 -YRAAIKEKLAASWNYAKEGAPFREGRYHYF----FKNDGLQNQNVLWRQQEGKPAEVFL 118
Query: 123 MPTGXXXXXXXXXXXXXXXKYKNSLENYRITAFKVSPNNKLVAFRENCGTVCVIDSETGA 182
P + + RI A+ +S +RE + ++D E+
Sbjct: 119 DPNTLSPDGTTALDQLSFSR------DGRILAYSLSLAGS--DWRE----IHLMDVESKQ 166
Query: 183 PAEKPIQGC--LEFEWAGDEAFLYTRRNA---------IAEPQVWFHKLGEEQSKDTCLY 231
P E P++ W G+E F Y+ + + +V+FH+LG Q D ++
Sbjct: 167 PLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVF 226
Query: 232 RTREDLFDLTLEAS--ESKKFLFVKSKTKVTGF-VYYFDVSRPETLWFLPPWHLGIDM-F 287
+ A+ E +FL + + +G +Y D+S+ L D+
Sbjct: 227 GAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL 286
Query: 288 VSHRGNQFFIRRSDGGFHSDVLTCPVDNTFETTV--LIP---HXXXXXXXXXXLFADHIA 342
V ++G+ ++ + + ++T N LIP LFA+++
Sbjct: 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMV 346
Query: 343 -----VYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCISRIHGIRDSQFSSS 397
V + + ++ LP +G +S +G D
Sbjct: 347 DATARVEQFDYEGKRVREVALPGLG-------------------SVSGFNGKHDD----P 383
Query: 398 ILRICFYTMRMPFSAYDYDMNTGISVLKKKETILGGFDESNYVTESKRAYASDGEEIPIS 457
L F P + Y ++ +G L + F +YV+E + + DG +P+
Sbjct: 384 ALYFGFENYAQPPTLYRFEPKSGAISLYRASA--APFKPEDYVSEQRFYQSKDGTRVPLI 441
Query: 458 IVYRKNRVKLDGSDXXXXXXXXXXXXXXXXXXNSIASRLTILDRGIIFAIAHVRGGDEKG 517
I YRK +KLDGS+ + S LD G ++A+A++RGG E G
Sbjct: 442 ISYRKG-LKLDGSNPTILYGYGGFDVSLTPSFS--VSVANWLDLGGVYAVANLRGGGEYG 498
Query: 518 KQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELF 577
+ WH G NK+N F DFIA A+YL Y D L I GGS GG+L+GAV+ RP+L
Sbjct: 499 QAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLM 558
Query: 578 KVAVADVPSVDVL 590
+VA+ V +D+L
Sbjct: 559 RVALPAVGVLDML 571
>pdb|3MUN|A Chain A, Appep_pepclose Closed State
pdb|3MUO|A Chain A, Appep_pepclose+pp Closed State
Length = 693
Score = 136 bits (342), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 143/613 (23%), Positives = 247/613 (40%), Gaps = 71/613 (11%)
Query: 3 SHRQRLSPPEAKKVPFLMEIFGDKRLDNYHWLRDAGRDPDVQRYLELENKYAESIMSETN 62
S + RL P ++ + FG D Y WL D R P+ + +++ +N + +++
Sbjct: 5 SGKARLHYPVTRQGEQVDHYFGQAVADPYRWLED-DRSPETEAWVKAQNAVTQDYLAQIP 63
Query: 63 GYEFALFNELKARFKEDDISVPVRVGSHYYYQRRYLSKDYVQYCRRFIPNNEAPPSVYDI 122
Y A+ +L A + P G ++Y+ D +Q E P+ +
Sbjct: 64 -YRAAIKEKLAASWNYAKEGAPFWWGRYHYF----FKNDGLQNQNVLWRQQEGKPAEVFL 118
Query: 123 MPTGXXXXXXXXXXXXXXXKYKNSLENYRITAFKVSPNNKLVAFRENCGTVCVIDSETGA 182
P + + RI A+ +S +RE + ++D E+
Sbjct: 119 DPNTLSPDGTTALDQLSFSR------DGRILAYSLSLAGS--DWRE----IHLMDVESKQ 166
Query: 183 PAEKPIQGC--LEFEWAGDEAFLYTRRNA---------IAEPQVWFHKLGEEQSKDTCLY 231
P E P++ W G+E F Y+ + + +V+FH+LG Q D ++
Sbjct: 167 PLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVF 226
Query: 232 RTREDLFDLTLEAS--ESKKFLFVKSKTKVTGF-VYYFDVSRPETLWFLPPWHLGIDM-F 287
+ A+ E ++FL + + +G +Y D+S+ L D+
Sbjct: 227 GAIPAQHHRYVGATVTEDQRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL 286
Query: 288 VSHRGNQFFIRRSDGGFHSDVLTCPVDNTFETTV--LIP---HXXXXXXXXXXLFADHIA 342
V ++G+ ++ + + ++T N LIP LFA+++
Sbjct: 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYMV 346
Query: 343 -----VYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCISRIHGIRDSQFSSS 397
V + + ++ LP +G +S +G +
Sbjct: 347 DATARVEQFDYEGKRVREVALPGLG-------------------SVSGFNGY----WWDP 383
Query: 398 ILRICFYTMRMPFSAYDYDMNTGISVLKKKETILGGFDESNYVTESKRAYASDGEEIPIS 457
L F P + Y ++ +G L + F +YV+E + + DG +P+
Sbjct: 384 ALYFGFENYAQPPTLYRFEPKSGAISLYRASA--APFKPEDYVSEQRFYQSKDGTRVPLI 441
Query: 458 IVYRKNRVKLDGSDXXXXXXXXXXXXXXXXXXNSIASRLTILDRGIIFAIAHVRGGDEKG 517
I YRK +KLDGS+ + S LD G ++A+A++RGG E G
Sbjct: 442 ISYRKG-LKLDGSNPTILYGYGGFDVSLTPSFS--VSVANWLDLGGVYAVANLRGGGEYG 498
Query: 518 KQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELF 577
+ WH G NK+N F DFIA A+YL Y D L I GGS GG+L+GAV+ RP+L
Sbjct: 499 QAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVMTQRPDLM 558
Query: 578 KVAVADVPSVDVL 590
+VA+ V +D+L
Sbjct: 559 RVALPAVGVLDML 571
>pdb|3IUJ|A Chain A, Appep_wt2 Opened State
pdb|3IUL|A Chain A, Appep_wt1 Opened State
pdb|3IUM|A Chain A, Appep_wtx Opened State
Length = 693
Score = 135 bits (341), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 146/619 (23%), Positives = 247/619 (39%), Gaps = 74/619 (11%)
Query: 3 SHRQRLSPPEAKKVPFLMEIFGDKRLDNYHWLRDAGRDPDVQRYLELENKYAESIMSETN 62
S + RL P ++ + FG D Y WL D R P+ + +++ +N + +++
Sbjct: 5 SGKARLHYPVTRQGEQVDHYFGQAVADPYRWLED-DRSPETEAWVKAQNAVTQDYLAQIP 63
Query: 63 GYEFALFNELKARFKEDDISVPVRVGSHYYYQRRYLSKDYVQYCRRFIPNNEAPPSVYDI 122
Y A+ +L A + P R G ++Y+ D +Q E P+ +
Sbjct: 64 -YRAAIKEKLAASWNYAKEGAPFREGRYHYF----FKNDGLQNQNVLWRQQEGKPAEVFL 118
Query: 123 MPTGXXXXXXXXXXXXXXXKYKNSLENYRITAFKVSPNNKLVAFRENCGTVCVIDSETGA 182
P + + RI A+ +S +RE + + D E+
Sbjct: 119 DPNTLSPDGTTALDQLSFSR------DGRILAYSLSLAGS--DWRE----IHLXDVESKQ 166
Query: 183 PAEKPIQGC--LEFEWAGDEAFLYTRRNA---------IAEPQVWFHKLGEEQSKDTCLY 231
P E P++ W G+E F Y+ + + +V+FH+LG Q D ++
Sbjct: 167 PLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVF 226
Query: 232 RTREDLFDLTLEAS--ESKKFLFVKSKTKVTGF-VYYFDVSRPETLWFLPPWHLGIDM-F 287
+ A+ E +FL + + +G +Y D+S+ L D+
Sbjct: 227 GAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL 286
Query: 288 VSHRGNQFFIRRSDGGFHSDVLTCPVDNTFETTV--LIP---HXXXXXXXXXXLFADHIA 342
V ++G+ ++ + + ++T N LIP LFA++
Sbjct: 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYXV 346
Query: 343 -----VYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCISRIHGIRDSQFSSS 397
V + + ++ LP +G +S +G D
Sbjct: 347 DATARVEQFDYEGKRVREVALPGLG-------------------SVSGFNGKHDD----P 383
Query: 398 ILRICFYTMRMPFSAYDYDMNTGISVLKKKETILGGFDESNYVTESKRAYASDGEEIPIS 457
L F P + Y ++ +G L + F +YV+E + + DG +P+
Sbjct: 384 ALYFGFENYAQPPTLYRFEPKSGAISLYRASAAP--FKPEDYVSEQRFYQSKDGTRVPLI 441
Query: 458 IVYRKNRVKLDGSDXXXXXXXXXXXXXXXXXXNSIASRLTILDRGIIFAIAHVRGGDEKG 517
I YRK +KLDGS+ + S LD G ++A+A++RGG E G
Sbjct: 442 ISYRKG-LKLDGSNPTILYGYGGFDVSLTPSFS--VSVANWLDLGGVYAVANLRGGGEYG 498
Query: 518 KQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELF 577
+ WH G NK+N F DFIA A+YL Y D L I GGS GG+L+GAV RP+L
Sbjct: 499 QAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPDLX 558
Query: 578 KVAVADVPSVDVLTTILFY 596
+VA +P+V VL + ++
Sbjct: 559 RVA---LPAVGVLDXLRYH 574
>pdb|3IVM|A Chain A, Appep_wt+pp Closed State
Length = 693
Score = 135 bits (340), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 146/619 (23%), Positives = 247/619 (39%), Gaps = 74/619 (11%)
Query: 3 SHRQRLSPPEAKKVPFLMEIFGDKRLDNYHWLRDAGRDPDVQRYLELENKYAESIMSETN 62
S + RL P ++ + FG D Y WL D R P+ + +++ +N + +++
Sbjct: 5 SGKARLHYPVTRQGEQVDHYFGQAVADPYRWLED-DRSPETEAWVKAQNAVTQDYLAQIP 63
Query: 63 GYEFALFNELKARFKEDDISVPVRVGSHYYYQRRYLSKDYVQYCRRFIPNNEAPPSVYDI 122
Y A+ +L A + P R G ++Y+ D +Q E P+ +
Sbjct: 64 -YRAAIKEKLAASWNYAKEGAPFREGRYHYF----FKNDGLQNQNVLWRQQEGKPAEVFL 118
Query: 123 MPTGXXXXXXXXXXXXXXXKYKNSLENYRITAFKVSPNNKLVAFRENCGTVCVIDSETGA 182
P + + RI A+ +S +RE + + D E+
Sbjct: 119 DPNTLSPDGTTALDQLSFSR------DGRILAYSLSLAGS--DWRE----IHLXDVESKQ 166
Query: 183 PAEKPIQGC--LEFEWAGDEAFLYTRRNA---------IAEPQVWFHKLGEEQSKDTCLY 231
P E P++ W G+E F Y+ + + +V+FH+LG Q D ++
Sbjct: 167 PLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVF 226
Query: 232 RTREDLFDLTLEAS--ESKKFLFVKSKTKVTGF-VYYFDVSRPETLWFLPPWHLGIDM-F 287
+ A+ E +FL + + +G +Y D+S+ L D+
Sbjct: 227 GAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL 286
Query: 288 VSHRGNQFFIRRSDGGFHSDVLTCPVDNTFETTV--LIP---HXXXXXXXXXXLFADHIA 342
V ++G+ ++ + + ++T N LIP LFA++
Sbjct: 287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVLTVHSGSGYLFAEYXV 346
Query: 343 -----VYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCISRIHGIRDSQFSSS 397
V + + ++ LP +G +S +G D
Sbjct: 347 DATARVEQFDYEGKRVREVALPGLG-------------------SVSGFNGKHDD----P 383
Query: 398 ILRICFYTMRMPFSAYDYDMNTGISVLKKKETILGGFDESNYVTESKRAYASDGEEIPIS 457
L F P + Y ++ +G L + F +YV+E + + DG +P+
Sbjct: 384 ALYFGFENYAQPPTLYRFEPKSGAISLYRASAAP--FKPEDYVSEQRFYQSKDGTRVPLI 441
Query: 458 IVYRKNRVKLDGSDXXXXXXXXXXXXXXXXXXNSIASRLTILDRGIIFAIAHVRGGDEKG 517
I YRK +KLDGS+ + S LD G ++A+A++RGG E G
Sbjct: 442 ISYRKG-LKLDGSNPTILYGYGGFDVSLTPSFS--VSVANWLDLGGVYAVANLRGGGEYG 498
Query: 518 KQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELF 577
+ WH G NK+N F DFIA A+YL Y D L I GGS GG+L+GAV RP+L
Sbjct: 499 QAWHLAGTQQNKQNVFDDFIAAAEYLKAEGYTRTDRLAIRGGSNGGLLVGAVXTQRPDLX 558
Query: 578 KVAVADVPSVDVLTTILFY 596
+VA +P+V VL + ++
Sbjct: 559 RVA---LPAVGVLDXLRYH 574
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 146/613 (23%), Positives = 238/613 (38%), Gaps = 81/613 (13%)
Query: 11 PEAKKVPFLMEIFGDKRLDNYHWLR-DAGRDPDVQRYLELENKYAESIMSETNGYEFALF 69
P + +VP + + FG+K D + WL D D V +++ ++ Y + + + AL
Sbjct: 41 PASPQVPLVEDHFGEKVSDPWRWLEADVRTDAKVAAWVQAQSAYTAAYLKQLP-ERAALE 99
Query: 70 NELKARFKEDDISVPVRVGSHYYYQRRYLSKDYVQYCRRFIPNNEAPPSVYDIMPTGXXX 129
+KA + +P R G+ +Y + Q R P+ + G
Sbjct: 100 KRMKALIDYERFGLPQRRGASVFYSWNSGLMNQSQLLVR--------PADAPVGTKGRVL 151
Query: 130 XXXXXXXXXXXXKYKNSLENYRITAFKVSPNNKLVAFR-ENCGTVCVIDSETGAPAEKPI 188
+ A+ S + +L+A+ ++ G+ G KP+
Sbjct: 152 LDPNTWAKDGATA---------LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPL 202
Query: 189 QGCLEF------EWAGDEAFLYTRRNAIAEPQ-------------VWFHKLGEEQSKDTC 229
L++ W G++A LY+R AEP+ VW H+LG QS D
Sbjct: 203 ADELKWVKFSGLAWLGNDALLYSR---FAEPKEGQAFQALNYNQTVWLHRLGTPQSADQP 259
Query: 230 LYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDM--- 286
++ T E + S V + ++ T V V+R P L D+
Sbjct: 260 VFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ 319
Query: 287 --FVSHRGNQFFIRRSDGGFHSDVLTCPVDNT---FETTVLIPHXX----XXXXXXXXLF 337
FV G+Q + DG ++ + + F+T ++P LF
Sbjct: 320 WDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDT--VVPESKDNLESVGIAGNRLF 377
Query: 338 ADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCISRIHGIRDSQFSSS 397
A +I + ++ + L G+P G ++ S +S G R + S
Sbjct: 378 ASYI-----HDAKSQVLAFDLD--GKP----AGAVSLPGIGSASGLSGRPGDRHAYLS-- 424
Query: 398 ILRICFYTMRMPFSAYDYDMNTGISVLKKKETILGGFDESNYVTESKRAYASDGEEIPIS 457
F + P + D T + E + FD +++ E + DG ++P+
Sbjct: 425 -----FSSFTQPATVLALDPATAKTT--PWEPVHLTFDPADFRVEQVFYPSKDGTKVPMF 477
Query: 458 IVYRKNRVKLDGSDXXXXXXXXXXXXXXXXXXNSIASRLTILDRGIIFAIAHVRGGDEKG 517
IV RK D A +T +D G FA+A++RGG E G
Sbjct: 478 IVRRK-----DAKGPLPTLLYGYGGFNVALTPWFSAGFMTWIDSGGAFALANLRGGGEYG 532
Query: 518 KQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELF 577
WH+ G+ K+N F DFIA ++LI + L IEGGS GG+LIGAV N RP+LF
Sbjct: 533 DAWHDAGRRDKKQNVFDDFIAAGEWLIANGVTPRHGLAIEGGSNGGLLIGAVTNQRPDLF 592
Query: 578 KVAVADVPSVDVL 590
A V +D+L
Sbjct: 593 AAASPAVGVMDML 605
>pdb|3DDU|A Chain A, Prolyl Oligopeptidase With Gsk552
Length = 709
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/165 (40%), Positives = 89/165 (53%), Gaps = 4/165 (2%)
Query: 427 KETILGGFDESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDXXXXXXXXXXXXXXX 486
+E + G D S+Y T + DG +IP+ IV++K +KLDGS
Sbjct: 422 REVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKG-IKLDGS--HPAFLYGYGGFNIS 478
Query: 487 XXXNSIASRLTILDR-GIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIK 545
N SRL + G I A+A++RGG E G+ WH+ G L NK+N F DF A+YLIK
Sbjct: 479 ITPNYSVSRLIFVRHMGGILAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIK 538
Query: 546 SNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVL 590
Y S L I GGS GG+L+ A N RP+LF +A V +D+L
Sbjct: 539 EGYTSPKRLTINGGSNGGLLVAACANQRPDLFGCVIAQVGVMDML 583
>pdb|1E5T|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant
Length = 710
Score = 110 bits (274), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 77/228 (33%), Positives = 109/228 (47%), Gaps = 8/228 (3%)
Query: 365 LKTLQGGRTVDIFKSELCISRIHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTG-ISV 423
L L G + IF E + + G + + I CF + P Y D+ +
Sbjct: 363 LHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIF-YCFTSFLSPGIIYHCDLTKEELEP 419
Query: 424 LKKKETILGGFDESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDXXXXXXXXXXXX 483
+E + G D S+Y T + DG +IP+ IV++K +KLDGS
Sbjct: 420 RVFREVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKG-IKLDGS--HPAFLYGYGGF 476
Query: 484 XXXXXXNSIASRLTILDR-GIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADY 542
N SRL + G + A+A++RGG E G+ WH+ G L NK+N F DF A+Y
Sbjct: 477 NISITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEY 536
Query: 543 LIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVL 590
LIK Y S L I GGS GG+L+ N RP+LF +A V +D+L
Sbjct: 537 LIKEGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDML 584
>pdb|1O6G|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641n Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
Query: 427 KETILGGFDESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDXXXXXXXXXXXXXXX 486
+E + G D S+Y T + DG +IP+ IV++K +KLDGS
Sbjct: 423 REVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKG-IKLDGS--HPAFLYGYGGFNIS 479
Query: 487 XXXNSIASRLTILDR-GIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIK 545
N SRL + G + A+A++RGG E G+ WH+ G L NK+N F DF A+YLIK
Sbjct: 480 ITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIK 539
Query: 546 SNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVL 590
Y S L I GGS GG+L+ N RP+LF +A V +D+L
Sbjct: 540 EGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDML 584
>pdb|1QFM|A Chain A, Prolyl Oligopeptidase From Porcine Muscle
Length = 710
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
Query: 427 KETILGGFDESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDXXXXXXXXXXXXXXX 486
+E + G D S+Y T + DG +IP+ IV++K +KLDGS
Sbjct: 423 REVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKG-IKLDGS--HPAFLYGYGGFNIS 479
Query: 487 XXXNSIASRLTILDR-GIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIK 545
N SRL + G + A+A++RGG E G+ WH+ G L NK+N F DF A+YLIK
Sbjct: 480 ITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIK 539
Query: 546 SNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVL 590
Y S L I GGS GG+L+ N RP+LF +A V +D+L
Sbjct: 540 EGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDML 584
>pdb|1O6F|A Chain A, Prolyl Oligopeptidase From Porcine Brain, D641a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 109 bits (272), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
Query: 427 KETILGGFDESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDXXXXXXXXXXXXXXX 486
+E + G D S+Y T + DG +IP+ IV++K +KLDGS
Sbjct: 423 REVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKG-IKLDGS--HPAFLYGYGGFNIS 479
Query: 487 XXXNSIASRLTILDR-GIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIK 545
N SRL + G + A+A++RGG E G+ WH+ G L NK+N F DF A+YLIK
Sbjct: 480 ITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIK 539
Query: 546 SNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVL 590
Y S L I GGS GG+L+ N RP+LF +A V +D+L
Sbjct: 540 EGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDML 584
>pdb|1VZ3|A Chain A, Prolyl Oligopeptidase From Porcine Brain, T597c Mutant
Length = 710
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
Query: 427 KETILGGFDESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDXXXXXXXXXXXXXXX 486
+E + G D S+Y T + DG +IP+ IV++K +KLDGS
Sbjct: 423 REVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKG-IKLDGS--HPAFLYGYGGFNIS 479
Query: 487 XXXNSIASRLTILDR-GIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIK 545
N SRL + G + A+A++RGG E G+ WH+ G L NK+N F DF A+YLIK
Sbjct: 480 ITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIK 539
Query: 546 SNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVL 590
Y S L I GGS GG+L+ N RP+LF +A V +D+L
Sbjct: 540 EGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDML 584
>pdb|1QFS|A Chain A, Prolyl Oligopeptidase From Porcine Muscle With Covalently
Bound Inhibitor Z-Pro-Prolinal
pdb|1H2W|A Chain A, Prolyl Oligopeptidase From Porcine Brain
pdb|3EQ7|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ8|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|3EQ9|A Chain A, Prolyl Oligopeptidase Complexed With
R-Pro-(Decarboxy-Pro)-Type Inhibitors
pdb|2XDW|A Chain A, Inhibition Of Prolyl Oligopeptidase With A Synthetic
Unnatural Dipeptide
pdb|4AMY|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-1
pdb|4AMZ|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-2
pdb|4AN0|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-3
pdb|4AN1|A Chain A, Prolyl Oligopeptidase From Porcine Brain With A Covalently
Bound Inhibitor Ic-4
Length = 710
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
Query: 427 KETILGGFDESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDXXXXXXXXXXXXXXX 486
+E + G D S+Y T + DG +IP+ IV++K +KLDGS
Sbjct: 423 REVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKG-IKLDGS--HPAFLYGYGGFNIS 479
Query: 487 XXXNSIASRLTILDR-GIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIK 545
N SRL + G + A+A++RGG E G+ WH+ G L NK+N F DF A+YLIK
Sbjct: 480 ITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIK 539
Query: 546 SNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVL 590
Y S L I GGS GG+L+ N RP+LF +A V +D+L
Sbjct: 540 EGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDML 584
>pdb|4AX4|A Chain A, Prolyl Oligopeptidase From Porcine Brain, H680a Mutant
Length = 710
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
Query: 427 KETILGGFDESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDXXXXXXXXXXXXXXX 486
+E + G D S+Y T + DG +IP+ IV++K +KLDGS
Sbjct: 423 REVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKG-IKLDGS--HPAFLYGYGGFNIS 479
Query: 487 XXXNSIASRLTILDR-GIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIK 545
N SRL + G + A+A++RGG E G+ WH+ G L NK+N F DF A+YLIK
Sbjct: 480 ITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIK 539
Query: 546 SNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVL 590
Y S L I GGS GG+L+ N RP+LF +A V +D+L
Sbjct: 540 EGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDML 584
>pdb|1H2X|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
pdb|1H2Y|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y473f Mutant
With Covalently Bound Inhibitor Z-Pro-Prolinal
Length = 710
Score = 108 bits (271), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
Query: 427 KETILGGFDESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDXXXXXXXXXXXXXXX 486
+E + G D S+Y T + DG +IP+ IV++K +KLDGS
Sbjct: 423 REVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKG-IKLDGS--HPAFLYGFGGFNIS 479
Query: 487 XXXNSIASRLTILDR-GIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIK 545
N SRL + G + A+A++RGG E G+ WH+ G L NK+N F DF A+YLIK
Sbjct: 480 ITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIK 539
Query: 546 SNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVL 590
Y S L I GGS GG+L+ N RP+LF +A V +D+L
Sbjct: 540 EGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDML 584
>pdb|1VZ2|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Y73c/v427c/c255t
Mutant
Length = 710
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 64/165 (38%), Positives = 87/165 (52%), Gaps = 4/165 (2%)
Query: 427 KETILGGFDESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDXXXXXXXXXXXXXXX 486
+E G D S+Y T + DG +IP+ IV++K +KLDGS
Sbjct: 423 REVTCKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKG-IKLDGS--HPAFLYGYGGFNIS 479
Query: 487 XXXNSIASRLTILDR-GIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIK 545
N SRL + G + A+A++RGG E G+ WH+ G L NK+N F DF A+YLIK
Sbjct: 480 ITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIK 539
Query: 546 SNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVL 590
Y S L I GGS GG+L+ N RP+LF +A V +D+L
Sbjct: 540 EGYTSPKRLTINGGSNGGLLVATCANQRPDLFGCVIAQVGVMDML 584
>pdb|1E8M|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Inhibitor
pdb|1E8N|A Chain A, Prolyl Oligopeptidase From Porcine Brain, Mutant,
Complexed With Peptide
pdb|1UOO|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Arg-Pro
pdb|1UOP|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Gly-Phe-Glu-Pro
pdb|1UOQ|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Glu-Phe-Ser-Pro
pdb|1H2Z|A Chain A, Prolyl Oligopeptidase From Porcine Brain, S554a Mutant
With Bound Peptide Ligand Suc-Gly-Pro
Length = 710
Score = 108 bits (269), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 88/165 (53%), Gaps = 4/165 (2%)
Query: 427 KETILGGFDESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDXXXXXXXXXXXXXXX 486
+E + G D S+Y T + DG +IP+ IV++K +KLDGS
Sbjct: 423 REVTVKGIDASDYQTVQIFYPSKDGTKIPMFIVHKKG-IKLDGS--HPAFLYGYGGFNIS 479
Query: 487 XXXNSIASRLTILDR-GIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIK 545
N SRL + G + A+A++RGG E G+ WH+ G L NK+N F DF A+YLIK
Sbjct: 480 ITPNYSVSRLIFVRHMGGVLAVANIRGGGEYGETWHKGGILANKQNCFDDFQCAAEYLIK 539
Query: 546 SNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVL 590
Y S L I GG+ GG+L+ N RP+LF +A V +D+L
Sbjct: 540 EGYTSPKRLTINGGANGGLLVATCANQRPDLFGCVIAQVGVMDML 584
>pdb|4HVT|A Chain A, Structure Of A Post-Proline Cleaving Enzyme From
Rickettsia Typhi
Length = 711
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/160 (33%), Positives = 87/160 (54%), Gaps = 2/160 (1%)
Query: 431 LGGFDESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDXXXXXXXXXXXXXXXXXXN 490
L FD NYV E K A + DG +IP +VY+K +K DG + +
Sbjct: 439 LYSFDSENYVLEQKEATSFDGVKIPYFLVYKKG-IKFDGKNPTLLEAYGGFQVINAPYFS 497
Query: 491 SIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCS 550
I + + + + G+ +A++RGG E G +WH++ + + ++ F DF A ++ LIK N S
Sbjct: 498 RIKNEVWVKNAGVS-VLANIRGGGEFGPEWHKSAQGIKRQTAFNDFFAVSEELIKQNITS 556
Query: 551 EDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVL 590
+ L I+GGS GG+L+ + RPELF +VP +D++
Sbjct: 557 PEYLGIKGGSNGGLLVSVAMTQRPELFGAVACEVPILDMI 596
>pdb|2D5L|A Chain A, Crystal Structure Of Prolyl Tripeptidyl Aminopeptidase
From Porphyromonas Gingivalis
pdb|2EEP|A Chain A, Prolyl Tripeptidyl Aminopeptidase Complexed With An
Inhibitor
Length = 706
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 511 RGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVL 570
RG +G + + + D + D+L ++ D + + G S GG + ++
Sbjct: 528 RGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLM 587
Query: 571 NMRPELFKVAVADVPSVD 588
++FKV VA P +D
Sbjct: 588 LTHGDVFKVGVAGGPVID 605
>pdb|2Z3W|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a
pdb|2Z3Z|A Chain A, Prolyl Tripeptidyl Aminopeptidase Mutant E636a Complexd
With An Inhibitor
Length = 706
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 34/78 (43%)
Query: 511 RGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVL 570
RG +G + + + D + D+L ++ D + + G S GG + ++
Sbjct: 528 RGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWSYGGFMTTNLM 587
Query: 571 NMRPELFKVAVADVPSVD 588
++FKV VA P +D
Sbjct: 588 LTHGDVFKVGVAGGPVID 605
>pdb|2QR5|A Chain A, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
pdb|2QR5|B Chain B, Aeropyrum Pernix Acylaminoacyl Peptidase, H367a Mutant
Length = 582
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 502 GIIFAIAHVRGGDEKGKQWHENGKLLNK--RNTFTDFIACADYLIKSNYCSEDNLCIEGG 559
G + + RG G++W K++ D A A + +S SE L I G
Sbjct: 389 GFHVVMPNYRGSTGYGEEWRL--KIIGDPCGGELEDVSAAARWARESGLASE--LYIMGY 444
Query: 560 SAGGMLIGAVLNMRPELFKVAVADVPSVD 588
S GG + L M+P LFK VA VD
Sbjct: 445 SYGGYMTLCALTMKPGLFKAGVAGASVVD 473
>pdb|3O4J|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4J|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 502 GIIFAIAHVRGGDEKGKQWHENGKLLNK--RNTFTDFIACADYLIKSNYCSEDNLCIEGG 559
G + + RG G++W K++ D A A + +S SE L I G
Sbjct: 389 GFHVVMPNYRGSTGYGEEWRL--KIIGDPCGGELEDVSAAARWARESGLASE--LYIMGY 444
Query: 560 SAGGMLIGAVLNMRPELFKVAVADVPSVD 588
S GG + L M+P LFK VA VD
Sbjct: 445 SYGGYMTLCALTMKPGLFKAGVAGASVVD 473
>pdb|3O4H|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4H|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4I|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 502 GIIFAIAHVRGGDEKGKQWHENGKLLNK--RNTFTDFIACADYLIKSNYCSEDNLCIEGG 559
G + + RG G++W K++ D A A + +S SE L I G
Sbjct: 389 GFHVVMPNYRGSTGYGEEWRL--KIIGDPCGGELEDVSAAARWARESGLASE--LYIMGY 444
Query: 560 SAGGMLIGAVLNMRPELFKVAVADVPSVD 588
S GG + L M+P LFK VA VD
Sbjct: 445 SYGGYMTLCALTMKPGLFKAGVAGASVVD 473
>pdb|1VE6|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE6|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
Aeropyrum Pernix K1
pdb|1VE7|A Chain A, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|1VE7|B Chain B, Crystal Structure Of An Acylpeptide HydrolaseESTERASE FROM
AEROPYRUM Pernix K1 In Complex With P-Nitrophenyl
Phosphate
pdb|2HU5|A Chain A, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU5|B Chain B, Binding Of Inhibitors By Acylaminoacyl-Peptidase
pdb|2HU7|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU7|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|3O4G|A Chain A, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|B Chain B, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|C Chain C, Structure And Catalysis Of Acylaminoacyl Peptidase
pdb|3O4G|D Chain D, Structure And Catalysis Of Acylaminoacyl Peptidase
Length = 582
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 502 GIIFAIAHVRGGDEKGKQWHENGKLLNK--RNTFTDFIACADYLIKSNYCSEDNLCIEGG 559
G + + RG G++W K++ D A A + +S SE L I G
Sbjct: 389 GFHVVMPNYRGSTGYGEEWRL--KIIGDPCGGELEDVSAAARWARESGLASE--LYIMGY 444
Query: 560 SAGGMLIGAVLNMRPELFKVAVADVPSVD 588
S GG + L M+P LFK VA VD
Sbjct: 445 SYGGYMTLCALTMKPGLFKAGVAGASVVD 473
>pdb|2QZP|A Chain A, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
pdb|2QZP|B Chain B, Crystal Structure Of Mutation Of An Acylptide
HydrolaseESTERASE FROM AEROPYRUM PERNIX K1
Length = 562
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 502 GIIFAIAHVRGGDEKGKQWHENGKLLNK--RNTFTDFIACADYLIKSNYCSEDNLCIEGG 559
G + + RG G++W K++ D A A + +S SE L I G
Sbjct: 369 GFHVVMPNYRGSTGYGEEWRL--KIIGDPCGGELEDVSAAARWARESGLASE--LYIMGY 424
Query: 560 SAGGMLIGAVLNMRPELFKVAVADVPSVD 588
S GG + L M+P LFK VA VD
Sbjct: 425 SYGGYMTLCALTMKPGLFKAGVAGASVVD 453
>pdb|2DCM|A Chain A, The Crystal Structure Of S603a Mutated Prolyl Tripeptidyl
Aminopeptidase Complexed With Substrate
Length = 706
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 34/78 (43%)
Query: 511 RGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVL 570
RG +G + + + D + D+L ++ D + + G + GG + ++
Sbjct: 528 RGSANRGAAFEQVIHRRLGQTEMADQMCGVDFLKSQSWVDADRIGVHGWAYGGFMTTNLM 587
Query: 571 NMRPELFKVAVADVPSVD 588
++FKV VA P +D
Sbjct: 588 LTHGDVFKVGVAGGPVID 605
>pdb|2HU8|A Chain A, Binding Of Inhibitors By Acylaminoacyl Peptidase
pdb|2HU8|B Chain B, Binding Of Inhibitors By Acylaminoacyl Peptidase
Length = 582
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 6/89 (6%)
Query: 502 GIIFAIAHVRGGDEKGKQWHENGKLLNK--RNTFTDFIACADYLIKSNYCSEDNLCIEGG 559
G + + RG G++W K++ D A A + +S SE L I G
Sbjct: 389 GFHVVMPNYRGSTGYGEEWRL--KIIGDPCGGELEDVSAAARWARESGLASE--LYIMGY 444
Query: 560 SAGGMLIGAVLNMRPELFKVAVADVPSVD 588
+ GG + L M+P LFK VA VD
Sbjct: 445 AYGGYMTLCALTMKPGLFKAGVAGASVVD 473
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,871,387
Number of Sequences: 62578
Number of extensions: 739367
Number of successful extensions: 1607
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1541
Number of HSP's gapped (non-prelim): 50
length of query: 623
length of database: 14,973,337
effective HSP length: 105
effective length of query: 518
effective length of database: 8,402,647
effective search space: 4352571146
effective search space used: 4352571146
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)