Query 044808
Match_columns 623
No_of_seqs 384 out of 2614
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 06:58:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1770 PtrB Protease II [Amin 100.0 6E-115 1E-119 908.5 60.2 560 8-601 4-576 (682)
2 PRK10115 protease 2; Provision 100.0 8.9E-98 2E-102 836.4 71.8 570 10-611 2-583 (686)
3 KOG2237 Predicted serine prote 100.0 2.3E-95 5E-100 753.7 41.0 568 7-601 3-598 (712)
4 COG1505 Serine proteases of th 100.0 2.9E-68 6.2E-73 550.3 38.9 515 27-593 2-541 (648)
5 PF02897 Peptidase_S9_N: Proly 100.0 7.5E-60 1.6E-64 508.0 47.2 388 10-427 1-413 (414)
6 COG1506 DAP2 Dipeptidyl aminop 100.0 8.5E-37 1.8E-41 341.7 41.1 421 152-599 62-519 (620)
7 KOG2281 Dipeptidyl aminopeptid 100.0 9.2E-32 2E-36 278.5 25.8 266 340-620 517-807 (867)
8 KOG2100 Dipeptidyl aminopeptid 99.9 1.3E-24 2.8E-29 245.4 40.4 288 288-590 347-647 (755)
9 PF00326 Peptidase_S9: Prolyl 99.9 4.5E-22 9.7E-27 194.3 8.7 110 487-598 1-110 (213)
10 TIGR02800 propeller_TolB tol-p 99.7 1.7E-14 3.7E-19 155.7 24.8 272 50-359 118-397 (417)
11 PRK04792 tolB translocation pr 99.6 1.1E-12 2.3E-17 142.2 31.9 200 152-363 220-427 (448)
12 COG3458 Acetyl esterase (deace 99.6 3.5E-15 7.5E-20 142.0 10.3 147 434-589 49-212 (321)
13 PF02129 Peptidase_S15: X-Pro 99.6 4E-15 8.6E-20 150.9 9.6 139 450-597 1-146 (272)
14 PRK04043 tolB translocation pr 99.6 2.5E-12 5.5E-17 137.5 30.5 198 153-359 191-400 (419)
15 PF05448 AXE1: Acetyl xylan es 99.6 2.3E-14 5E-19 147.0 13.2 149 436-593 51-216 (320)
16 PRK05137 tolB translocation pr 99.5 4.6E-12 1E-16 137.3 28.9 197 152-360 204-413 (435)
17 TIGR00976 /NonD putative hydro 99.5 6.5E-14 1.4E-18 155.9 14.5 137 446-594 1-139 (550)
18 PRK00178 tolB translocation pr 99.5 8.5E-12 1.8E-16 135.2 29.9 198 152-359 201-406 (430)
19 PRK05077 frsA fermentation/res 99.5 1.4E-13 3E-18 147.2 15.7 137 438-588 165-301 (414)
20 PRK01029 tolB translocation pr 99.5 6.2E-12 1.4E-16 135.3 28.2 201 153-360 188-404 (428)
21 PRK02889 tolB translocation pr 99.5 2.6E-12 5.6E-17 138.8 24.2 198 152-359 198-403 (427)
22 PRK03629 tolB translocation pr 99.5 2.9E-11 6.3E-16 130.5 32.3 197 152-359 201-406 (429)
23 PRK01029 tolB translocation pr 99.5 1E-11 2.3E-16 133.6 28.0 248 154-425 141-410 (428)
24 TIGR01840 esterase_phb esteras 99.5 9.6E-14 2.1E-18 135.3 10.2 126 457-587 2-130 (212)
25 PRK04043 tolB translocation pr 99.5 2.3E-11 5E-16 130.1 29.2 237 162-425 155-407 (419)
26 PRK04922 tolB translocation pr 99.5 2.6E-11 5.6E-16 131.4 28.8 197 152-359 206-411 (433)
27 PRK05137 tolB translocation pr 99.5 3.3E-11 7.1E-16 130.7 28.8 241 160-424 164-418 (435)
28 PRK13604 luxD acyl transferase 99.4 1.2E-12 2.5E-17 131.6 13.5 140 440-594 8-148 (307)
29 PF12715 Abhydrolase_7: Abhydr 99.4 6.3E-13 1.4E-17 135.0 11.6 142 437-583 84-256 (390)
30 PRK10162 acetyl esterase; Prov 99.4 4E-12 8.7E-17 131.7 14.2 132 439-589 55-197 (318)
31 PRK03629 tolB translocation pr 99.4 2.8E-10 6E-15 123.0 28.3 237 162-423 164-411 (429)
32 PRK02889 tolB translocation pr 99.4 3.8E-10 8.2E-15 121.9 29.1 232 162-419 164-404 (427)
33 PRK01742 tolB translocation pr 99.4 2.6E-10 5.6E-15 123.4 27.5 192 152-359 206-404 (429)
34 COG2936 Predicted acyl esteras 99.4 2.3E-12 5E-17 137.6 11.1 145 439-593 17-165 (563)
35 PRK00178 tolB translocation pr 99.4 3.6E-10 7.8E-15 122.5 28.0 247 149-421 151-409 (430)
36 PRK04922 tolB translocation pr 99.4 3.5E-10 7.5E-15 122.6 27.8 238 161-423 167-416 (433)
37 TIGR02821 fghA_ester_D S-formy 99.3 2.1E-11 4.6E-16 123.8 15.2 146 441-590 13-176 (275)
38 PRK10566 esterase; Provisional 99.3 1.2E-11 2.6E-16 123.6 12.7 116 453-579 11-134 (249)
39 PRK04792 tolB translocation pr 99.3 1.2E-09 2.6E-14 118.6 29.1 234 162-421 183-428 (448)
40 PLN02298 hydrolase, alpha/beta 99.3 2.2E-11 4.8E-16 127.2 15.0 146 435-589 26-171 (330)
41 PRK05371 x-prolyl-dipeptidyl a 99.3 2.7E-11 5.7E-16 138.2 16.8 154 433-593 162-379 (767)
42 PF00930 DPPIV_N: Dipeptidyl p 99.3 2.7E-10 5.9E-15 119.9 22.9 238 152-410 45-353 (353)
43 PLN02442 S-formylglutathione h 99.3 1.9E-11 4.2E-16 124.4 13.0 147 440-590 17-181 (283)
44 PF10503 Esterase_phd: Esteras 99.3 1.1E-11 2.3E-16 119.7 10.2 126 456-586 3-131 (220)
45 COG3509 LpqC Poly(3-hydroxybut 99.3 1.4E-11 3E-16 119.9 10.3 129 449-587 42-179 (312)
46 cd00312 Esterase_lipase Estera 99.3 8.9E-12 1.9E-16 137.5 9.0 129 454-589 79-215 (493)
47 COG0412 Dienelactone hydrolase 99.2 6.3E-11 1.4E-15 116.7 11.4 136 442-587 3-146 (236)
48 COG0657 Aes Esterase/lipase [L 99.2 9.8E-11 2.1E-15 121.3 11.7 131 447-591 57-195 (312)
49 TIGR02800 propeller_TolB tol-p 99.2 2.1E-08 4.6E-13 108.2 28.7 237 158-419 152-398 (417)
50 PLN02385 hydrolase; alpha/beta 99.1 7.3E-10 1.6E-14 116.6 14.0 140 439-588 59-198 (349)
51 PRK01742 tolB translocation pr 99.1 2.8E-08 6E-13 107.6 26.1 184 161-360 168-362 (429)
52 KOG1515 Arylacetamide deacetyl 99.1 8.3E-10 1.8E-14 113.0 12.4 136 441-592 63-212 (336)
53 PF06500 DUF1100: Alpha/beta h 99.1 4.3E-10 9.4E-15 116.6 10.3 139 438-591 162-301 (411)
54 TIGR03101 hydr2_PEP hydrolase, 99.1 1.7E-09 3.7E-14 108.1 13.7 133 443-590 2-137 (266)
55 COG0823 TolB Periplasmic compo 99.0 5.7E-09 1.2E-13 111.1 17.1 199 151-359 194-402 (425)
56 PLN00021 chlorophyllase 99.0 3.1E-09 6.7E-14 109.1 14.5 119 452-589 37-168 (313)
57 PF01738 DLH: Dienelactone hyd 99.0 8.5E-10 1.8E-14 108.0 8.7 123 454-585 1-130 (218)
58 PRK10985 putative hydrolase; P 99.0 4.4E-09 9.6E-14 109.5 13.7 137 443-590 33-171 (324)
59 COG0823 TolB Periplasmic compo 99.0 6.5E-08 1.4E-12 103.1 22.3 180 172-360 174-359 (425)
60 PF07859 Abhydrolase_3: alpha/ 99.0 9.2E-10 2E-14 107.0 6.9 104 474-589 1-112 (211)
61 PHA02857 monoglyceride lipase; 98.9 6.3E-09 1.4E-13 105.6 12.5 129 446-588 5-133 (276)
62 PF12740 Chlorophyllase2: Chlo 98.9 5.5E-09 1.2E-13 102.2 10.3 115 454-587 4-131 (259)
63 PF00930 DPPIV_N: Dipeptidyl p 98.9 3.1E-07 6.8E-12 96.7 22.0 193 153-349 104-350 (353)
64 COG2272 PnbA Carboxylesterase 98.9 6.1E-09 1.3E-13 108.9 8.6 130 448-588 76-218 (491)
65 PLN02872 triacylglycerol lipas 98.8 4.3E-09 9.3E-14 111.5 6.8 149 436-588 39-198 (395)
66 PLN02511 hydrolase 98.8 6.1E-08 1.3E-12 103.3 15.6 140 441-589 71-212 (388)
67 PRK10749 lysophospholipase L2; 98.8 2.4E-08 5.2E-13 104.2 11.8 134 441-588 30-167 (330)
68 COG4099 Predicted peptidase [G 98.8 1.4E-08 2.9E-13 98.5 8.4 131 449-588 169-305 (387)
69 TIGR03100 hydr1_PEP hydrolase, 98.8 8.7E-08 1.9E-12 97.2 14.8 131 442-588 3-135 (274)
70 PF00756 Esterase: Putative es 98.8 7.6E-09 1.6E-13 103.5 6.8 137 451-590 5-153 (251)
71 PF00135 COesterase: Carboxyle 98.8 2.8E-08 6.2E-13 110.8 11.0 129 454-586 109-244 (535)
72 PLN02652 hydrolase; alpha/beta 98.7 1.6E-07 3.5E-12 99.9 13.6 136 440-589 109-247 (395)
73 PRK10439 enterobactin/ferric e 98.6 5.1E-07 1.1E-11 96.3 13.7 135 441-587 180-323 (411)
74 PF12695 Abhydrolase_5: Alpha/ 98.6 2.1E-07 4.6E-12 84.2 9.0 96 473-588 1-96 (145)
75 COG2267 PldB Lysophospholipase 98.6 3.6E-07 7.9E-12 93.4 10.9 136 441-591 9-146 (298)
76 TIGR03866 PQQ_ABC_repeats PQQ- 98.6 8.1E-05 1.8E-09 75.7 28.3 239 153-422 34-283 (300)
77 PRK11460 putative hydrolase; P 98.5 3.7E-07 8.1E-12 90.1 10.2 114 469-587 14-138 (232)
78 KOG1455 Lysophospholipase [Lip 98.5 1.2E-06 2.5E-11 86.4 12.7 138 441-588 27-165 (313)
79 COG1647 Esterase/lipase [Gener 98.5 3.8E-07 8.2E-12 85.4 8.0 101 472-585 16-116 (243)
80 PF12697 Abhydrolase_6: Alpha/ 98.5 7E-07 1.5E-11 86.3 10.5 103 474-590 1-104 (228)
81 COG4188 Predicted dienelactone 98.5 4.9E-07 1.1E-11 91.9 9.5 131 441-575 38-182 (365)
82 PRK00870 haloalkane dehalogena 98.5 3.3E-06 7.1E-11 87.0 15.5 128 441-585 21-148 (302)
83 TIGR03343 biphenyl_bphD 2-hydr 98.5 4.2E-07 9.1E-12 92.3 8.6 106 470-586 29-135 (282)
84 KOG0318 WD40 repeat stress pro 98.5 7.7E-05 1.7E-09 77.7 24.7 191 151-359 192-392 (603)
85 KOG1552 Predicted alpha/beta h 98.5 1.4E-06 3.1E-11 84.0 11.4 137 440-595 34-171 (258)
86 COG4946 Uncharacterized protei 98.5 2.2E-05 4.8E-10 80.6 20.4 241 153-426 40-303 (668)
87 KOG4391 Predicted alpha/beta h 98.5 5.4E-07 1.2E-11 83.6 8.1 136 438-589 51-186 (300)
88 TIGR01250 pro_imino_pep_2 prol 98.4 1.9E-06 4E-11 87.0 12.8 107 470-587 24-131 (288)
89 PF14583 Pectate_lyase22: Olig 98.4 0.00031 6.7E-09 72.6 28.4 199 152-360 38-273 (386)
90 TIGR03695 menH_SHCHC 2-succiny 98.4 1.2E-06 2.5E-11 86.1 10.5 104 472-588 2-106 (251)
91 PLN02211 methyl indole-3-aceta 98.4 2.5E-06 5.4E-11 86.5 12.5 107 468-586 15-121 (273)
92 TIGR01249 pro_imino_pep_1 prol 98.4 2.2E-06 4.7E-11 88.5 12.1 122 445-586 8-129 (306)
93 TIGR03611 RutD pyrimidine util 98.4 1.2E-06 2.7E-11 86.9 9.5 106 469-588 11-116 (257)
94 PF03403 PAF-AH_p_II: Platelet 98.3 6.7E-07 1.5E-11 94.3 6.8 129 451-587 83-262 (379)
95 TIGR02427 protocat_pcaD 3-oxoa 98.3 1.7E-06 3.6E-11 85.3 8.8 102 470-586 12-113 (251)
96 TIGR02658 TTQ_MADH_Hv methylam 98.3 0.00056 1.2E-08 70.9 27.4 236 156-422 52-334 (352)
97 KOG0293 WD40 repeat-containing 98.3 0.0001 2.2E-09 74.6 20.6 237 152-423 227-475 (519)
98 TIGR03866 PQQ_ABC_repeats PQQ- 98.3 0.00022 4.8E-09 72.5 24.1 193 153-363 76-282 (300)
99 TIGR01836 PHA_synth_III_C poly 98.3 3.3E-06 7.3E-11 88.9 10.8 88 493-590 85-174 (350)
100 PF07224 Chlorophyllase: Chlor 98.3 3.7E-06 8E-11 80.8 9.5 135 434-587 9-157 (307)
101 COG2945 Predicted hydrolase of 98.3 4.2E-06 9.1E-11 76.8 9.2 133 441-588 4-138 (210)
102 TIGR01607 PST-A Plasmodium sub 98.3 3.6E-06 7.8E-11 87.8 10.3 138 445-589 1-187 (332)
103 PLN02894 hydrolase, alpha/beta 98.3 7.4E-06 1.6E-10 87.8 12.5 125 444-586 82-210 (402)
104 PRK03204 haloalkane dehalogena 98.3 8.5E-06 1.8E-10 83.2 12.4 102 471-586 34-135 (286)
105 PRK11028 6-phosphogluconolacto 98.3 0.0013 2.9E-08 68.5 29.0 203 153-362 38-261 (330)
106 PF08662 eIF2A: Eukaryotic tra 98.2 6.6E-05 1.4E-09 71.8 17.3 136 154-299 10-163 (194)
107 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.00016 3.5E-09 74.9 21.3 190 154-363 109-333 (352)
108 PF10282 Lactonase: Lactonase, 98.2 0.00035 7.7E-09 73.3 24.3 197 154-359 91-322 (345)
109 PLN02824 hydrolase, alpha/beta 98.2 1E-05 2.2E-10 83.0 12.1 108 471-587 29-137 (294)
110 PRK10673 acyl-CoA esterase; Pr 98.2 5.5E-06 1.2E-10 82.7 9.7 99 469-583 14-112 (255)
111 COG2706 3-carboxymuconate cycl 98.2 0.0019 4.1E-08 65.0 27.1 255 153-426 43-331 (346)
112 PLN02965 Probable pheophorbida 98.2 8.9E-06 1.9E-10 81.5 11.0 101 473-586 5-106 (255)
113 TIGR03056 bchO_mg_che_rel puta 98.2 1.1E-05 2.4E-10 81.4 11.3 104 471-588 28-131 (278)
114 KOG4627 Kynurenine formamidase 98.2 4.7E-06 1E-10 77.0 6.8 129 441-590 45-175 (270)
115 cd00200 WD40 WD40 domain, foun 98.2 0.0029 6.3E-08 62.6 28.0 192 151-360 11-208 (289)
116 cd00707 Pancreat_lipase_like P 98.1 9.7E-06 2.1E-10 82.1 9.9 115 468-588 33-148 (275)
117 TIGR01392 homoserO_Ac_trn homo 98.1 8.3E-06 1.8E-10 85.9 9.5 113 471-587 31-162 (351)
118 PF08450 SGL: SMP-30/Gluconola 98.1 0.0034 7.4E-08 62.4 27.3 222 154-403 4-244 (246)
119 PF02230 Abhydrolase_2: Phosph 98.1 3.5E-06 7.7E-11 82.2 5.4 116 469-590 12-143 (216)
120 PRK03592 haloalkane dehalogena 98.1 2E-05 4.2E-10 80.8 11.2 101 471-586 27-127 (295)
121 PRK14875 acetoin dehydrogenase 98.1 2.5E-05 5.4E-10 82.8 12.2 102 470-586 130-231 (371)
122 PF10282 Lactonase: Lactonase, 98.1 0.00025 5.4E-09 74.5 19.3 157 154-317 148-327 (345)
123 PRK06489 hypothetical protein; 98.1 2.7E-05 5.9E-10 82.3 12.1 109 471-586 69-188 (360)
124 KOG0291 WD40-repeat-containing 98.1 0.00052 1.1E-08 74.6 21.1 194 149-359 350-550 (893)
125 PLN03087 BODYGUARD 1 domain co 98.0 5.3E-05 1.2E-09 82.1 13.5 122 448-586 182-308 (481)
126 TIGR02240 PHA_depoly_arom poly 98.0 2.5E-05 5.4E-10 79.2 10.4 119 449-588 9-127 (276)
127 TIGR01738 bioH putative pimelo 98.0 1.6E-05 3.4E-10 78.0 8.6 95 472-586 5-99 (245)
128 KOG3101 Esterase D [General fu 98.0 3.3E-06 7.1E-11 78.2 3.3 136 452-590 26-179 (283)
129 PF02239 Cytochrom_D1: Cytochr 98.0 0.0021 4.6E-08 67.9 25.0 247 154-421 41-305 (369)
130 KOG1516 Carboxylesterase and r 98.0 9.1E-06 2E-10 91.0 7.5 135 448-589 93-234 (545)
131 PF14583 Pectate_lyase22: Olig 98.0 0.0024 5.3E-08 66.1 24.2 159 155-318 86-276 (386)
132 PF08662 eIF2A: Eukaryotic tra 98.0 0.00016 3.6E-09 69.1 14.8 97 152-256 62-163 (194)
133 KOG0279 G protein beta subunit 98.0 0.0018 4E-08 62.7 21.5 193 150-360 64-263 (315)
134 KOG0293 WD40 repeat-containing 98.0 0.00021 4.6E-09 72.4 15.8 193 150-363 270-473 (519)
135 COG0429 Predicted hydrolase of 98.0 7.1E-05 1.5E-09 75.0 12.3 130 445-590 53-188 (345)
136 PRK08775 homoserine O-acetyltr 98.0 5.2E-05 1.1E-09 79.6 12.1 78 498-587 95-173 (343)
137 KOG2314 Translation initiation 98.0 0.0013 2.9E-08 69.2 21.6 197 153-359 309-525 (698)
138 PF03583 LIP: Secretory lipase 98.0 1.9E-05 4.2E-10 80.4 8.2 96 494-595 18-121 (290)
139 COG2819 Predicted hydrolase of 98.0 7E-05 1.5E-09 73.2 11.4 54 536-589 120-174 (264)
140 KOG0318 WD40 repeat stress pro 98.0 0.0015 3.2E-08 68.4 21.3 199 150-359 60-308 (603)
141 PF10340 DUF2424: Protein of u 98.0 4.7E-05 1E-09 78.7 10.4 120 456-590 108-238 (374)
142 COG2706 3-carboxymuconate cycl 97.9 0.00074 1.6E-08 67.9 18.3 159 154-317 149-326 (346)
143 PRK11126 2-succinyl-6-hydroxy- 97.9 4.6E-05 1E-09 75.4 10.0 98 472-586 3-101 (242)
144 PRK11028 6-phosphogluconolacto 97.9 0.00091 2E-08 69.7 19.9 156 154-316 130-308 (330)
145 PTZ00421 coronin; Provisional 97.9 0.0059 1.3E-07 66.9 26.4 199 151-360 77-291 (493)
146 cd00200 WD40 WD40 domain, foun 97.9 0.0074 1.6E-07 59.6 25.1 192 151-360 53-250 (289)
147 PLN02578 hydrolase 97.9 6.1E-05 1.3E-09 79.4 10.0 95 472-585 87-185 (354)
148 KOG3847 Phospholipase A2 (plat 97.9 3.3E-05 7.1E-10 76.0 7.2 115 467-586 114-274 (399)
149 PRK13616 lipoprotein LpqB; Pro 97.9 0.0011 2.4E-08 73.9 20.3 151 151-317 351-530 (591)
150 KOG0266 WD40 repeat-containing 97.9 0.0037 7.9E-08 68.3 24.1 194 149-360 203-410 (456)
151 KOG0272 U4/U6 small nuclear ri 97.9 0.00036 7.7E-09 71.1 14.6 149 150-310 262-416 (459)
152 PRK07581 hypothetical protein; 97.9 4.9E-05 1.1E-09 79.6 9.0 107 470-585 40-157 (339)
153 KOG2624 Triglyceride lipase-ch 97.8 0.0001 2.2E-09 77.6 10.7 147 435-589 42-201 (403)
154 PF02239 Cytochrom_D1: Cytochr 97.8 0.0073 1.6E-07 63.8 24.7 244 153-422 81-351 (369)
155 PF08840 BAAT_C: BAAT / Acyl-C 97.8 3.5E-05 7.6E-10 74.9 6.6 55 534-589 4-58 (213)
156 KOG2055 WD40 repeat protein [G 97.8 0.00052 1.1E-08 70.6 15.1 199 148-354 302-509 (514)
157 KOG1273 WD40 repeat protein [G 97.8 0.0021 4.5E-08 63.3 18.3 186 153-358 27-225 (405)
158 PRK10349 carboxylesterase BioH 97.8 9.9E-05 2.1E-09 73.9 9.8 94 472-585 14-107 (256)
159 PTZ00420 coronin; Provisional 97.8 0.012 2.5E-07 65.4 26.5 198 151-360 76-294 (568)
160 KOG0271 Notchless-like WD40 re 97.8 0.00015 3.2E-09 72.8 10.6 94 151-252 369-467 (480)
161 PRK00175 metX homoserine O-ace 97.8 9.9E-05 2.1E-09 78.6 10.0 112 471-586 48-181 (379)
162 KOG1838 Alpha/beta hydrolase [ 97.8 0.00027 5.9E-09 73.4 12.6 137 441-589 93-237 (409)
163 KOG1553 Predicted alpha/beta h 97.8 0.00011 2.4E-09 73.0 9.1 134 441-590 214-348 (517)
164 PRK11071 esterase YqiA; Provis 97.8 0.00011 2.3E-09 70.2 8.9 91 472-590 2-96 (190)
165 KOG0266 WD40 repeat-containing 97.8 0.0031 6.8E-08 68.8 21.5 196 149-360 159-365 (456)
166 KOG0275 Conserved WD40 repeat- 97.8 0.00081 1.8E-08 66.1 14.6 195 152-365 216-427 (508)
167 PLN02679 hydrolase, alpha/beta 97.7 0.00014 2.9E-09 77.0 9.9 102 471-586 88-190 (360)
168 PF00561 Abhydrolase_1: alpha/ 97.7 0.00011 2.4E-09 71.5 8.0 78 503-586 1-78 (230)
169 KOG4497 Uncharacterized conser 97.7 0.00071 1.5E-08 66.9 13.1 138 155-301 14-155 (447)
170 COG4946 Uncharacterized protei 97.7 0.0016 3.5E-08 67.3 16.1 140 155-301 365-510 (668)
171 KOG0315 G-protein beta subunit 97.7 0.0042 9E-08 59.4 17.6 153 151-312 42-245 (311)
172 PF02897 Peptidase_S9_N: Proly 97.6 0.049 1.1E-06 58.7 28.4 240 86-360 133-405 (414)
173 PLN02980 2-oxoglutarate decarb 97.6 0.00042 9.1E-09 86.5 13.5 139 435-585 1340-1478(1655)
174 COG0400 Predicted esterase [Ge 97.6 0.00021 4.6E-09 68.5 8.4 117 468-589 15-136 (207)
175 KOG4409 Predicted hydrolase/ac 97.6 0.00038 8.2E-09 70.3 9.9 103 469-585 89-193 (365)
176 TIGR03230 lipo_lipase lipoprot 97.6 0.00052 1.1E-08 73.2 11.5 112 469-586 39-153 (442)
177 KOG4178 Soluble epoxide hydrol 97.6 0.00065 1.4E-08 68.3 11.5 103 469-583 42-144 (322)
178 PLN03084 alpha/beta hydrolase 97.6 0.0002 4.3E-09 76.0 8.1 122 448-587 111-232 (383)
179 PF05677 DUF818: Chlamydia CHL 97.6 0.0006 1.3E-08 68.7 10.8 137 440-593 111-261 (365)
180 COG4757 Predicted alpha/beta h 97.5 0.00017 3.6E-09 68.3 6.2 128 444-583 8-135 (281)
181 PF06342 DUF1057: Alpha/beta h 97.5 0.0041 8.9E-08 61.3 15.5 122 441-575 6-127 (297)
182 PTZ00420 coronin; Provisional 97.5 0.27 5.9E-06 54.7 33.4 193 156-360 33-249 (568)
183 PF08538 DUF1749: Protein of u 97.5 0.0003 6.6E-09 70.6 7.7 112 471-593 33-154 (303)
184 KOG2564 Predicted acetyltransf 97.5 0.00056 1.2E-08 66.6 8.9 116 441-572 50-166 (343)
185 KOG0291 WD40-repeat-containing 97.4 0.12 2.5E-06 57.0 26.8 236 150-420 308-552 (893)
186 PF06433 Me-amine-dh_H: Methyl 97.4 0.034 7.3E-07 56.8 21.5 251 133-422 19-324 (342)
187 PTZ00421 coronin; Provisional 97.4 0.016 3.4E-07 63.7 20.8 146 150-301 126-281 (493)
188 PRK05855 short chain dehydroge 97.4 0.00054 1.2E-08 77.3 9.3 106 447-572 8-114 (582)
189 TIGR03502 lipase_Pla1_cef extr 97.3 0.001 2.2E-08 75.6 10.6 99 470-572 448-575 (792)
190 COG2382 Fes Enterochelin ester 97.3 0.0005 1.1E-08 68.3 6.5 127 453-590 81-215 (299)
191 PRK10115 protease 2; Provision 97.3 0.4 8.7E-06 55.1 30.7 197 154-360 176-395 (686)
192 PRK13616 lipoprotein LpqB; Pro 97.3 0.0072 1.6E-07 67.5 16.2 138 152-301 399-559 (591)
193 PF05577 Peptidase_S28: Serine 97.3 0.001 2.2E-08 72.3 9.1 114 471-589 29-150 (434)
194 KOG1407 WD40 repeat protein [F 97.3 0.071 1.5E-06 51.6 20.1 137 151-299 66-209 (313)
195 TIGR01838 PHA_synth_I poly(R)- 97.2 0.0022 4.8E-08 70.4 11.2 88 494-589 212-304 (532)
196 KOG1446 Histone H3 (Lys4) meth 97.2 0.28 6.1E-06 48.8 27.3 241 151-424 16-268 (311)
197 KOG0271 Notchless-like WD40 re 97.2 0.0067 1.5E-07 61.3 13.3 68 152-224 118-190 (480)
198 COG0627 Predicted esterase [Ge 97.2 0.0013 2.7E-08 67.5 8.1 126 468-596 51-196 (316)
199 KOG1446 Histone H3 (Lys4) meth 97.2 0.033 7.2E-07 55.1 17.4 156 150-317 101-265 (311)
200 KOG2139 WD40 repeat protein [G 97.2 0.0049 1.1E-07 61.9 11.8 111 148-268 194-310 (445)
201 PLN00181 protein SPA1-RELATED; 97.1 0.15 3.4E-06 59.8 26.1 191 151-359 485-690 (793)
202 PF06433 Me-amine-dh_H: Methyl 97.1 0.04 8.7E-07 56.2 18.0 198 152-363 97-323 (342)
203 COG3386 Gluconolactonase [Carb 97.1 0.19 4E-06 51.6 23.0 231 154-409 29-280 (307)
204 KOG0645 WD40 repeat protein [G 97.0 0.16 3.4E-06 49.5 20.4 155 149-314 61-229 (312)
205 KOG0973 Histone transcription 97.0 0.015 3.2E-07 66.2 15.2 139 149-297 69-236 (942)
206 PTZ00472 serine carboxypeptida 97.0 0.0056 1.2E-07 66.6 11.5 137 451-593 60-222 (462)
207 KOG0973 Histone transcription 96.9 0.016 3.4E-07 66.0 14.4 112 151-268 131-252 (942)
208 KOG0272 U4/U6 small nuclear ri 96.9 0.014 3E-07 59.9 12.6 186 150-354 218-415 (459)
209 KOG0650 WD40 repeat nucleolar 96.9 0.033 7.2E-07 59.6 15.5 194 151-360 402-638 (733)
210 KOG2048 WD40 repeat protein [G 96.9 0.03 6.4E-07 60.7 15.2 155 148-315 381-549 (691)
211 KOG0305 Anaphase promoting com 96.8 0.18 3.9E-06 54.3 21.1 195 150-360 218-420 (484)
212 KOG0315 G-protein beta subunit 96.8 0.023 4.9E-07 54.5 12.8 116 149-272 167-291 (311)
213 COG0596 MhpC Predicted hydrola 96.8 0.0041 8.9E-08 60.7 8.5 102 471-588 21-124 (282)
214 COG5354 Uncharacterized protei 96.8 0.21 4.5E-06 52.8 20.8 193 154-359 136-348 (561)
215 KOG0286 G-protein beta subunit 96.8 0.54 1.2E-05 46.4 22.3 193 151-360 57-260 (343)
216 KOG1274 WD40 repeat protein [G 96.8 0.012 2.5E-07 65.9 12.3 112 150-270 139-263 (933)
217 KOG0279 G protein beta subunit 96.8 0.011 2.3E-07 57.6 10.4 99 151-254 194-301 (315)
218 PF11144 DUF2920: Protein of u 96.7 0.014 3.1E-07 60.7 11.3 130 453-588 21-220 (403)
219 KOG1407 WD40 repeat protein [F 96.7 0.16 3.5E-06 49.2 17.3 188 151-359 22-219 (313)
220 TIGR02171 Fb_sc_TIGR02171 Fibr 96.7 0.11 2.4E-06 59.3 18.7 115 162-280 319-453 (912)
221 KOG1454 Predicted hydrolase/ac 96.7 0.0072 1.6E-07 62.7 8.9 100 469-581 56-157 (326)
222 KOG0296 Angio-associated migra 96.6 0.52 1.1E-05 47.8 20.8 113 150-272 107-223 (399)
223 PF10647 Gmad1: Lipoprotein Lp 96.5 0.55 1.2E-05 46.8 21.1 118 150-269 24-144 (253)
224 KOG0263 Transcription initiati 96.5 0.097 2.1E-06 57.8 16.4 188 152-359 454-649 (707)
225 PF02273 Acyl_transf_2: Acyl t 96.5 0.019 4.2E-07 55.2 9.7 130 447-594 8-141 (294)
226 PF12146 Hydrolase_4: Putative 96.5 0.0085 1.8E-07 48.1 6.3 58 451-517 1-58 (79)
227 COG3391 Uncharacterized conser 96.5 0.54 1.2E-05 50.0 22.0 197 153-360 77-284 (381)
228 PRK06765 homoserine O-acetyltr 96.5 0.013 2.7E-07 62.4 9.3 83 501-585 98-194 (389)
229 KOG2055 WD40 repeat protein [G 96.4 0.063 1.4E-06 55.8 13.3 143 148-301 256-409 (514)
230 PF09752 DUF2048: Uncharacteri 96.4 0.028 6.2E-07 57.5 10.7 115 455-581 78-204 (348)
231 PLN00181 protein SPA1-RELATED; 96.3 1.3 2.7E-05 52.2 25.9 139 152-301 535-681 (793)
232 KOG0305 Anaphase promoting com 96.3 0.42 9.2E-06 51.5 19.7 205 135-363 168-379 (484)
233 KOG0772 Uncharacterized conser 96.3 0.51 1.1E-05 50.0 19.4 251 148-419 166-446 (641)
234 KOG1273 WD40 repeat protein [G 96.3 0.5 1.1E-05 47.1 18.3 115 149-272 65-186 (405)
235 PLN02919 haloacid dehalogenase 96.3 0.98 2.1E-05 54.5 24.6 192 153-360 627-889 (1057)
236 TIGR01839 PHA_synth_II poly(R) 96.2 0.036 7.7E-07 60.7 11.1 86 493-589 238-330 (560)
237 KOG4840 Predicted hydrolases o 96.2 0.016 3.5E-07 54.7 7.2 124 472-609 36-164 (299)
238 PF05728 UPF0227: Uncharacteri 96.2 0.023 5E-07 53.8 8.5 95 473-593 1-97 (187)
239 KOG2096 WD40 repeat protein [G 96.2 0.042 9.2E-07 54.5 10.3 110 154-272 233-363 (420)
240 KOG0283 WD40 repeat-containing 96.2 0.49 1.1E-05 52.8 19.6 147 193-359 374-532 (712)
241 PF07433 DUF1513: Protein of u 96.1 1.8 4E-05 43.8 22.8 114 154-272 9-149 (305)
242 KOG0647 mRNA export protein (c 96.1 0.68 1.5E-05 45.9 18.1 188 151-354 29-225 (347)
243 KOG0306 WD40-repeat-containing 96.1 0.26 5.6E-06 54.4 16.5 186 154-358 417-621 (888)
244 PF08450 SGL: SMP-30/Gluconola 96.0 0.74 1.6E-05 45.6 19.2 144 148-299 84-245 (246)
245 KOG4389 Acetylcholinesterase/B 96.0 0.007 1.5E-07 63.5 4.5 114 473-589 137-257 (601)
246 KOG2394 WD40 protein DMR-N9 [G 96.0 0.019 4.1E-07 60.6 7.6 55 151-206 292-350 (636)
247 KOG2096 WD40 repeat protein [G 96.0 0.17 3.8E-06 50.3 13.7 163 136-311 77-257 (420)
248 COG1770 PtrB Protease II [Amin 96.0 2.6 5.7E-05 46.7 23.9 159 199-360 84-257 (682)
249 KOG0286 G-protein beta subunit 96.0 1.8 4E-05 42.8 22.0 255 187-480 54-316 (343)
250 COG2021 MET2 Homoserine acetyl 96.0 0.019 4.1E-07 58.9 7.3 114 469-585 49-180 (368)
251 KOG0295 WD40 repeat-containing 96.0 0.19 4.1E-06 50.9 14.0 115 151-272 237-367 (406)
252 KOG4667 Predicted esterase [Li 95.9 0.088 1.9E-06 49.8 10.8 112 469-593 31-145 (269)
253 KOG0641 WD40 repeat protein [G 95.9 1.6 3.5E-05 41.5 20.1 90 240-338 235-329 (350)
254 KOG0296 Angio-associated migra 95.9 1.4 3.1E-05 44.8 19.8 151 151-317 66-223 (399)
255 KOG0275 Conserved WD40 repeat- 95.9 0.15 3.3E-06 50.6 12.7 185 152-353 309-505 (508)
256 KOG0772 Uncharacterized conser 95.9 0.31 6.8E-06 51.5 15.5 161 149-316 268-447 (641)
257 PRK02888 nitrous-oxide reducta 95.8 1.3 2.8E-05 49.2 20.9 144 156-315 199-352 (635)
258 PF00450 Peptidase_S10: Serine 95.8 0.07 1.5E-06 57.4 11.4 144 445-592 17-186 (415)
259 KOG0639 Transducin-like enhanc 95.8 0.097 2.1E-06 54.9 11.4 144 154-313 514-664 (705)
260 KOG0645 WD40 repeat protein [G 95.7 2.3 5E-05 41.8 22.9 189 151-355 16-223 (312)
261 PF01674 Lipase_2: Lipase (cla 95.7 0.044 9.5E-07 53.2 8.3 91 471-572 2-95 (219)
262 KOG2314 Translation initiation 95.7 0.66 1.4E-05 49.6 17.2 157 152-315 349-526 (698)
263 KOG0289 mRNA splicing factor [ 95.7 1.4 3E-05 45.9 18.9 151 152-315 306-463 (506)
264 KOG0771 Prolactin regulatory e 95.6 0.4 8.8E-06 49.4 15.0 174 153-338 148-334 (398)
265 PF11339 DUF3141: Protein of u 95.5 0.18 3.9E-06 54.0 12.6 105 469-590 67-179 (581)
266 PF06977 SdiA-regulated: SdiA- 95.5 3 6.4E-05 41.4 20.4 199 133-345 9-239 (248)
267 KOG0278 Serine/threonine kinas 95.5 0.61 1.3E-05 45.0 14.6 187 151-358 102-298 (334)
268 KOG0289 mRNA splicing factor [ 95.5 0.77 1.7E-05 47.7 16.2 117 151-277 349-469 (506)
269 KOG3043 Predicted hydrolase re 95.4 0.012 2.6E-07 55.9 3.2 85 496-586 61-153 (242)
270 PRK07868 acyl-CoA synthetase; 95.4 0.088 1.9E-06 63.4 11.4 107 471-589 67-179 (994)
271 KOG2048 WD40 repeat protein [G 95.4 2.5 5.4E-05 46.4 20.7 136 152-297 28-171 (691)
272 KOG0273 Beta-transducin family 95.3 0.74 1.6E-05 48.3 15.8 115 151-272 361-485 (524)
273 KOG0771 Prolactin regulatory e 95.3 0.37 8E-06 49.7 13.5 117 149-271 186-313 (398)
274 KOG1274 WD40 repeat protein [G 95.3 6.9 0.00015 44.7 24.2 151 153-317 17-171 (933)
275 PLN02733 phosphatidylcholine-s 95.3 0.027 5.8E-07 60.6 5.6 87 488-585 109-199 (440)
276 KOG1063 RNA polymerase II elon 95.3 0.14 3E-06 55.9 10.8 101 149-256 525-637 (764)
277 KOG0643 Translation initiation 95.2 1.8 4E-05 42.3 17.0 118 151-272 54-180 (327)
278 KOG0263 Transcription initiati 95.2 0.35 7.6E-06 53.6 13.7 138 150-297 494-636 (707)
279 PF07519 Tannase: Tannase and 95.2 0.13 2.8E-06 56.2 10.7 133 453-593 16-156 (474)
280 KOG2110 Uncharacterized conser 95.0 0.21 4.5E-06 50.7 10.6 90 130-222 152-249 (391)
281 KOG4378 Nuclear protein COP1 [ 95.0 0.6 1.3E-05 49.2 14.1 111 151-272 166-283 (673)
282 KOG1445 Tumor-specific antigen 95.0 0.094 2E-06 56.5 8.3 112 151-269 679-798 (1012)
283 KOG0310 Conserved WD40 repeat- 94.9 5.9 0.00013 42.0 20.9 223 152-407 71-302 (487)
284 KOG0640 mRNA cleavage stimulat 94.8 1.8 4E-05 43.1 16.1 110 153-270 116-247 (430)
285 KOG2315 Predicted translation 94.8 5.2 0.00011 43.1 20.5 227 154-406 130-376 (566)
286 KOG1408 WD40 repeat protein [F 94.7 0.25 5.5E-06 54.1 11.0 131 131-270 58-197 (1080)
287 KOG3967 Uncharacterized conser 94.7 0.35 7.5E-06 45.6 10.5 121 457-585 89-226 (297)
288 PF07676 PD40: WD40-like Beta 94.7 0.059 1.3E-06 36.5 4.2 19 153-171 12-30 (39)
289 KOG2183 Prolylcarboxypeptidase 94.7 0.13 2.9E-06 53.2 8.4 89 501-589 110-205 (492)
290 KOG4388 Hormone-sensitive lipa 94.7 0.09 2E-06 56.4 7.4 85 470-568 395-485 (880)
291 KOG0319 WD40-repeat-containing 94.7 2.3 4.9E-05 47.2 18.1 189 149-356 192-394 (775)
292 KOG0273 Beta-transducin family 94.7 6.4 0.00014 41.6 20.5 108 151-266 278-388 (524)
293 KOG1445 Tumor-specific antigen 94.7 0.46 9.9E-06 51.5 12.5 152 150-313 628-797 (1012)
294 COG5354 Uncharacterized protei 94.6 7.5 0.00016 41.5 21.1 194 151-359 34-263 (561)
295 KOG2139 WD40 repeat protein [G 94.5 1.7 3.8E-05 44.2 15.5 193 151-359 100-311 (445)
296 KOG0268 Sof1-like rRNA process 94.5 0.36 7.7E-06 49.0 10.6 172 131-313 167-346 (433)
297 KOG2919 Guanine nucleotide-bin 94.5 1.2 2.6E-05 44.7 14.1 195 156-363 118-331 (406)
298 PF07433 DUF1513: Protein of u 94.4 6.4 0.00014 40.0 24.4 182 148-340 49-269 (305)
299 KOG2237 Predicted serine prote 94.4 0.64 1.4E-05 51.0 13.1 76 130-208 107-190 (712)
300 KOG0277 Peroxisomal targeting 94.4 2.8 6.1E-05 40.8 15.9 172 172-359 39-221 (311)
301 PF13360 PQQ_2: PQQ-like domai 94.4 3.4 7.5E-05 40.2 17.8 186 157-363 32-233 (238)
302 KOG1539 WD repeat protein [Gen 94.4 0.14 3E-06 57.1 8.1 66 151-219 578-646 (910)
303 KOG0282 mRNA splicing factor [ 94.3 0.71 1.5E-05 48.5 12.7 150 153-317 303-465 (503)
304 COG3571 Predicted hydrolase of 94.3 0.19 4E-06 45.3 7.4 95 468-571 10-108 (213)
305 KOG2110 Uncharacterized conser 94.3 2.5 5.5E-05 43.2 16.2 142 160-313 96-249 (391)
306 KOG0283 WD40 repeat-containing 94.3 2 4.4E-05 48.1 16.9 187 151-359 371-576 (712)
307 KOG0316 Conserved WD40 repeat- 94.2 3.7 7.9E-05 39.6 16.0 68 241-316 188-259 (307)
308 KOG2182 Hydrolytic enzymes of 94.1 0.25 5.4E-06 52.6 9.2 113 470-587 85-207 (514)
309 PLN02919 haloacid dehalogenase 94.0 3.6 7.7E-05 49.8 20.0 152 154-317 687-891 (1057)
310 KOG0646 WD40 repeat protein [G 94.0 9.5 0.00021 40.3 20.8 191 152-359 84-307 (476)
311 PF05990 DUF900: Alpha/beta hy 93.8 0.34 7.3E-06 47.7 9.1 115 469-591 16-141 (233)
312 KOG0284 Polyadenylation factor 93.7 1.5 3.4E-05 45.2 13.6 191 150-355 181-378 (464)
313 PF10230 DUF2305: Uncharacteri 93.7 0.46 9.9E-06 47.8 10.1 112 471-588 2-123 (266)
314 KOG2315 Predicted translation 93.6 3.3 7.1E-05 44.6 16.3 131 155-300 223-375 (566)
315 COG4947 Uncharacterized protei 93.4 0.036 7.8E-07 50.2 1.4 91 494-592 50-141 (227)
316 PF00151 Lipase: Lipase; Inte 93.4 0.13 2.9E-06 53.3 5.7 112 468-585 68-185 (331)
317 PF11187 DUF2974: Protein of u 93.3 0.2 4.4E-06 48.8 6.6 74 508-582 41-118 (224)
318 KOG1538 Uncharacterized conser 93.3 9.1 0.0002 42.2 19.1 57 148-206 11-72 (1081)
319 KOG2106 Uncharacterized conser 93.3 0.89 1.9E-05 48.1 11.3 93 154-252 412-507 (626)
320 TIGR02171 Fb_sc_TIGR02171 Fibr 93.3 1 2.2E-05 51.8 12.7 56 152-207 352-419 (912)
321 KOG0640 mRNA cleavage stimulat 93.2 1.2 2.7E-05 44.3 11.6 117 148-272 215-338 (430)
322 KOG0278 Serine/threonine kinas 93.0 1.7 3.6E-05 42.2 11.8 111 152-270 187-300 (334)
323 COG3150 Predicted esterase [Ge 92.9 0.31 6.7E-06 44.3 6.5 66 531-600 40-108 (191)
324 KOG1009 Chromatin assembly com 92.9 3.9 8.4E-05 42.4 14.9 102 154-255 128-249 (434)
325 PLN02209 serine carboxypeptida 92.9 0.62 1.3E-05 50.3 10.0 143 444-592 44-217 (437)
326 COG3386 Gluconolactonase [Carb 92.8 5.3 0.00012 41.0 16.3 146 150-301 111-277 (307)
327 KOG0306 WD40-repeat-containing 92.6 5 0.00011 44.8 16.2 151 151-316 456-624 (888)
328 PF07819 PGAP1: PGAP1-like pro 92.5 0.97 2.1E-05 44.2 10.1 48 536-583 66-119 (225)
329 PF07676 PD40: WD40-like Beta 92.5 0.31 6.7E-06 32.9 4.7 28 238-265 10-39 (39)
330 KOG0285 Pleiotropic regulator 92.4 14 0.00031 37.8 20.5 55 151-206 153-211 (460)
331 PRK02888 nitrous-oxide reducta 92.3 2.4 5.1E-05 47.2 13.6 109 154-271 239-353 (635)
332 KOG1009 Chromatin assembly com 92.1 0.36 7.9E-06 49.6 6.6 101 148-255 64-184 (434)
333 KOG0264 Nucleosome remodeling 92.1 8.7 0.00019 40.3 16.5 193 155-359 183-404 (422)
334 PLN03016 sinapoylglucose-malat 92.1 0.84 1.8E-05 49.3 9.9 135 451-591 49-214 (433)
335 KOG0284 Polyadenylation factor 91.9 2.5 5.3E-05 43.8 12.1 186 151-350 140-330 (464)
336 KOG1007 WD repeat protein TSSC 91.8 3.1 6.6E-05 41.3 12.1 113 151-272 125-248 (370)
337 PF10647 Gmad1: Lipoprotein Lp 91.7 3.6 7.8E-05 41.0 13.3 58 151-208 113-185 (253)
338 PF06821 Ser_hydrolase: Serine 91.6 1.5 3.2E-05 40.9 9.7 37 552-588 55-92 (171)
339 KOG0639 Transducin-like enhanc 91.2 9.1 0.0002 40.8 15.6 131 152-297 468-609 (705)
340 KOG0313 Microtubule binding pr 91.2 4.9 0.00011 41.3 13.3 112 149-266 260-375 (423)
341 KOG0282 mRNA splicing factor [ 91.2 1 2.2E-05 47.4 8.7 148 151-312 216-372 (503)
342 KOG0299 U3 snoRNP-associated p 91.1 23 0.0005 37.4 20.8 57 151-208 204-265 (479)
343 KOG0303 Actin-binding protein 91.0 22 0.00047 37.0 17.9 110 153-272 85-206 (472)
344 KOG0265 U5 snRNP-specific prot 90.8 19 0.00042 36.0 17.5 113 151-271 49-165 (338)
345 KOG0319 WD40-repeat-containing 90.8 10 0.00023 42.3 16.2 153 150-315 20-180 (775)
346 KOG2382 Predicted alpha/beta h 90.7 0.66 1.4E-05 47.1 6.7 98 469-577 50-149 (315)
347 PF07082 DUF1350: Protein of u 90.5 1.6 3.4E-05 42.8 8.9 102 456-573 8-111 (250)
348 KOG0307 Vesicle coat complex C 90.4 2.4 5.3E-05 49.2 11.6 178 131-317 90-287 (1049)
349 KOG4497 Uncharacterized conser 90.1 3.2 6.9E-05 41.9 10.6 100 148-256 317-422 (447)
350 KOG1539 WD repeat protein [Gen 89.9 1.3 2.9E-05 49.7 8.7 74 172-254 557-635 (910)
351 KOG0288 WD40 repeat protein Ti 89.6 1.6 3.5E-05 45.1 8.5 98 151-253 343-448 (459)
352 KOG0288 WD40 repeat protein Ti 89.4 0.45 9.9E-06 49.0 4.4 52 152-203 390-447 (459)
353 COG3204 Uncharacterized protei 89.2 26 0.00057 35.2 18.9 169 132-315 72-264 (316)
354 PF00975 Thioesterase: Thioest 89.1 1.1 2.4E-05 43.6 7.0 84 473-572 2-86 (229)
355 KOG4283 Transcription-coupled 89.0 12 0.00027 37.3 13.6 129 133-272 126-279 (397)
356 KOG1963 WD40 repeat protein [G 88.9 5.4 0.00012 45.1 12.6 109 152-271 208-324 (792)
357 PF03959 FSH1: Serine hydrolas 88.5 0.61 1.3E-05 45.2 4.6 53 531-587 81-145 (212)
358 KOG1408 WD40 repeat protein [F 88.5 31 0.00067 38.7 17.4 34 149-182 459-492 (1080)
359 PF03283 PAE: Pectinacetyleste 88.4 0.4 8.7E-06 50.4 3.4 37 534-570 138-174 (361)
360 PRK13613 lipoprotein LpqB; Pro 88.0 49 0.0011 37.4 19.6 162 151-317 364-542 (599)
361 PF04083 Abhydro_lipase: Parti 87.9 1.4 3.1E-05 33.5 5.2 48 437-484 8-56 (63)
362 TIGR03300 assembly_YfgL outer 87.8 40 0.00086 35.5 26.1 251 159-452 103-372 (377)
363 PF04762 IKI3: IKI3 family; I 87.6 16 0.00035 43.6 16.3 25 152-176 123-147 (928)
364 KOG4499 Ca2+-binding protein R 87.5 13 0.00028 36.0 12.4 113 152-272 111-244 (310)
365 KOG0295 WD40 repeat-containing 87.4 38 0.00082 34.9 22.3 55 150-205 109-167 (406)
366 COG3490 Uncharacterized protei 87.2 34 0.00075 34.2 18.2 200 154-364 72-314 (366)
367 KOG1282 Serine carboxypeptidas 87.2 4.1 9E-05 43.9 10.2 145 444-592 49-218 (454)
368 KOG0302 Ribosome Assembly prot 87.0 33 0.00071 35.5 15.6 139 154-301 216-369 (440)
369 KOG2919 Guanine nucleotide-bin 86.7 21 0.00045 36.2 13.7 109 153-271 162-283 (406)
370 PRK11138 outer membrane biogen 86.6 48 0.001 35.3 25.9 247 160-452 119-387 (394)
371 PF05096 Glu_cyclase_2: Glutam 86.1 39 0.00084 33.7 21.4 185 154-358 49-260 (264)
372 PF11768 DUF3312: Protein of u 85.7 8.2 0.00018 42.1 11.3 82 153-237 263-345 (545)
373 COG3391 Uncharacterized conser 85.7 53 0.0011 34.9 26.7 244 154-423 35-288 (381)
374 KOG4227 WD40 repeat protein [G 85.2 25 0.00054 36.4 13.8 112 150-270 57-180 (609)
375 KOG1523 Actin-related protein 85.1 6.3 0.00014 39.7 9.4 128 132-272 93-239 (361)
376 KOG0313 Microtubule binding pr 84.8 52 0.0011 34.1 17.5 188 150-356 194-415 (423)
377 KOG4378 Nuclear protein COP1 [ 84.7 62 0.0013 34.8 17.3 157 150-316 122-282 (673)
378 KOG2984 Predicted hydrolase [G 84.6 0.91 2E-05 42.6 3.2 95 473-577 44-139 (277)
379 KOG2111 Uncharacterized conser 84.0 6.6 0.00014 39.5 9.0 67 151-219 183-256 (346)
380 COG4782 Uncharacterized protei 83.9 4.5 9.7E-05 41.8 8.0 69 531-601 172-254 (377)
381 PF10313 DUF2415: Uncharacteri 83.9 2.9 6.2E-05 29.0 4.5 30 152-181 3-35 (43)
382 KOG0303 Actin-binding protein 83.6 19 0.00041 37.4 12.2 55 152-206 176-234 (472)
383 KOG0290 Conserved WD40 repeat- 83.4 42 0.00092 33.6 14.0 156 151-315 152-319 (364)
384 PF00400 WD40: WD domain, G-be 83.1 2.4 5.2E-05 28.0 4.1 27 151-177 13-39 (39)
385 PF03088 Str_synth: Strictosid 83.0 20 0.00043 29.4 10.0 69 194-268 3-86 (89)
386 COG3319 Thioesterase domains o 82.3 2.8 6.1E-05 41.7 5.9 101 472-591 1-103 (257)
387 COG2939 Carboxypeptidase C (ca 82.0 5.9 0.00013 42.7 8.4 123 468-592 98-248 (498)
388 PRK04940 hypothetical protein; 82.0 4.2 9.2E-05 38.0 6.5 63 552-617 60-125 (180)
389 PF10605 3HBOH: 3HB-oligomer h 82.0 25 0.00055 38.9 13.1 37 554-590 287-324 (690)
390 KOG4328 WD40 protein [Function 81.9 35 0.00076 36.2 13.6 192 151-358 188-398 (498)
391 TIGR03075 PQQ_enz_alc_DH PQQ-d 81.7 93 0.002 34.7 18.5 74 287-364 240-337 (527)
392 KOG1034 Transcriptional repres 81.6 51 0.0011 33.6 14.1 116 148-271 91-213 (385)
393 PF13360 PQQ_2: PQQ-like domai 81.6 40 0.00086 32.5 13.9 111 288-423 32-145 (238)
394 KOG2106 Uncharacterized conser 81.4 3.3 7.1E-05 44.1 6.0 58 149-206 447-509 (626)
395 KOG0294 WD40 repeat-containing 81.2 66 0.0014 32.6 15.3 66 151-222 129-198 (362)
396 PRK13614 lipoprotein LpqB; Pro 81.0 95 0.0021 34.9 17.7 158 151-316 344-520 (573)
397 KOG1920 IkappaB kinase complex 80.6 45 0.00098 39.8 15.2 45 132-177 91-137 (1265)
398 KOG1920 IkappaB kinase complex 80.6 1.4E+02 0.003 36.0 22.3 57 151-207 70-129 (1265)
399 KOG0270 WD40 repeat-containing 80.4 84 0.0018 33.3 16.0 179 161-359 192-404 (463)
400 KOG0265 U5 snRNP-specific prot 80.1 33 0.00071 34.5 12.1 126 149-283 174-309 (338)
401 KOG0650 WD40 repeat nucleolar 80.1 37 0.0008 37.3 13.3 100 240-350 570-673 (733)
402 TIGR01849 PHB_depoly_PhaZ poly 80.0 4 8.7E-05 43.5 6.4 84 493-590 121-211 (406)
403 KOG0641 WD40 repeat protein [G 79.9 38 0.00083 32.4 12.0 114 147-266 229-348 (350)
404 KOG0643 Translation initiation 79.8 67 0.0015 31.9 18.6 188 151-353 12-216 (327)
405 KOG0281 Beta-TrCP (transducin 79.2 31 0.00068 35.2 11.8 203 133-360 219-429 (499)
406 PF06057 VirJ: Bacterial virul 79.1 3.8 8.2E-05 38.6 5.2 75 494-579 21-95 (192)
407 PF12894 Apc4_WD40: Anaphase-p 79.0 6.1 0.00013 28.0 5.1 30 152-182 14-43 (47)
408 KOG1524 WD40 repeat-containing 78.9 25 0.00053 38.1 11.5 56 152-208 107-166 (737)
409 PF02450 LCAT: Lecithin:choles 78.9 3.2 6.9E-05 44.3 5.3 87 488-585 66-158 (389)
410 COG3490 Uncharacterized protei 78.1 80 0.0017 31.8 19.2 77 131-207 91-180 (366)
411 PF06977 SdiA-regulated: SdiA- 77.3 80 0.0017 31.3 18.6 165 183-363 16-203 (248)
412 PF15492 Nbas_N: Neuroblastoma 77.3 2.9 6.2E-05 41.4 4.0 32 153-184 47-78 (282)
413 PRK11138 outer membrane biogen 76.1 1.1E+02 0.0024 32.4 22.8 99 248-363 256-356 (394)
414 KOG0267 Microtubule severing p 76.1 6.1 0.00013 44.0 6.4 110 151-272 72-187 (825)
415 PF01764 Lipase_3: Lipase (cla 75.9 6.2 0.00013 34.9 5.6 53 533-587 47-106 (140)
416 KOG3975 Uncharacterized conser 75.8 41 0.00089 33.1 11.1 128 449-585 8-145 (301)
417 TIGR03300 assembly_YfgL outer 75.7 1.1E+02 0.0024 32.1 16.1 100 248-363 65-166 (377)
418 KOG0269 WD40 repeat-containing 75.6 34 0.00073 38.7 11.8 116 151-272 178-299 (839)
419 KOG0294 WD40 repeat-containing 74.9 1E+02 0.0022 31.4 17.9 188 151-360 85-282 (362)
420 PF06259 Abhydrolase_8: Alpha/ 74.5 9.1 0.0002 35.8 6.4 39 530-572 91-129 (177)
421 KOG1523 Actin-related protein 74.2 37 0.00081 34.4 10.7 113 151-269 12-132 (361)
422 PRK10252 entF enterobactin syn 74.1 16 0.00035 45.6 10.5 97 471-583 1068-1167(1296)
423 PF15492 Nbas_N: Neuroblastoma 73.7 15 0.00034 36.4 7.9 62 155-221 3-73 (282)
424 COG3208 GrsT Predicted thioest 73.3 10 0.00022 37.1 6.5 124 468-611 5-136 (244)
425 KOG0310 Conserved WD40 repeat- 73.1 1.4E+02 0.003 32.1 18.6 112 149-272 110-228 (487)
426 TIGR02604 Piru_Ver_Nterm putat 72.9 1.2E+02 0.0026 31.9 15.4 96 154-256 18-142 (367)
427 PF13449 Phytase-like: Esteras 72.6 1.2E+02 0.0027 31.3 18.5 117 242-359 90-251 (326)
428 PF12048 DUF3530: Protein of u 72.2 51 0.0011 33.9 11.9 135 442-585 63-227 (310)
429 PF05057 DUF676: Putative seri 72.2 5.9 0.00013 38.4 4.9 21 552-572 78-98 (217)
430 KOG0307 Vesicle coat complex C 71.9 10 0.00022 44.3 7.2 139 130-272 138-287 (1049)
431 KOG2100 Dipeptidyl aminopeptid 71.8 17 0.00036 42.4 9.1 53 155-207 102-167 (755)
432 KOG0276 Vesicle coat complex C 71.6 1.7E+02 0.0038 32.6 16.1 138 155-301 61-205 (794)
433 KOG4283 Transcription-coupled 71.3 62 0.0013 32.5 11.3 92 172-267 125-219 (397)
434 KOG0308 Conserved WD40 repeat- 71.1 73 0.0016 35.5 12.8 109 154-272 176-288 (735)
435 PF05694 SBP56: 56kDa selenium 69.9 22 0.00049 37.8 8.6 60 238-299 313-392 (461)
436 KOG2112 Lysophospholipase [Lip 69.7 11 0.00023 35.9 5.7 51 538-588 76-129 (206)
437 KOG0302 Ribosome Assembly prot 69.6 26 0.00057 36.2 8.7 124 136-269 248-378 (440)
438 COG3204 Uncharacterized protei 68.6 1.2E+02 0.0026 30.7 12.8 67 153-222 132-213 (316)
439 KOG1063 RNA polymerase II elon 68.5 11 0.00024 41.8 6.2 58 149-206 572-636 (764)
440 PF13449 Phytase-like: Esteras 68.4 1.2E+02 0.0027 31.3 14.0 120 151-271 86-253 (326)
441 COG1075 LipA Predicted acetylt 68.3 15 0.00033 38.2 7.2 36 551-586 126-163 (336)
442 KOG2931 Differentiation-relate 68.0 25 0.00055 35.4 8.0 135 442-592 23-168 (326)
443 COG1506 DAP2 Dipeptidyl aminop 67.4 2.3E+02 0.005 32.3 21.2 116 238-358 217-343 (620)
444 PF03088 Str_synth: Strictosid 65.5 45 0.00099 27.3 7.9 65 155-221 3-87 (89)
445 COG5276 Uncharacterized conser 65.4 1.6E+02 0.0035 29.8 17.9 105 241-359 91-199 (370)
446 PF09910 DUF2139: Uncharacteri 65.1 46 0.001 33.6 9.2 96 261-363 78-184 (339)
447 KOG0264 Nucleosome remodeling 65.1 1.9E+02 0.0042 30.6 17.0 193 155-360 130-348 (422)
448 KOG2551 Phospholipase/carboxyh 64.9 14 0.00031 35.5 5.5 55 530-589 85-149 (230)
449 KOG4547 WD40 repeat-containing 64.9 52 0.0011 35.9 10.3 98 149-249 144-250 (541)
450 KOG2041 WD40 repeat protein [G 64.5 1.6E+02 0.0034 33.5 13.7 54 151-204 117-173 (1189)
451 KOG1332 Vesicle coat complex C 64.3 81 0.0017 30.9 10.3 99 152-253 152-273 (299)
452 KOG0277 Peroxisomal targeting 64.1 1.6E+02 0.0034 29.2 14.9 150 153-316 64-223 (311)
453 cd00741 Lipase Lipase. Lipase 63.3 12 0.00025 33.9 4.7 24 550-573 26-49 (153)
454 KOG2565 Predicted hydrolases o 62.9 27 0.00059 36.3 7.4 117 450-580 132-257 (469)
455 PF04053 Coatomer_WDAD: Coatom 62.9 1.1E+02 0.0024 33.1 12.7 168 154-345 37-213 (443)
456 KOG0269 WD40 repeat-containing 62.6 2.5E+02 0.0054 32.2 15.1 188 151-349 135-332 (839)
457 PF07995 GSDH: Glucose / Sorbo 62.1 95 0.0021 32.2 11.7 101 154-257 6-133 (331)
458 TIGR03075 PQQ_enz_alc_DH PQQ-d 62.1 2.6E+02 0.0057 31.1 19.9 49 411-463 272-324 (527)
459 PF05096 Glu_cyclase_2: Glutam 61.3 1.8E+02 0.0039 29.0 20.7 162 237-424 45-209 (264)
460 COG3243 PhaC Poly(3-hydroxyalk 60.5 20 0.00044 37.9 6.1 85 493-590 130-220 (445)
461 COG4257 Vgb Streptogramin lyas 60.5 1.9E+02 0.0041 29.1 19.6 175 154-345 108-293 (353)
462 KOG0290 Conserved WD40 repeat- 60.1 2E+02 0.0043 29.1 16.1 204 152-360 47-275 (364)
463 PF15525 DUF4652: Domain of un 59.5 1.6E+02 0.0034 27.8 11.6 78 154-233 62-158 (200)
464 KOG0308 Conserved WD40 repeat- 59.4 35 0.00077 37.8 7.8 98 133-236 195-299 (735)
465 COG1073 Hydrolases of the alph 59.2 19 0.00041 35.8 5.8 54 452-510 31-84 (299)
466 KOG3914 WD repeat protein WDR4 59.0 2.4E+02 0.0051 29.7 14.2 70 287-365 158-228 (390)
467 KOG2394 WD40 protein DMR-N9 [G 58.9 14 0.0003 39.9 4.6 48 151-198 334-384 (636)
468 PRK13615 lipoprotein LpqB; Pro 58.5 62 0.0013 36.2 9.9 73 151-223 418-504 (557)
469 KOG4640 Anaphase-promoting com 57.7 15 0.00031 40.6 4.7 34 153-186 66-99 (665)
470 PRK13615 lipoprotein LpqB; Pro 57.4 3.2E+02 0.0069 30.7 19.7 155 153-317 337-505 (557)
471 COG3545 Predicted esterase of 57.3 1.1E+02 0.0024 28.5 9.6 59 525-586 35-93 (181)
472 PRK05579 bifunctional phosphop 56.7 38 0.00082 36.2 7.7 93 470-573 116-227 (399)
473 PF06028 DUF915: Alpha/beta hy 55.7 33 0.00071 34.2 6.6 114 469-590 10-146 (255)
474 KOG0316 Conserved WD40 repeat- 55.7 2.1E+02 0.0045 28.0 20.2 188 151-364 19-217 (307)
475 TIGR03606 non_repeat_PQQ dehyd 55.7 3.1E+02 0.0066 29.9 15.0 79 188-269 29-124 (454)
476 TIGR02276 beta_rpt_yvtn 40-res 55.5 21 0.00046 23.8 3.8 27 159-185 1-28 (42)
477 KOG3724 Negative regulator of 55.4 15 0.00032 41.8 4.4 45 534-579 157-208 (973)
478 TIGR03032 conserved hypothetic 54.7 1E+02 0.0022 31.6 9.7 74 172-255 186-259 (335)
479 PRK13614 lipoprotein LpqB; Pro 53.7 90 0.0019 35.0 10.2 73 151-223 435-520 (573)
480 KOG2321 WD40 repeat protein [G 52.8 2.9E+02 0.0063 30.6 13.1 70 151-224 177-261 (703)
481 COG4814 Uncharacterized protei 52.6 79 0.0017 31.3 8.3 97 469-572 44-156 (288)
482 cd00216 PQQ_DH Dehydrogenases 51.9 3.6E+02 0.0078 29.6 15.5 146 160-313 297-488 (488)
483 PF11288 DUF3089: Protein of u 50.7 34 0.00073 32.9 5.5 84 501-588 44-138 (207)
484 KOG3914 WD repeat protein WDR4 50.4 3.2E+02 0.007 28.7 12.6 111 150-269 63-181 (390)
485 KOG1524 WD40 repeat-containing 50.0 1.6E+02 0.0036 32.1 10.7 31 150-181 146-176 (737)
486 cd00519 Lipase_3 Lipase (class 49.9 43 0.00094 32.5 6.4 52 533-586 111-167 (229)
487 KOG4328 WD40 protein [Function 49.6 3.6E+02 0.0078 29.0 14.5 149 151-311 236-398 (498)
488 PLN02517 phosphatidylcholine-s 49.5 24 0.00052 39.2 4.8 73 493-572 160-233 (642)
489 PF12566 DUF3748: Protein of u 48.9 15 0.00032 31.2 2.4 19 155-173 73-91 (122)
490 TIGR03606 non_repeat_PQQ dehyd 48.7 3.4E+02 0.0073 29.6 13.3 105 153-258 33-166 (454)
491 PLN02454 triacylglycerol lipas 48.5 29 0.00063 37.0 5.1 40 531-570 207-246 (414)
492 KOG1963 WD40 repeat protein [G 47.5 39 0.00083 38.7 6.1 56 151-208 253-313 (792)
493 KOG2321 WD40 repeat protein [G 47.4 72 0.0016 35.0 7.7 37 148-184 227-263 (703)
494 KOG1916 Nuclear protein, conta 46.8 37 0.0008 39.2 5.7 36 136-177 228-268 (1283)
495 KOG0268 Sof1-like rRNA process 46.7 41 0.0009 34.7 5.6 67 151-219 274-345 (433)
496 KOG0647 mRNA export protein (c 46.7 2E+02 0.0044 29.1 10.2 66 154-223 77-147 (347)
497 TIGR03712 acc_sec_asp2 accesso 46.7 1.9E+02 0.0041 31.5 10.7 124 449-600 273-403 (511)
498 PRK13613 lipoprotein LpqB; Pro 46.4 1.2E+02 0.0027 34.3 9.9 74 150-223 455-541 (599)
499 PF04762 IKI3: IKI3 family; I 45.1 6.3E+02 0.014 30.4 25.8 186 151-339 77-315 (928)
500 KOG0321 WD40 repeat-containing 44.8 5E+02 0.011 29.2 13.7 129 155-290 223-370 (720)
No 1
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-115 Score=908.53 Aligned_cols=560 Identities=41% Similarity=0.687 Sum_probs=529.0
Q ss_pred CCCCCCccCCeEEeeeCcEeccCCcccccCCC-ChhHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhccCCCCCCCcEE
Q 044808 8 LSPPEAKKVPFLMEIFGDKRLDNYHWLRDAGR-DPDVQRYLELENKYAESIMSETNGYEFALFNELKARFKEDDISVPVR 86 (623)
Q Consensus 8 ~~~P~a~~~~~~~~~hg~~~~DpY~WLed~~r-~p~v~~~l~~en~y~~~~l~~~~~l~~~l~~e~~~~~~~~~~s~p~~ 86 (623)
+.||+|+|+|+++++||.+++|+|+||||++| +|+|++||+|||+|+++.|+++++||++|++||+.|+++++.|+|.+
T Consensus 4 p~pP~a~k~~~~~~~hg~~~~D~Y~WlRd~~~~~p~vl~yL~aEN~Yt~~~~a~~~~L~~~if~Ei~~Rik~dd~Svp~~ 83 (682)
T COG1770 4 PLPPIAKKVPTTRTHHGDTRVDDYAWLRDDNWSNPEVLAYLEAENAYTEAVMAHLQPLQKKIFEEIKGRIKEDDLSVPYR 83 (682)
T ss_pred CCCCCccccceeeeecCceeecchHhhhCCcccChHHHHHHHHhhHHHHHhhhhhHHHHHHHHHHHhhhccCcCCCCccc
Confidence 46899999999999999999999999999988 99999999999999999999999999999999999999999999999
Q ss_pred eCCEEEEEEeeCCCceEEEEEEecCCCCCCCcccccCCCCCCCCCceEEeechhhcccCCCCcEEEeeeEECCCCCEEEE
Q 044808 87 VGSHYYYQRRYLSKDYVQYCRRFIPNNEAPPSVYDIMPTGPDDPPEEVIIDEEVIKYKNSLENYRITAFKVSPNNKLVAF 166 (623)
Q Consensus 87 ~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vllD~n~~a~~~~~~~~~l~~~~~SPDG~~lA~ 166 (623)
.|+|+||+|...|++|+++||++..++ ..||+|||+|++|+++ +|++++.+++|||+++|||
T Consensus 84 ~~~~~Yy~r~~~g~~y~~~~R~~~~g~----------------~~eevlLD~n~~A~g~--~f~~Lg~~~~s~D~~~la~ 145 (682)
T COG1770 84 KGPYEYYSRTEEGKEYPIYCRQPDEGG----------------EGEEVLLDVNKEAEGH--DFFSLGAASISPDHNLLAY 145 (682)
T ss_pred cCCeeEEEEecCCCcceeEEeccCCCC----------------CceeEeecchhccCcc--cceeeeeeeeCCCCceEEE
Confidence 999999999999999999999765421 1589999999999999 9999999999999999999
Q ss_pred EEeCc-----eEEEEECCCCCccccccCccce-eEEecCC-eEEEEEeCCCCCC-eEEEEECCCCCcccEEEEeecCCce
Q 044808 167 RENCG-----TVCVIDSETGAPAEKPIQGCLE-FEWAGDE-AFLYTRRNAIAEP-QVWFHKLGEEQSKDTCLYRTREDLF 238 (623)
Q Consensus 167 ~~~~~-----~l~v~dl~tg~~~~~~i~~~~~-~~WspDg-~l~y~~~d~~~~~-~v~~~~lgt~~~~d~lv~~~~~~~~ 238 (623)
+.|.. +|+|+|+++|+.+++.+.++.+ ++|.+|+ +|||++.++.++| +||+|.+|++...+++||+|+++.|
T Consensus 146 s~D~~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f 225 (682)
T COG1770 146 SVDVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRF 225 (682)
T ss_pred EEecccccEEEEEEEecccccccchhhcccccceEEecCCCeEEEEEEcCCCCcceEEEEecCCCCCcceEEEEcCCCcE
Confidence 99875 8999999999999999998765 9999999 8999999998899 9999999998888999999999999
Q ss_pred eEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-ceeecCCCccceeEEEEeeCCEEEE-EeCCCCCCeEEEEEeCCCC
Q 044808 239 DLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-TLWFLPPWHLGIDMFVSHRGNQFFI-RRSDGGFHSDVLTCPVDNT 316 (623)
Q Consensus 239 ~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l~~~~~~~~~~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~ 316 (623)
++++..|.+.+||++..+++.++++++++.+++. .++++.++..+++|.++|.++.||+ ||.++ .+++|++.++ .+
T Consensus 226 ~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh~~d~f~i~sN~~g-knf~l~~ap~-~~ 303 (682)
T COG1770 226 FLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEHGGDRFYILSNADG-KNFKLVRAPV-SA 303 (682)
T ss_pred EEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeeecCcEEEEEecCCC-cceEEEEccC-CC
Confidence 9999999999999999989999999999999988 7899999999999999999999999 99984 8999999998 66
Q ss_pred Cceee--EEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCCCcccccCCceeecCCCceEEEeeeccccCCc
Q 044808 317 FETTV--LIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCISRIHGIRDSQF 394 (623)
Q Consensus 317 ~~~~~--li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~~~~~~~~~~~~~ 394 (623)
....| +|+|.++..|+++.+++++|++.++++|.++|++.+..+ |. ...|.|+++++.. ....+..+
T Consensus 304 ~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~-~~-------~~~i~f~~~ay~~---~l~~~~e~ 372 (682)
T COG1770 304 DKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKT-GE-------ERGIAFDDEAYSA---GLSGNPEF 372 (682)
T ss_pred ChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCC-Cc-------eeeEEecchhhhc---cccCCCCC
Confidence 56677 999999999999999999999999999999999998875 43 2468999988776 34677888
Q ss_pred CCceEEEEeecCCCCCeEEEEECCCCcEEEEEEeeecCCCCCCCceEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEE
Q 044808 395 SSSILRICFYTMRMPFSAYDYDMNTGISVLKKKETILGGFDESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLL 474 (623)
Q Consensus 395 ~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~i 474 (623)
+++.+++.|+|+++|.++|.||+.+++.+++++++++++|++++|+++++|+++.||++||++|+|+++. +.+++.|||
T Consensus 373 ~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~g~dp~~Y~s~riwa~a~dgv~VPVSLvyrkd~-~~~g~~p~l 451 (682)
T COG1770 373 DSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPGGFDPEDYVSRRIWATADDGVQVPVSLVYRKDT-KLDGSAPLL 451 (682)
T ss_pred CCccEEEEeecccccceeEEeeccCCcEEEEEeccCCCCCChhHeEEEEEEEEcCCCcEeeEEEEEeccc-CCCCCCcEE
Confidence 9999999999999999999999999999999999998889999999999999999999999999999997 778999999
Q ss_pred EEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcE
Q 044808 475 LFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNL 554 (623)
Q Consensus 475 l~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri 554 (623)
||+||+||+++.|.|+ ..+++|++||++++++|+||||+.|+.||++|+..+|+|+|+|||+|+++|+++|++++++|
T Consensus 452 LygYGaYG~s~~p~Fs--~~~lSLlDRGfiyAIAHVRGGgelG~~WYe~GK~l~K~NTf~DFIa~a~~Lv~~g~~~~~~i 529 (682)
T COG1770 452 LYGYGAYGISMDPSFS--IARLSLLDRGFVYAIAHVRGGGELGRAWYEDGKLLNKKNTFTDFIAAARHLVKEGYTSPDRI 529 (682)
T ss_pred EEEeccccccCCcCcc--cceeeeecCceEEEEEEeecccccChHHHHhhhhhhccccHHHHHHHHHHHHHcCcCCccce
Confidence 9999999999999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchhhhhhCCCCccc
Q 044808 555 CIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVLTTILFYPRKRD 601 (623)
Q Consensus 555 ~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~ 601 (623)
+++|+||||+|+++++|++|++|+++||+|||+|+++||+|++.+..
T Consensus 530 ~a~GGSAGGmLmGav~N~~P~lf~~iiA~VPFVDvltTMlD~slPLT 576 (682)
T COG1770 530 VAIGGSAGGMLMGAVANMAPDLFAGIIAQVPFVDVLTTMLDPSLPLT 576 (682)
T ss_pred EEeccCchhHHHHHHHhhChhhhhheeecCCccchhhhhcCCCCCCC
Confidence 99999999999999999999999999999999999999999988643
No 2
>PRK10115 protease 2; Provisional
Probab=100.00 E-value=8.9e-98 Score=836.38 Aligned_cols=570 Identities=31% Similarity=0.515 Sum_probs=493.3
Q ss_pred CCCCccCCeEEeeeCcEeccCCcccccCCC-ChhHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhccCCCCCCCcEEeC
Q 044808 10 PPEAKKVPFLMEIFGDKRLDNYHWLRDAGR-DPDVQRYLELENKYAESIMSETNGYEFALFNELKARFKEDDISVPVRVG 88 (623)
Q Consensus 10 ~P~a~~~~~~~~~hg~~~~DpY~WLed~~r-~p~v~~~l~~en~y~~~~l~~~~~l~~~l~~e~~~~~~~~~~s~p~~~g 88 (623)
||.|+|+|+++++||+++.|||+||||.+| +|+|++||++||+||+++|+++.++|++|++||++|+.+++.++|.+.|
T Consensus 2 pP~a~~~~~~~~~hg~~~~DpY~WLed~~r~~~~v~~~l~~en~~t~~~l~~~~~~~~~l~~~~~~~~~~~~~~~p~~~g 81 (686)
T PRK10115 2 LPKAARIPHAMTLHGDTRIDNYYWLRDDTRSQPEVLDYLHQENSYGHRVMASQQALQDRILKEIIDRIPQREVSAPYIKN 81 (686)
T ss_pred cCCCCCCCeeEEeCCCEeccCchHhhCCCCCCHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhhcccccCCCCEEEC
Confidence 688999999999999999999999999644 8999999999999999999998899999999999999999999999999
Q ss_pred CEEEEEEeeCCCceEEEEEEecCCCCCCCcccccCCCCCCCCCceEEeechhhcccCCCCcEEEeeeEECCCCCEEEEEE
Q 044808 89 SHYYYQRRYLSKDYVQYCRRFIPNNEAPPSVYDIMPTGPDDPPEEVIIDEEVIKYKNSLENYRITAFKVSPNNKLVAFRE 168 (623)
Q Consensus 89 ~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vllD~n~~a~~~~~~~~~l~~~~~SPDG~~lA~~~ 168 (623)
+|+||.+..+|+++++|||++..+. +.+.+|+|||+|++++++ +++.++.+.|||||++|||+.
T Consensus 82 ~~~y~~~~~~g~~~~~~~r~~~~~~--------------~~~~~~~llD~n~~a~~~--~~~~l~~~~~Spdg~~la~~~ 145 (686)
T PRK10115 82 GYRYRHIYEPGCEYAIYQRQSAFSE--------------EWDEWETLLDANKRAAHS--EFYTLGGMAITPDNTIMALAE 145 (686)
T ss_pred CEEEEEEEcCCCccEEEEEecCCCC--------------CCCCCEEEEcchhhccCC--CcEEEeEEEECCCCCEEEEEe
Confidence 9999999999999999999864321 113589999999998877 899999999999999999999
Q ss_pred eCc-----eEEEEECCCCCccccccCccce-eEEecCC-eEEEEEeCCC-CCC-eEEEEECCCCCcccEEEEeecCCcee
Q 044808 169 NCG-----TVCVIDSETGAPAEKPIQGCLE-FEWAGDE-AFLYTRRNAI-AEP-QVWFHKLGEEQSKDTCLYRTREDLFD 239 (623)
Q Consensus 169 ~~~-----~l~v~dl~tg~~~~~~i~~~~~-~~WspDg-~l~y~~~d~~-~~~-~v~~~~lgt~~~~d~lv~~~~~~~~~ 239 (623)
|.+ +|+|+|+.+|+.+++.++++.. ++|++|+ +|+|++.++. .++ +||+|++||+++++++||++.++.+.
T Consensus 146 d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~ 225 (686)
T PRK10115 146 DFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFY 225 (686)
T ss_pred cCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEE
Confidence 876 8999999999988878888764 9999999 8999998653 577 99999999998889999998777777
Q ss_pred EEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-ceeecCCCccceeEEEEeeCCEEEE-EeCCCCCCeEEEEEeCCCCC
Q 044808 240 LTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-TLWFLPPWHLGIDMFVSHRGNQFFI-RRSDGGFHSDVLTCPVDNTF 317 (623)
Q Consensus 240 ~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l~~~~~~~~~~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~ 317 (623)
+....+.|++++++.+.+..+++++++++.... .++++.++..+..|.+.+.++.||+ ||.+ +++++|+.+++.+..
T Consensus 226 ~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~tn~~-~~~~~l~~~~~~~~~ 304 (686)
T PRK10115 226 VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLDHYQHRFYLRSNRH-GKNFGLYRTRVRDEQ 304 (686)
T ss_pred EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEEeCCCEEEEEEcCC-CCCceEEEecCCCcc
Confidence 777778899999988888778899998854322 3666777777878887788899999 9987 889999999987543
Q ss_pred ceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCCCcccccCCceeecCCCceEEEeeeccccCCcCCc
Q 044808 318 ETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCISRIHGIRDSQFSSS 397 (623)
Q Consensus 318 ~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~~ 397 (623)
..+.++++.++..|+++.+++++|++..+++|.+++++++++ +..+ ..+.++++.+.. ....+.+++++
T Consensus 305 ~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g~~~l~~~~~~--~~~~------~~l~~~~~~~~~---~~~~~~~~~~~ 373 (686)
T PRK10115 305 QWEELIPPRENIMLEGFTLFTDWLVVEERQRGLTSLRQINRK--TREV------IGIAFDDPAYVT---WIAYNPEPETS 373 (686)
T ss_pred cCeEEECCCCCCEEEEEEEECCEEEEEEEeCCEEEEEEEcCC--CCce------EEecCCCCceEe---eecccCCCCCc
Confidence 222388887777899999999999999999999999999876 3221 344444433321 12234456778
Q ss_pred eEEEEeecCCCCCeEEEEECCCCcEEEEEEeeecCCCCCCCceEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEE
Q 044808 398 ILRICFYTMRMPFSAYDYDMNTGISVLKKKETILGGFDESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFG 477 (623)
Q Consensus 398 ~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~ 477 (623)
.++++++|+++|+++|.+|+.+++.++++.... +.+++..+.+|+++++|+||++||++|++|++. ..+++.|+||++
T Consensus 374 ~~~~~~ss~~~P~~~y~~d~~~~~~~~l~~~~~-~~~~~~~~~~e~v~~~s~DG~~Ip~~l~~~~~~-~~~~~~P~ll~~ 451 (686)
T PRK10115 374 RLRYGYSSMTTPDTLFELDMDTGERRVLKQTEV-PGFDAANYRSEHLWITARDGVEVPVSLVYHRKH-FRKGHNPLLVYG 451 (686)
T ss_pred eEEEEEecCCCCCEEEEEECCCCcEEEEEecCC-CCcCccccEEEEEEEECCCCCEEEEEEEEECCC-CCCCCCCEEEEE
Confidence 899999999999999999999988777775543 358888889999999999999999999999876 456788999999
Q ss_pred cCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEE
Q 044808 478 YGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIE 557 (623)
Q Consensus 478 ~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~ 557 (623)
||||+.+..|.|+ +.++.|+++||+|+++|+|||||||++|+++|++.+|.++++||++|++||+++|++||+||||+
T Consensus 452 hGg~~~~~~p~f~--~~~~~l~~rG~~v~~~n~RGs~g~G~~w~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~ 529 (686)
T PRK10115 452 YGSYGASIDADFS--FSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGM 529 (686)
T ss_pred ECCCCCCCCCCcc--HHHHHHHHCCcEEEEEEcCCCCccCHHHHHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEE
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeChHHHHHHHHHHhCCCeeeEEEecCCccchhhhhhCCCCcccHHHHhhcccc
Q 044808 558 GGSAGGMLIGAVLNMRPELFKVAVADVPSVDVLTTILFYPRKRDLEIATSVVTL 611 (623)
Q Consensus 558 G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 611 (623)
|+||||||++++++++||+|+|+|+++||+||+++|.+++..........+++.
T Consensus 530 G~S~GG~l~~~~~~~~Pdlf~A~v~~vp~~D~~~~~~~~~~p~~~~~~~e~G~p 583 (686)
T PRK10115 530 GGSAGGMLMGVAINQRPELFHGVIAQVPFVDVVTTMLDESIPLTTGEFEEWGNP 583 (686)
T ss_pred EECHHHHHHHHHHhcChhheeEEEecCCchhHhhhcccCCCCCChhHHHHhCCC
Confidence 999999999999999999999999999999999999887755444333444443
No 3
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.3e-95 Score=753.72 Aligned_cols=568 Identities=33% Similarity=0.584 Sum_probs=475.6
Q ss_pred CCCCCCCcc-CCeEEeeeCcEeccCCcccccCCCChhHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhccCCCCCCCcE
Q 044808 7 RLSPPEAKK-VPFLMEIFGDKRLDNYHWLRDAGRDPDVQRYLELENKYAESIMSETNGYEFALFNELKARFKEDDISVPV 85 (623)
Q Consensus 7 ~~~~P~a~~-~~~~~~~hg~~~~DpY~WLed~~r~p~v~~~l~~en~y~~~~l~~~~~l~~~l~~e~~~~~~~~~~s~p~ 85 (623)
+..||+++| +++.+++||++|.|||+||||++ +.++.+||++||+||+++|++++..+ +|+.||+.|+.++..++|.
T Consensus 3 ~~~~P~~~k~e~~~~~~hg~~v~Dpy~Wl~d~d-~~~~~~fv~~en~~t~~vl~~~e~~~-kl~~em~~~i~ye~~~~p~ 80 (712)
T KOG2237|consen 3 PLQYPVARKDESVAEDFHGVTVEDPYRWLEDPD-DTEMKEFVEAENKYTDAVLEDTETKE-KLFSEMTKRIDYEIITPPL 80 (712)
T ss_pred CCCCCCcccccchhhhcCCceecCcchhhcCCc-HHHHHHHHHHhhhhhHHHHhccHHHH-HHHHHhhhccCccccCCcc
Confidence 455788877 45567899999999999999999 99999999999999999999997655 9999999999999999999
Q ss_pred EeCCEEEEEEeeCCCceEEEEEEecCCCCCCCcccccCCCCCCCCCceEEeechhhcccCCCCcEEEeeeEECCCCCEEE
Q 044808 86 RVGSHYYYQRRYLSKDYVQYCRRFIPNNEAPPSVYDIMPTGPDDPPEEVIIDEEVIKYKNSLENYRITAFKVSPNNKLVA 165 (623)
Q Consensus 86 ~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vllD~n~~a~~~~~~~~~l~~~~~SPDG~~lA 165 (623)
++|+|+||.++.+|+||++|||+.... + .+...|.+..+ ...+|+||.|++++++ +|+..+..+.|||.++||
T Consensus 81 r~G~~yyY~~n~~lkq~vl~~rr~~~~-e-~~~~ld~~~~~---dd~tV~Ld~~~~aed~--~Y~~~gls~~spD~~~ia 153 (712)
T KOG2237|consen 81 RWGPWYYYFYNTGLKQYVLYCRRLLEK-E-EEVFLDPNALG---DDGTVLLDTNQIAEDF--KYFAYGLSESSPDHKYIA 153 (712)
T ss_pred ccCCEEEEEEcCCceehhHHHHhhhhc-c-cceecCCccCC---CCceEEechhhhhhcC--CceEEeecccCCCceEEE
Confidence 999999999999999999999987621 1 12222333222 3457999999999998 899999999999999999
Q ss_pred EEEeCc-----eEEEEECCCCCcccc-ccCccceeEEec-CC-eEEEEEeCCCCCC-eEEEEECCCCCcccEEEEeecCC
Q 044808 166 FRENCG-----TVCVIDSETGAPAEK-PIQGCLEFEWAG-DE-AFLYTRRNAIAEP-QVWFHKLGEEQSKDTCLYRTRED 236 (623)
Q Consensus 166 ~~~~~~-----~l~v~dl~tg~~~~~-~i~~~~~~~Wsp-Dg-~l~y~~~d~~~~~-~v~~~~lgt~~~~d~lv~~~~~~ 236 (623)
|..+.. ++ |.++.+.+++.. ..++++.++|.. || .++|...+++.|+ +||+|.+|+.+.+|++++++.++
T Consensus 154 ~~~~~~~~e~~~~-v~~~~~~~~~~~~~~~g~~y~~w~~~dg~~l~~~t~~~~~r~hkvy~h~~Gtdq~~Dvl~~~e~d~ 232 (712)
T KOG2237|consen 154 YTKDTEGKELFTV-VIDVKFSGPVWTHDGKGVSYLAWAKQDGEDLLYGTEDENNRPHKVYYHTLGTDQSEDVLLYEEKDE 232 (712)
T ss_pred EEEcCCCCcccee-eeeeccCCceeeccCCceEeeeecccCCceeeeeeeccccCcceEEEEecccCCCcceEEEecCCC
Confidence 998766 56 888988887653 344566699987 78 7888888888899 99999999999999999999988
Q ss_pred ceeEEEEEcCCCcEEEEEeecce---eeEEEEEECCCCC-ceee-cCCCccceeEE------EEeeCCEEEE-EeCCCCC
Q 044808 237 LFDLTLEASESKKFLFVKSKTKV---TGFVYYFDVSRPE-TLWF-LPPWHLGIDMF------VSHRGNQFFI-RRSDGGF 304 (623)
Q Consensus 237 ~~~~~~~~S~Dg~~l~i~s~~~~---~s~l~~~dl~~~~-~~~~-l~~~~~~~~~~------~~~dg~~ly~-sn~~g~~ 304 (623)
.+++.+....|+++..|.+.+.+ .+.+|++|+..+. .++. ++++..++.+. +...+..+|+ ||.+ ++
T Consensus 233 ~~~vf~~~~kD~~~~~i~si~~t~s~~~~vf~~d~~~~~~gl~~~~~~~v~~v~~f~eh~~fi~~~~t~~~~~tn~~-~p 311 (712)
T KOG2237|consen 233 PKHVFISETKDSGFYTINSISETCSPVNKVFLCDLSSPSDGLELLILPRVKGVDCFVEHYDFITNEGTEFYFLTNKD-AP 311 (712)
T ss_pred CeEEEEEEEecCceEEEEEeeccCCccceEEEEecccccCCcchheeeccchhhhhhhhhhheeccCcceeeeccCC-CC
Confidence 77777777777777777765544 4599999998765 4553 77887777653 3445688999 9998 89
Q ss_pred CeEEEEEeCCCCCceee--EEcCCCCceEeEEEEeCCEEEEEEeeCCcc-eEEEEECCCCCCCcccccCCceeecCCCce
Q 044808 305 HSDVLTCPVDNTFETTV--LIPHRERVRVEEVRLFADHIAVYELEEGLP-KITTYCLPPVGEPLKTLQGGRTVDIFKSEL 381 (623)
Q Consensus 305 ~~~L~~~d~~~~~~~~~--li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~-~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~ 381 (623)
++++.++++..+...+| ++++++...++++..+++++++........ .+.+.++-. |. ....||.+.+
T Consensus 312 ~y~l~r~~~~~~~~~~W~~v~~e~~~~vl~~~~~~~~~~ll~~~~~~l~~i~q~~~~l~-g~--------~~~~fpLpv~ 382 (712)
T KOG2237|consen 312 NYYLLRIDVKEPEESKWETVFAEHEKDVLEDVDMVNDNLLLVCYMSDLKHILQVRDLLD-GS--------LLRSFPLPVG 382 (712)
T ss_pred ceeEEeeeccCccccccceeecccchhhhhhhhhhcCceEEEEEecCchhhcccccccc-Cc--------eeeeecCCCC
Confidence 99999999988866678 888888777888888876655555544433 333322222 32 1234555555
Q ss_pred EEEeeeccccCCcCCceEEEEeecCCCCCeEEEEECCCCcE--EEEEEe-eecCCCCCCCceEeeeEEECCCCCeEEEEE
Q 044808 382 CISRIHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTGIS--VLKKKE-TILGGFDESNYVTESKRAYASDGEEIPISI 458 (623)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l 458 (623)
++ .+...+++++.++|.++|+.+|+.+|.||+.+++. .+++.. ..+++|+.+.|++++++++|+||++||++|
T Consensus 383 sv----~~~~g~~~~~~~~f~~sS~l~P~~iy~yDl~~~~~e~~vf~e~~~~lpg~~~s~y~~~r~~~~SkDGt~VPM~I 458 (712)
T KOG2237|consen 383 SV----SGTSGDFKSSTIRFQFSSFLTPGSIYDYDLANGKPEPSVFREITVVLPGFDASDYVVERIEVSSKDGTKVPMFI 458 (712)
T ss_pred cc----cccccCCCCceEEEEEeccCCCCeEEEeeccCCCCCCcceeeeccccCcccccceEEEEEEEecCCCCccceEE
Confidence 65 33444788899999999999999999999998853 233322 234689999999999999999999999999
Q ss_pred EEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHH
Q 044808 459 VYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIA 538 (623)
Q Consensus 459 ~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~ 538 (623)
+|+++. +.+++.|++||+||||+++..|.|. .++..|+++|++.+++|+|||||+|++||+.|++.+|+|.|+||++
T Consensus 459 v~kk~~-k~dg~~P~LLygYGay~isl~p~f~--~srl~lld~G~Vla~a~VRGGGe~G~~WHk~G~lakKqN~f~Dfia 535 (712)
T KOG2237|consen 459 VYKKDI-KLDGSKPLLLYGYGAYGISLDPSFR--ASRLSLLDRGWVLAYANVRGGGEYGEQWHKDGRLAKKQNSFDDFIA 535 (712)
T ss_pred EEechh-hhcCCCceEEEEecccceeeccccc--cceeEEEecceEEEEEeeccCcccccchhhccchhhhcccHHHHHH
Confidence 999988 7788999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchhhhhhCCCCccc
Q 044808 539 CADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVLTTILFYPRKRD 601 (623)
Q Consensus 539 ~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~~~~ 601 (623)
|++||+++||+.|+|+||.|+|+||+|+++|+||+||||+|+|++|||+||++||.++.++..
T Consensus 536 ~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avia~VpfmDvL~t~~~tilplt 598 (712)
T KOG2237|consen 536 CAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVIAKVPFMDVLNTHKDTILPLT 598 (712)
T ss_pred HHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhhhcCcceehhhhhccCccccc
Confidence 999999999999999999999999999999999999999999999999999999999988654
No 4
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-68 Score=550.31 Aligned_cols=515 Identities=27% Similarity=0.397 Sum_probs=393.9
Q ss_pred eccCCcccccCCCChhHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhccCCCCCCCcEEeCCEEEEEEeeCCCceEEEE
Q 044808 27 RLDNYHWLRDAGRDPDVQRYLELENKYAESIMSETNGYEFALFNELKARFKEDDISVPVRVGSHYYYQRRYLSKDYVQYC 106 (623)
Q Consensus 27 ~~DpY~WLed~~r~p~v~~~l~~en~y~~~~l~~~~~l~~~l~~e~~~~~~~~~~s~p~~~g~~~y~~~~~~g~~~~~~~ 106 (623)
..|||+||||.+ ++|+++|+++||+-|..+|... +-++.+.+++.+.+..++.++|...|+++|...++.-...-+|-
T Consensus 2 ~~DPy~wlEd~~-~~eal~wv~~~N~~t~~~L~~~-~~~a~~~~~~~~l~d~~~~~~~~~~~~~~ynFw~D~~~p~Glwr 79 (648)
T COG1505 2 VPDPYRWLEDLD-SAEALKWVEAQNAKTREFLGED-SARAASDKRLLELWDYEDIPIPFERGGRYYNFWQDALYPRGLYR 79 (648)
T ss_pred CCCcchhhhcCC-cHHHHHHHHhhhhHHHHHhhcc-hhhHHHHHHHHHHhhccccCcceeccceeEEeeccccCcceeEE
Confidence 479999999999 9999999999999999999999 67888999999999888899999999988887776544444444
Q ss_pred EEecCCCCCCCcccccCCCCCCCCCceEEeechhhcccCCCCcEEEeeeEECCCCCEEEEEEeCc-----eEEEEECCCC
Q 044808 107 RRFIPNNEAPPSVYDIMPTGPDDPPEEVIIDEEVIKYKNSLENYRITAFKVSPNNKLVAFRENCG-----TVCVIDSETG 181 (623)
Q Consensus 107 r~~~~~~~~~~~~~~~~~~~~~~~~~~vllD~n~~a~~~~~~~~~l~~~~~SPDG~~lA~~~~~~-----~l~v~dl~tg 181 (623)
|..... .++ ..+..+||+|+++|++..+ ....++..+.+||+++++|+.+.+ .++++|++||
T Consensus 80 ~ttl~s----------yrs--~~p~WevLiD~d~Ls~~~g-~~v~~~Gas~~~~~~R~l~s~S~gG~D~~~~re~Dlet~ 146 (648)
T COG1505 80 RTTLET----------YRS--AKPEWEVLIDVDALSADLG-DKVALGGASVLPDGTRLLYSLSIGGSDAGITREFDLETG 146 (648)
T ss_pred eeccee----------ecc--cCCCceeecCHHHHhhhcC-CcEEEccceeCCCCCEEEEEecCCCCcceEEEEEEeccc
Confidence 432211 001 1246799999999996521 367788888889999999998876 8999999999
Q ss_pred CccccccCccce-eEEecCCeEEEEEeCC------CCCC----eEEEEECCCCCcccEEEEeecC-CceeEEEEEcCCCc
Q 044808 182 APAEKPIQGCLE-FEWAGDEAFLYTRRNA------IAEP----QVWFHKLGEEQSKDTCLYRTRE-DLFDLTLEASESKK 249 (623)
Q Consensus 182 ~~~~~~i~~~~~-~~WspDg~l~y~~~d~------~~~~----~v~~~~lgt~~~~d~lv~~~~~-~~~~~~~~~S~Dg~ 249 (623)
+.+.+. .-+.+ +.|.++++++|.+... ++.| .++++++.+++..++.|+...+ +.+...+.++.++.
T Consensus 147 ~fv~~~-~f~~~~~~wld~d~~~~~~~~~~~e~T~sGy~~~~~~~krg~~f~~~~~dv~V~a~~~~~~~~~~~~~~~~~~ 225 (648)
T COG1505 147 EFVEEE-GFKFPGISWLDDDGVFVSRYWRPKEKTPSGYPRVVKRLKRGKLFEGQEGDVMVNARGDQDPWGFRLVLSEDGD 225 (648)
T ss_pred ccccCC-CccccceEEecCCCEEEecccCCcccCccCCchHhhhhhhcccccCCCCceEEecccccCCccceEEEeeccc
Confidence 888754 22233 9999988888887632 1223 4667788888888888876542 11223445566666
Q ss_pred EEEEEeecce--eeEEEEEECCCCC--ceeec-C-CCccceeE-EEEeeCCEEEE-EeCCCCCCeEEEEEeCCCCCceee
Q 044808 250 FLFVKSKTKV--TGFVYYFDVSRPE--TLWFL-P-PWHLGIDM-FVSHRGNQFFI-RRSDGGFHSDVLTCPVDNTFETTV 321 (623)
Q Consensus 250 ~l~i~s~~~~--~s~l~~~dl~~~~--~~~~l-~-~~~~~~~~-~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~~~~~ 321 (623)
+.+....-.. ...++ +++-+.. ....+ . .+. .+ ....+.+.+++ +... .+..++. .
T Consensus 226 ~f~~~~~~~~~~~~~~~-l~~p~~~~~~~~~l~~~~r~---dw~~~~~~~g~l~l~~~e~-~~~g~~~----------a- 289 (648)
T COG1505 226 FFMLSLWLGTSGKGLIK-LGLPDKVGYEWGKLVNTLRA---DWTFADVDYGLLYLLTDED-LELGKVI----------A- 289 (648)
T ss_pred hhhheeeEeccCCCcee-ccCCccccceeeeeeEeecc---cccccCcccceEEEEehhc-cccCcee----------E-
Confidence 5443221111 11222 2211110 00000 0 000 00 01122233444 3332 1111111 1
Q ss_pred EEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCCCcccccCCceeecCCCceEEEeeeccccCCcCCceEEE
Q 044808 322 LIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCISRIHGIRDSQFSSSILRI 401 (623)
Q Consensus 322 li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~ 401 (623)
++.+.+...++.+..+++++++...++...++.++... |.. .+++.+|.+. ++ ...+.+.+++.+++
T Consensus 290 ~~~P~~~~~le~v~tt~~~~va~~l~nv~~~l~v~~~~--g~~------~~~v~l~~~g-a~----~~~~~~~~g~ev~l 356 (648)
T COG1505 290 EFIPEEEQSLEQVVTTKDKLVAGTLDNVSGRLEVYDLK--GER------IEEVELPPPG-AL----GMGSADKDGDEVFL 356 (648)
T ss_pred EecCCcccceeeeEEEcCeEEeeeehhccceEEEeccC--ceE------eeecccCCcc-ce----eeccCCCCCcEEEE
Confidence 44445566799999999999999999999999998877 532 2567777643 44 22355678899999
Q ss_pred EeecCCCCCeEEEEECCCCcEEEEEEeeecCCCCCCCceEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCC
Q 044808 402 CFYTMRMPFSAYDYDMNTGISVLKKKETILGGFDESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSY 481 (623)
Q Consensus 402 ~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~ 481 (623)
.++|+++|+++|+++..++++++++.++ ..||.+++++|+++++|+||++||.+|++ |+. +.+ +.|++||+|||+
T Consensus 357 ~~t~F~tP~~~~r~~~~~~eLe~ik~~p--~~FDa~~~~veQ~~atSkDGT~IPYFiv~-K~~-~~d-~~pTll~aYGGF 431 (648)
T COG1505 357 AFTSFTTPSTLYRLDLFGGELEVIREQP--VQFDADNYEVEQFFATSKDGTRIPYFIVR-KGA-KKD-ENPTLLYAYGGF 431 (648)
T ss_pred EeecccCCCceEEEecCCceehhhhhcc--CCcCccCceEEEEEEEcCCCccccEEEEe-cCC-cCC-CCceEEEecccc
Confidence 9999999999999999999888877666 38999999999999999999999999999 887 666 899999999999
Q ss_pred CCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeCh
Q 044808 482 GLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSA 561 (623)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~ 561 (623)
+.+..|.|+ +....|+++|++++++|+|||||||.+||+|+.+.++++.|+||+|+++.|+++|++.|++|||+|+|+
T Consensus 432 ~vsltP~fs--~~~~~WLerGg~~v~ANIRGGGEfGp~WH~Aa~k~nrq~vfdDf~AVaedLi~rgitspe~lgi~GgSN 509 (648)
T COG1505 432 NISLTPRFS--GSRKLWLERGGVFVLANIRGGGEFGPEWHQAGMKENKQNVFDDFIAVAEDLIKRGITSPEKLGIQGGSN 509 (648)
T ss_pred ccccCCccc--hhhHHHHhcCCeEEEEecccCCccCHHHHHHHhhhcchhhhHHHHHHHHHHHHhCCCCHHHhhhccCCC
Confidence 999999999 888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCeeeEEEecCCccchhhhh
Q 044808 562 GGMLIGAVLNMRPELFKVAVADVPSVDVLTTI 593 (623)
Q Consensus 562 GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~ 593 (623)
||+||+++++|+||+|.|+||++|++||+++.
T Consensus 510 GGLLvg~alTQrPelfgA~v~evPllDMlRYh 541 (648)
T COG1505 510 GGLLVGAALTQRPELFGAAVCEVPLLDMLRYH 541 (648)
T ss_pred CceEEEeeeccChhhhCceeeccchhhhhhhc
Confidence 99999999999999999999999999999764
No 5
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=100.00 E-value=7.5e-60 Score=508.00 Aligned_cols=388 Identities=31% Similarity=0.540 Sum_probs=320.9
Q ss_pred CCCCccCCeEEeeeCcEeccCCcccccCCCChhHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHhccCCCCCCCcEEeCC
Q 044808 10 PPEAKKVPFLMEIFGDKRLDNYHWLRDAGRDPDVQRYLELENKYAESIMSETNGYEFALFNELKARFKEDDISVPVRVGS 89 (623)
Q Consensus 10 ~P~a~~~~~~~~~hg~~~~DpY~WLed~~r~p~v~~~l~~en~y~~~~l~~~~~l~~~l~~e~~~~~~~~~~s~p~~~g~ 89 (623)
||++++.|+++++||+++.|||+||||.+ +|+|++||++||+||+++|+++++++++|++||++++.+++.++|.+.|+
T Consensus 1 P~~~~~~~~~~~~hg~~~~DpY~WLed~~-~~~v~~~~~~en~~t~~~l~~~~~~~~~l~~~~~~~~~~~~~~~p~~~g~ 79 (414)
T PF02897_consen 1 PPTARKPPVVETLHGVTITDPYRWLEDDD-SPEVLAWLKAENAYTEAYLAQLKPLREKLYEELKARINEDRESVPVRRGG 79 (414)
T ss_dssp S-TTS-TTSEEEETTEEEE-TTGGGGSTT-SHHHHHHHHHHHHHHHHHHHTSHTCHHHHHHHHHHHCSSSEE---EEETT
T ss_pred CCCCCCCCeeeecCCCEeecCchhhcCCC-CHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHhhccCCCccccEEECC
Confidence 56666777999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeCCCceEEEEEEecCCCCCCCcccccCCCCCCCCCceEEeechhhcccCCCCcEEEeeeEECCCCCEEEEEEe
Q 044808 90 HYYYQRRYLSKDYVQYCRRFIPNNEAPPSVYDIMPTGPDDPPEEVIIDEEVIKYKNSLENYRITAFKVSPNNKLVAFREN 169 (623)
Q Consensus 90 ~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vllD~n~~a~~~~~~~~~l~~~~~SPDG~~lA~~~~ 169 (623)
|+||.+..++++|+++||+..... ....+|+|||+|++++++ +++.++.+.+||||++|||+.+
T Consensus 80 ~~y~~~~~~~~~~~~~~r~~~~~~--------------~~~~~evllD~n~l~~~~--~~~~~~~~~~Spdg~~la~~~s 143 (414)
T PF02897_consen 80 YYYYSRNQGGKNYPVLYRRKTDEE--------------DGPEEEVLLDPNELAKDG--GYVSLGGFSVSPDGKRLAYSLS 143 (414)
T ss_dssp EEEEEEE-SS-SS-EEEEEETTS---------------TS-C-EEEEEGGGGSTTS--S-EEEEEEEETTTSSEEEEEEE
T ss_pred eEEEEEEcCCCceEEEEEEecccC--------------CCCceEEEEcchHhhccC--ceEEeeeeeECCCCCEEEEEec
Confidence 999999999999999999986420 012359999999999885 5888999999999999999988
Q ss_pred Cc-----eEEEEECCCCCccccccCccc-e-eEEecCC-eEEEEEeCCCCC------C-eEEEEECCCCCcccEEEEeec
Q 044808 170 CG-----TVCVIDSETGAPAEKPIQGCL-E-FEWAGDE-AFLYTRRNAIAE------P-QVWFHKLGEEQSKDTCLYRTR 234 (623)
Q Consensus 170 ~~-----~l~v~dl~tg~~~~~~i~~~~-~-~~WspDg-~l~y~~~d~~~~------~-~v~~~~lgt~~~~d~lv~~~~ 234 (623)
.+ +|+|+|+++|+.+.+.++++. . ++|++|| .|||++.++..+ + +||+|++|+++.++.+||+++
T Consensus 144 ~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~ 223 (414)
T PF02897_consen 144 DGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEP 223 (414)
T ss_dssp ETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-T
T ss_pred CCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeec
Confidence 75 899999999999988877765 3 9999999 899999987666 8 999999999998889999998
Q ss_pred CCce-eEEEEEcCCCcEEEEEeeccee-eEEEEEECCCC---C-ceeecCCCccceeEEEEeeCCEEEE-EeCCCCCCeE
Q 044808 235 EDLF-DLTLEASESKKFLFVKSKTKVT-GFVYYFDVSRP---E-TLWFLPPWHLGIDMFVSHRGNQFFI-RRSDGGFHSD 307 (623)
Q Consensus 235 ~~~~-~~~~~~S~Dg~~l~i~s~~~~~-s~l~~~dl~~~---~-~~~~l~~~~~~~~~~~~~dg~~ly~-sn~~g~~~~~ 307 (623)
++.+ ++++.+|+||++|++.+.+..+ +++|++++.++ . .++++.++..+..+.+.+.|+.||+ ||.+ +++++
T Consensus 224 ~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~-a~~~~ 302 (414)
T PF02897_consen 224 DEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDD-APNGR 302 (414)
T ss_dssp TCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT--TT-E
T ss_pred CCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCC-CCCcE
Confidence 8877 8899999999999999887777 99999999985 3 5888888888888889999999999 9987 89999
Q ss_pred EEEEeCCCCCceee---EEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCCCcccccCCceeecCCCceEEE
Q 044808 308 VLTCPVDNTFETTV---LIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCIS 384 (623)
Q Consensus 308 L~~~d~~~~~~~~~---li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~~~ 384 (623)
|++++++++....| ++++.++..|+++.+++++|++..++++.++|.++++.. +.. ...+.+|.. +++
T Consensus 303 l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~-~~~------~~~~~~p~~-g~v- 373 (414)
T PF02897_consen 303 LVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDD-GKE------SREIPLPEA-GSV- 373 (414)
T ss_dssp EEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT--TEE------EEEEESSSS-SEE-
T ss_pred EEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCC-CcE------EeeecCCcc-eEE-
Confidence 99999998864333 788888888999999999999999999999999999982 221 245666653 445
Q ss_pred eeeccccCCcCCceEEEEeecCCCCCeEEEEECCCCcEEEEEE
Q 044808 385 RIHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTGISVLKKK 427 (623)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~ 427 (623)
.+.+.+++++.++|.++|+++|+++|.||+.+++.+++++
T Consensus 374 ---~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k~ 413 (414)
T PF02897_consen 374 ---SGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLKQ 413 (414)
T ss_dssp ---EEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEEE
T ss_pred ---eccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEEe
Confidence 3456678899999999999999999999999999988775
No 6
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=100.00 E-value=8.5e-37 Score=341.73 Aligned_cols=421 Identities=17% Similarity=0.145 Sum_probs=271.7
Q ss_pred EeeeEECCCCCEEEEEEeCc----eEEEEECCCCCccccccCccceeEEecCC-eEEEEEeCC----CCC----C-eEEE
Q 044808 152 ITAFKVSPNNKLVAFRENCG----TVCVIDSETGAPAEKPIQGCLEFEWAGDE-AFLYTRRNA----IAE----P-QVWF 217 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~----~l~v~dl~tg~~~~~~i~~~~~~~WspDg-~l~y~~~d~----~~~----~-~v~~ 217 (623)
+..+.|||||+.+++....+ ++++.+.. | ........+....|+++| .+.+..... ... + ++..
T Consensus 62 ~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~-g-~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (620)
T COG1506 62 VSELRWSPDGSVLAFVSTDGGRVAQLYLVDVG-G-LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPV 139 (620)
T ss_pred ccccccCCCCCEEEEEeccCCCcceEEEEecC-C-ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccce
Confidence 45678899999999998443 89999988 5 222222334458999999 666632211 011 1 1222
Q ss_pred EECCCC-CcccEEEEeec--------CCceeEEEEEcCCCcEEEEEeecc----eeeEEEEEECCCCCceeecCCCccce
Q 044808 218 HKLGEE-QSKDTCLYRTR--------EDLFDLTLEASESKKFLFVKSKTK----VTGFVYYFDVSRPETLWFLPPWHLGI 284 (623)
Q Consensus 218 ~~lgt~-~~~d~lv~~~~--------~~~~~~~~~~S~Dg~~l~i~s~~~----~~s~l~~~dl~~~~~~~~l~~~~~~~ 284 (623)
+..+.+ ...+..+++.. ...-.+...+..+++.++...... .....++....++. ...+.+.....
T Consensus 140 ~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 218 (620)
T COG1506 140 WFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIEGNGE-LESLTPGEGSI 218 (620)
T ss_pred eecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEecCCCc-eEEEcCCCcee
Confidence 222222 11111122211 011123344556666665544322 12333333333443 55555554433
Q ss_pred e-EEEEeeCCEEEE-EeCCC---CCCeEEEEEeCCCCCceeeEEcCC--CC-ceEeEEEEeCCEEEEEEee-CCcceEEE
Q 044808 285 D-MFVSHRGNQFFI-RRSDG---GFHSDVLTCPVDNTFETTVLIPHR--ER-VRVEEVRLFADHIAVYELE-EGLPKITT 355 (623)
Q Consensus 285 ~-~~~~~dg~~ly~-sn~~g---~~~~~L~~~d~~~~~~~~~li~~~--~d-~~i~~~~~~~~~Lv~~~~~-~g~~~l~v 355 (623)
. ..+.++|+.+++ .+... .....++..+.+......-+...+ .. ..+... ..++.+++.... .+...+..
T Consensus 219 ~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~l~~ 297 (620)
T COG1506 219 SKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGEVDGDLSSGDDTRGAWAVEGG-LDGDGLLFIATDGGGSSPLFR 297 (620)
T ss_pred eeeeeCCCCCeeEEeccCCccCccccceEEEEeccccccceeeccCCcccCcHHhccc-cCCCcEEEEEecCCCceEEEE
Confidence 2 357788887777 54331 233445555522221111001111 00 001111 344566666665 44444443
Q ss_pred EECCCCCCCcccccCCceeecCCCceEEEeeeccccCCcCCceEEEEeecCCCCCeEEEEECCCCcEEEEEEeeecCCCC
Q 044808 356 YCLPPVGEPLKTLQGGRTVDIFKSELCISRIHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTGISVLKKKETILGGFD 435 (623)
Q Consensus 356 ~~l~~~g~~~~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~~~~ 435 (623)
..... +. ...+. .+.+.+ ..+ +.+++.+++.++++..|+++|.++. +.+.+++.... ..+.
T Consensus 298 ~~~~~-~~-------~~~~~--~~~~~v----~~f--~~~~~~~~~~~s~~~~p~~i~~~~~-~~~~~~~~~~~--~~~~ 358 (620)
T COG1506 298 VDDLG-GG-------VEGLS--GDDGGV----PGF--DVDGRKLALAYSSPTEPPEIYLYDR-GEEAKLTSSNN--SGLK 358 (620)
T ss_pred EeccC-Cc-------eeeec--CCCceE----EEE--eeCCCEEEEEecCCCCccceEEEcC-CCceEEeeccc--cccc
Confidence 33221 11 01122 121233 222 3378999999999999999999987 33333332221 1222
Q ss_pred CCCc-eEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCC
Q 044808 436 ESNY-VTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGD 514 (623)
Q Consensus 436 ~~~~-~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~ 514 (623)
...+ .+|.+++++.||.+|++|++.|+++ ++.+++|+||++||||..+....|. ...|.|+++||+|+.+|+|||+
T Consensus 359 ~~~~~~~e~~~~~~~dG~~i~~~l~~P~~~-~~~k~yP~i~~~hGGP~~~~~~~~~--~~~q~~~~~G~~V~~~n~RGS~ 435 (620)
T COG1506 359 KVKLAEPEPVTYKSNDGETIHGWLYKPPGF-DPRKKYPLIVYIHGGPSAQVGYSFN--PEIQVLASAGYAVLAPNYRGST 435 (620)
T ss_pred ccccCCceEEEEEcCCCCEEEEEEecCCCC-CCCCCCCEEEEeCCCCccccccccc--hhhHHHhcCCeEEEEeCCCCCC
Confidence 2333 6899999999999999999999998 7777899999999999888888888 9999999999999999999999
Q ss_pred cCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchhhhhh
Q 044808 515 EKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVLTTIL 594 (623)
Q Consensus 515 ~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~ 594 (623)
|||++|.+++.+.++..+++|++++++||.+++++|++||||+|+|||||||++++++.| +|+|+++..|++|++.++.
T Consensus 436 GyG~~F~~~~~~~~g~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~-~f~a~~~~~~~~~~~~~~~ 514 (620)
T COG1506 436 GYGREFADAIRGDWGGVDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTP-RFKAAVAVAGGVDWLLYFG 514 (620)
T ss_pred ccHHHHHHhhhhccCCccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCc-hhheEEeccCcchhhhhcc
Confidence 999999999999999999999999999999999999999999999999999999999887 8999999999999987776
Q ss_pred CCCCc
Q 044808 595 FYPRK 599 (623)
Q Consensus 595 ~~~~~ 599 (623)
..+..
T Consensus 515 ~~~~~ 519 (620)
T COG1506 515 ESTEG 519 (620)
T ss_pred ccchh
Confidence 55543
No 7
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-32 Score=278.50 Aligned_cols=266 Identities=17% Similarity=0.152 Sum_probs=202.2
Q ss_pred EEEEEEeeCCc--ceEEEEECCCCCCCcccccCCceeecCCCceEEEeeeccccCCcCCceEEEEeecCCCCCeEEEEEC
Q 044808 340 HIAVYELEEGL--PKITTYCLPPVGEPLKTLQGGRTVDIFKSELCISRIHGIRDSQFSSSILRICFYTMRMPFSAYDYDM 417 (623)
Q Consensus 340 ~Lv~~~~~~g~--~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~ 417 (623)
-+++....++. ..|++..+...|. ...+.++.++. ....+-+-+.++..++|-.+|+.+-.|.+
T Consensus 517 LVYf~gt~d~PlE~hLyvvsye~~g~---------~~rlt~~g~sh-----~~~l~~~~d~fv~~~~sv~sP~cv~~y~l 582 (867)
T KOG2281|consen 517 LVYFVGTKDTPLEHHLYVVSYENPGE---------IARLTEPGYSH-----SCELDQQCDHFVSYYSSVGSPPCVSLYSL 582 (867)
T ss_pred EEEEEccCCCCceeeEEEEEEecCCc---------eeeccCCCccc-----chhhhhhhhhHhhhhhcCCCCceEEEEec
Confidence 35555566653 3567766653243 12233433332 11223334557778899999999999988
Q ss_pred CCCcEEEEEEee----e--cCCCCCCCce-EeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCC-CCCC
Q 044808 418 NTGISVLKKKET----I--LGGFDESNYV-TESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGP-SSYS 489 (623)
Q Consensus 418 ~~~~~~~~~~~~----~--~~~~~~~~~~-~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~-~~~~ 489 (623)
..++...+..+. + .....+.+|+ +|.+.+.++-|..+.++|++|-++ ++.+|+|+++++||||+.+. ...|
T Consensus 583 s~~~~~~l~~q~~~~~~l~~~~~~~Pdy~p~eif~fqs~tg~~lYgmiyKPhn~-~pgkkYptvl~VYGGP~VQlVnnsf 661 (867)
T KOG2281|consen 583 SWPENDPLPKQVSFWAILVSGAPPPPDYVPPEIFSFQSKTGLTLYGMIYKPHNF-QPGKKYPTVLNVYGGPGVQLVNNSF 661 (867)
T ss_pred cCCccCcccchhhHHHHHHhcCCCCCccCChhheeeecCCCcEEEEEEEccccC-CCCCCCceEEEEcCCCceEEeeccc
Confidence 766543322211 0 1223455675 588989999999999998888888 88999999999999999986 3467
Q ss_pred Cch--hhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHH
Q 044808 490 NSI--ASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKS-NYCSEDNLCIEGGSAGGMLI 566 (623)
Q Consensus 490 ~~~--~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~l~ 566 (623)
... .....|+++||+|+.+|.|||.-+|.+|....++..|+.+++|.+.+++||+++ |++|++||||.||||||||.
T Consensus 662 kgi~ylR~~~LaslGy~Vv~IDnRGS~hRGlkFE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLS 741 (867)
T KOG2281|consen 662 KGIQYLRFCRLASLGYVVVFIDNRGSAHRGLKFESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLS 741 (867)
T ss_pred cceehhhhhhhhhcceEEEEEcCCCccccchhhHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHH
Confidence 622 234788999999999999999999999999999999999999999999999998 59999999999999999999
Q ss_pred HHHHHhCCCeeeEEEecCCccchh--------hhhhCC----CCcccHHHHhhccccccccccccc
Q 044808 567 GAVLNMRPELFKVAVADVPSVDVL--------TTILFY----PRKRDLEIATSVVTLKISSRSLML 620 (623)
Q Consensus 567 ~~~~~~~p~~f~a~v~~~~~~d~~--------~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 620 (623)
+.+++++|++|+||||++||+||. +.|.-+ ..+....++-+|..|.-+..-+||
T Consensus 742 lm~L~~~P~IfrvAIAGapVT~W~~YDTgYTERYMg~P~~nE~gY~agSV~~~VeklpdepnRLlL 807 (867)
T KOG2281|consen 742 LMGLAQYPNIFRVAIAGAPVTDWRLYDTGYTERYMGYPDNNEHGYGAGSVAGHVEKLPDEPNRLLL 807 (867)
T ss_pred HHHhhcCcceeeEEeccCcceeeeeecccchhhhcCCCccchhcccchhHHHHHhhCCCCCceEEE
Confidence 999999999999999999999996 334222 345567778888888777666665
No 8
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.3e-24 Score=245.43 Aligned_cols=288 Identities=18% Similarity=0.140 Sum_probs=188.2
Q ss_pred EEeeC-CEEEE-EeCCCCCCeEEEEEeCCCCCceeeEEcCCCCc-eEeEEEEeCCEEEEEEeeCC--cceEEEEECCCCC
Q 044808 288 VSHRG-NQFFI-RRSDGGFHSDVLTCPVDNTFETTVLIPHRERV-RVEEVRLFADHIAVYELEEG--LPKITTYCLPPVG 362 (623)
Q Consensus 288 ~~~dg-~~ly~-sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d~-~i~~~~~~~~~Lv~~~~~~g--~~~l~v~~l~~~g 362 (623)
++.++ ..+++ +..+ .+-.++.......+.....+..+.+++ .|..+.-..+.+++.....+ ...++.+++.. +
T Consensus 347 ~~~d~~~~~~~~~~~~-~~~~hi~~~~~~~~~~~~~lt~g~w~v~~i~~~~~~~~~i~f~~~~~~~~~~~ly~i~~~~-~ 424 (755)
T KOG2100|consen 347 FSSDGSSYLKVDSVSD-GGYNHIAYLKLSNGSEPRMLTSGNWEVTSILGYDKDSNRIYFDAYEEDPSERHLYSISLGS-G 424 (755)
T ss_pred EeecCCceeEEEeecc-CCEEEEEEEEcCCCCccccccccceEEEEeccccCCCceEEEEecCCCCCceEEEEEEccc-c
Confidence 44444 34455 5554 223455555555442111233333322 12222223467888887754 44566665552 1
Q ss_pred CCcccccCCceeecCCCceEEEeeeccccCCcCCceEEEEeecCCCCCeEEEEECCCCc--EEEEEEee-ec---CCCCC
Q 044808 363 EPLKTLQGGRTVDIFKSELCISRIHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTGI--SVLKKKET-IL---GGFDE 436 (623)
Q Consensus 363 ~~~~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~--~~~~~~~~-~~---~~~~~ 436 (623)
. ...++ . ...+ ..++. ...+.+.....++..++.+..|...+..-..... ...+..+. .. ..+..
T Consensus 425 ~-~~~lt-~--~~~~-~~~~~----~~~~~~~~~~~~v~~~~gP~~p~~~~~~~~~~~~~~~~~Le~n~~~~~~~~~~~~ 495 (755)
T KOG2100|consen 425 T-VESLT-C--SLIT-GPCTY----LSVSFSKSAKYYVLSCSGPKVPDGQLTRHSSKNSKTIVVLETNEELKKTIENVAL 495 (755)
T ss_pred c-ccccc-c--cCCC-CcceE----EEEecCCcccEEEEEccCCCCCcceeeccccccceEEEEeccChhhHHHhhcccC
Confidence 1 11111 0 0011 12232 2334444567788888888888542221111111 11222111 11 11222
Q ss_pred CCceEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCC-CCCCchhhhHHHHHCCcEEEEEeccCCCc
Q 044808 437 SNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPS-SYSNSIASRLTILDRGIIFAIAHVRGGDE 515 (623)
Q Consensus 437 ~~~~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~-~~~~~~~~~~~~~~~G~~v~~~~~RG~~~ 515 (623)
.....+.+.. ||....+.++.|+++ .+.+++|+||.+||||+++.. ..|........+..+|++|+.+|+||+|+
T Consensus 496 p~~~~~~i~~---~~~~~~~~~~lP~~~-~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~~~s~~g~~v~~vd~RGs~~ 571 (755)
T KOG2100|consen 496 PIVEFGKIEI---DGITANAILILPPNF-DPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEVVVSSRGFAVLQVDGRGSGG 571 (755)
T ss_pred CcceeEEEEe---ccEEEEEEEecCCCC-CCCCCCCEEEEecCCCCcceeeeeEEecHHHHhhccCCeEEEEEcCCCcCC
Confidence 2223344444 999999999999999 778899999999999986643 34553344556777899999999999999
Q ss_pred CChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC-CeeeEEEecCCccchh
Q 044808 516 KGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRP-ELFKVAVADVPSVDVL 590 (623)
Q Consensus 516 ~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p-~~f~a~v~~~~~~d~~ 590 (623)
+|.++..+..+++|..++.|++.|++++.+++++|++||||+||||||||++.++.++| +.|||++|.+||+||.
T Consensus 572 ~G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~fkcgvavaPVtd~~ 647 (755)
T KOG2100|consen 572 YGWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDVFKCGVAVAPVTDWL 647 (755)
T ss_pred cchhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCceEEEEEEecceeeee
Confidence 99999999999999999999999999999999999999999999999999999999988 8999999999999998
No 9
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.86 E-value=4.5e-22 Score=194.33 Aligned_cols=110 Identities=27% Similarity=0.344 Sum_probs=99.2
Q ss_pred CCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHH
Q 044808 487 SYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLI 566 (623)
Q Consensus 487 ~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~ 566 (623)
|+|+ ...+.|+++||+|+.+|+|||++||.+|++++.+.++..+++|++++++||++++.+||+||+|+|+|+||+++
T Consensus 1 ~~f~--~~~~~la~~Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a 78 (213)
T PF00326_consen 1 PSFN--WNAQLLASQGYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLA 78 (213)
T ss_dssp ---S--HHHHHHHTTT-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHH
T ss_pred Ceee--HHHHHHHhCCEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEccccccccc
Confidence 4678 88899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCeeeEEEecCCccchhhhhhCCCC
Q 044808 567 GAVLNMRPELFKVAVADVPSVDVLTTILFYPR 598 (623)
Q Consensus 567 ~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~~ 598 (623)
+++++++|++|+|+|+.+|++|+...+.....
T Consensus 79 ~~~~~~~~~~f~a~v~~~g~~d~~~~~~~~~~ 110 (213)
T PF00326_consen 79 LLAATQHPDRFKAAVAGAGVSDLFSYYGTTDI 110 (213)
T ss_dssp HHHHHHTCCGSSEEEEESE-SSTTCSBHHTCC
T ss_pred chhhcccceeeeeeeccceecchhcccccccc
Confidence 99999999999999999999999987766543
No 10
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.66 E-value=1.7e-14 Score=155.72 Aligned_cols=272 Identities=13% Similarity=0.034 Sum_probs=179.6
Q ss_pred HHHHHHHHHhcChhhHHHHHHHHHhccCCCCCCCcEEeCCEEEEEEeeCCC-ceEEEEEEecCCCCCCCcccccCCCCCC
Q 044808 50 ENKYAESIMSETNGYEFALFNELKARFKEDDISVPVRVGSHYYYQRRYLSK-DYVQYCRRFIPNNEAPPSVYDIMPTGPD 128 (623)
Q Consensus 50 en~y~~~~l~~~~~l~~~l~~e~~~~~~~~~~s~p~~~g~~~y~~~~~~g~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 128 (623)
|+.++++++... +.++.+..+|...+-+...+.|...+.+++|.+..+++ .+.++... ..
T Consensus 118 ~~~~~~~~~~~~-~~~~~~a~~~~~~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~d-~~----------------- 178 (417)
T TIGR02800 118 LQLLGKQYTVTA-SQLRRVAHRIADAIYEKLTGERGAFSTRIAYVSKSGKSRRYELQVAD-YD----------------- 178 (417)
T ss_pred EEeeeeeEEcCH-HHHHHHHHHHHHHHHHHhcCCCCCcCCEEEEEEEeCCCCcceEEEEc-CC-----------------
Confidence 566777777665 56667777777766666667888788877777665433 44455443 21
Q ss_pred CCCceEEeechhhcccCCCCcEEEeeeEECCCCCEEEEEEeCc---eEEEEECCCCCcccc-ccCccc-eeEEecCC-eE
Q 044808 129 DPPEEVIIDEEVIKYKNSLENYRITAFKVSPNNKLVAFRENCG---TVCVIDSETGAPAEK-PIQGCL-EFEWAGDE-AF 202 (623)
Q Consensus 129 ~~~~~vllD~n~~a~~~~~~~~~l~~~~~SPDG~~lA~~~~~~---~l~v~dl~tg~~~~~-~i~~~~-~~~WspDg-~l 202 (623)
....+.|++++.. +..+.|||||++|||+...+ +|+++|+++|+.... .+.+.. .++|+||| +|
T Consensus 179 g~~~~~l~~~~~~----------~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l 248 (417)
T TIGR02800 179 GANPQTITRSREP----------ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKL 248 (417)
T ss_pred CCCCEEeecCCCc----------eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEE
Confidence 1245677776521 23568999999999997654 899999999875431 233332 48999999 78
Q ss_pred EEEEeCCCCCCeEEEEECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcc
Q 044808 203 LYTRRNAIAEPQVWFHKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHL 282 (623)
Q Consensus 203 ~y~~~d~~~~~~v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~ 282 (623)
+|+.... ..++||.++++++.. ..+... ......+.|+|||++|++.+.......||++++.+++ .+.+.....
T Consensus 249 ~~~~~~~-~~~~i~~~d~~~~~~--~~l~~~--~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-~~~l~~~~~ 322 (417)
T TIGR02800 249 AVSLSKD-GNPDIYVMDLDGKQL--TRLTNG--PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-VRRLTFRGG 322 (417)
T ss_pred EEEECCC-CCccEEEEECCCCCE--EECCCC--CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEeecCCC
Confidence 8875432 234899999988753 223221 1223346789999999987765556689999998875 555543322
Q ss_pred c-eeEEEEeeCCEEEEEeCCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECC
Q 044808 283 G-IDMFVSHRGNQFFIRRSDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 283 ~-~~~~~~~dg~~ly~sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
. ....|+++|+.++++..+ .++++|+.+++.++.. + ++.+.....--.+++.++.|++....++...+++++.+
T Consensus 323 ~~~~~~~spdg~~i~~~~~~-~~~~~i~~~d~~~~~~-~-~l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 323 YNASPSWSPDGDLIAFVHRE-GGGFNIAVMDLDGGGE-R-VLTDTGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred CccCeEECCCCCEEEEEEcc-CCceEEEEEeCCCCCe-E-EccCCCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 2 234688999888884433 3578999999876432 2 33332221111455667889999998888889988876
No 11
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.1e-12 Score=142.25 Aligned_cols=200 Identities=13% Similarity=0.125 Sum_probs=139.1
Q ss_pred EeeeEECCCCCEEEEEEeCc---eEEEEECCCCCcccc-ccCccc-eeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCc
Q 044808 152 ITAFKVSPNNKLVAFRENCG---TVCVIDSETGAPAEK-PIQGCL-EFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~---~l~v~dl~tg~~~~~-~i~~~~-~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~ 225 (623)
+..+.|||||++|||+.+.. +||++|+.+|+.... ..++.. .++||||| +|+|+.... +.++||.+++.+++.
T Consensus 220 ~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~-g~~~Iy~~dl~tg~~ 298 (448)
T PRK04792 220 LMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKD-GQPEIYVVDIATKAL 298 (448)
T ss_pred ccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCC-CCeEEEEEECCCCCe
Confidence 45689999999999997654 899999999986432 233333 48999999 788876432 234899999987643
Q ss_pred ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCC-CccceeEEEEeeCCEEEE-EeCCCC
Q 044808 226 KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPP-WHLGIDMFVSHRGNQFFI-RRSDGG 303 (623)
Q Consensus 226 ~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~-~~~~~~~~~~~dg~~ly~-sn~~g~ 303 (623)
..+... ......+.|||||++|++.+.......||++|+++++ .+.++. ........|+++|+.+++ +...
T Consensus 299 --~~lt~~--~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~-~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~-- 371 (448)
T PRK04792 299 --TRITRH--RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK-VSRLTFEGEQNLGGSITPDGRSMIMVNRTN-- 371 (448)
T ss_pred --EECccC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEEecCCCCCcCeeECCCCCEEEEEEecC--
Confidence 223221 1233457899999999998765566799999998876 555532 211122368999999999 6654
Q ss_pred CCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCC
Q 044808 304 FHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGE 363 (623)
Q Consensus 304 ~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~ 363 (623)
..++|+.+|++++... .+.....+... .+++.++.|++....++..+|++++.+ |.
T Consensus 372 g~~~I~~~dl~~g~~~-~lt~~~~d~~p-s~spdG~~I~~~~~~~g~~~l~~~~~~--G~ 427 (448)
T PRK04792 372 GKFNIARQDLETGAMQ-VLTSTRLDESP-SVAPNGTMVIYSTTYQGKQVLAAVSID--GR 427 (448)
T ss_pred CceEEEEEECCCCCeE-EccCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEECC--CC
Confidence 3578999998876432 22222122212 466677889999988888889999887 54
No 12
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.60 E-value=3.5e-15 Score=142.02 Aligned_cols=147 Identities=24% Similarity=0.286 Sum_probs=118.0
Q ss_pred CCCCCceEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCC
Q 044808 434 FDESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGG 513 (623)
Q Consensus 434 ~~~~~~~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~ 513 (623)
|.....++-.++|++.+|.+|.+|++.|+.. .++.|+||..|| |+.... +- ...+.|+..||+|+.+++||-
T Consensus 49 ~~~~~ve~ydvTf~g~~g~rI~gwlvlP~~~---~~~~P~vV~fhG-Y~g~~g--~~--~~~l~wa~~Gyavf~MdvRGQ 120 (321)
T COG3458 49 FTLPRVEVYDVTFTGYGGARIKGWLVLPRHE---KGKLPAVVQFHG-YGGRGG--EW--HDMLHWAVAGYAVFVMDVRGQ 120 (321)
T ss_pred ccCCceEEEEEEEeccCCceEEEEEEeeccc---CCccceEEEEee-ccCCCC--Cc--cccccccccceeEEEEecccC
Confidence 4445567889999999999999999999864 488999999998 665533 22 356789999999999999997
Q ss_pred CcCCh------------hHHHcccccCC-----CchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCe
Q 044808 514 DEKGK------------QWHENGKLLNK-----RNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPEL 576 (623)
Q Consensus 514 ~~~G~------------~~~~~~~~~~~-----~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~ 576 (623)
|++-. -|+-.|..+.+ ...+.|..-+++-|+....+|++||++.|+|.||.++++++...| +
T Consensus 121 g~~~~dt~~~p~~~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~-r 199 (321)
T COG3458 121 GSSSQDTADPPGGPSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDP-R 199 (321)
T ss_pred CCccccCCCCCCCCcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcCh-h
Confidence 76622 13333333322 247999999999999999999999999999999999999998876 5
Q ss_pred eeEEEecCCccch
Q 044808 577 FKVAVADVPSVDV 589 (623)
Q Consensus 577 f~a~v~~~~~~d~ 589 (623)
.|++++.+|++--
T Consensus 200 ik~~~~~~Pfl~d 212 (321)
T COG3458 200 IKAVVADYPFLSD 212 (321)
T ss_pred hhccccccccccc
Confidence 6999999998743
No 13
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.58 E-value=4e-15 Score=150.85 Aligned_cols=139 Identities=19% Similarity=0.268 Sum_probs=102.1
Q ss_pred CCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCC-----CCCch--hhhHHHHHCCcEEEEEeccCCCcCChhHHH
Q 044808 450 DGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSS-----YSNSI--ASRLTILDRGIIFAIAHVRGGDEKGKQWHE 522 (623)
Q Consensus 450 dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~-----~~~~~--~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~ 522 (623)
||++|.+.|+.| +. ..+++.|+||..++ |+..... ..... .....|+++||+|+.+|.||.|+.+..|..
T Consensus 1 DGv~L~adv~~P-~~-~~~~~~P~il~~tp-Y~~~~~~~~~~~~~~~~~~~~~~~~~~~GY~vV~~D~RG~g~S~G~~~~ 77 (272)
T PF02129_consen 1 DGVRLAADVYRP-GA-DGGGPFPVILTRTP-YGKGDQTASDLAGANPGPPSARRPFAERGYAVVVQDVRGTGGSEGEFDP 77 (272)
T ss_dssp TS-EEEEEEEEE----TTSSSEEEEEEEES-STCTC-HHHHHHTTCHHSHGGGHHHHHTT-EEEEEE-TTSTTS-S-B-T
T ss_pred CCCEEEEEEEec-CC-CCCCcccEEEEccC-cCCCCCcccchhhhhcccchhHHHHHhCCCEEEEECCcccccCCCcccc
Confidence 899999999999 43 45689999998776 5533210 01100 112349999999999999999887766643
Q ss_pred cccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchhhhhhCCC
Q 044808 523 NGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVLTTILFYP 597 (623)
Q Consensus 523 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~~ 597 (623)
. ..++..|..++++||.+|+|++ +|||++|.||+|+...+++.+.|...||+++.++..|+.....-+.
T Consensus 78 ~-----~~~e~~D~~d~I~W~~~Qpws~-G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p~~~~~d~~~~~~~~g 146 (272)
T PF02129_consen 78 M-----SPNEAQDGYDTIEWIAAQPWSN-GKVGMYGISYGGFTQWAAAARRPPHLKAIVPQSGWSDLYRDSIYPG 146 (272)
T ss_dssp T-----SHHHHHHHHHHHHHHHHCTTEE-EEEEEEEETHHHHHHHHHHTTT-TTEEEEEEESE-SBTCCTSSEET
T ss_pred C-----ChhHHHHHHHHHHHHHhCCCCC-CeEEeeccCHHHHHHHHHHhcCCCCceEEEecccCCcccccchhcC
Confidence 2 6789999999999999999998 8999999999999999999877888899999999999986333333
No 14
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=2.5e-12 Score=137.49 Aligned_cols=198 Identities=12% Similarity=0.022 Sum_probs=138.1
Q ss_pred eeeEECCCCCE-EEEEEeCc---eEEEEECCCCCcccc-ccCccc-eeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCc
Q 044808 153 TAFKVSPNNKL-VAFRENCG---TVCVIDSETGAPAEK-PIQGCL-EFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 153 ~~~~~SPDG~~-lA~~~~~~---~l~v~dl~tg~~~~~-~i~~~~-~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~ 225 (623)
..+.|||||++ ++|+...+ +||++|+++|+.... ..++.. ...||||| +++|+... ...++||..++.++..
T Consensus 191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~-~g~~~Iy~~dl~~g~~ 269 (419)
T PRK04043 191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAP-KGQPDIYLYDTNTKTL 269 (419)
T ss_pred EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEcc-CCCcEEEEEECCCCcE
Confidence 46899999996 77766552 999999999986542 223333 38899999 78888653 2344999999877642
Q ss_pred ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeEEEEeeCCEEEE-EeCCCC-
Q 044808 226 KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDMFVSHRGNQFFI-RRSDGG- 303 (623)
Q Consensus 226 ~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~~~~~dg~~ly~-sn~~g~- 303 (623)
+.+... +.......|||||+.|+|.++..+..+||++|+++++ .+.++.... ....|+|+|+.+++ ++....
T Consensus 270 --~~LT~~--~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~-~~rlt~~g~-~~~~~SPDG~~Ia~~~~~~~~~ 343 (419)
T PRK04043 270 --TQITNY--PGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGS-VEQVVFHGK-NNSSVSTYKNYIVYSSRETNNE 343 (419)
T ss_pred --EEcccC--CCccCccEECCCCCEEEEEECCCCCceEEEEECCCCC-eEeCccCCC-cCceECCCCCEEEEEEcCCCcc
Confidence 333322 2234456799999999998877677899999999886 545543211 12469999999999 654311
Q ss_pred ---CCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECC
Q 044808 304 ---FHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 304 ---~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
..++|+.++++++... .|.....+.. -.++++++.|++.....+...|.+++++
T Consensus 344 ~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~-p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 344 FGKNTFNLYLISTNSDYIR-RLTANGVNQF-PRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred cCCCCcEEEEEECCCCCeE-ECCCCCCcCC-eEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 2378999999876532 2333322221 2466677889999888888889999998
No 15
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.56 E-value=2.3e-14 Score=147.04 Aligned_cols=149 Identities=21% Similarity=0.254 Sum_probs=107.9
Q ss_pred CCCceEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCc
Q 044808 436 ESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDE 515 (623)
Q Consensus 436 ~~~~~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~ 515 (623)
.+.+.+..|.+.+.+|..|.++++.|++. +++.|+||..||. +....+ - .....|+.+||+|+.+|+||-|+
T Consensus 51 ~~~~~vy~v~f~s~~g~~V~g~l~~P~~~---~~~~Pavv~~hGy-g~~~~~--~--~~~~~~a~~G~~vl~~d~rGqg~ 122 (320)
T PF05448_consen 51 TPGVEVYDVSFESFDGSRVYGWLYRPKNA---KGKLPAVVQFHGY-GGRSGD--P--FDLLPWAAAGYAVLAMDVRGQGG 122 (320)
T ss_dssp BSSEEEEEEEEEEGGGEEEEEEEEEES-S---SSSEEEEEEE--T-T--GGG--H--HHHHHHHHTT-EEEEE--TTTSS
T ss_pred CCCEEEEEEEEEccCCCEEEEEEEecCCC---CCCcCEEEEecCC-CCCCCC--c--ccccccccCCeEEEEecCCCCCC
Confidence 34567889999999999999999999854 4789999999984 433111 1 23457899999999999999885
Q ss_pred CChhHHHc------ccccCCC----------chHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeE
Q 044808 516 KGKQWHEN------GKLLNKR----------NTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKV 579 (623)
Q Consensus 516 ~G~~~~~~------~~~~~~~----------~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a 579 (623)
...+.... |....+. ..+.|++.|+++|.+++.+|++||+++|+|.||.+++++++..| ++++
T Consensus 123 ~~~d~~~~~~~~~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~-rv~~ 201 (320)
T PF05448_consen 123 RSPDYRGSSGGTLKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP-RVKA 201 (320)
T ss_dssp SS-B-SSBSSS-SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS-T-SE
T ss_pred CCCCccccCCCCCccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc-cccE
Confidence 44332211 1111111 25799999999999999999999999999999999999999876 5899
Q ss_pred EEecCCcc-chhhhh
Q 044808 580 AVADVPSV-DVLTTI 593 (623)
Q Consensus 580 ~v~~~~~~-d~~~~~ 593 (623)
+++.+|++ |+...+
T Consensus 202 ~~~~vP~l~d~~~~~ 216 (320)
T PF05448_consen 202 AAADVPFLCDFRRAL 216 (320)
T ss_dssp EEEESESSSSHHHHH
T ss_pred EEecCCCccchhhhh
Confidence 99999965 766544
No 16
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=4.6e-12 Score=137.33 Aligned_cols=197 Identities=15% Similarity=0.139 Sum_probs=134.3
Q ss_pred EeeeEECCCCCEEEEEEeCc---eEEEEECCCCCcccc-ccCcc-ceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCc
Q 044808 152 ITAFKVSPNNKLVAFRENCG---TVCVIDSETGAPAEK-PIQGC-LEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~---~l~v~dl~tg~~~~~-~i~~~-~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~ 225 (623)
+..++|||||++|||+.... +|+++|+.+|+.... ..++. ..+.||||| +++|+.... ..++||..++.++..
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-g~~~Iy~~d~~~~~~ 282 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRKVVMSLSQG-GNTDIYTMDLRSGTT 282 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCEEEEEEecC-CCceEEEEECCCCce
Confidence 56789999999999997653 899999999976432 12332 348999999 788876432 234899999987642
Q ss_pred ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccc-eeEEEEeeCCEEEE-EeCCCC
Q 044808 226 KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLG-IDMFVSHRGNQFFI-RRSDGG 303 (623)
Q Consensus 226 ~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~-~~~~~~~dg~~ly~-sn~~g~ 303 (623)
..+... +.....+.|||||++|++.+...+..+||++|++++. .+.+...... ....|+|+|+.+++ +...
T Consensus 283 --~~Lt~~--~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~-- 355 (435)
T PRK05137 283 --TRLTDS--PAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-PRRISFGGGRYSTPVWSPRGDLIAFTKQGG-- 355 (435)
T ss_pred --EEccCC--CCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-eEEeecCCCcccCeEECCCCCEEEEEEcCC--
Confidence 233222 2233457899999999998765556789999998875 5555433221 12468999999999 6543
Q ss_pred CCeEEEEEeCCCCCceeeEEcCCCCceEeE--EEEeCCEEEEEEeeCCc---ceEEEEECCC
Q 044808 304 FHSDVLTCPVDNTFETTVLIPHRERVRVEE--VRLFADHIAVYELEEGL---PKITTYCLPP 360 (623)
Q Consensus 304 ~~~~L~~~d~~~~~~~~~li~~~~d~~i~~--~~~~~~~Lv~~~~~~g~---~~l~v~~l~~ 360 (623)
..++|+.+++++... + ++..... ++. +++.++.|++.....+. .+|++++++.
T Consensus 356 ~~~~i~~~d~~~~~~-~-~lt~~~~--~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 356 GQFSIGVMKPDGSGE-R-ILTSGFL--VEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred CceEEEEEECCCCce-E-eccCCCC--CCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 357899999865432 2 3333222 233 44456778887776655 5899999873
No 17
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.53 E-value=6.5e-14 Score=155.91 Aligned_cols=137 Identities=16% Similarity=0.204 Sum_probs=109.9
Q ss_pred EECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCC--CCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHc
Q 044808 446 AYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPS--SYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHEN 523 (623)
Q Consensus 446 ~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~--~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~ 523 (623)
++++||++|.+.++.|++. ++.|+||+.|| |+.... ..+. ......|+++||+|+.+|+||.|+.+..+..
T Consensus 1 i~~~DG~~L~~~~~~P~~~----~~~P~Il~~~g-yg~~~~~~~~~~-~~~~~~l~~~Gy~vv~~D~RG~g~S~g~~~~- 73 (550)
T TIGR00976 1 VPMRDGTRLAIDVYRPAGG----GPVPVILSRTP-YGKDAGLRWGLD-KTEPAWFVAQGYAVVIQDTRGRGASEGEFDL- 73 (550)
T ss_pred CcCCCCCEEEEEEEecCCC----CCCCEEEEecC-CCCchhhccccc-cccHHHHHhCCcEEEEEeccccccCCCceEe-
Confidence 4689999999998888653 57899999996 443321 1122 0234678999999999999998877654322
Q ss_pred ccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchhhhhh
Q 044808 524 GKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVLTTIL 594 (623)
Q Consensus 524 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~ 594 (623)
.+....+|+.++++||.++++.+ +||+++|+||||++++.++..+|+.++|+|+.+++.|+...+.
T Consensus 74 ----~~~~~~~D~~~~i~~l~~q~~~~-~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv~~~~~~d~~~~~~ 139 (550)
T TIGR00976 74 ----LGSDEAADGYDLVDWIAKQPWCD-GNVGMLGVSYLAVTQLLAAVLQPPALRAIAPQEGVWDLYRDIA 139 (550)
T ss_pred ----cCcccchHHHHHHHHHHhCCCCC-CcEEEEEeChHHHHHHHHhccCCCceeEEeecCcccchhHhhc
Confidence 12568899999999999999988 7999999999999999998888999999999999999886543
No 18
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=8.5e-12 Score=135.23 Aligned_cols=198 Identities=14% Similarity=0.129 Sum_probs=136.8
Q ss_pred EeeeEECCCCCEEEEEEeCc---eEEEEECCCCCcccc-ccCccc-eeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCc
Q 044808 152 ITAFKVSPNNKLVAFRENCG---TVCVIDSETGAPAEK-PIQGCL-EFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~---~l~v~dl~tg~~~~~-~i~~~~-~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~ 225 (623)
+..+.|||||++|||+.... +|+++|+.+|+.... ...+.. .+.|+||| +++|+.... +.++||+.++.++..
T Consensus 201 ~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~-g~~~Iy~~d~~~~~~ 279 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKD-GNPEIYVMDLASRQL 279 (430)
T ss_pred eeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccC-CCceEEEEECCCCCe
Confidence 45789999999999987654 899999999975432 122222 48999999 788876432 234899999987642
Q ss_pred ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCc-cceeEEEEeeCCEEEE-EeCCCC
Q 044808 226 KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWH-LGIDMFVSHRGNQFFI-RRSDGG 303 (623)
Q Consensus 226 ~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~-~~~~~~~~~dg~~ly~-sn~~g~ 303 (623)
..+... ......+.|||||++|++.+...+...||++++.+++ .+.+.... ......|+++|+.+++ +..+
T Consensus 280 --~~lt~~--~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~-~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~-- 352 (430)
T PRK00178 280 --SRVTNH--PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR-AERVTFVGNYNARPRLSADGKTLVMVHRQD-- 352 (430)
T ss_pred --EEcccC--CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEeecCCCCccceEECCCCCEEEEEEccC--
Confidence 333322 2223456899999999998765566789999998876 54443221 1112358899999999 6554
Q ss_pred CCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECC
Q 044808 304 FHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 304 ~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
..++|+.+|+.++.. +.+.....+... .+++.++.+++...+++..+|++++++
T Consensus 353 ~~~~l~~~dl~tg~~-~~lt~~~~~~~p-~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 353 GNFHVAAQDLQRGSV-RILTDTSLDESP-SVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred CceEEEEEECCCCCE-EEccCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEECC
Confidence 257899999987643 223322222222 455667889888888888899999987
No 19
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.52 E-value=1.4e-13 Score=147.20 Aligned_cols=137 Identities=17% Similarity=0.136 Sum_probs=106.3
Q ss_pred CceEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCC
Q 044808 438 NYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKG 517 (623)
Q Consensus 438 ~~~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G 517 (623)
.+..+.+.++..||.+|++++..|+. +++.|+||. |||++......|. .....|+++||+|+.+|+||.|+..
T Consensus 165 ~~~~e~v~i~~~~g~~l~g~l~~P~~----~~~~P~Vli-~gG~~~~~~~~~~--~~~~~La~~Gy~vl~~D~pG~G~s~ 237 (414)
T PRK05077 165 PGELKELEFPIPGGGPITGFLHLPKG----DGPFPTVLV-CGGLDSLQTDYYR--LFRDYLAPRGIAMLTIDMPSVGFSS 237 (414)
T ss_pred CCceEEEEEEcCCCcEEEEEEEECCC----CCCccEEEE-eCCcccchhhhHH--HHHHHHHhCCCEEEEECCCCCCCCC
Confidence 34578999999999899999888863 357899885 6666654333455 5567889999999999999976532
Q ss_pred hhHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccc
Q 044808 518 KQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVD 588 (623)
Q Consensus 518 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 588 (623)
. +. ..........++++||.+.+++|++||+++|+|+||++++.++..+|++++++|+..|+++
T Consensus 238 ~-~~------~~~d~~~~~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~V~~~~~~~ 301 (414)
T PRK05077 238 K-WK------LTQDSSLLHQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAVACLGPVVH 301 (414)
T ss_pred C-CC------ccccHHHHHHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEEEEECCccc
Confidence 1 10 1112222335788999999999999999999999999999998888999999999999876
No 20
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=6.2e-12 Score=135.31 Aligned_cols=201 Identities=10% Similarity=-0.017 Sum_probs=129.4
Q ss_pred eeeEECCCCCE--EEEEEeCc---eEEEEECCCCCcccc-ccCccc-eeEEecCC-eEEEEEeCCCCCCeEEEE--ECCC
Q 044808 153 TAFKVSPNNKL--VAFRENCG---TVCVIDSETGAPAEK-PIQGCL-EFEWAGDE-AFLYTRRNAIAEPQVWFH--KLGE 222 (623)
Q Consensus 153 ~~~~~SPDG~~--lA~~~~~~---~l~v~dl~tg~~~~~-~i~~~~-~~~WspDg-~l~y~~~d~~~~~~v~~~--~lgt 222 (623)
..++|||||+. +||..... +||++++.+|+.... ..++.. .++||||| +|+|+.... +.+++|.+ ++.+
T Consensus 188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~-g~~di~~~~~~~~~ 266 (428)
T PRK01029 188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRY-GNPDLFIQSFSLET 266 (428)
T ss_pred ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCC-CCcceeEEEeeccc
Confidence 46899999998 45566544 999999999975432 233333 39999999 888887432 23366665 3433
Q ss_pred CC-cccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-ceeecCCCccc-eeEEEEeeCCEEEE-E
Q 044808 223 EQ-SKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-TLWFLPPWHLG-IDMFVSHRGNQFFI-R 298 (623)
Q Consensus 223 ~~-~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l~~~~~~-~~~~~~~dg~~ly~-s 298 (623)
+. .+.+.+.... ......+.|||||++|++.+...+...||++++.... ..+.++..... ....|+|||+.|++ +
T Consensus 267 g~~g~~~~lt~~~-~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~ 345 (428)
T PRK01029 267 GAIGKPRRLLNEA-FGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCS 345 (428)
T ss_pred CCCCcceEeecCC-CCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEE
Confidence 21 1223343321 1122357899999999997765556789999886422 24455443222 23468999999999 6
Q ss_pred eCCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEE--eCCEEEEEEeeCCcceEEEEECCC
Q 044808 299 RSDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRL--FADHIAVYELEEGLPKITTYCLPP 360 (623)
Q Consensus 299 n~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~--~~~~Lv~~~~~~g~~~l~v~~l~~ 360 (623)
..++ ..+|+.+|++++... .+... . .......+ +++.|++....++...|+++++++
T Consensus 346 ~~~g--~~~I~v~dl~~g~~~-~Lt~~-~-~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~ 404 (428)
T PRK01029 346 VIKG--VRQICVYDLATGRDY-QLTTS-P-ENKESPSWAIDSLHLVYSAGNSNESELYLISLIT 404 (428)
T ss_pred cCCC--CcEEEEEECCCCCeE-EccCC-C-CCccceEECCCCCEEEEEECCCCCceEEEEECCC
Confidence 6542 568999999877542 23322 1 12334444 556788888777888899999884
No 21
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.6e-12 Score=138.76 Aligned_cols=198 Identities=13% Similarity=0.045 Sum_probs=135.5
Q ss_pred EeeeEECCCCCEEEEEEeCc---eEEEEECCCCCcccc-ccCccc-eeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCc
Q 044808 152 ITAFKVSPNNKLVAFRENCG---TVCVIDSETGAPAEK-PIQGCL-EFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~---~l~v~dl~tg~~~~~-~i~~~~-~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~ 225 (623)
+..++|||||++|||+.+.. +|+++|+.+|+.... ..++.. .++|+||| +++|+...+ +.++||..++.++..
T Consensus 198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~-g~~~Iy~~d~~~~~~ 276 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRD-GNSQIYTVNADGSGL 276 (427)
T ss_pred cccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccC-CCceEEEEECCCCCc
Confidence 45789999999999998654 899999999976432 133322 49999999 788876432 234899999866532
Q ss_pred ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCC-ccceeEEEEeeCCEEEE-EeCCCC
Q 044808 226 KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPW-HLGIDMFVSHRGNQFFI-RRSDGG 303 (623)
Q Consensus 226 ~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~-~~~~~~~~~~dg~~ly~-sn~~g~ 303 (623)
..+... ......+.|||||++|++.+...+...||.+++.++. .+.+... .......|+|+|+.+++ ++.+
T Consensus 277 --~~lt~~--~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~-- 349 (427)
T PRK02889 277 --RRLTQS--SGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGA-AQRVTFTGSYNTSPRISPDGKLLAYISRVG-- 349 (427)
T ss_pred --EECCCC--CCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCc-eEEEecCCCCcCceEECCCCCEEEEEEccC--
Confidence 223221 2233456799999999987665556789999988765 4444322 11223468999999999 7654
Q ss_pred CCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECC
Q 044808 304 FHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 304 ~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
..+.|+.+++.++.. +.+.....+..+ .++.+++.|++....+|...|++++++
T Consensus 350 g~~~I~v~d~~~g~~-~~lt~~~~~~~p-~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 350 GAFKLYVQDLATGQV-TALTDTTRDESP-SFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred CcEEEEEEECCCCCe-EEccCCCCccCc-eECCCCCEEEEEEecCCCEEEEEEECC
Confidence 247899999877643 233332222111 455567789999988898889999886
No 22
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=2.9e-11 Score=130.52 Aligned_cols=197 Identities=9% Similarity=0.002 Sum_probs=134.7
Q ss_pred EeeeEECCCCCEEEEEEeCc---eEEEEECCCCCcccc-ccCcc-ceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCc
Q 044808 152 ITAFKVSPNNKLVAFRENCG---TVCVIDSETGAPAEK-PIQGC-LEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~---~l~v~dl~tg~~~~~-~i~~~-~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~ 225 (623)
+..++|||||++|||..... +|+++|+.+|+.... .+++. ..++||||| +++|+.... +..+||.+++.++..
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~La~~~~~~-g~~~I~~~d~~tg~~ 279 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT-GSLNLYVMDLASGQI 279 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEEEEEEcCC-CCcEEEEEECCCCCE
Confidence 56789999999999987543 899999999975431 23332 249999999 788875422 223899999987642
Q ss_pred ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccc-eeEEEEeeCCEEEE-EeCCCC
Q 044808 226 KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLG-IDMFVSHRGNQFFI-RRSDGG 303 (623)
Q Consensus 226 ~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~-~~~~~~~dg~~ly~-sn~~g~ 303 (623)
..+.... .....+.|||||++|++.+.......||.+++.++. .+.+...... ....|+|||+.+++ +..++
T Consensus 280 --~~lt~~~--~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g- 353 (429)
T PRK03629 280 --RQVTDGR--SNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGG- 353 (429)
T ss_pred --EEccCCC--CCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC-eEEeecCCCCccCEEECCCCCEEEEEEccCC-
Confidence 2333221 223467899999999988765556799999998876 5444332211 22468999999988 66542
Q ss_pred CCeEEEEEeCCCCCceeeEEcCCC-CceEeEEEEeCCEEEEEEeeCCcceEEEEECC
Q 044808 304 FHSDVLTCPVDNTFETTVLIPHRE-RVRVEEVRLFADHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 304 ~~~~L~~~d~~~~~~~~~li~~~~-d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
...|+.+|++++... .+.... +.. -.+++++..|++...+++...|++++++
T Consensus 354 -~~~I~~~dl~~g~~~--~Lt~~~~~~~-p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 354 -QQHIAKQDLATGGVQ--VLTDTFLDET-PSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred -CceEEEEECCCCCeE--EeCCCCCCCC-ceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 467999998776432 222221 211 1455667788888887777889999987
No 23
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1e-11 Score=133.59 Aligned_cols=248 Identities=13% Similarity=0.077 Sum_probs=154.5
Q ss_pred eeEECCCCCEEEEEEeCc---------eEEEEECCCCCccccccCc--cceeEEecCC-e--EEEEEeCCCCCCeEEEEE
Q 044808 154 AFKVSPNNKLVAFRENCG---------TVCVIDSETGAPAEKPIQG--CLEFEWAGDE-A--FLYTRRNAIAEPQVWFHK 219 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~---------~l~v~dl~tg~~~~~~i~~--~~~~~WspDg-~--l~y~~~d~~~~~~v~~~~ 219 (623)
...++ +++|||+.... .|+++|..++...+.+-.. ...++||||| + ++|++... ++++||+++
T Consensus 141 ~~g~~--~~~iayv~~~~~~~~~~~~~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~-g~~~I~~~~ 217 (428)
T PRK01029 141 VPGIS--SGKIIFSLSTTNSDTELKQGELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKL-GVPKIFLGS 217 (428)
T ss_pred CCccc--cCEEEEEEeeCCcccccccceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccC-CCceEEEEE
Confidence 34555 99999997532 7999999988765422221 2349999999 5 66676543 456999999
Q ss_pred CCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEE--ECCCCC--ceeecCCCccc--eeEEEEeeCC
Q 044808 220 LGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYF--DVSRPE--TLWFLPPWHLG--IDMFVSHRGN 293 (623)
Q Consensus 220 lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~--dl~~~~--~~~~l~~~~~~--~~~~~~~dg~ 293 (623)
+.++.. ..|..-+ .....+.|||||++|++.+...+..++|+. ++.++. ..+.++....+ ....|+|||+
T Consensus 218 l~~g~~--~~lt~~~--g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~ 293 (428)
T PRK01029 218 LENPAG--KKILALQ--GNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGT 293 (428)
T ss_pred CCCCCc--eEeecCC--CCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCC
Confidence 988743 3332211 123357899999999997754455577774 555421 24455543222 2357999999
Q ss_pred EEEE-EeCCCCCCeEEEEEeCCCC-CceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCCCcccccCC
Q 044808 294 QFFI-RRSDGGFHSDVLTCPVDNT-FETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGG 371 (623)
Q Consensus 294 ~ly~-sn~~g~~~~~L~~~d~~~~-~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~ 371 (623)
.|++ ++.++ +.+|+.+++... ...+.+........--.++++++.|++....++..+|+++++++ |+ .
T Consensus 294 ~Laf~s~~~g--~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~-g~-~------ 363 (428)
T PRK01029 294 RLVFVSNKDG--RPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLAT-GR-D------ 363 (428)
T ss_pred EEEEEECCCC--CceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCC-CC-e------
Confidence 9999 87653 457888877532 21222222221111124556778899988888888999999985 43 1
Q ss_pred ceeecCCCceEEEeeeccccCCcCCceEEEEeecCCCCCeEEEEECCCCcEEEE
Q 044808 372 RTVDIFKSELCISRIHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTGISVLK 425 (623)
Q Consensus 372 ~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~ 425 (623)
+.+.-. ...+ ....++++++.++|.... .....+|.+|+.+++.+.+
T Consensus 364 ~~Lt~~--~~~~----~~p~wSpDG~~L~f~~~~-~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 364 YQLTTS--PENK----ESPSWAIDSLHLVYSAGN-SNESELYLISLITKKTRKI 410 (428)
T ss_pred EEccCC--CCCc----cceEECCCCCEEEEEECC-CCCceEEEEECCCCCEEEe
Confidence 222211 1111 123446778888776543 3457899999988775544
No 24
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.49 E-value=9.6e-14 Score=135.33 Aligned_cols=126 Identities=12% Similarity=0.122 Sum_probs=95.5
Q ss_pred EEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHH-CCcEEEEEeccCCCcCCh--hHHHcccccCCCchH
Q 044808 457 SIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILD-RGIIFAIAHVRGGDEKGK--QWHENGKLLNKRNTF 533 (623)
Q Consensus 457 ~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~RG~~~~G~--~~~~~~~~~~~~~~~ 533 (623)
+++.|++. ++++|+||++||+.+........ .....+++ .||+|+.||+||++..+. +|........+....
T Consensus 2 ~ly~P~~~---~~~~P~vv~lHG~~~~~~~~~~~--~~~~~~a~~~g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~ 76 (212)
T TIGR01840 2 YVYVPAGL---TGPRALVLALHGCGQTASAYVID--WGWKAAADRYGFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEV 76 (212)
T ss_pred EEEcCCCC---CCCCCEEEEeCCCCCCHHHHhhh--cChHHHHHhCCeEEEecCCcCccccCCCCCCCCccccCCCCccH
Confidence 56667764 46789999999987654322211 12344555 699999999999875443 344333233345678
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCcc
Q 044808 534 TDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSV 587 (623)
Q Consensus 534 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 587 (623)
.|+...++++.++..+|++||++.|.|+||++++.++.++|++|+++++..|..
T Consensus 77 ~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~~~~g~~ 130 (212)
T TIGR01840 77 ESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGASNAGLP 130 (212)
T ss_pred HHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEEeecCCc
Confidence 899999999999888999999999999999999999999999999998887754
No 25
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.3e-11 Score=130.14 Aligned_cols=237 Identities=12% Similarity=0.075 Sum_probs=154.7
Q ss_pred CEEEEEEe-Cc----eEEEEECCCCCccccccCccc-eeEEecCC-e-EEEEEeCCCCCCeEEEEECCCCCcccEEEEee
Q 044808 162 KLVAFREN-CG----TVCVIDSETGAPAEKPIQGCL-EFEWAGDE-A-FLYTRRNAIAEPQVWFHKLGEEQSKDTCLYRT 233 (623)
Q Consensus 162 ~~lA~~~~-~~----~l~v~dl~tg~~~~~~i~~~~-~~~WspDg-~-l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~~~ 233 (623)
.++||... .+ +|++.|..+.....-...+.. .+.||||| + ++|++... .+++||++++.+++ .+.+...
T Consensus 155 ~r~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~~~~~p~wSpDG~~~i~y~s~~~-~~~~Iyv~dl~tg~--~~~lt~~ 231 (419)
T PRK04043 155 KRKVVFSKYTGPKKSNIVLADYTLTYQKVIVKGGLNIFPKWANKEQTAFYYTSYGE-RKPTLYKYNLYTGK--KEKIASS 231 (419)
T ss_pred eeEEEEEEccCCCcceEEEECCCCCceeEEccCCCeEeEEECCCCCcEEEEEEccC-CCCEEEEEECCCCc--EEEEecC
Confidence 45666654 22 899999987653321222322 49999999 5 66776542 24599999998874 3455432
Q ss_pred cCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcc-ceeEEEEeeCCEEEE-EeCCCCCCeEEEEE
Q 044808 234 REDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHL-GIDMFVSHRGNQFFI-RRSDGGFHSDVLTC 311 (623)
Q Consensus 234 ~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~-~~~~~~~~dg~~ly~-sn~~g~~~~~L~~~ 311 (623)
+.......|||||++|++.....+..+||+++++++. .+.++.... .....|+|||++|+| +++.+ ..+||.+
T Consensus 232 --~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g--~~~Iy~~ 306 (419)
T PRK04043 232 --QGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLG--YPNIFMK 306 (419)
T ss_pred --CCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCC--CceEEEE
Confidence 2234456799999999998766667899999998886 777765432 233469999999999 88753 4689999
Q ss_pred eCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeC------CcceEEEEECCCCCCCcccccCCceeecCCCceEEEe
Q 044808 312 PVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEE------GLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCISR 385 (623)
Q Consensus 312 d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~------g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~~~~ 385 (623)
|++++...+ +..... . ...+++++++|++..... +..+|+++++++ |. . +.+.... ..
T Consensus 307 dl~~g~~~r-lt~~g~-~-~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~-g~-~------~~LT~~~---~~-- 370 (419)
T PRK04043 307 KLNSGSVEQ-VVFHGK-N-NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS-DY-I------RRLTANG---VN-- 370 (419)
T ss_pred ECCCCCeEe-CccCCC-c-CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC-CC-e------EECCCCC---Cc--
Confidence 998765433 322221 1 236777889999888765 446899999885 43 2 2222111 11
Q ss_pred eeccccCCcCCceEEEEeecCCCCCeEEEEECCCCcEEEE
Q 044808 386 IHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTGISVLK 425 (623)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~ 425 (623)
....+++|+..++|.... ..-..++.+++..+....+
T Consensus 371 --~~p~~SPDG~~I~f~~~~-~~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 371 --QFPRFSSDGGSIMFIKYL-GNQSALGIIRLNYNKSFLF 407 (419)
T ss_pred --CCeEECCCCCEEEEEEcc-CCcEEEEEEecCCCeeEEe
Confidence 123457788888887543 3344688888866544433
No 26
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.6e-11 Score=131.37 Aligned_cols=197 Identities=15% Similarity=0.071 Sum_probs=135.3
Q ss_pred EeeeEECCCCCEEEEEEeCc---eEEEEECCCCCcccc-ccCccc-eeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCc
Q 044808 152 ITAFKVSPNNKLVAFRENCG---TVCVIDSETGAPAEK-PIQGCL-EFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~---~l~v~dl~tg~~~~~-~i~~~~-~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~ 225 (623)
+..++|||||++|||+.... +|+++|+.+|+.... ..++.. .+.|+||| +++|+.... +.++||++++.++..
T Consensus 206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~-g~~~Iy~~d~~~g~~ 284 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRRLALTLSRD-GNPEIYVMDLGSRQL 284 (433)
T ss_pred cccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCCEEEEEEeCC-CCceEEEEECCCCCe
Confidence 45789999999999997554 899999999876432 223333 48999999 787776432 234899999987642
Q ss_pred ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCc-cceeEEEEeeCCEEEE-EeCCCC
Q 044808 226 KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWH-LGIDMFVSHRGNQFFI-RRSDGG 303 (623)
Q Consensus 226 ~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~-~~~~~~~~~dg~~ly~-sn~~g~ 303 (623)
..+... ......+.|||||++|++.+...+...||.+++.+++ .+.++... ......|+|+|+.+++ +..+
T Consensus 285 --~~lt~~--~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~-- 357 (433)
T PRK04922 285 --TRLTNH--FGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS-AERLTFQGNYNARASVSPDGKKIAMVHGSG-- 357 (433)
T ss_pred --EECccC--CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC-eEEeecCCCCccCEEECCCCCEEEEEECCC--
Confidence 223221 1223457899999999998765556789999998876 55444221 1223468999999999 6543
Q ss_pred CCeEEEEEeCCCCCceeeEEcCC-CCceEeEEEEeCCEEEEEEeeCCcceEEEEECC
Q 044808 304 FHSDVLTCPVDNTFETTVLIPHR-ERVRVEEVRLFADHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 304 ~~~~L~~~d~~~~~~~~~li~~~-~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
..++|+.+++.++.. + .+.+. .+..+ .++.+++.|++.....+..+|++++++
T Consensus 358 ~~~~I~v~d~~~g~~-~-~Lt~~~~~~~p-~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 358 GQYRIAVMDLSTGSV-R-TLTPGSLDESP-SFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred CceeEEEEECCCCCe-E-ECCCCCCCCCc-eECCCCCEEEEEEecCCceEEEEEECC
Confidence 357899999876543 2 23332 22211 455566788888888888899999987
No 27
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=3.3e-11 Score=130.69 Aligned_cols=241 Identities=11% Similarity=0.030 Sum_probs=156.1
Q ss_pred CCCEEEEEEeCc-------eEEEEECCCCCccccccC--ccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCcccEE
Q 044808 160 NNKLVAFRENCG-------TVCVIDSETGAPAEKPIQ--GCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQSKDTC 229 (623)
Q Consensus 160 DG~~lA~~~~~~-------~l~v~dl~tg~~~~~~i~--~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~~d~l 229 (623)
=..+|||..+.+ +|+++|..++.....+-. .+..+.||||| +++|++... ..++||++++.++.. ..
T Consensus 164 f~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~-g~~~i~~~dl~~g~~--~~ 240 (435)
T PRK05137 164 FDTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYAN-GRPRVYLLDLETGQR--EL 240 (435)
T ss_pred CCCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecC-CCCEEEEEECCCCcE--EE
Confidence 356799986532 899999977654331111 23359999999 899987643 235899999987742 33
Q ss_pred EEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccc-eeEEEEeeCCEEEE-EeCCCCCCeE
Q 044808 230 LYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLG-IDMFVSHRGNQFFI-RRSDGGFHSD 307 (623)
Q Consensus 230 v~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~-~~~~~~~dg~~ly~-sn~~g~~~~~ 307 (623)
+... +.....+.|||||+.|++.....+..+||++|++++. .+.++..... ....|+|||+.++| ++..+ ..+
T Consensus 241 l~~~--~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g--~~~ 315 (435)
T PRK05137 241 VGNF--PGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT-TTRLTDSPAIDTSPSYSPDGSQIVFESDRSG--SPQ 315 (435)
T ss_pred eecC--CCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCc-eEEccCCCCccCceeEcCCCCEEEEEECCCC--CCe
Confidence 3221 2223456899999999887665566799999999886 6666553321 23468999999999 87653 458
Q ss_pred EEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCCCcccccCCceeecCCCceEEEeee
Q 044808 308 VLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCISRIH 387 (623)
Q Consensus 308 L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~~~~~~ 387 (623)
|+.++++++...+ +........--.++++++.|++.....+..+|+++++++ ... +.+. .. ..+
T Consensus 316 Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~--~~~------~~lt--~~-~~~---- 379 (435)
T PRK05137 316 LYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG--SGE------RILT--SG-FLV---- 379 (435)
T ss_pred EEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC--Cce------Eecc--CC-CCC----
Confidence 9999987654322 332221111123556678888888777767899999863 321 1121 11 112
Q ss_pred ccccCCcCCceEEEEeecCCCC--CeEEEEECCCCcEEE
Q 044808 388 GIRDSQFSSSILRICFYTMRMP--FSAYDYDMNTGISVL 424 (623)
Q Consensus 388 ~~~~~~~~~~~~~~~~ss~~~P--~~~~~~d~~~~~~~~ 424 (623)
....+++|++.+++.......+ ..+|.+|+.+++.+.
T Consensus 380 ~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~ 418 (435)
T PRK05137 380 EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNERE 418 (435)
T ss_pred CCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEE
Confidence 2345577888888876655443 589999987766543
No 28
>PRK13604 luxD acyl transferase; Provisional
Probab=99.43 E-value=1.2e-12 Score=131.57 Aligned_cols=140 Identities=13% Similarity=0.085 Sum_probs=106.2
Q ss_pred eEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCC-CcCCh
Q 044808 440 VTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGG-DEKGK 518 (623)
Q Consensus 440 ~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~-~~~G~ 518 (623)
.+....+.+.||.+|.+|+..|++. ...+.|+|+.+|| ++.... .|. .....|+++||+|+..|.||+ |+.+.
T Consensus 8 ~~~~~~~~~~dG~~L~Gwl~~P~~~--~~~~~~~vIi~HG-f~~~~~-~~~--~~A~~La~~G~~vLrfD~rg~~GeS~G 81 (307)
T PRK13604 8 KTIDHVICLENGQSIRVWETLPKEN--SPKKNNTILIASG-FARRMD-HFA--GLAEYLSSNGFHVIRYDSLHHVGLSSG 81 (307)
T ss_pred cchhheEEcCCCCEEEEEEEcCccc--CCCCCCEEEEeCC-CCCChH-HHH--HHHHHHHHCCCEEEEecCCCCCCCCCC
Confidence 3444556788999999998888753 2467899999998 555432 345 667788999999999999886 77666
Q ss_pred hHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchhhhhh
Q 044808 519 QWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVLTTIL 594 (623)
Q Consensus 519 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~ 594 (623)
+|.+..... ...|+.++++||.+++ .++|++.|+|.||..+..++.. ++ .+++|+.+|+.|+..++.
T Consensus 82 ~~~~~t~s~----g~~Dl~aaid~lk~~~---~~~I~LiG~SmGgava~~~A~~-~~-v~~lI~~sp~~~l~d~l~ 148 (307)
T PRK13604 82 TIDEFTMSI----GKNSLLTVVDWLNTRG---INNLGLIAASLSARIAYEVINE-ID-LSFLITAVGVVNLRDTLE 148 (307)
T ss_pred ccccCcccc----cHHHHHHHHHHHHhcC---CCceEEEEECHHHHHHHHHhcC-CC-CCEEEEcCCcccHHHHHH
Confidence 664432211 3699999999998863 4789999999999998666653 33 799999999999764443
No 29
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=99.43 E-value=6.3e-13 Score=134.95 Aligned_cols=142 Identities=19% Similarity=0.220 Sum_probs=91.6
Q ss_pred CCceEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCC----CC----C----CCCc--hhhhHHHHHCC
Q 044808 437 SNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLG----PS----S----YSNS--IASRLTILDRG 502 (623)
Q Consensus 437 ~~~~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~----~~----~----~~~~--~~~~~~~~~~G 502 (623)
+.|..|++.+.+.++..+|++|+.|++. .++.|+||.+||--+.. .. + .+.. ......|+.+|
T Consensus 84 dGY~~EKv~f~~~p~~~vpaylLvPd~~---~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~G 160 (390)
T PF12715_consen 84 DGYTREKVEFNTTPGSRVPAYLLVPDGA---KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKRG 160 (390)
T ss_dssp TTEEEEEEEE--STTB-EEEEEEEETT-----S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTTT
T ss_pred CCeEEEEEEEEccCCeeEEEEEEecCCC---CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhCC
Confidence 5688999999999999999999999985 57899999988742111 00 0 1110 01246789999
Q ss_pred cEEEEEeccCCCcCChh-----------------HHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHH
Q 044808 503 IIFAIAHVRGGDEKGKQ-----------------WHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGML 565 (623)
Q Consensus 503 ~~v~~~~~RG~~~~G~~-----------------~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l 565 (623)
|||+.+|.+|-||.|.. +...|+...|...++| +.+++||..++.+|++|||++|.|.||+.
T Consensus 161 YVvla~D~~g~GER~~~e~~~~~~~~~~~~la~~~l~lG~S~~G~~~~dd-mr~lDfL~slpeVD~~RIG~~GfSmGg~~ 239 (390)
T PF12715_consen 161 YVVLAPDALGFGERGDMEGAAQGSNYDCQALARNLLMLGRSLAGLMAWDD-MRALDFLASLPEVDPDRIGCMGFSMGGYR 239 (390)
T ss_dssp SEEEEE--TTSGGG-SSCCCTTTTS--HHHHHHHHHHTT--HHHHHHHHH-HHHHHHHCT-TTEEEEEEEEEEEGGGHHH
T ss_pred CEEEEEccccccccccccccccccchhHHHHHHHHHHcCcCHHHHHHHHH-HHHHHHHhcCcccCccceEEEeecccHHH
Confidence 99999999999887641 1222333333445555 55999999999999999999999999999
Q ss_pred HHHHHHhCCCeeeEEEec
Q 044808 566 IGAVLNMRPELFKVAVAD 583 (623)
Q Consensus 566 ~~~~~~~~p~~f~a~v~~ 583 (623)
+.++++..+.+ +|+|+.
T Consensus 240 a~~LaALDdRI-ka~v~~ 256 (390)
T PF12715_consen 240 AWWLAALDDRI-KATVAN 256 (390)
T ss_dssp HHHHHHH-TT---EEEEE
T ss_pred HHHHHHcchhh-HhHhhh
Confidence 99888886554 666554
No 30
>PRK10162 acetyl esterase; Provisional
Probab=99.39 E-value=4e-12 Score=131.69 Aligned_cols=132 Identities=13% Similarity=0.031 Sum_probs=102.5
Q ss_pred ceEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCC-CCCCCchhhhHHHHH-CCcEEEEEeccCCCcC
Q 044808 439 YVTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGP-SSYSNSIASRLTILD-RGIIFAIAHVRGGDEK 516 (623)
Q Consensus 439 ~~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~-~~~~~~~~~~~~~~~-~G~~v~~~~~RG~~~~ 516 (623)
...+.+.+++.+| .|++.+++|+. .+.|+|||+|||..... ...+. .....|+. .|++|+.+|||.+.+.
T Consensus 55 ~~~~~~~i~~~~g-~i~~~~y~P~~-----~~~p~vv~~HGGg~~~g~~~~~~--~~~~~la~~~g~~Vv~vdYrlape~ 126 (318)
T PRK10162 55 MATRAYMVPTPYG-QVETRLYYPQP-----DSQATLFYLHGGGFILGNLDTHD--RIMRLLASYSGCTVIGIDYTLSPEA 126 (318)
T ss_pred ceEEEEEEecCCC-ceEEEEECCCC-----CCCCEEEEEeCCcccCCCchhhh--HHHHHHHHHcCCEEEEecCCCCCCC
Confidence 3477888898888 59999888753 23699999999854332 23444 55667777 4999999999987753
Q ss_pred ChhHHHcccccCCCchHhHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhC------CCeeeEEEecCCcc
Q 044808 517 GKQWHENGKLLNKRNTFTDFIACADYLIKS---NYCSEDNLCIEGGSAGGMLIGAVLNMR------PELFKVAVADVPSV 587 (623)
Q Consensus 517 G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~~~~ 587 (623)
.....++|+.++++|+.++ --+|++||+|+|.|+||.|+++++.+. +..++++|..+|++
T Consensus 127 -----------~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~ 195 (318)
T PRK10162 127 -----------RFPQAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLY 195 (318)
T ss_pred -----------CCCCcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCcc
Confidence 2345789999999999864 237999999999999999998877542 35788999999999
Q ss_pred ch
Q 044808 588 DV 589 (623)
Q Consensus 588 d~ 589 (623)
|+
T Consensus 196 ~~ 197 (318)
T PRK10162 196 GL 197 (318)
T ss_pred CC
Confidence 86
No 31
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=2.8e-10 Score=122.95 Aligned_cols=237 Identities=8% Similarity=0.019 Sum_probs=149.5
Q ss_pred CEEEEEEeCc------eEEEEECCCCCccccccC--ccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCcccEEEEe
Q 044808 162 KLVAFRENCG------TVCVIDSETGAPAEKPIQ--GCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQSKDTCLYR 232 (623)
Q Consensus 162 ~~lA~~~~~~------~l~v~dl~tg~~~~~~i~--~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~~ 232 (623)
++|||..... +|+++|..++.....+-. ....++||||| +++|++... ..+++|++++.+++. ..+..
T Consensus 164 ~riayv~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~-g~~~i~i~dl~~G~~--~~l~~ 240 (429)
T PRK03629 164 TRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAV--RQVAS 240 (429)
T ss_pred CeEEEEEeeCCCCcceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCCe--EEccC
Confidence 7788886532 899999987764331111 12359999999 888887532 334899999977642 33332
Q ss_pred ecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccc-eeEEEEeeCCEEEE-EeCCCCCCeEEEE
Q 044808 233 TREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLG-IDMFVSHRGNQFFI-RRSDGGFHSDVLT 310 (623)
Q Consensus 233 ~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~-~~~~~~~dg~~ly~-sn~~g~~~~~L~~ 310 (623)
.+ .....+.|||||++|++.....+..+||++|++++. .+.++..... ....|+|+|+.|++ ++..+ ..+||.
T Consensus 241 ~~--~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g--~~~Iy~ 315 (429)
T PRK03629 241 FP--RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG--RPQVYK 315 (429)
T ss_pred CC--CCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC-EEEccCCCCCcCceEECCCCCEEEEEeCCCC--CceEEE
Confidence 21 123357899999999987655555689999999886 6666544322 23468999999999 87653 458999
Q ss_pred EeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCCCcccccCCceeecCCCceEEEeeeccc
Q 044808 311 CPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCISRIHGIR 390 (623)
Q Consensus 311 ~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~~~~~~~~~ 390 (623)
++++++...+ +........-..++++++.|++....++...|+++++++ |. . +.+. .. ... ...
T Consensus 316 ~d~~~g~~~~-lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~-g~-~------~~Lt--~~-~~~----~~p 379 (429)
T PRK03629 316 VNINGGAPQR-ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLAT-GG-V------QVLT--DT-FLD----ETP 379 (429)
T ss_pred EECCCCCeEE-eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCC-CC-e------EEeC--CC-CCC----CCc
Confidence 9987764322 322221111123555678888888877878899999875 43 2 2222 11 111 123
Q ss_pred cCCcCCceEEEEeecCCCCCeEEEEECCCCcEE
Q 044808 391 DSQFSSSILRICFYTMRMPFSAYDYDMNTGISV 423 (623)
Q Consensus 391 ~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~ 423 (623)
.+++|+..+++.... .....++.+++..+..+
T Consensus 380 ~~SpDG~~i~~~s~~-~~~~~l~~~~~~G~~~~ 411 (429)
T PRK03629 380 SIAPNGTMVIYSSSQ-GMGSVLNLVSTDGRFKA 411 (429)
T ss_pred eECCCCCEEEEEEcC-CCceEEEEEECCCCCeE
Confidence 456788877765442 22345777787544433
No 32
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=3.8e-10 Score=121.94 Aligned_cols=232 Identities=11% Similarity=0.087 Sum_probs=148.3
Q ss_pred CEEEEEEeCc---eEEEEECCCCCcccccc--CccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCcccEEEEeecC
Q 044808 162 KLVAFRENCG---TVCVIDSETGAPAEKPI--QGCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQSKDTCLYRTRE 235 (623)
Q Consensus 162 ~~lA~~~~~~---~l~v~dl~tg~~~~~~i--~~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~~~~~ 235 (623)
.+|||....+ +|+++|..+.......- ..+.+++||||| +++|+... ..+++||++++.++.. ..+...
T Consensus 164 ~~iayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~-~~~~~I~~~dl~~g~~--~~l~~~-- 238 (427)
T PRK02889 164 TRIAYVIKTGNRYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFE-SKKPVVYVHDLATGRR--RVVANF-- 238 (427)
T ss_pred cEEEEEEccCCccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEcc-CCCcEEEEEECCCCCE--EEeecC--
Confidence 5688887543 89999986554332111 123359999999 78888754 2345899999987742 333221
Q ss_pred CceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcc-ceeEEEEeeCCEEEE-EeCCCCCCeEEEEEeC
Q 044808 236 DLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHL-GIDMFVSHRGNQFFI-RRSDGGFHSDVLTCPV 313 (623)
Q Consensus 236 ~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~-~~~~~~~~dg~~ly~-sn~~g~~~~~L~~~d~ 313 (623)
+.....+.|||||+.|++..+..+..+||.+|+.++. .+.++.... .....|++||++|++ +++.+ +.+||.+++
T Consensus 239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g--~~~Iy~~~~ 315 (427)
T PRK02889 239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGG--APQIYRMPA 315 (427)
T ss_pred CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCC--CcEEEEEEC
Confidence 2233467899999999887665566899999998775 666654322 123469999999999 88653 457999998
Q ss_pred CCCCceeeEEcCC-CCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCCCcccccCCceeecCCCceEEEeeeccccC
Q 044808 314 DNTFETTVLIPHR-ERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCISRIHGIRDS 392 (623)
Q Consensus 314 ~~~~~~~~li~~~-~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~~~~~~~~~~~ 392 (623)
.++.... +..+. .... ..+++++++|++....++..+|+++++++ |+ . +.+. ... .. ....+
T Consensus 316 ~~g~~~~-lt~~g~~~~~-~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~-g~-~------~~lt--~~~-~~----~~p~~ 378 (427)
T PRK02889 316 SGGAAQR-VTFTGSYNTS-PRISPDGKLLAYISRVGGAFKLYVQDLAT-GQ-V------TALT--DTT-RD----ESPSF 378 (427)
T ss_pred CCCceEE-EecCCCCcCc-eEECCCCCEEEEEEccCCcEEEEEEECCC-CC-e------EEcc--CCC-Cc----cCceE
Confidence 7654322 22222 1111 24556678888888777777899999875 33 1 1221 111 11 22345
Q ss_pred CcCCceEEEEeecCCCCCeEEEEECCC
Q 044808 393 QFSSSILRICFYTMRMPFSAYDYDMNT 419 (623)
Q Consensus 393 ~~~~~~~~~~~ss~~~P~~~~~~d~~~ 419 (623)
++++..+++....-. -..+|.++...
T Consensus 379 spdg~~l~~~~~~~g-~~~l~~~~~~g 404 (427)
T PRK02889 379 APNGRYILYATQQGG-RSVLAAVSSDG 404 (427)
T ss_pred CCCCCEEEEEEecCC-CEEEEEEECCC
Confidence 678888888765443 24678888743
No 33
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=2.6e-10 Score=123.37 Aligned_cols=192 Identities=12% Similarity=0.059 Sum_probs=125.1
Q ss_pred EeeeEECCCCCEEEEEEeCc---eEEEEECCCCCcccc-ccCccc-eeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCc
Q 044808 152 ITAFKVSPNNKLVAFRENCG---TVCVIDSETGAPAEK-PIQGCL-EFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~---~l~v~dl~tg~~~~~-~i~~~~-~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~ 225 (623)
+..++|||||++|||+.... +|+++|+.+|+.... .+++.. .++|+||| +++++.... +..+||..++.++..
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~~~-g~~~Iy~~d~~~~~~ 284 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASSKD-GVLNIYVMGANGGTP 284 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEecC-CcEEEEEEECCCCCe
Confidence 56789999999999987643 899999999874321 233322 49999999 788875322 223899999876532
Q ss_pred ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeEEEEeeCCEEEE-EeCCCCC
Q 044808 226 KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDMFVSHRGNQFFI-RRSDGGF 304 (623)
Q Consensus 226 ~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~~~~~dg~~ly~-sn~~g~~ 304 (623)
..+... ......+.|||||++|++.+...+...||.++..++. .+.+.. . +....|+|+|+.|++ +. +
T Consensus 285 --~~lt~~--~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~-~~~l~~-~-~~~~~~SpDG~~ia~~~~-~--- 353 (429)
T PRK01742 285 --SQLTSG--AGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG-ASLVGG-R-GYSAQISADGKTLVMING-D--- 353 (429)
T ss_pred --EeeccC--CCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-eEEecC-C-CCCccCCCCCCEEEEEcC-C---
Confidence 223222 2233467899999999987765566799999987765 433322 1 122358899999888 54 2
Q ss_pred CeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECC
Q 044808 305 HSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 305 ~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
.++.+|+.++... .+.....+..+ .+++.++.|++...+++...+++++.+
T Consensus 354 --~i~~~Dl~~g~~~-~lt~~~~~~~~-~~sPdG~~i~~~s~~g~~~~l~~~~~~ 404 (429)
T PRK01742 354 --NVVKQDLTSGSTE-VLSSTFLDESP-SISPNGIMIIYSSTQGLGKVLQLVSAD 404 (429)
T ss_pred --CEEEEECCCCCeE-EecCCCCCCCc-eECCCCCEEEEEEcCCCceEEEEEECC
Confidence 3777888766432 12222111111 355566778887776666667777766
No 34
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=99.37 E-value=2.3e-12 Score=137.58 Aligned_cols=145 Identities=17% Similarity=0.161 Sum_probs=112.8
Q ss_pred ceEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCC-CCCCCCCC---CchhhhHHHHHCCcEEEEEeccCCC
Q 044808 439 YVTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSY-GLGPSSYS---NSIASRLTILDRGIIFAIAHVRGGD 514 (623)
Q Consensus 439 ~~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~-~~~~~~~~---~~~~~~~~~~~~G~~v~~~~~RG~~ 514 (623)
+....++++.+||++|.+-|++|++. ++.|+|+..+=.| .......+ ...+....|+.+||+|+.+|+||.+
T Consensus 17 ~~~~~v~V~MRDGvrL~~dIy~Pa~~----g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~GYavV~qDvRG~~ 92 (563)
T COG2936 17 YIERDVMVPMRDGVRLAADIYRPAGA----GPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQGYAVVNQDVRGRG 92 (563)
T ss_pred eeeeeeeEEecCCeEEEEEEEccCCC----CCCceeEEeeccccccccccCcchhhcccccceeecCceEEEEecccccc
Confidence 55677999999999999999999864 7899999876333 33321122 1112223799999999999999988
Q ss_pred cCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchhhhh
Q 044808 515 EKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVLTTI 593 (623)
Q Consensus 515 ~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~ 593 (623)
+....|-- ..+ .+.+|-.++++||++|+|++ ++||.+|-||+|+...++++..|--.||++...+..|+....
T Consensus 93 ~SeG~~~~----~~~-~E~~Dg~D~I~Wia~QpWsN-G~Vgm~G~SY~g~tq~~~Aa~~pPaLkai~p~~~~~D~y~d~ 165 (563)
T COG2936 93 GSEGVFDP----ESS-REAEDGYDTIEWLAKQPWSN-GNVGMLGLSYLGFTQLAAAALQPPALKAIAPTEGLVDRYRDD 165 (563)
T ss_pred cCCcccce----ecc-ccccchhHHHHHHHhCCccC-CeeeeecccHHHHHHHHHHhcCCchheeeccccccccccccc
Confidence 76555432 122 48899999999999999998 999999999999999888777666669999999999975443
No 35
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=3.6e-10 Score=122.55 Aligned_cols=247 Identities=11% Similarity=0.085 Sum_probs=154.7
Q ss_pred cEEEeeeEECCCCCEEEEEEeCc-------eEEEEECCCCCcccccc--CccceeEEecCC-eEEEEEeCCCCCCeEEEE
Q 044808 149 NYRITAFKVSPNNKLVAFRENCG-------TVCVIDSETGAPAEKPI--QGCLEFEWAGDE-AFLYTRRNAIAEPQVWFH 218 (623)
Q Consensus 149 ~~~l~~~~~SPDG~~lA~~~~~~-------~l~v~dl~tg~~~~~~i--~~~~~~~WspDg-~l~y~~~d~~~~~~v~~~ 218 (623)
|..+++.... -.++|||..... +|+++|.+++......- ..+..+.||||| +++|++... .+++||++
T Consensus 151 ~~~ltg~~g~-f~~~ia~v~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~-~~~~l~~~ 228 (430)
T PRK00178 151 FEKLTGIKGA-FSTRILYVTAERFSVNTRYTLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQ-KRPRIFVQ 228 (430)
T ss_pred HHHHhCCCcc-ceeeEEEEEeeCCCCCcceEEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCC-CCCEEEEE
Confidence 3344455444 566789976432 69999998776432111 122358999999 888987543 34589999
Q ss_pred ECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcc-ceeEEEEeeCCEEEE
Q 044808 219 KLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHL-GIDMFVSHRGNQFFI 297 (623)
Q Consensus 219 ~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~-~~~~~~~~dg~~ly~ 297 (623)
++.++.. ..+.... .....+.|||||++|++.....+..+||++|++++. .+.++.... .....|+++|+.+++
T Consensus 229 ~l~~g~~--~~l~~~~--g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~~spDg~~i~f 303 (430)
T PRK00178 229 NLDTGRR--EQITNFE--GLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ-LSRVTNHPAIDTEPFWGKDGRTLYF 303 (430)
T ss_pred ECCCCCE--EEccCCC--CCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC-eEEcccCCCCcCCeEECCCCCEEEE
Confidence 9987743 3333222 223347899999999987665556799999999886 666654332 223568999999999
Q ss_pred -EeCCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCCCcccccCCceeec
Q 044808 298 -RRSDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDI 376 (623)
Q Consensus 298 -sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~ 376 (623)
++..+ ..+|+.+++.++...+ +...........++..++.|++....++...|+++++.+ |+ . +.+.
T Consensus 304 ~s~~~g--~~~iy~~d~~~g~~~~-lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t-g~-~------~~lt- 371 (430)
T PRK00178 304 TSDRGG--KPQIYKVNVNGGRAER-VTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR-GS-V------RILT- 371 (430)
T ss_pred EECCCC--CceEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCC-CC-E------EEcc-
Confidence 87653 4689999987765333 222221111124556678898888777777899999885 43 1 1222
Q ss_pred CCCceEEEeeeccccCCcCCceEEEEeecCCCCCeEEEEECCCCc
Q 044808 377 FKSELCISRIHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTGI 421 (623)
Q Consensus 377 p~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~ 421 (623)
..... ....+++++..++++..... -..+|.++...+.
T Consensus 372 -~~~~~-----~~p~~spdg~~i~~~~~~~g-~~~l~~~~~~g~~ 409 (430)
T PRK00178 372 -DTSLD-----ESPSVAPNGTMLIYATRQQG-RGVLMLVSINGRV 409 (430)
T ss_pred -CCCCC-----CCceECCCCCEEEEEEecCC-ceEEEEEECCCCc
Confidence 11111 11244667887777654322 2457888875443
No 36
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=3.5e-10 Score=122.57 Aligned_cols=238 Identities=13% Similarity=0.081 Sum_probs=149.2
Q ss_pred CCEEEEEEeCc-------eEEEEECCCCCcccccc-C-ccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCcccEEE
Q 044808 161 NKLVAFRENCG-------TVCVIDSETGAPAEKPI-Q-GCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQSKDTCL 230 (623)
Q Consensus 161 G~~lA~~~~~~-------~l~v~dl~tg~~~~~~i-~-~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv 230 (623)
+.+|||..... +|+++|..++.....+- . .+.+++|+||| .++|++... ..++||++++.++. ...+
T Consensus 167 ~~~ia~v~~~~~~~~~~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~-~~~~l~~~dl~~g~--~~~l 243 (433)
T PRK04922 167 WTRIAYVTVSGAGGAMRYALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFER-GRSAIYVQDLATGQ--RELV 243 (433)
T ss_pred cceEEEEEEeCCCCCceEEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCC-CCcEEEEEECCCCC--EEEe
Confidence 45677875421 79999997765432111 1 23359999999 799987543 34489999997764 2333
Q ss_pred EeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcc-ceeEEEEeeCCEEEE-EeCCCCCCeEE
Q 044808 231 YRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHL-GIDMFVSHRGNQFFI-RRSDGGFHSDV 308 (623)
Q Consensus 231 ~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~-~~~~~~~~dg~~ly~-sn~~g~~~~~L 308 (623)
... +.....+.|||||++|++.....+..+||++|+.++. .+.+..... .....|+++|+.|++ +++.+ ..+|
T Consensus 244 ~~~--~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g--~~~i 318 (433)
T PRK04922 244 ASF--RGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGG--RPQI 318 (433)
T ss_pred ccC--CCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCC--CceE
Confidence 222 2233457899999999887655556799999999886 555554322 123468999999999 87763 3589
Q ss_pred EEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCCCcccccCCceeecCCCceEEEeeec
Q 044808 309 LTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCISRIHG 388 (623)
Q Consensus 309 ~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~~~~~~~ 388 (623)
|.+++.++...+ +........--.++.++++|++....++..+|+++++.+ |+ . +.+. ... .. .
T Consensus 319 y~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~-g~-~------~~Lt--~~~-~~----~ 382 (433)
T PRK04922 319 YRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLST-GS-V------RTLT--PGS-LD----E 382 (433)
T ss_pred EEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCC-CC-e------EECC--CCC-CC----C
Confidence 999987654322 322221111124556678888887766667899999874 43 1 1121 111 11 1
Q ss_pred cccCCcCCceEEEEeecCCCCCeEEEEECCCCcEE
Q 044808 389 IRDSQFSSSILRICFYTMRMPFSAYDYDMNTGISV 423 (623)
Q Consensus 389 ~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~ 423 (623)
...+++++..+++.... ..-..+|.+++..+..+
T Consensus 383 ~p~~spdG~~i~~~s~~-~g~~~L~~~~~~g~~~~ 416 (433)
T PRK04922 383 SPSFAPNGSMVLYATRE-GGRGVLAAVSTDGRVRQ 416 (433)
T ss_pred CceECCCCCEEEEEEec-CCceEEEEEECCCCceE
Confidence 23456778888776554 23357888988654433
No 37
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.33 E-value=2.1e-11 Score=123.76 Aligned_cols=146 Identities=16% Similarity=0.139 Sum_probs=99.2
Q ss_pred EeeeEEECC-CCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHH-CCcEEEEEec--cCCCcC
Q 044808 441 TESKRAYAS-DGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILD-RGIIFAIAHV--RGGDEK 516 (623)
Q Consensus 441 ~~~~~~~s~-dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~--RG~~~~ 516 (623)
.+.+.+.|. -|.++++.++.|++. . .++.|+|++.||.++......+. ...+.|++ .|++|++||. ||.+..
T Consensus 13 ~~~~~~~s~~~~~~~~~~v~~P~~~-~-~~~~P~vvllHG~~~~~~~~~~~--~~~~~la~~~g~~Vv~Pd~~~~g~~~~ 88 (275)
T TIGR02821 13 QGFYRHKSETCGVPMTFGVFLPPQA-A-AGPVPVLWYLSGLTCTHENFMIK--AGAQRFAAEHGLALVAPDTSPRGTGIA 88 (275)
T ss_pred EEEEEEeccccCCceEEEEEcCCCc-c-CCCCCEEEEccCCCCCccHHHhh--hHHHHHHhhcCcEEEEeCCCCCcCCCC
Confidence 444555554 567888998899875 2 35689999999986544332223 33456665 5999999997 776643
Q ss_pred C----------hhHHHcc-cccC--CCchHhHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEe
Q 044808 517 G----------KQWHENG-KLLN--KRNTFTDFIACADYLIKS-NYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVA 582 (623)
Q Consensus 517 G----------~~~~~~~-~~~~--~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~ 582 (623)
| ..|+-.. ...+ .......+...+..+++. --+|++|++++|+|+||++++.++.++|++|+++++
T Consensus 89 ~~~~~w~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~~ 168 (275)
T TIGR02821 89 GEDDAWDFGKGAGFYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPDRFKSVSA 168 (275)
T ss_pred CCcccccccCCccccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcccceEEEE
Confidence 3 2222111 0011 112234444555555554 348999999999999999999999999999999999
Q ss_pred cCCccchh
Q 044808 583 DVPSVDVL 590 (623)
Q Consensus 583 ~~~~~d~~ 590 (623)
..|++|..
T Consensus 169 ~~~~~~~~ 176 (275)
T TIGR02821 169 FAPIVAPS 176 (275)
T ss_pred ECCccCcc
Confidence 99998753
No 38
>PRK10566 esterase; Provisional
Probab=99.32 E-value=1.2e-11 Score=123.60 Aligned_cols=116 Identities=15% Similarity=0.204 Sum_probs=86.4
Q ss_pred eEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcC--Ch------hHHHcc
Q 044808 453 EIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEK--GK------QWHENG 524 (623)
Q Consensus 453 ~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~--G~------~~~~~~ 524 (623)
.++...++|++. .+++.|+||++||..+.. ..|. .....|+++||.|+.+|+||.|.. |. .|..
T Consensus 11 ~~~~~~~~p~~~--~~~~~p~vv~~HG~~~~~--~~~~--~~~~~l~~~G~~v~~~d~~g~G~~~~~~~~~~~~~~~~-- 82 (249)
T PRK10566 11 GIEVLHAFPAGQ--RDTPLPTVFFYHGFTSSK--LVYS--YFAVALAQAGFRVIMPDAPMHGARFSGDEARRLNHFWQ-- 82 (249)
T ss_pred CcceEEEcCCCC--CCCCCCEEEEeCCCCccc--chHH--HHHHHHHhCCCEEEEecCCcccccCCCccccchhhHHH--
Confidence 455555667642 345789999999965433 2455 667788899999999999996532 11 1110
Q ss_pred cccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeE
Q 044808 525 KLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKV 579 (623)
Q Consensus 525 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a 579 (623)
......+|+.++++||.+++.+|++||+++|+|+||++++.++.++|++.++
T Consensus 83 ---~~~~~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~ 134 (249)
T PRK10566 83 ---ILLQNMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCV 134 (249)
T ss_pred ---HHHHHHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEE
Confidence 0124568888999999999999999999999999999999999888886443
No 39
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=1.2e-09 Score=118.60 Aligned_cols=234 Identities=8% Similarity=0.048 Sum_probs=146.6
Q ss_pred CEEEEEEeCc------eEEEEECCCCCccccc-cC-ccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCcccEEEEe
Q 044808 162 KLVAFRENCG------TVCVIDSETGAPAEKP-IQ-GCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQSKDTCLYR 232 (623)
Q Consensus 162 ~~lA~~~~~~------~l~v~dl~tg~~~~~~-i~-~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~~ 232 (623)
.+|||..... +|+++|..+....... .. .+..+.||||| +++|++... .+++||++++.+++. ..+..
T Consensus 183 ~riayv~~~~~~~~~~~l~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~-g~~~L~~~dl~tg~~--~~lt~ 259 (448)
T PRK04792 183 TRIAYVVVNDKDKYPYQLMIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFEN-RKAEIFVQDIYTQVR--EKVTS 259 (448)
T ss_pred CEEEEEEeeCCCCCceEEEEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecC-CCcEEEEEECCCCCe--EEecC
Confidence 4577765432 8999998776532211 11 22359999999 898987643 344899999987642 33322
Q ss_pred ecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcc-ceeEEEEeeCCEEEE-EeCCCCCCeEEEE
Q 044808 233 TREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHL-GIDMFVSHRGNQFFI-RRSDGGFHSDVLT 310 (623)
Q Consensus 233 ~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~-~~~~~~~~dg~~ly~-sn~~g~~~~~L~~ 310 (623)
.+ .....+.|||||++|++.....+..+||++|+++++ .+.+..... .....|++||+.+++ ++.++ +.+|+.
T Consensus 260 ~~--g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g--~~~Iy~ 334 (448)
T PRK04792 260 FP--GINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGG--KPQIYR 334 (448)
T ss_pred CC--CCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCC--CceEEE
Confidence 21 222356899999999987665566789999999886 666654322 223468999999999 77653 468999
Q ss_pred EeCCCCCceeeEE-cCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCCCcccccCCceeecCCCceEEEeeecc
Q 044808 311 CPVDNTFETTVLI-PHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCISRIHGI 389 (623)
Q Consensus 311 ~d~~~~~~~~~li-~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~~~~~~~~ 389 (623)
++++++...+ +. ....... ..++.++++|++....++..+|+++++++ |+ . +.+. ..... ..
T Consensus 335 ~dl~~g~~~~-Lt~~g~~~~~-~~~SpDG~~l~~~~~~~g~~~I~~~dl~~-g~-~------~~lt--~~~~d-----~~ 397 (448)
T PRK04792 335 VNLASGKVSR-LTFEGEQNLG-GSITPDGRSMIMVNRTNGKFNIARQDLET-GA-M------QVLT--STRLD-----ES 397 (448)
T ss_pred EECCCCCEEE-EecCCCCCcC-eeECCCCCEEEEEEecCCceEEEEEECCC-CC-e------EEcc--CCCCC-----CC
Confidence 9987764332 32 2211111 24556678898888777777899999875 33 1 1111 11001 11
Q ss_pred ccCCcCCceEEEEeecCCCCCeEEEEECCCCc
Q 044808 390 RDSQFSSSILRICFYTMRMPFSAYDYDMNTGI 421 (623)
Q Consensus 390 ~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~ 421 (623)
.++++++..++++...- .-..+|.++...+.
T Consensus 398 ps~spdG~~I~~~~~~~-g~~~l~~~~~~G~~ 428 (448)
T PRK04792 398 PSVAPNGTMVIYSTTYQ-GKQVLAAVSIDGRF 428 (448)
T ss_pred ceECCCCCEEEEEEecC-CceEEEEEECCCCc
Confidence 24467788887765433 23467888874433
No 40
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.32 E-value=2.2e-11 Score=127.15 Aligned_cols=146 Identities=12% Similarity=0.043 Sum_probs=105.0
Q ss_pred CCCCceEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCC
Q 044808 435 DESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGD 514 (623)
Q Consensus 435 ~~~~~~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~ 514 (623)
.+..+..+..++++.||.+|++....|.+. ..+.|+||++||.... ....|. .....|+++||.|+.+|+||.|
T Consensus 26 ~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~---~~~~~~VvllHG~~~~-~~~~~~--~~~~~L~~~Gy~V~~~D~rGhG 99 (330)
T PLN02298 26 ALKGIKGSKSFFTSPRGLSLFTRSWLPSSS---SPPRALIFMVHGYGND-ISWTFQ--STAIFLAQMGFACFALDLEGHG 99 (330)
T ss_pred hccCCccccceEEcCCCCEEEEEEEecCCC---CCCceEEEEEcCCCCC-cceehh--HHHHHHHhCCCEEEEecCCCCC
Confidence 334455667778889999999876666432 2356899999996422 222233 4455688899999999999977
Q ss_pred cCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccch
Q 044808 515 EKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDV 589 (623)
Q Consensus 515 ~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~ 589 (623)
..... .+....-....+|+.+++++|....-.+..++.++|+|.||.+++.++.++|++++++|+..|+.++
T Consensus 100 ~S~~~---~~~~~~~~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~~~~~~ 171 (330)
T PLN02298 100 RSEGL---RAYVPNVDLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVLVAPMCKI 171 (330)
T ss_pred CCCCc---cccCCCHHHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEEecccccC
Confidence 54311 0101111235788999999998765445568999999999999999888999999999999987654
No 41
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=99.32 E-value=2.7e-11 Score=138.19 Aligned_cols=154 Identities=18% Similarity=0.163 Sum_probs=114.8
Q ss_pred CCCCCCceEeeeEEECC-----CCC--eEEEEEEEeCCCccCCCCccEEEEE---cCCCCCC---------------CC-
Q 044808 433 GFDESNYVTESKRAYAS-----DGE--EIPISIVYRKNRVKLDGSDPLLLFG---YGSYGLG---------------PS- 486 (623)
Q Consensus 433 ~~~~~~~~~~~~~~~s~-----dG~--~i~~~l~~~~~~~~~~~~~P~il~~---~Gg~~~~---------------~~- 486 (623)
-|+..+++.|.||+.+. ||. .|.+.|+.|+.. ..+-+.|+|+.. |.|-... ..
T Consensus 162 ~~~~~~~ire~v~Vet~~Dtd~dg~~D~v~~~i~rP~~~-~~g~k~p~i~~aspY~~g~~~~~~~~~~~~~~~~l~~~~~ 240 (767)
T PRK05371 162 VFDTSQLIREVVYVETPVDTDQDGKLDLVKVTIVRPKET-ASGLKVPVIMTASPYYQGTNDVANDKKLHNVDVELYAKPP 240 (767)
T ss_pred ccCcccceEEEEEEeCCCCCCCCCCcceEEEEEECCCcc-CCCCccceEEecCccccCCCCcccccccccCCccccccCC
Confidence 47778888899998874 664 688999999875 333478999853 3332100 00
Q ss_pred --------------------CCCC---chhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHH
Q 044808 487 --------------------SYSN---SIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYL 543 (623)
Q Consensus 487 --------------------~~~~---~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l 543 (623)
+.|. ......+|+.|||+|++.|.||.++.+..|. ..+..+.+|..++++||
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rGYaVV~~D~RGtg~SeG~~~-----~~~~~E~~D~~~vIeWl 315 (767)
T PRK05371 241 RAQFTPLKTQPRKLPVGPAEESFTHINSYSLNDYFLPRGFAVVYVSGIGTRGSDGCPT-----TGDYQEIESMKAVIDWL 315 (767)
T ss_pred ccccccccccccccCCCccchhhccCcchhHHHHHHhCCeEEEEEcCCCCCCCCCcCc-----cCCHHHHHHHHHHHHHH
Confidence 0010 1123478999999999999999887655542 23467899999999999
Q ss_pred H---------------HcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchhhhh
Q 044808 544 I---------------KSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVLTTI 593 (623)
Q Consensus 544 ~---------------~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~ 593 (623)
. +++|++ +|||++|.||||++..++++..|+.++|+|+.+|+.||...+
T Consensus 316 ~~~~~~~~d~~~~~~~kq~Wsn-GkVGm~G~SY~G~~~~~aAa~~pp~LkAIVp~a~is~~yd~y 379 (767)
T PRK05371 316 NGRATAYTDRTRGKEVKADWSN-GKVAMTGKSYLGTLPNAVATTGVEGLETIIPEAAISSWYDYY 379 (767)
T ss_pred hhCCccccccccccccccCCCC-CeeEEEEEcHHHHHHHHHHhhCCCcceEEEeeCCCCcHHHHh
Confidence 9 355665 899999999999999998888888899999999999987544
No 42
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=99.31 E-value=2.7e-10 Score=119.91 Aligned_cols=238 Identities=15% Similarity=0.120 Sum_probs=144.2
Q ss_pred EeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCc-------------------c-ceeEEecCC-eEEEEEeCCC
Q 044808 152 ITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQG-------------------C-LEFEWAGDE-AFLYTRRNAI 210 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~-------------------~-~~~~WspDg-~l~y~~~d~~ 210 (623)
+..+.|||||++|||+.+. +||++++.+++..+.+-++ . .++.||||| +|+|.+.|+.
T Consensus 45 ~~~~~~sP~g~~~~~v~~~-nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~ 123 (353)
T PF00930_consen 45 LQDAKWSPDGKYIAFVRDN-NLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDER 123 (353)
T ss_dssp BSEEEE-SSSTEEEEEETT-EEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-T
T ss_pred cccceeecCCCeeEEEecC-ceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCc
Confidence 4568999999999999876 8999999988655321111 1 238999999 8999998753
Q ss_pred C---------------C---------------C--eEEEEECCCCCcccEEEEe---ecCCceeEEEEEcCCCcEEEEEe
Q 044808 211 A---------------E---------------P--QVWFHKLGEEQSKDTCLYR---TREDLFDLTLEASESKKFLFVKS 255 (623)
Q Consensus 211 ~---------------~---------------~--~v~~~~lgt~~~~d~lv~~---~~~~~~~~~~~~S~Dg~~l~i~s 255 (623)
. . | +|+++++.++... .+-.. .....+...+.|++|++.|++..
T Consensus 124 ~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~ 202 (353)
T PF00930_consen 124 EVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQW 202 (353)
T ss_dssp TS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCC-EE---HHHHTSSEEEEEEEEEETTEEEEEEE
T ss_pred CCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEE-EeeeccccCCCccCcccceecCCCcEEEEEE
Confidence 1 1 2 3444444443221 11111 12234566789999999777766
Q ss_pred ecce--eeEEEEEECCCCCceeecCCCcc----ce--eEEEE-eeCCEEEE-EeCCCCCCeEEEEEeCCCCCceeeEEcC
Q 044808 256 KTKV--TGFVYYFDVSRPETLWFLPPWHL----GI--DMFVS-HRGNQFFI-RRSDGGFHSDVLTCPVDNTFETTVLIPH 325 (623)
Q Consensus 256 ~~~~--~s~l~~~dl~~~~~~~~l~~~~~----~~--~~~~~-~dg~~ly~-sn~~g~~~~~L~~~d~~~~~~~~~li~~ 325 (623)
.+.. ...++++|++++. .+.+..... .. ...+. ++++.+++ +.++| ..+|+.++..++.. +++..+
T Consensus 203 ~nR~q~~~~l~~~d~~tg~-~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G--~~hly~~~~~~~~~-~~lT~G 278 (353)
T PF00930_consen 203 LNRDQNRLDLVLCDASTGE-TRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDG--YRHLYLYDLDGGKP-RQLTSG 278 (353)
T ss_dssp EETTSTEEEEEEEEECTTT-CEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTS--SEEEEEEETTSSEE-EESS-S
T ss_pred cccCCCEEEEEEEECCCCc-eeEEEEecCCcceeeecccccccCCCCEEEEEEEcCC--CcEEEEEcccccce-eccccC
Confidence 5543 4678888988775 222211110 10 12233 67888888 88764 57899999877642 345555
Q ss_pred CCCc-eEeEEEEeCCEEEEEEeeCC--cceEEEEECC-CCCCCcccccCCceeecCCCc-eEEEeeeccccCCcCCceEE
Q 044808 326 RERV-RVEEVRLFADHIAVYELEEG--LPKITTYCLP-PVGEPLKTLQGGRTVDIFKSE-LCISRIHGIRDSQFSSSILR 400 (623)
Q Consensus 326 ~~d~-~i~~~~~~~~~Lv~~~~~~g--~~~l~v~~l~-~~g~~~~~l~~~~~i~~p~~~-~~~~~~~~~~~~~~~~~~~~ 400 (623)
..++ .+..++..++.|++....+. ...|+.++++ . |. + +.++-.... +. ..++++++.++
T Consensus 279 ~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~-~~-~------~~LT~~~~~~~~-------~~~Spdg~y~v 343 (353)
T PF00930_consen 279 DWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG-GE-P------KCLTCEDGDHYS-------ASFSPDGKYYV 343 (353)
T ss_dssp SS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET-TE-E------EESSTTSSTTEE-------EEE-TTSSEEE
T ss_pred ceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC-CC-e------EeccCCCCCceE-------EEECCCCCEEE
Confidence 5554 23445555688999988754 5678888887 3 33 2 223211111 12 24567899999
Q ss_pred EEeecCCCCC
Q 044808 401 ICFYTMRMPF 410 (623)
Q Consensus 401 ~~~ss~~~P~ 410 (623)
.+++++.+|+
T Consensus 344 ~~~s~~~~P~ 353 (353)
T PF00930_consen 344 DTYSGPDTPP 353 (353)
T ss_dssp EEEESSSSCE
T ss_pred EEEcCCCCCC
Confidence 9999999985
No 43
>PLN02442 S-formylglutathione hydrolase
Probab=99.30 E-value=1.9e-11 Score=124.39 Aligned_cols=147 Identities=16% Similarity=0.171 Sum_probs=95.0
Q ss_pred eEeeeEEEC-CCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhh-HHHHHCCcEEEEEeccCCC---
Q 044808 440 VTESKRAYA-SDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASR-LTILDRGIIFAIAHVRGGD--- 514 (623)
Q Consensus 440 ~~~~~~~~s-~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~-~~~~~~G~~v~~~~~RG~~--- 514 (623)
..+.+++.| .=|..+++.+++|+. ..++++|+|++.||..+......+. ... ..+...|++|++||..+.|
T Consensus 17 ~~~~~~~~s~~l~~~~~~~vy~P~~--~~~~~~Pvv~~lHG~~~~~~~~~~~--~~~~~~~~~~g~~Vv~pd~~~~g~~~ 92 (283)
T PLN02442 17 FNRRYKHFSSTLGCSMTFSVYFPPA--SDSGKVPVLYWLSGLTCTDENFIQK--SGAQRAAAARGIALVAPDTSPRGLNV 92 (283)
T ss_pred EEEEEEEeccccCCceEEEEEcCCc--ccCCCCCEEEEecCCCcChHHHHHh--hhHHHHHhhcCeEEEecCCCCCCCCC
Confidence 345555555 367789999999984 3456899999999976554322222 223 3444569999999975433
Q ss_pred ---------cCChhHHHc-ccccCCCchHhH-HHH-HHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEE
Q 044808 515 ---------EKGKQWHEN-GKLLNKRNTFTD-FIA-CADYLIKS-NYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAV 581 (623)
Q Consensus 515 ---------~~G~~~~~~-~~~~~~~~~~~D-~~~-~~~~l~~~-~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v 581 (623)
++|..|+.. ....++...+.| +.+ ..+++.+. +.+|++|++|+|+|+||++++.++.++|++|++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~~ 172 (283)
T PLN02442 93 EGEADSWDFGVGAGFYLNATQEKWKNWRMYDYVVKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKNPDKYKSVS 172 (283)
T ss_pred CCCccccccCCCcceeeccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhCchhEEEEE
Confidence 122222211 111111111222 222 22333332 34799999999999999999999999999999999
Q ss_pred ecCCccchh
Q 044808 582 ADVPSVDVL 590 (623)
Q Consensus 582 ~~~~~~d~~ 590 (623)
+..|++|+.
T Consensus 173 ~~~~~~~~~ 181 (283)
T PLN02442 173 AFAPIANPI 181 (283)
T ss_pred EECCccCcc
Confidence 999998854
No 44
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=99.30 E-value=1.1e-11 Score=119.70 Aligned_cols=126 Identities=16% Similarity=0.180 Sum_probs=92.6
Q ss_pred EEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHC-CcEEEEEeccCC--CcCChhHHHcccccCCCch
Q 044808 456 ISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDR-GIIFAIAHVRGG--DEKGKQWHENGKLLNKRNT 532 (623)
Q Consensus 456 ~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~-G~~v~~~~~RG~--~~~G~~~~~~~~~~~~~~~ 532 (623)
..|+.|++. +.++.|+||..||.-+... .|.....+..++++ ||+|++|+--.. .....+|.. .....+..+
T Consensus 3 Y~lYvP~~~--~~~~~PLVv~LHG~~~~a~--~~~~~s~~~~lAd~~GfivvyP~~~~~~~~~~cw~w~~-~~~~~g~~d 77 (220)
T PF10503_consen 3 YRLYVPPGA--PRGPVPLVVVLHGCGQSAE--DFAAGSGWNALADREGFIVVYPEQSRRANPQGCWNWFS-DDQQRGGGD 77 (220)
T ss_pred EEEecCCCC--CCCCCCEEEEeCCCCCCHH--HHHhhcCHHHHhhcCCeEEEcccccccCCCCCcccccc-cccccCccc
Confidence 456667765 3457899999999855432 22211345678886 999999985332 222335554 333445567
Q ss_pred HhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCc
Q 044808 533 FTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPS 586 (623)
Q Consensus 533 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 586 (623)
...+.+.+++++++--+|++||.+.|.|+||.|+..++..+||+|+|+...+|+
T Consensus 78 ~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~~sG~ 131 (220)
T PF10503_consen 78 VAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAVVSGV 131 (220)
T ss_pred hhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEeeccc
Confidence 777778899999999999999999999999999999999999999998877665
No 45
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.29 E-value=1.4e-11 Score=119.91 Aligned_cols=129 Identities=18% Similarity=0.226 Sum_probs=103.5
Q ss_pred CCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHC-CcEEEEEeccCCCcCChhHHHccccc
Q 044808 449 SDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDR-GIIFAIAHVRGGDEKGKQWHENGKLL 527 (623)
Q Consensus 449 ~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~-G~~v~~~~~RG~~~~G~~~~~~~~~~ 527 (623)
.+|.+.+.+|+.|++. + .+.|+||+.||+-+......-. ..+-.++++ ||.|++| .++.++|...+...
T Consensus 42 ~~g~~r~y~l~vP~g~-~--~~apLvv~LHG~~~sgag~~~~--sg~d~lAd~~gFlV~yP-----dg~~~~wn~~~~~~ 111 (312)
T COG3509 42 VNGLKRSYRLYVPPGL-P--SGAPLVVVLHGSGGSGAGQLHG--TGWDALADREGFLVAYP-----DGYDRAWNANGCGN 111 (312)
T ss_pred cCCCccceEEEcCCCC-C--CCCCEEEEEecCCCChHHhhcc--cchhhhhcccCcEEECc-----CccccccCCCcccc
Confidence 3677889999999987 2 3449999999986654322112 233478886 9999999 56778887776666
Q ss_pred C--------CCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCcc
Q 044808 528 N--------KRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSV 587 (623)
Q Consensus 528 ~--------~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 587 (623)
+ +..++.++.+.++-|+.+--|||.||.|.|-|+||.|+.+++..+|++|.|+...++..
T Consensus 112 ~~~p~~~~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A~VAg~~ 179 (312)
T COG3509 112 WFGPADRRRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIAPVAGLL 179 (312)
T ss_pred cCCcccccCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccccceeeeeccc
Confidence 5 34578888899999999999999999999999999999999999999999988777765
No 46
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.27 E-value=8.9e-12 Score=137.54 Aligned_cols=129 Identities=19% Similarity=0.097 Sum_probs=91.8
Q ss_pred EEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHC-C-cEEEEEecc-CCCcCChhHHHcccccCCC
Q 044808 454 IPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDR-G-IIFAIAHVR-GGDEKGKQWHENGKLLNKR 530 (623)
Q Consensus 454 i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~-G-~~v~~~~~R-G~~~~G~~~~~~~~~~~~~ 530 (623)
+.+.|+.|... ...++.|+||++|||.......... ....|+.+ + ++|+.+||| |.-||...-.. ...+.
T Consensus 79 l~l~i~~p~~~-~~~~~~pv~v~ihGG~~~~g~~~~~---~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~---~~~~n 151 (493)
T cd00312 79 LYLNVYTPKNT-KPGNSLPVMVWIHGGGFMFGSGSLY---PGDGLAREGDNVIVVSINYRLGVLGFLSTGDI---ELPGN 151 (493)
T ss_pred CeEEEEeCCCC-CCCCCCCEEEEEcCCccccCCCCCC---ChHHHHhcCCCEEEEEecccccccccccCCCC---CCCcc
Confidence 34455667654 3356789999999995443332221 22345554 3 999999999 77666543211 22334
Q ss_pred chHhHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHh--CCCeeeEEEecCCccch
Q 044808 531 NTFTDFIACADYLIKS---NYCSEDNLCIEGGSAGGMLIGAVLNM--RPELFKVAVADVPSVDV 589 (623)
Q Consensus 531 ~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~~~d~ 589 (623)
..+.|+++|++|+.++ --.||+||.|+|+|+||+++.+.+.. .+.+|+++|++.|....
T Consensus 152 ~g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~~~~~~lf~~~i~~sg~~~~ 215 (493)
T cd00312 152 YGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLSPDSKGLFHRAISQSGSALS 215 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhCcchhHHHHHHhhhcCCccC
Confidence 4689999999999875 12799999999999999999988876 34589999999887654
No 47
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.22 E-value=6.3e-11 Score=116.71 Aligned_cols=136 Identities=20% Similarity=0.227 Sum_probs=105.6
Q ss_pred eeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcC----C
Q 044808 442 ESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEK----G 517 (623)
Q Consensus 442 ~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~----G 517 (623)
+.+.+++.| .++++++.+|++. ++.|+||.+|+-+|... ... .....|+.+||+|+.||.=+..+. +
T Consensus 3 ~~v~~~~~~-~~~~~~~a~P~~~----~~~P~VIv~hei~Gl~~--~i~--~~a~rlA~~Gy~v~~Pdl~~~~~~~~~~~ 73 (236)
T COG0412 3 TDVTIPAPD-GELPAYLARPAGA----GGFPGVIVLHEIFGLNP--HIR--DVARRLAKAGYVVLAPDLYGRQGDPTDIE 73 (236)
T ss_pred cceEeeCCC-ceEeEEEecCCcC----CCCCEEEEEecccCCch--HHH--HHHHHHHhCCcEEEechhhccCCCCCccc
Confidence 457788877 7899999999864 34499999999887663 334 556789999999999997663322 1
Q ss_pred --hhHHHcc--cccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCcc
Q 044808 518 --KQWHENG--KLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSV 587 (623)
Q Consensus 518 --~~~~~~~--~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 587 (623)
......+ .+........|+.++++||.+++.++++||+++|.|+||.+++.++++.| .++|+|+..|..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~-~v~a~v~fyg~~ 146 (236)
T COG0412 74 DEPAELETGLVERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP-EVKAAVAFYGGL 146 (236)
T ss_pred ccHHHHhhhhhccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC-CccEEEEecCCC
Confidence 2222221 01111578899999999999999999999999999999999999998876 689999988754
No 48
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=99.19 E-value=9.8e-11 Score=121.26 Aligned_cols=131 Identities=19% Similarity=0.209 Sum_probs=99.9
Q ss_pred ECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCC-CCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHccc
Q 044808 447 YASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSS-YSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGK 525 (623)
Q Consensus 447 ~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~-~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~ 525 (623)
...++..|++.++.| +. ...++.|+|||+|||....... ... ......+...|++|+.+|||-..+.
T Consensus 57 ~~~~~~~~~~~~y~p-~~-~~~~~~p~vly~HGGg~~~g~~~~~~-~~~~~~~~~~g~~vv~vdYrlaPe~--------- 124 (312)
T COG0657 57 AGPSGDGVPVRVYRP-DR-KAAATAPVVLYLHGGGWVLGSLRTHD-ALVARLAAAAGAVVVSVDYRLAPEH--------- 124 (312)
T ss_pred cCCCCCceeEEEECC-CC-CCCCCCcEEEEEeCCeeeecChhhhH-HHHHHHHHHcCCEEEecCCCCCCCC---------
Confidence 455677788888887 32 3456789999999995444332 332 1334455567999999999988764
Q ss_pred ccCCCchHhHHHHHHHHHHHcC---CCCCCcEEEEEeChHHHHHHHHHHhCCC----eeeEEEecCCccchhh
Q 044808 526 LLNKRNTFTDFIACADYLIKSN---YCSEDNLCIEGGSAGGMLIGAVLNMRPE----LFKVAVADVPSVDVLT 591 (623)
Q Consensus 526 ~~~~~~~~~D~~~~~~~l~~~~---~~d~~ri~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~~~~d~~~ 591 (623)
.-...++|+.+++.|+.++. -+||+||+++|.|+||.|+++++.+..+ .-++.+...|.+|...
T Consensus 125 --~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~ 195 (312)
T COG0657 125 --PFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS 195 (312)
T ss_pred --CCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc
Confidence 34678999999999999875 3899999999999999999887755332 4588899999999764
No 49
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.16 E-value=2.1e-08 Score=108.22 Aligned_cols=237 Identities=14% Similarity=0.039 Sum_probs=146.2
Q ss_pred CCCCCEEEEEEeCc-----eEEEEECCCCCccccccCc--cceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCcccEE
Q 044808 158 SPNNKLVAFRENCG-----TVCVIDSETGAPAEKPIQG--CLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQSKDTC 229 (623)
Q Consensus 158 SPDG~~lA~~~~~~-----~l~v~dl~tg~~~~~~i~~--~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~~d~l 229 (623)
.+.+.+++|....+ .|+++|..++......-.+ +..+.|+||| .++|+.... ..++||++++.++.. ..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~-~~~~i~v~d~~~g~~--~~ 228 (417)
T TIGR02800 152 GAFSTRIAYVSKSGKSRRYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFES-GKPEIYVQDLATGQR--EK 228 (417)
T ss_pred CCcCCEEEEEEEeCCCCcceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCC-CCcEEEEEECCCCCE--EE
Confidence 45577889987652 7999999766543211112 2358999999 788887543 234899999987632 22
Q ss_pred EEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccc-eeEEEEeeCCEEEE-EeCCCCCCeE
Q 044808 230 LYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLG-IDMFVSHRGNQFFI-RRSDGGFHSD 307 (623)
Q Consensus 230 v~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~-~~~~~~~dg~~ly~-sn~~g~~~~~ 307 (623)
+... ......+.|||||+.|++.....+..+||++++.++. .+.+...... ....|+++|++|++ +++.+ ..+
T Consensus 229 ~~~~--~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g--~~~ 303 (417)
T TIGR02800 229 VASF--PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGG--SPQ 303 (417)
T ss_pred eecC--CCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC-EEECCCCCCCCCCEEECCCCCEEEEEECCCC--Cce
Confidence 3221 1223346899999999887655556789999998876 5555433221 13468899999999 87653 358
Q ss_pred EEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCCCcccccCCceeecCCCceEEEeee
Q 044808 308 VLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCISRIH 387 (623)
Q Consensus 308 L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~~~~~~ 387 (623)
|+.+++.++... .+........-..++..++.|++.....+..+|+++++.+ +. . +.+ ++.. ..
T Consensus 304 iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~-~~-~------~~l--~~~~-~~---- 367 (417)
T TIGR02800 304 IYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG-GG-E------RVL--TDTG-LD---- 367 (417)
T ss_pred EEEEECCCCCEE-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC-CC-e------EEc--cCCC-CC----
Confidence 999998765432 2332322211113444567888888777777899999874 32 1 111 1111 11
Q ss_pred ccccCCcCCceEEEEeecCCCCCeEEEEECCC
Q 044808 388 GIRDSQFSSSILRICFYTMRMPFSAYDYDMNT 419 (623)
Q Consensus 388 ~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~ 419 (623)
....+++++..+++....... ..++.++...
T Consensus 368 ~~p~~spdg~~l~~~~~~~~~-~~l~~~~~~g 398 (417)
T TIGR02800 368 ESPSFAPNGRMILYATTRGGR-GVLGLVSTDG 398 (417)
T ss_pred CCceECCCCCEEEEEEeCCCc-EEEEEEECCC
Confidence 122446678888777665433 4667666543
No 50
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.11 E-value=7.3e-10 Score=116.63 Aligned_cols=140 Identities=16% Similarity=0.062 Sum_probs=97.5
Q ss_pred ceEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCCh
Q 044808 439 YVTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGK 518 (623)
Q Consensus 439 ~~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~ 518 (623)
+..++.+....||.+|.+....|++. .+.|+||++||..+ .....|. .....|+++||.|+.+|+||-|....
T Consensus 59 ~~~~~~~~~~~~g~~l~~~~~~p~~~----~~~~~iv~lHG~~~-~~~~~~~--~~~~~l~~~g~~v~~~D~~G~G~S~~ 131 (349)
T PLN02385 59 IKTEESYEVNSRGVEIFSKSWLPENS----RPKAAVCFCHGYGD-TCTFFFE--GIARKIASSGYGVFAMDYPGFGLSEG 131 (349)
T ss_pred cceeeeeEEcCCCCEEEEEEEecCCC----CCCeEEEEECCCCC-ccchHHH--HHHHHHHhCCCEEEEecCCCCCCCCC
Confidence 33455556678999999887777542 35689999999533 2221234 45567888999999999999765421
Q ss_pred hHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccc
Q 044808 519 QWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVD 588 (623)
Q Consensus 519 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 588 (623)
. .+....-....+|+++.++++..+.-.++.++.++|+|+||.+++.++.++|++++++|...|+..
T Consensus 132 ~---~~~~~~~~~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glVLi~p~~~ 198 (349)
T PLN02385 132 L---HGYIPSFDDLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAILVAPMCK 198 (349)
T ss_pred C---CCCcCCHHHHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhheeEeccccc
Confidence 1 000001122356667777777655445567899999999999999999999999999999888654
No 51
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=2.8e-08 Score=107.56 Aligned_cols=184 Identities=13% Similarity=0.055 Sum_probs=119.8
Q ss_pred CCEEEEEEeCc------eEEEEECCCCCcccccc-C-ccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCcccEEEE
Q 044808 161 NKLVAFRENCG------TVCVIDSETGAPAEKPI-Q-GCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQSKDTCLY 231 (623)
Q Consensus 161 G~~lA~~~~~~------~l~v~dl~tg~~~~~~i-~-~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~ 231 (623)
+++|||..... +|+++|..++......- . .+..+.||||| +++|+..+. .+++||++++.++.. ..+.
T Consensus 168 ~~ria~v~~~~~~~~~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~-~~~~i~i~dl~tg~~--~~l~ 244 (429)
T PRK01742 168 RTRIAYVVQKNGGSQPYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFEN-KKSQLVVHDLRSGAR--KVVA 244 (429)
T ss_pred CCEEEEEEEEcCCCceEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecC-CCcEEEEEeCCCCce--EEEe
Confidence 57899986542 89999998765432111 1 23359999999 898887643 345899999987642 2332
Q ss_pred eecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccc-eeEEEEeeCCEEEE-EeCCCCCCeEEE
Q 044808 232 RTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLG-IDMFVSHRGNQFFI-RRSDGGFHSDVL 309 (623)
Q Consensus 232 ~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~-~~~~~~~dg~~ly~-sn~~g~~~~~L~ 309 (623)
... .....+.|||||++|++.....+..+||++|+.++. .+.++..... ....|++||+.|++ ++.++ ..+|+
T Consensus 245 ~~~--g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g--~~~I~ 319 (429)
T PRK01742 245 SFR--GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSG--SPQVY 319 (429)
T ss_pred cCC--CccCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCC--CceEE
Confidence 211 123357899999999987655555689999998775 5555543322 23568999999999 87653 46899
Q ss_pred EEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCC
Q 044808 310 TCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPP 360 (623)
Q Consensus 310 ~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~ 360 (623)
.++..+... + ++.+.. .. ..++++++.|++... ..+.++++.+
T Consensus 320 ~~~~~~~~~-~-~l~~~~-~~-~~~SpDG~~ia~~~~----~~i~~~Dl~~ 362 (429)
T PRK01742 320 RMSASGGGA-S-LVGGRG-YS-AQISADGKTLVMING----DNVVKQDLTS 362 (429)
T ss_pred EEECCCCCe-E-EecCCC-CC-ccCCCCCCEEEEEcC----CCEEEEECCC
Confidence 998765432 2 233221 11 235566777777654 3477788875
No 52
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=99.08 E-value=8.3e-10 Score=113.01 Aligned_cols=136 Identities=14% Similarity=0.132 Sum_probs=103.2
Q ss_pred EeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCC---CCCCCCCCCchhhhHHHHHC-CcEEEEEeccCCCcC
Q 044808 441 TESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSY---GLGPSSYSNSIASRLTILDR-GIIFAIAHVRGGDEK 516 (623)
Q Consensus 441 ~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~---~~~~~~~~~~~~~~~~~~~~-G~~v~~~~~RG~~~~ 516 (623)
...+.+. ..+.|++.|+.|... ....+.|+|||+|||- ++...+.|+ .....++.+ +.+|+.+|||=..|.
T Consensus 63 ~~dv~~~--~~~~l~vRly~P~~~-~~~~~~p~lvyfHGGGf~~~S~~~~~y~--~~~~~~a~~~~~vvvSVdYRLAPEh 137 (336)
T KOG1515|consen 63 SKDVTID--PFTNLPVRLYRPTSS-SSETKLPVLVYFHGGGFCLGSANSPAYD--SFCTRLAAELNCVVVSVDYRLAPEH 137 (336)
T ss_pred eeeeEec--CCCCeEEEEEcCCCC-CcccCceEEEEEeCCccEeCCCCCchhH--HHHHHHHHHcCeEEEecCcccCCCC
Confidence 4555544 445688897777765 3337899999999993 333344555 555666564 999999999977663
Q ss_pred ChhHHHcccccCCCchHhHHHHHHHHHHHc----CCCCCCcEEEEEeChHHHHHHHHHHhC------CCeeeEEEecCCc
Q 044808 517 GKQWHENGKLLNKRNTFTDFIACADYLIKS----NYCSEDNLCIEGGSAGGMLIGAVLNMR------PELFKVAVADVPS 586 (623)
Q Consensus 517 G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~----~~~d~~ri~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~~~ 586 (623)
.-+..++|..+|+.|+.++ -.+|++||+|+|-|+||.++..++.+. +-..++.|...|+
T Consensus 138 -----------~~Pa~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~ 206 (336)
T KOG1515|consen 138 -----------PFPAAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPF 206 (336)
T ss_pred -----------CCCccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecc
Confidence 4578999999999999987 458999999999999999998776542 2356999999999
Q ss_pred cchhhh
Q 044808 587 VDVLTT 592 (623)
Q Consensus 587 ~d~~~~ 592 (623)
......
T Consensus 207 ~~~~~~ 212 (336)
T KOG1515|consen 207 FQGTDR 212 (336)
T ss_pred cCCCCC
Confidence 887643
No 53
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.08 E-value=4.3e-10 Score=116.55 Aligned_cols=139 Identities=19% Similarity=0.219 Sum_probs=91.5
Q ss_pred CceEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCC
Q 044808 438 NYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKG 517 (623)
Q Consensus 438 ~~~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G 517 (623)
.+..+++.++-. |.+|++++..|+. +++.|+||.. ||..+-....+. .....|+.+|++++.+|.=|-|.--
T Consensus 162 ~~~i~~v~iP~e-g~~I~g~LhlP~~----~~p~P~VIv~-gGlDs~qeD~~~--l~~~~l~~rGiA~LtvDmPG~G~s~ 233 (411)
T PF06500_consen 162 DYPIEEVEIPFE-GKTIPGYLHLPSG----EKPYPTVIVC-GGLDSLQEDLYR--LFRDYLAPRGIAMLTVDMPGQGESP 233 (411)
T ss_dssp SSEEEEEEEEET-TCEEEEEEEESSS----SS-EEEEEEE---TTS-GGGGHH--HHHCCCHHCT-EEEEE--TTSGGGT
T ss_pred CCCcEEEEEeeC-CcEEEEEEEcCCC----CCCCCEEEEe-CCcchhHHHHHH--HHHHHHHhCCCEEEEEccCCCcccc
Confidence 556788888864 5899999887763 4789998864 544332222222 2223578899999999999987632
Q ss_pred hhHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCcc-chhh
Q 044808 518 KQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSV-DVLT 591 (623)
Q Consensus 518 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~-d~~~ 591 (623)
.|- ..+..-.=.-++++||.+.+++|.+||+++|-|+|||.+..++..++++++|+|+..|++ ++++
T Consensus 234 -~~~------l~~D~~~l~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~~Ga~vh~~ft 301 (411)
T PF06500_consen 234 -KWP------LTQDSSRLHQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVALGAPVHHFFT 301 (411)
T ss_dssp -TT-------S-S-CCHHHHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEEES---SCGGH
T ss_pred -cCC------CCcCHHHHHHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEeeeCchHhhhhc
Confidence 221 111111223478999999999999999999999999999988876778899998888754 5543
No 54
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.07 E-value=1.7e-09 Score=108.10 Aligned_cols=133 Identities=12% Similarity=-0.035 Sum_probs=94.6
Q ss_pred eeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCC---CCCCchhhhHHHHHCCcEEEEEeccCCCcCChh
Q 044808 443 SKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPS---SYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQ 519 (623)
Q Consensus 443 ~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~---~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~ 519 (623)
.+++++..|. +.+++..|.+ .++.|+||++||- +.... ..|. .....|+++||.|+.+|+||.|.....
T Consensus 2 ~~~l~~~~g~-~~~~~~~p~~----~~~~~~VlllHG~-g~~~~~~~~~~~--~la~~La~~Gy~Vl~~Dl~G~G~S~g~ 73 (266)
T TIGR03101 2 PFFLDAPHGF-RFCLYHPPVA----VGPRGVVIYLPPF-AEEMNKSRRMVA--LQARAFAAGGFGVLQIDLYGCGDSAGD 73 (266)
T ss_pred CEEecCCCCc-EEEEEecCCC----CCCceEEEEECCC-cccccchhHHHH--HHHHHHHHCCCEEEEECCCCCCCCCCc
Confidence 4677888886 4455344433 2357999999984 33222 1223 345678889999999999997654222
Q ss_pred HHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchh
Q 044808 520 WHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVL 590 (623)
Q Consensus 520 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~ 590 (623)
... ..-....+|+.++++||.+++ .++|.++|+|.||.+++.++.++|+.+++.|...|+++..
T Consensus 74 ~~~----~~~~~~~~Dv~~ai~~L~~~~---~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lVL~~P~~~g~ 137 (266)
T TIGR03101 74 FAA----ARWDVWKEDVAAAYRWLIEQG---HPPVTLWGLRLGALLALDAANPLAAKCNRLVLWQPVVSGK 137 (266)
T ss_pred ccc----CCHHHHHHHHHHHHHHHHhcC---CCCEEEEEECHHHHHHHHHHHhCccccceEEEeccccchH
Confidence 111 011134589999999998875 4689999999999999988889999999999999988754
No 55
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.04 E-value=5.7e-09 Score=111.14 Aligned_cols=199 Identities=14% Similarity=0.099 Sum_probs=134.6
Q ss_pred EEeeeEECCCCCEEEEEEeCc----eEEEEECCCCCcccc-ccCccce-eEEecCC-eEEEEEeCCCCCCeEEEEECCCC
Q 044808 151 RITAFKVSPNNKLVAFRENCG----TVCVIDSETGAPAEK-PIQGCLE-FEWAGDE-AFLYTRRNAIAEPQVWFHKLGEE 223 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~----~l~v~dl~tg~~~~~-~i~~~~~-~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~ 223 (623)
.+-.+.|||||+.++|..-.. .++++|+++|+.... ...+... +.|+||| +++|..... +.++||..++.+.
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rd-g~~~iy~~dl~~~ 272 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRD-GSPDIYLMDLDGK 272 (425)
T ss_pred ceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCC-CCccEEEEcCCCC
Confidence 345689999999999995443 699999999975431 2333334 9999999 888887543 4459999999887
Q ss_pred CcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccce-eEEEEeeCCEEEE-EeCC
Q 044808 224 QSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGI-DMFVSHRGNQFFI-RRSD 301 (623)
Q Consensus 224 ~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~-~~~~~~dg~~ly~-sn~~ 301 (623)
+. .. +.+ ........+|||||++|+|.+...+...||++++++.. .+.++....+- ...+++||+.+.| +-.+
T Consensus 273 ~~-~~-Lt~--~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~-~~riT~~~~~~~~p~~SpdG~~i~~~~~~~ 347 (425)
T COG0823 273 NL-PR-LTN--GFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQ-VTRLTFSGGGNSNPVWSPDGDKIVFESSSG 347 (425)
T ss_pred cc-ee-ccc--CCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCc-eeEeeccCCCCcCccCCCCCCEEEEEeccC
Confidence 52 22 221 12234467899999999999888788899999999886 55555443332 2258999999999 6333
Q ss_pred CCCCeEEEEEeCCCCCceee-EEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECC
Q 044808 302 GGFHSDVLTCPVDNTFETTV-LIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 302 g~~~~~L~~~d~~~~~~~~~-li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
. ...+...++.+... | ++.......-..+...+..+++.....+.+.+.....+
T Consensus 348 -g-~~~i~~~~~~~~~~--~~~lt~~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~ 402 (425)
T COG0823 348 -G-QWDIDKNDLASGGK--IRILTSTYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLD 402 (425)
T ss_pred -C-ceeeEEeccCCCCc--EEEccccccCCCCCcCCCCceEEEeccCCCCceEEEeecc
Confidence 2 36788888766542 3 33322211112344455677777777777777777666
No 56
>PLN00021 chlorophyllase
Probab=99.04 E-value=3.1e-09 Score=109.13 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=90.8
Q ss_pred CeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCc
Q 044808 452 EEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRN 531 (623)
Q Consensus 452 ~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~ 531 (623)
..+|+.|++|.. .+++|+||++||..+.. ..|. .....|+++||+|+.+|.+|-++- ....
T Consensus 37 ~~~p~~v~~P~~----~g~~PvVv~lHG~~~~~--~~y~--~l~~~Las~G~~VvapD~~g~~~~-----------~~~~ 97 (313)
T PLN00021 37 PPKPLLVATPSE----AGTYPVLLFLHGYLLYN--SFYS--QLLQHIASHGFIVVAPQLYTLAGP-----------DGTD 97 (313)
T ss_pred CCceEEEEeCCC----CCCCCEEEEECCCCCCc--ccHH--HHHHHHHhCCCEEEEecCCCcCCC-----------Cchh
Confidence 568999888864 36799999999975432 2344 556678889999999999873211 1234
Q ss_pred hHhHHHHHHHHHHHc--------CCCCCCcEEEEEeChHHHHHHHHHHhCCC-----eeeEEEecCCccch
Q 044808 532 TFTDFIACADYLIKS--------NYCSEDNLCIEGGSAGGMLIGAVLNMRPE-----LFKVAVADVPSVDV 589 (623)
Q Consensus 532 ~~~D~~~~~~~l~~~--------~~~d~~ri~i~G~S~GG~l~~~~~~~~p~-----~f~a~v~~~~~~d~ 589 (623)
.++|..++++|+.+. ..+|++|++++|+|+||+++..++..+|+ .|+++|...|+..+
T Consensus 98 ~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~ 168 (313)
T PLN00021 98 EIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGT 168 (313)
T ss_pred hHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccc
Confidence 567788888888752 24788999999999999999999988875 58899988887654
No 57
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.01 E-value=8.5e-10 Score=107.99 Aligned_cols=123 Identities=15% Similarity=0.130 Sum_probs=88.0
Q ss_pred EEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCc-CChh------HHHcccc
Q 044808 454 IPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDE-KGKQ------WHENGKL 526 (623)
Q Consensus 454 i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~-~G~~------~~~~~~~ 526 (623)
|.+++..|++. ++.|.||.+|+-+|.. +... .....|+++||.|++||+-++.+ .-.. .......
T Consensus 1 ~~ay~~~P~~~----~~~~~Vvv~~d~~G~~--~~~~--~~ad~lA~~Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~ 72 (218)
T PF01738_consen 1 IDAYVARPEGG----GPRPAVVVIHDIFGLN--PNIR--DLADRLAEEGYVVLAPDLFGGRGAPPSDPEEAFAAMRELFA 72 (218)
T ss_dssp EEEEEEEETTS----SSEEEEEEE-BTTBS---HHHH--HHHHHHHHTT-EEEEE-CCCCTS--CCCHHCHHHHHHHCHH
T ss_pred CeEEEEeCCCC----CCCCEEEEEcCCCCCc--hHHH--HHHHHHHhcCCCEEecccccCCCCCccchhhHHHHHHHHHh
Confidence 56788888753 6899999999988766 2222 34578899999999999876655 1111 1110001
Q ss_pred cCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCC
Q 044808 527 LNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVP 585 (623)
Q Consensus 527 ~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 585 (623)
........|+.++++||.+++-++++||+++|.|+||.++..++.+. +.++|+|+..|
T Consensus 73 ~~~~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~-~~~~a~v~~yg 130 (218)
T PF01738_consen 73 PRPEQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARD-PRVDAAVSFYG 130 (218)
T ss_dssp HSHHHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCT-TTSSEEEEES-
T ss_pred hhHHHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhc-cccceEEEEcC
Confidence 11234668899999999999989999999999999999999887765 67899999999
No 58
>PRK10985 putative hydrolase; Provisional
Probab=98.99 E-value=4.4e-09 Score=109.46 Aligned_cols=137 Identities=18% Similarity=0.168 Sum_probs=92.2
Q ss_pred eeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHH
Q 044808 443 SKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHE 522 (623)
Q Consensus 443 ~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~ 522 (623)
+..+++.||..|.......+. ...+.|+||++||..+........ .....|.++||.|+.+|+||.|+......+
T Consensus 33 ~~~~~~~dg~~~~l~w~~~~~---~~~~~p~vll~HG~~g~~~~~~~~--~~~~~l~~~G~~v~~~d~rG~g~~~~~~~~ 107 (324)
T PRK10985 33 WQRLELPDGDFVDLAWSEDPA---QARHKPRLVLFHGLEGSFNSPYAH--GLLEAAQKRGWLGVVMHFRGCSGEPNRLHR 107 (324)
T ss_pred eeEEECCCCCEEEEecCCCCc---cCCCCCEEEEeCCCCCCCcCHHHH--HHHHHHHHCCCEEEEEeCCCCCCCccCCcc
Confidence 344667899877654222111 123569999999976544322222 345678889999999999997654321111
Q ss_pred cccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCe--eeEEEecCCccchh
Q 044808 523 NGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPEL--FKVAVADVPSVDVL 590 (623)
Q Consensus 523 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~--f~a~v~~~~~~d~~ 590 (623)
........|+.++++++.++- ...++.++|+|.||.+++..+.++++. ++++|+..+..|+.
T Consensus 108 ----~~~~~~~~D~~~~i~~l~~~~--~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i~~p~~~~ 171 (324)
T PRK10985 108 ----IYHSGETEDARFFLRWLQREF--GHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIVSAPLMLE 171 (324)
T ss_pred ----eECCCchHHHHHHHHHHHHhC--CCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEEcCCCCHH
Confidence 111235799999999998753 236899999999999888777776543 78888888877754
No 59
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.98 E-value=6.5e-08 Score=103.10 Aligned_cols=180 Identities=14% Similarity=0.085 Sum_probs=122.4
Q ss_pred eEEEEECCCCCccccccCcc---ceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCcccEEEEeecCCceeEEEEEcCC
Q 044808 172 TVCVIDSETGAPAEKPIQGC---LEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQSKDTCLYRTREDLFDLTLEASES 247 (623)
Q Consensus 172 ~l~v~dl~tg~~~~~~i~~~---~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~D 247 (623)
+|++.|-. |.......... ....|+||+ +++|........+++|++++.++.....+-+. .....+.||||
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~----g~~~~P~fspD 248 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFN----GNNGAPAFSPD 248 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccC----CccCCccCCCC
Confidence 88888876 54433211211 248999999 88888765543368999999988643222222 12334678999
Q ss_pred CcEEEEEeecceeeEEEEEECCCCCceeecCCCc-cceeEEEEeeCCEEEE-EeCCCCCCeEEEEEeCCCCCceeeEEcC
Q 044808 248 KKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWH-LGIDMFVSHRGNQFFI-RRSDGGFHSDVLTCPVDNTFETTVLIPH 325 (623)
Q Consensus 248 g~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~-~~~~~~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~~~~~li~~ 325 (623)
|++|++.....+..+||++|+.++. ...++... ......|+|||+.++| |++.|.+ +|++++++.....+ +...
T Consensus 249 G~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p--~I~~~~~~g~~~~r-iT~~ 324 (425)
T COG0823 249 GSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRP--QIYLYDLEGSQVTR-LTFS 324 (425)
T ss_pred CCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCCCCCc--ceEEECCCCCceeE-eecc
Confidence 9999998877788999999999876 43343221 1224579999999999 9988655 79999988765433 3333
Q ss_pred CCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCC
Q 044808 326 RERVRVEEVRLFADHIAVYELEEGLPKITTYCLPP 360 (623)
Q Consensus 326 ~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~ 360 (623)
........++++++++++....+|...+.++++..
T Consensus 325 ~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 325 GGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred CCCCcCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 22223456777889999988766666677777664
No 60
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=98.97 E-value=9.2e-10 Score=107.05 Aligned_cols=104 Identities=19% Similarity=0.146 Sum_probs=77.2
Q ss_pred EEEEcCCCCCCCCCCCCchhhhHHHHH-CCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHc---CCC
Q 044808 474 LLFGYGSYGLGPSSYSNSIASRLTILD-RGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKS---NYC 549 (623)
Q Consensus 474 il~~~Gg~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~---~~~ 549 (623)
|||+|||.......... ......|++ +|++|+.+|||=+.+ ..-...++|+.++++|+.++ --.
T Consensus 1 v~~~HGGg~~~g~~~~~-~~~~~~la~~~g~~v~~~~Yrl~p~-----------~~~p~~~~D~~~a~~~l~~~~~~~~~ 68 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESH-WPFAARLAAERGFVVVSIDYRLAPE-----------APFPAALEDVKAAYRWLLKNADKLGI 68 (211)
T ss_dssp EEEE--STTTSCGTTTH-HHHHHHHHHHHTSEEEEEE---TTT-----------SSTTHHHHHHHHHHHHHHHTHHHHTE
T ss_pred CEEECCcccccCChHHH-HHHHHHHHhhccEEEEEeecccccc-----------ccccccccccccceeeeccccccccc
Confidence 78999996554433332 144566776 899999999996654 23468899999999999997 248
Q ss_pred CCCcEEEEEeChHHHHHHHHHHhCCC----eeeEEEecCCccch
Q 044808 550 SEDNLCIEGGSAGGMLIGAVLNMRPE----LFKVAVADVPSVDV 589 (623)
Q Consensus 550 d~~ri~i~G~S~GG~l~~~~~~~~p~----~f~a~v~~~~~~d~ 589 (623)
|++||+++|.|+||.|++.++.+..+ ..+++++..|++|+
T Consensus 69 d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~ 112 (211)
T PF07859_consen 69 DPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDL 112 (211)
T ss_dssp EEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSST
T ss_pred cccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccc
Confidence 89999999999999999888765322 47999999999988
No 61
>PHA02857 monoglyceride lipase; Provisional
Probab=98.95 E-value=6.3e-09 Score=105.63 Aligned_cols=129 Identities=14% Similarity=0.087 Sum_probs=93.3
Q ss_pred EECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHccc
Q 044808 446 AYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGK 525 (623)
Q Consensus 446 ~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~ 525 (623)
+.++||..+++.+..|.+ .+.|+|+++||.... ...|. .....|.++||.|+.+|.||.|..... . ..
T Consensus 5 ~~~~~g~~l~~~~~~~~~-----~~~~~v~llHG~~~~--~~~~~--~~~~~l~~~g~~via~D~~G~G~S~~~--~-~~ 72 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPIT-----YPKALVFISHGAGEH--SGRYE--ELAENISSLGILVFSHDHIGHGRSNGE--K-MM 72 (276)
T ss_pred eecCCCCEEEEEeccCCC-----CCCEEEEEeCCCccc--cchHH--HHHHHHHhCCCEEEEccCCCCCCCCCc--c-CC
Confidence 446799999998665532 345899999996432 23555 667788889999999999997753211 0 00
Q ss_pred ccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccc
Q 044808 526 LLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVD 588 (623)
Q Consensus 526 ~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 588 (623)
-..-...++|+++.++++.+. ....++.++|+|.||.+++.++.++|++++++|...|+.+
T Consensus 73 ~~~~~~~~~d~~~~l~~~~~~--~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil~~p~~~ 133 (276)
T PHA02857 73 IDDFGVYVRDVVQHVVTIKST--YPGVPVFLLGHSMGATISILAAYKNPNLFTAMILMSPLVN 133 (276)
T ss_pred cCCHHHHHHHHHHHHHHHHhh--CCCCCEEEEEcCchHHHHHHHHHhCccccceEEEeccccc
Confidence 011113467777777777654 1236899999999999999999899999999999999765
No 62
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.92 E-value=5.5e-09 Score=102.21 Aligned_cols=115 Identities=19% Similarity=0.222 Sum_probs=88.3
Q ss_pred EEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchH
Q 044808 454 IPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTF 533 (623)
Q Consensus 454 i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~ 533 (623)
.|..|.+|.+. +.||++|+.|| +... ...|+ .....+++.||+|+.++...-.+ .....+.
T Consensus 4 ~~l~v~~P~~~----g~yPVv~f~~G-~~~~-~s~Ys--~ll~hvAShGyIVV~~d~~~~~~-----------~~~~~~~ 64 (259)
T PF12740_consen 4 KPLLVYYPSSA----GTYPVVLFLHG-FLLI-NSWYS--QLLEHVASHGYIVVAPDLYSIGG-----------PDDTDEV 64 (259)
T ss_pred CCeEEEecCCC----CCcCEEEEeCC-cCCC-HHHHH--HHHHHHHhCceEEEEecccccCC-----------CCcchhH
Confidence 45677888764 78999999998 4422 22355 66788999999999999554211 2334678
Q ss_pred hHHHHHHHHHHHc--C------CCCCCcEEEEEeChHHHHHHHHHHhC-----CCeeeEEEecCCcc
Q 044808 534 TDFIACADYLIKS--N------YCSEDNLCIEGGSAGGMLIGAVLNMR-----PELFKVAVADVPSV 587 (623)
Q Consensus 534 ~D~~~~~~~l~~~--~------~~d~~ri~i~G~S~GG~l~~~~~~~~-----p~~f~a~v~~~~~~ 587 (623)
+++.+.++||.+. . -+|-+||+|+|+|.||-++..++.++ +..|+|+|..-||-
T Consensus 65 ~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVd 131 (259)
T PF12740_consen 65 ASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVD 131 (259)
T ss_pred HHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEecccc
Confidence 8999999998871 1 15888999999999999998887776 55899999999986
No 63
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.86 E-value=3.1e-07 Score=96.71 Aligned_cols=193 Identities=11% Similarity=0.055 Sum_probs=124.1
Q ss_pred eeeEECCCCCEEEEEEeCc------------------------------------eEEEEECCCCCccccccC-----c-
Q 044808 153 TAFKVSPNNKLVAFRENCG------------------------------------TVCVIDSETGAPAEKPIQ-----G- 190 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~~------------------------------------~l~v~dl~tg~~~~~~i~-----~- 190 (623)
..+.|||||++|||..-.. .|+|+|+++|+.....++ .
T Consensus 104 ~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~ 183 (353)
T PF00930_consen 104 SAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQD 183 (353)
T ss_dssp BSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSS
T ss_pred cceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCc
Confidence 4679999999999984211 688899988876432222 1
Q ss_pred -c-ceeEEecCC-eEEEEEeCCCCCC-eEEEEECCCCCcccEEEEeecCCcee---EEEEEc-CCCcEEEEEeecceeeE
Q 044808 191 -C-LEFEWAGDE-AFLYTRRNAIAEP-QVWFHKLGEEQSKDTCLYRTREDLFD---LTLEAS-ESKKFLFVKSKTKVTGF 262 (623)
Q Consensus 191 -~-~~~~WspDg-~l~y~~~d~~~~~-~v~~~~lgt~~~~d~lv~~~~~~~~~---~~~~~S-~Dg~~l~i~s~~~~~s~ 262 (623)
. ..+.|++|+ +|++...+..+.. .+...+..++.. .+++++..+.|. ..+.+. +++..+++.+...+..+
T Consensus 184 ~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~--~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~h 261 (353)
T PF00930_consen 184 YYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGET--RVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRH 261 (353)
T ss_dssp EEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTC--EEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEE
T ss_pred cCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCce--eEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcE
Confidence 1 139999999 5888877665555 788888877643 455565554442 133343 77776666666666799
Q ss_pred EEEEECCCCCceeecCCCccce--eEEEEeeCCEEEE-EeCCCCCCeEEEEEeCC-CCCceeeEEcCCCCceEeEEEEeC
Q 044808 263 VYYFDVSRPETLWFLPPWHLGI--DMFVSHRGNQFFI-RRSDGGFHSDVLTCPVD-NTFETTVLIPHRERVRVEEVRLFA 338 (623)
Q Consensus 263 l~~~dl~~~~~~~~l~~~~~~~--~~~~~~dg~~ly~-sn~~g~~~~~L~~~d~~-~~~~~~~li~~~~d~~i~~~~~~~ 338 (623)
||+++.+++. .+.|+...-.+ ...++++++.+|| ++.++....+||+++++ ++.. +.|........-..++..+
T Consensus 262 ly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~~~~~~~~~~Spdg 339 (353)
T PF00930_consen 262 LYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCEDGDHYSASFSPDG 339 (353)
T ss_dssp EEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTTSSTTEEEEE-TTS
T ss_pred EEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCCCCCceEEEECCCC
Confidence 9999999886 77787766554 2357888999999 88754557899999998 5433 2233333222122455556
Q ss_pred CEEEEEEeeCC
Q 044808 339 DHIAVYELEEG 349 (623)
Q Consensus 339 ~~Lv~~~~~~g 349 (623)
++++..+...+
T Consensus 340 ~y~v~~~s~~~ 350 (353)
T PF00930_consen 340 KYYVDTYSGPD 350 (353)
T ss_dssp SEEEEEEESSS
T ss_pred CEEEEEEcCCC
Confidence 77777765443
No 64
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=98.86 E-value=6.1e-09 Score=108.86 Aligned_cols=130 Identities=20% Similarity=0.251 Sum_probs=92.3
Q ss_pred CCCCCeEEEEEEEeCCCccCCCCccEEEEEcCC-C--CCCCCCCCCchhhhHHHHHCC-cEEEEEeccCCCcCC-hhHHH
Q 044808 448 ASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGS-Y--GLGPSSYSNSIASRLTILDRG-IIFAIAHVRGGDEKG-KQWHE 522 (623)
Q Consensus 448 s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg-~--~~~~~~~~~~~~~~~~~~~~G-~~v~~~~~RG~~~~G-~~~~~ 522 (623)
|.|...+- |..|. . ...+.|+|||+||| | |+...+.|+ -+.|+.+| +||+.+|||=|- +| -+|..
T Consensus 76 sEDCL~LN--IwaP~-~--~a~~~PVmV~IHGG~y~~Gs~s~~~yd----gs~La~~g~vVvVSvNYRLG~-lGfL~~~~ 145 (491)
T COG2272 76 SEDCLYLN--IWAPE-V--PAEKLPVMVYIHGGGYIMGSGSEPLYD----GSALAARGDVVVVSVNYRLGA-LGFLDLSS 145 (491)
T ss_pred cccceeEE--eeccC-C--CCCCCcEEEEEeccccccCCCcccccC----hHHHHhcCCEEEEEeCccccc-ceeeehhh
Confidence 55665555 44665 3 23568999999999 3 233344444 56789998 999999999764 22 12222
Q ss_pred cc--cccCCCchHhHHHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCCC---eeeEEEecCCccc
Q 044808 523 NG--KLLNKRNTFTDFIACADYLIKS---NYCSEDNLCIEGGSAGGMLIGAVLNMRPE---LFKVAVADVPSVD 588 (623)
Q Consensus 523 ~~--~~~~~~~~~~D~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~~~~d 588 (623)
-. .......-+.|++.|++|+.++ =--||+.|.++|.|+|++.++.++.. |. +|+-+|++.|-.-
T Consensus 146 ~~~~~~~~~n~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 146 LDTEDAFASNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAAS 218 (491)
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCC
Confidence 22 2222235789999999999874 23699999999999999999988864 65 8999888887654
No 65
>PLN02872 triacylglycerol lipase
Probab=98.84 E-value=4.3e-09 Score=111.47 Aligned_cols=149 Identities=19% Similarity=0.238 Sum_probs=98.5
Q ss_pred CCCceEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCc--hhhhHHHHHCCcEEEEEeccCC
Q 044808 436 ESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNS--IASRLTILDRGIIFAIAHVRGG 513 (623)
Q Consensus 436 ~~~~~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~--~~~~~~~~~~G~~v~~~~~RG~ 513 (623)
...|.+|+..+++.||..+.+.-+.++.......+.|.||+.||....+....... ......|+++||.|..+|.||.
T Consensus 39 ~~gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~GydV~l~n~RG~ 118 (395)
T PLN02872 39 PAGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADHGFDVWVGNVRGT 118 (395)
T ss_pred HcCCCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhCCCCccccccccc
Confidence 34778999999999999888764432221011123578899999765543322110 0122357889999999999996
Q ss_pred Cc-CChhHHHcc-ccc----CCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC---eeeEEEecC
Q 044808 514 DE-KGKQWHENG-KLL----NKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPE---LFKVAVADV 584 (623)
Q Consensus 514 ~~-~G~~~~~~~-~~~----~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~ 584 (623)
+. +|....... ... +......|+.++++++.+.. .+++.+.|+|.||.++.+++ .+|+ .++++++.+
T Consensus 119 ~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~---~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~ 194 (395)
T PLN02872 119 RWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSIT---NSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLC 194 (395)
T ss_pred ccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhcc---CCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhc
Confidence 53 443222211 111 11233579999999998753 47999999999999998666 5787 577888888
Q ss_pred Cccc
Q 044808 585 PSVD 588 (623)
Q Consensus 585 ~~~d 588 (623)
|+.-
T Consensus 195 P~~~ 198 (395)
T PLN02872 195 PISY 198 (395)
T ss_pred chhh
Confidence 8764
No 66
>PLN02511 hydrolase
Probab=98.83 E-value=6.1e-08 Score=103.28 Aligned_cols=140 Identities=19% Similarity=0.197 Sum_probs=95.2
Q ss_pred EeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhH
Q 044808 441 TESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQW 520 (623)
Q Consensus 441 ~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~ 520 (623)
.++..+...||..+....+.+... ......|+||.+||..+.+....+. .....++++||.|+++|.||-|+--..
T Consensus 71 ~~re~l~~~DG~~~~ldw~~~~~~-~~~~~~p~vvllHG~~g~s~~~y~~--~~~~~~~~~g~~vv~~d~rG~G~s~~~- 146 (388)
T PLN02511 71 YRRECLRTPDGGAVALDWVSGDDR-ALPADAPVLILLPGLTGGSDDSYVR--HMLLRARSKGWRVVVFNSRGCADSPVT- 146 (388)
T ss_pred eeEEEEECCCCCEEEEEecCcccc-cCCCCCCEEEEECCCCCCCCCHHHH--HHHHHHHHCCCEEEEEecCCCCCCCCC-
Confidence 455567788998887543322111 1123468999999977655432222 334556789999999999997653210
Q ss_pred HHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCe--eeEEEecCCccch
Q 044808 521 HENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPEL--FKVAVADVPSVDV 589 (623)
Q Consensus 521 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~--f~a~v~~~~~~d~ 589 (623)
.....-....+|+.+++++|..+- ...++.+.|.|.||.+++..+.++|+. .+++++..+-.|+
T Consensus 147 ---~~~~~~~~~~~Dl~~~i~~l~~~~--~~~~~~lvG~SlGg~i~~~yl~~~~~~~~v~~~v~is~p~~l 212 (388)
T PLN02511 147 ---TPQFYSASFTGDLRQVVDHVAGRY--PSANLYAAGWSLGANILVNYLGEEGENCPLSGAVSLCNPFDL 212 (388)
T ss_pred ---CcCEEcCCchHHHHHHHHHHHHHC--CCCCEEEEEechhHHHHHHHHHhcCCCCCceEEEEECCCcCH
Confidence 011112356789999999998752 235899999999999999999999986 6777777766665
No 67
>PRK10749 lysophospholipase L2; Provisional
Probab=98.82 E-value=2.4e-08 Score=104.25 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=89.0
Q ss_pred EeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhH
Q 044808 441 TESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQW 520 (623)
Q Consensus 441 ~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~ 520 (623)
-+..++...||.++......|. .+.|+||.+||-. ... ..|. .....|+++||.|+.+|+||.|..+...
T Consensus 30 ~~~~~~~~~~g~~l~~~~~~~~------~~~~~vll~HG~~-~~~-~~y~--~~~~~l~~~g~~v~~~D~~G~G~S~~~~ 99 (330)
T PRK10749 30 REEAEFTGVDDIPIRFVRFRAP------HHDRVVVICPGRI-ESY-VKYA--ELAYDLFHLGYDVLIIDHRGQGRSGRLL 99 (330)
T ss_pred ccceEEEcCCCCEEEEEEccCC------CCCcEEEEECCcc-chH-HHHH--HHHHHHHHCCCeEEEEcCCCCCCCCCCC
Confidence 3556677889998887644332 2347889999953 221 1233 3445688899999999999987654322
Q ss_pred HHcccccCCCchHhH----HHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccc
Q 044808 521 HENGKLLNKRNTFTD----FIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVD 588 (623)
Q Consensus 521 ~~~~~~~~~~~~~~D----~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 588 (623)
....++. ...++| +.+.++.+++. .+..++.++|+|.||.+++.++.++|+.++++|...|...
T Consensus 100 ~~~~~~~--~~~~~~~~~d~~~~~~~~~~~--~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl~~p~~~ 167 (330)
T PRK10749 100 DDPHRGH--VERFNDYVDDLAAFWQQEIQP--GPYRKRYALAHSMGGAILTLFLQRHPGVFDAIALCAPMFG 167 (330)
T ss_pred CCCCcCc--cccHHHHHHHHHHHHHHHHhc--CCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEEECchhc
Confidence 1100010 124444 44444444332 2457899999999999999888899999999999988653
No 68
>COG4099 Predicted peptidase [General function prediction only]
Probab=98.81 E-value=1.4e-08 Score=98.46 Aligned_cols=131 Identities=18% Similarity=0.152 Sum_probs=92.0
Q ss_pred CCCCeEEEEEEEeCCCccCCCCc-cEEEEEcCCCCCCCCC--CCCchhhhHHHHH--CCcEEEEEeccCCCcCChhHHHc
Q 044808 449 SDGEEIPISIVYRKNRVKLDGSD-PLLLFGYGSYGLGPSS--YSNSIASRLTILD--RGIIFAIAHVRGGDEKGKQWHEN 523 (623)
Q Consensus 449 ~dG~~i~~~l~~~~~~~~~~~~~-P~il~~~Gg~~~~~~~--~~~~~~~~~~~~~--~G~~v~~~~~RG~~~~G~~~~~~ 523 (623)
.-|.+++..++.|++. .+++++ |++|+.||+-....+. ..........|+. -++-|+.|.+- .-|.+.
T Consensus 169 ~tgneLkYrly~Pkdy-~pdkky~PLvlfLHgagq~g~dn~~~l~sg~gaiawa~pedqcfVlAPQy~------~if~d~ 241 (387)
T COG4099 169 STGNELKYRLYTPKDY-APDKKYYPLVLFLHGAGQGGSDNDKVLSSGIGAIAWAGPEDQCFVLAPQYN------PIFADS 241 (387)
T ss_pred ccCceeeEEEeccccc-CCCCccccEEEEEecCCCCCchhhhhhhcCccceeeecccCceEEEccccc------cccccc
Confidence 4688999999999999 788888 9999999974433221 1110011223333 25666666622 222111
Q ss_pred ccccCCCchHhHHHHHHH-HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccc
Q 044808 524 GKLLNKRNTFTDFIACAD-YLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVD 588 (623)
Q Consensus 524 ~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 588 (623)
. .+-.+...-.++.++ -|.++.-+|.+||.+.|-|.||+++.+++-++||.|+|++..+|=-|
T Consensus 242 e--~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~iaG~~d 305 (387)
T COG4099 242 E--EKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPIAGGGD 305 (387)
T ss_pred c--cccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhhheeeeecCCCc
Confidence 1 122344555666666 67788889999999999999999999999999999999999998777
No 69
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=98.80 E-value=8.7e-08 Score=97.24 Aligned_cols=131 Identities=12% Similarity=-0.045 Sum_probs=90.8
Q ss_pred eeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCC--CCCchhhhHHHHHCCcEEEEEeccCCCcCChh
Q 044808 442 ESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSS--YSNSIASRLTILDRGIIFAIAHVRGGDEKGKQ 519 (623)
Q Consensus 442 ~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~--~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~ 519 (623)
+.+.++. +|..+.+.+..|.+. +.|.+|++|||+...... .+. .....|+++||.|+.+|+||-|.....
T Consensus 3 ~~~~~~~-~~~~l~g~~~~p~~~-----~~~~vv~i~gg~~~~~g~~~~~~--~la~~l~~~G~~v~~~Dl~G~G~S~~~ 74 (274)
T TIGR03100 3 RALTFSC-EGETLVGVLHIPGAS-----HTTGVLIVVGGPQYRVGSHRQFV--LLARRLAEAGFPVLRFDYRGMGDSEGE 74 (274)
T ss_pred eeEEEEc-CCcEEEEEEEcCCCC-----CCCeEEEEeCCccccCCchhHHH--HHHHHHHHCCCEEEEeCCCCCCCCCCC
Confidence 3566664 578899988888642 235677788876544322 122 335678889999999999996653211
Q ss_pred HHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccc
Q 044808 520 WHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVD 588 (623)
Q Consensus 520 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 588 (623)
. ..-.....|+.+++++|.++- -.-++|.++|+|.||++++..+.. +..++++|...|.+.
T Consensus 75 ~------~~~~~~~~d~~~~~~~l~~~~-~g~~~i~l~G~S~Gg~~a~~~a~~-~~~v~~lil~~p~~~ 135 (274)
T TIGR03100 75 N------LGFEGIDADIAAAIDAFREAA-PHLRRIVAWGLCDAASAALLYAPA-DLRVAGLVLLNPWVR 135 (274)
T ss_pred C------CCHHHHHHHHHHHHHHHHhhC-CCCCcEEEEEECHHHHHHHHHhhh-CCCccEEEEECCccC
Confidence 0 111235689999999998751 122689999999999998877654 567899999988754
No 70
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=98.80 E-value=7.6e-09 Score=103.51 Aligned_cols=137 Identities=16% Similarity=0.187 Sum_probs=93.3
Q ss_pred CCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCC----cEEEEEeccCCCcCChhHHHc---
Q 044808 451 GEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRG----IIFAIAHVRGGDEKGKQWHEN--- 523 (623)
Q Consensus 451 G~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G----~~v~~~~~RG~~~~G~~~~~~--- 523 (623)
|..+.++|+.|++. ...+++|+|++.||- ......+........+++.| .+++.++.-+.......|+..
T Consensus 5 g~~~~~~VylP~~y-~~~~~~PvlylldG~--~~~~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~ 81 (251)
T PF00756_consen 5 GRDRRVWVYLPPGY-DPSKPYPVLYLLDGQ--SGWFRNGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPAGS 81 (251)
T ss_dssp TEEEEEEEEECTTG-GTTTTEEEEEEESHT--THHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSBCT
T ss_pred CCeEEEEEEECCCC-CCCCCCEEEEEccCC--ccccccchHHHHHHHHHHhCCCCceEEEEEeccccccccccccccccc
Confidence 66788999999997 678899999999995 11100111001223345554 555656655544333445422
Q ss_pred ---ccccCCCchHhHHH--HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchh
Q 044808 524 ---GKLLNKRNTFTDFI--ACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVL 590 (623)
Q Consensus 524 ---~~~~~~~~~~~D~~--~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~ 590 (623)
.....+...+.+++ +.+.++.++--+++++.+|+|.|+||+.++.++.++||+|.++++..|.++..
T Consensus 82 ~~~~~~~~~~~~~~~~l~~el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~~~~S~~~~~~ 153 (251)
T PF00756_consen 82 SRRADDSGGGDAYETFLTEELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAVIAFSGALDPS 153 (251)
T ss_dssp TCBCTSTTTHHHHHHHHHTHHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEEEEESEESETT
T ss_pred ccccccCCCCcccceehhccchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccccccCcccccc
Confidence 12223334556665 46777777766777779999999999999999999999999999999997764
No 71
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=98.77 E-value=2.8e-08 Score=110.84 Aligned_cols=129 Identities=18% Similarity=0.154 Sum_probs=81.5
Q ss_pred EEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHccccc--CCCc
Q 044808 454 IPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLL--NKRN 531 (623)
Q Consensus 454 i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~--~~~~ 531 (623)
+..-|..|++. ....+.||+||+|||--...............++.++.||+.+|||=|- +| |...+... .+-.
T Consensus 109 L~LnI~~P~~~-~~~~~lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~-~G--fl~~~~~~~~~gN~ 184 (535)
T PF00135_consen 109 LYLNIYTPSNA-SSNSKLPVMVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGA-FG--FLSLGDLDAPSGNY 184 (535)
T ss_dssp -EEEEEEETSS-SSTTSEEEEEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HH-HH--H-BSSSTTSHBSTH
T ss_pred HHHhhhhcccc-ccccccceEEEeecccccCCCcccccccccccccCCCEEEEEecccccc-cc--cccccccccCchhh
Confidence 44556788876 4344799999999983222221112112234567789999999999642 22 11111111 2455
Q ss_pred hHhHHHHHHHHHHHc--C-CCCCCcEEEEEeChHHHHHHHHHHhC--CCeeeEEEecCCc
Q 044808 532 TFTDFIACADYLIKS--N-YCSEDNLCIEGGSAGGMLIGAVLNMR--PELFKVAVADVPS 586 (623)
Q Consensus 532 ~~~D~~~~~~~l~~~--~-~~d~~ri~i~G~S~GG~l~~~~~~~~--p~~f~a~v~~~~~ 586 (623)
-+.|++.|++|+.++ . --||+||-|+|.|+||..+...+..- ..+|+.||++.|.
T Consensus 185 Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~sp~~~~LF~raI~~SGs 244 (535)
T PF00135_consen 185 GLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLSPSSKGLFHRAILQSGS 244 (535)
T ss_dssp HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHGGGGTTSBSEEEEES--
T ss_pred hhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeeccccccccccccccccc
Confidence 889999999999985 2 26999999999999999998887651 2599999999983
No 72
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=98.70 E-value=1.6e-07 Score=99.92 Aligned_cols=136 Identities=13% Similarity=0.021 Sum_probs=93.8
Q ss_pred eEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChh
Q 044808 440 VTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQ 519 (623)
Q Consensus 440 ~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~ 519 (623)
+.....+...+|..+++....|... .+.|+||++||..+.. ..|. .....|.++||.|+.+|+||.|.....
T Consensus 109 ~~~~~~~~~~~~~~l~~~~~~p~~~----~~~~~Vl~lHG~~~~~--~~~~--~~a~~L~~~Gy~V~~~D~rGhG~S~~~ 180 (395)
T PLN02652 109 RWATSLFYGARRNALFCRSWAPAAG----EMRGILIIIHGLNEHS--GRYL--HFAKQLTSCGFGVYAMDWIGHGGSDGL 180 (395)
T ss_pred eEEEEEEECCCCCEEEEEEecCCCC----CCceEEEEECCchHHH--HHHH--HHHHHHHHCCCEEEEeCCCCCCCCCCC
Confidence 3455567788898999886666432 3468999999964432 1244 556678889999999999997754322
Q ss_pred HHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC---eeeEEEecCCccch
Q 044808 520 WHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPE---LFKVAVADVPSVDV 589 (623)
Q Consensus 520 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~~~~d~ 589 (623)
+ +.........+|+.++++++..+. +..++.++|+|.||.+++.++ .+|+ .++++|...|..++
T Consensus 181 ~---~~~~~~~~~~~Dl~~~l~~l~~~~--~~~~i~lvGhSmGG~ial~~a-~~p~~~~~v~glVL~sP~l~~ 247 (395)
T PLN02652 181 H---GYVPSLDYVVEDTEAFLEKIRSEN--PGVPCFLFGHSTGGAVVLKAA-SYPSIEDKLEGIVLTSPALRV 247 (395)
T ss_pred C---CCCcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHHHHHHHHHH-hccCcccccceEEEECccccc
Confidence 1 101111223577888888887541 224799999999999998765 4664 78999999998654
No 73
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=98.60 E-value=5.1e-07 Score=96.28 Aligned_cols=135 Identities=13% Similarity=0.086 Sum_probs=88.9
Q ss_pred EeeeEEECC-CCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCC----cEEEEEeccCCCc
Q 044808 441 TESKRAYAS-DGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRG----IIFAIAHVRGGDE 515 (623)
Q Consensus 441 ~~~~~~~s~-dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G----~~v~~~~~RG~~~ 515 (623)
.+.+++.|. -|.+..++|+.|++. . .+++|+|++.||.......+.+ .....|++.| .+|+.+|.-++..
T Consensus 180 ~~~~~~~S~~Lg~~r~v~VY~P~~y-~-~~~~PvlyllDG~~w~~~~~~~---~~ld~li~~g~i~P~ivV~id~~~~~~ 254 (411)
T PRK10439 180 AKEIIWKSERLGNSRRVWIYTTGDA-A-PEERPLAILLDGQFWAESMPVW---PALDSLTHRGQLPPAVYLLIDAIDTTH 254 (411)
T ss_pred eEEEEEEccccCCceEEEEEECCCC-C-CCCCCEEEEEECHHhhhcCCHH---HHHHHHHHcCCCCceEEEEECCCCccc
Confidence 345555553 577788998889887 4 5689999999997644322211 2334677777 4567777532221
Q ss_pred CChhHHHcccccCCCchHhHHH--HHHHHHHHc-C-CCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCcc
Q 044808 516 KGKQWHENGKLLNKRNTFTDFI--ACADYLIKS-N-YCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSV 587 (623)
Q Consensus 516 ~G~~~~~~~~~~~~~~~~~D~~--~~~~~l~~~-~-~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 587 (623)
...+. .....+.+++ +.+-++.++ + ..|+++.+|.|.|+||+.++.++.++|++|.+++++.|-+
T Consensus 255 R~~el-------~~~~~f~~~l~~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v~s~Sgs~ 323 (411)
T PRK10439 255 RSQEL-------PCNADFWLAVQQELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPERFGCVLSQSGSF 323 (411)
T ss_pred ccccC-------CchHHHHHHHHHHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCcccccEEEEeccce
Confidence 11110 1112333332 233444443 2 3689999999999999999999999999999999999864
No 74
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=98.58 E-value=2.1e-07 Score=84.21 Aligned_cols=96 Identities=15% Similarity=0.133 Sum_probs=72.1
Q ss_pred EEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCCC
Q 044808 473 LLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSED 552 (623)
Q Consensus 473 ~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ 552 (623)
+||+.||..+. ...|. .....|+++||.|+.+|+||.+.... ..+..+.++++.+. ..|++
T Consensus 1 ~vv~~HG~~~~--~~~~~--~~~~~l~~~G~~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~-~~~~~ 61 (145)
T PF12695_consen 1 VVVLLHGWGGS--RRDYQ--PLAEALAEQGYAVVAFDYPGHGDSDG--------------ADAVERVLADIRAG-YPDPD 61 (145)
T ss_dssp EEEEECTTTTT--THHHH--HHHHHHHHTTEEEEEESCTTSTTSHH--------------SHHHHHHHHHHHHH-HCTCC
T ss_pred CEEEECCCCCC--HHHHH--HHHHHHHHCCCEEEEEecCCCCccch--------------hHHHHHHHHHHHhh-cCCCC
Confidence 57889997553 23455 66788999999999999999776511 11444444444332 12899
Q ss_pred cEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccc
Q 044808 553 NLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVD 588 (623)
Q Consensus 553 ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 588 (623)
||+++|+|+||.++..++.+. ..++++|+..|+.+
T Consensus 62 ~i~l~G~S~Gg~~a~~~~~~~-~~v~~~v~~~~~~~ 96 (145)
T PF12695_consen 62 RIILIGHSMGGAIAANLAARN-PRVKAVVLLSPYPD 96 (145)
T ss_dssp EEEEEEETHHHHHHHHHHHHS-TTESEEEEESESSG
T ss_pred cEEEEEEccCcHHHHHHhhhc-cceeEEEEecCccc
Confidence 999999999999999999887 67899999999654
No 75
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=98.56 E-value=3.6e-07 Score=93.42 Aligned_cols=136 Identities=13% Similarity=0.131 Sum_probs=98.3
Q ss_pred EeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhH
Q 044808 441 TESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQW 520 (623)
Q Consensus 441 ~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~ 520 (623)
..+-.+.+.||+.+......+.. .+.-+||.+||.-... . .|. .....|..+||.|+..|.||-|...+
T Consensus 9 ~~~~~~~~~d~~~~~~~~~~~~~-----~~~g~Vvl~HG~~Eh~-~-ry~--~la~~l~~~G~~V~~~D~RGhG~S~r-- 77 (298)
T COG2267 9 RTEGYFTGADGTRLRYRTWAAPE-----PPKGVVVLVHGLGEHS-G-RYE--ELADDLAARGFDVYALDLRGHGRSPR-- 77 (298)
T ss_pred cccceeecCCCceEEEEeecCCC-----CCCcEEEEecCchHHH-H-HHH--HHHHHHHhCCCEEEEecCCCCCCCCC--
Confidence 34556778899998877544432 1227999999963322 1 233 44578888999999999999887654
Q ss_pred HHcccccCCCchHhHHHHHHHHHHHcCC--CCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchhh
Q 044808 521 HENGKLLNKRNTFTDFIACADYLIKSNY--CSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVLT 591 (623)
Q Consensus 521 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~--~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~ 591 (623)
.+ ......|+|.++.++.+++.-. .-..++.++|+|.||++++..+.+++..+.++|..+|++.+..
T Consensus 78 ~~----rg~~~~f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vLssP~~~l~~ 146 (298)
T COG2267 78 GQ----RGHVDSFADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVLSSPALGLGG 146 (298)
T ss_pred CC----cCCchhHHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEEECccccCCh
Confidence 11 1112347777777777665422 1248999999999999999999999999999999999988763
No 76
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.55 E-value=8.1e-05 Score=75.71 Aligned_cols=239 Identities=13% Similarity=-0.008 Sum_probs=127.8
Q ss_pred eeeEECCCCCEEEEEEeC-ceEEEEECCCCCcccccc--CccceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcccEE
Q 044808 153 TAFKVSPNNKLVAFRENC-GTVCVIDSETGAPAEKPI--QGCLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSKDTC 229 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~-~~l~v~dl~tg~~~~~~i--~~~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~d~l 229 (623)
..+.+||||+.++.+... +.|+++|+.+++.+.... .....++|+||++.+|+..... ..|+.+++.+.. ...
T Consensus 34 ~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~--~~l~~~d~~~~~--~~~ 109 (300)
T TIGR03866 34 RGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDD--NLVTVIDIETRK--VLA 109 (300)
T ss_pred CceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCC--CeEEEEECCCCe--EEe
Confidence 457899999987555433 389999999998754211 1223489999995445443211 168888887642 122
Q ss_pred EEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeEEEEeeCCEEEE-EeCCCCCCeEE
Q 044808 230 LYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDMFVSHRGNQFFI-RRSDGGFHSDV 308 (623)
Q Consensus 230 v~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~~~~~dg~~ly~-sn~~g~~~~~L 308 (623)
.++.. .....+.++|||+++++.... .+.++.++..++.....+..........++++|..|++ +..+ ..|
T Consensus 110 ~~~~~--~~~~~~~~~~dg~~l~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----~~v 181 (300)
T TIGR03866 110 EIPVG--VEPEGMAVSPDGKIVVNTSET--TNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIG----GTV 181 (300)
T ss_pred EeeCC--CCcceEEECCCCCEEEEEecC--CCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCC----CEE
Confidence 22211 112457889999998775432 34566678776541111111111112357888888888 5444 357
Q ss_pred EEEeCCCCCcee-eEEcC-C---CCceEeEEE--EeCCEEEEEEeeCCcceEEEEECCCCCCCcccccCCceeecCCCce
Q 044808 309 LTCPVDNTFETT-VLIPH-R---ERVRVEEVR--LFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSEL 381 (623)
Q Consensus 309 ~~~d~~~~~~~~-~li~~-~---~d~~i~~~~--~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~ 381 (623)
..+|++++.... +-... . ......++. ..++.+++....+ ..+.++++.+ ++.. ..+.....
T Consensus 182 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~--~~i~v~d~~~-~~~~------~~~~~~~~-- 250 (300)
T TIGR03866 182 SVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA--NRVAVVDAKT-YEVL------DYLLVGQR-- 250 (300)
T ss_pred EEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC--CeEEEEECCC-CcEE------EEEEeCCC--
Confidence 777776653211 11110 0 011112333 3455665544332 4588888864 4321 11111111
Q ss_pred EEEeeeccccCCcCCceEEEEeecCCCCCeEEEEECCCCcE
Q 044808 382 CISRIHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTGIS 422 (623)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~ 422 (623)
+ ....+++++..++.+. ..-+++..+|+.+++.
T Consensus 251 -~----~~~~~~~~g~~l~~~~---~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 251 -V----WQLAFTPDEKYLLTTN---GVSNDVSVIDVAALKV 283 (300)
T ss_pred -c----ceEEECCCCCEEEEEc---CCCCeEEEEECCCCcE
Confidence 1 1223456666654331 2234789999888774
No 77
>PRK11460 putative hydrolase; Provisional
Probab=98.55 E-value=3.7e-07 Score=90.12 Aligned_cols=114 Identities=17% Similarity=0.131 Sum_probs=78.8
Q ss_pred CCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCC----cCChhHHHcccccCCCc-------hHhHHH
Q 044808 469 GSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGD----EKGKQWHENGKLLNKRN-------TFTDFI 537 (623)
Q Consensus 469 ~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~----~~G~~~~~~~~~~~~~~-------~~~D~~ 537 (623)
.+.|+||+.||.-+.. ..|. .....|...++.+.++.+||-. +-|..|+... .....+ ....+.
T Consensus 14 ~~~~~vIlLHG~G~~~--~~~~--~l~~~l~~~~~~~~~i~~~g~~~~~~~~g~~W~~~~-~~~~~~~~~~~~~~~~~l~ 88 (232)
T PRK11460 14 PAQQLLLLFHGVGDNP--VAMG--EIGSWFAPAFPDALVVSVGGPEPSGNGAGRQWFSVQ-GITEDNRQARVAAIMPTFI 88 (232)
T ss_pred CCCcEEEEEeCCCCCh--HHHH--HHHHHHHHHCCCCEEECCCCCCCcCCCCCcccccCC-CCCccchHHHHHHHHHHHH
Confidence 4579999999953332 2345 5556677777766677777732 3367787531 111222 223445
Q ss_pred HHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCcc
Q 044808 538 ACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSV 587 (623)
Q Consensus 538 ~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 587 (623)
+.++++.++..++++||+++|.|+||.+++.++.++|++++++|+..|..
T Consensus 89 ~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~vv~~sg~~ 138 (232)
T PRK11460 89 ETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGRVIAFSGRY 138 (232)
T ss_pred HHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceEEEEecccc
Confidence 56677777777899999999999999999998888999989888776653
No 78
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.52 E-value=1.2e-06 Score=86.35 Aligned_cols=138 Identities=13% Similarity=0.094 Sum_probs=97.7
Q ss_pred EeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCC-hh
Q 044808 441 TESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKG-KQ 519 (623)
Q Consensus 441 ~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G-~~ 519 (623)
...-.++..+|.++-.-...|.+. ..+.-+|+++|| |+......|. .....|+..||.|...|++|.|... ..
T Consensus 27 ~~~~~~~n~rG~~lft~~W~p~~~---~~pr~lv~~~HG-~g~~~s~~~~--~~a~~l~~~g~~v~a~D~~GhG~SdGl~ 100 (313)
T KOG1455|consen 27 YSESFFTNPRGAKLFTQSWLPLSG---TEPRGLVFLCHG-YGEHSSWRYQ--STAKRLAKSGFAVYAIDYEGHGRSDGLH 100 (313)
T ss_pred eeeeeEEcCCCCEeEEEecccCCC---CCCceEEEEEcC-CcccchhhHH--HHHHHHHhCCCeEEEeeccCCCcCCCCc
Confidence 344557788999888765666442 245567888898 5555545666 6778899999999999999976532 11
Q ss_pred HHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccc
Q 044808 520 WHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVD 588 (623)
Q Consensus 520 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 588 (623)
+.-..-...++|+++-.+....+.--.---..++|+|.||-+++.+..++|+.|..+|..+|+.=
T Consensus 101 ----~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~ilvaPmc~ 165 (313)
T KOG1455|consen 101 ----AYVPSFDLVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAILVAPMCK 165 (313)
T ss_pred ----ccCCcHHHHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccceeeecccc
Confidence 01111123566666666665555433335678999999999999999999999999999999653
No 79
>COG1647 Esterase/lipase [General function prediction only]
Probab=98.49 E-value=3.8e-07 Score=85.44 Aligned_cols=101 Identities=16% Similarity=0.114 Sum_probs=79.3
Q ss_pred cEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCC
Q 044808 472 PLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSE 551 (623)
Q Consensus 472 P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 551 (623)
-.+|.+||=-|.+.+ .. .-...|-++||.|-+|+++|-|-.++.|.+-+..+| +.|+.++-++|.++||
T Consensus 16 ~AVLllHGFTGt~~D--vr--~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~~~DW----~~~v~d~Y~~L~~~gy--- 84 (243)
T COG1647 16 RAVLLLHGFTGTPRD--VR--MLGRYLNENGYTVYAPRYPGHGTLPEDFLKTTPRDW----WEDVEDGYRDLKEAGY--- 84 (243)
T ss_pred EEEEEEeccCCCcHH--HH--HHHHHHHHCCceEecCCCCCCCCCHHHHhcCCHHHH----HHHHHHHHHHHHHcCC---
Confidence 788889983333322 22 334567778999999999999998888888776666 5899999999999998
Q ss_pred CcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCC
Q 044808 552 DNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVP 585 (623)
Q Consensus 552 ~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 585 (623)
+.|+|.|-|.||.+++.++.++| . |.+|.-++
T Consensus 85 ~eI~v~GlSmGGv~alkla~~~p-~-K~iv~m~a 116 (243)
T COG1647 85 DEIAVVGLSMGGVFALKLAYHYP-P-KKIVPMCA 116 (243)
T ss_pred CeEEEEeecchhHHHHHHHhhCC-c-cceeeecC
Confidence 79999999999999999999888 3 44444443
No 80
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=98.49 E-value=7e-07 Score=86.32 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=74.3
Q ss_pred EEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHc-CCCCCC
Q 044808 474 LLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKS-NYCSED 552 (623)
Q Consensus 474 il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ 552 (623)
||++||..+.. ..|. .....| .+||.|+.+|.||-|.....- ......++|..+.+..++++ +. +
T Consensus 1 vv~~hG~~~~~--~~~~--~~~~~l-~~~~~v~~~d~~G~G~s~~~~------~~~~~~~~~~~~~l~~~l~~~~~---~ 66 (228)
T PF12697_consen 1 VVFLHGFGGSS--ESWD--PLAEAL-ARGYRVIAFDLPGHGRSDPPP------DYSPYSIEDYAEDLAELLDALGI---K 66 (228)
T ss_dssp EEEE-STTTTG--GGGH--HHHHHH-HTTSEEEEEECTTSTTSSSHS------SGSGGSHHHHHHHHHHHHHHTTT---S
T ss_pred eEEECCCCCCH--HHHH--HHHHHH-hCCCEEEEEecCCcccccccc------ccCCcchhhhhhhhhhccccccc---c
Confidence 68899976555 3455 545555 689999999999966543211 01234556666655555543 33 7
Q ss_pred cEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchh
Q 044808 553 NLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVL 590 (623)
Q Consensus 553 ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~ 590 (623)
++.++|+|+||.+++.++.++|++++++|...|.....
T Consensus 67 ~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl~~~~~~~~ 104 (228)
T PF12697_consen 67 KVILVGHSMGGMIALRLAARYPDRVKGLVLLSPPPPLP 104 (228)
T ss_dssp SEEEEEETHHHHHHHHHHHHSGGGEEEEEEESESSSHH
T ss_pred cccccccccccccccccccccccccccceeeccccccc
Confidence 99999999999999999999999999999999988653
No 81
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.49 E-value=4.9e-07 Score=91.88 Aligned_cols=131 Identities=15% Similarity=0.076 Sum_probs=95.5
Q ss_pred EeeeEEECC-CCCeEEEEEEEeCCCc--cCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCC
Q 044808 441 TESKRAYAS-DGEEIPISIVYRKNRV--KLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKG 517 (623)
Q Consensus 441 ~~~~~~~s~-dG~~i~~~l~~~~~~~--~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G 517 (623)
...+++... .+.++++++.+|.... ..-.+.|+|++.||- |.. ..+|. ...+.|++.||+|+.++.=|+..-+
T Consensus 38 ~~~i~~~~~~r~~~~~v~~~~p~~~~~~~~~~~~PlvvlshG~-Gs~-~~~f~--~~A~~lAs~Gf~Va~~~hpgs~~~~ 113 (365)
T COG4188 38 FVTITLNDPQRDRERPVDLRLPQGGTGTVALYLLPLVVLSHGS-GSY-VTGFA--WLAEHLASYGFVVAAPDHPGSNAGG 113 (365)
T ss_pred EEEEeccCcccCCccccceeccCCCccccccCcCCeEEecCCC-CCC-ccchh--hhHHHHhhCceEEEeccCCCccccc
Confidence 444555443 2567888888887640 011489999999994 333 44777 7789999999999999999987655
Q ss_pred hhHHHccccc----CCCchHhHHHHHHHHHHHc---C----CCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 044808 518 KQWHENGKLL----NKRNTFTDFIACADYLIKS---N----YCSEDNLCIEGGSAGGMLIGAVLNMRPE 575 (623)
Q Consensus 518 ~~~~~~~~~~----~~~~~~~D~~~~~~~l~~~---~----~~d~~ri~i~G~S~GG~l~~~~~~~~p~ 575 (623)
..=+.++... ....-..|+-..+++|.+. + -+|+.||++.|+|+||+.++.++..+.+
T Consensus 114 ~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 114 APAAYAGPGSYAPAEWWERPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred CChhhcCCcccchhhhhcccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhcccccc
Confidence 5544444211 1234567888899998877 5 4899999999999999999988876654
No 82
>PRK00870 haloalkane dehalogenase; Provisional
Probab=98.47 E-value=3.3e-06 Score=86.98 Aligned_cols=128 Identities=12% Similarity=0.105 Sum_probs=83.8
Q ss_pred EeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhH
Q 044808 441 TESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQW 520 (623)
Q Consensus 441 ~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~ 520 (623)
...+.+..-||..+... |.... ++ ..|.||++||.+... ..|. .....|.++||.|+.+|.||-|.....
T Consensus 21 ~~~~~~~~~~~~~~~i~--y~~~G-~~--~~~~lvliHG~~~~~--~~w~--~~~~~L~~~gy~vi~~Dl~G~G~S~~~- 90 (302)
T PRK00870 21 PHYVDVDDGDGGPLRMH--YVDEG-PA--DGPPVLLLHGEPSWS--YLYR--KMIPILAAAGHRVIAPDLIGFGRSDKP- 90 (302)
T ss_pred ceeEeecCCCCceEEEE--EEecC-CC--CCCEEEEECCCCCch--hhHH--HHHHHHHhCCCEEEEECCCCCCCCCCC-
Confidence 45566766677766543 22211 12 247889999964332 2355 445566668999999999996643211
Q ss_pred HHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCC
Q 044808 521 HENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVP 585 (623)
Q Consensus 521 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 585 (623)
......++++..+.+..++++ .+-+++.+.|+|+||.++..++.++|++.+++|...+
T Consensus 91 -----~~~~~~~~~~~a~~l~~~l~~--l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl~~~ 148 (302)
T PRK00870 91 -----TRREDYTYARHVEWMRSWFEQ--LDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVVANT 148 (302)
T ss_pred -----CCcccCCHHHHHHHHHHHHHH--cCCCCEEEEEEChHHHHHHHHHHhChhheeEEEEeCC
Confidence 001123456665555555543 2346899999999999999999999999988887764
No 83
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=98.47 E-value=4.2e-07 Score=92.34 Aligned_cols=106 Identities=11% Similarity=0.003 Sum_probs=69.6
Q ss_pred CccEEEEEcCCCCCCCCCCCCch-hhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCC
Q 044808 470 SDPLLLFGYGSYGLGPSSYSNSI-ASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNY 548 (623)
Q Consensus 470 ~~P~il~~~Gg~~~~~~~~~~~~-~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 548 (623)
..|.||++||...... .|... .....+++.||.|+.+|.||.|........ ........+|+.+.++.+
T Consensus 29 ~~~~ivllHG~~~~~~--~~~~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~---~~~~~~~~~~l~~~l~~l----- 98 (282)
T TIGR03343 29 NGEAVIMLHGGGPGAG--GWSNYYRNIGPFVDAGYRVILKDSPGFNKSDAVVMD---EQRGLVNARAVKGLMDAL----- 98 (282)
T ss_pred CCCeEEEECCCCCchh--hHHHHHHHHHHHHhCCCEEEEECCCCCCCCCCCcCc---ccccchhHHHHHHHHHHc-----
Confidence 3467899999643332 23200 223467788999999999997654221100 000111234444444332
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCc
Q 044808 549 CSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPS 586 (623)
Q Consensus 549 ~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 586 (623)
+.+++.+.|+|+||.++..++.++|++++++|+..|.
T Consensus 99 -~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 135 (282)
T TIGR03343 99 -DIEKAHLVGNSMGGATALNFALEYPDRIGKLILMGPG 135 (282)
T ss_pred -CCCCeeEEEECchHHHHHHHHHhChHhhceEEEECCC
Confidence 4579999999999999999999999999999987764
No 84
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.47 E-value=7.7e-05 Score=77.68 Aligned_cols=191 Identities=14% Similarity=0.211 Sum_probs=117.9
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccC-------ccceeEEecCC-eEEEEEeCCCCCCeEEEEECCC
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQ-------GCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGE 222 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~-------~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt 222 (623)
.+..+++||||++.|-+...++++++|=.+|+.+-+ +. .+..++|+||+ +|+-...|. .+..+++.+
T Consensus 192 FV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~-l~~~~aHkGsIfalsWsPDs~~~~T~SaDk----t~KIWdVs~ 266 (603)
T KOG0318|consen 192 FVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGE-LEDSDAHKGSIFALSWSPDSTQFLTVSADK----TIKIWDVST 266 (603)
T ss_pred ceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEE-ecCCCCccccEEEEEECCCCceEEEecCCc----eEEEEEeec
Confidence 467899999999999888777999999999987652 22 22359999999 676665543 244556655
Q ss_pred CCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeE-EEEeeCCEEEEEeCC
Q 044808 223 EQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDM-FVSHRGNQFFIRRSD 301 (623)
Q Consensus 223 ~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~-~~~~dg~~ly~sn~~ 301 (623)
.....+++....-+...+++-|..| .|+-.+.+ ..|-++++.++..++.+..+..++.. .+++++++||-...+
T Consensus 267 ~slv~t~~~~~~v~dqqvG~lWqkd--~lItVSl~---G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 267 NSLVSTWPMGSTVEDQQVGCLWQKD--HLITVSLS---GTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred cceEEEeecCCchhceEEEEEEeCC--eEEEEEcC---cEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccC
Confidence 5333334443332235677778733 33332322 24456676666533444455555543 577888666653333
Q ss_pred CCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeC-CEEEEEEeeCCcceEEEEECC
Q 044808 302 GGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFA-DHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 302 g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~-~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
+.|...+...+...+ +.+......|.++.... +.|+-...++. |+++++.
T Consensus 342 ----G~I~~W~~~~g~~~~-~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~---l~~~~~~ 392 (603)
T KOG0318|consen 342 ----GHINSWDSGSGTSDR-LAGKGHTNQIKGMAASESGELFTIGWDDT---LRVISLK 392 (603)
T ss_pred ----ceEEEEecCCccccc-cccccccceEEEEeecCCCcEEEEecCCe---EEEEecc
Confidence 468888876654322 44444445677887766 67777776654 6666664
No 85
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.46 E-value=1.4e-06 Score=84.01 Aligned_cols=137 Identities=17% Similarity=0.154 Sum_probs=102.3
Q ss_pred eEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHH-CCcEEEEEeccCCCcCCh
Q 044808 440 VTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILD-RGIIFAIAHVRGGDEKGK 518 (623)
Q Consensus 440 ~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~RG~~~~G~ 518 (623)
..+.+..+++-|..+-+..+.|+. ...++|||.||- +.+.+-. ......|.. -.+.++.-||+|.|..+.
T Consensus 34 ~v~v~~~~t~rgn~~~~~y~~~~~-----~~~~~lly~hGN---a~Dlgq~-~~~~~~l~~~ln~nv~~~DYSGyG~S~G 104 (258)
T KOG1552|consen 34 FVEVFKVKTSRGNEIVCMYVRPPE-----AAHPTLLYSHGN---AADLGQM-VELFKELSIFLNCNVVSYDYSGYGRSSG 104 (258)
T ss_pred ccceEEeecCCCCEEEEEEEcCcc-----ccceEEEEcCCc---ccchHHH-HHHHHHHhhcccceEEEEecccccccCC
Confidence 355666777888888887666653 256999999995 1111211 011233333 399999999999776543
Q ss_pred hHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchhhhhhC
Q 044808 519 QWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVLTTILF 595 (623)
Q Consensus 519 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~ 595 (623)
.- --.+..+|+.++.+||.+..- .+++|.++|.|-|-..+...+.+.| -+|+|...||++.+.-|..
T Consensus 105 ~p-------sE~n~y~Di~avye~Lr~~~g-~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL~SPf~S~~rv~~~ 171 (258)
T KOG1552|consen 105 KP-------SERNLYADIKAVYEWLRNRYG-SPERIILYGQSIGTVPTVDLASRYP--LAAVVLHSPFTSGMRVAFP 171 (258)
T ss_pred Cc-------ccccchhhHHHHHHHHHhhcC-CCceEEEEEecCCchhhhhHhhcCC--cceEEEeccchhhhhhhcc
Confidence 22 223899999999999998755 7899999999999999999999988 6999999999999877755
No 86
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.46 E-value=2.2e-05 Score=80.59 Aligned_cols=241 Identities=12% Similarity=0.138 Sum_probs=150.0
Q ss_pred eeeEECCC--CCEEEEEEeCceEEEEECCCCCccccccC-ccc-eeEEecCC-eEEEEEe--CCCCCC-eEEEEECCCCC
Q 044808 153 TAFKVSPN--NKLVAFRENCGTVCVIDSETGAPAEKPIQ-GCL-EFEWAGDE-AFLYTRR--NAIAEP-QVWFHKLGEEQ 224 (623)
Q Consensus 153 ~~~~~SPD--G~~lA~~~~~~~l~v~dl~tg~~~~~~i~-~~~-~~~WspDg-~l~y~~~--d~~~~~-~v~~~~lgt~~ 224 (623)
.+.-.-|| |.+|.|+... .||..++.+|+.+..+-. ++. ...++||| +++|++. ...... .||..+...++
T Consensus 40 ~n~~l~PDI~GD~IiFt~~D-dlWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge 118 (668)
T COG4946 40 KNYYLNPDIYGDRIIFTCCD-DLWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGE 118 (668)
T ss_pred hhhhcCCcccCcEEEEEech-HHHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCc
Confidence 33444555 7788998876 699999999987642111 233 38899999 8888764 333344 89999988887
Q ss_pred cccEEEEeecCCceeEEEEEcCCCcEEEEEeecc---eeeEEEEEECCCCCceeec--CCCccceeEEEEeeCCEEEE-E
Q 044808 225 SKDTCLYRTREDLFDLTLEASESKKFLFVKSKTK---VTGFVYYFDVSRPETLWFL--PPWHLGIDMFVSHRGNQFFI-R 298 (623)
Q Consensus 225 ~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~---~~s~l~~~dl~~~~~~~~l--~~~~~~~~~~~~~dg~~ly~-s 298 (623)
.++..-|. ..|.--+.|+|||+.|+.+-... ...++|.++.++.+ ...| -|.. ..+..+ +.+++ .
T Consensus 119 ~kRiTyfG---r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~-~e~LnlGpat----hiv~~d-g~ivigR 189 (668)
T COG4946 119 AKRITYFG---RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIK-TEPLNLGPAT----HIVIKD-GIIVIGR 189 (668)
T ss_pred EEEEEEec---cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCce-eeeccCCcee----eEEEeC-CEEEEcc
Confidence 65554453 22333356999999877643221 24689999988764 2222 2211 113333 36666 5
Q ss_pred eCC---------CCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCCCccccc
Q 044808 299 RSD---------GGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQ 369 (623)
Q Consensus 299 n~~---------g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~ 369 (623)
|.- |..+++||.-.......++ ++.-+. .+..--+.++++++....+|..+|+-.+++ |+.+
T Consensus 190 ntydLP~WK~YkGGtrGklWis~d~g~tFeK-~vdl~~--~vS~PmIV~~RvYFlsD~eG~GnlYSvdld--GkDl---- 260 (668)
T COG4946 190 NTYDLPHWKGYKGGTRGKLWISSDGGKTFEK-FVDLDG--NVSSPMIVGERVYFLSDHEGVGNLYSVDLD--GKDL---- 260 (668)
T ss_pred CcccCcccccccCCccceEEEEecCCcceee-eeecCC--CcCCceEEcceEEEEecccCccceEEeccC--Cchh----
Confidence 531 2345666654332222222 333322 244555678999999999999999999998 7654
Q ss_pred CCceeecCCCceEEEeeeccccCCcCCceEEEEeecCCCCCeEEEEECCCCcEEEEE
Q 044808 370 GGRTVDIFKSELCISRIHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTGISVLKK 426 (623)
Q Consensus 370 ~~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~ 426 (623)
.+...|.+ |- .-+.+.|+.+++|+ ..+.+|.||+++.+.+.+.
T Consensus 261 -rrHTnFtd--YY------~R~~nsDGkrIvFq-----~~GdIylydP~td~lekld 303 (668)
T COG4946 261 -RRHTNFTD--YY------PRNANSDGKRIVFQ-----NAGDIYLYDPETDSLEKLD 303 (668)
T ss_pred -hhcCCchh--cc------ccccCCCCcEEEEe-----cCCcEEEeCCCcCcceeee
Confidence 22233332 21 13445688998884 5679999999988765543
No 87
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=98.46 E-value=5.4e-07 Score=83.63 Aligned_cols=136 Identities=16% Similarity=0.157 Sum_probs=102.6
Q ss_pred CceEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCC
Q 044808 438 NYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKG 517 (623)
Q Consensus 438 ~~~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G 517 (623)
++.-|+++..++|-+++++|++.-. ...|++||.||--| .+. .+- -..+-.+.+.+..|+++.|||=|-.-
T Consensus 51 n~pye~i~l~T~D~vtL~a~~~~~E------~S~pTlLyfh~NAG-NmG-hr~-~i~~~fy~~l~mnv~ivsYRGYG~S~ 121 (300)
T KOG4391|consen 51 NMPYERIELRTRDKVTLDAYLMLSE------SSRPTLLYFHANAG-NMG-HRL-PIARVFYVNLKMNVLIVSYRGYGKSE 121 (300)
T ss_pred CCCceEEEEEcCcceeEeeeeeccc------CCCceEEEEccCCC-ccc-chh-hHHHHHHHHcCceEEEEEeeccccCC
Confidence 4456889999999999999988721 36899999998543 222 222 02344567789999999999833211
Q ss_pred hhHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccch
Q 044808 518 KQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDV 589 (623)
Q Consensus 518 ~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~ 589 (623)
..--+ ..-.-|-.++++||..++..|..+|.++|.|-||-.+..++...-++..|+|...-|+..
T Consensus 122 GspsE-------~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~ivENTF~SI 186 (300)
T KOG4391|consen 122 GSPSE-------EGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAIIVENTFLSI 186 (300)
T ss_pred CCccc-------cceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeeeeechhccc
Confidence 11111 123468889999999999999999999999999999998888888899999988776655
No 88
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=98.45 E-value=1.9e-06 Score=87.02 Aligned_cols=107 Identities=17% Similarity=0.112 Sum_probs=73.6
Q ss_pred CccEEEEEcCCCCCCCCCCCCchhhhHHHHHC-CcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCC
Q 044808 470 SDPLLLFGYGSYGLGPSSYSNSIASRLTILDR-GIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNY 548 (623)
Q Consensus 470 ~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~-G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 548 (623)
+.|.||++||+++.+.. .|. ....++.+ ||.|+.+|.||.|..-.. . ...+..+++++.+.+..++++-
T Consensus 24 ~~~~vl~~hG~~g~~~~-~~~---~~~~~l~~~g~~vi~~d~~G~G~s~~~--~---~~~~~~~~~~~~~~~~~~~~~~- 93 (288)
T TIGR01250 24 EKIKLLLLHGGPGMSHE-YLE---NLRELLKEEGREVIMYDQLGCGYSDQP--D---DSDELWTIDYFVDELEEVREKL- 93 (288)
T ss_pred CCCeEEEEcCCCCccHH-HHH---HHHHHHHhcCCEEEEEcCCCCCCCCCC--C---cccccccHHHHHHHHHHHHHHc-
Confidence 35778889999876532 222 23344554 999999999997643110 0 0011245666666666666542
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCcc
Q 044808 549 CSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSV 587 (623)
Q Consensus 549 ~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 587 (623)
+.+++.++|+|+||.++..++..+|+.++++|...++.
T Consensus 94 -~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 131 (288)
T TIGR01250 94 -GLDKFYLLGHSWGGMLAQEYALKYGQHLKGLIISSMLD 131 (288)
T ss_pred -CCCcEEEEEeehHHHHHHHHHHhCccccceeeEecccc
Confidence 34679999999999999999999999999988776643
No 89
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.44 E-value=0.00031 Score=72.59 Aligned_cols=199 Identities=11% Similarity=0.024 Sum_probs=102.7
Q ss_pred EeeeEECCCCCEEEEEEeCc---eEEEEECCCCCcccccc-C--ccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCC
Q 044808 152 ITAFKVSPNNKLVAFRENCG---TVCVIDSETGAPAEKPI-Q--GCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQ 224 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~---~l~v~dl~tg~~~~~~i-~--~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~ 224 (623)
...-.|.+||++|.|..+.. +||++||++++..+.+- + +..+..+++++ .++|.+... .|++.+|.|..
T Consensus 38 F~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~----~l~~vdL~T~e 113 (386)
T PF14583_consen 38 FYQNCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGR----SLRRVDLDTLE 113 (386)
T ss_dssp TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTT----EEEEEETTT--
T ss_pred ecCCCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCC----eEEEEECCcCc
Confidence 34568999999999998755 99999999999876321 1 23357889999 788887432 69999999874
Q ss_pred cccEEEEeecCCceeEEEE--EcCCCcEEEEEeecc-------------------eeeEEEEEECCCCCceeecCCCccc
Q 044808 225 SKDTCLYRTREDLFDLTLE--ASESKKFLFVKSKTK-------------------VTGFVYYFDVSRPETLWFLPPWHLG 283 (623)
Q Consensus 225 ~~d~lv~~~~~~~~~~~~~--~S~Dg~~l~i~s~~~-------------------~~s~l~~~dl~~~~~~~~l~~~~~~ 283 (623)
..+||+.++ .|..... ...|+..++...... ..+.|+.+|+.+|+ .+.+.....-
T Consensus 114 --~~~vy~~p~-~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~-~~~v~~~~~w 189 (386)
T PF14583_consen 114 --ERVVYEVPD-DWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE-RKVVFEDTDW 189 (386)
T ss_dssp --EEEEEE--T-TEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---EEEEEEESS-
T ss_pred --EEEEEECCc-ccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc-eeEEEecCcc
Confidence 467888664 3443222 356777765543211 13689999999987 6655443321
Q ss_pred ee-EEEEeeCCEEEE-EeCCCC--CCeEEEEEeCCCCCceeeEEcCCCCceEeE---EEEeCCEEEEEEeeCCcce--EE
Q 044808 284 ID-MFVSHRGNQFFI-RRSDGG--FHSDVLTCPVDNTFETTVLIPHRERVRVEE---VRLFADHIAVYELEEGLPK--IT 354 (623)
Q Consensus 284 ~~-~~~~~dg~~ly~-sn~~g~--~~~~L~~~d~~~~~~~~~li~~~~d~~i~~---~~~~~~~Lv~~~~~~g~~~--l~ 354 (623)
.. ..++|....++. ...+.. -..+|+.++.++.... .+-.+.+. .+.+ +..++..|++...-.+... |.
T Consensus 190 lgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~-~v~~~~~~-e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~ 267 (386)
T PF14583_consen 190 LGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVK-KVHRRMEG-ESVGHEFWVPDGSTIWYDSYTPGGQDFWIA 267 (386)
T ss_dssp EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---E-ESS---TT-EEEEEEEE-TTSS-EEEEEEETTT--EEEE
T ss_pred ccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcce-eeecCCCC-cccccccccCCCCEEEEEeecCCCCceEEE
Confidence 11 245665544544 544322 2358999997665321 13333332 2323 3334567776555444433 45
Q ss_pred EEECCC
Q 044808 355 TYCLPP 360 (623)
Q Consensus 355 v~~l~~ 360 (623)
-+++.+
T Consensus 268 ~~d~~t 273 (386)
T PF14583_consen 268 GYDPDT 273 (386)
T ss_dssp EE-TTT
T ss_pred eeCCCC
Confidence 555654
No 90
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=98.43 E-value=1.2e-06 Score=86.12 Aligned_cols=104 Identities=17% Similarity=0.098 Sum_probs=72.5
Q ss_pred cEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHH-HHHHHHcCCCC
Q 044808 472 PLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIAC-ADYLIKSNYCS 550 (623)
Q Consensus 472 P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d 550 (623)
|+||++||..+... .|. .....|. +||.|+.+|.||-|+-... ......++++++.. +..+.+. .+
T Consensus 2 ~~vv~~hG~~~~~~--~~~--~~~~~L~-~~~~v~~~d~~g~G~s~~~------~~~~~~~~~~~~~~~~~~~~~~--~~ 68 (251)
T TIGR03695 2 PVLVFLHGFLGSGA--DWQ--ALIELLG-PHFRCLAIDLPGHGSSQSP------DEIERYDFEEAAQDILATLLDQ--LG 68 (251)
T ss_pred CEEEEEcCCCCchh--hHH--HHHHHhc-ccCeEEEEcCCCCCCCCCC------CccChhhHHHHHHHHHHHHHHH--cC
Confidence 78899999654332 344 4555665 8999999999996654211 11123455555544 4444443 24
Q ss_pred CCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccc
Q 044808 551 EDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVD 588 (623)
Q Consensus 551 ~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 588 (623)
.+++.++|+|+||.++..++.++|+.++++|...|...
T Consensus 69 ~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~lil~~~~~~ 106 (251)
T TIGR03695 69 IEPFFLVGYSMGGRIALYYALQYPERVQGLILESGSPG 106 (251)
T ss_pred CCeEEEEEeccHHHHHHHHHHhCchheeeeEEecCCCC
Confidence 57999999999999999999999999999988776543
No 91
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=98.41 E-value=2.5e-06 Score=86.49 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=75.0
Q ss_pred CCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcC
Q 044808 468 DGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSN 547 (623)
Q Consensus 468 ~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 547 (623)
++..|.||++||..+.. ..|. .....|.++||.|+.++.||.|.... .......++|..+.+.-++++-
T Consensus 15 ~~~~p~vvliHG~~~~~--~~w~--~~~~~L~~~g~~vi~~dl~g~G~s~~-------~~~~~~~~~~~~~~l~~~i~~l 83 (273)
T PLN02211 15 NRQPPHFVLIHGISGGS--WCWY--KIRCLMENSGYKVTCIDLKSAGIDQS-------DADSVTTFDEYNKPLIDFLSSL 83 (273)
T ss_pred cCCCCeEEEECCCCCCc--CcHH--HHHHHHHhCCCEEEEecccCCCCCCC-------CcccCCCHHHHHHHHHHHHHhc
Confidence 35568999999965433 2455 55566777899999999998653210 0112256666665555444431
Q ss_pred CCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCc
Q 044808 548 YCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPS 586 (623)
Q Consensus 548 ~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 586 (623)
. ..+++.+.|+|+||.++..++.++|++++..|...+.
T Consensus 84 ~-~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~~~~~ 121 (273)
T PLN02211 84 P-ENEKVILVGHSAGGLSVTQAIHRFPKKICLAVYVAAT 121 (273)
T ss_pred C-CCCCEEEEEECchHHHHHHHHHhChhheeEEEEeccc
Confidence 1 2379999999999999998888899999988887654
No 92
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=98.41 E-value=2.2e-06 Score=88.54 Aligned_cols=122 Identities=20% Similarity=0.120 Sum_probs=80.5
Q ss_pred EEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcc
Q 044808 445 RAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENG 524 (623)
Q Consensus 445 ~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~ 524 (623)
++...||.+|.... . + .+ +.|.||++||+++.... . .....+...+|.|+.+|.||-|....
T Consensus 8 ~~~~~~~~~l~y~~-~--g--~~--~~~~lvllHG~~~~~~~---~--~~~~~~~~~~~~vi~~D~~G~G~S~~------ 69 (306)
T TIGR01249 8 YLNVSDNHQLYYEQ-S--G--NP--DGKPVVFLHGGPGSGTD---P--GCRRFFDPETYRIVLFDQRGCGKSTP------ 69 (306)
T ss_pred eEEcCCCcEEEEEE-C--c--CC--CCCEEEEECCCCCCCCC---H--HHHhccCccCCEEEEECCCCCCCCCC------
Confidence 45566888876532 1 1 11 23557889998775432 1 11223445799999999999553321
Q ss_pred cccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCc
Q 044808 525 KLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPS 586 (623)
Q Consensus 525 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 586 (623)
..........|+.+.+..++++- ..+++.++|+|+||++++.++.++|++++++|...++
T Consensus 70 ~~~~~~~~~~~~~~dl~~l~~~l--~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl~~~~ 129 (306)
T TIGR01249 70 HACLEENTTWDLVADIEKLREKL--GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVLRGIF 129 (306)
T ss_pred CCCcccCCHHHHHHHHHHHHHHc--CCCCEEEEEECHHHHHHHHHHHHChHhhhhheeeccc
Confidence 01111245667777777776652 3468999999999999999999999998877776544
No 93
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=98.39 E-value=1.2e-06 Score=86.91 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=72.5
Q ss_pred CCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCC
Q 044808 469 GSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNY 548 (623)
Q Consensus 469 ~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 548 (623)
.+.|+||++||..+... .|. .....+.+||.|+.+|+||.|...... ...-.++|...-+..++++
T Consensus 11 ~~~~~iv~lhG~~~~~~--~~~---~~~~~l~~~~~vi~~D~~G~G~S~~~~-------~~~~~~~~~~~~~~~~i~~-- 76 (257)
T TIGR03611 11 ADAPVVVLSSGLGGSGS--YWA---PQLDVLTQRFHVVTYDHRGTGRSPGEL-------PPGYSIAHMADDVLQLLDA-- 76 (257)
T ss_pred CCCCEEEEEcCCCcchh--HHH---HHHHHHHhccEEEEEcCCCCCCCCCCC-------cccCCHHHHHHHHHHHHHH--
Confidence 34688999999654331 232 233455679999999999977643221 1112455555444444433
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccc
Q 044808 549 CSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVD 588 (623)
Q Consensus 549 ~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 588 (623)
.+.+++.++|+|+||+++..++.++|+.++++|...|+.+
T Consensus 77 ~~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i~~~~~~~ 116 (257)
T TIGR03611 77 LNIERFHFVGHALGGLIGLQLALRYPERLLSLVLINAWSR 116 (257)
T ss_pred hCCCcEEEEEechhHHHHHHHHHHChHHhHHheeecCCCC
Confidence 3457899999999999999999899998898887776543
No 94
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=98.35 E-value=6.7e-07 Score=94.32 Aligned_cols=129 Identities=19% Similarity=0.189 Sum_probs=70.9
Q ss_pred CCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcC------Chh---HH
Q 044808 451 GEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEK------GKQ---WH 521 (623)
Q Consensus 451 G~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~------G~~---~~ 521 (623)
..++|+. ....+ .+.+++|+||+-||-.+.. ..++ ..+..|+++||+|+.++.|-+..- ... ..
T Consensus 83 ~~~~pa~--~~a~~-~~~~~~PvvIFSHGlgg~R--~~yS--~~~~eLAS~GyVV~aieHrDgSa~~t~~~~~~~~~~~~ 155 (379)
T PF03403_consen 83 SIRIPAY--WNAPL-SPPGKFPVVIFSHGLGGSR--TSYS--AICGELASHGYVVAAIEHRDGSAPATYFMRDGSGAEVE 155 (379)
T ss_dssp T-EESSE--ET--B---SS-EEEEEEE--TT--T--TTTH--HHHHHHHHTT-EEEEE---SS-SSEEEE-SSHHHHHHT
T ss_pred hcccccc--cCccc-ccCCCCCEEEEeCCCCcch--hhHH--HHHHHHHhCCeEEEEeccCCCceeEEEeccCCCccccc
Confidence 4566653 22222 2347899999999965443 3467 788999999999999999965321 111 10
Q ss_pred -------HcccccCC----C-----------chHhHHHHHHHHHHH--c------------------CCCCCCcEEEEEe
Q 044808 522 -------ENGKLLNK----R-----------NTFTDFIACADYLIK--S------------------NYCSEDNLCIEGG 559 (623)
Q Consensus 522 -------~~~~~~~~----~-----------~~~~D~~~~~~~l~~--~------------------~~~d~~ri~i~G~ 559 (623)
+...-..+ . .-..|+..+++.|.+ . +-+|.+||+++|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GH 235 (379)
T PF03403_consen 156 PYVVEYLEEEWIPLRDFDPEEEFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGH 235 (379)
T ss_dssp ---------EEEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEE
T ss_pred cccccccccceeccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeec
Confidence 00000000 0 123567777777753 1 3467899999999
Q ss_pred ChHHHHHHHHHHhCCCeeeEEEecCCcc
Q 044808 560 SAGGMLIGAVLNMRPELFKVAVADVPSV 587 (623)
Q Consensus 560 S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 587 (623)
|+||-.++.++.+. ..|+|+|+.-|-.
T Consensus 236 SFGGATa~~~l~~d-~r~~~~I~LD~W~ 262 (379)
T PF03403_consen 236 SFGGATALQALRQD-TRFKAGILLDPWM 262 (379)
T ss_dssp THHHHHHHHHHHH--TT--EEEEES---
T ss_pred CchHHHHHHHHhhc-cCcceEEEeCCcc
Confidence 99999999988776 6799999886643
No 95
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=98.33 E-value=1.7e-06 Score=85.26 Aligned_cols=102 Identities=15% Similarity=0.097 Sum_probs=72.0
Q ss_pred CccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCC
Q 044808 470 SDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYC 549 (623)
Q Consensus 470 ~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 549 (623)
..|+||++||..... ..|. ... ..+.+||.|+.+|.||.|.... .....++.|+.+.+..+++.-
T Consensus 12 ~~~~li~~hg~~~~~--~~~~--~~~-~~l~~~~~v~~~d~~G~G~s~~--------~~~~~~~~~~~~~~~~~i~~~-- 76 (251)
T TIGR02427 12 GAPVLVFINSLGTDL--RMWD--PVL-PALTPDFRVLRYDKRGHGLSDA--------PEGPYSIEDLADDVLALLDHL-- 76 (251)
T ss_pred CCCeEEEEcCcccch--hhHH--HHH-HHhhcccEEEEecCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHHh--
Confidence 468999999843222 2343 333 3456899999999999765421 112346677776666666542
Q ss_pred CCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCc
Q 044808 550 SEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPS 586 (623)
Q Consensus 550 d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 586 (623)
+.+++.++|+|+||.++..++.++|+.++++|...+.
T Consensus 77 ~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li~~~~~ 113 (251)
T TIGR02427 77 GIERAVFCGLSLGGLIAQGLAARRPDRVRALVLSNTA 113 (251)
T ss_pred CCCceEEEEeCchHHHHHHHHHHCHHHhHHHhhccCc
Confidence 3468999999999999999998999998888876553
No 96
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.32 E-value=0.00056 Score=70.94 Aligned_cols=236 Identities=17% Similarity=0.118 Sum_probs=118.3
Q ss_pred EECCCCCEEEEEEe---------Cc-eEEEEECCCCCcccc-ccC-------ccc--eeEEecCCeEEEEEeCCCCCCeE
Q 044808 156 KVSPNNKLVAFREN---------CG-TVCVIDSETGAPAEK-PIQ-------GCL--EFEWAGDEAFLYTRRNAIAEPQV 215 (623)
Q Consensus 156 ~~SPDG~~lA~~~~---------~~-~l~v~dl~tg~~~~~-~i~-------~~~--~~~WspDg~l~y~~~d~~~~~~v 215 (623)
.+||||+.|..+.. .. .|.|+|++|++.+.+ .++ ... .++.+|||+++|+.+-.. ...|
T Consensus 52 ~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p-~~~V 130 (352)
T TIGR02658 52 VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP-SPAV 130 (352)
T ss_pred eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC-CCEE
Confidence 59999999888876 33 899999999998753 221 111 389999997777664221 1156
Q ss_pred EEEECCCCCcc-------cEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeEEE
Q 044808 216 WFHKLGEEQSK-------DTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDMFV 288 (623)
Q Consensus 216 ~~~~lgt~~~~-------d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~~~ 288 (623)
-..++.+...- -.++|...+..|. ..+.||+.+.+.....+....--...-.+. -..+..+. .+
T Consensus 131 ~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~---~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~-~~~v~~rP-----~~ 201 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDVPDCYHIFPTANDTFF---MHCRDGSLAKVGYGTKGNPKIKPTEVFHPE-DEYLINHP-----AY 201 (352)
T ss_pred EEEECCCCcEEEEEeCCCCcEEEEecCCccE---EEeecCceEEEEecCCCceEEeeeeeecCC-ccccccCC-----ce
Confidence 66777654210 0122221122222 235677766655433222110000000000 00111111 23
Q ss_pred Ee-eCCEEEEEeCCCCCCeEEEEEeCCCCCc---eee-EEcCCC---Cce---EeEEEE--eCCEEEEEEee-------C
Q 044808 289 SH-RGNQFFIRRSDGGFHSDVLTCPVDNTFE---TTV-LIPHRE---RVR---VEEVRL--FADHIAVYELE-------E 348 (623)
Q Consensus 289 ~~-dg~~ly~sn~~g~~~~~L~~~d~~~~~~---~~~-li~~~~---d~~---i~~~~~--~~~~Lv~~~~~-------~ 348 (623)
.+ +|..+|+|+.+ .|+.+|+.+... ..| +++..+ +.. ++.+.+ .++++|+.... .
T Consensus 202 ~~~dg~~~~vs~eG-----~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~ 276 (352)
T TIGR02658 202 SNKSGRLVWPTYTG-----KIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKT 276 (352)
T ss_pred EcCCCcEEEEecCC-----eEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccC
Confidence 45 55444447763 688888644321 223 222110 111 122444 45778875432 2
Q ss_pred CcceEEEEECCCCCCCcccccCCceeecCCCceEEEeeeccccCCcCCceEEEEeecCCCCCeEEEEECCCCcE
Q 044808 349 GLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCISRIHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTGIS 422 (623)
Q Consensus 349 g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~ 422 (623)
+..+++++|..+ ++.+ .++...... +....++|++-.++..+. ....+..+|..+++.
T Consensus 277 ~~~~V~ViD~~t-~kvi------~~i~vG~~~-------~~iavS~Dgkp~lyvtn~--~s~~VsViD~~t~k~ 334 (352)
T TIGR02658 277 ASRFLFVVDAKT-GKRL------RKIELGHEI-------DSINVSQDAKPLLYALST--GDKTLYIFDAETGKE 334 (352)
T ss_pred CCCEEEEEECCC-CeEE------EEEeCCCce-------eeEEECCCCCeEEEEeCC--CCCcEEEEECcCCeE
Confidence 335899999875 4432 334333222 223446677733343322 245688999888763
No 97
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.31 E-value=0.0001 Score=74.64 Aligned_cols=237 Identities=11% Similarity=0.096 Sum_probs=129.2
Q ss_pred EeeeEECCCCCEEEEEEeCc--eEEEEECCCCCccccccC----ccceeEEecCCeEEEEEe-CCCCCCeEEEEECCCCC
Q 044808 152 ITAFKVSPNNKLVAFRENCG--TVCVIDSETGAPAEKPIQ----GCLEFEWAGDEAFLYTRR-NAIAEPQVWFHKLGEEQ 224 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~--~l~v~dl~tg~~~~~~i~----~~~~~~WspDg~l~y~~~-d~~~~~~v~~~~lgt~~ 224 (623)
+-..++|||||+||-+.... -||.....+.-.+..++. .+..+.||||++.+.+.. ++ .++++++.|+.
T Consensus 227 VWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e----~~~lwDv~tgd 302 (519)
T KOG0293|consen 227 VWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE----VLSLWDVDTGD 302 (519)
T ss_pred EEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH----heeeccCCcch
Confidence 45679999999999998776 344333332211111232 233499999995554442 32 47888988874
Q ss_pred cccEEEEeecCCcee-EEEEEcCCCcEEEEEeecceeeEEEEEECCCCC--ceeecCCCccceeEEEEeeCCEEEE-EeC
Q 044808 225 SKDTCLYRTREDLFD-LTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE--TLWFLPPWHLGIDMFVSHRGNQFFI-RRS 300 (623)
Q Consensus 225 ~~d~lv~~~~~~~~~-~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~--~~~~l~~~~~~~~~~~~~dg~~ly~-sn~ 300 (623)
. ...|... -++. .++.|-|||..++..+. ...++..++++.. .|+-+... .-....+++||+.++. +..
T Consensus 303 ~--~~~y~~~-~~~S~~sc~W~pDg~~~V~Gs~---dr~i~~wdlDgn~~~~W~gvr~~-~v~dlait~Dgk~vl~v~~d 375 (519)
T KOG0293|consen 303 L--RHLYPSG-LGFSVSSCAWCPDGFRFVTGSP---DRTIIMWDLDGNILGNWEGVRDP-KVHDLAITYDGKYVLLVTVD 375 (519)
T ss_pred h--hhhcccC-cCCCcceeEEccCCceeEecCC---CCcEEEecCCcchhhcccccccc-eeEEEEEcCCCcEEEEEecc
Confidence 3 4456543 2343 46789999999665433 3577888887643 23222110 0112357789999888 543
Q ss_pred CCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCC-EEEEEEeeCCcceEEEEECCCCCCCcccccCCceeecCCC
Q 044808 301 DGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFAD-HIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKS 379 (623)
Q Consensus 301 ~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~-~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~ 379 (623)
. ++..++.++..... ++.++. .+..+.+.++ +++++...+ .+++++|+.. .+.+.+. ..--..
T Consensus 376 ~-----~i~l~~~e~~~dr~-lise~~--~its~~iS~d~k~~LvnL~~--qei~LWDl~e-~~lv~kY-----~Ghkq~ 439 (519)
T KOG0293|consen 376 K-----KIRLYNREARVDRG-LISEEQ--PITSFSISKDGKLALVNLQD--QEIHLWDLEE-NKLVRKY-----FGHKQG 439 (519)
T ss_pred c-----ceeeechhhhhhhc-cccccC--ceeEEEEcCCCcEEEEEccc--CeeEEeecch-hhHHHHh-----hccccc
Confidence 2 34444544432211 454432 4678888764 455555443 3588888873 2211111 000011
Q ss_pred ceEEEeeeccccCCcCCceEEEEeecCCCCCeEEEEECCCCcEE
Q 044808 380 ELCISRIHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTGISV 423 (623)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~ 423 (623)
.+.|. + .+......++.+ -..-..+|.++..+|++.
T Consensus 440 ~fiIr---S--CFgg~~~~fiaS---GSED~kvyIWhr~sgkll 475 (519)
T KOG0293|consen 440 HFIIR---S--CFGGGNDKFIAS---GSEDSKVYIWHRISGKLL 475 (519)
T ss_pred ceEEE---e--ccCCCCcceEEe---cCCCceEEEEEccCCcee
Confidence 23441 1 111122344443 344568999999888853
No 98
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=98.30 E-value=0.00022 Score=72.49 Aligned_cols=193 Identities=15% Similarity=0.121 Sum_probs=107.2
Q ss_pred eeeEECCCCCEEEEEEeC-ceEEEEECCCCCccccccC-c--cceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcccE
Q 044808 153 TAFKVSPNNKLVAFRENC-GTVCVIDSETGAPAEKPIQ-G--CLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSKDT 228 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~-~~l~v~dl~tg~~~~~~i~-~--~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~d~ 228 (623)
..+.++|||+.++.+... +.|+++|+.+++.+. .++ . ..+++|+|||.++++.... ...++.++..+.....
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~-~~~~~~~~~~~~~~~dg~~l~~~~~~--~~~~~~~d~~~~~~~~- 151 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLA-EIPVGVEPEGMAVSPDGKIVVNTSET--TNMAHFIDTKTYEIVD- 151 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe-EeeCCCCcceEEECCCCCEEEEEecC--CCeEEEEeCCCCeEEE-
Confidence 357899999988766433 389999999877553 222 1 2359999999544443321 1135556665542111
Q ss_pred EEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCC-----ccc---eeEEEEeeCCEEEEEeC
Q 044808 229 CLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPW-----HLG---IDMFVSHRGNQFFIRRS 300 (623)
Q Consensus 229 lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~-----~~~---~~~~~~~dg~~ly~sn~ 300 (623)
.+..... ...+.+++||++|++... ....++++|+.+++..+.+... ... ....++++++.+|++..
T Consensus 152 ~~~~~~~---~~~~~~s~dg~~l~~~~~--~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~ 226 (300)
T TIGR03866 152 NVLVDQR---PRFAEFTADGKELWVSSE--IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG 226 (300)
T ss_pred EEEcCCC---ccEEEECCCCCEEEEEcC--CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcC
Confidence 1111111 234678999999876432 2356888999876511111100 011 12346788888777332
Q ss_pred CCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEE--eCCEEEEEEeeCCcceEEEEECCCCCC
Q 044808 301 DGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRL--FADHIAVYELEEGLPKITTYCLPPVGE 363 (623)
Q Consensus 301 ~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~--~~~~Lv~~~~~~g~~~l~v~~l~~~g~ 363 (623)
. +..|..+|+.+..... .+.... .+..+.+ .+++|++....++ .|.++++.+ ++
T Consensus 227 ~---~~~i~v~d~~~~~~~~-~~~~~~--~~~~~~~~~~g~~l~~~~~~~~--~i~v~d~~~-~~ 282 (300)
T TIGR03866 227 P---ANRVAVVDAKTYEVLD-YLLVGQ--RVWQLAFTPDEKYLLTTNGVSN--DVSVIDVAA-LK 282 (300)
T ss_pred C---CCeEEEEECCCCcEEE-EEEeCC--CcceEEECCCCCEEEEEcCCCC--eEEEEECCC-Cc
Confidence 2 1357777876554322 122221 2334444 4566665543343 589999885 44
No 99
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=98.30 E-value=3.3e-06 Score=88.88 Aligned_cols=88 Identities=19% Similarity=0.227 Sum_probs=67.6
Q ss_pred hhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCch--HhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHH
Q 044808 493 ASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNT--FTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVL 570 (623)
Q Consensus 493 ~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~--~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~ 570 (623)
.....|+++||.|..+|.||.|.... .....+ .+|+.++++++.++. ..+++.+.|+|+||.+++.++
T Consensus 85 ~~~~~L~~~G~~V~~~D~~g~g~s~~--------~~~~~d~~~~~~~~~v~~l~~~~--~~~~i~lvGhS~GG~i~~~~~ 154 (350)
T TIGR01836 85 SLVRGLLERGQDVYLIDWGYPDRADR--------YLTLDDYINGYIDKCVDYICRTS--KLDQISLLGICQGGTFSLCYA 154 (350)
T ss_pred hHHHHHHHCCCeEEEEeCCCCCHHHh--------cCCHHHHHHHHHHHHHHHHHHHh--CCCcccEEEECHHHHHHHHHH
Confidence 45677889999999999998653211 111122 245778899998763 346999999999999999988
Q ss_pred HhCCCeeeEEEecCCccchh
Q 044808 571 NMRPELFKVAVADVPSVDVL 590 (623)
Q Consensus 571 ~~~p~~f~a~v~~~~~~d~~ 590 (623)
..+|+.++++|+.+|.+|+.
T Consensus 155 ~~~~~~v~~lv~~~~p~~~~ 174 (350)
T TIGR01836 155 ALYPDKIKNLVTMVTPVDFE 174 (350)
T ss_pred HhCchheeeEEEeccccccC
Confidence 88999999999999988753
No 100
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.29 E-value=3.7e-06 Score=80.84 Aligned_cols=135 Identities=19% Similarity=0.205 Sum_probs=94.5
Q ss_pred CCCCCceEeeeEEECC----CCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEe
Q 044808 434 FDESNYVTESKRAYAS----DGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAH 509 (623)
Q Consensus 434 ~~~~~~~~~~~~~~s~----dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~ 509 (623)
|....|.++.+.+.+. ---..|..|+.|.. .+.+|+|++.||-. .. ...|+ ...+.+++.||+|+.|+
T Consensus 9 F~~G~~~~~~~~Vd~s~~~~~spPkpLlI~tP~~----~G~yPVilF~HG~~-l~-ns~Ys--~lL~HIASHGfIVVAPQ 80 (307)
T PF07224_consen 9 FETGKYKTKLFNVDTSSNSSPSPPKPLLIVTPSE----AGTYPVILFLHGFN-LY-NSFYS--QLLAHIASHGFIVVAPQ 80 (307)
T ss_pred eecCCceeEEEeecCCCCCCCCCCCCeEEecCCc----CCCccEEEEeechh-hh-hHHHH--HHHHHHhhcCeEEEech
Confidence 4444555555555211 12456788777765 48899999999943 22 22344 55678889999999999
Q ss_pred ccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHc--------CCCCCCcEEEEEeChHHHHHHHHHHhC-CC-eeeE
Q 044808 510 VRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKS--------NYCSEDNLCIEGGSAGGMLIGAVLNMR-PE-LFKV 579 (623)
Q Consensus 510 ~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~--------~~~d~~ri~i~G~S~GG~l~~~~~~~~-p~-~f~a 579 (623)
.-... ...+..++++..+.++||-+. --.+-+++++.|+|-||-.+-+++..+ .+ .|.|
T Consensus 81 l~~~~-----------~p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a~~lkfsa 149 (307)
T PF07224_consen 81 LYTLF-----------PPDGQDEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYATSLKFSA 149 (307)
T ss_pred hhccc-----------CCCchHHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhcccccCchhh
Confidence 76432 134567889999999999752 126779999999999999998777655 33 3788
Q ss_pred EEecCCcc
Q 044808 580 AVADVPSV 587 (623)
Q Consensus 580 ~v~~~~~~ 587 (623)
.|-.-||.
T Consensus 150 LIGiDPV~ 157 (307)
T PF07224_consen 150 LIGIDPVA 157 (307)
T ss_pred eecccccC
Confidence 88776654
No 101
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.28 E-value=4.2e-06 Score=76.85 Aligned_cols=133 Identities=17% Similarity=0.179 Sum_probs=86.7
Q ss_pred EeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCC--CCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCCh
Q 044808 441 TESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGS--YGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGK 518 (623)
Q Consensus 441 ~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg--~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~ 518 (623)
+..+.+++.-|. +.+. .-|.+. ...|+.|..|-= ++.++.+.-- ......|.++||+++.+|+||=|..+
T Consensus 4 ~~~v~i~Gp~G~-le~~-~~~~~~----~~~~iAli~HPHPl~gGtm~nkvv-~~la~~l~~~G~atlRfNfRgVG~S~- 75 (210)
T COG2945 4 MPTVIINGPAGR-LEGR-YEPAKT----PAAPIALICHPHPLFGGTMNNKVV-QTLARALVKRGFATLRFNFRGVGRSQ- 75 (210)
T ss_pred CCcEEecCCccc-ceec-cCCCCC----CCCceEEecCCCccccCccCCHHH-HHHHHHHHhCCceEEeeccccccccc-
Confidence 345556665552 4443 233322 345666665543 3444432211 02345788899999999999966543
Q ss_pred hHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccc
Q 044808 519 QWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVD 588 (623)
Q Consensus 519 ~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 588 (623)
|..+.|..+.+|..+|++||.++.--. .-..+.|.|+|++.++.++.++|+. ...|+..|..+
T Consensus 76 -----G~fD~GiGE~~Da~aaldW~~~~hp~s-~~~~l~GfSFGa~Ia~~la~r~~e~-~~~is~~p~~~ 138 (210)
T COG2945 76 -----GEFDNGIGELEDAAAALDWLQARHPDS-ASCWLAGFSFGAYIAMQLAMRRPEI-LVFISILPPIN 138 (210)
T ss_pred -----CcccCCcchHHHHHHHHHHHHhhCCCc-hhhhhcccchHHHHHHHHHHhcccc-cceeeccCCCC
Confidence 344678899999999999999864211 2247899999999999998888774 45556666665
No 102
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=98.28 E-value=3.6e-06 Score=87.83 Aligned_cols=138 Identities=15% Similarity=0.043 Sum_probs=81.5
Q ss_pred EEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCC---------------------CCCCc-hhhhHHHHHCC
Q 044808 445 RAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPS---------------------SYSNS-IASRLTILDRG 502 (623)
Q Consensus 445 ~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~---------------------~~~~~-~~~~~~~~~~G 502 (623)
++++.||..|......|+ .+..+|+.+||--+.... ..|.+ ......|.++|
T Consensus 1 ~~~~~~g~~l~~~~~~~~------~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~G 74 (332)
T TIGR01607 1 SFRNKDGLLLKTYSWIVK------NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKNG 74 (332)
T ss_pred CccCCCCCeEEEeeeecc------CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHCC
Confidence 356789999988754443 234699999993222210 01110 02356788999
Q ss_pred cEEEEEeccCCCcC-ChhHHHcccccCCCchHhHHHHHHHHHHHc------------------CCCCCCcEEEEEeChHH
Q 044808 503 IIFAIAHVRGGDEK-GKQWHENGKLLNKRNTFTDFIACADYLIKS------------------NYCSEDNLCIEGGSAGG 563 (623)
Q Consensus 503 ~~v~~~~~RG~~~~-G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~------------------~~~d~~ri~i~G~S~GG 563 (623)
|.|+..|.||-|.- |.... .+.-..-..-++|+.+.++.+.++ .+-....+.++|+|.||
T Consensus 75 ~~V~~~D~rGHG~S~~~~~~-~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg 153 (332)
T TIGR01607 75 YSVYGLDLQGHGESDGLQNL-RGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGG 153 (332)
T ss_pred CcEEEecccccCCCcccccc-ccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCcc
Confidence 99999999996643 22110 010001112234555555554431 11112469999999999
Q ss_pred HHHHHHHHhCCC--------eeeEEEecCCccch
Q 044808 564 MLIGAVLNMRPE--------LFKVAVADVPSVDV 589 (623)
Q Consensus 564 ~l~~~~~~~~p~--------~f~a~v~~~~~~d~ 589 (623)
.++...+...++ .++++|+..|.+.+
T Consensus 154 ~i~~~~~~~~~~~~~~~~~~~i~g~i~~s~~~~i 187 (332)
T TIGR01607 154 NIALRLLELLGKSNENNDKLNIKGCISLSGMISI 187 (332)
T ss_pred HHHHHHHHHhccccccccccccceEEEeccceEE
Confidence 999887755432 57888888887643
No 103
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=98.26 E-value=7.4e-06 Score=87.77 Aligned_cols=125 Identities=13% Similarity=0.088 Sum_probs=75.5
Q ss_pred eEEECCCCC--eEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHH
Q 044808 444 KRAYASDGE--EIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWH 521 (623)
Q Consensus 444 ~~~~s~dG~--~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~ 521 (623)
-++.+.||. .|... ..++ ++..|.||++||..+.. ..|. .....|. ++|.|+.+|.||.|...+.-.
T Consensus 82 ~~~~~~~~~~~~~~~~-~~~~-----~~~~p~vvllHG~~~~~--~~~~--~~~~~L~-~~~~vi~~D~rG~G~S~~~~~ 150 (402)
T PLN02894 82 RWFRSASNEPRFINTV-TFDS-----KEDAPTLVMVHGYGASQ--GFFF--RNFDALA-SRFRVIAIDQLGWGGSSRPDF 150 (402)
T ss_pred cceecccCcCCeEEEE-EecC-----CCCCCEEEEECCCCcch--hHHH--HHHHHHH-hCCEEEEECCCCCCCCCCCCc
Confidence 344455664 45432 3332 23468999999964432 1233 3344444 579999999999776432100
Q ss_pred HcccccCCCchH-hHHHHH-HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCc
Q 044808 522 ENGKLLNKRNTF-TDFIAC-ADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPS 586 (623)
Q Consensus 522 ~~~~~~~~~~~~-~D~~~~-~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 586 (623)
........ +.+++. .+|+.+. +.+++.++|+|+||++++.++.++|+.++++|...|.
T Consensus 151 ----~~~~~~~~~~~~~~~i~~~~~~l---~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl~~p~ 210 (402)
T PLN02894 151 ----TCKSTEETEAWFIDSFEEWRKAK---NLSNFILLGHSFGGYVAAKYALKHPEHVQHLILVGPA 210 (402)
T ss_pred ----ccccHHHHHHHHHHHHHHHHHHc---CCCCeEEEEECHHHHHHHHHHHhCchhhcEEEEECCc
Confidence 00000111 123332 3444433 4468999999999999999999999999988877653
No 104
>PRK03204 haloalkane dehalogenase; Provisional
Probab=98.26 E-value=8.5e-06 Score=83.25 Aligned_cols=102 Identities=13% Similarity=0.019 Sum_probs=72.8
Q ss_pred ccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCC
Q 044808 471 DPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCS 550 (623)
Q Consensus 471 ~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 550 (623)
.|.||++||.+... ..|. ... ..+.++|.|+.+|.||.|..+.. ......++|+.+.+..++++- +
T Consensus 34 ~~~iv~lHG~~~~~--~~~~--~~~-~~l~~~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~~~~~~~~~--~ 99 (286)
T PRK03204 34 GPPILLCHGNPTWS--FLYR--DII-VALRDRFRCVAPDYLGFGLSERP-------SGFGYQIDEHARVIGEFVDHL--G 99 (286)
T ss_pred CCEEEEECCCCccH--HHHH--HHH-HHHhCCcEEEEECCCCCCCCCCC-------CccccCHHHHHHHHHHHHHHh--C
Confidence 47889999975322 1233 222 34456899999999997754321 011245788888888888762 3
Q ss_pred CCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCc
Q 044808 551 EDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPS 586 (623)
Q Consensus 551 ~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 586 (623)
.+++.+.|+|+||.++..++..+|++++++|...+.
T Consensus 100 ~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl~~~~ 135 (286)
T PRK03204 100 LDRYLSMGQDWGGPISMAVAVERADRVRGVVLGNTW 135 (286)
T ss_pred CCCEEEEEECccHHHHHHHHHhChhheeEEEEECcc
Confidence 468999999999999998888899999998865543
No 105
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=98.25 E-value=0.0013 Score=68.49 Aligned_cols=203 Identities=12% Similarity=0.048 Sum_probs=101.6
Q ss_pred eeeEECCCCCEEEEEEeCc-eEEEEECC-CCCccc-ccc--Ccc-ceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcc
Q 044808 153 TAFKVSPNNKLVAFRENCG-TVCVIDSE-TGAPAE-KPI--QGC-LEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSK 226 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~~-~l~v~dl~-tg~~~~-~~i--~~~-~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~ 226 (623)
..+.+||||++|+.+.... .|.++++. +|+... ..+ .+. ..++++|||+++|+..... ..|..+++.+....
T Consensus 38 ~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~--~~v~v~~~~~~g~~ 115 (330)
T PRK11028 38 QPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNA--NCVSVSPLDKDGIP 115 (330)
T ss_pred ccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCC--CeEEEEEECCCCCC
Confidence 3568999999987764433 78888876 454321 122 211 2489999997777664321 25666666432110
Q ss_pred cEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceee-----c-CCCccce-eEEEEeeCCEEEEEe
Q 044808 227 DTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWF-----L-PPWHLGI-DMFVSHRGNQFFIRR 299 (623)
Q Consensus 227 d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~-----l-~~~~~~~-~~~~~~dg~~ly~sn 299 (623)
...+..-........+.++|||+++++... ....|+++|+++...+.. + .+...+. ...++++|+.+|+++
T Consensus 116 ~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~--~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~ 193 (330)
T PRK11028 116 VAPIQIIEGLEGCHSANIDPDNRTLWVPCL--KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVN 193 (330)
T ss_pred CCceeeccCCCcccEeEeCCCCCEEEEeeC--CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEe
Confidence 111111011111234568999999886433 446788888865221211 0 1111111 235789888888855
Q ss_pred CCCCCCeEEEEEeCCCCCceee----EEcCCC--CceEeEEE--EeCCEEEEEEeeCCcceEEEEECCCCC
Q 044808 300 SDGGFHSDVLTCPVDNTFETTV----LIPHRE--RVRVEEVR--LFADHIAVYELEEGLPKITTYCLPPVG 362 (623)
Q Consensus 300 ~~g~~~~~L~~~d~~~~~~~~~----li~~~~--d~~i~~~~--~~~~~Lv~~~~~~g~~~l~v~~l~~~g 362 (623)
.. .....++.++..++..... .++... ......+. +.+++||+..+ +...|.+++++.++
T Consensus 194 ~~-~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~--~~~~I~v~~i~~~~ 261 (330)
T PRK11028 194 EL-NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR--TASLISVFSVSEDG 261 (330)
T ss_pred cC-CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC--CCCeEEEEEEeCCC
Confidence 43 2233444443222221111 122210 00111233 45567777643 33467788776433
No 106
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.25 E-value=6.6e-05 Score=71.85 Aligned_cols=136 Identities=13% Similarity=0.153 Sum_probs=83.7
Q ss_pred eeEECCCCCEEEEEEeCc------------eEEEEECCCCCccccccCc---cceeEEecCC-eEEEEEeCCCCCC-eEE
Q 044808 154 AFKVSPNNKLVAFRENCG------------TVCVIDSETGAPAEKPIQG---CLEFEWAGDE-AFLYTRRNAIAEP-QVW 216 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~------------~l~v~dl~tg~~~~~~i~~---~~~~~WspDg-~l~y~~~d~~~~~-~v~ 216 (623)
.+.|+|+|++|++..+.. .|+.++..........+.. +..++|+|+| +|+..... .| ++.
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~---~~~~v~ 86 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS---MPAKVT 86 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc---CCcccE
Confidence 468999999999987721 7888877765443223332 4469999999 77766432 23 566
Q ss_pred EEECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeEEEEeeCCEEE
Q 044808 217 FHKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDMFVSHRGNQFF 296 (623)
Q Consensus 217 ~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~~~~~dg~~ly 296 (623)
++++.. +...-+.. . ..-.+.|||+|++|++.........|.+.|..+.+ .........-....|+|+|..|+
T Consensus 87 lyd~~~---~~i~~~~~--~-~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~-~i~~~~~~~~t~~~WsPdGr~~~ 159 (194)
T PF08662_consen 87 LYDVKG---KKIFSFGT--Q-PRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKK-KISTFEHSDATDVEWSPDGRYLA 159 (194)
T ss_pred EEcCcc---cEeEeecC--C-CceEEEECCCCCEEEEEEccCCCcEEEEEECCCCE-EeeccccCcEEEEEEcCCCCEEE
Confidence 666642 12222321 1 12247899999999886543333568888888643 21112222222346999999888
Q ss_pred E-Ee
Q 044808 297 I-RR 299 (623)
Q Consensus 297 ~-sn 299 (623)
. +.
T Consensus 160 ta~t 163 (194)
T PF08662_consen 160 TATT 163 (194)
T ss_pred EEEe
Confidence 7 54
No 107
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.25 E-value=0.00016 Score=74.89 Aligned_cols=190 Identities=13% Similarity=0.159 Sum_probs=102.3
Q ss_pred eeEECCCCCEEEEEE-eCc-eEEEEECCCCCcccc-ccCccce-eEE--------ecCCeEEEEEeCCCCCCeEEEEECC
Q 044808 154 AFKVSPNNKLVAFRE-NCG-TVCVIDSETGAPAEK-PIQGCLE-FEW--------AGDEAFLYTRRNAIAEPQVWFHKLG 221 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~-~~~-~l~v~dl~tg~~~~~-~i~~~~~-~~W--------spDg~l~y~~~d~~~~~~v~~~~lg 221 (623)
.+.+|||||+|.... +.. .+-|+|+++++++.+ .+++|.. +.+ ..||++++...+..+. +..
T Consensus 109 ~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~--~~~---- 182 (352)
T TIGR02658 109 MTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGN--PKI---- 182 (352)
T ss_pred eEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCc--eEE----
Confidence 689999999987664 423 899999999998863 4455543 444 3444433333333221 111
Q ss_pred CCCcccEEEEee-cCCceeEEEEEcC-CCcEEEEEeecceeeEEEEEECCCCC-----ceeecCCC-------cccee-E
Q 044808 222 EEQSKDTCLYRT-REDLFDLTLEASE-SKKFLFVKSKTKVTGFVYYFDVSRPE-----TLWFLPPW-------HLGID-M 286 (623)
Q Consensus 222 t~~~~d~lv~~~-~~~~~~~~~~~S~-Dg~~l~i~s~~~~~s~l~~~dl~~~~-----~~~~l~~~-------~~~~~-~ 286 (623)
....+|.. .++-| ..+.+++ ||++++++.. ..|+.+|+++.. .+..+... ..+.+ .
T Consensus 183 ----~~~~vf~~~~~~v~-~rP~~~~~dg~~~~vs~e----G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i 253 (352)
T TIGR02658 183 ----KPTEVFHPEDEYLI-NHPAYSNKSGRLVWPTYT----GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV 253 (352)
T ss_pred ----eeeeeecCCccccc-cCCceEcCCCcEEEEecC----CeEEEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence 11123321 11111 1112244 8988776433 689999976543 12222111 11212 3
Q ss_pred EEEeeCCEEEE-EeCCC-----CCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeC--CEEEEEEeeCCcceEEEEEC
Q 044808 287 FVSHRGNQFFI-RRSDG-----GFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFA--DHIAVYELEEGLPKITTYCL 358 (623)
Q Consensus 287 ~~~~dg~~ly~-sn~~g-----~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~--~~Lv~~~~~~g~~~l~v~~l 358 (623)
.+.++++++|+ .+... .+-..|..+|.++.+...- ++-.. ...++.+.. +.+++..+. ....|.++|.
T Consensus 254 a~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~-i~vG~--~~~~iavS~Dgkp~lyvtn~-~s~~VsViD~ 329 (352)
T TIGR02658 254 AYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK-IELGH--EIDSINVSQDAKPLLYALST-GDKTLYIFDA 329 (352)
T ss_pred EEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEE-EeCCC--ceeeEEECCCCCeEEEEeCC-CCCcEEEEEC
Confidence 56788999999 64321 1224899999887654222 22221 244566554 424444432 2334889998
Q ss_pred CCCCC
Q 044808 359 PPVGE 363 (623)
Q Consensus 359 ~~~g~ 363 (623)
.+ ++
T Consensus 330 ~t-~k 333 (352)
T TIGR02658 330 ET-GK 333 (352)
T ss_pred cC-Ce
Confidence 75 44
No 108
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.24 E-value=0.00035 Score=73.35 Aligned_cols=197 Identities=14% Similarity=0.171 Sum_probs=105.6
Q ss_pred eeEECCCCCEEEEEEeCc-eEEEEECCC-CCcccc--cc--------------CccceeEEecCCeEEEEEeCCCCCCeE
Q 044808 154 AFKVSPNNKLVAFRENCG-TVCVIDSET-GAPAEK--PI--------------QGCLEFEWAGDEAFLYTRRNAIAEPQV 215 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~-~l~v~dl~t-g~~~~~--~i--------------~~~~~~~WspDg~l~y~~~d~~~~~~v 215 (623)
.+.++|||++|..+...+ .+.++++.. |..... .+ +..-.+.++|||+++|+..-. ...|
T Consensus 91 ~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG--~D~v 168 (345)
T PF10282_consen 91 HIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG--ADRV 168 (345)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT--TTEE
T ss_pred EEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC--CCEE
Confidence 468999999998887655 888888876 443221 11 111248999999766766422 2267
Q ss_pred EEEECCCCC--cccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECC--CCCceee-----cCCC-c----
Q 044808 216 WFHKLGEEQ--SKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVS--RPETLWF-----LPPW-H---- 281 (623)
Q Consensus 216 ~~~~lgt~~--~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~--~~~~~~~-----l~~~-~---- 281 (623)
+.+++.... ......+.-+...---.+.++|||+++++... ..+.|.++++. ++. ++. ..+. .
T Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e--~s~~v~v~~~~~~~g~-~~~~~~~~~~~~~~~~~~ 245 (345)
T PF10282_consen 169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE--LSNTVSVFDYDPSDGS-LTEIQTISTLPEGFTGEN 245 (345)
T ss_dssp EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET--TTTEEEEEEEETTTTE-EEEEEEEESCETTSCSSS
T ss_pred EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC--CCCcEEEEeecccCCc-eeEEEEeeeccccccccC
Confidence 777776543 11111111111111224678999999887543 34555555554 443 221 1211 1
Q ss_pred cceeEEEEeeCCEEEEEeCCCCCCeEEEEEeCCCCCceee-EEcCCCCceEeEEEE--eCCEEEEEEeeCCcceEEEEEC
Q 044808 282 LGIDMFVSHRGNQFFIRRSDGGFHSDVLTCPVDNTFETTV-LIPHRERVRVEEVRL--FADHIAVYELEEGLPKITTYCL 358 (623)
Q Consensus 282 ~~~~~~~~~dg~~ly~sn~~g~~~~~L~~~d~~~~~~~~~-li~~~~d~~i~~~~~--~~~~Lv~~~~~~g~~~l~v~~l 358 (623)
......++++|+.||++|+. .....++.+|.+++..... .++... ....++.+ .+++|++.....+. |.++++
T Consensus 246 ~~~~i~ispdg~~lyvsnr~-~~sI~vf~~d~~~g~l~~~~~~~~~G-~~Pr~~~~s~~g~~l~Va~~~s~~--v~vf~~ 321 (345)
T PF10282_consen 246 APAEIAISPDGRFLYVSNRG-SNSISVFDLDPATGTLTLVQTVPTGG-KFPRHFAFSPDGRYLYVANQDSNT--VSVFDI 321 (345)
T ss_dssp SEEEEEE-TTSSEEEEEECT-TTEEEEEEECTTTTTEEEEEEEEESS-SSEEEEEE-TTSSEEEEEETTTTE--EEEEEE
T ss_pred CceeEEEecCCCEEEEEecc-CCEEEEEEEecCCCceEEEEEEeCCC-CCccEEEEeCCCCEEEEEecCCCe--EEEEEE
Confidence 11234588999988888886 4455566665444433211 232211 12456666 56777776655544 555554
Q ss_pred C
Q 044808 359 P 359 (623)
Q Consensus 359 ~ 359 (623)
+
T Consensus 322 d 322 (345)
T PF10282_consen 322 D 322 (345)
T ss_dssp E
T ss_pred e
Confidence 3
No 109
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=98.23 E-value=1e-05 Score=82.97 Aligned_cols=108 Identities=16% Similarity=0.026 Sum_probs=75.1
Q ss_pred ccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChh-HHHcccccCCCchHhHHHHHHHHHHHcCCC
Q 044808 471 DPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQ-WHENGKLLNKRNTFTDFIACADYLIKSNYC 549 (623)
Q Consensus 471 ~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~-~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 549 (623)
.|.||++||.++.+. .|. .....|.++ |.|+.+|.||.|..... ... ........++|+.+.+.-++++--
T Consensus 29 ~~~vlllHG~~~~~~--~w~--~~~~~L~~~-~~vi~~DlpG~G~S~~~~~~~--~~~~~~~~~~~~a~~l~~~l~~l~- 100 (294)
T PLN02824 29 GPALVLVHGFGGNAD--HWR--KNTPVLAKS-HRVYAIDLLGYGYSDKPNPRS--APPNSFYTFETWGEQLNDFCSDVV- 100 (294)
T ss_pred CCeEEEECCCCCChh--HHH--HHHHHHHhC-CeEEEEcCCCCCCCCCCcccc--ccccccCCHHHHHHHHHHHHHHhc-
Confidence 378899999765442 455 555666655 69999999998754321 000 000123466777766665554322
Q ss_pred CCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCcc
Q 044808 550 SEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSV 587 (623)
Q Consensus 550 d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 587 (623)
.+++.+.|+|.||.+++.++..+|++++++|...|..
T Consensus 101 -~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lili~~~~ 137 (294)
T PLN02824 101 -GDPAFVICNSVGGVVGLQAAVDAPELVRGVMLINISL 137 (294)
T ss_pred -CCCeEEEEeCHHHHHHHHHHHhChhheeEEEEECCCc
Confidence 2789999999999999999999999999999887654
No 110
>PRK10673 acyl-CoA esterase; Provisional
Probab=98.22 E-value=5.5e-06 Score=82.71 Aligned_cols=99 Identities=16% Similarity=0.151 Sum_probs=66.9
Q ss_pred CCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCC
Q 044808 469 GSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNY 548 (623)
Q Consensus 469 ~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 548 (623)
...|.||++||.++... .|. ..... +..+|.|+.+|.||.|+.... . ...-....+|+.+.+++|
T Consensus 14 ~~~~~iv~lhG~~~~~~--~~~--~~~~~-l~~~~~vi~~D~~G~G~s~~~---~--~~~~~~~~~d~~~~l~~l----- 78 (255)
T PRK10673 14 HNNSPIVLVHGLFGSLD--NLG--VLARD-LVNDHDIIQVDMRNHGLSPRD---P--VMNYPAMAQDLLDTLDAL----- 78 (255)
T ss_pred CCCCCEEEECCCCCchh--HHH--HHHHH-HhhCCeEEEECCCCCCCCCCC---C--CCCHHHHHHHHHHHHHHc-----
Confidence 45688999999866542 343 33333 356899999999997654321 0 001112234444444443
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEec
Q 044808 549 CSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVAD 583 (623)
Q Consensus 549 ~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 583 (623)
..+++.++|+|.||.++..++.++|++++++|..
T Consensus 79 -~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvli 112 (255)
T PRK10673 79 -QIEKATFIGHSMGGKAVMALTALAPDRIDKLVAI 112 (255)
T ss_pred -CCCceEEEEECHHHHHHHHHHHhCHhhcceEEEE
Confidence 3468999999999999999999999999988874
No 111
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.21 E-value=0.0019 Score=64.99 Aligned_cols=255 Identities=14% Similarity=0.138 Sum_probs=133.1
Q ss_pred eeeEECCCCCEEEEEEeCc-----eEEEEECCCCCccc---cccCccc-e-eEEecCCeEEEEEeCCCCCCeEEEEECCC
Q 044808 153 TAFKVSPNNKLVAFRENCG-----TVCVIDSETGAPAE---KPIQGCL-E-FEWAGDEAFLYTRRNAIAEPQVWFHKLGE 222 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~~-----~l~v~dl~tg~~~~---~~i~~~~-~-~~WspDg~l~y~~~d~~~~~~v~~~~lgt 222 (623)
+.+.|+|++|+|--+...+ .-|-+|-.+|+..- ..+++.. . ++.++||+++|+..-..+ .|-+..+.+
T Consensus 43 tyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g--~v~v~p~~~ 120 (346)
T COG2706 43 TYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSG--SVSVYPLQA 120 (346)
T ss_pred ceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCc--eEEEEEccc
Confidence 4578999998876654442 55666666676432 1334433 2 888999988887653211 333344432
Q ss_pred CCc-c-cEEEEe--e--cCCc----eeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-c---eeecCCCccceeEEE
Q 044808 223 EQS-K-DTCLYR--T--REDL----FDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-T---LWFLPPWHLGIDMFV 288 (623)
Q Consensus 223 ~~~-~-d~lv~~--~--~~~~----~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~---~~~l~~~~~~~~~~~ 288 (623)
... . .+.+.. + ++++ ......++||+++|+.. +-+...|++.+++++. . ...+.+...-....|
T Consensus 121 dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~--DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~F 198 (346)
T COG2706 121 DGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVP--DLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVF 198 (346)
T ss_pred CCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEe--ecCCceEEEEEcccCccccccccccCCCCCcceEEE
Confidence 111 0 101111 1 1111 12235689999998864 3355678888888775 1 111222221123457
Q ss_pred EeeCCEEEE-EeCCCCCCeEEEEEeCCCCCceee----EEcCCC--CceEeEEEEe--CCEEEEEEeeCCcceEEEEECC
Q 044808 289 SHRGNQFFI-RRSDGGFHSDVLTCPVDNTFETTV----LIPHRE--RVRVEEVRLF--ADHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 289 ~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~~~~~----li~~~~--d~~i~~~~~~--~~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
-|+++..|+ +..++ .-.++.++...++.... .+|.+. +.....+.+. +++||++.| |...|.++.++
T Consensus 199 Hpn~k~aY~v~EL~s--tV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR--g~dsI~~f~V~ 274 (346)
T COG2706 199 HPNGKYAYLVNELNS--TVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR--GHDSIAVFSVD 274 (346)
T ss_pred cCCCcEEEEEeccCC--EEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC--CCCeEEEEEEc
Confidence 788888888 66651 34445554433332221 344432 1223445554 455665554 45567777776
Q ss_pred CCCCCcccccCCceee-cCCCceEEEeeeccccCCcCCceEEEEeecCCCCCeEEEEECCCCcEEEEE
Q 044808 360 PVGEPLKTLQGGRTVD-IFKSELCISRIHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTGISVLKK 426 (623)
Q Consensus 360 ~~g~~~~~l~~~~~i~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~ 426 (623)
..+..+ ..+. .+.++ .. -..++.++.++.+++.-..-.+ -.+|..|.++|++.++.
T Consensus 275 ~~~g~L------~~~~~~~teg-~~---PR~F~i~~~g~~Liaa~q~sd~-i~vf~~d~~TG~L~~~~ 331 (346)
T COG2706 275 PDGGKL------ELVGITPTEG-QF---PRDFNINPSGRFLIAANQKSDN-ITVFERDKETGRLTLLG 331 (346)
T ss_pred CCCCEE------EEEEEeccCC-cC---CccceeCCCCCEEEEEccCCCc-EEEEEEcCCCceEEecc
Confidence 543322 1111 11111 10 0234556666666665554444 78899999999876554
No 112
>PLN02965 Probable pheophorbidase
Probab=98.21 E-value=8.9e-06 Score=81.51 Aligned_cols=101 Identities=12% Similarity=0.042 Sum_probs=71.7
Q ss_pred EEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCC-
Q 044808 473 LLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSE- 551 (623)
Q Consensus 473 ~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~- 551 (623)
+||++||..... ..|. .....|.++||.|+.+|.||-|..... .....+++++.+-+.-+++. .+.
T Consensus 5 ~vvllHG~~~~~--~~w~--~~~~~L~~~~~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~dl~~~l~~--l~~~ 71 (255)
T PLN02965 5 HFVFVHGASHGA--WCWY--KLATLLDAAGFKSTCVDLTGAGISLTD-------SNTVSSSDQYNRPLFALLSD--LPPD 71 (255)
T ss_pred EEEEECCCCCCc--CcHH--HHHHHHhhCCceEEEecCCcCCCCCCC-------ccccCCHHHHHHHHHHHHHh--cCCC
Confidence 489999976443 2455 555667789999999999997754211 11134466666655555543 222
Q ss_pred CcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCc
Q 044808 552 DNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPS 586 (623)
Q Consensus 552 ~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 586 (623)
+++.+.|+|+||.++..++.++|++++.+|...+.
T Consensus 72 ~~~~lvGhSmGG~ia~~~a~~~p~~v~~lvl~~~~ 106 (255)
T PLN02965 72 HKVILVGHSIGGGSVTEALCKFTDKISMAIYVAAA 106 (255)
T ss_pred CCEEEEecCcchHHHHHHHHhCchheeEEEEEccc
Confidence 59999999999999999999999999888876654
No 113
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=98.19 E-value=1.1e-05 Score=81.43 Aligned_cols=104 Identities=16% Similarity=0.054 Sum_probs=72.8
Q ss_pred ccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCC
Q 044808 471 DPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCS 550 (623)
Q Consensus 471 ~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 550 (623)
.|+||++||.++... .|. .... .+.++|.|+.+|+||-|..... ......+.++.+.+..++++- +
T Consensus 28 ~~~vv~~hG~~~~~~--~~~--~~~~-~l~~~~~vi~~D~~G~G~S~~~-------~~~~~~~~~~~~~l~~~i~~~--~ 93 (278)
T TIGR03056 28 GPLLLLLHGTGASTH--SWR--DLMP-PLARSFRVVAPDLPGHGFTRAP-------FRFRFTLPSMAEDLSALCAAE--G 93 (278)
T ss_pred CCeEEEEcCCCCCHH--HHH--HHHH-HHhhCcEEEeecCCCCCCCCCc-------cccCCCHHHHHHHHHHHHHHc--C
Confidence 488999999654321 233 3333 4456899999999996643211 111346677777777776642 2
Q ss_pred CCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccc
Q 044808 551 EDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVD 588 (623)
Q Consensus 551 ~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 588 (623)
.+++.++|+|+||.+++.++.++|++.+++|+..+..+
T Consensus 94 ~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~v~~~~~~~ 131 (278)
T TIGR03056 94 LSPDGVIGHSAGAAIALRLALDGPVTPRMVVGINAALM 131 (278)
T ss_pred CCCceEEEECccHHHHHHHHHhCCcccceEEEEcCccc
Confidence 36789999999999999999999998888877766543
No 114
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=98.15 E-value=4.7e-06 Score=76.97 Aligned_cols=129 Identities=18% Similarity=0.141 Sum_probs=89.9
Q ss_pred EeeeEEECCCC-CeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChh
Q 044808 441 TESKRAYASDG-EEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQ 519 (623)
Q Consensus 441 ~~~~~~~s~dG-~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~ 519 (623)
.|.+.| ...| +.|.+| +| +...|+++++||||+...+..-. -......+.+||.|+.+.|-=+..
T Consensus 45 ~e~l~Y-g~~g~q~VDIw--g~------~~~~klfIfIHGGYW~~g~rk~c-lsiv~~a~~~gY~vasvgY~l~~q---- 110 (270)
T KOG4627|consen 45 VEHLRY-GEGGRQLVDIW--GS------TNQAKLFIFIHGGYWQEGDRKMC-LSIVGPAVRRGYRVASVGYNLCPQ---- 110 (270)
T ss_pred hhcccc-CCCCceEEEEe--cC------CCCccEEEEEecchhhcCchhcc-cchhhhhhhcCeEEEEeccCcCcc----
Confidence 455555 3344 456655 33 24579999999999876553322 023457788999999998753321
Q ss_pred HHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh-CCCeeeEEEecCCccchh
Q 044808 520 WHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNM-RPELFKVAVADVPSVDVL 590 (623)
Q Consensus 520 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~~~~d~~ 590 (623)
...-...+.|+..+++|..+.-- ..+.|.+.|+|+|..|++.++++ +.-+..+++..+|+.|+.
T Consensus 111 ------~htL~qt~~~~~~gv~filk~~~-n~k~l~~gGHSaGAHLa~qav~R~r~prI~gl~l~~GvY~l~ 175 (270)
T KOG4627|consen 111 ------VHTLEQTMTQFTHGVNFILKYTE-NTKVLTFGGHSAGAHLAAQAVMRQRSPRIWGLILLCGVYDLR 175 (270)
T ss_pred ------cccHHHHHHHHHHHHHHHHHhcc-cceeEEEcccchHHHHHHHHHHHhcCchHHHHHHHhhHhhHH
Confidence 12224578999999999887522 34679999999999999877765 444678888889999975
No 115
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.15 E-value=0.0029 Score=62.57 Aligned_cols=192 Identities=17% Similarity=0.143 Sum_probs=108.3
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccc-c--CccceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCccc
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKP-I--QGCLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSKD 227 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~-i--~~~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~d 227 (623)
.+..+.++|+|++|+++...+.|+++|+.+++..... . ..+..+.|++++.++++...+ ..|+.+++.++..
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---~~i~i~~~~~~~~-- 85 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD---KTIRLWDLETGEC-- 85 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCC---CeEEEEEcCcccc--
Confidence 4678899999999999987669999999988643321 1 122358999999444443221 1577888776422
Q ss_pred EEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcccee-EEEEeeCCEEEEEeCCCCCCe
Q 044808 228 TCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGID-MFVSHRGNQFFIRRSDGGFHS 306 (623)
Q Consensus 228 ~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~-~~~~~dg~~ly~sn~~g~~~~ 306 (623)
...+... ......+.+++++++++... ....+++.++.++.....+......+. ..+.+++..++....+ .
T Consensus 86 ~~~~~~~-~~~i~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~----~ 157 (289)
T cd00200 86 VRTLTGH-TSYVSSVAFSPDGRILSSSS---RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD----G 157 (289)
T ss_pred eEEEecc-CCcEEEEEEcCCCCEEEEec---CCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC----C
Confidence 2233322 22345577899977665433 235788888876541222222222222 2456664444434323 2
Q ss_pred EEEEEeCCCCCceeeEEcCCCCceEeEEEEeCC--EEEEEEeeCCcceEEEEECCC
Q 044808 307 DVLTCPVDNTFETTVLIPHRERVRVEEVRLFAD--HIAVYELEEGLPKITTYCLPP 360 (623)
Q Consensus 307 ~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~--~Lv~~~~~~g~~~l~v~~l~~ 360 (623)
.|..+++....... .+.... ..+..+.+..+ .+++... ++ .+.++++..
T Consensus 158 ~i~i~d~~~~~~~~-~~~~~~-~~i~~~~~~~~~~~l~~~~~-~~--~i~i~d~~~ 208 (289)
T cd00200 158 TIKLWDLRTGKCVA-TLTGHT-GEVNSVAFSPDGEKLLSSSS-DG--TIKLWDLST 208 (289)
T ss_pred cEEEEEccccccce-eEecCc-cccceEEECCCcCEEEEecC-CC--cEEEEECCC
Confidence 46666765443222 222222 13556666554 5555554 43 588888874
No 116
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.15 E-value=9.7e-06 Score=82.09 Aligned_cols=115 Identities=16% Similarity=0.081 Sum_probs=78.8
Q ss_pred CCCccEEEEEcCCCCCCCCCCCCchhhhHHHHH-CCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHc
Q 044808 468 DGSDPLLLFGYGSYGLGPSSYSNSIASRLTILD-RGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKS 546 (623)
Q Consensus 468 ~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 546 (623)
+...|++|++||-.+ .....|.. .....|+. .+|.|+.+|.+|.+... +..+. ..-...-+++...+++|.++
T Consensus 33 ~~~~p~vilIHG~~~-~~~~~~~~-~l~~~ll~~~~~nVi~vD~~~~~~~~--y~~a~--~~~~~v~~~la~~l~~L~~~ 106 (275)
T cd00707 33 NPSRPTRFIIHGWTS-SGEESWIS-DLRKAYLSRGDYNVIVVDWGRGANPN--YPQAV--NNTRVVGAELAKFLDFLVDN 106 (275)
T ss_pred CCCCCcEEEEcCCCC-CCCCcHHH-HHHHHHHhcCCCEEEEEECccccccC--hHHHH--HhHHHHHHHHHHHHHHHHHh
Confidence 345789999999443 32223330 22344555 58999999999863321 21111 01112235777888888887
Q ss_pred CCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccc
Q 044808 547 NYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVD 588 (623)
Q Consensus 547 ~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 588 (623)
..++.++|.+.|+|.||.+++.+..+.|++++.+++..|..-
T Consensus 107 ~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv~LDPa~p 148 (275)
T cd00707 107 TGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRITGLDPAGP 148 (275)
T ss_pred cCCChHHEEEEEecHHHHHHHHHHHHhcCccceeEEecCCcc
Confidence 557789999999999999999999999998999998766543
No 117
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=98.14 E-value=8.3e-06 Score=85.93 Aligned_cols=113 Identities=18% Similarity=0.119 Sum_probs=74.0
Q ss_pred ccEEEEEcCCCCCCCCC---------CCCchhhh---HHHHHCCcEEEEEeccC--CCcCCh-hHHHcccc---cCCCch
Q 044808 471 DPLLLFGYGSYGLGPSS---------YSNSIASR---LTILDRGIIFAIAHVRG--GDEKGK-QWHENGKL---LNKRNT 532 (623)
Q Consensus 471 ~P~il~~~Gg~~~~~~~---------~~~~~~~~---~~~~~~G~~v~~~~~RG--~~~~G~-~~~~~~~~---~~~~~~ 532 (623)
.|.||++||-.+..... .|. ... ..|...+|.|+.+|.|| +|.-+. .+...+.. .....+
T Consensus 31 ~~~vll~Hg~~~~~~~~~~~~~~~~~~w~--~~~~~~~~l~~~~~~vi~~D~~G~~~g~s~~~~~~~~~~~~~~~~~~~~ 108 (351)
T TIGR01392 31 SNAVLVCHALTGDAHVAGYHDDGDPGWWD--DLIGPGRAIDTDRYFVVCSNVLGGCYGSTGPSSINPGGRPYGSDFPLIT 108 (351)
T ss_pred CCEEEEcCCcCcchhhcccCCCCCCCchh--hccCCCCCcCCCceEEEEecCCCCCCCCCCCCCCCCCCCcCCCCCCCCc
Confidence 47889999955533111 122 221 25667899999999999 333332 22211110 011356
Q ss_pred HhHHHHHHHHHHHcCCCCCCc-EEEEEeChHHHHHHHHHHhCCCeeeEEEecCCcc
Q 044808 533 FTDFIACADYLIKSNYCSEDN-LCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSV 587 (623)
Q Consensus 533 ~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 587 (623)
++|+.+.+..++++- .-++ +.+.|+|+||.+++.++.++|++.+.+|...+..
T Consensus 109 ~~~~~~~~~~~~~~l--~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl~~~~~ 162 (351)
T TIGR01392 109 IRDDVKAQKLLLDHL--GIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVVLATSA 162 (351)
T ss_pred HHHHHHHHHHHHHHc--CCCCceEEEEECHHHHHHHHHHHHChHhhheEEEEccCC
Confidence 788887776666542 2357 9999999999999999999999998888776543
No 118
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.11 E-value=0.0034 Score=62.43 Aligned_cols=222 Identities=12% Similarity=0.082 Sum_probs=123.1
Q ss_pred eeEECCCCCEEEEEEeCc-eEEEEECCCCCccccccCccceeEEe-cCCeEEEEEeCCCCCCeEEEEECCCCCcccEEEE
Q 044808 154 AFKVSPNNKLVAFRENCG-TVCVIDSETGAPAEKPIQGCLEFEWA-GDEAFLYTRRNAIAEPQVWFHKLGEEQSKDTCLY 231 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~~~i~~~~~~~Ws-pDg~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~ 231 (623)
.+.|.+....|.|+--.+ .|+.+|+++++...-..+...+++.. +||+++.+... .+.+.++.++. -+.++
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G~~~~~~~g~l~v~~~~-----~~~~~d~~~g~--~~~~~ 76 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNGMAFDRPDGRLYVADSG-----GIAVVDPDTGK--VTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEEEEEECTTSEEEEEETT-----CEEEEETTTTE--EEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCceEEEEccCCEEEEEEcC-----ceEEEecCCCc--EEEEe
Confidence 467888555555553233 99999999987653334444566666 67788776532 24444777763 23344
Q ss_pred eec-C--Cce-eEEEEEcCCCcEEEEEeecce----e--eEEEEEECCCCCceeecCCCccce-eEEEEeeCCEEEEEeC
Q 044808 232 RTR-E--DLF-DLTLEASESKKFLFVKSKTKV----T--GFVYYFDVSRPETLWFLPPWHLGI-DMFVSHRGNQFFIRRS 300 (623)
Q Consensus 232 ~~~-~--~~~-~~~~~~S~Dg~~l~i~s~~~~----~--s~l~~~dl~~~~~~~~l~~~~~~~-~~~~~~dg~~ly~sn~ 300 (623)
... . +.. .-++.+.++|+ |+++..... . ..||.++.. ++ ...+....... ...++++++.||+++.
T Consensus 77 ~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 77 DLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred eccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCcchheeeccc
Confidence 432 1 222 23578899998 566553221 1 579999998 43 33332211111 1358899999998554
Q ss_pred CCCCCeEEEEEeCCCCC--ce--eeEEcCCCC-ceEeEEEEeC-CEEEEEEeeCCcceEEEEECCCCCCCcccccCCcee
Q 044808 301 DGGFHSDVLTCPVDNTF--ET--TVLIPHRER-VRVEEVRLFA-DHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTV 374 (623)
Q Consensus 301 ~g~~~~~L~~~d~~~~~--~~--~~li~~~~d-~~i~~~~~~~-~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i 374 (623)
. +.+|++++++... .. +.++..... -...++.++. +.|++..... .+|.+++.+ |+.+ ..+
T Consensus 154 ~---~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~--~~I~~~~p~--G~~~------~~i 220 (246)
T PF08450_consen 154 F---NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGG--GRIVVFDPD--GKLL------REI 220 (246)
T ss_dssp T---TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETT--TEEEEEETT--SCEE------EEE
T ss_pred c---cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCC--CEEEEECCC--ccEE------EEE
Confidence 4 3468888875332 11 112222222 1367888876 5677766533 469999887 7643 457
Q ss_pred ecCCCceEEEeeeccccCCcCCceEEEEe
Q 044808 375 DIFKSELCISRIHGIRDSQFSSSILRICF 403 (623)
Q Consensus 375 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (623)
.+|.+..+. ..+. .++.++|+++-
T Consensus 221 ~~p~~~~t~----~~fg-g~~~~~L~vTt 244 (246)
T PF08450_consen 221 ELPVPRPTN----CAFG-GPDGKTLYVTT 244 (246)
T ss_dssp E-SSSSEEE----EEEE-STTSSEEEEEE
T ss_pred cCCCCCEEE----EEEE-CCCCCEEEEEe
Confidence 777432221 1121 24566777653
No 119
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=98.10 E-value=3.5e-06 Score=82.24 Aligned_cols=116 Identities=15% Similarity=0.101 Sum_probs=62.9
Q ss_pred CCccEEEEEcCCCCCCCCCCCCchhhhHH--HHHCCcEEEEEeccC---CCcCC---hhHHHcccccC-CCchHhHHHHH
Q 044808 469 GSDPLLLFGYGSYGLGPSSYSNSIASRLT--ILDRGIIFAIAHVRG---GDEKG---KQWHENGKLLN-KRNTFTDFIAC 539 (623)
Q Consensus 469 ~~~P~il~~~Gg~~~~~~~~~~~~~~~~~--~~~~G~~v~~~~~RG---~~~~G---~~~~~~~~~~~-~~~~~~D~~~~ 539 (623)
.+.|+||+.|| +|... ..|. .... .......++.++-.- ....| ..|+....... .....+++..+
T Consensus 12 ~~~~lvi~LHG-~G~~~-~~~~---~~~~~~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s 86 (216)
T PF02230_consen 12 KAKPLVILLHG-YGDSE-DLFA---LLAELNLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEES 86 (216)
T ss_dssp T-SEEEEEE---TTS-H-HHHH---HHHHHHTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHH
T ss_pred CCceEEEEECC-CCCCc-chhH---HHHhhcccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHH
Confidence 46899999999 45553 1111 1112 112366666664321 11223 38887432222 12234444443
Q ss_pred HHHH-------HHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchh
Q 044808 540 ADYL-------IKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVL 590 (623)
Q Consensus 540 ~~~l-------~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~ 590 (623)
++.| ++.+ ++++||.+.|.|.||.|++.++.++|+.|+++|+..|.+-..
T Consensus 87 ~~~l~~li~~~~~~~-i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv~lsG~~~~~ 143 (216)
T PF02230_consen 87 AERLDELIDEEVAYG-IDPSRIFLGGFSQGAAMALYLALRYPEPLAGVVALSGYLPPE 143 (216)
T ss_dssp HHHHHHHHHHHHHTT---GGGEEEEEETHHHHHHHHHHHCTSSTSSEEEEES---TTG
T ss_pred HHHHHHHHHHHHHcC-CChhheehhhhhhHHHHHHHHHHHcCcCcCEEEEeecccccc
Confidence 3332 2344 999999999999999999999999999999999999987543
No 120
>PRK03592 haloalkane dehalogenase; Provisional
Probab=98.10 E-value=2e-05 Score=80.84 Aligned_cols=101 Identities=14% Similarity=0.046 Sum_probs=71.8
Q ss_pred ccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCC
Q 044808 471 DPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCS 550 (623)
Q Consensus 471 ~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 550 (623)
.|.||++||.++.. ..|. .....|.++| -|+.+|.||.|..... ....++.+..+-+..++++- .
T Consensus 27 g~~vvllHG~~~~~--~~w~--~~~~~L~~~~-~via~D~~G~G~S~~~--------~~~~~~~~~a~dl~~ll~~l--~ 91 (295)
T PRK03592 27 GDPIVFLHGNPTSS--YLWR--NIIPHLAGLG-RCLAPDLIGMGASDKP--------DIDYTFADHARYLDAWFDAL--G 91 (295)
T ss_pred CCEEEEECCCCCCH--HHHH--HHHHHHhhCC-EEEEEcCCCCCCCCCC--------CCCCCHHHHHHHHHHHHHHh--C
Confidence 47788899976544 2344 5556677776 9999999998764321 11134555554444444431 2
Q ss_pred CCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCc
Q 044808 551 EDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPS 586 (623)
Q Consensus 551 ~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 586 (623)
.+++.+.|+|.||.+++.++.++|++++.+|...++
T Consensus 92 ~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil~~~~ 127 (295)
T PRK03592 92 LDDVVLVGHDWGSALGFDWAARHPDRVRGIAFMEAI 127 (295)
T ss_pred CCCeEEEEECHHHHHHHHHHHhChhheeEEEEECCC
Confidence 378999999999999999999999999999987763
No 121
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=98.09 E-value=2.5e-05 Score=82.79 Aligned_cols=102 Identities=13% Similarity=0.084 Sum_probs=73.8
Q ss_pred CccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCC
Q 044808 470 SDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYC 549 (623)
Q Consensus 470 ~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~ 549 (623)
+.|.||++||..+.. . .|. ... ..+.++|.|+.+|.||-|.... ......+.|+.+.+..++++ .
T Consensus 130 ~~~~vl~~HG~~~~~-~-~~~--~~~-~~l~~~~~v~~~d~~g~G~s~~--------~~~~~~~~~~~~~~~~~~~~--~ 194 (371)
T PRK14875 130 DGTPVVLIHGFGGDL-N-NWL--FNH-AALAAGRPVIALDLPGHGASSK--------AVGAGSLDELAAAVLAFLDA--L 194 (371)
T ss_pred CCCeEEEECCCCCcc-c-hHH--HHH-HHHhcCCEEEEEcCCCCCCCCC--------CCCCCCHHHHHHHHHHHHHh--c
Confidence 457889999854332 2 233 223 3445679999999999776532 12245677777777776654 5
Q ss_pred CCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCc
Q 044808 550 SEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPS 586 (623)
Q Consensus 550 d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 586 (623)
++.++.+.|+|+||+++..++.++|+..++.|...|.
T Consensus 195 ~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv~~~~~ 231 (371)
T PRK14875 195 GIERAHLVGHSMGGAVALRLAARAPQRVASLTLIAPA 231 (371)
T ss_pred CCccEEEEeechHHHHHHHHHHhCchheeEEEEECcC
Confidence 6679999999999999998888899999998887765
No 122
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=98.08 E-value=0.00025 Score=74.52 Aligned_cols=157 Identities=15% Similarity=0.244 Sum_probs=85.9
Q ss_pred eeEECCCCCEEEEEEeCc--eEEEEECCCCC--ccc-c--ccC-ccc--eeEEecCCeEEEEEeCCCCCCeEEEEECC--
Q 044808 154 AFKVSPNNKLVAFRENCG--TVCVIDSETGA--PAE-K--PIQ-GCL--EFEWAGDEAFLYTRRNAIAEPQVWFHKLG-- 221 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~--~l~v~dl~tg~--~~~-~--~i~-~~~--~~~WspDg~l~y~~~d~~~~~~v~~~~lg-- 221 (623)
.+.++|||++| |+.+.+ .|+++++..+. ... . .++ +.. .++|+||++++|+..... ..|..+++.
T Consensus 148 ~v~~~pdg~~v-~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s--~~v~v~~~~~~ 224 (345)
T PF10282_consen 148 QVVFSPDGRFV-YVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS--NTVSVFDYDPS 224 (345)
T ss_dssp EEEE-TTSSEE-EEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT--TEEEEEEEETT
T ss_pred eEEECCCCCEE-EEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC--CcEEEEeeccc
Confidence 57899999998 455655 88888887654 322 1 222 222 399999997777765322 245444544
Q ss_pred CCCcccEEEEe---ec-CC-ceeEEEEEcCCCcEEEEEeecceeeEEEEEEC--CCCCceeec--CCC--ccceeEEEEe
Q 044808 222 EEQSKDTCLYR---TR-ED-LFDLTLEASESKKFLFVKSKTKVTGFVYYFDV--SRPETLWFL--PPW--HLGIDMFVSH 290 (623)
Q Consensus 222 t~~~~d~lv~~---~~-~~-~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl--~~~~~~~~l--~~~--~~~~~~~~~~ 290 (623)
++..+...... +. .. .....+.+||||++|++.... .+.|.++++ +++. ++.+ .+. ..-....+++
T Consensus 225 ~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~--~~sI~vf~~d~~~g~-l~~~~~~~~~G~~Pr~~~~s~ 301 (345)
T PF10282_consen 225 DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG--SNSISVFDLDPATGT-LTLVQTVPTGGKFPRHFAFSP 301 (345)
T ss_dssp TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT--TTEEEEEEECTTTTT-EEEEEEEEESSSSEEEEEE-T
T ss_pred CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc--CCEEEEEEEecCCCc-eEEEEEEeCCCCCccEEEEeC
Confidence 33111111111 11 11 134578899999999874433 445555544 5555 3322 111 1111245789
Q ss_pred eCCEEEEEeCCCCCCeEEEEEeCCCCC
Q 044808 291 RGNQFFIRRSDGGFHSDVLTCPVDNTF 317 (623)
Q Consensus 291 dg~~ly~sn~~g~~~~~L~~~d~~~~~ 317 (623)
+|+.||++|.+ ..+..++.+|.+++.
T Consensus 302 ~g~~l~Va~~~-s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 302 DGRYLYVANQD-SNTVSVFDIDPDTGK 327 (345)
T ss_dssp TSSEEEEEETT-TTEEEEEEEETTTTE
T ss_pred CCCEEEEEecC-CCeEEEEEEeCCCCc
Confidence 99988887766 456777788876664
No 123
>PRK06489 hypothetical protein; Provisional
Probab=98.08 E-value=2.7e-05 Score=82.30 Aligned_cols=109 Identities=17% Similarity=0.208 Sum_probs=68.8
Q ss_pred ccEEEEEcCCCCCCCCCCCCchhhh--------HHHHHCCcEEEEEeccCCCcCChhHHHccc-ccCCCchHhHHHHHH-
Q 044808 471 DPLLLFGYGSYGLGPSSYSNSIASR--------LTILDRGIIFAIAHVRGGDEKGKQWHENGK-LLNKRNTFTDFIACA- 540 (623)
Q Consensus 471 ~P~il~~~Gg~~~~~~~~~~~~~~~--------~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~-~~~~~~~~~D~~~~~- 540 (623)
.|.||++||..+.... .+. ... ..++.++|.|+.+|.||.|..-.. .... .......++|+.+.+
T Consensus 69 gpplvllHG~~~~~~~-~~~--~~~~~~l~~~~~~l~~~~~~Via~Dl~GhG~S~~p--~~~~~~~~~~~~~~~~a~~~~ 143 (360)
T PRK06489 69 DNAVLVLHGTGGSGKS-FLS--PTFAGELFGPGQPLDASKYFIILPDGIGHGKSSKP--SDGLRAAFPRYDYDDMVEAQY 143 (360)
T ss_pred CCeEEEeCCCCCchhh-hcc--chhHHHhcCCCCcccccCCEEEEeCCCCCCCCCCC--CcCCCCCCCcccHHHHHHHHH
Confidence 5789999998765422 111 111 123467999999999997643210 0000 001124667776543
Q ss_pred HHHHHcCCCCCCcEE-EEEeChHHHHHHHHHHhCCCeeeEEEecCCc
Q 044808 541 DYLIKSNYCSEDNLC-IEGGSAGGMLIGAVLNMRPELFKVAVADVPS 586 (623)
Q Consensus 541 ~~l~~~~~~d~~ri~-i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 586 (623)
..+.++- +-+++. +.|+|.||++++.++.++|++++.+|...+.
T Consensus 144 ~~l~~~l--gi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LVLi~s~ 188 (360)
T PRK06489 144 RLVTEGL--GVKHLRLILGTSMGGMHAWMWGEKYPDFMDALMPMASQ 188 (360)
T ss_pred HHHHHhc--CCCceeEEEEECHHHHHHHHHHHhCchhhheeeeeccC
Confidence 4444432 225765 8999999999999999999999999876543
No 124
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.07 E-value=0.00052 Score=74.60 Aligned_cols=194 Identities=16% Similarity=0.154 Sum_probs=123.0
Q ss_pred cEEEeeeEECCCCCEEEEEEeCceEEEEECCCCCccc---cccCccceeEEecCCeEEEE-EeCCCCCCeEEEEECCCCC
Q 044808 149 NYRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAE---KPIQGCLEFEWAGDEAFLYT-RRNAIAEPQVWFHKLGEEQ 224 (623)
Q Consensus 149 ~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~---~~i~~~~~~~WspDg~l~y~-~~d~~~~~~v~~~~lgt~~ 224 (623)
+.++..++.||||++||-+.+.+.|.|||..+|-=.. +.-.++.++.|+.+|..+++ +.|. .|..+++...-
T Consensus 350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDG----tVRAwDlkRYr 425 (893)
T KOG0291|consen 350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDG----TVRAWDLKRYR 425 (893)
T ss_pred ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCC----eEEeeeecccc
Confidence 5688899999999999999988899999999985322 22233456999999955554 4454 35556654331
Q ss_pred cccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeE--EEEeeCCEEEE-EeCC
Q 044808 225 SKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDM--FVSHRGNQFFI-RRSD 301 (623)
Q Consensus 225 ~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~--~~~~dg~~ly~-sn~~ 301 (623)
.-..|..+.+..+..++..|.|..++. ...+.-+|++.++++|+ +.-+....++... .++++|+.|+= |...
T Consensus 426 --NfRTft~P~p~QfscvavD~sGelV~A--G~~d~F~IfvWS~qTGq-llDiLsGHEgPVs~l~f~~~~~~LaS~SWDk 500 (893)
T KOG0291|consen 426 --NFRTFTSPEPIQFSCVAVDPSGELVCA--GAQDSFEIFVWSVQTGQ-LLDILSGHEGPVSGLSFSPDGSLLASGSWDK 500 (893)
T ss_pred --eeeeecCCCceeeeEEEEcCCCCEEEe--eccceEEEEEEEeecCe-eeehhcCCCCcceeeEEccccCeEEeccccc
Confidence 122344455555556778888987665 44456799999999997 5545555555333 58888886665 4433
Q ss_pred CCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECC
Q 044808 302 GGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 302 g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
..++|-+=-..+..+. ++...++.--.+.++++.|.+...++ +|.+++..
T Consensus 501 ---TVRiW~if~s~~~vEt--l~i~sdvl~vsfrPdG~elaVaTldg---qItf~d~~ 550 (893)
T KOG0291|consen 501 ---TVRIWDIFSSSGTVET--LEIRSDVLAVSFRPDGKELAVATLDG---QITFFDIK 550 (893)
T ss_pred ---eEEEEEeeccCceeee--EeeccceeEEEEcCCCCeEEEEEecc---eEEEEEhh
Confidence 3555544322222222 23333433335566788888877653 46666654
No 125
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=98.04 E-value=5.3e-05 Score=82.14 Aligned_cols=122 Identities=14% Similarity=0.126 Sum_probs=79.0
Q ss_pred CCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhh-HHHH---HCCcEEEEEeccCCCcCChhHHHc
Q 044808 448 ASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASR-LTIL---DRGIIFAIAHVRGGDEKGKQWHEN 523 (623)
Q Consensus 448 s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~-~~~~---~~G~~v~~~~~RG~~~~G~~~~~~ 523 (623)
+..|.++++..--|++. ...|.||++||.++... .|. ... ..|. .+||.|+.+|.||-|.....
T Consensus 182 ~~~~~~l~~~~~gp~~~----~~k~~VVLlHG~~~s~~--~W~--~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p---- 249 (481)
T PLN03087 182 SSSNESLFVHVQQPKDN----KAKEDVLFIHGFISSSA--FWT--ETLFPNFSDAAKSTYRLFAVDLLGFGRSPKP---- 249 (481)
T ss_pred eeCCeEEEEEEecCCCC----CCCCeEEEECCCCccHH--HHH--HHHHHHHHHHhhCCCEEEEECCCCCCCCcCC----
Confidence 33456676654444432 22477888999765431 233 221 2333 47999999999996644211
Q ss_pred ccccCCCchHhHHHHHHH-HHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCc
Q 044808 524 GKLLNKRNTFTDFIACAD-YLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPS 586 (623)
Q Consensus 524 ~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 586 (623)
......+++..+.+. .+++. ...+++.+.|+|.||+++..++.++|++++++|...|.
T Consensus 250 ---~~~~ytl~~~a~~l~~~ll~~--lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVLi~~~ 308 (481)
T PLN03087 250 ---ADSLYTLREHLEMIERSVLER--YKVKSFHIVAHSLGCILALALAVKHPGAVKSLTLLAPP 308 (481)
T ss_pred ---CCCcCCHHHHHHHHHHHHHHH--cCCCCEEEEEECHHHHHHHHHHHhChHhccEEEEECCC
Confidence 011235666666553 44443 23468999999999999999999999999999887753
No 126
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=98.03 E-value=2.5e-05 Score=79.23 Aligned_cols=119 Identities=18% Similarity=0.123 Sum_probs=77.9
Q ss_pred CCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccC
Q 044808 449 SDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLN 528 (623)
Q Consensus 449 ~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~ 528 (623)
.||.+|..+.. ++. ++ .|.||++||-.+.. . .|. ..... +.++|.|+.+|.||-|..... .
T Consensus 9 ~~~~~~~~~~~--~~~---~~-~~plvllHG~~~~~-~-~w~--~~~~~-L~~~~~vi~~Dl~G~G~S~~~--------~ 69 (276)
T TIGR02240 9 LDGQSIRTAVR--PGK---EG-LTPLLIFNGIGANL-E-LVF--PFIEA-LDPDLEVIAFDVPGVGGSSTP--------R 69 (276)
T ss_pred cCCcEEEEEEe--cCC---CC-CCcEEEEeCCCcch-H-HHH--HHHHH-hccCceEEEECCCCCCCCCCC--------C
Confidence 37777776532 111 12 25678899943333 2 344 33333 456899999999997654311 1
Q ss_pred CCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccc
Q 044808 529 KRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVD 588 (623)
Q Consensus 529 ~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 588 (623)
....++++.+-++-+++. .+.+++.++|+|+||++++.++.++|++.+..|...+...
T Consensus 70 ~~~~~~~~~~~~~~~i~~--l~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl~~~~~~ 127 (276)
T TIGR02240 70 HPYRFPGLAKLAARMLDY--LDYGQVNAIGVSWGGALAQQFAHDYPERCKKLILAATAAG 127 (276)
T ss_pred CcCcHHHHHHHHHHHHHH--hCcCceEEEEECHHHHHHHHHHHHCHHHhhheEEeccCCc
Confidence 123455555555554443 2346899999999999999999999999999888877653
No 127
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=98.03 E-value=1.6e-05 Score=77.98 Aligned_cols=95 Identities=15% Similarity=0.087 Sum_probs=64.0
Q ss_pred cEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCC
Q 044808 472 PLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSE 551 (623)
Q Consensus 472 P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 551 (623)
|.||++||..+.. ..|. ..... +..+|.|+.+|.||-|.... ....++.|+ ++.+.+.. .
T Consensus 5 ~~iv~~HG~~~~~--~~~~--~~~~~-l~~~~~vi~~d~~G~G~s~~---------~~~~~~~~~---~~~~~~~~---~ 64 (245)
T TIGR01738 5 VHLVLIHGWGMNA--EVFR--CLDEE-LSAHFTLHLVDLPGHGRSRG---------FGPLSLADA---AEAIAAQA---P 64 (245)
T ss_pred ceEEEEcCCCCch--hhHH--HHHHh-hccCeEEEEecCCcCccCCC---------CCCcCHHHH---HHHHHHhC---C
Confidence 7789999953322 2343 33333 34689999999999665321 112234444 44444432 3
Q ss_pred CcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCc
Q 044808 552 DNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPS 586 (623)
Q Consensus 552 ~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 586 (623)
+++.++|+|+||++++.++.++|++++++|...+.
T Consensus 65 ~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~il~~~~ 99 (245)
T TIGR01738 65 DPAIWLGWSLGGLVALHIAATHPDRVRALVTVASS 99 (245)
T ss_pred CCeEEEEEcHHHHHHHHHHHHCHHhhheeeEecCC
Confidence 79999999999999999999999988888866543
No 128
>KOG3101 consensus Esterase D [General function prediction only]
Probab=98.03 E-value=3.3e-06 Score=78.20 Aligned_cols=136 Identities=14% Similarity=0.106 Sum_probs=85.7
Q ss_pred CeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHH-CCcEEEEEe--ccCCCc--------CC--h
Q 044808 452 EEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILD-RGIIFAIAH--VRGGDE--------KG--K 518 (623)
Q Consensus 452 ~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~-~G~~v~~~~--~RG~~~--------~G--~ 518 (623)
..+-.-++.|++. ..+++.|+|.|.-|= ......|..-..+|..++ .|.+|+.|| +||-.- || -
T Consensus 26 c~Mtf~vylPp~a-~~~k~~P~lf~LSGL--TCT~~Nfi~Ksg~qq~As~hgl~vV~PDTSPRG~~v~g~~eswDFG~GA 102 (283)
T KOG3101|consen 26 CSMTFGVYLPPDA-PRGKRCPVLFYLSGL--TCTHENFIEKSGFQQQASKHGLAVVAPDTSPRGVEVAGDDESWDFGQGA 102 (283)
T ss_pred cceEEEEecCCCc-ccCCcCceEEEecCC--cccchhhHhhhhHHHhHhhcCeEEECCCCCCCccccCCCcccccccCCc
Confidence 3444556778877 556679999998873 223334442234566666 499999998 566321 22 1
Q ss_pred hHHHc-ccccCCC-chHhHH-HHHHHHHHH--cCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchh
Q 044808 519 QWHEN-GKLLNKR-NTFTDF-IACADYLIK--SNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVL 590 (623)
Q Consensus 519 ~~~~~-~~~~~~~-~~~~D~-~~~~~~l~~--~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~ 590 (623)
-|+-. -...|+. --+.|. ..-+--++. .--+|+.|++|.|+|+||+=++-+..+.|.+|+.+.|.+|++|..
T Consensus 103 GFYvnAt~epw~~~yrMYdYv~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kykSvSAFAPI~NP~ 179 (283)
T KOG3101|consen 103 GFYVNATQEPWAKHYRMYDYVVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYKSVSAFAPICNPI 179 (283)
T ss_pred eeEEecccchHhhhhhHHHHHHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCcccccceeccccccCcc
Confidence 22211 1112222 122222 222222222 234899999999999999999888888999999999999999986
No 129
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.03 E-value=0.0021 Score=67.86 Aligned_cols=247 Identities=17% Similarity=0.101 Sum_probs=119.8
Q ss_pred eeEECCCCCEEEEEEeCceEEEEECCCCCccccccC---ccceeEEecCCeEEEEEeCCCCCC-eEEEEECCCCCcccEE
Q 044808 154 AFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQ---GCLEFEWAGDEAFLYTRRNAIAEP-QVWFHKLGEEQSKDTC 229 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~---~~~~~~WspDg~l~y~~~d~~~~~-~v~~~~lgt~~~~d~l 229 (623)
...+||||+++..+...+.|.++|+.+++.+.. +. +..+++.|+||+++|+..- .+ .+...+..|.+. ..
T Consensus 41 ~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~-i~~G~~~~~i~~s~DG~~~~v~n~---~~~~v~v~D~~tle~--v~ 114 (369)
T PF02239_consen 41 GLKFSPDGRYLYVANRDGTVSVIDLATGKVVAT-IKVGGNPRGIAVSPDGKYVYVANY---EPGTVSVIDAETLEP--VK 114 (369)
T ss_dssp EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEE-EE-SSEEEEEEE--TTTEEEEEEE---ETTEEEEEETTT--E--EE
T ss_pred EEEecCCCCEEEEEcCCCeEEEEECCcccEEEE-EecCCCcceEEEcCCCCEEEEEec---CCCceeEeccccccc--ee
Confidence 457999999966554334999999999998763 32 2335999999966666542 12 677777766532 11
Q ss_pred EEe-e--c---CCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCce--eecCCCccceeEEEEeeCCEEEE-EeC
Q 044808 230 LYR-T--R---EDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETL--WFLPPWHLGIDMFVSHRGNQFFI-RRS 300 (623)
Q Consensus 230 v~~-~--~---~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~--~~l~~~~~~~~~~~~~dg~~ly~-sn~ 300 (623)
... . + .+.....+.-|++....++.. ..+.++|++|.++...+ +.+.....-....+++++..|++ .+.
T Consensus 115 ~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~l--kd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~ 192 (369)
T PF02239_consen 115 TIPTGGMPVDGPESRVAAIVASPGRPEFVVNL--KDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANG 192 (369)
T ss_dssp EEE--EE-TTTS---EEEEEE-SSSSEEEEEE--TTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGG
T ss_pred ecccccccccccCCCceeEEecCCCCEEEEEE--ccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccc
Confidence 111 1 0 011234555678877655533 34569999998876411 11111111112357888888887 665
Q ss_pred CCCCCeEEEEEeCCCCCceeeEEcCCCCc---eEeEEEEeCCEEEEEEeeCCcceEEEEECCCCC-CCcccccCCceeec
Q 044808 301 DGGFHSDVLTCPVDNTFETTVLIPHRERV---RVEEVRLFADHIAVYELEEGLPKITTYCLPPVG-EPLKTLQGGRTVDI 376 (623)
Q Consensus 301 ~g~~~~~L~~~d~~~~~~~~~li~~~~d~---~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g-~~~~~l~~~~~i~~ 376 (623)
. .+|..+|.++... ..++.-.... .+..+--.+-..+......+...+-.+..+... .....+...+++..
T Consensus 193 s----n~i~viD~~~~k~-v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~ 267 (369)
T PF02239_consen 193 S----NKIAVIDTKTGKL-VALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPT 267 (369)
T ss_dssp G----TEEEEEETTTTEE-EEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-
T ss_pred c----ceeEEEeeccceE-EEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEEC
Confidence 4 2788888766532 1222221110 112221112334444444444444444333211 01111212244554
Q ss_pred CCCceEEEeeeccccCCcCCceEEEE-eecCCCCCeEEEEECCCCc
Q 044808 377 FKSELCISRIHGIRDSQFSSSILRIC-FYTMRMPFSAYDYDMNTGI 421 (623)
Q Consensus 377 p~~~~~~~~~~~~~~~~~~~~~~~~~-~ss~~~P~~~~~~d~~~~~ 421 (623)
++...- ...+++++.+++. +.++. -..+..+|.++.+
T Consensus 268 ~G~glF-------i~thP~s~~vwvd~~~~~~-~~~v~viD~~tl~ 305 (369)
T PF02239_consen 268 QGGGLF-------IKTHPDSRYVWVDTFLNPD-ADTVQVIDKKTLK 305 (369)
T ss_dssp SSSS---------EE--TT-SEEEEE-TT-SS-HT-EEEEECCGTE
T ss_pred CCCcce-------eecCCCCccEEeeccCCCC-CceEEEEECcCcc
Confidence 443211 2336788888886 33343 5689999987764
No 130
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=98.02 E-value=9.1e-06 Score=90.97 Aligned_cols=135 Identities=15% Similarity=0.164 Sum_probs=87.8
Q ss_pred CCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCC-CCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccc
Q 044808 448 ASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSY-GLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKL 526 (623)
Q Consensus 448 s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~-~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~ 526 (623)
+.|-. ..-|+.|... ...+ .|++||+|||- .......|........+..+..+|+.+|||=|- +| |...+..
T Consensus 93 sEDCL--ylNV~tp~~~-~~~~-~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~-lG--F~st~d~ 165 (545)
T KOG1516|consen 93 SEDCL--YLNVYTPQGC-SESK-LPVMVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGP-LG--FLSTGDS 165 (545)
T ss_pred cCCCc--eEEEeccCCC-ccCC-CCEEEEEeCCceeeccccchhhcCchhccccCCEEEEEeccccee-ce--eeecCCC
Confidence 34543 3444555543 2112 89999999993 222222232112334555678999999999762 33 3333322
Q ss_pred c-CCCchHhHHHHHHHHHHHc--C-CCCCCcEEEEEeChHHHHHHHHHHh--CCCeeeEEEecCCccch
Q 044808 527 L-NKRNTFTDFIACADYLIKS--N-YCSEDNLCIEGGSAGGMLIGAVLNM--RPELFKVAVADVPSVDV 589 (623)
Q Consensus 527 ~-~~~~~~~D~~~~~~~l~~~--~-~~d~~ri~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~~~d~ 589 (623)
. .|-..+.|++.|++|+.++ . --||++|.++|+|+||..+...+.. ...+|+.+|...|..-.
T Consensus 166 ~~~gN~gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~Sp~s~~LF~~aI~~SG~~~~ 234 (545)
T KOG1516|consen 166 AAPGNLGLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLSPHSRGLFHKAISMSGNALS 234 (545)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcCHhhHHHHHHHHhhcccccc
Confidence 2 2555677999999999874 2 2699999999999999999776643 12589999988886543
No 131
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.02 E-value=0.0024 Score=66.07 Aligned_cols=159 Identities=11% Similarity=0.132 Sum_probs=89.0
Q ss_pred eEECCCCCEEEEEEeCceEEEEECCCCCcccc-ccCcc-ce-eEEec--CC-eEEEEEeCC-C---------------CC
Q 044808 155 FKVSPNNKLVAFRENCGTVCVIDSETGAPAEK-PIQGC-LE-FEWAG--DE-AFLYTRRNA-I---------------AE 212 (623)
Q Consensus 155 ~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~-~i~~~-~~-~~Wsp--Dg-~l~y~~~d~-~---------------~~ 212 (623)
..+||+.+.|.|..+..+|+.+||+|++.... .++.. .+ ..|+. |+ .++...... . .+
T Consensus 86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~ 165 (386)
T PF14583_consen 86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEAR 165 (386)
T ss_dssp -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC-
T ss_pred eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhC
Confidence 57899999999987655899999999886321 34433 23 78863 34 444443311 0 23
Q ss_pred C--eEEEEECCCCCcccEEEEeecCCceeEEEEEcCCC-cEEEEEeec---ceeeEEEEEECCCCCceeecCCCccceeE
Q 044808 213 P--QVWFHKLGEEQSKDTCLYRTREDLFDLTLEASESK-KFLFVKSKT---KVTGFVYYFDVSRPETLWFLPPWHLGIDM 286 (623)
Q Consensus 213 ~--~v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg-~~l~i~s~~---~~~s~l~~~dl~~~~~~~~l~~~~~~~~~ 286 (623)
| +|+..++.+++ ...|+++.. |.-.+..||.. ..|.+.... ..+.++|.++.++.. .+++.++..+...
T Consensus 166 p~~~i~~idl~tG~--~~~v~~~~~--wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~-~~~v~~~~~~e~~ 240 (386)
T PF14583_consen 166 PHCRIFTIDLKTGE--RKVVFEDTD--WLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSN-VKKVHRRMEGESV 240 (386)
T ss_dssp --EEEEEEETTT----EEEEEEESS---EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEE
T ss_pred CCceEEEEECCCCc--eeEEEecCc--cccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCc-ceeeecCCCCccc
Confidence 4 89999999884 567877643 44456667744 445443322 234689999988776 6677666554332
Q ss_pred ---EEEeeCCEEEE-EeCCCCCCeEEEEEeCCCCCc
Q 044808 287 ---FVSHRGNQFFI-RRSDGGFHSDVLTCPVDNTFE 318 (623)
Q Consensus 287 ---~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~~ 318 (623)
.|.+||..+++ +-..+...+.|+.+++.+.+.
T Consensus 241 gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~ 276 (386)
T PF14583_consen 241 GHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER 276 (386)
T ss_dssp EEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E
T ss_pred ccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc
Confidence 48899999988 654335567899999987653
No 132
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.01 E-value=0.00016 Score=69.09 Aligned_cols=97 Identities=14% Similarity=0.141 Sum_probs=62.5
Q ss_pred EeeeEECCCCCEEEEEEeCc--eEEEEECCCCCccccccCc--cceeEEecCCe-EEEEEeCCCCCCeEEEEECCCCCcc
Q 044808 152 ITAFKVSPNNKLVAFRENCG--TVCVIDSETGAPAEKPIQG--CLEFEWAGDEA-FLYTRRNAIAEPQVWFHKLGEEQSK 226 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~--~l~v~dl~tg~~~~~~i~~--~~~~~WspDg~-l~y~~~d~~~~~~v~~~~lgt~~~~ 226 (623)
|..++|||+|+.+|...... .+.++|++ ++.+. .+.. ...+.|||+|+ ++....+. ....|.++++.+.
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~-~~~~~~~n~i~wsP~G~~l~~~g~~n-~~G~l~~wd~~~~--- 135 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIF-SFGTQPRNTISWSPDGRFLVLAGFGN-LNGDLEFWDVRKK--- 135 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeE-eecCCCceEEEECCCCCEEEEEEccC-CCcEEEEEECCCC---
Confidence 78899999999988775332 89999997 33332 2332 22499999995 44444332 1126788887643
Q ss_pred cEEEEeecCCceeEEEEEcCCCcEEEEEee
Q 044808 227 DTCLYRTREDLFDLTLEASESKKFLFVKSK 256 (623)
Q Consensus 227 d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~ 256 (623)
..+.....+ ....+.|||||++++..+.
T Consensus 136 -~~i~~~~~~-~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 136 -KKISTFEHS-DATDVEWSPDGRYLATATT 163 (194)
T ss_pred -EEeeccccC-cEEEEEEcCCCCEEEEEEe
Confidence 234332222 2457899999999886543
No 133
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=98.01 E-value=0.0018 Score=62.73 Aligned_cols=193 Identities=11% Similarity=0.084 Sum_probs=110.0
Q ss_pred EEEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccC---ccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCc
Q 044808 150 YRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQ---GCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 150 ~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~---~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~ 225 (623)
..++...+|+||++..-+.-.+++++||+++|+....-.. .+-++++++|+ +++-.+.|. .+.++++-+..
T Consensus 64 H~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDk----Tiklwnt~g~c- 138 (315)
T KOG0279|consen 64 HFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDK----TIKLWNTLGVC- 138 (315)
T ss_pred eEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcc----eeeeeeecccE-
Confidence 4588899999999855555445999999999976542222 23369999999 555433332 35555554331
Q ss_pred ccEEEEeecCCceeEEEEEcCCC-cEEEEEeecceeeEEEEEECCCCCceeecCCCccc-eeE-EEEeeCCEEEEEeCCC
Q 044808 226 KDTCLYRTREDLFDLTLEASESK-KFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLG-IDM-FVSHRGNQFFIRRSDG 302 (623)
Q Consensus 226 ~d~lv~~~~~~~~~~~~~~S~Dg-~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~-~~~-~~~~dg~~ly~sn~~g 302 (623)
-..+.++....+..-+.|+|.. ..++++.+ ....|-+.|+.+-+ .+.-.....+ +.+ .++|||..+.--.+
T Consensus 139 -k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s--~DktvKvWnl~~~~-l~~~~~gh~~~v~t~~vSpDGslcasGgk-- 212 (315)
T KOG0279|consen 139 -KYTIHEDSHREWVSCVRFSPNESNPIIVSAS--WDKTVKVWNLRNCQ-LRTTFIGHSGYVNTVTVSPDGSLCASGGK-- 212 (315)
T ss_pred -EEEEecCCCcCcEEEEEEcCCCCCcEEEEcc--CCceEEEEccCCcc-hhhccccccccEEEEEECCCCCEEecCCC--
Confidence 1222222223455567899986 33343322 33456667887654 3333333333 233 58898764332223
Q ss_pred CCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCC
Q 044808 303 GFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPP 360 (623)
Q Consensus 303 ~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~ 360 (623)
...++..|++.++. +-.-+....|..+....++.++...-+ +.|.++++++
T Consensus 213 --dg~~~LwdL~~~k~---lysl~a~~~v~sl~fspnrywL~~at~--~sIkIwdl~~ 263 (315)
T KOG0279|consen 213 --DGEAMLWDLNEGKN---LYSLEAFDIVNSLCFSPNRYWLCAATA--TSIKIWDLES 263 (315)
T ss_pred --CceEEEEEccCCce---eEeccCCCeEeeEEecCCceeEeeccC--CceEEEeccc
Confidence 36788888876542 211222234556666666555554333 2388889885
No 134
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.01 E-value=0.00021 Score=72.42 Aligned_cols=193 Identities=12% Similarity=0.131 Sum_probs=105.9
Q ss_pred EEEeeeEECCCCCEE-EEEEeCceEEEEECCCCCcccc---ccCc-cceeEEecCC-eEEEEEeCCCCCCeEEEEECCCC
Q 044808 150 YRITAFKVSPNNKLV-AFRENCGTVCVIDSETGAPAEK---PIQG-CLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEE 223 (623)
Q Consensus 150 ~~l~~~~~SPDG~~l-A~~~~~~~l~v~dl~tg~~~~~---~i~~-~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~ 223 (623)
..+..+.||||.++| |.+.+. .+++||+.||+.... .... ..+-+|-||| +|+-...|. .++.+++...
T Consensus 270 ~~V~yi~wSPDdryLlaCg~~e-~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr----~i~~wdlDgn 344 (519)
T KOG0293|consen 270 QPVSYIMWSPDDRYLLACGFDE-VLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDR----TIIMWDLDGN 344 (519)
T ss_pred CceEEEEECCCCCeEEecCchH-heeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCC----cEEEecCCcc
Confidence 467789999999985 444444 699999999986542 1111 1248999999 765444332 5777777543
Q ss_pred CcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcccee-EEEEeeCCEEEEEeCCC
Q 044808 224 QSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGID-MFVSHRGNQFFIRRSDG 302 (623)
Q Consensus 224 ~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~-~~~~~dg~~ly~sn~~g 302 (623)
.. . -++.-...-...+++++||++++.... ...+.+++.++.. -+.+...+..+. ..++.+|+.++ .|-.
T Consensus 345 ~~-~--~W~gvr~~~v~dlait~Dgk~vl~v~~---d~~i~l~~~e~~~-dr~lise~~~its~~iS~d~k~~L-vnL~- 415 (519)
T KOG0293|consen 345 IL-G--NWEGVRDPKVHDLAITYDGKYVLLVTV---DKKIRLYNREARV-DRGLISEEQPITSFSISKDGKLAL-VNLQ- 415 (519)
T ss_pred hh-h--cccccccceeEEEEEcCCCcEEEEEec---ccceeeechhhhh-hhccccccCceeEEEEcCCCcEEE-EEcc-
Confidence 11 0 111111123456789999999887553 3567777776543 121222333332 34666554333 4432
Q ss_pred CCCeEEEEEeCCCCCceeeEEcCCCC-ceEeEEEEeC---CEEEEEEeeCCcceEEEEECCCCCC
Q 044808 303 GFHSDVLTCPVDNTFETTVLIPHRER-VRVEEVRLFA---DHIAVYELEEGLPKITTYCLPPVGE 363 (623)
Q Consensus 303 ~~~~~L~~~d~~~~~~~~~li~~~~d-~~i~~~~~~~---~~Lv~~~~~~g~~~l~v~~l~~~g~ 363 (623)
...+...|++.....+-...+... ..|. +.|+ +.++.+..+++ ++++++... |+
T Consensus 416 --~qei~LWDl~e~~lv~kY~Ghkq~~fiIr--SCFgg~~~~fiaSGSED~--kvyIWhr~s-gk 473 (519)
T KOG0293|consen 416 --DQEIHLWDLEENKLVRKYFGHKQGHFIIR--SCFGGGNDKFIASGSEDS--KVYIWHRIS-GK 473 (519)
T ss_pred --cCeeEEeecchhhHHHHhhcccccceEEE--eccCCCCcceEEecCCCc--eEEEEEccC-Cc
Confidence 123555566532211111222211 1222 1232 46788887775 589988775 55
No 135
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.00 E-value=7.1e-05 Score=74.96 Aligned_cols=130 Identities=21% Similarity=0.175 Sum_probs=83.8
Q ss_pred EEECCCCCeE-EEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCC---hhH
Q 044808 445 RAYASDGEEI-PISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKG---KQW 520 (623)
Q Consensus 445 ~~~s~dG~~i-~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G---~~~ 520 (623)
.+...||-.+ -.|..-|. +.+.|++|..||=-|+...+ |- +.....+.++||.|++.|.||-++-- ...
T Consensus 53 ~v~~pdg~~~~ldw~~~p~-----~~~~P~vVl~HGL~G~s~s~-y~-r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~ 125 (345)
T COG0429 53 RLETPDGGFIDLDWSEDPR-----AAKKPLVVLFHGLEGSSNSP-YA-RGLMRALSRRGWLVVVFHFRGCSGEANTSPRL 125 (345)
T ss_pred EEEcCCCCEEEEeeccCcc-----ccCCceEEEEeccCCCCcCH-HH-HHHHHHHHhcCCeEEEEecccccCCcccCcce
Confidence 3445566444 44533333 24569999999966665554 43 13345677789999999999965421 112
Q ss_pred HHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--eeeEEEecCCccchh
Q 044808 521 HENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPE--LFKVAVADVPSVDVL 590 (623)
Q Consensus 521 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~--~f~a~v~~~~~~d~~ 590 (623)
+. .....|+..+++||.+.+. +.++.++|.|.||.|.+.-+.+.-+ .-.|+++..--.|+.
T Consensus 126 yh-------~G~t~D~~~~l~~l~~~~~--~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~Dl~ 188 (345)
T COG0429 126 YH-------SGETEDIRFFLDWLKARFP--PRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFDLE 188 (345)
T ss_pred ec-------ccchhHHHHHHHHHHHhCC--CCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHHHH
Confidence 22 2344999999999999665 6899999999999655544545322 235555555555654
No 136
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=97.99 E-value=5.2e-05 Score=79.62 Aligned_cols=78 Identities=12% Similarity=0.013 Sum_probs=54.2
Q ss_pred HHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCc-EEEEEeChHHHHHHHHHHhCCCe
Q 044808 498 ILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDN-LCIEGGSAGGMLIGAVLNMRPEL 576 (623)
Q Consensus 498 ~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~l~~~~~~~~p~~ 576 (623)
|...+|.|+.+|.||.|+.- . ....+.|+.+.+..+++.- +-++ +.+.|+|+||++++.++.++|++
T Consensus 95 L~~~~~~Vi~~Dl~G~g~s~----~------~~~~~~~~a~dl~~ll~~l--~l~~~~~lvG~SmGG~vA~~~A~~~P~~ 162 (343)
T PRK08775 95 LDPARFRLLAFDFIGADGSL----D------VPIDTADQADAIALLLDAL--GIARLHAFVGYSYGALVGLQFASRHPAR 162 (343)
T ss_pred cCccccEEEEEeCCCCCCCC----C------CCCCHHHHHHHHHHHHHHc--CCCcceEEEEECHHHHHHHHHHHHChHh
Confidence 44568999999999864321 0 1123455555444444432 2235 57999999999999999999999
Q ss_pred eeEEEecCCcc
Q 044808 577 FKVAVADVPSV 587 (623)
Q Consensus 577 f~a~v~~~~~~ 587 (623)
++..|...+..
T Consensus 163 V~~LvLi~s~~ 173 (343)
T PRK08775 163 VRTLVVVSGAH 173 (343)
T ss_pred hheEEEECccc
Confidence 99888877643
No 137
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=0.0013 Score=69.17 Aligned_cols=197 Identities=13% Similarity=0.140 Sum_probs=119.1
Q ss_pred eeeEECCCCCEEEEEEeCceEEEEECCCCCccc---cccCccceeEEecCC-eEEEEEeCCCCCC-eEEEEECCCCCccc
Q 044808 153 TAFKVSPNNKLVAFRENCGTVCVIDSETGAPAE---KPIQGCLEFEWAGDE-AFLYTRRNAIAEP-QVWFHKLGEEQSKD 227 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~---~~i~~~~~~~WspDg-~l~y~~~d~~~~~-~v~~~~lgt~~~~d 227 (623)
.-++||.|+|++|-..-. .|.|++..+-..+. ..|+++.++.|||-+ -|+|.....+.-| ++-+..+-+.+.-+
T Consensus 309 P~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iR 387 (698)
T KOG2314|consen 309 PIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIR 387 (698)
T ss_pred ceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceee
Confidence 458999999999987654 57888776644443 256788889999999 6778876555556 77777776653211
Q ss_pred -EEEEeecCCceeEEEEEcCCCcEEEEEeecce---------eeEEEEEECCCCCceeecCCCcc-ceeEEEEeeCCEEE
Q 044808 228 -TCLYRTREDLFDLTLEASESKKFLFVKSKTKV---------TGFVYYFDVSRPETLWFLPPWHL-GIDMFVSHRGNQFF 296 (623)
Q Consensus 228 -~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~---------~s~l~~~dl~~~~~~~~l~~~~~-~~~~~~~~dg~~ly 296 (623)
.-+|.-. .+.+.|-.+|.||.+....+. +-+|+.++-.+- .+. ..+-.+ -+...|+|.|+.|.
T Consensus 388 t~nlfnVs----DckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pve-~velke~vi~FaWEP~gdkF~ 461 (698)
T KOG2314|consen 388 TKNLFNVS----DCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PVE-VVELKESVIAFAWEPHGDKFA 461 (698)
T ss_pred eccceeee----ccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cce-eeecchheeeeeeccCCCeEE
Confidence 0122211 133568899999999875422 124555543221 121 222222 23457899999999
Q ss_pred E-EeCCCCCCeEEEEEeCCCCCceee-EEcCCCCceEeE--EEEeCCEEEEEEeeCCcceEEEEECC
Q 044808 297 I-RRSDGGFHSDVLTCPVDNTFETTV-LIPHRERVRVEE--VRLFADHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 297 ~-sn~~g~~~~~L~~~d~~~~~~~~~-li~~~~d~~i~~--~~~~~~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
+ +......+.+.|.+..... +| +|..-+...... +++.+..+++.........+..+|.+
T Consensus 462 vi~g~~~k~tvsfY~~e~~~~---~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 462 VISGNTVKNTVSFYAVETNIK---KPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred EEEccccccceeEEEeecCCC---chhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 9 6654355667777654222 23 322222222233 44556778887777555678888876
No 138
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=97.98 E-value=1.9e-05 Score=80.43 Aligned_cols=96 Identities=19% Similarity=0.157 Sum_probs=67.1
Q ss_pred hhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHH-cCCCCCCcEEEEEeChHHHHHHHHHHh
Q 044808 494 SRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIK-SNYCSEDNLCIEGGSAGGMLIGAVLNM 572 (623)
Q Consensus 494 ~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~-~~~~d~~ri~i~G~S~GG~l~~~~~~~ 572 (623)
....|+++||+|+++||-|=|. .|.. +..-....-|.+.|++-+.. .|.....+++++|+|.||.-+++++..
T Consensus 18 ~l~~~L~~GyaVv~pDY~Glg~---~y~~---~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l 91 (290)
T PF03583_consen 18 FLAAWLARGYAVVAPDYEGLGT---PYLN---GRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAEL 91 (290)
T ss_pred HHHHHHHCCCEEEecCCCCCCC---cccC---cHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHH
Confidence 3578999999999999998544 3211 11111333444444444433 355455899999999999999988744
Q ss_pred ----CCCe---eeEEEecCCccchhhhhhC
Q 044808 573 ----RPEL---FKVAVADVPSVDVLTTILF 595 (623)
Q Consensus 573 ----~p~~---f~a~v~~~~~~d~~~~~~~ 595 (623)
.||+ +.++++..|..|+..++..
T Consensus 92 ~~~YApeL~~~l~Gaa~gg~~~dl~~~~~~ 121 (290)
T PF03583_consen 92 APSYAPELNRDLVGAAAGGPPADLAALLRA 121 (290)
T ss_pred hHHhCcccccceeEEeccCCccCHHHHHhc
Confidence 5776 7999999999999877654
No 139
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.97 E-value=7e-05 Score=73.22 Aligned_cols=54 Identities=22% Similarity=0.249 Sum_probs=45.0
Q ss_pred HHHHHHHHHHcCC-CCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccch
Q 044808 536 FIACADYLIKSNY-CSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDV 589 (623)
Q Consensus 536 ~~~~~~~l~~~~~-~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~ 589 (623)
+..-+.=++++.| +|++|.+|+|+|+||+.++.++..+|+.|.+.++..|-+=|
T Consensus 120 L~~~lkP~Ie~~y~~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y~~~SPSlWw 174 (264)
T COG2819 120 LTEQLKPFIEARYRTNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWW 174 (264)
T ss_pred HHHhhHHHHhcccccCcccceeeeecchhHHHHHHHhcCcchhceeeeecchhhh
Confidence 3345555566655 89999999999999999999999999999999999986543
No 140
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=97.96 E-value=0.0015 Score=68.40 Aligned_cols=199 Identities=15% Similarity=0.151 Sum_probs=114.1
Q ss_pred EEEeeeEECCCCCEEEEEEeCceEEEEECCCCC-ccccccC----ccceeEEecCC-eEEEEEeCCCCCC-eEEEEECCC
Q 044808 150 YRITAFKVSPNNKLVAFRENCGTVCVIDSETGA-PAEKPIQ----GCLEFEWAGDE-AFLYTRRNAIAEP-QVWFHKLGE 222 (623)
Q Consensus 150 ~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~-~~~~~i~----~~~~~~WspDg-~l~y~~~d~~~~~-~v~~~~lgt 222 (623)
+.+...++||.|-|+|-+-..++|+|||....+ .+..+++ .+..+.|+.|+ +++-+-.. +++- +++.++-|+
T Consensus 60 ~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEG-rerfg~~F~~DSG~ 138 (603)
T KOG0318|consen 60 HQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEG-RERFGHVFLWDSGN 138 (603)
T ss_pred ceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecC-ccceeEEEEecCCC
Confidence 456678999999999988555599999987644 3443333 23459999999 77765432 2222 444444332
Q ss_pred C---------------------------Cccc-EEEEeecC----------CceeEEEEEcCCCcEEEEEeecceeeEEE
Q 044808 223 E---------------------------QSKD-TCLYRTRE----------DLFDLTLEASESKKFLFVKSKTKVTGFVY 264 (623)
Q Consensus 223 ~---------------------------~~~d-~lv~~~~~----------~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~ 264 (623)
. ..+. +.+|+.+. ..|.-.+.+||||++. +++.+ ...++
T Consensus 139 SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~F-at~gs--Dgki~ 215 (603)
T KOG0318|consen 139 SVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRF-ATAGS--DGKIY 215 (603)
T ss_pred ccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeE-EEecC--CccEE
Confidence 1 1111 22344321 1233357899999874 33332 35788
Q ss_pred EEECCCCCceeecC--CCccceeE--EEEeeCCEEEE-EeCCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCC
Q 044808 265 YFDVSRPETLWFLP--PWHLGIDM--FVSHRGNQFFI-RRSDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFAD 339 (623)
Q Consensus 265 ~~dl~~~~~~~~l~--~~~~~~~~--~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~ 339 (623)
+.|-.+++....+- +...|-.| .|+||+.+|+- +-.. .-+|+-+..... ..+|.....-+-...+..|.++
T Consensus 216 iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDk---t~KIWdVs~~sl-v~t~~~~~~v~dqqvG~lWqkd 291 (603)
T KOG0318|consen 216 IYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADK---TIKIWDVSTNSL-VSTWPMGSTVEDQQVGCLWQKD 291 (603)
T ss_pred EEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCc---eEEEEEeeccce-EEEeecCCchhceEEEEEEeCC
Confidence 99988886222232 12223334 58899988877 4433 356766543322 3456544442223447778888
Q ss_pred EEEEEEeeCCcceEEEEECC
Q 044808 340 HIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 340 ~Lv~~~~~~g~~~l~v~~l~ 359 (623)
+|+.....+. |..++++
T Consensus 292 ~lItVSl~G~---in~ln~~ 308 (603)
T KOG0318|consen 292 HLITVSLSGT---INYLNPS 308 (603)
T ss_pred eEEEEEcCcE---EEEeccc
Confidence 8776665433 4555554
No 141
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=97.95 E-value=4.7e-05 Score=78.69 Aligned_cols=120 Identities=23% Similarity=0.304 Sum_probs=82.6
Q ss_pred EEEEE-eCCCccCCCCccEEEEEcCC-CCCCCCCCC-CchhhhHHHHHCCcEEEEEeccCCC--cCChhHHHcccccCCC
Q 044808 456 ISIVY-RKNRVKLDGSDPLLLFGYGS-YGLGPSSYS-NSIASRLTILDRGIIFAIAHVRGGD--EKGKQWHENGKLLNKR 530 (623)
Q Consensus 456 ~~l~~-~~~~~~~~~~~P~il~~~Gg-~~~~~~~~~-~~~~~~~~~~~~G~~v~~~~~RG~~--~~G~~~~~~~~~~~~~ 530 (623)
.|++. |.+. ++ +.-|+|+|.||| |.....|.. ........+++ ...+++.||.-.. +. +..-+
T Consensus 108 ~Wlvk~P~~~-~p-k~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~-~~SILvLDYsLt~~~~~---------~~~yP 175 (374)
T PF10340_consen 108 YWLVKAPNRF-KP-KSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLP-EVSILVLDYSLTSSDEH---------GHKYP 175 (374)
T ss_pred EEEEeCCccc-CC-CCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcC-CCeEEEEeccccccccC---------CCcCc
Confidence 57776 6554 33 335999999998 555544421 10022333444 6699999998654 22 23446
Q ss_pred chHhHHHHHHHHHH-HcCCCCCCcEEEEEeChHHHHHHHHHHh--C--C-CeeeEEEecCCccchh
Q 044808 531 NTFTDFIACADYLI-KSNYCSEDNLCIEGGSAGGMLIGAVLNM--R--P-ELFKVAVADVPSVDVL 590 (623)
Q Consensus 531 ~~~~D~~~~~~~l~-~~~~~d~~ri~i~G~S~GG~l~~~~~~~--~--p-~~f~a~v~~~~~~d~~ 590 (623)
..+.++++.-++|+ ++|. ++|.+||-||||.|++..+.. + + -.=+.+|+..|-+++.
T Consensus 176 tQL~qlv~~Y~~Lv~~~G~---~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 176 TQLRQLVATYDYLVESEGN---KNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred hHHHHHHHHHHHHHhccCC---CeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 78899999999999 5664 689999999999999887643 1 1 1237899999999987
No 142
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=97.94 E-value=0.00074 Score=67.87 Aligned_cols=159 Identities=11% Similarity=0.168 Sum_probs=95.2
Q ss_pred eeEECCCCCEEEEEEeCc--eEEEEECCCCCcccc---cc-Cccc--eeEEecCCeEEEEEeCCCCCC-eEEEEECCCCC
Q 044808 154 AFKVSPNNKLVAFRENCG--TVCVIDSETGAPAEK---PI-QGCL--EFEWAGDEAFLYTRRNAIAEP-QVWFHKLGEEQ 224 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~--~l~v~dl~tg~~~~~---~i-~~~~--~~~WspDg~l~y~~~d~~~~~-~v~~~~lgt~~ 224 (623)
...+.|||++|... |-+ .|++++++.|+..+- .+ +++. -++|.|+++++|....-+ .. .+|-++-..+.
T Consensus 149 ~a~~tP~~~~l~v~-DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~-stV~v~~y~~~~g~ 226 (346)
T COG2706 149 SANFTPDGRYLVVP-DLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELN-STVDVLEYNPAVGK 226 (346)
T ss_pred eeeeCCCCCEEEEe-ecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccC-CEEEEEEEcCCCce
Confidence 46899999987654 444 899999998876542 12 2333 399999999999875422 22 55655544332
Q ss_pred cccEEEE---eec--CCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeec--CCCccce---eEEEEeeCCE
Q 044808 225 SKDTCLY---RTR--EDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFL--PPWHLGI---DMFVSHRGNQ 294 (623)
Q Consensus 225 ~~d~lv~---~~~--~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l--~~~~~~~---~~~~~~dg~~ 294 (623)
-+..... .+. ...+...+.+|+||++|++.-...+.=.+|.++..++. +..+ ++- ++. ...+++.|+.
T Consensus 227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~-L~~~~~~~t-eg~~PR~F~i~~~g~~ 304 (346)
T COG2706 227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK-LELVGITPT-EGQFPRDFNINPSGRF 304 (346)
T ss_pred EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE-EEEEEEecc-CCcCCccceeCCCCCE
Confidence 1111111 111 12234568899999998863222222345666666664 3222 211 121 2457777776
Q ss_pred EEEEeCCCCCCeEEEEEeCCCCC
Q 044808 295 FFIRRSDGGFHSDVLTCPVDNTF 317 (623)
Q Consensus 295 ly~sn~~g~~~~~L~~~d~~~~~ 317 (623)
|++.+.+ ..+..+++.|-+++.
T Consensus 305 Liaa~q~-sd~i~vf~~d~~TG~ 326 (346)
T COG2706 305 LIAANQK-SDNITVFERDKETGR 326 (346)
T ss_pred EEEEccC-CCcEEEEEEcCCCce
Confidence 6667766 568899999887764
No 143
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=97.94 E-value=4.6e-05 Score=75.38 Aligned_cols=98 Identities=14% Similarity=0.049 Sum_probs=67.6
Q ss_pred cEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCC
Q 044808 472 PLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSE 551 (623)
Q Consensus 472 P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 551 (623)
|.||++||.++... .|. .....| ++|.|+.+|.||-|..... ....+++..+-+.-+++.- .-
T Consensus 3 p~vvllHG~~~~~~--~w~--~~~~~l--~~~~vi~~D~~G~G~S~~~---------~~~~~~~~~~~l~~~l~~~--~~ 65 (242)
T PRK11126 3 PWLVFLHGLLGSGQ--DWQ--PVGEAL--PDYPRLYIDLPGHGGSAAI---------SVDGFADVSRLLSQTLQSY--NI 65 (242)
T ss_pred CEEEEECCCCCChH--HHH--HHHHHc--CCCCEEEecCCCCCCCCCc---------cccCHHHHHHHHHHHHHHc--CC
Confidence 67899999766542 455 444444 4799999999997754321 1124555555444444432 34
Q ss_pred CcEEEEEeChHHHHHHHHHHhCCC-eeeEEEecCCc
Q 044808 552 DNLCIEGGSAGGMLIGAVLNMRPE-LFKVAVADVPS 586 (623)
Q Consensus 552 ~ri~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~~~ 586 (623)
+++.+.|+|+||.+++.++.++|+ +++++|...+.
T Consensus 66 ~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl~~~~ 101 (242)
T PRK11126 66 LPYWLVGYSLGGRIAMYYACQGLAGGLCGLIVEGGN 101 (242)
T ss_pred CCeEEEEECHHHHHHHHHHHhCCcccccEEEEeCCC
Confidence 799999999999999999988865 48888776543
No 144
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=97.92 E-value=0.00091 Score=69.72 Aligned_cols=156 Identities=12% Similarity=0.188 Sum_probs=86.6
Q ss_pred eeEECCCCCEEEEEEeCc-eEEEEECCCCCccc----c--cc-Cc--cceeEEecCCeEEEEEeCCCCCCeEEEEECC--
Q 044808 154 AFKVSPNNKLVAFRENCG-TVCVIDSETGAPAE----K--PI-QG--CLEFEWAGDEAFLYTRRNAIAEPQVWFHKLG-- 221 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~----~--~i-~~--~~~~~WspDg~l~y~~~d~~~~~~v~~~~lg-- 221 (623)
...++|||++|..+.... .|+|+|+.+...+. . .+ .+ ...++|+|||+++|+..... ..|..+++.
T Consensus 130 ~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~--~~v~v~~~~~~ 207 (330)
T PRK11028 130 SANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN--SSVDVWQLKDP 207 (330)
T ss_pred EeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC--CEEEEEEEeCC
Confidence 457999999986655443 89999998743221 0 11 12 12489999997777764321 245555554
Q ss_pred CCCcccEEEE--e---e--cCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-ceeec--CCCc-cceeEEEEe
Q 044808 222 EEQSKDTCLY--R---T--REDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-TLWFL--PPWH-LGIDMFVSH 290 (623)
Q Consensus 222 t~~~~d~lv~--~---~--~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l--~~~~-~~~~~~~~~ 290 (623)
++.. .++. . . ..+.+...+.++|||++|++. +...+.|.+++++... .++.+ .+.. ......+++
T Consensus 208 ~~~~--~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~--~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~ 283 (330)
T PRK11028 208 HGEI--ECVQTLDMMPADFSDTRWAADIHITPDGRHLYAC--DRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDH 283 (330)
T ss_pred CCCE--EEEEEEecCCCcCCCCccceeEEECCCCCEEEEe--cCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECC
Confidence 2221 1111 1 1 112344457789999998874 3334566666654322 12211 1111 111245789
Q ss_pred eCCEEEEEeCCCCCCeEEEEEeCCCC
Q 044808 291 RGNQFFIRRSDGGFHSDVLTCPVDNT 316 (623)
Q Consensus 291 dg~~ly~sn~~g~~~~~L~~~d~~~~ 316 (623)
+|++||+++.. .....|+.++.+++
T Consensus 284 dg~~l~va~~~-~~~v~v~~~~~~~g 308 (330)
T PRK11028 284 SGKYLIAAGQK-SHHISVYEIDGETG 308 (330)
T ss_pred CCCEEEEEEcc-CCcEEEEEEcCCCC
Confidence 99988886654 34566777665443
No 145
>PTZ00421 coronin; Provisional
Probab=97.91 E-value=0.0059 Score=66.91 Aligned_cols=199 Identities=9% Similarity=0.006 Sum_probs=109.3
Q ss_pred EEeeeEECC-CCCEEEEEEeCceEEEEECCCCCccc------cccC----ccceeEEecCC-eEEEEEeCCCCCCeEEEE
Q 044808 151 RITAFKVSP-NNKLVAFRENCGTVCVIDSETGAPAE------KPIQ----GCLEFEWAGDE-AFLYTRRNAIAEPQVWFH 218 (623)
Q Consensus 151 ~l~~~~~SP-DG~~lA~~~~~~~l~v~dl~tg~~~~------~~i~----~~~~~~WspDg-~l~y~~~d~~~~~~v~~~ 218 (623)
.+..+.||| |+++||.+...++|++||+.++.... ..+. .+..++|+|++ .++.+...+. .|.++
T Consensus 77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg---tVrIW 153 (493)
T PTZ00421 77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM---VVNVW 153 (493)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC---EEEEE
Confidence 477889999 89999988877799999998764211 0122 22349999987 5666543221 58888
Q ss_pred ECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccce--eEEEEeeCCEEE
Q 044808 219 KLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGI--DMFVSHRGNQFF 296 (623)
Q Consensus 219 ~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~--~~~~~~dg~~ly 296 (623)
++.++.. ...+.. +......+.|++||+.|+..+. ...|.+.|+.++.....+....... ...|.++++.++
T Consensus 154 Dl~tg~~--~~~l~~-h~~~V~sla~spdG~lLatgs~---Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~iv 227 (493)
T PTZ00421 154 DVERGKA--VEVIKC-HSDQITSLEWNLDGSLLCTTSK---DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLII 227 (493)
T ss_pred ECCCCeE--EEEEcC-CCCceEEEEEECCCCEEEEecC---CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEE
Confidence 8877632 223332 2234557889999998764332 3568888988775222222222111 223556656554
Q ss_pred EEeCCCCCCeEEEEEeCCCCCceeeEEcCCCCceEe--EEEEeCCEEEEEEeeCCcceEEEEECCC
Q 044808 297 IRRSDGGFHSDVLTCPVDNTFETTVLIPHRERVRVE--EVRLFADHIAVYELEEGLPKITTYCLPP 360 (623)
Q Consensus 297 ~sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~--~~~~~~~~Lv~~~~~~g~~~l~v~~l~~ 360 (623)
.+.........|..+|+.+.......+..+....+. .++..++.|++....++ .|++|++..
T Consensus 228 t~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg--~Iriwdl~~ 291 (493)
T PTZ00421 228 TLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEG--NIRCFELMN 291 (493)
T ss_pred EEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCC--eEEEEEeeC
Confidence 322111223457777776543211122211111111 22233455555543344 477788764
No 146
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.89 E-value=0.0074 Score=59.62 Aligned_cols=192 Identities=14% Similarity=0.116 Sum_probs=112.5
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccc-c--CccceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCccc
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKP-I--QGCLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSKD 227 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~-i--~~~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~d 227 (623)
.+..+.++|++++|+.+...+.|+++|+.+++.+... . ..+..+.|++++.++++...+ ..++.+++.+.. .
T Consensus 53 ~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~~--~ 127 (289)
T cd00200 53 PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRD---KTIKVWDVETGK--C 127 (289)
T ss_pred ceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCC---CeEEEEECCCcE--E
Confidence 3467899999999999887669999999987654321 1 123459999998777665411 158888887542 2
Q ss_pred EEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcccee-EEEEeeCCEEEE-EeCCCCCC
Q 044808 228 TCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGID-MFVSHRGNQFFI-RRSDGGFH 305 (623)
Q Consensus 228 ~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~-~~~~~dg~~ly~-sn~~g~~~ 305 (623)
...+. ........+.++|++++++... ....+++.|+.++.....+......+. ..+.+++..+++ +. +
T Consensus 128 ~~~~~-~~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-~---- 198 (289)
T cd00200 128 LTTLR-GHTDWVNSVAFSPDGTFVASSS---QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS-D---- 198 (289)
T ss_pred EEEec-cCCCcEEEEEEcCcCCEEEEEc---CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC-C----
Confidence 22333 1222345678899988776543 234688888876541222222221222 346777777777 55 3
Q ss_pred eEEEEEeCCCCCceeeEEcCCCCceEeEEEEeC-CEEEEEEeeCCcceEEEEECCC
Q 044808 306 SDVLTCPVDNTFETTVLIPHRERVRVEEVRLFA-DHIAVYELEEGLPKITTYCLPP 360 (623)
Q Consensus 306 ~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~-~~Lv~~~~~~g~~~l~v~~l~~ 360 (623)
..|..+++........+..+. . .+..+.+.. +.+++....++ .++++++..
T Consensus 199 ~~i~i~d~~~~~~~~~~~~~~-~-~i~~~~~~~~~~~~~~~~~~~--~i~i~~~~~ 250 (289)
T cd00200 199 GTIKLWDLSTGKCLGTLRGHE-N-GVNSVAFSPDGYLLASGSEDG--TIRVWDLRT 250 (289)
T ss_pred CcEEEEECCCCceecchhhcC-C-ceEEEEEcCCCcEEEEEcCCC--cEEEEEcCC
Confidence 246666665443211121222 1 355666665 45555555454 477888764
No 147
>PLN02578 hydrolase
Probab=97.87 E-value=6.1e-05 Score=79.44 Aligned_cols=95 Identities=12% Similarity=-0.030 Sum_probs=63.6
Q ss_pred cEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchH----hHHHHHHHHHHHcC
Q 044808 472 PLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTF----TDFIACADYLIKSN 547 (623)
Q Consensus 472 P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~----~D~~~~~~~l~~~~ 547 (623)
|.||++||-.+.. ..|. ..... +.++|.|+.+|+||.|....... .-+. +|+.+.++.+.
T Consensus 87 ~~vvliHG~~~~~--~~w~--~~~~~-l~~~~~v~~~D~~G~G~S~~~~~--------~~~~~~~a~~l~~~i~~~~--- 150 (354)
T PLN02578 87 LPIVLIHGFGASA--FHWR--YNIPE-LAKKYKVYALDLLGFGWSDKALI--------EYDAMVWRDQVADFVKEVV--- 150 (354)
T ss_pred CeEEEECCCCCCH--HHHH--HHHHH-HhcCCEEEEECCCCCCCCCCccc--------ccCHHHHHHHHHHHHHHhc---
Confidence 5578899854322 2233 33333 45689999999999776543211 1122 34444444332
Q ss_pred CCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCC
Q 044808 548 YCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVP 585 (623)
Q Consensus 548 ~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 585 (623)
.+++.++|+|+||+++..++.++|++++++|...|
T Consensus 151 ---~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lvLv~~ 185 (354)
T PLN02578 151 ---KEPAVLVGNSLGGFTALSTAVGYPELVAGVALLNS 185 (354)
T ss_pred ---cCCeEEEEECHHHHHHHHHHHhChHhcceEEEECC
Confidence 36899999999999999999999999998887654
No 148
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=97.87 E-value=3.3e-05 Score=75.96 Aligned_cols=115 Identities=19% Similarity=0.190 Sum_probs=76.9
Q ss_pred CCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCc--------------CChhHHHcc--cccCC-
Q 044808 467 LDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDE--------------KGKQWHENG--KLLNK- 529 (623)
Q Consensus 467 ~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~--------------~G~~~~~~~--~~~~~- 529 (623)
+++++|++|+-||=-+.. .-|+ .....|+++||+|+++..|-... +-++|..-- ..+-+
T Consensus 114 k~~k~PvvvFSHGLggsR--t~YS--a~c~~LAShG~VVaavEHRD~SA~~Ty~~~~~~~n~~lveq~~~ir~v~~~eke 189 (399)
T KOG3847|consen 114 KNDKYPVVVFSHGLGGSR--TLYS--AYCTSLASHGFVVAAVEHRDRSACWTYVLKEKHENEPLVEQWIKIRLVEANEKE 189 (399)
T ss_pred CCCCccEEEEecccccch--hhHH--HHhhhHhhCceEEEEeecccCcceeEEEecccccCCcccccceEeeeeccCcee
Confidence 367899999999943332 3567 77889999999999999997542 112332210 00001
Q ss_pred ---Cc-----hHhHHHHHHHHHHH---------------------cCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEE
Q 044808 530 ---RN-----TFTDFIACADYLIK---------------------SNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVA 580 (623)
Q Consensus 530 ---~~-----~~~D~~~~~~~l~~---------------------~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~ 580 (623)
.| -...|..|+.-|.+ ++-+|..+++|+|+|+||-.+++....+ ..|+|+
T Consensus 190 f~irNeqv~~R~~Ec~~aL~il~~i~~g~~~~~~L~g~~~~~~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~-t~Frca 268 (399)
T KOG3847|consen 190 FHIRNEQVGQRAQECQKALKILEQINDGGTPDNVLPGNNSDLEQLKGNLDTSQAAVIGHSFGGATSIASSSSH-TDFRCA 268 (399)
T ss_pred EEeeCHHHHHHHHHHHHHHHHHHHhhcCCCchhcccCccccHHHHhcchhhhhhhheeccccchhhhhhhccc-cceeee
Confidence 11 23444444444432 2347888999999999999999988876 469999
Q ss_pred EecCCc
Q 044808 581 VADVPS 586 (623)
Q Consensus 581 v~~~~~ 586 (623)
|+.-+-
T Consensus 269 I~lD~W 274 (399)
T KOG3847|consen 269 IALDAW 274 (399)
T ss_pred eeeeee
Confidence 997543
No 149
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.87 E-value=0.0011 Score=73.89 Aligned_cols=151 Identities=14% Similarity=0.049 Sum_probs=89.7
Q ss_pred EEeeeEECCCCCEEEEEEe------Cc--eEEEEECCCCCccccccC--ccceeEEecCC-eEEEEEeCCC-------CC
Q 044808 151 RITAFKVSPNNKLVAFREN------CG--TVCVIDSETGAPAEKPIQ--GCLEFEWAGDE-AFLYTRRNAI-------AE 212 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~------~~--~l~v~dl~tg~~~~~~i~--~~~~~~WspDg-~l~y~~~d~~-------~~ 212 (623)
.++.+++||||+++||... .. +||+.+.. |+..+ ... ....+.|+||| .++|...... ..
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~-lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~ 428 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQ-VLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA 428 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Cccee-eecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence 4678999999999999983 22 89999973 33322 112 22349999998 6777653211 11
Q ss_pred C-eEEEEECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEE---EECCCCC----ceeecCCCccc-
Q 044808 213 P-QVWFHKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYY---FDVSRPE----TLWFLPPWHLG- 283 (623)
Q Consensus 213 ~-~v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~---~dl~~~~----~~~~l~~~~~~- 283 (623)
. ++|...+..+... . ..+ .-...+.|||||++|++... ..||+ +...++. .++.+.+...+
T Consensus 429 ~gql~~~~vd~ge~~--~--~~~--g~Issl~wSpDG~RiA~i~~----g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~ 498 (591)
T PRK13616 429 TGQLARTPVDASAVA--S--RVP--GPISELQLSRDGVRAAMIIG----GKVYLAVVEQTEDGQYALTNPREVGPGLGDT 498 (591)
T ss_pred CceEEEEeccCchhh--h--ccC--CCcCeEEECCCCCEEEEEEC----CEEEEEEEEeCCCCceeecccEEeecccCCc
Confidence 2 6776666554321 1 111 12446789999999998763 36777 5555553 12224333322
Q ss_pred -eeEEEEeeCCEEEE-EeCCCCCCeEEEEEeCCCCC
Q 044808 284 -IDMFVSHRGNQFFI-RRSDGGFHSDVLTCPVDNTF 317 (623)
Q Consensus 284 -~~~~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~ 317 (623)
....|..+ +.|++ ++.. +..++.++++...
T Consensus 499 ~~~l~W~~~-~~L~V~~~~~---~~~v~~v~vDG~~ 530 (591)
T PRK13616 499 AVSLDWRTG-DSLVVGRSDP---EHPVWYVNLDGSN 530 (591)
T ss_pred cccceEecC-CEEEEEecCC---CCceEEEecCCcc
Confidence 12245554 45778 6643 3458888887553
No 150
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.0037 Score=68.27 Aligned_cols=194 Identities=10% Similarity=0.080 Sum_probs=113.4
Q ss_pred cEEEeeeEECCCCCEEEEEEeCceEEEEECC-CCCccccccC----ccceeEEecCCeEEEEE-eCCCCCCeEEEEECCC
Q 044808 149 NYRITAFKVSPNNKLVAFRENCGTVCVIDSE-TGAPAEKPIQ----GCLEFEWAGDEAFLYTR-RNAIAEPQVWFHKLGE 222 (623)
Q Consensus 149 ~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~-tg~~~~~~i~----~~~~~~WspDg~l~y~~-~d~~~~~~v~~~~lgt 222 (623)
...+..+.|||||++|+-+.++.+|+|||+. .+..+. ++. .+..++|+|+|.++... .|. .|+++++.+
T Consensus 203 ~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~-~l~gH~~~v~~~~f~p~g~~i~Sgs~D~----tvriWd~~~ 277 (456)
T KOG0266|consen 203 TRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK-TLKGHSTYVTSVAFSPDGNLLVSGSDDG----TVRIWDVRT 277 (456)
T ss_pred ccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEE-EecCCCCceEEEEecCCCCEEEEecCCC----cEEEEeccC
Confidence 4567889999999998888877799999994 444443 232 23459999999555544 343 478888887
Q ss_pred CCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-c-eeecCCCccc--ee-EEEEeeCCEEEE
Q 044808 223 EQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-T-LWFLPPWHLG--ID-MFVSHRGNQFFI 297 (623)
Q Consensus 223 ~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~-~~~l~~~~~~--~~-~~~~~dg~~ly~ 297 (623)
+.. ...+... ......+++++||++|+.. + ....|.+.|+.++. . .+.+...... +. ..++++++.++.
T Consensus 278 ~~~--~~~l~~h-s~~is~~~f~~d~~~l~s~--s-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~ 351 (456)
T KOG0266|consen 278 GEC--VRKLKGH-SDGISGLAFSPDGNLLVSA--S-YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLS 351 (456)
T ss_pred CeE--EEeeecc-CCceEEEEECCCCCEEEEc--C-CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEE
Confidence 532 2333322 2345667899999997753 2 25678888998875 1 1233333322 12 246788877776
Q ss_pred -EeCCCCCCeEEEEEeCCCCCceeeEEcCCCC-ceEeEEE-EeCCEEEEEEeeCCcceEEEEECCC
Q 044808 298 -RRSDGGFHSDVLTCPVDNTFETTVLIPHRER-VRVEEVR-LFADHIAVYELEEGLPKITTYCLPP 360 (623)
Q Consensus 298 -sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d-~~i~~~~-~~~~~Lv~~~~~~g~~~l~v~~l~~ 360 (623)
+... .|...++..+........+... ..+.... ..+..++++...++. |+++++.+
T Consensus 352 ~~~d~-----~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~--v~~~~~~s 410 (456)
T KOG0266|consen 352 ASLDR-----TLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGS--VYVWDSSS 410 (456)
T ss_pred ecCCC-----eEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCce--EEEEeCCc
Confidence 4432 3444444433221112222222 1121222 124556666666654 77777775
No 151
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=97.86 E-value=0.00036 Score=71.06 Aligned_cols=149 Identities=15% Similarity=0.143 Sum_probs=93.0
Q ss_pred EEEeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc---ccCccceeEEecCCeEEEEEe-CCCCCCeEEEEECCCCCc
Q 044808 150 YRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK---PIQGCLEFEWAGDEAFLYTRR-NAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 150 ~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~---~i~~~~~~~WspDg~l~y~~~-d~~~~~~v~~~~lgt~~~ 225 (623)
..++.++|.|+|++|+-++-..+.++||+.|+..+-. .-.++.+++|-+||.++-+.. |... +| +++.|+.
T Consensus 262 ~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~--Rv--WDlRtgr- 336 (459)
T KOG0272|consen 262 ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLG--RV--WDLRTGR- 336 (459)
T ss_pred hhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchh--he--eecccCc-
Confidence 5788899999999999998777999999999986531 122445699999998877643 3221 34 5666663
Q ss_pred ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcccee-EEEEeeCCEEEE-EeCCCC
Q 044808 226 KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGID-MFVSHRGNQFFI-RRSDGG 303 (623)
Q Consensus 226 ~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~-~~~~~dg~~ly~-sn~~g~ 303 (623)
-++++++ +-.-.+++.|||+|-.|+- .++.++..||-+..... +-.+..+..-+. .-++|..+.+++ ...++
T Consensus 337 -~im~L~g-H~k~I~~V~fsPNGy~lAT-gs~Dnt~kVWDLR~r~~--ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~- 410 (459)
T KOG0272|consen 337 -CIMFLAG-HIKEILSVAFSPNGYHLAT-GSSDNTCKVWDLRMRSE--LYTIPAHSNLVSQVKYSPQEGYFLVTASYDN- 410 (459)
T ss_pred -EEEEecc-cccceeeEeECCCceEEee-cCCCCcEEEeeeccccc--ceecccccchhhheEecccCCeEEEEcccCc-
Confidence 2555554 4334567899999977653 33444555665443332 222222222111 235677777888 55552
Q ss_pred CCeEEEE
Q 044808 304 FHSDVLT 310 (623)
Q Consensus 304 ~~~~L~~ 310 (623)
..+|+.
T Consensus 411 -t~kiWs 416 (459)
T KOG0272|consen 411 -TVKIWS 416 (459)
T ss_pred -ceeeec
Confidence 456665
No 152
>PRK07581 hypothetical protein; Validated
Probab=97.86 E-value=4.9e-05 Score=79.65 Aligned_cols=107 Identities=13% Similarity=0.034 Sum_probs=65.6
Q ss_pred CccEEEEEcCCCCCCCCCCCCchhh---hHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCC-----chH-hHHHHHH
Q 044808 470 SDPLLLFGYGSYGLGPSSYSNSIAS---RLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKR-----NTF-TDFIACA 540 (623)
Q Consensus 470 ~~P~il~~~Gg~~~~~~~~~~~~~~---~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~-----~~~-~D~~~~~ 540 (623)
+.|+||..||..+.... |. .. ...|...+|.|+.+|.||.|........ ...... ..+ +|+.+-.
T Consensus 40 ~~~~vll~~~~~~~~~~--~~--~~~~~~~~l~~~~~~vi~~D~~G~G~S~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 113 (339)
T PRK07581 40 KDNAILYPTWYSGTHQD--NE--WLIGPGRALDPEKYFIIIPNMFGNGLSSSPSNT--PAPFNAARFPHVTIYDNVRAQH 113 (339)
T ss_pred CCCEEEEeCCCCCCccc--ch--hhccCCCccCcCceEEEEecCCCCCCCCCCCCC--CCCCCCCCCCceeHHHHHHHHH
Confidence 34777776665433322 22 11 1245567999999999997754321100 000111 123 4444434
Q ss_pred HHHHH-cCCCCCCcE-EEEEeChHHHHHHHHHHhCCCeeeEEEecCC
Q 044808 541 DYLIK-SNYCSEDNL-CIEGGSAGGMLIGAVLNMRPELFKVAVADVP 585 (623)
Q Consensus 541 ~~l~~-~~~~d~~ri-~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 585 (623)
..|.+ .++ +++ .+.|+|+||+.+..++.++|++++..|...+
T Consensus 114 ~~l~~~lgi---~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli~~ 157 (339)
T PRK07581 114 RLLTEKFGI---ERLALVVGWSMGAQQTYHWAVRYPDMVERAAPIAG 157 (339)
T ss_pred HHHHHHhCC---CceEEEEEeCHHHHHHHHHHHHCHHHHhhheeeec
Confidence 44554 454 685 6899999999999999999999988887644
No 153
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=97.84 E-value=0.0001 Score=77.58 Aligned_cols=147 Identities=20% Similarity=0.220 Sum_probs=106.6
Q ss_pred CCCCceEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCc-h-hhhHHHHHCCcEEEEEeccC
Q 044808 435 DESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNS-I-ASRLTILDRGIIFAIAHVRG 512 (623)
Q Consensus 435 ~~~~~~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~-~-~~~~~~~~~G~~v~~~~~RG 512 (623)
....|.+|...+++.||. |-..--.|... ++.|+|+..||=..++...--+. . ...-.|+++||-|-.-|.||
T Consensus 42 ~~~gy~~E~h~V~T~DgY-iL~lhRIp~~~----~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~LadaGYDVWLgN~RG 116 (403)
T KOG2624|consen 42 EKYGYPVEEHEVTTEDGY-ILTLHRIPRGK----KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADAGYDVWLGNNRG 116 (403)
T ss_pred HHcCCceEEEEEEccCCe-EEEEeeecCCC----CCCCcEEEeeccccccccceecCccccHHHHHHHcCCceeeecCcC
Confidence 445678999999999998 44333444431 67899999999766654322120 0 22346788999999999999
Q ss_pred CCcCChhHHHcccc-c-------CCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC---eeeEEE
Q 044808 513 GDEKGKQWHENGKL-L-------NKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPE---LFKVAV 581 (623)
Q Consensus 513 ~~~~G~~~~~~~~~-~-------~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~---~f~a~v 581 (623)
..|.++-...... . +..-...|+-|.++|+.+. +..++|.-.|+|.|+....+++..+|+ ..+..+
T Consensus 117 -n~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~--T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~ 193 (403)
T KOG2624|consen 117 -NTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEK--TGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFI 193 (403)
T ss_pred -cccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHh--ccccceEEEEEEccchhheehhcccchhhhhhheee
Confidence 6676654332221 1 1223668999999998875 467999999999999999999999887 578899
Q ss_pred ecCCccch
Q 044808 582 ADVPSVDV 589 (623)
Q Consensus 582 ~~~~~~d~ 589 (623)
+.+|++=+
T Consensus 194 aLAP~~~~ 201 (403)
T KOG2624|consen 194 ALAPAAFP 201 (403)
T ss_pred eecchhhh
Confidence 99998833
No 154
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.83 E-value=0.0073 Score=63.80 Aligned_cols=244 Identities=14% Similarity=0.104 Sum_probs=116.4
Q ss_pred eeeEECCCCCEEEEEEeCc-eEEEEECCCCCccccccC-----------ccceeEEecCC-eEEEEEeCCCCCCeEEEEE
Q 044808 153 TAFKVSPNNKLVAFRENCG-TVCVIDSETGAPAEKPIQ-----------GCLEFEWAGDE-AFLYTRRNAIAEPQVWFHK 219 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~~~i~-----------~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~ 219 (623)
.++.+||||++|+.+.... ++.|+|.+|.+.+.. |+ ...++.-+|++ .|++.-.+ .++||..+
T Consensus 81 ~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~-I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd---~~~I~vVd 156 (369)
T PF02239_consen 81 RGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKT-IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD---TGEIWVVD 156 (369)
T ss_dssp EEEEE--TTTEEEEEEEETTEEEEEETTT--EEEE-EE--EE-TTTS---EEEEEE-SSSSEEEEEETT---TTEEEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCceeEeccccccceee-cccccccccccCCCceeEEecCCCCEEEEEEcc---CCeEEEEE
Confidence 3589999999998776544 999999999987752 11 11235567877 56555433 23799998
Q ss_pred CCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCC--Cc--cceeEEEEeeC-CE
Q 044808 220 LGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPP--WH--LGIDMFVSHRG-NQ 294 (623)
Q Consensus 220 lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~--~~--~~~~~~~~~dg-~~ 294 (623)
..... ...+-..+-..+..+..++|||+|+++..+. .+.+-++|+.+++ ...+.+ +. .+....+-|-+ +.
T Consensus 157 y~d~~--~~~~~~i~~g~~~~D~~~dpdgry~~va~~~--sn~i~viD~~~~k-~v~~i~~g~~p~~~~~~~~php~~g~ 231 (369)
T PF02239_consen 157 YSDPK--NLKVTTIKVGRFPHDGGFDPDGRYFLVAANG--SNKIAVIDTKTGK-LVALIDTGKKPHPGPGANFPHPGFGP 231 (369)
T ss_dssp TTTSS--CEEEEEEE--TTEEEEEE-TTSSEEEEEEGG--GTEEEEEETTTTE-EEEEEE-SSSBEETTEEEEEETTTEE
T ss_pred ecccc--ccceeeecccccccccccCcccceeeecccc--cceeEEEeeccce-EEEEeeccccccccccccccCCCcce
Confidence 76652 2222111223455667899999998775433 4578888888765 322221 11 11112232323 33
Q ss_pred EEEEeCCCCCCeEEEEEeCCC-CCceee----EEcC-CCCceEeEEEEeCCEEEEEEe-eCCcceEEEEECCCCCCCccc
Q 044808 295 FFIRRSDGGFHSDVLTCPVDN-TFETTV----LIPH-RERVRVEEVRLFADHIAVYEL-EEGLPKITTYCLPPVGEPLKT 367 (623)
Q Consensus 295 ly~sn~~g~~~~~L~~~d~~~-~~~~~~----li~~-~~d~~i~~~~~~~~~Lv~~~~-~~g~~~l~v~~l~~~g~~~~~ 367 (623)
++.+...+.....++-.+... -....| -++. .... .-...+.+++|++... ......|.++|..+ -+.
T Consensus 232 vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~gl-Fi~thP~s~~vwvd~~~~~~~~~v~viD~~t-l~~--- 306 (369)
T PF02239_consen 232 VWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGL-FIKTHPDSRYVWVDTFLNPDADTVQVIDKKT-LKV--- 306 (369)
T ss_dssp EEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCG-TEE---
T ss_pred EEeeccccceecccccCCccccchhhcCeEEEEEECCCCcc-eeecCCCCccEEeeccCCCCCceEEEEECcC-cce---
Confidence 333443312111223222221 111223 1111 1111 1122344567777622 22356788888774 111
Q ss_pred ccCCceeecCCCce--EEEeeeccccCCcCCceEEEEeecCCCCCeEEEEECCCCcE
Q 044808 368 LQGGRTVDIFKSEL--CISRIHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTGIS 422 (623)
Q Consensus 368 l~~~~~i~~p~~~~--~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~ 422 (623)
...+....+ .+ -..++.+++.++++.-.. -.++..||..+.+.
T Consensus 307 -----~~~i~~~~~~~~~-----h~ef~~dG~~v~vS~~~~--~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 307 -----VKTITPGPGKRVV-----HMEFNPDGKEVWVSVWDG--NGAIVVYDAKTLKE 351 (369)
T ss_dssp -----EE-HHHHHT--EE-----EEEE-TTSSEEEEEEE----TTEEEEEETTTTEE
T ss_pred -----eEEEeccCCCcEe-----ccEECCCCCEEEEEEecC--CCEEEEEECCCcEE
Confidence 111111111 12 123466889888865433 33999999887664
No 155
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=97.82 E-value=3.5e-05 Score=74.88 Aligned_cols=55 Identities=27% Similarity=0.223 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccch
Q 044808 534 TDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDV 589 (623)
Q Consensus 534 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~ 589 (623)
+=|..|++||.+++.++++||||+|.|-||-+++.+++..| .++|+|+.+|-.=+
T Consensus 4 Eyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~-~i~avVa~~ps~~~ 58 (213)
T PF08840_consen 4 EYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP-QISAVVAISPSSVV 58 (213)
T ss_dssp HHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS-SEEEEEEES--SB-
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC-CccEEEEeCCceeE
Confidence 45778999999999999999999999999999999999998 57999998875433
No 156
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.82 E-value=0.00052 Score=70.62 Aligned_cols=199 Identities=14% Similarity=0.152 Sum_probs=113.4
Q ss_pred CcEEEeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc-ccCcc-ceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCc
Q 044808 148 ENYRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK-PIQGC-LEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 148 ~~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~-~i~~~-~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~ 225 (623)
+.-++..+.+|||+++||+.-..+.|+++-..|++.+.. .+++. .++.|+.||+.++..... .+||.+++++...
T Consensus 302 e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~---GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 302 EEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT---GEVYVWNLRQNSC 378 (514)
T ss_pred ccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC---ceEEEEecCCcce
Confidence 334677899999999999998877999999999987642 45554 459999999555554321 1799999997632
Q ss_pred ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCC-CCceeecCCC---cccee-EEEEeeCCEEEE-Ee
Q 044808 226 KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSR-PETLWFLPPW---HLGID-MFVSHRGNQFFI-RR 299 (623)
Q Consensus 226 ~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~-~~~~~~l~~~---~~~~~-~~~~~dg~~ly~-sn 299 (623)
.-.|.....-.-.+++.|++|+|++..+.++ --.||-.+..- ...++++..- ...+. ..|.|+...|.+ |+
T Consensus 379 --~~rf~D~G~v~gts~~~S~ng~ylA~GS~~G-iVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 379 --LHRFVDDGSVHGTSLCISLNGSYLATGSDSG-IVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred --EEEEeecCccceeeeeecCCCceEEeccCcc-eEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence 2223322222334677899999988765443 23344322111 1123332211 11122 358899888888 77
Q ss_pred CCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeC-CEEEEEEeeCCcceEE
Q 044808 300 SDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFA-DHIAVYELEEGLPKIT 354 (623)
Q Consensus 300 ~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~-~~Lv~~~~~~g~~~l~ 354 (623)
.. ....+|+-++--+ -..+|-....+=..+..++... ...+...++.|...|+
T Consensus 456 ~~-knalrLVHvPS~T-VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 456 VK-KNALRLVHVPSCT-VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLF 509 (514)
T ss_pred cc-ccceEEEecccee-eeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeE
Confidence 65 3356776665221 1234422211111123333332 3344455566654444
No 157
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=97.81 E-value=0.0021 Score=63.34 Aligned_cols=186 Identities=15% Similarity=0.116 Sum_probs=102.2
Q ss_pred eeeEECCCCCEEEEEEeCceEEEEECCCCCcc---ccccCccceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcccEE
Q 044808 153 TAFKVSPNNKLVAFRENCGTVCVIDSETGAPA---EKPIQGCLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSKDTC 229 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~---~~~i~~~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~d~l 229 (623)
...+||+.|.+||.+...+.|.|+|+.|-.+- .-.+..+.+++||+||+++.++..+. .+-.+++-.+..-.+.
T Consensus 27 ~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~---si~lwDl~~gs~l~ri 103 (405)
T KOG1273|consen 27 ECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDW---SIKLWDLLKGSPLKRI 103 (405)
T ss_pred ceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCc---eeEEEeccCCCceeEE
Confidence 35699999999999999889999999886532 22333455799999997776664321 5666777665322223
Q ss_pred EEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccce-eE-----EEEeeCCEEEE-EeCCC
Q 044808 230 LYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGI-DM-----FVSHRGNQFFI-RRSDG 302 (623)
Q Consensus 230 v~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~-~~-----~~~~dg~~ly~-sn~~g 302 (623)
.|. .| ...+.|.|-.+-.++..-- ...-++++..++. .+.|-...++. .+ .++..|+.+|. +.++
T Consensus 104 rf~--sp--v~~~q~hp~k~n~~va~~~--~~sp~vi~~s~~~-h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKG- 175 (405)
T KOG1273|consen 104 RFD--SP--VWGAQWHPRKRNKCVATIM--EESPVVIDFSDPK-HSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKG- 175 (405)
T ss_pred Ecc--Cc--cceeeeccccCCeEEEEEe--cCCcEEEEecCCc-eeeccCCCccccccccccccccCCCCEEEEecCcc-
Confidence 332 22 2334566655444443311 1124566666654 33332222221 11 25667777776 5543
Q ss_pred CCCeEEEEEeCCCCCceee-EEcCCCCceEeEEEEe--CCEEEEEEeeCCcceEEEEEC
Q 044808 303 GFHSDVLTCPVDNTFETTV-LIPHRERVRVEEVRLF--ADHIAVYELEEGLPKITTYCL 358 (623)
Q Consensus 303 ~~~~~L~~~d~~~~~~~~~-li~~~~d~~i~~~~~~--~~~Lv~~~~~~g~~~l~v~~l 358 (623)
+|..++.++.+...| -+.. -..|..+.+. ++.|++...+.. |++|++
T Consensus 176 ----kllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRv---IR~ye~ 225 (405)
T KOG1273|consen 176 ----KLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRV---IRTYEI 225 (405)
T ss_pred ----eEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCce---EEEEeh
Confidence 577777665443223 1111 1124444433 456666655443 555554
No 158
>PRK10349 carboxylesterase BioH; Provisional
Probab=97.80 E-value=9.9e-05 Score=73.86 Aligned_cols=94 Identities=13% Similarity=0.095 Sum_probs=64.9
Q ss_pred cEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCC
Q 044808 472 PLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSE 551 (623)
Q Consensus 472 P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 551 (623)
|.||++||..+.. ..|. .....| ...|.|+.+|.||-|.... .....++++. +.+++.. .
T Consensus 14 ~~ivllHG~~~~~--~~w~--~~~~~L-~~~~~vi~~Dl~G~G~S~~---------~~~~~~~~~~---~~l~~~~---~ 73 (256)
T PRK10349 14 VHLVLLHGWGLNA--EVWR--CIDEEL-SSHFTLHLVDLPGFGRSRG---------FGALSLADMA---EAVLQQA---P 73 (256)
T ss_pred CeEEEECCCCCCh--hHHH--HHHHHH-hcCCEEEEecCCCCCCCCC---------CCCCCHHHHH---HHHHhcC---C
Confidence 5689999954333 2455 444444 4669999999999764321 1123444443 4444433 4
Q ss_pred CcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCC
Q 044808 552 DNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVP 585 (623)
Q Consensus 552 ~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 585 (623)
+++.+.|+|.||+++..++.++|++.+..|...+
T Consensus 74 ~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lili~~ 107 (256)
T PRK10349 74 DKAIWLGWSLGGLVASQIALTHPERVQALVTVAS 107 (256)
T ss_pred CCeEEEEECHHHHHHHHHHHhChHhhheEEEecC
Confidence 7899999999999999999999999988886654
No 159
>PTZ00420 coronin; Provisional
Probab=97.80 E-value=0.012 Score=65.36 Aligned_cols=198 Identities=11% Similarity=0.031 Sum_probs=106.3
Q ss_pred EEeeeEECCC-CCEEEEEEeCceEEEEECCCCCc-cc---c---ccC----ccceeEEecCC-eEEEEEeCCCCCCeEEE
Q 044808 151 RITAFKVSPN-NKLVAFRENCGTVCVIDSETGAP-AE---K---PIQ----GCLEFEWAGDE-AFLYTRRNAIAEPQVWF 217 (623)
Q Consensus 151 ~l~~~~~SPD-G~~lA~~~~~~~l~v~dl~tg~~-~~---~---~i~----~~~~~~WspDg-~l~y~~~d~~~~~~v~~ 217 (623)
.+..+.|||+ +++||-+...+.|+|||+.++.. .. + .+. .+..++|+|++ .++.+...+. .|.+
T Consensus 76 ~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~Dg---tIrI 152 (568)
T PTZ00420 76 SILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDS---FVNI 152 (568)
T ss_pred CEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCC---eEEE
Confidence 5778899997 78888887777999999986532 11 0 111 23359999999 5555543221 5778
Q ss_pred EECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcccee--EE----EEee
Q 044808 218 HKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGID--MF----VSHR 291 (623)
Q Consensus 218 ~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~--~~----~~~d 291 (623)
+++.+++. ...+.. +.-...+.|++||+.|+... ....|.++|+.++.....+..+..... .. ++++
T Consensus 153 WDl~tg~~--~~~i~~--~~~V~SlswspdG~lLat~s---~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d 225 (568)
T PTZ00420 153 WDIENEKR--AFQINM--PKKLSSLKWNIKGNLLSGTC---VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD 225 (568)
T ss_pred EECCCCcE--EEEEec--CCcEEEEEECCCCCEEEEEe---cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence 88877642 222222 22345688999999876432 234688889988762222322222211 11 2355
Q ss_pred CCEEEEEeCCCCCCeEEEEEeCCCCCceeeEEcCCC--CceEeEEEEeCCEEEEEEeeCCcceEEEEECCC
Q 044808 292 GNQFFIRRSDGGFHSDVLTCPVDNTFETTVLIPHRE--RVRVEEVRLFADHIAVYELEEGLPKITTYCLPP 360 (623)
Q Consensus 292 g~~ly~sn~~g~~~~~L~~~d~~~~~~~~~li~~~~--d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~ 360 (623)
++.|+.+..++.....|...|+.+.....-.+..+. ...+-.+....+.+++....++ .|++|++..
T Consensus 226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~--tIr~~e~~~ 294 (568)
T PTZ00420 226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDG--NCRYYQHSL 294 (568)
T ss_pred CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCC--eEEEEEccC
Confidence 554444333312223577777764321111222211 1111122222355666665554 467777653
No 160
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.80 E-value=0.00015 Score=72.83 Aligned_cols=94 Identities=12% Similarity=0.128 Sum_probs=64.5
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccC----ccceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcc
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQ----GCLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSK 226 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~----~~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~ 226 (623)
-+..+.+||||++||-++-...|++||-.+|+.+. .+. .+..++||.|++|+.....++ .+..+++.+.
T Consensus 369 lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~la-sfRGHv~~VYqvawsaDsRLlVS~SkDs---TLKvw~V~tk--- 441 (480)
T KOG0271|consen 369 LVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLA-SFRGHVAAVYQVAWSADSRLLVSGSKDS---TLKVWDVRTK--- 441 (480)
T ss_pred heeeEEECCCccEEEEeecccceeeeeCCCcchhh-hhhhccceeEEEEeccCccEEEEcCCCc---eEEEEEeeee---
Confidence 45678999999999999766689999999999886 333 234599999999888764322 3444455443
Q ss_pred cEEEEeec-CCceeEEEEEcCCCcEEE
Q 044808 227 DTCLYRTR-EDLFDLTLEASESKKFLF 252 (623)
Q Consensus 227 d~lv~~~~-~~~~~~~~~~S~Dg~~l~ 252 (623)
.+.++-+ +.+-...+.|||||+.++
T Consensus 442 -Kl~~DLpGh~DEVf~vDwspDG~rV~ 467 (480)
T KOG0271|consen 442 -KLKQDLPGHADEVFAVDWSPDGQRVA 467 (480)
T ss_pred -eecccCCCCCceEEEEEecCCCceee
Confidence 2333322 112233568999999864
No 161
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=97.79 E-value=9.9e-05 Score=78.59 Aligned_cols=112 Identities=19% Similarity=0.134 Sum_probs=73.0
Q ss_pred ccEEEEEcCCCCCCCC--C---------CCCchhhh---HHHHHCCcEEEEEeccCCC--cCChhHHHc--ccc---cCC
Q 044808 471 DPLLLFGYGSYGLGPS--S---------YSNSIASR---LTILDRGIIFAIAHVRGGD--EKGKQWHEN--GKL---LNK 529 (623)
Q Consensus 471 ~P~il~~~Gg~~~~~~--~---------~~~~~~~~---~~~~~~G~~v~~~~~RG~~--~~G~~~~~~--~~~---~~~ 529 (623)
.|.||++||-.+.... + .|. ... ..+...+|.|+.+|.+|++ ..|...... +.. ...
T Consensus 48 ~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~--~~~~~~~~l~~~~~~vi~~Dl~G~~~~s~~~~~~~~~~~~~~~~~~~ 125 (379)
T PRK00175 48 SNAVLICHALTGDHHVAGPHSPDDPKPGWWD--NMVGPGKPIDTDRYFVICSNVLGGCKGSTGPSSINPDTGKPYGSDFP 125 (379)
T ss_pred CCEEEEeCCcCCchhhcccccccCCCCcchh--hccCCCCccCccceEEEeccCCCCCCCCCCCCCCCCCCCCcccCCCC
Confidence 5899999997665531 0 122 111 1344679999999999842 222211000 000 011
Q ss_pred CchHhHHHHHHHHHHHcCCCCCCc-EEEEEeChHHHHHHHHHHhCCCeeeEEEecCCc
Q 044808 530 RNTFTDFIACADYLIKSNYCSEDN-LCIEGGSAGGMLIGAVLNMRPELFKVAVADVPS 586 (623)
Q Consensus 530 ~~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 586 (623)
..+++|+.+.+.-+++.- .-++ ..+.|+|+||.++..++.++|++.+.+|...+.
T Consensus 126 ~~~~~~~~~~~~~~l~~l--~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl~~~~ 181 (379)
T PRK00175 126 VITIRDWVRAQARLLDAL--GITRLAAVVGGSMGGMQALEWAIDYPDRVRSALVIASS 181 (379)
T ss_pred cCCHHHHHHHHHHHHHHh--CCCCceEEEEECHHHHHHHHHHHhChHhhhEEEEECCC
Confidence 357888888777777652 2256 489999999999999999999999988887654
No 162
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=97.78 E-value=0.00027 Score=73.43 Aligned_cols=137 Identities=20% Similarity=0.177 Sum_probs=90.2
Q ss_pred EeeeEEECCCCCeEEEEEEEeCCCcc--CCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcC--
Q 044808 441 TESKRAYASDGEEIPISIVYRKNRVK--LDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEK-- 516 (623)
Q Consensus 441 ~~~~~~~s~dG~~i~~~l~~~~~~~~--~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~-- 516 (623)
-++.-++.+||-.+-.=.+.+.+... .++..|++|.+||=.+++....-. ........+||-+++.|.||-++-
T Consensus 93 y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr--~lv~~a~~~G~r~VVfN~RG~~g~~L 170 (409)
T KOG1838|consen 93 YTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVR--HLVHEAQRKGYRVVVFNHRGLGGSKL 170 (409)
T ss_pred ceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHH--HHHHHHHhCCcEEEEECCCCCCCCcc
Confidence 35556667788777765455544301 135679999999977766552222 233445557999999999994331
Q ss_pred -ChhHHHcccccCCCchHhHHHHHHHHHHHc-CCCCCCcEEEEEeChHHHHHHHHHHhCCC--eeeEEEecCCccch
Q 044808 517 -GKQWHENGKLLNKRNTFTDFIACADYLIKS-NYCSEDNLCIEGGSAGGMLIGAVLNMRPE--LFKVAVADVPSVDV 589 (623)
Q Consensus 517 -G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~-~~~d~~ri~i~G~S~GG~l~~~~~~~~p~--~f~a~v~~~~~~d~ 589 (623)
-...+. ...-.|+.++++++.++ +. .++.++|.|.||.|...-+++.-+ ..-||++..--.|.
T Consensus 171 tTpr~f~-------ag~t~Dl~~~v~~i~~~~P~---a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~ 237 (409)
T KOG1838|consen 171 TTPRLFT-------AGWTEDLREVVNHIKKRYPQ---APLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDL 237 (409)
T ss_pred CCCceee-------cCCHHHHHHHHHHHHHhCCC---CceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchh
Confidence 111222 23458999999999875 43 379999999999999888877543 23455555544564
No 163
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=97.77 E-value=0.00011 Score=73.02 Aligned_cols=134 Identities=19% Similarity=0.160 Sum_probs=94.0
Q ss_pred EeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCc-CChh
Q 044808 441 TESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDE-KGKQ 519 (623)
Q Consensus 441 ~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~-~G~~ 519 (623)
-++.++++.||.+|....+-......+++ .-+|+-..|-- +|-...-...=++.||.|+-.|.-|.+| -|.-
T Consensus 214 G~R~kiks~dgneiDtmF~d~r~n~~~ng-q~LvIC~EGNA------GFYEvG~m~tP~~lgYsvLGwNhPGFagSTG~P 286 (517)
T KOG1553|consen 214 GQRLKIKSSDGNEIDTMFLDGRPNQSGNG-QDLVICFEGNA------GFYEVGVMNTPAQLGYSVLGWNHPGFAGSTGLP 286 (517)
T ss_pred CeEEEEeecCCcchhheeecCCCCCCCCC-ceEEEEecCCc------cceEeeeecChHHhCceeeccCCCCccccCCCC
Confidence 46788999999999987665543212233 34555555532 1210011234467899999999888544 3322
Q ss_pred HHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchh
Q 044808 520 WHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVL 590 (623)
Q Consensus 520 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~ 590 (623)
.-.++..-..+++++.+..=-.-++.|.++|||-||+-++|++..+||. ||+|..+-|=|++
T Consensus 287 --------~p~n~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPdV-kavvLDAtFDDll 348 (517)
T KOG1553|consen 287 --------YPVNTLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPDV-KAVVLDATFDDLL 348 (517)
T ss_pred --------CcccchHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCCc-eEEEeecchhhhh
Confidence 2345666667788888875444579999999999999999999999996 9999999998886
No 164
>PRK11071 esterase YqiA; Provisional
Probab=97.77 E-value=0.00011 Score=70.16 Aligned_cols=91 Identities=19% Similarity=0.125 Sum_probs=61.7
Q ss_pred cEEEEEcCCCCCCCCCCCCchhh-h-HHHHH--CCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcC
Q 044808 472 PLLLFGYGSYGLGPSSYSNSIAS-R-LTILD--RGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSN 547 (623)
Q Consensus 472 P~il~~~Gg~~~~~~~~~~~~~~-~-~~~~~--~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 547 (623)
|.||++||-.++. . .|. .. . ..+.. .+|.|..+|.+|. | .+..+.++.++++-
T Consensus 2 p~illlHGf~ss~-~-~~~--~~~~~~~l~~~~~~~~v~~~dl~g~---~----------------~~~~~~l~~l~~~~ 58 (190)
T PRK11071 2 STLLYLHGFNSSP-R-SAK--ATLLKNWLAQHHPDIEMIVPQLPPY---P----------------ADAAELLESLVLEH 58 (190)
T ss_pred CeEEEECCCCCCc-c-hHH--HHHHHHHHHHhCCCCeEEeCCCCCC---H----------------HHHHHHHHHHHHHc
Confidence 7899999943333 2 233 22 2 23333 3899999999974 2 24555666666542
Q ss_pred CCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchh
Q 044808 548 YCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVL 590 (623)
Q Consensus 548 ~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~ 590 (623)
+.+++.+.|+|.||++++.++.++|. + +|...|..+..
T Consensus 59 --~~~~~~lvG~S~Gg~~a~~~a~~~~~--~-~vl~~~~~~~~ 96 (190)
T PRK11071 59 --GGDPLGLVGSSLGGYYATWLSQCFML--P-AVVVNPAVRPF 96 (190)
T ss_pred --CCCCeEEEEECHHHHHHHHHHHHcCC--C-EEEECCCCCHH
Confidence 23589999999999999999999884 3 45667777754
No 165
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.76 E-value=0.0031 Score=68.78 Aligned_cols=196 Identities=15% Similarity=0.181 Sum_probs=112.5
Q ss_pred cEEEeeeEECCCCCEEEEEEeCceEEEEECCCCC--ccccccC----ccceeEEecCCeEEEEEeCCCCCCeEEEEECCC
Q 044808 149 NYRITAFKVSPNNKLVAFRENCGTVCVIDSETGA--PAEKPIQ----GCLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGE 222 (623)
Q Consensus 149 ~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~--~~~~~i~----~~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt 222 (623)
..++....+||||+++|.+.....++++++.+++ .+. .+. .+..++|+|||+++.+..++. +++.+++..
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~-~l~~h~~~v~~~~fs~d~~~l~s~s~D~---tiriwd~~~ 234 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLR-ELSGHTRGVSDVAFSPDGSYLLSGSDDK---TLRIWDLKD 234 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhc-cccccccceeeeEECCCCcEEEEecCCc---eEEEeeccC
Confidence 4456678999999999999776689999987776 332 222 334599999997555554332 577788733
Q ss_pred CCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeE-EEEeeCCEEEEEeCC
Q 044808 223 EQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDM-FVSHRGNQFFIRRSD 301 (623)
Q Consensus 223 ~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~-~~~~dg~~ly~sn~~ 301 (623)
... -..++. .+..+...+.++|+|+.|+- .. ....|.+.|+.+++..+.+....+++.. .+.++|..|+....+
T Consensus 235 ~~~-~~~~l~-gH~~~v~~~~f~p~g~~i~S-gs--~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d 309 (456)
T KOG0266|consen 235 DGR-NLKTLK-GHSTYVTSVAFSPDGNLLVS-GS--DDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD 309 (456)
T ss_pred CCe-EEEEec-CCCCceEEEEecCCCCEEEE-ec--CCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence 211 122333 45556677899999955443 22 2356777788776523344445545443 566776655543223
Q ss_pred CCCCeEEEEEeCCCCCce-eeEEcCCCCc-eEeEEEE--eCCEEEEEEeeCCcceEEEEECCC
Q 044808 302 GGFHSDVLTCPVDNTFET-TVLIPHRERV-RVEEVRL--FADHIAVYELEEGLPKITTYCLPP 360 (623)
Q Consensus 302 g~~~~~L~~~d~~~~~~~-~~li~~~~d~-~i~~~~~--~~~~Lv~~~~~~g~~~l~v~~l~~ 360 (623)
..|...|+.++... .-.+...... .+..+.. .+++++.... ++ .+.++++..
T Consensus 310 ----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~-d~--~~~~w~l~~ 365 (456)
T KOG0266|consen 310 ----GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL-DR--TLKLWDLRS 365 (456)
T ss_pred ----ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC-CC--eEEEEEccC
Confidence 35666777665421 0122222222 2333433 3345554443 32 366667764
No 166
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=97.76 E-value=0.00081 Score=66.10 Aligned_cols=195 Identities=12% Similarity=0.111 Sum_probs=105.7
Q ss_pred EeeeEECCCCCEEEEEEeCceEEEEECCCCCcccccc----------Ccc-ceeEEecCCe-EEEEEeCCCCCCeEEEEE
Q 044808 152 ITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPI----------QGC-LEFEWAGDEA-FLYTRRNAIAEPQVWFHK 219 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i----------~~~-~~~~WspDg~-l~y~~~d~~~~~~v~~~~ 219 (623)
+...++||||++|+-++-.+-|-|||.-+|+...+.- +.+ -.+.||.|+. ++-.+.|. +|..++
T Consensus 216 ~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG----kIKvWr 291 (508)
T KOG0275|consen 216 VECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG----KIKVWR 291 (508)
T ss_pred hhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC----cEEEEE
Confidence 4567999999999998877789999999998765311 111 1366777763 33222221 455555
Q ss_pred CCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccce-eEEEEeeCCEEEE-
Q 044808 220 LGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGI-DMFVSHRGNQFFI- 297 (623)
Q Consensus 220 lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~-~~~~~~dg~~ly~- 297 (623)
+.|++.- .-|+..+..-...+.+|.|+..|+-.+. ...+.+--+..|+.++.+..+..-+ +..+.++|.+++-
T Consensus 292 i~tG~Cl--RrFdrAHtkGvt~l~FSrD~SqiLS~sf---D~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 292 IETGQCL--RRFDRAHTKGVTCLSFSRDNSQILSASF---DQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EecchHH--HHhhhhhccCeeEEEEccCcchhhcccc---cceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 6566431 1244333222345678999998764322 2334444555554222222222111 1246778777665
Q ss_pred EeCCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeC---CEEEEEEeeCCcceEEEEECCCCCCCc
Q 044808 298 RRSDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFA---DHIAVYELEEGLPKITTYCLPPVGEPL 365 (623)
Q Consensus 298 sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~---~~Lv~~~~~~g~~~l~v~~l~~~g~~~ 365 (623)
+..+ ..+++ +.++.+.....-+...|..+..+.+.. .++++..+.+ .++++++. |..+
T Consensus 367 SsDg---tvkvW--~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsn---tv~imn~q--GQvV 427 (508)
T KOG0275|consen 367 SSDG---TVKVW--HGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSN---TVYIMNMQ--GQVV 427 (508)
T ss_pred cCCc---cEEEe--cCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCC---eEEEEecc--ceEE
Confidence 4433 34444 333332111122333455566666543 4666666544 47888887 6543
No 167
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=97.73 E-value=0.00014 Score=76.99 Aligned_cols=102 Identities=11% Similarity=0.004 Sum_probs=66.0
Q ss_pred ccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCC
Q 044808 471 DPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCS 550 (623)
Q Consensus 471 ~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 550 (623)
.|.||++||.++.. ..|. .....| ..+|.|+.+|.||-|..... .....+++++.+.+.-++++ ..
T Consensus 88 gp~lvllHG~~~~~--~~w~--~~~~~L-~~~~~via~Dl~G~G~S~~~-------~~~~~~~~~~a~~l~~~l~~--l~ 153 (360)
T PLN02679 88 GPPVLLVHGFGASI--PHWR--RNIGVL-AKNYTVYAIDLLGFGASDKP-------PGFSYTMETWAELILDFLEE--VV 153 (360)
T ss_pred CCeEEEECCCCCCH--HHHH--HHHHHH-hcCCEEEEECCCCCCCCCCC-------CCccccHHHHHHHHHHHHHH--hc
Confidence 37889999965433 1344 444444 56899999999997653210 00123445555444433332 12
Q ss_pred CCcEEEEEeChHHHHHHHHHH-hCCCeeeEEEecCCc
Q 044808 551 EDNLCIEGGSAGGMLIGAVLN-MRPELFKVAVADVPS 586 (623)
Q Consensus 551 ~~ri~i~G~S~GG~l~~~~~~-~~p~~f~a~v~~~~~ 586 (623)
.+++.+.|+|.||+++..++. .+|+++++.|...+.
T Consensus 154 ~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LVLi~~~ 190 (360)
T PLN02679 154 QKPTVLIGNSVGSLACVIAASESTRDLVRGLVLLNCA 190 (360)
T ss_pred CCCeEEEEECHHHHHHHHHHHhcChhhcCEEEEECCc
Confidence 369999999999999887665 479999988876653
No 168
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=97.69 E-value=0.00011 Score=71.51 Aligned_cols=78 Identities=22% Similarity=0.108 Sum_probs=63.0
Q ss_pred cEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEe
Q 044808 503 IIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVA 582 (623)
Q Consensus 503 ~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~ 582 (623)
|-|+++|.||.|.-... ..........+|+.+.++.+++.--+ +++.++|+|+||.++..++.++|++.+++|+
T Consensus 1 f~vi~~d~rG~g~S~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH----WDPDFPDYTTDDLAADLEALREALGI--KKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp EEEEEEECTTSTTSSSC----CGSGSCTHCHHHHHHHHHHHHHHHTT--SSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred CEEEEEeCCCCCCCCCC----ccCCcccccHHHHHHHHHHHHHHhCC--CCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 57899999998764421 11234456789999999999885334 3499999999999999999999999999999
Q ss_pred cCCc
Q 044808 583 DVPS 586 (623)
Q Consensus 583 ~~~~ 586 (623)
..++
T Consensus 75 ~~~~ 78 (230)
T PF00561_consen 75 ISPP 78 (230)
T ss_dssp ESES
T ss_pred Eeee
Confidence 9885
No 169
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=97.69 E-value=0.00071 Score=66.86 Aligned_cols=138 Identities=17% Similarity=0.160 Sum_probs=85.0
Q ss_pred eEECCCCCEEEEEEeCceEEEEECCCCCcccc--ccCccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCcccEEEE
Q 044808 155 FKVSPNNKLVAFRENCGTVCVIDSETGAPAEK--PIQGCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQSKDTCLY 231 (623)
Q Consensus 155 ~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~--~i~~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~ 231 (623)
..+||+|++||...+- .+.|+|.+|-+..+. -++.+..+.|+.|+ .++-..+. +|.|..+.+..+ +-..-.
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk---~~~vqvwsl~Qp--ew~ckI 87 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYK---DPKVQVWSLVQP--EWYCKI 87 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeec---cceEEEEEeecc--eeEEEe
Confidence 4899999999999877 799999998876642 23445569999998 55444432 345666777543 222223
Q ss_pred eecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeEEEEeeCCEEEE-EeCC
Q 044808 232 RTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDMFVSHRGNQFFI-RRSD 301 (623)
Q Consensus 232 ~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~~~~~dg~~ly~-sn~~ 301 (623)
++... -...+.||||||+|+..+.-.-.-.||-++...+- ..-.+...--.|.+.+||....+ +.++
T Consensus 88 deg~a-gls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~--~~~~pK~~~kg~~f~~dg~f~ai~sRrD 155 (447)
T KOG4497|consen 88 DEGQA-GLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY--LLPHPKTNVKGYAFHPDGQFCAILSRRD 155 (447)
T ss_pred ccCCC-cceeeeECCCcceEeeeecceeEEEEEEeccceeE--EecccccCceeEEECCCCceeeeeeccc
Confidence 33322 24567899999999876543333334444333221 11112221123678888888888 7776
No 170
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=97.68 E-value=0.0016 Score=67.32 Aligned_cols=140 Identities=9% Similarity=0.140 Sum_probs=95.2
Q ss_pred eEECCCCCEEEEEEeCc-eEEEEECCCCCccc--cccCccceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcccEEEE
Q 044808 155 FKVSPNNKLVAFRENCG-TVCVIDSETGAPAE--KPIQGCLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSKDTCLY 231 (623)
Q Consensus 155 ~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~--~~i~~~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~ 231 (623)
-+++-|++-++.+...+ .|-|+|..+|++.. ..+.++..+.-++||+++...++ +-++|..++.++.. + +.
T Consensus 365 ~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd---r~el~vididngnv--~-~i 438 (668)
T COG4946 365 RRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND---RFELWVIDIDNGNV--R-LI 438 (668)
T ss_pred EEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcC---ceEEEEEEecCCCe--e-Ee
Confidence 45666666666666555 89999999998543 23445556788999976666643 33899999998842 3 33
Q ss_pred eecCCceeEEEEEcCCCcEEEEEeecc-eeeEEEEEECCCCCceeec-CCCccceeEEEEeeCCEEEE-EeCC
Q 044808 232 RTREDLFDLTLEASESKKFLFVKSKTK-VTGFVYYFDVSRPETLWFL-PPWHLGIDMFVSHRGNQFFI-RRSD 301 (623)
Q Consensus 232 ~~~~~~~~~~~~~S~Dg~~l~i~s~~~-~~s~l~~~dl~~~~~~~~l-~~~~~~~~~~~~~dg~~ly~-sn~~ 301 (623)
+....+...++.|+|+++||++.--+. -+..|.+.|+.+++ .-.+ ++........|++++..||+ +++.
T Consensus 439 dkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K-iy~vTT~ta~DfsPaFD~d~ryLYfLs~Rs 510 (668)
T COG4946 439 DKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK-IYDVTTPTAYDFSPAFDPDGRYLYFLSARS 510 (668)
T ss_pred cccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe-EEEecCCcccccCcccCCCCcEEEEEeccc
Confidence 433344667889999999998854332 35788899998876 3333 33322222358999999999 8864
No 171
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=97.68 E-value=0.0042 Score=59.41 Aligned_cols=153 Identities=13% Similarity=0.197 Sum_probs=87.6
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc-ccC----ccceeEEecCCeEEEEEeCCC---------------
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK-PIQ----GCLEFEWAGDEAFLYTRRNAI--------------- 210 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~-~i~----~~~~~~WspDg~l~y~~~d~~--------------- 210 (623)
.+..+.++||++.||.+... .|+++|+.++..-+. +++ ++..+.|--||+..|+..++.
T Consensus 42 qVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~ 120 (311)
T KOG0315|consen 42 QVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRN 120 (311)
T ss_pred ceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchh
Confidence 35678999999999988665 799999999876432 232 333467777777666654320
Q ss_pred ----------------------CCC-eEEEEECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEE
Q 044808 211 ----------------------AEP-QVWFHKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFD 267 (623)
Q Consensus 211 ----------------------~~~-~v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~d 267 (623)
.+. .|+.+++++......++ .|++ .+.-++.+-|||++++. .++++ .+|+.+
T Consensus 121 ~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li-Pe~~-~~i~sl~v~~dgsml~a-~nnkG--~cyvW~ 195 (311)
T KOG0315|consen 121 YQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI-PEDD-TSIQSLTVMPDGSMLAA-ANNKG--NCYVWR 195 (311)
T ss_pred ccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-CCCC-cceeeEEEcCCCcEEEE-ecCCc--cEEEEE
Confidence 012 45666666543322222 2222 34456788999999764 45544 445555
Q ss_pred CCCCC---ceeecCCCc--cc--eeEEEEeeCCEEEE-EeCCCCCCeEEEEEe
Q 044808 268 VSRPE---TLWFLPPWH--LG--IDMFVSHRGNQFFI-RRSDGGFHSDVLTCP 312 (623)
Q Consensus 268 l~~~~---~~~~l~~~~--~~--~~~~~~~dg~~ly~-sn~~g~~~~~L~~~d 312 (623)
+-+.. .+..+.+-. .+ ...-++||++.|.- +... .-+|+..+
T Consensus 196 l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk---tv~iwn~~ 245 (311)
T KOG0315|consen 196 LLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK---TVKIWNTD 245 (311)
T ss_pred ccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc---eEEEEecC
Confidence 54433 333333211 12 12357898887766 4332 34565544
No 172
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.64 E-value=0.049 Score=58.67 Aligned_cols=240 Identities=15% Similarity=0.172 Sum_probs=133.7
Q ss_pred EeCCEEEEEEeeCCCceEEEEEEecCCCCCCCcccccCCCCCCCCCceEEeechhhcccCCCCcEEEeeeEECCCCCEEE
Q 044808 86 RVGSHYYYQRRYLSKDYVQYCRRFIPNNEAPPSVYDIMPTGPDDPPEEVIIDEEVIKYKNSLENYRITAFKVSPNNKLVA 165 (623)
Q Consensus 86 ~~g~~~y~~~~~~g~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~vllD~n~~a~~~~~~~~~l~~~~~SPDG~~lA 165 (623)
+.|.++-|+...+|.+...++...... + +.+-|. +. ....+.+.|++||+.+.
T Consensus 133 pdg~~la~~~s~~G~e~~~l~v~Dl~t------------------g-~~l~d~--i~------~~~~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 133 PDGKRLAYSLSDGGSEWYTLRVFDLET------------------G-KFLPDG--IE------NPKFSSVSWSDDGKGFF 185 (414)
T ss_dssp TTSSEEEEEEEETTSSEEEEEEEETTT------------------T-EEEEEE--EE------EEESEEEEECTTSSEEE
T ss_pred CCCCEEEEEecCCCCceEEEEEEECCC------------------C-cCcCCc--cc------ccccceEEEeCCCCEEE
Confidence 457788888888777655554443321 1 333322 11 11122389999999999
Q ss_pred EEEeC----------c-eEEEEECCCCCcccccc-----Ccc-c-eeEEecCCe-EEEEEeCCCCCCeEEEEECCCC---
Q 044808 166 FRENC----------G-TVCVIDSETGAPAEKPI-----QGC-L-EFEWAGDEA-FLYTRRNAIAEPQVWFHKLGEE--- 223 (623)
Q Consensus 166 ~~~~~----------~-~l~v~dl~tg~~~~~~i-----~~~-~-~~~WspDg~-l~y~~~d~~~~~~v~~~~lgt~--- 223 (623)
|.... . +|+.+.+.++..-...+ ... . ++.+++|++ ++...........+|+.++...
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~ 265 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSP 265 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTS
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCC
Confidence 99621 2 79999998875431111 122 2 478899994 4544544333138999999874
Q ss_pred CcccEEEEeecCCc-eeEEEEEcCCCcEEEEEeec-ceeeEEEEEECCCCC--cee-ecCCCcccee-EEEEeeCCEEEE
Q 044808 224 QSKDTCLYRTREDL-FDLTLEASESKKFLFVKSKT-KVTGFVYYFDVSRPE--TLW-FLPPWHLGID-MFVSHRGNQFFI 297 (623)
Q Consensus 224 ~~~d~lv~~~~~~~-~~~~~~~S~Dg~~l~i~s~~-~~~s~l~~~dl~~~~--~~~-~l~~~~~~~~-~~~~~dg~~ly~ 297 (623)
...-.++....+.. +.+. .. |..+++.++. .....|+.++++++. .++ .+.+..++.. -.+...+++|++
T Consensus 266 ~~~~~~l~~~~~~~~~~v~--~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl 341 (414)
T PF02897_consen 266 DAKPKLLSPREDGVEYYVD--HH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVL 341 (414)
T ss_dssp S-SEEEEEESSSS-EEEEE--EE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEE
T ss_pred cCCcEEEeCCCCceEEEEE--cc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEE
Confidence 22334454433222 2232 22 5556665653 345689999999876 234 5555555433 357778899999
Q ss_pred -EeCCCCCCeEEEEEeCC-CCCceeeEEcCCCCceEeEEEE--eCCEEEEEEeeCC-cceEEEEECCC
Q 044808 298 -RRSDGGFHSDVLTCPVD-NTFETTVLIPHRERVRVEEVRL--FADHIAVYELEEG-LPKITTYCLPP 360 (623)
Q Consensus 298 -sn~~g~~~~~L~~~d~~-~~~~~~~li~~~~d~~i~~~~~--~~~~Lv~~~~~~g-~~~l~v~~l~~ 360 (623)
.+.++ ..+|..+++. +... ..++......+.++.. ..+.+.+....-. .+.++.+++.+
T Consensus 342 ~~~~~~--~~~l~v~~~~~~~~~--~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t 405 (414)
T PF02897_consen 342 SYRENG--SSRLRVYDLDDGKES--REIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT 405 (414)
T ss_dssp EEEETT--EEEEEEEETT-TEEE--EEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT
T ss_pred EEEECC--ccEEEEEECCCCcEE--eeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 77663 5688889987 3221 1222222223444442 3466777766554 34688888875
No 173
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=97.63 E-value=0.00042 Score=86.54 Aligned_cols=139 Identities=16% Similarity=0.053 Sum_probs=85.0
Q ss_pred CCCCceEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCC
Q 044808 435 DESNYVTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGD 514 (623)
Q Consensus 435 ~~~~~~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~ 514 (623)
+...+....+.+.. || +..++.+...- . ....|.||++||..+... .|. .....| ..+|.|+.+|.||-|
T Consensus 1340 ~~~~l~~~~~~v~~-~~--~~~~i~~~~~G-~-~~~~~~vVllHG~~~s~~--~w~--~~~~~L-~~~~rVi~~Dl~G~G 1409 (1655)
T PLN02980 1340 KEEQVRTYELRVDV-DG--FSCLIKVHEVG-Q-NAEGSVVLFLHGFLGTGE--DWI--PIMKAI-SGSARCISIDLPGHG 1409 (1655)
T ss_pred ccCCCceEEEEEcc-Cc--eEEEEEEEecC-C-CCCCCeEEEECCCCCCHH--HHH--HHHHHH-hCCCEEEEEcCCCCC
Confidence 33444444444432 44 56665554321 1 123578999999765542 344 434333 567999999999976
Q ss_pred cCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCC
Q 044808 515 EKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVP 585 (623)
Q Consensus 515 ~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 585 (623)
.....-............++++.+.+..++++ ...+++.++|+|+||.+++.++.++|++++.+|...+
T Consensus 1410 ~S~~~~~~~~~~~~~~~si~~~a~~l~~ll~~--l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lVlis~ 1478 (1655)
T PLN02980 1410 GSKIQNHAKETQTEPTLSVELVADLLYKLIEH--ITPGKVTLVGYSMGARIALYMALRFSDKIEGAVIISG 1478 (1655)
T ss_pred CCCCccccccccccccCCHHHHHHHHHHHHHH--hCCCCEEEEEECHHHHHHHHHHHhChHhhCEEEEECC
Confidence 54311000000011123566666666555554 2357999999999999999999999999998877654
No 174
>COG0400 Predicted esterase [General function prediction only]
Probab=97.61 E-value=0.00021 Score=68.47 Aligned_cols=117 Identities=15% Similarity=0.133 Sum_probs=71.7
Q ss_pred CCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHH---HcccccCC--CchHhHHHHHHHH
Q 044808 468 DGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWH---ENGKLLNK--RNTFTDFIACADY 542 (623)
Q Consensus 468 ~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~---~~~~~~~~--~~~~~D~~~~~~~ 542 (623)
+...|+||..||- | .....|. + ...++.-.+.++.++-+=.-+.|..|. ..+.-+.+ ......+.+.++.
T Consensus 15 ~p~~~~iilLHG~-G-gde~~~~--~-~~~~~~P~~~~is~rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l~~ 89 (207)
T COG0400 15 DPAAPLLILLHGL-G-GDELDLV--P-LPELILPNATLVSPRGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFLEE 89 (207)
T ss_pred CCCCcEEEEEecC-C-CChhhhh--h-hhhhcCCCCeEEcCCCCccccCcccceeecCCCccchhhHHHHHHHHHHHHHH
Confidence 3457899999993 4 2223444 3 333333345554443332222233332 22221110 1223334455555
Q ss_pred HHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccch
Q 044808 543 LIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDV 589 (623)
Q Consensus 543 l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~ 589 (623)
++++--+|++|+.+.|.|+|+.+++.++.++|++|+++|...|..=.
T Consensus 90 ~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~ail~~g~~~~ 136 (207)
T COG0400 90 LAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGAILFSGMLPL 136 (207)
T ss_pred HHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccchhcCCcCCC
Confidence 55666688999999999999999999999999999999998886643
No 175
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.58 E-value=0.00038 Score=70.26 Aligned_cols=103 Identities=17% Similarity=0.210 Sum_probs=69.7
Q ss_pred CCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCCh-hHHHcccccCCCchHhHHHHHHH-HHHHc
Q 044808 469 GSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGK-QWHENGKLLNKRNTFTDFIACAD-YLIKS 546 (623)
Q Consensus 469 ~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~-~~~~~~~~~~~~~~~~D~~~~~~-~l~~~ 546 (623)
.+.| ||++|| ||+... .|- ...-.|+. ...|-..|.=|.|...+ .|-. .....-.-+++.++ |-+++
T Consensus 89 ~~~p-lVliHG-yGAg~g-~f~--~Nf~~La~-~~~vyaiDllG~G~SSRP~F~~-----d~~~~e~~fvesiE~WR~~~ 157 (365)
T KOG4409|consen 89 NKTP-LVLIHG-YGAGLG-LFF--RNFDDLAK-IRNVYAIDLLGFGRSSRPKFSI-----DPTTAEKEFVESIEQWRKKM 157 (365)
T ss_pred CCCc-EEEEec-cchhHH-HHH--Hhhhhhhh-cCceEEecccCCCCCCCCCCCC-----CcccchHHHHHHHHHHHHHc
Confidence 3445 455887 665543 233 33445555 89999999998765432 1211 12233345666666 67777
Q ss_pred CCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCC
Q 044808 547 NYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVP 585 (623)
Q Consensus 547 ~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 585 (623)
++ +++-++|+|.||||+..-+.++|++++-.|...|
T Consensus 158 ~L---~KmilvGHSfGGYLaa~YAlKyPerV~kLiLvsP 193 (365)
T KOG4409|consen 158 GL---EKMILVGHSFGGYLAAKYALKYPERVEKLILVSP 193 (365)
T ss_pred CC---cceeEeeccchHHHHHHHHHhChHhhceEEEecc
Confidence 76 5999999999999999999999999987777655
No 176
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=97.58 E-value=0.00052 Score=73.25 Aligned_cols=112 Identities=10% Similarity=0.036 Sum_probs=75.3
Q ss_pred CCccEEEEEcCCCCCCCCCCCCchhh-hHHHHHC--CcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHH
Q 044808 469 GSDPLLLFGYGSYGLGPSSYSNSIAS-RLTILDR--GIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIK 545 (623)
Q Consensus 469 ~~~P~il~~~Gg~~~~~~~~~~~~~~-~~~~~~~--G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~ 545 (623)
...|++|++||-........|. .. ...|+.+ .|.|+++|.+|.+... +..+. . .-...-.++.+.+++|.+
T Consensus 39 ~~~ptvIlIHG~~~s~~~~~w~--~~l~~al~~~~~d~nVI~VDw~g~g~s~--y~~a~-~-~t~~vg~~la~lI~~L~~ 112 (442)
T TIGR03230 39 HETKTFIVIHGWTVTGMFESWV--PKLVAALYEREPSANVIVVDWLSRAQQH--YPTSA-A-YTKLVGKDVAKFVNWMQE 112 (442)
T ss_pred CCCCeEEEECCCCcCCcchhhH--HHHHHHHHhccCCCEEEEEECCCcCCCC--Ccccc-c-cHHHHHHHHHHHHHHHHH
Confidence 4568999999954322222344 32 2344433 6999999999876421 11111 0 111233566777888876
Q ss_pred cCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCc
Q 044808 546 SNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPS 586 (623)
Q Consensus 546 ~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 586 (623)
+--.+.+++-+.|+|.||.+++.+....|++.+.++..-|.
T Consensus 113 ~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rItgLDPA 153 (442)
T TIGR03230 113 EFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRITGLDPA 153 (442)
T ss_pred hhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEEEEcCC
Confidence 53367899999999999999999998889988888887764
No 177
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=97.58 E-value=0.00065 Score=68.28 Aligned_cols=103 Identities=18% Similarity=0.085 Sum_probs=71.1
Q ss_pred CCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCC
Q 044808 469 GSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNY 548 (623)
Q Consensus 469 ~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 548 (623)
+..|+||..||=|..... |. .....|+++||.|+++|.||.|..-.-=+ ...-.-.....|+++.++.|-
T Consensus 42 ~~gP~illlHGfPe~wys--wr--~q~~~la~~~~rviA~DlrGyG~Sd~P~~--~~~Yt~~~l~~di~~lld~Lg---- 111 (322)
T KOG4178|consen 42 GDGPIVLLLHGFPESWYS--WR--HQIPGLASRGYRVIAPDLRGYGFSDAPPH--ISEYTIDELVGDIVALLDHLG---- 111 (322)
T ss_pred CCCCEEEEEccCCccchh--hh--hhhhhhhhcceEEEecCCCCCCCCCCCCC--cceeeHHHHHHHHHHHHHHhc----
Confidence 457999999997765533 33 44668899999999999999664321000 000000123345555555444
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEec
Q 044808 549 CSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVAD 583 (623)
Q Consensus 549 ~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 583 (623)
-+|+.+.|+++|+.++-.++.++|++.++.|+.
T Consensus 112 --~~k~~lvgHDwGaivaw~la~~~Perv~~lv~~ 144 (322)
T KOG4178|consen 112 --LKKAFLVGHDWGAIVAWRLALFYPERVDGLVTL 144 (322)
T ss_pred --cceeEEEeccchhHHHHHHHHhChhhcceEEEe
Confidence 379999999999999999999999998877665
No 178
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=97.56 E-value=0.0002 Score=75.96 Aligned_cols=122 Identities=11% Similarity=0.001 Sum_probs=80.2
Q ss_pred CCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHccccc
Q 044808 448 ASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLL 527 (623)
Q Consensus 448 s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~ 527 (623)
+.||.++... ..+ ++..|.||++||.+... ..|. .....| ..+|.|+.+|.||-|.....-. ..
T Consensus 111 ~~~~~~~~y~---~~G----~~~~~~ivllHG~~~~~--~~w~--~~~~~L-~~~~~Via~DlpG~G~S~~p~~----~~ 174 (383)
T PLN03084 111 SSDLFRWFCV---ESG----SNNNPPVLLIHGFPSQA--YSYR--KVLPVL-SKNYHAIAFDWLGFGFSDKPQP----GY 174 (383)
T ss_pred cCCceEEEEE---ecC----CCCCCeEEEECCCCCCH--HHHH--HHHHHH-hcCCEEEEECCCCCCCCCCCcc----cc
Confidence 4677776532 122 12357899999975433 1344 434344 5689999999999764322100 00
Q ss_pred CCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCcc
Q 044808 528 NKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSV 587 (623)
Q Consensus 528 ~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 587 (623)
....+++++...+..++++-- .+++.+.|+|+||.++..++.++|++++.+|...|..
T Consensus 175 ~~~ys~~~~a~~l~~~i~~l~--~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lILi~~~~ 232 (383)
T PLN03084 175 GFNYTLDEYVSSLESLIDELK--SDKVSLVVQGYFSPPVVKYASAHPDKIKKLILLNPPL 232 (383)
T ss_pred cccCCHHHHHHHHHHHHHHhC--CCCceEEEECHHHHHHHHHHHhChHhhcEEEEECCCC
Confidence 112466777766666665422 3589999999999999998889999999998888764
No 179
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=97.55 E-value=0.0006 Score=68.73 Aligned_cols=137 Identities=17% Similarity=0.221 Sum_probs=91.0
Q ss_pred eEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCC---CCCC-CCCCCCchhhhHHHHHC-CcEEEEEeccCCC
Q 044808 440 VTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGS---YGLG-PSSYSNSIASRLTILDR-GIIFAIAHVRGGD 514 (623)
Q Consensus 440 ~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg---~~~~-~~~~~~~~~~~~~~~~~-G~~v~~~~~RG~~ 514 (623)
..+++.+.. ||..|.++.+.-++. .+.-.||+.-|- |... +..... ..++.++.. |..|+..||||=|
T Consensus 111 ~~kRv~Iq~-D~~~IDt~~I~~~~a----~~~RWiL~s~GNg~~~E~~~~~~~~~--~~~~~~ak~~~aNvl~fNYpGVg 183 (365)
T PF05677_consen 111 SVKRVPIQY-DGVKIDTMAIHQPEA----KPQRWILVSNGNGECYENRAMLDYKD--DWIQRFAKELGANVLVFNYPGVG 183 (365)
T ss_pred ceeeEEEee-CCEEEEEEEeeCCCC----CCCcEEEEEcCChHHhhhhhhhcccc--HHHHHHHHHcCCcEEEECCCccc
Confidence 367777765 999999987765543 344566665552 1111 111223 455666665 9999999999943
Q ss_pred c-CChhHHHcccccCCCchHhHHHHHHHHHHHcC-CCCCCcEEEEEeChHHHHHHHHHHhCCCeeeE-------EEecCC
Q 044808 515 E-KGKQWHENGKLLNKRNTFTDFIACADYLIKSN-YCSEDNLCIEGGSAGGMLIGAVLNMRPELFKV-------AVADVP 585 (623)
Q Consensus 515 ~-~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~-~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a-------~v~~~~ 585 (623)
. .|. - ....-+.|..+|++||.++. -+.+++|.++|+|-||..++.++.++. ++. +|.-.+
T Consensus 184 ~S~G~-------~-s~~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~--~~~~dgi~~~~ikDRs 253 (365)
T PF05677_consen 184 SSTGP-------P-SRKDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKEV--LKGSDGIRWFLIKDRS 253 (365)
T ss_pred cCCCC-------C-CHHHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhcc--cccCCCeeEEEEecCC
Confidence 2 221 1 23567899999999999754 578999999999999999888876542 222 444456
Q ss_pred ccchhhhh
Q 044808 586 SVDVLTTI 593 (623)
Q Consensus 586 ~~d~~~~~ 593 (623)
|.++-...
T Consensus 254 fssl~~va 261 (365)
T PF05677_consen 254 FSSLAAVA 261 (365)
T ss_pred cchHHHHH
Confidence 66665443
No 180
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=97.53 E-value=0.00017 Score=68.29 Aligned_cols=128 Identities=20% Similarity=0.187 Sum_probs=82.0
Q ss_pred eEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHc
Q 044808 444 KRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHEN 523 (623)
Q Consensus 444 ~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~ 523 (623)
+.++..||..+++. .+|.+ ++.+-.+.+-|+++.... .|. ...+....+||.|+.-+|||.|+.-..=...
T Consensus 8 ~~l~~~DG~~l~~~-~~pA~-----~~~~g~~~va~a~Gv~~~-fYR--rfA~~a~~~Gf~Vlt~dyRG~g~S~p~~~~~ 78 (281)
T COG4757 8 AHLPAPDGYSLPGQ-RFPAD-----GKASGRLVVAGATGVGQY-FYR--RFAAAAAKAGFEVLTFDYRGIGQSRPASLSG 78 (281)
T ss_pred cccccCCCccCccc-cccCC-----CCCCCcEEecccCCcchh-HhH--HHHHHhhccCceEEEEecccccCCCcccccc
Confidence 66888999999997 66664 345655666777776532 222 4455666689999999999988643211110
Q ss_pred ccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEec
Q 044808 524 GKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVAD 583 (623)
Q Consensus 524 ~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~ 583 (623)
-.-........||-+++++|.+.- -.--+...|+|+||.+.+.+ .++|..=.++|..
T Consensus 79 ~~~~~~DwA~~D~~aal~~~~~~~--~~~P~y~vgHS~GGqa~gL~-~~~~k~~a~~vfG 135 (281)
T COG4757 79 SQWRYLDWARLDFPAALAALKKAL--PGHPLYFVGHSFGGQALGLL-GQHPKYAAFAVFG 135 (281)
T ss_pred CccchhhhhhcchHHHHHHHHhhC--CCCceEEeeccccceeeccc-ccCcccceeeEec
Confidence 001112345689999999998732 11346788999999987654 4667332333433
No 181
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=97.50 E-value=0.0041 Score=61.32 Aligned_cols=122 Identities=16% Similarity=0.040 Sum_probs=84.4
Q ss_pred EeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhH
Q 044808 441 TESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQW 520 (623)
Q Consensus 441 ~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~ 520 (623)
...+.+.+.+|..+..--+|-... +...+..++|-.||.||+..+ |. .....|.+.|..++.+|+-|+|.-...-
T Consensus 6 ~~~~k~~~~~~~~~~~~a~y~D~~-~~gs~~gTVv~~hGsPGSH~D--Fk--Yi~~~l~~~~iR~I~iN~PGf~~t~~~~ 80 (297)
T PF06342_consen 6 RKLVKFQAENGKIVTVQAVYEDSL-PSGSPLGTVVAFHGSPGSHND--FK--YIRPPLDEAGIRFIGINYPGFGFTPGYP 80 (297)
T ss_pred EEEEEcccccCceEEEEEEEEecC-CCCCCceeEEEecCCCCCccc--hh--hhhhHHHHcCeEEEEeCCCCCCCCCCCc
Confidence 445667778887777766775544 333445699999999998865 55 6678889999999999999977432111
Q ss_pred HHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC
Q 044808 521 HENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPE 575 (623)
Q Consensus 521 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~ 575 (623)
.. ...-.+-..-++.|.++=-++ +++.++|+|-|+-.++.+++.+|-
T Consensus 81 ~~-------~~~n~er~~~~~~ll~~l~i~-~~~i~~gHSrGcenal~la~~~~~ 127 (297)
T PF06342_consen 81 DQ-------QYTNEERQNFVNALLDELGIK-GKLIFLGHSRGCENALQLAVTHPL 127 (297)
T ss_pred cc-------ccChHHHHHHHHHHHHHcCCC-CceEEEEeccchHHHHHHHhcCcc
Confidence 10 112233334444455543344 899999999999999999988873
No 182
>PTZ00420 coronin; Provisional
Probab=97.49 E-value=0.27 Score=54.69 Aligned_cols=193 Identities=8% Similarity=0.113 Sum_probs=101.4
Q ss_pred EECCCCCEEEEEEeC--c----eEEEEECCCCCccccccC----ccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCC
Q 044808 156 KVSPNNKLVAFRENC--G----TVCVIDSETGAPAEKPIQ----GCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQ 224 (623)
Q Consensus 156 ~~SPDG~~lA~~~~~--~----~l~v~dl~tg~~~~~~i~----~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~ 224 (623)
.++.+++++|+..+. + .|.++++.....+. .+. .+..++|+|+. .++.+...+. .|.++++.++.
T Consensus 33 ~ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~-~L~gH~~~V~~lafsP~~~~lLASgS~Dg---tIrIWDi~t~~ 108 (568)
T PTZ00420 33 GIACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVI-KLKGHTSSILDLQFNPCFSEILASGSEDL---TIRVWEIPHND 108 (568)
T ss_pred eEeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEE-EEcCCCCCEEEEEEcCCCCCEEEEEeCCC---eEEEEECCCCC
Confidence 356667777776643 2 67888876654332 222 23459999984 6665554221 46777775432
Q ss_pred c------ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcccee-EEEEeeCCEEEE
Q 044808 225 S------KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGID-MFVSHRGNQFFI 297 (623)
Q Consensus 225 ~------~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~-~~~~~dg~~ly~ 297 (623)
. +....+. .+......+.|+|++..++++... ...|.+.|+.++.....+ .....+. ..|+++|..|..
T Consensus 109 ~~~~~i~~p~~~L~-gH~~~V~sVaf~P~g~~iLaSgS~--DgtIrIWDl~tg~~~~~i-~~~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 109 ESVKEIKDPQCILK-GHKKKISIIDWNPMNYYIMCSSGF--DSFVNIWDIENEKRAFQI-NMPKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred ccccccccceEEee-cCCCcEEEEEECCCCCeEEEEEeC--CCeEEEEECCCCcEEEEE-ecCCcEEEEEECCCCCEEEE
Confidence 1 0111222 122234567899999987764432 356778888877511112 1222222 357788876654
Q ss_pred EeCCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEE-----EeCCEEEEEEeeCC-cceEEEEECCC
Q 044808 298 RRSDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVR-----LFADHIAVYELEEG-LPKITTYCLPP 360 (623)
Q Consensus 298 sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~-----~~~~~Lv~~~~~~g-~~~l~v~~l~~ 360 (623)
+..+ ..|..+|+.++....-+-.|........+. ..+++|+.....+. ..+|.+|++..
T Consensus 185 ~s~D----~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 185 TCVG----KHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EecC----CEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 4444 256667776654322122332221111111 22345555454432 23699999874
No 183
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=97.48 E-value=0.0003 Score=70.57 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=66.8
Q ss_pred ccEEEEEcCCCCCC--CCCCCCchhhhHHHHHCCcEEEEEeccCC-CcCChhHHHcccccCCCchHhHHHHHHHHHHHc-
Q 044808 471 DPLLLFGYGSYGLG--PSSYSNSIASRLTILDRGIIFAIAHVRGG-DEKGKQWHENGKLLNKRNTFTDFIACADYLIKS- 546 (623)
Q Consensus 471 ~P~il~~~Gg~~~~--~~~~~~~~~~~~~~~~~G~~v~~~~~RG~-~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~- 546 (623)
.-+||++-| -+.. ..|... .-...|-..||.|+.+..+-| +|||..=.+ ++.+|+.+|++||...
T Consensus 33 ~~~llfIGG-LtDGl~tvpY~~--~La~aL~~~~wsl~q~~LsSSy~G~G~~SL~--------~D~~eI~~~v~ylr~~~ 101 (303)
T PF08538_consen 33 PNALLFIGG-LTDGLLTVPYLP--DLAEALEETGWSLFQVQLSSSYSGWGTSSLD--------RDVEEIAQLVEYLRSEK 101 (303)
T ss_dssp SSEEEEE---TT--TT-STCHH--HHHHHHT-TT-EEEEE--GGGBTTS-S--HH--------HHHHHHHHHHHHHHHHS
T ss_pred CcEEEEECC-CCCCCCCCchHH--HHHHHhccCCeEEEEEEecCccCCcCcchhh--------hHHHHHHHHHHHHHHhh
Confidence 347777655 3322 222222 233444456999999999984 566644333 6889999999999987
Q ss_pred -CCCCCCcEEEEEeChHHHHHHHHHHhCC-----CeeeEEEecCCccchhhhh
Q 044808 547 -NYCSEDNLCIEGGSAGGMLIGAVLNMRP-----ELFKVAVADVPSVDVLTTI 593 (623)
Q Consensus 547 -~~~d~~ri~i~G~S~GG~l~~~~~~~~p-----~~f~a~v~~~~~~d~~~~~ 593 (623)
|.-..++|++||+|=|.--++..+.... .....+|.|+||.|-....
T Consensus 102 ~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~ 154 (303)
T PF08538_consen 102 GGHFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAIL 154 (303)
T ss_dssp ------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTT
T ss_pred ccccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhh
Confidence 3346799999999999999888776642 4579999999999976443
No 184
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=97.46 E-value=0.00056 Score=66.62 Aligned_cols=116 Identities=16% Similarity=0.108 Sum_probs=79.0
Q ss_pred EeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHC-CcEEEEEeccCCCcCChh
Q 044808 441 TESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDR-GIIFAIAHVRGGDEKGKQ 519 (623)
Q Consensus 441 ~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~-G~~v~~~~~RG~~~~G~~ 519 (623)
.+.+.+++.|+ ++-+++..|. ...-|+++..|||-.+. -+|. .....+..+ -..+++.|.||-|+---+
T Consensus 50 kedv~i~~~~~-t~n~Y~t~~~-----~t~gpil~l~HG~G~S~--LSfA--~~a~el~s~~~~r~~a~DlRgHGeTk~~ 119 (343)
T KOG2564|consen 50 KEDVSIDGSDL-TFNVYLTLPS-----ATEGPILLLLHGGGSSA--LSFA--IFASELKSKIRCRCLALDLRGHGETKVE 119 (343)
T ss_pred ccccccCCCcc-eEEEEEecCC-----CCCccEEEEeecCcccc--hhHH--HHHHHHHhhcceeEEEeeccccCccccC
Confidence 56677777776 5666655554 24579999999973322 2566 556667665 566689999997764211
Q ss_pred HHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 044808 520 WHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNM 572 (623)
Q Consensus 520 ~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~ 572 (623)
=.. -.-......|+.+.++++-.. ++..|.+.|+|.||-++...+.+
T Consensus 120 ~e~---dlS~eT~~KD~~~~i~~~fge---~~~~iilVGHSmGGaIav~~a~~ 166 (343)
T KOG2564|consen 120 NED---DLSLETMSKDFGAVIKELFGE---LPPQIILVGHSMGGAIAVHTAAS 166 (343)
T ss_pred Chh---hcCHHHHHHHHHHHHHHHhcc---CCCceEEEeccccchhhhhhhhh
Confidence 111 123345678999888888743 35679999999999999877655
No 185
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.44 E-value=0.12 Score=57.01 Aligned_cols=236 Identities=11% Similarity=0.059 Sum_probs=135.6
Q ss_pred EEEeeeEECCCCCEEEEEEeCc-eEEEEECCCCCccc-c--ccCccceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCc
Q 044808 150 YRITAFKVSPNNKLVAFRENCG-TVCVIDSETGAPAE-K--PIQGCLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 150 ~~l~~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~-~--~i~~~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~ 225 (623)
..|..+.|+--|.+|||+...- +|-||+..+-..+- . ..+.+..++.||||+++.+..++. +|..++..++-.
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg---KVKvWn~~SgfC 384 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG---KVKVWNTQSGFC 384 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC---cEEEEeccCceE
Confidence 4566778888899999998765 88899887765332 1 244555699999997766654332 577777766532
Q ss_pred ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCC-Cccc-eeEEEEeeCCEEEEEeCCCC
Q 044808 226 KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPP-WHLG-IDMFVSHRGNQFFIRRSDGG 303 (623)
Q Consensus 226 ~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~-~~~~-~~~~~~~dg~~ly~sn~~g~ 303 (623)
...|.|.... ...+.++..|+.|+-.+.+ ..|...|+.....++.++. .... ....+++.|+.+.....+
T Consensus 385 --~vTFteHts~-Vt~v~f~~~g~~llssSLD---GtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d-- 456 (893)
T KOG0291|consen 385 --FVTFTEHTSG-VTAVQFTARGNVLLSSSLD---GTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQD-- 456 (893)
T ss_pred --EEEeccCCCc-eEEEEEEecCCEEEEeecC---CeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccc--
Confidence 4456654332 3457889999887643332 3455566655432444432 2111 122455656544434444
Q ss_pred CCeEEEEEeCCCCCceeeEEcCCCCceEeE--EEEeCCEEEEEEeeCCcceEEEEECC-CCCCCcccccCCceeecCCCc
Q 044808 304 FHSDVLTCPVDNTFETTVLIPHRERVRVEE--VRLFADHIAVYELEEGLPKITTYCLP-PVGEPLKTLQGGRTVDIFKSE 380 (623)
Q Consensus 304 ~~~~L~~~d~~~~~~~~~li~~~~d~~i~~--~~~~~~~Lv~~~~~~g~~~l~v~~l~-~~g~~~~~l~~~~~i~~p~~~ 380 (623)
.+.|+.++++++..-. ++..++.. +.+ +.+.++.|+-...+.. +++++.= ..|. ..++.....+
T Consensus 457 -~F~IfvWS~qTGqllD-iLsGHEgP-Vs~l~f~~~~~~LaS~SWDkT---VRiW~if~s~~~-------vEtl~i~sdv 523 (893)
T KOG0291|consen 457 -SFEIFVWSVQTGQLLD-ILSGHEGP-VSGLSFSPDGSLLASGSWDKT---VRIWDIFSSSGT-------VETLEIRSDV 523 (893)
T ss_pred -eEEEEEEEeecCeeee-hhcCCCCc-ceeeEEccccCeEEeccccce---EEEEEeeccCce-------eeeEeeccce
Confidence 5899999998875432 45555543 444 5556665554444443 5555542 1122 1234433322
Q ss_pred eEEEeeeccccCCcCCceEEEEeecCCCCCeEEEEECCCC
Q 044808 381 LCISRIHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTG 420 (623)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~ 420 (623)
..+++.|++..+.+.. .-+.+-.+|.+.+
T Consensus 524 -------l~vsfrPdG~elaVaT----ldgqItf~d~~~~ 552 (893)
T KOG0291|consen 524 -------LAVSFRPDGKELAVAT----LDGQITFFDIKEA 552 (893)
T ss_pred -------eEEEEcCCCCeEEEEE----ecceEEEEEhhhc
Confidence 2345678888887753 2345555665443
No 186
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.43 E-value=0.034 Score=56.78 Aligned_cols=251 Identities=15% Similarity=0.110 Sum_probs=121.0
Q ss_pred eEEeechhhcccCCCCcEE---EeeeEECCCCCEEEEEEe---Cc-------eEEEEECCCCCcccc-ccCc-----c--
Q 044808 133 EVIIDEEVIKYKNSLENYR---ITAFKVSPNNKLVAFREN---CG-------TVCVIDSETGAPAEK-PIQG-----C-- 191 (623)
Q Consensus 133 ~vllD~n~~a~~~~~~~~~---l~~~~~SPDG~~lA~~~~---~~-------~l~v~dl~tg~~~~~-~i~~-----~-- 191 (623)
..++|.++..-- |... ++.+.+||||+.+..+.. +. -|-++|.+|-.+..+ .|+. +
T Consensus 19 v~viD~d~~k~l---Gmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~ 95 (342)
T PF06433_consen 19 VYVIDADSGKLL---GMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVP 95 (342)
T ss_dssp EEEEETTTTEEE---EEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS-
T ss_pred EEEEECCCCcEE---EEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecc
Confidence 556776653311 3222 345789999999887632 11 699999998765443 3332 1
Q ss_pred -ce-eEEecCCeEEEEEeCCCCCCeEEEEECCCCCcccEEEEeecCCceeEE--------EEEcCCCcEEEEEeecceee
Q 044808 192 -LE-FEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSKDTCLYRTREDLFDLT--------LEASESKKFLFVKSKTKVTG 261 (623)
Q Consensus 192 -~~-~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~~~~~~~~~~~--------~~~S~Dg~~l~i~s~~~~~s 261 (623)
.+ ++.|+||+++|+.+-.. .+.|-..++... ..+-+-+-|+...- .....||+.+.+.-...+..
T Consensus 96 ~~~~~~ls~dgk~~~V~N~TP-a~SVtVVDl~~~----kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~ 170 (342)
T PF06433_consen 96 YKNMFALSADGKFLYVQNFTP-ATSVTVVDLAAK----KVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKE 170 (342)
T ss_dssp -GGGEEE-TTSSEEEEEEESS-SEEEEEEETTTT----EEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSE
T ss_pred cccceEEccCCcEEEEEccCC-CCeEEEEECCCC----ceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCE
Confidence 13 88999997777664221 116777777654 22222122222110 12345555554433221111
Q ss_pred EEEEEECCCCCceeecCCCccce--eEEEEeeCCEEEE-EeCCCCCCeEEEEEeCCCCCc---eee-EE----------c
Q 044808 262 FVYYFDVSRPETLWFLPPWHLGI--DMFVSHRGNQFFI-RRSDGGFHSDVLTCPVDNTFE---TTV-LI----------P 324 (623)
Q Consensus 262 ~l~~~dl~~~~~~~~l~~~~~~~--~~~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~~---~~~-li----------~ 324 (623)
. -. ....+.+..+.+ ...+...++++|| |-. +.|+.+++..... ..| ++ |
T Consensus 171 ~-~~-------~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~-----G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrP 237 (342)
T PF06433_consen 171 A-QK-------STKVFDPDDDPLFEHPAYSRDGGRLYFVSYE-----GNVYSADLSGDSAKFGKPWSLLTDAEKADGWRP 237 (342)
T ss_dssp E-EE-------EEEESSTTTS-B-S--EEETTTTEEEEEBTT-----SEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE
T ss_pred e-Ee-------eccccCCCCcccccccceECCCCeEEEEecC-----CEEEEEeccCCcccccCcccccCccccccCcCC
Confidence 0 00 011111211111 1223445678888 544 3688887765431 223 21 1
Q ss_pred CCCCceEeEEEEeCCEEEEEEeeC-------CcceEEEEECCCCCCCcccccCCceeecCCCceEEEeeeccccCCcCCc
Q 044808 325 HRERVRVEEVRLFADHIAVYELEE-------GLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCISRIHGIRDSQFSSS 397 (623)
Q Consensus 325 ~~~d~~i~~~~~~~~~Lv~~~~~~-------g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~~ 397 (623)
.... +..+....++||+.-.++ +..+||++|+.+ ++.+ .++.++.+.-.| +.+.+..
T Consensus 238 GG~Q--~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t-~krv------~Ri~l~~~~~Si-------~Vsqd~~ 301 (342)
T PF06433_consen 238 GGWQ--LIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKT-HKRV------ARIPLEHPIDSI-------AVSQDDK 301 (342)
T ss_dssp -SSS---EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTT-TEEE------EEEEEEEEESEE-------EEESSSS
T ss_pred ccee--eeeeccccCeEEEEecCCCCCCccCCceEEEEEECCC-CeEE------EEEeCCCccceE-------EEccCCC
Confidence 1111 222333356788765432 345899999986 5543 344443322122 2223444
Q ss_pred eEEEEeecCCCCCeEEEEECCCCcE
Q 044808 398 ILRICFYTMRMPFSAYDYDMNTGIS 422 (623)
Q Consensus 398 ~~~~~~ss~~~P~~~~~~d~~~~~~ 422 (623)
-+++..+. .-..++.+|..+|+.
T Consensus 302 P~L~~~~~--~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 302 PLLYALSA--GDGTLDVYDAATGKL 324 (342)
T ss_dssp -EEEEEET--TTTEEEEEETTT--E
T ss_pred cEEEEEcC--CCCeEEEEeCcCCcE
Confidence 44555443 236899999999874
No 187
>PTZ00421 coronin; Provisional
Probab=97.42 E-value=0.016 Score=63.67 Aligned_cols=146 Identities=13% Similarity=0.141 Sum_probs=85.0
Q ss_pred EEEeeeEECCCC-CEEEEEEeCceEEEEECCCCCccccccC----ccceeEEecCCeEEEEEeCCCCCCeEEEEECCCCC
Q 044808 150 YRITAFKVSPNN-KLVAFRENCGTVCVIDSETGAPAEKPIQ----GCLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQ 224 (623)
Q Consensus 150 ~~l~~~~~SPDG-~~lA~~~~~~~l~v~dl~tg~~~~~~i~----~~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~ 224 (623)
..+..+.|+|++ ++||-+...++|+|||+.+++.+. .+. .+.+++|+|||.++.+...+. .|.++++.++.
T Consensus 126 ~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~-~l~~h~~~V~sla~spdG~lLatgs~Dg---~IrIwD~rsg~ 201 (493)
T PTZ00421 126 KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVE-VIKCHSDQITSLEWNLDGSLLCTTSKDK---KLNIIDPRDGT 201 (493)
T ss_pred CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEE-EEcCCCCceEEEEEECCCCEEEEecCCC---EEEEEECCCCc
Confidence 356788999987 577766655599999999987653 222 234699999996555543221 57888887763
Q ss_pred cccEEEEeecCCceeEEEEEcCCCcEEEEEeec-ceeeEEEEEECCCCC-ceeecC-CCcccee-EEEEeeCCEEEE-Ee
Q 044808 225 SKDTCLYRTREDLFDLTLEASESKKFLFVKSKT-KVTGFVYYFDVSRPE-TLWFLP-PWHLGID-MFVSHRGNQFFI-RR 299 (623)
Q Consensus 225 ~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~-~~~s~l~~~dl~~~~-~~~~l~-~~~~~~~-~~~~~dg~~ly~-sn 299 (623)
. ...+..........+.|.+++..|+....+ .....|.+.|+.+.. ...... .....+. ..++++++.||+ +.
T Consensus 202 ~--v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk 279 (493)
T PTZ00421 202 I--VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSK 279 (493)
T ss_pred E--EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEe
Confidence 2 111221111122345678888776543322 234678888987654 222111 1111222 236777887777 54
Q ss_pred CC
Q 044808 300 SD 301 (623)
Q Consensus 300 ~~ 301 (623)
.+
T Consensus 280 gD 281 (493)
T PTZ00421 280 GE 281 (493)
T ss_pred CC
Confidence 34
No 188
>PRK05855 short chain dehydrogenase; Validated
Probab=97.39 E-value=0.00054 Score=77.27 Aligned_cols=106 Identities=13% Similarity=0.097 Sum_probs=65.4
Q ss_pred ECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccc
Q 044808 447 YASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKL 526 (623)
Q Consensus 447 ~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~ 526 (623)
...||.+|.... +. +...|.||++||..+.. ..|. .....| .+||.|+.+|.||-|..... .
T Consensus 8 ~~~~g~~l~~~~-~g------~~~~~~ivllHG~~~~~--~~w~--~~~~~L-~~~~~Vi~~D~~G~G~S~~~------~ 69 (582)
T PRK05855 8 VSSDGVRLAVYE-WG------DPDRPTVVLVHGYPDNH--EVWD--GVAPLL-ADRFRVVAYDVRGAGRSSAP------K 69 (582)
T ss_pred EeeCCEEEEEEE-cC------CCCCCeEEEEcCCCchH--HHHH--HHHHHh-hcceEEEEecCCCCCCCCCC------C
Confidence 346888877652 21 12358999999976443 2344 444444 78999999999997654311 1
Q ss_pred cCCCchHhHHHHHHHHHHHcCCCCCCc-EEEEEeChHHHHHHHHHHh
Q 044808 527 LNKRNTFTDFIACADYLIKSNYCSEDN-LCIEGGSAGGMLIGAVLNM 572 (623)
Q Consensus 527 ~~~~~~~~D~~~~~~~l~~~~~~d~~r-i~i~G~S~GG~l~~~~~~~ 572 (623)
.....+++|+.+-+..+++.- ...+ +.+.|+|+||.++..++.+
T Consensus 70 ~~~~~~~~~~a~dl~~~i~~l--~~~~~~~lvGhS~Gg~~a~~~a~~ 114 (582)
T PRK05855 70 RTAAYTLARLADDFAAVIDAV--SPDRPVHLLAHDWGSIQGWEAVTR 114 (582)
T ss_pred cccccCHHHHHHHHHHHHHHh--CCCCcEEEEecChHHHHHHHHHhC
Confidence 111234555555555444431 2344 9999999999888766654
No 189
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=97.35 E-value=0.001 Score=75.64 Aligned_cols=99 Identities=15% Similarity=0.113 Sum_probs=66.5
Q ss_pred CccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChh--HHH-----c---cc---------ccCCC
Q 044808 470 SDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQ--WHE-----N---GK---------LLNKR 530 (623)
Q Consensus 470 ~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~--~~~-----~---~~---------~~~~~ 530 (623)
..|+|+++||-.+.. ..|. .....|.++||.|+.+|+||-|..... +.. . ++ ++.-.
T Consensus 448 g~P~VVllHG~~g~~--~~~~--~lA~~La~~Gy~VIaiDlpGHG~S~~~~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~r 523 (792)
T TIGR03502 448 GWPVVIYQHGITGAK--ENAL--AFAGTLAAAGVATIAIDHPLHGARSFDANASGVNATNANVLAYMNLASLLVARDNLR 523 (792)
T ss_pred CCcEEEEeCCCCCCH--HHHH--HHHHHHHhCCcEEEEeCCCCCCccccccccccccccccCccceeccccccccccCHH
Confidence 468999999954433 2344 556678889999999999997654221 000 0 00 11223
Q ss_pred chHhHHHHHHHHHH------Hc----CCCCCCcEEEEEeChHHHHHHHHHHh
Q 044808 531 NTFTDFIACADYLI------KS----NYCSEDNLCIEGGSAGGMLIGAVLNM 572 (623)
Q Consensus 531 ~~~~D~~~~~~~l~------~~----~~~d~~ri~i~G~S~GG~l~~~~~~~ 572 (623)
..+.|+......|. ++ +-.+..++.++|+|.||++....+..
T Consensus 524 Q~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 524 QSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 46678887777776 11 22567899999999999999877764
No 190
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=97.29 E-value=0.0005 Score=68.27 Aligned_cols=127 Identities=14% Similarity=0.100 Sum_probs=81.3
Q ss_pred eEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHC----CcEEEEEeccCCCcCChhHHHcccccC
Q 044808 453 EIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDR----GIIFAIAHVRGGDEKGKQWHENGKLLN 528 (623)
Q Consensus 453 ~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~----G~~v~~~~~RG~~~~G~~~~~~~~~~~ 528 (623)
+.-..++.|++. .+..++|+|+..||-......+- . ...-.|+.. ..+++.+++----...+.++
T Consensus 81 ~~~~vv~lppgy-~~~~k~pvl~~~DG~~~~~~g~i-~--~~~dsli~~g~i~pai~vgid~~d~~~R~~~~~------- 149 (299)
T COG2382 81 ERRRVVYLPPGY-NPLEKYPVLYLQDGQDWFRSGRI-P--RILDSLIAAGEIPPAILVGIDYIDVKKRREELH------- 149 (299)
T ss_pred ceeEEEEeCCCC-CccccccEEEEeccHHHHhcCCh-H--HHHHHHHHcCCCCCceEEecCCCCHHHHHHHhc-------
Confidence 455566888887 67789999999998532222211 1 223355554 57788777653333223332
Q ss_pred CCchHhHHHHHH--HHHHHc-C-CCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchh
Q 044808 529 KRNTFTDFIACA--DYLIKS-N-YCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVL 590 (623)
Q Consensus 529 ~~~~~~D~~~~~--~~l~~~-~-~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~ 590 (623)
....+.++++.. =|+.+. + .-++++=+++|.|.||+.++++..++|++|.+++++.|.+++.
T Consensus 150 ~n~~~~~~L~~eLlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~s~Sps~~~~ 215 (299)
T COG2382 150 CNEAYWRFLAQELLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFGHVLSQSGSFWWT 215 (299)
T ss_pred ccHHHHHHHHHHhhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhceeeccCCccccC
Confidence 112222222211 122221 1 2477888999999999999999999999999999999999874
No 191
>PRK10115 protease 2; Provisional
Probab=97.27 E-value=0.4 Score=55.11 Aligned_cols=197 Identities=9% Similarity=-0.013 Sum_probs=102.6
Q ss_pred eeEECCCCCEEEEEEeCc------eEEEEECCCCCcccc-ccCc---cce-eEEec-CC-eEEEEEeCCCCCCeEEEEEC
Q 044808 154 AFKVSPNNKLVAFRENCG------TVCVIDSETGAPAEK-PIQG---CLE-FEWAG-DE-AFLYTRRNAIAEPQVWFHKL 220 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~------~l~v~dl~tg~~~~~-~i~~---~~~-~~Wsp-Dg-~l~y~~~d~~~~~~v~~~~l 220 (623)
.+.|++||+.|.|+.... +||..++.|+..-.. ...+ ... ..|.. |+ .+++...... ...+++...
T Consensus 176 ~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~-~~~~~l~~~ 254 (686)
T PRK10115 176 SFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASAT-TSEVLLLDA 254 (686)
T ss_pred EEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCc-cccEEEEEC
Confidence 479999999999997521 899999999832111 1111 112 44555 77 4443333221 125666653
Q ss_pred CCCCcccEEEEe-ecCCceeEEEEEcCCCcEEEEEeec-ceeeEEEEEECCCCCceeecCCCccce-eEEEEeeCCEEEE
Q 044808 221 GEEQSKDTCLYR-TREDLFDLTLEASESKKFLFVKSKT-KVTGFVYYFDVSRPETLWFLPPWHLGI-DMFVSHRGNQFFI 297 (623)
Q Consensus 221 gt~~~~d~lv~~-~~~~~~~~~~~~S~Dg~~l~i~s~~-~~~s~l~~~dl~~~~~~~~l~~~~~~~-~~~~~~dg~~ly~ 297 (623)
.....+...+.. +.+..+.+ . ..+..+++.++. .....|..+++.+...++.+.+..++. .-.+...++.|++
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~--~--~~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~ 330 (686)
T PRK10115 255 ELADAEPFVFLPRRKDHEYSL--D--HYQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVV 330 (686)
T ss_pred cCCCCCceEEEECCCCCEEEE--E--eCCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEE
Confidence 222112233333 22222322 1 223556665543 345678888887422467777664332 2234455788888
Q ss_pred -EeCCCCCCeEEEEEeCCCCCceeeEEc-CCCCceEeEEEE----eCCEEEEEEeeC-CcceEEEEECCC
Q 044808 298 -RRSDGGFHSDVLTCPVDNTFETTVLIP-HRERVRVEEVRL----FADHIAVYELEE-GLPKITTYCLPP 360 (623)
Q Consensus 298 -sn~~g~~~~~L~~~d~~~~~~~~~li~-~~~d~~i~~~~~----~~~~Lv~~~~~~-g~~~l~v~~l~~ 360 (623)
.+.++ ..+|+.++..+.... .++ ..+.. +..+.. ..+.+++....- ....++.+++.+
T Consensus 331 ~~~~~g--~~~l~~~~~~~~~~~--~l~~~~~~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~ 395 (686)
T PRK10115 331 EERQRG--LTSLRQINRKTREVI--GIAFDDPAY-VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDT 395 (686)
T ss_pred EEEeCC--EEEEEEEcCCCCceE--EecCCCCce-EeeecccCCCCCceEEEEEecCCCCCEEEEEECCC
Confidence 77653 467888887543221 222 21211 222222 224555555443 345788888764
No 192
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.27 E-value=0.0072 Score=67.54 Aligned_cols=138 Identities=12% Similarity=0.091 Sum_probs=81.3
Q ss_pred EeeeEECCCCCEEEEEEeCc------------eEEEEECCCCCccccccCc-cceeEEecCC-eEEEEEeCCCCCCeEEE
Q 044808 152 ITAFKVSPNNKLVAFRENCG------------TVCVIDSETGAPAEKPIQG-CLEFEWAGDE-AFLYTRRNAIAEPQVWF 217 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~------------~l~v~dl~tg~~~~~~i~~-~~~~~WspDg-~l~y~~~d~~~~~~v~~ 217 (623)
++.++|||||++|+|..+.. +|+++++.+|+... .+++ +..+.||||| +++|+.. .+||.
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~-~~~g~Issl~wSpDG~RiA~i~~-----g~v~V 472 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS-RVPGPISELQLSRDGVRAAMIIG-----GKVYL 472 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh-ccCCCcCeEEECCCCCEEEEEEC-----CEEEE
Confidence 67899999999999986541 78888888877654 3343 4569999999 8888872 15766
Q ss_pred ---EECCCCCcccEE-----EEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCC-ccceeEEE
Q 044808 218 ---HKLGEEQSKDTC-----LYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPW-HLGIDMFV 288 (623)
Q Consensus 218 ---~~lgt~~~~d~l-----v~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~-~~~~~~~~ 288 (623)
.+.+.+. ..+ +.... ..-..++.|..|+..+ +.. +.....+|.+++++.. ...+..+ ....-..+
T Consensus 473 a~Vvr~~~G~--~~l~~~~~l~~~l-~~~~~~l~W~~~~~L~-V~~-~~~~~~v~~v~vDG~~-~~~~~~~n~~~~v~~v 546 (591)
T PRK13616 473 AVVEQTEDGQ--YALTNPREVGPGL-GDTAVSLDWRTGDSLV-VGR-SDPEHPVWYVNLDGSN-SDALPSRNLSAPVVAV 546 (591)
T ss_pred EEEEeCCCCc--eeecccEEeeccc-CCccccceEecCCEEE-EEe-cCCCCceEEEecCCcc-ccccCCCCccCceEEE
Confidence 3333332 122 21111 1112457799999854 433 3345679999998654 2221111 01101234
Q ss_pred EeeCCEEEEEeCC
Q 044808 289 SHRGNQFFIRRSD 301 (623)
Q Consensus 289 ~~dg~~ly~sn~~ 301 (623)
....+.+|+++.+
T Consensus 547 aa~~~~iyv~~~~ 559 (591)
T PRK13616 547 AASPSTVYVTDAR 559 (591)
T ss_pred ecCCceEEEEcCC
Confidence 4444677774433
No 193
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=97.25 E-value=0.001 Score=72.31 Aligned_cols=114 Identities=22% Similarity=0.251 Sum_probs=70.7
Q ss_pred ccEEEEEcCCCCCCCCCCCCchhhhHHHHHC-CcEEEEEeccCCCcCChhHHHc------ccccCCCchHhHHHHHHHHH
Q 044808 471 DPLLLFGYGSYGLGPSSYSNSIASRLTILDR-GIIFAIAHVRGGDEKGKQWHEN------GKLLNKRNTFTDFIACADYL 543 (623)
Q Consensus 471 ~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~-G~~v~~~~~RG~~~~G~~~~~~------~~~~~~~~~~~D~~~~~~~l 543 (623)
.|++|++=|- + ...+.+........|+.+ |..+++.-.|= ||+..--. -+-..-...+.|+..-++++
T Consensus 29 gpifl~~ggE-~-~~~~~~~~~~~~~~lA~~~~a~~v~lEHRy---YG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~ 103 (434)
T PF05577_consen 29 GPIFLYIGGE-G-PIEPFWINNGFMWELAKEFGALVVALEHRY---YGKSQPFGDLSTENLRYLTSEQALADLAYFIRYV 103 (434)
T ss_dssp SEEEEEE--S-S--HHHHHHH-HHHHHHHHHHTEEEEEE--TT---STTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCC-C-ccchhhhcCChHHHHHHHcCCcEEEeehhh---hcCCCCccccchhhHHhcCHHHHHHHHHHHHHHH
Confidence 7999988442 2 211111100233456665 99999999995 55543111 12222335889999999999
Q ss_pred HHc-CCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccch
Q 044808 544 IKS-NYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDV 589 (623)
Q Consensus 544 ~~~-~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~ 589 (623)
.++ ...+..++.++|+||||.|++|+-.++|++|.+++|-.+++..
T Consensus 104 ~~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~ga~ASSapv~a 150 (434)
T PF05577_consen 104 KKKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDGAWASSAPVQA 150 (434)
T ss_dssp HHHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SEEEEET--CCH
T ss_pred HHhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEEEEeccceeee
Confidence 864 3445579999999999999999999999999999988776654
No 194
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=97.25 E-value=0.071 Score=51.63 Aligned_cols=137 Identities=9% Similarity=0.083 Sum_probs=76.9
Q ss_pred EEeeeEECCCCCEEEEEEeCc-eEEEEECCCCCccccccCcc-c--eeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCc
Q 044808 151 RITAFKVSPNNKLVAFRENCG-TVCVIDSETGAPAEKPIQGC-L--EFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~~~i~~~-~--~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~ 225 (623)
++....|+|-+.=+.++.+.+ +|++||..+++.... +... . .+.|+||| .+++...++ .|-..+..+-
T Consensus 66 svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~-i~~~~eni~i~wsp~g~~~~~~~kdD----~it~id~r~~-- 138 (313)
T KOG1407|consen 66 SVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTAR-IETKGENINITWSPDGEYIAVGNKDD----RITFIDARTY-- 138 (313)
T ss_pred chhhheeCCCCCcceEEecCCceEEEEEeccCcEEEE-eeccCcceEEEEcCCCCEEEEecCcc----cEEEEEeccc--
Confidence 566778888777555555544 999999999997753 3222 2 38999999 676654433 3555554432
Q ss_pred ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcccee-EEEEeeCCEEEE-Ee
Q 044808 226 KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGID-MFVSHRGNQFFI-RR 299 (623)
Q Consensus 226 ~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~-~~~~~dg~~ly~-sn 299 (623)
..+-++...-+...+.|.-++...++ .+.-+.-+|.-.+ .-+....+..+..+.. ..|+|+|++|.+ +-
T Consensus 139 --~~~~~~~~~~e~ne~~w~~~nd~Ffl-t~GlG~v~ILsyp--sLkpv~si~AH~snCicI~f~p~GryfA~GsA 209 (313)
T KOG1407|consen 139 --KIVNEEQFKFEVNEISWNNSNDLFFL-TNGLGCVEILSYP--SLKPVQSIKAHPSNCICIEFDPDGRYFATGSA 209 (313)
T ss_pred --ceeehhcccceeeeeeecCCCCEEEE-ecCCceEEEEecc--ccccccccccCCcceEEEEECCCCceEeeccc
Confidence 22222222223345677766655444 4333334443333 1111233333443322 368999998887 44
No 195
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=97.21 E-value=0.0022 Score=70.43 Aligned_cols=88 Identities=15% Similarity=0.088 Sum_probs=61.3
Q ss_pred hhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHH----H
Q 044808 494 SRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGA----V 569 (623)
Q Consensus 494 ~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~----~ 569 (623)
....|+++||.|+.+|.||-|..+..+ ....-..+++.++++++.+. +..+++.+.|+|.||.+++. .
T Consensus 212 lv~~L~~qGf~V~~iDwrgpg~s~~~~------~~ddY~~~~i~~al~~v~~~--~g~~kv~lvG~cmGGtl~a~ala~~ 283 (532)
T TIGR01838 212 LVRWLVEQGHTVFVISWRNPDASQADK------TFDDYIRDGVIAALEVVEAI--TGEKQVNCVGYCIGGTLLSTALAYL 283 (532)
T ss_pred HHHHHHHCCcEEEEEECCCCCcccccC------ChhhhHHHHHHHHHHHHHHh--cCCCCeEEEEECcCcHHHHHHHHHH
Confidence 457888999999999999865432211 01122335677888888864 45689999999999998632 2
Q ss_pred HHhC-CCeeeEEEecCCccch
Q 044808 570 LNMR-PELFKVAVADVPSVDV 589 (623)
Q Consensus 570 ~~~~-p~~f~a~v~~~~~~d~ 589 (623)
+..+ |++.+.++.....+|+
T Consensus 284 aa~~~~~rv~slvll~t~~Df 304 (532)
T TIGR01838 284 AARGDDKRIKSATFFTTLLDF 304 (532)
T ss_pred HHhCCCCccceEEEEecCcCC
Confidence 3344 7778888877766664
No 196
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.28 Score=48.77 Aligned_cols=241 Identities=12% Similarity=0.049 Sum_probs=128.7
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccC----ccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCc
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQ----GCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~----~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~ 225 (623)
.+..+.+|+||.+|+-+.+...|.++|..+|+.+. +|. ++.-+.|.... .+++.+.... ..|.+..+-+..
T Consensus 16 ~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~-ti~skkyG~~~~~Fth~~~~~i~sStk~d--~tIryLsl~dNk- 91 (311)
T KOG1446|consen 16 KINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK-TINSKKYGVDLACFTHHSNTVIHSSTKED--DTIRYLSLHDNK- 91 (311)
T ss_pred ceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee-EeecccccccEEEEecCCceEEEccCCCC--CceEEEEeecCc-
Confidence 46788999999999886655589999999998775 332 33347887766 7777765211 257777776652
Q ss_pred ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC--ceeecCCCccceeEEEEeeCCEEEEEeCCCC
Q 044808 226 KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE--TLWFLPPWHLGIDMFVSHRGNQFFIRRSDGG 303 (623)
Q Consensus 226 ~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~--~~~~l~~~~~~~~~~~~~dg~~ly~sn~~g~ 303 (623)
-...|. .+.....++..+|-+.. ++.++ ....|++.|+...+ ....+..+ ....++|.|-.|.+.+..
T Consensus 92 -ylRYF~-GH~~~V~sL~~sP~~d~-FlS~S--~D~tvrLWDlR~~~cqg~l~~~~~---pi~AfDp~GLifA~~~~~-- 161 (311)
T KOG1446|consen 92 -YLRYFP-GHKKRVNSLSVSPKDDT-FLSSS--LDKTVRLWDLRVKKCQGLLNLSGR---PIAAFDPEGLIFALANGS-- 161 (311)
T ss_pred -eEEEcC-CCCceEEEEEecCCCCe-EEecc--cCCeEEeeEecCCCCceEEecCCC---cceeECCCCcEEEEecCC--
Confidence 233343 23334567788997754 44332 23467777776544 12122222 124577766444443332
Q ss_pred CCeEEEEEeCCCC--Cc-eeeEEcCCCCceEeE--EEEeCCEEEEEEeeCCcceEEEEECCCCCCCcccccCCceeecCC
Q 044808 304 FHSDVLTCPVDNT--FE-TTVLIPHRERVRVEE--VRLFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFK 378 (623)
Q Consensus 304 ~~~~L~~~d~~~~--~~-~~~li~~~~d~~i~~--~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~ 378 (623)
. .|-.+|+..- ++ ....+.......... ++..++.|+++...+ .+++++.=. |... ..+....
T Consensus 162 ~--~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s---~~~~lDAf~-G~~~------~tfs~~~ 229 (311)
T KOG1446|consen 162 E--LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNAS---FIYLLDAFD-GTVK------STFSGYP 229 (311)
T ss_pred C--eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCC---cEEEEEccC-CcEe------eeEeecc
Confidence 1 3444554432 12 122333222222333 445567777777543 366666433 5422 1122111
Q ss_pred CceEEEeeeccccCCcCCceEEEEeecCCCCCeEEEEECCCCcEEE
Q 044808 379 SELCISRIHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTGISVL 424 (623)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~ 424 (623)
....+ .....+++|+..+ ++.++ -++++.+++++|....
T Consensus 230 ~~~~~---~~~a~ftPds~Fv-l~gs~---dg~i~vw~~~tg~~v~ 268 (311)
T KOG1446|consen 230 NAGNL---PLSATFTPDSKFV-LSGSD---DGTIHVWNLETGKKVA 268 (311)
T ss_pred CCCCc---ceeEEECCCCcEE-EEecC---CCcEEEEEcCCCcEee
Confidence 11101 0123345666544 43322 3588889988887543
No 197
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=97.20 E-value=0.0067 Score=61.32 Aligned_cols=68 Identities=16% Similarity=0.201 Sum_probs=48.1
Q ss_pred EeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccC----ccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCC
Q 044808 152 ITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQ----GCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQ 224 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~----~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~ 224 (623)
+-..++||||++||-+.-..++++||+.|-.+.- +.. ++-.++||||| .|+-...+. .|.+++..+++
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~-t~KgH~~WVlcvawsPDgk~iASG~~dg----~I~lwdpktg~ 190 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF-TCKGHKNWVLCVAWSPDGKKIASGSKDG----SIRLWDPKTGQ 190 (480)
T ss_pred EEEEEecCCCceEEecCCCceEEeeccCCCCcce-eecCCccEEEEEEECCCcchhhccccCC----eEEEecCCCCC
Confidence 3357999999999998766699999999866543 222 23359999999 565444332 57777776664
No 198
>COG0627 Predicted esterase [General function prediction only]
Probab=97.16 E-value=0.0013 Score=67.45 Aligned_cols=126 Identities=14% Similarity=0.070 Sum_probs=78.7
Q ss_pred CCCccEEEEEcCCCCCCCCCCCCchhhhHHHH-HCCcEEEEEec--------------cCC-CcCChhHHHcccccCCCc
Q 044808 468 DGSDPLLLFGYGSYGLGPSSYSNSIASRLTIL-DRGIIFAIAHV--------------RGG-DEKGKQWHENGKLLNKRN 531 (623)
Q Consensus 468 ~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~-~~G~~v~~~~~--------------RG~-~~~G~~~~~~~~~~~~~~ 531 (623)
+.+.|++++.||--. . .+.+-.....+..+ ..|++++.+|. .|+ .+|=.+|.+.....+ ..
T Consensus 51 ~~~ipV~~~l~G~t~-~-~~~~~~~~g~~~~a~~~g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~-~~ 127 (316)
T COG0627 51 GRDIPVLYLLSGLTC-N-EPNVYLLDGLRRQADESGWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASG-PY 127 (316)
T ss_pred CCCCCEEEEeCCCCC-C-CCceEeccchhhhhhhcCeEEecCCCCcccCCCCccccccCCCccceecccccCccccC-cc
Confidence 467788888887321 1 12222112223333 35888877632 343 234356666542222 35
Q ss_pred hHhHHHHH-HH-HHHHcCCCCC--CcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchhhhhhCC
Q 044808 532 TFTDFIAC-AD-YLIKSNYCSE--DNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVLTTILFY 596 (623)
Q Consensus 532 ~~~D~~~~-~~-~l~~~~~~d~--~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~~ 596 (623)
.+.+++.- +- .+.+..-++. ++.+|.|.|.||+-++.++..+||+|+.+.+.+|+++..+.+...
T Consensus 128 q~~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~sS~Sg~~~~s~~~~~~ 196 (316)
T COG0627 128 QWETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSASSFSGILSPSSPWGPT 196 (316)
T ss_pred chhHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhceecccccccccccccccc
Confidence 66676643 11 2333444555 399999999999999999999999999999999999987444333
No 199
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.033 Score=55.14 Aligned_cols=156 Identities=11% Similarity=0.070 Sum_probs=86.4
Q ss_pred EEEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccC-ccce-eEEecCCeEEEEEeCCCCCCeEEEEECCCCCccc
Q 044808 150 YRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQ-GCLE-FEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSKD 227 (623)
Q Consensus 150 ~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~-~~~~-~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~d 227 (623)
-.|..+..||-+....-+.-..+|++||+.+.+-.- .+. .... .++.|.|-+|-+..+. . .|.++++..=...+
T Consensus 101 ~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg-~l~~~~~pi~AfDp~GLifA~~~~~-~--~IkLyD~Rs~dkgP 176 (311)
T KOG1446|consen 101 KRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQG-LLNLSGRPIAAFDPEGLIFALANGS-E--LIKLYDLRSFDKGP 176 (311)
T ss_pred ceEEEEEecCCCCeEEecccCCeEEeeEecCCCCce-EEecCCCcceeECCCCcEEEEecCC-C--eEEEEEecccCCCC
Confidence 367788999988754444333389999998654321 111 1123 7888888333333322 1 35555543221112
Q ss_pred EEEE--eecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceee---cCCCccc--eeEEEEeeCCEEEEEeC
Q 044808 228 TCLY--RTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWF---LPPWHLG--IDMFVSHRGNQFFIRRS 300 (623)
Q Consensus 228 ~lv~--~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~---l~~~~~~--~~~~~~~dg~~ly~sn~ 300 (623)
-..| ..++..-+-.+.+||||++|++... .+.+|++|.=+|. .+. ..+...+ ....++||++.++.+..
T Consensus 177 F~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~---~s~~~~lDAf~G~-~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~ 252 (311)
T KOG1446|consen 177 FTTFSITDNDEAEWTDLEFSPDGKSILLSTN---ASFIYLLDAFDGT-VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD 252 (311)
T ss_pred ceeEccCCCCccceeeeEEcCCCCEEEEEeC---CCcEEEEEccCCc-EeeeEeeccCCCCcceeEEECCCCcEEEEecC
Confidence 2222 2222122346789999999998654 3578999998886 211 1222222 23457898764444433
Q ss_pred CCCCCeEEEEEeCCCCC
Q 044808 301 DGGFHSDVLTCPVDNTF 317 (623)
Q Consensus 301 ~g~~~~~L~~~d~~~~~ 317 (623)
+ ++|..++++++.
T Consensus 253 d----g~i~vw~~~tg~ 265 (311)
T KOG1446|consen 253 D----GTIHVWNLETGK 265 (311)
T ss_pred C----CcEEEEEcCCCc
Confidence 3 356666666653
No 200
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=97.15 E-value=0.0049 Score=61.89 Aligned_cols=111 Identities=13% Similarity=0.193 Sum_probs=70.9
Q ss_pred CcEEEeeeEECCCCCEEEEEEeCc-eEEEEECCCCCccccc---cCccceeEEecCC-eEEEEEeCCCCCCeEE-EEECC
Q 044808 148 ENYRITAFKVSPNNKLVAFRENCG-TVCVIDSETGAPAEKP---IQGCLEFEWAGDE-AFLYTRRNAIAEPQVW-FHKLG 221 (623)
Q Consensus 148 ~~~~l~~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~~~---i~~~~~~~WspDg-~l~y~~~d~~~~~~v~-~~~lg 221 (623)
|+..+..++|.+||..++-++-.. .|.|||+.+|..++.. +.+.+-+.||||| .||-++.|.. ..|| .++--
T Consensus 194 gh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~dav--frlw~e~q~w 271 (445)
T KOG2139|consen 194 GHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAV--FRLWQENQSW 271 (445)
T ss_pred CCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccce--eeeehhcccc
Confidence 456688999999999998886655 8999999999876532 2233348999999 5665554431 1455 33333
Q ss_pred CCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEEC
Q 044808 222 EEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDV 268 (623)
Q Consensus 222 t~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl 268 (623)
|. + ..+.. ++..-...|||+|++|+|.... ...||-+..
T Consensus 272 t~--e-rw~lg---sgrvqtacWspcGsfLLf~~sg--sp~lysl~f 310 (445)
T KOG2139|consen 272 TK--E-RWILG---SGRVQTACWSPCGSFLLFACSG--SPRLYSLTF 310 (445)
T ss_pred ee--c-ceecc---CCceeeeeecCCCCEEEEEEcC--CceEEEEee
Confidence 32 1 22221 2234456799999999986542 345555543
No 201
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.11 E-value=0.15 Score=59.82 Aligned_cols=191 Identities=12% Similarity=0.110 Sum_probs=103.8
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCC----cc--cc-ccC---ccceeEEecCC-eEEEEEeCCCCCCeEEEEE
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGA----PA--EK-PIQ---GCLEFEWAGDE-AFLYTRRNAIAEPQVWFHK 219 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~----~~--~~-~i~---~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~ 219 (623)
.+..+.|||||++||-+...+.|+|||+.+.. .. +. .+. .+..++|++.. ..+.+...+ ..|.+++
T Consensus 485 ~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~D---g~v~lWd 561 (793)
T PLN00181 485 LVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFE---GVVQVWD 561 (793)
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCC---CeEEEEE
Confidence 36678999999999998877799999986421 10 00 111 12348998764 544444321 1577788
Q ss_pred CCCCCcccEEEEeecCCceeEEEEEcC-CCcEEEEEeecceeeEEEEEECCCCCceeecCCCcccee-EEEEe-eCCEEE
Q 044808 220 LGEEQSKDTCLYRTREDLFDLTLEASE-SKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGID-MFVSH-RGNQFF 296 (623)
Q Consensus 220 lgt~~~~d~lv~~~~~~~~~~~~~~S~-Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~-~~~~~-dg~~ly 296 (623)
+.+++ ....+. .+......+.++| ++.+|+..+. ...|.+.|+.++.....+.. ...+. ..+.+ +|..|+
T Consensus 562 ~~~~~--~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~---Dg~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~g~~la 634 (793)
T PLN00181 562 VARSQ--LVTEMK-EHEKRVWSIDYSSADPTLLASGSD---DGSVKLWSINQGVSIGTIKT-KANICCVQFPSESGRSLA 634 (793)
T ss_pred CCCCe--EEEEec-CCCCCEEEEEEcCCCCCEEEEEcC---CCEEEEEECCCCcEEEEEec-CCCeEEEEEeCCCCCEEE
Confidence 87653 222333 2333455678886 6776554322 34677888876651222221 11222 23433 445444
Q ss_pred EEeCCCCCCeEEEEEeCCCCCceee-EEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECC
Q 044808 297 IRRSDGGFHSDVLTCPVDNTFETTV-LIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 297 ~sn~~g~~~~~L~~~d~~~~~~~~~-li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
....+ ..|..+|+.+...... +..+.. .+..+.+..+..+++...++. |.++++.
T Consensus 635 tgs~d----g~I~iwD~~~~~~~~~~~~~h~~--~V~~v~f~~~~~lvs~s~D~~--ikiWd~~ 690 (793)
T PLN00181 635 FGSAD----HKVYYYDLRNPKLPLCTMIGHSK--TVSYVRFVDSSTLVSSSTDNT--LKLWDLS 690 (793)
T ss_pred EEeCC----CeEEEEECCCCCccceEecCCCC--CEEEEEEeCCCEEEEEECCCE--EEEEeCC
Confidence 44333 3577777765432111 333322 355666555455556655553 7777775
No 202
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.10 E-value=0.04 Score=56.23 Aligned_cols=198 Identities=15% Similarity=0.197 Sum_probs=102.4
Q ss_pred EeeeEECCCCCEEEEEEeCc--eEEEEECCCCCcccc-ccCccce-eEEecCCeEEEEEeCCCCCCeEEEEECCCCCcc-
Q 044808 152 ITAFKVSPNNKLVAFRENCG--TVCVIDSETGAPAEK-PIQGCLE-FEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSK- 226 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~--~l~v~dl~tg~~~~~-~i~~~~~-~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~- 226 (623)
...+++|.|||++.+..-.- .+-|+|++.++++.+ .+++|.. +-|.++ +|+-.+.|. .+....++.....
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~-~F~~lC~DG----sl~~v~Ld~~Gk~~ 171 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNR-GFSMLCGDG----SLLTVTLDADGKEA 171 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETT-EEEEEETTS----CEEEEEETSTSSEE
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCC-ceEEEecCC----ceEEEEECCCCCEe
Confidence 35679999999977664443 899999999998864 5778876 555544 344444332 2333344322111
Q ss_pred --cEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-c----eeecCCCc--c-----cee-EEEEee
Q 044808 227 --DTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-T----LWFLPPWH--L-----GID-MFVSHR 291 (623)
Q Consensus 227 --d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~----~~~l~~~~--~-----~~~-~~~~~d 291 (623)
...+|...++..+....++.++.+++|.+- ...||-+++.... + +..+...+ + |-+ ..+.+.
T Consensus 172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy---~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~ 248 (342)
T PF06433_consen 172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSY---EGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAA 248 (342)
T ss_dssp EEEEEESSTTTS-B-S--EEETTTTEEEEEBT---TSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETT
T ss_pred EeeccccCCCCcccccccceECCCCeEEEEec---CCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccc
Confidence 112443222223334445555544455443 2478888887765 1 22222111 1 111 234455
Q ss_pred CCEEEE-EeCCC-----CCCeEEEEEeCCCCCc-eeeEEcCCCCceEeEEEEeCC--EEEEEEeeCCcceEEEEECCCCC
Q 044808 292 GNQFFI-RRSDG-----GFHSDVLTCPVDNTFE-TTVLIPHRERVRVEEVRLFAD--HIAVYELEEGLPKITTYCLPPVG 362 (623)
Q Consensus 292 g~~ly~-sn~~g-----~~~~~L~~~d~~~~~~-~~~li~~~~d~~i~~~~~~~~--~Lv~~~~~~g~~~l~v~~l~~~g 362 (623)
.++||+ .+++. .+-..|+.+|+++.+. .++-+++ .+.++.++.+ =+++.... +...|.++|..+ |
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~----~~~Si~Vsqd~~P~L~~~~~-~~~~l~v~D~~t-G 322 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEH----PIDSIAVSQDDKPLLYALSA-GDGTLDVYDAAT-G 322 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEE----EESEEEEESSSS-EEEEEET-TTTEEEEEETTT--
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCC----ccceEEEccCCCcEEEEEcC-CCCeEEEEeCcC-C
Confidence 678988 54321 2346799999988753 2222221 2446666653 24443322 234588899876 6
Q ss_pred C
Q 044808 363 E 363 (623)
Q Consensus 363 ~ 363 (623)
+
T Consensus 323 k 323 (342)
T PF06433_consen 323 K 323 (342)
T ss_dssp -
T ss_pred c
Confidence 5
No 203
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.08 E-value=0.19 Score=51.59 Aligned_cols=231 Identities=13% Similarity=0.022 Sum_probs=120.8
Q ss_pred eeEECCCCCEEEEEEeCc-eEEEEECCCCCccccccCc-cceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcccEEEE
Q 044808 154 AFKVSPNNKLVAFRENCG-TVCVIDSETGAPAEKPIQG-CLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSKDTCLY 231 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~~~i~~-~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~ 231 (623)
.+.|-|+++.|.|+-=.+ .|+-+|.++|+...-..+. ..+.....++.++.+... .+++.+..++.. .+++.
T Consensus 29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~~-----g~~~~~~~~~~~-~t~~~ 102 (307)
T COG3386 29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACEH-----GVRLLDPDTGGK-ITLLA 102 (307)
T ss_pred CccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEcc-----ccEEEeccCCce-eEEec
Confidence 469999999887764333 8999999988754333333 233555555544444422 144444433211 12332
Q ss_pred eec-C-C-ceeEEEEEcCCCcEEEEEeec-----c----eeeEEEEEECCCCCceeecCCCccc-eeEEEEeeCCEEEEE
Q 044808 232 RTR-E-D-LFDLTLEASESKKFLFVKSKT-----K----VTGFVYYFDVSRPETLWFLPPWHLG-IDMFVSHRGNQFFIR 298 (623)
Q Consensus 232 ~~~-~-~-~~~~~~~~S~Dg~~l~i~s~~-----~----~~s~l~~~dl~~~~~~~~l~~~~~~-~~~~~~~dg~~ly~s 298 (623)
+.. + + ...=...+.|||++ ++.... . ..-.||+++..+.. .+++...-.. -...|+||+++||++
T Consensus 103 ~~~~~~~~~r~ND~~v~pdG~~-wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~-~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 103 EPEDGLPLNRPNDGVVDPDGRI-WFGDMGYFDLGKSEERPTGSLYRVDPDGGV-VRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred cccCCCCcCCCCceeEcCCCCE-EEeCCCccccCccccCCcceEEEEcCCCCE-EEeecCcEEecCceEECCCCCEEEEE
Confidence 211 1 1 11113456788876 444433 1 12479999975433 3333321100 013589999999995
Q ss_pred eCCCCCCeEEEEEeCCC--CC---ceee-EEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCCCcccccCCc
Q 044808 299 RSDGGFHSDVLTCPVDN--TF---ETTV-LIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGR 372 (623)
Q Consensus 299 n~~g~~~~~L~~~d~~~--~~---~~~~-li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~ 372 (623)
+.. ..+|++++++. .. .... .....+. ...++.++.+..++.....+-..|.+++.+ |+.+ .
T Consensus 181 DT~---~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G-~PDG~~vDadG~lw~~a~~~g~~v~~~~pd--G~l~------~ 248 (307)
T COG3386 181 DTP---ANRIHRYDLDPATGPIGGRRGFVDFDEEPG-LPDGMAVDADGNLWVAAVWGGGRVVRFNPD--GKLL------G 248 (307)
T ss_pred eCC---CCeEEEEecCcccCccCCcceEEEccCCCC-CCCceEEeCCCCEEEecccCCceEEEECCC--CcEE------E
Confidence 543 35788887652 11 1112 2222222 345788877654443333333578888887 6643 5
Q ss_pred eeecCCCceEEEeeeccccCCcCCceEEEEeecCCCC
Q 044808 373 TVDIFKSELCISRIHGIRDSQFSSSILRICFYTMRMP 409 (623)
Q Consensus 373 ~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P 409 (623)
++.+|....+. ..+. .++.++++++-.....+
T Consensus 249 ~i~lP~~~~t~----~~Fg-G~~~~~L~iTs~~~~~~ 280 (307)
T COG3386 249 EIKLPVKRPTN----PAFG-GPDLNTLYITSARSGMS 280 (307)
T ss_pred EEECCCCCCcc----ceEe-CCCcCEEEEEecCCCCC
Confidence 67777422111 1111 23457777766555544
No 204
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=97.04 E-value=0.16 Score=49.52 Aligned_cols=155 Identities=13% Similarity=0.163 Sum_probs=86.6
Q ss_pred cEEEeeeEECCCCCEEEEEEeCceEEEEECCCCCccc-cccCc----cceeEEecCCeEEEEEe-CCCCCCeEEEEECCC
Q 044808 149 NYRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAE-KPIQG----CLEFEWAGDEAFLYTRR-NAIAEPQVWFHKLGE 222 (623)
Q Consensus 149 ~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~-~~i~~----~~~~~WspDg~l~y~~~-d~~~~~~v~~~~lgt 222 (623)
.-++..++|||.|++||-++-..+..|+.-..++..- .+|++ +++++||++|.++-+.. |. .||.+.+..
T Consensus 61 krsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDK----SVWiWe~de 136 (312)
T KOG0645|consen 61 KRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDK----SVWIWEIDE 136 (312)
T ss_pred hheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCC----eEEEEEecC
Confidence 4578899999999999999877777777666665421 24443 45699999995554543 32 599998875
Q ss_pred CCccc-EEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeec---CCCccceeE-EEEeeCCEEEE
Q 044808 223 EQSKD-TCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFL---PPWHLGIDM-FVSHRGNQFFI 297 (623)
Q Consensus 223 ~~~~d-~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l---~~~~~~~~~-~~~~dg~~ly~ 297 (623)
+.+-+ .-|.++ +.+-.=.+.|.|....|+ +.+-.++-.+|.-+. +.. +.++ ..+..-+.. .|++.|.++.-
T Consensus 137 ddEfec~aVL~~-HtqDVK~V~WHPt~dlL~-S~SYDnTIk~~~~~~-ddd-W~c~~tl~g~~~TVW~~~F~~~G~rl~s 212 (312)
T KOG0645|consen 137 DDEFECIAVLQE-HTQDVKHVIWHPTEDLLF-SCSYDNTIKVYRDED-DDD-WECVQTLDGHENTVWSLAFDNIGSRLVS 212 (312)
T ss_pred CCcEEEEeeecc-ccccccEEEEcCCcceeE-EeccCCeEEEEeecC-CCC-eeEEEEecCccceEEEEEecCCCceEEE
Confidence 43211 113332 111112456788665544 222222333443332 333 4333 223222222 46777777776
Q ss_pred -EeCCCCCCeEEEE--EeCC
Q 044808 298 -RRSDGGFHSDVLT--CPVD 314 (623)
Q Consensus 298 -sn~~g~~~~~L~~--~d~~ 314 (623)
++.. ..+|++ .++.
T Consensus 213 ~sdD~---tv~Iw~~~~~~~ 229 (312)
T KOG0645|consen 213 CSDDG---TVSIWRLYTDLS 229 (312)
T ss_pred ecCCc---ceEeeeeccCcc
Confidence 5543 466776 5543
No 205
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=97.01 E-value=0.015 Score=66.20 Aligned_cols=139 Identities=13% Similarity=0.099 Sum_probs=78.6
Q ss_pred cEEEeeeEECCCCCEEEEEEeCceEEEEECCC---CCcc--------cc------ccC----ccceeEEecCCeEEEEE-
Q 044808 149 NYRITAFKVSPNNKLVAFRENCGTVCVIDSET---GAPA--------EK------PIQ----GCLEFEWAGDEAFLYTR- 206 (623)
Q Consensus 149 ~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~t---g~~~--------~~------~i~----~~~~~~WspDg~l~y~~- 206 (623)
.-++..++|||||++||.+.|...|.||+-+. +... .+ .+. .+..++|+||+.++.+.
T Consensus 69 ~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s 148 (942)
T KOG0973|consen 69 DGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVS 148 (942)
T ss_pred cCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEec
Confidence 34678899999999999999988666666652 1111 00 111 12249999999655554
Q ss_pred eCCCCCCeEEEEECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcc---c
Q 044808 207 RNAIAEPQVWFHKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHL---G 283 (623)
Q Consensus 207 ~d~~~~~~v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~---~ 283 (623)
.|. .|..++..+- +...++. .+....-++.|.|-|+|++-++.++ +-.||. ..+-.-.+.+.+..+ +
T Consensus 149 ~Dn----sViiwn~~tF--~~~~vl~-~H~s~VKGvs~DP~Gky~ASqsdDr-tikvwr--t~dw~i~k~It~pf~~~~~ 218 (942)
T KOG0973|consen 149 LDN----SVIIWNAKTF--ELLKVLR-GHQSLVKGVSWDPIGKYFASQSDDR-TLKVWR--TSDWGIEKSITKPFEESPL 218 (942)
T ss_pred ccc----eEEEEccccc--eeeeeee-cccccccceEECCccCeeeeecCCc-eEEEEE--cccceeeEeeccchhhCCC
Confidence 333 3555665554 2233443 2333455788999999987554332 233443 222111222322221 1
Q ss_pred ee----EEEEeeCCEEEE
Q 044808 284 ID----MFVSHRGNQFFI 297 (623)
Q Consensus 284 ~~----~~~~~dg~~ly~ 297 (623)
.. ..|+|||.+|..
T Consensus 219 ~T~f~RlSWSPDG~~las 236 (942)
T KOG0973|consen 219 TTFFLRLSWSPDGHHLAS 236 (942)
T ss_pred cceeeecccCCCcCeecc
Confidence 11 258999998777
No 206
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=96.98 E-value=0.0056 Score=66.65 Aligned_cols=137 Identities=13% Similarity=0.094 Sum_probs=83.7
Q ss_pred CCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCC---------Cc-----hhhhHHHHHCCcEEEEEeccCCCcC
Q 044808 451 GEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYS---------NS-----IASRLTILDRGIIFAIAHVRGGDEK 516 (623)
Q Consensus 451 G~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~---------~~-----~~~~~~~~~~G~~v~~~~~RG~~~~ 516 (623)
+..+.-|++-.++. ....|+||+.+||||.+...++ +. ...-..|.+.+.++.+=+++|.| |
T Consensus 60 ~~~lFyw~~~s~~~---~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~~~~l~iDqP~G~G-~ 135 (462)
T PTZ00472 60 DKHYFYWAFGPRNG---NPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNEAYVIYVDQPAGVG-F 135 (462)
T ss_pred CceEEEEEEEcCCC---CCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccccCeEEEeCCCCcC-c
Confidence 45566665554432 3467999999999997743211 00 01234677777666665578854 3
Q ss_pred ChhHHHcccc-cCCCchHhHHHHHHHHHH-HcCCCCCCcEEEEEeChHHHHHHHHHHh---CC---C----eeeEEEecC
Q 044808 517 GKQWHENGKL-LNKRNTFTDFIACADYLI-KSNYCSEDNLCIEGGSAGGMLIGAVLNM---RP---E----LFKVAVADV 584 (623)
Q Consensus 517 G~~~~~~~~~-~~~~~~~~D~~~~~~~l~-~~~~~d~~ri~i~G~S~GG~l~~~~~~~---~p---~----~f~a~v~~~ 584 (623)
+.. ..... ..-....+|+...++.+. +.+.....++.|.|.||||..+-.++.+ +. + -+|.++.+.
T Consensus 136 S~~--~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~inLkGi~IGN 213 (462)
T PTZ00472 136 SYA--DKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYINLAGLAVGN 213 (462)
T ss_pred ccC--CCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCceeeeEEEEEec
Confidence 221 11111 111345677777777544 4455556899999999999877544433 11 1 378999999
Q ss_pred Cccchhhhh
Q 044808 585 PSVDVLTTI 593 (623)
Q Consensus 585 ~~~d~~~~~ 593 (623)
|++|.....
T Consensus 214 g~~dp~~q~ 222 (462)
T PTZ00472 214 GLTDPYTQY 222 (462)
T ss_pred cccChhhhc
Confidence 999987443
No 207
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=96.91 E-value=0.016 Score=65.97 Aligned_cols=112 Identities=12% Similarity=0.131 Sum_probs=72.0
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccC----ccceeEEecCCeEEEEEeCCCCCC-eEEEEECCCCCc
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQ----GCLEFEWAGDEAFLYTRRNAIAEP-QVWFHKLGEEQS 225 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~----~~~~~~WspDg~l~y~~~d~~~~~-~v~~~~lgt~~~ 225 (623)
.+..+.||||+++||-..-.+.|.|||..+.+.+. .+. -+.++.|.|=|+++-+..|+ |. .||+ +.+=+.
T Consensus 131 DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~-vl~~H~s~VKGvs~DP~Gky~ASqsdD--rtikvwr--t~dw~i 205 (942)
T KOG0973|consen 131 DVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK-VLRGHQSLVKGVSWDPIGKYFASQSDD--RTLKVWR--TSDWGI 205 (942)
T ss_pred ccceeccCCCccEEEEecccceEEEEccccceeee-eeecccccccceEECCccCeeeeecCC--ceEEEEE--ccccee
Confidence 46788999999999988766689999999986554 333 34579999999766565543 44 5655 222111
Q ss_pred ccEE---EEeec-CCceeEEEEEcCCCcEEEEEe-ecceeeEEEEEEC
Q 044808 226 KDTC---LYRTR-EDLFDLTLEASESKKFLFVKS-KTKVTGFVYYFDV 268 (623)
Q Consensus 226 ~d~l---v~~~~-~~~~~~~~~~S~Dg~~l~i~s-~~~~~s~l~~~dl 268 (623)
... .|++. -..|+..++|||||+||+... .+...+.+-+++-
T Consensus 206 -~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR 252 (942)
T KOG0973|consen 206 -EKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER 252 (942)
T ss_pred -eEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence 111 23321 234778899999999987543 2233344444443
No 208
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=96.90 E-value=0.014 Score=59.87 Aligned_cols=186 Identities=14% Similarity=0.097 Sum_probs=109.0
Q ss_pred EEEeeeEECCC--CCEEEEEEeCceEEEEECCCCCccccccC----ccceeEEecCCeEEEE-EeCCCCCCeEEEEECCC
Q 044808 150 YRITAFKVSPN--NKLVAFRENCGTVCVIDSETGAPAEKPIQ----GCLEFEWAGDEAFLYT-RRNAIAEPQVWFHKLGE 222 (623)
Q Consensus 150 ~~l~~~~~SPD--G~~lA~~~~~~~l~v~dl~tg~~~~~~i~----~~~~~~WspDg~l~y~-~~d~~~~~~v~~~~lgt 222 (623)
-.++.+.|+|. +.-||-+...+++.+|++.+-..+.+ ++ .+.-++|-|+|+++-+ ++|.++| ++++.+
T Consensus 218 ~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~-l~gH~~RVs~VafHPsG~~L~TasfD~tWR----lWD~~t 292 (459)
T KOG0272|consen 218 SRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD-LEGHLARVSRVAFHPSGKFLGTASFDSTWR----LWDLET 292 (459)
T ss_pred cceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh-hhcchhhheeeeecCCCceeeecccccchh----hccccc
Confidence 36788999998 66777776666899999988776653 33 2334999999966555 5565543 367777
Q ss_pred CCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecC-CCcccee-EEEEeeCCEEEE-Ee
Q 044808 223 EQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLP-PWHLGID-MFVSHRGNQFFI-RR 299 (623)
Q Consensus 223 ~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~-~~~~~~~-~~~~~dg~~ly~-sn 299 (623)
+. .++++|.+..-..++++.+||..+.- .+..+--.+.|+.++. -..+. .+...+. ..|+|.|-++.- +.
T Consensus 293 k~---ElL~QEGHs~~v~~iaf~~DGSL~~t---GGlD~~~RvWDlRtgr-~im~L~gH~k~I~~V~fsPNGy~lATgs~ 365 (459)
T KOG0272|consen 293 KS---ELLLQEGHSKGVFSIAFQPDGSLAAT---GGLDSLGRVWDLRTGR-CIMFLAGHIKEILSVAFSPNGYHLATGSS 365 (459)
T ss_pred ch---hhHhhcccccccceeEecCCCceeec---cCccchhheeecccCc-EEEEecccccceeeEeECCCceEEeecCC
Confidence 53 45667766554567889999986542 2222223445777775 22222 3322222 257887654443 33
Q ss_pred CCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEE--eCCEEEEEEeeCCcceEE
Q 044808 300 SDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRL--FADHIAVYELEEGLPKIT 354 (623)
Q Consensus 300 ~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~--~~~~Lv~~~~~~g~~~l~ 354 (623)
.+ .-+|+. +..... --.||.+.+. +..+.. ..++.+++...+..-+|+
T Consensus 366 Dn---t~kVWD--LR~r~~-ly~ipAH~nl-VS~Vk~~p~~g~fL~TasyD~t~kiW 415 (459)
T KOG0272|consen 366 DN---TCKVWD--LRMRSE-LYTIPAHSNL-VSQVKYSPQEGYFLVTASYDNTVKIW 415 (459)
T ss_pred CC---cEEEee--eccccc-ceecccccch-hhheEecccCCeEEEEcccCcceeee
Confidence 22 345554 433322 1256655442 444443 346677777777654544
No 209
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.033 Score=59.57 Aligned_cols=194 Identities=12% Similarity=0.105 Sum_probs=110.5
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc-ccCc-cceeEEecCC--eEEEEEeCCCCCCeEEEEEC--CC--
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK-PIQG-CLEFEWAGDE--AFLYTRRNAIAEPQVWFHKL--GE-- 222 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~-~i~~-~~~~~WspDg--~l~y~~~d~~~~~~v~~~~l--gt-- 222 (623)
.+..+++.|-|.+||-+.+.++++||.++||.-+.. .+.. +..++|.|.+ .++-+..... +++.+- |+
T Consensus 402 ~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~----~~ivnp~~G~~~ 477 (733)
T KOG0650|consen 402 LVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGEC----VLIVNPIFGDRL 477 (733)
T ss_pred eEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCc----eEEeCccccchh
Confidence 466789999999999999999999999999986652 2333 3469999998 3544444332 111110 10
Q ss_pred -----------C---CcccE--EEEeec--------------CCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC
Q 044808 223 -----------E---QSKDT--CLYRTR--------------EDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE 272 (623)
Q Consensus 223 -----------~---~~~d~--lv~~~~--------------~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~ 272 (623)
. ...+. ..+... .+.-.-.+.|..+|.||.....+..+..|++..+....
T Consensus 478 e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~ 557 (733)
T KOG0650|consen 478 EVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRK 557 (733)
T ss_pred hhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEeccccc
Confidence 0 00000 011000 00112246799999999887766677788888887654
Q ss_pred ceeecCCCccceeE--EEEeeCCEEEE-EeCCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEE--eCCEEEEEEee
Q 044808 273 TLWFLPPWHLGIDM--FVSHRGNQFFI-RRSDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRL--FADHIAVYELE 347 (623)
Q Consensus 273 ~~~~l~~~~~~~~~--~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~--~~~~Lv~~~~~ 347 (623)
.+.-+....|... .|-|..-.|++ |.+. |..+|+......+-+++... .|..+++ .++.|++...+
T Consensus 558 -sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~------vRiYdL~kqelvKkL~tg~k--wiS~msihp~GDnli~gs~d 628 (733)
T KOG0650|consen 558 -SQSPFRKSKGLVQRVKFHPSKPYLFVATQRS------VRIYDLSKQELVKKLLTGSK--WISSMSIHPNGDNLILGSYD 628 (733)
T ss_pred -ccCchhhcCCceeEEEecCCCceEEEEeccc------eEEEehhHHHHHHHHhcCCe--eeeeeeecCCCCeEEEecCC
Confidence 2222222223222 35455556666 5543 44556544321111444332 3445554 45888887765
Q ss_pred CCcceEEEEECCC
Q 044808 348 EGLPKITTYCLPP 360 (623)
Q Consensus 348 ~g~~~l~v~~l~~ 360 (623)
+ ++..+|++-
T Consensus 629 ~---k~~WfDldl 638 (733)
T KOG0650|consen 629 K---KMCWFDLDL 638 (733)
T ss_pred C---eeEEEEccc
Confidence 4 477778875
No 210
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=96.85 E-value=0.03 Score=60.71 Aligned_cols=155 Identities=12% Similarity=0.155 Sum_probs=88.6
Q ss_pred CcEEEeeeEECCCCCEEEEEEeCc-eEEEEECCCCCccccccC-------ccceeEEecCC-eEEEEEeCCCCCCeEEEE
Q 044808 148 ENYRITAFKVSPNNKLVAFRENCG-TVCVIDSETGAPAEKPIQ-------GCLEFEWAGDE-AFLYTRRNAIAEPQVWFH 218 (623)
Q Consensus 148 ~~~~l~~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~~~i~-------~~~~~~WspDg-~l~y~~~d~~~~~~v~~~ 218 (623)
+...++..++||||++|||+.-.. .||-+..... .....++ .+..+.++-|+ .+++...+. . .+...
T Consensus 381 ~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~-vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~--~-~le~~ 456 (691)
T KOG2048|consen 381 EKENISCAAISPDGNLIAISTVSRTKIYRLQPDPN-VKVINVDDVPLALLDASAISFTIDKNKLFLVSKNI--F-SLEEF 456 (691)
T ss_pred CccceeeeccCCCCCEEEEeeccceEEEEeccCcc-eeEEEeccchhhhccceeeEEEecCceEEEEeccc--c-eeEEE
Confidence 455688899999999999996443 4554444331 1111111 22238888888 788877321 1 45555
Q ss_pred ECCCCCcccEEEEeec-CCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccc-ee-EEEEe-eCCE
Q 044808 219 KLGEEQSKDTCLYRTR-EDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLG-ID-MFVSH-RGNQ 294 (623)
Q Consensus 219 ~lgt~~~~d~lv~~~~-~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~-~~-~~~~~-dg~~ 294 (623)
.+.++..+...-+... .-.....+..|+||+||++.+ +...|+++++++.+ .+.+..+-.. +. ..+.| .-+.
T Consensus 457 el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~---t~g~I~v~nl~~~~-~~~l~~rln~~vTa~~~~~~~~~~ 532 (691)
T KOG2048|consen 457 ELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAIS---TRGQIFVYNLETLE-SHLLKVRLNIDVTAAAFSPFVRNR 532 (691)
T ss_pred EecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEe---ccceEEEEEcccce-eecchhccCcceeeeeccccccCc
Confidence 5555543221111111 222345678899999998754 34689999999886 4444433221 11 23443 3355
Q ss_pred EEE-EeCCCCCCeEEEEEeCCC
Q 044808 295 FFI-RRSDGGFHSDVLTCPVDN 315 (623)
Q Consensus 295 ly~-sn~~g~~~~~L~~~d~~~ 315 (623)
+.+ +.. .+++..|++.
T Consensus 533 lvvats~-----nQv~efdi~~ 549 (691)
T KOG2048|consen 533 LVVATSN-----NQVFEFDIEA 549 (691)
T ss_pred EEEEecC-----CeEEEEecch
Confidence 666 332 3677777743
No 211
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.18 Score=54.28 Aligned_cols=195 Identities=12% Similarity=0.065 Sum_probs=112.1
Q ss_pred EEEeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc-cc-C--ccceeEEecCCeEEEEEeCCCCCC-eEEEEECCCCC
Q 044808 150 YRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK-PI-Q--GCLEFEWAGDEAFLYTRRNAIAEP-QVWFHKLGEEQ 224 (623)
Q Consensus 150 ~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~-~i-~--~~~~~~WspDg~l~y~~~d~~~~~-~v~~~~lgt~~ 224 (623)
..+..+.|||+|++||.+...+.+.|||.++.+.+.. .. . .+..++|. +.++-.-. +. .+..+++...+
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGs----r~~~I~~~dvR~~~ 291 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGS----RDGKILNHDVRISQ 291 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEec----CCCcEEEEEEecch
Confidence 3567889999999999999888999999998876653 12 1 22349997 32222211 22 46666665543
Q ss_pred cccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeE-EEEeeCCEEEEEeCCCC
Q 044808 225 SKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDM-FVSHRGNQFFIRRSDGG 303 (623)
Q Consensus 225 ~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~-~~~~dg~~ly~sn~~g~ 303 (623)
..-. ... .+.+-..++.|++|+++++ +.+..+.+++.|..+......+......+.. .|.|...-|+.+..+ .
T Consensus 292 ~~~~-~~~-~H~qeVCgLkws~d~~~lA---SGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG-s 365 (484)
T KOG0305|consen 292 HVVS-TLQ-GHRQEVCGLKWSPDGNQLA---SGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG-S 365 (484)
T ss_pred hhhh-hhh-cccceeeeeEECCCCCeec---cCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC-C
Confidence 2111 122 1223357889999999975 4445678888888554423334444433332 577766555553332 3
Q ss_pred CCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCE--EEEEEeeCCcceEEEEECCC
Q 044808 304 FHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADH--IAVYELEEGLPKITTYCLPP 360 (623)
Q Consensus 304 ~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~--Lv~~~~~~g~~~l~v~~l~~ 360 (623)
....|...+..++.... .-+....|..+.|...+ |+...- ....+|.+++..+
T Consensus 366 ~D~~i~fwn~~~g~~i~---~vdtgsQVcsL~Wsk~~kEi~sthG-~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 366 ADRCIKFWNTNTGARID---SVDTGSQVCSLIWSKKYKELLSTHG-YSENQITLWKYPS 420 (484)
T ss_pred cccEEEEEEcCCCcEec---ccccCCceeeEEEcCCCCEEEEecC-CCCCcEEEEeccc
Confidence 33456666665553211 12223357778877643 444332 2334677777663
No 212
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=96.85 E-value=0.023 Score=54.53 Aligned_cols=116 Identities=16% Similarity=0.151 Sum_probs=74.5
Q ss_pred cEEEeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc--ccCcc-----c--eeEEecCCeEEEEEeCCCCCCeEEEEE
Q 044808 149 NYRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK--PIQGC-----L--EFEWAGDEAFLYTRRNAIAEPQVWFHK 219 (623)
Q Consensus 149 ~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~--~i~~~-----~--~~~WspDg~l~y~~~d~~~~~~v~~~~ 219 (623)
-.++..+.+-|||++|+-+-+.+++|||++-++..... ++... . .-..|||++.+-+...+. .++.++
T Consensus 167 ~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdk---tv~iwn 243 (311)
T KOG0315|consen 167 DTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDK---TVKIWN 243 (311)
T ss_pred CcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCc---eEEEEe
Confidence 36788899999999999999888999999988754332 12111 1 267899996555543221 466666
Q ss_pred CCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC
Q 044808 220 LGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE 272 (623)
Q Consensus 220 lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~ 272 (623)
..+- -+-.+..+ ...+|..+..+|.||+||+-.++ .. .+.+.+++.++
T Consensus 244 ~~~~-~kle~~l~-gh~rWvWdc~FS~dg~YlvTass-d~--~~rlW~~~~~k 291 (311)
T KOG0315|consen 244 TDDF-FKLELVLT-GHQRWVWDCAFSADGEYLVTASS-DH--TARLWDLSAGK 291 (311)
T ss_pred cCCc-eeeEEEee-cCCceEEeeeeccCccEEEecCC-CC--ceeecccccCc
Confidence 6543 11223333 34568889999999999875333 23 33444555544
No 213
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.85 E-value=0.0041 Score=60.69 Aligned_cols=102 Identities=15% Similarity=0.114 Sum_probs=64.1
Q ss_pred ccEEEEEcCCCCCCCCCCCCchhhhHHHHHC--CcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCC
Q 044808 471 DPLLLFGYGSYGLGPSSYSNSIASRLTILDR--GIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNY 548 (623)
Q Consensus 471 ~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~--G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 548 (623)
.|.|+++||.++.... |. .....+... -|.++.+|.||.|... . . ........+-++.+.++--
T Consensus 21 ~~~i~~~hg~~~~~~~--~~--~~~~~~~~~~~~~~~~~~d~~g~g~s~----~---~---~~~~~~~~~~~~~~~~~~~ 86 (282)
T COG0596 21 GPPLVLLHGFPGSSSV--WR--PVFKVLPALAARYRVIAPDLRGHGRSD----P---A---GYSLSAYADDLAALLDALG 86 (282)
T ss_pred CCeEEEeCCCCCchhh--hH--HHHHHhhccccceEEEEecccCCCCCC----c---c---cccHHHHHHHHHHHHHHhC
Confidence 4588999998765532 22 211222221 1999999999765543 0 0 1121222333333333211
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccc
Q 044808 549 CSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVD 588 (623)
Q Consensus 549 ~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 588 (623)
. .++.+.|+|+||.++..++.++|+.++.+|...+...
T Consensus 87 ~--~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~~~~~~~ 124 (282)
T COG0596 87 L--EKVVLVGHSMGGAVALALALRHPDRVRGLVLIGPAPP 124 (282)
T ss_pred C--CceEEEEecccHHHHHHHHHhcchhhheeeEecCCCC
Confidence 2 3399999999999999999999999999888876543
No 214
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=96.84 E-value=0.21 Score=52.77 Aligned_cols=193 Identities=15% Similarity=0.163 Sum_probs=115.7
Q ss_pred eeEECCCCCEEEEEEeCceEEEEECCCCCccccc-----cCccceeEEecCC---eEEEEEeCCCCCC-eEEEEECCCCC
Q 044808 154 AFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKP-----IQGCLEFEWAGDE---AFLYTRRNAIAEP-QVWFHKLGEEQ 224 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~-----i~~~~~~~WspDg---~l~y~~~d~~~~~-~v~~~~lgt~~ 224 (623)
.++||-|.+++|+.+.. .|+|.++ |+..-+.. +.++..+.|+|-| .|+|..-...+.| .+....+....
T Consensus 136 ~~k~s~~D~y~ARvv~~-sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s 213 (561)
T COG5354 136 VLKFSIDDKYVARVVGS-SLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS 213 (561)
T ss_pred eeeeeecchhhhhhccC-eEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC
Confidence 36899999999999655 6999998 65543322 2344469999985 4777765555566 77777776432
Q ss_pred cc-cEEEEeecCCceeEEEEEcCCCcEEEEEeecc--------eeeEEEEEECCCCCceeecCCCccc-eeEEEEeeCCE
Q 044808 225 SK-DTCLYRTREDLFDLTLEASESKKFLFVKSKTK--------VTGFVYYFDVSRPETLWFLPPWHLG-IDMFVSHRGNQ 294 (623)
Q Consensus 225 ~~-d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~--------~~s~l~~~dl~~~~~~~~l~~~~~~-~~~~~~~dg~~ 294 (623)
.. ..-+|+-. .+.+.|.+.|++|++....+ +.++||++++.... .+......+- ..+.|+|.++.
T Consensus 214 ~l~tk~lfk~~----~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~ 288 (561)
T COG5354 214 VLVTKNLFKVS----GVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSR 288 (561)
T ss_pred eeeeeeeEeec----ccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCc
Confidence 10 11122221 24567999999998876332 23789999988554 3222222222 24678999999
Q ss_pred EEE-EeCCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECC
Q 044808 295 FFI-RRSDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 295 ly~-sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
|.+ +.... ..+...++.+. -.-.+|+...-.+ -+++..+++++..-.+-...+.+++..
T Consensus 289 F~vi~g~~p---a~~s~~~lr~N--l~~~~Pe~~rNT~-~fsp~~r~il~agF~nl~gni~i~~~~ 348 (561)
T COG5354 289 FAVISGYMP---ASVSVFDLRGN--LRFYFPEQKRNTI-FFSPHERYILFAGFDNLQGNIEIFDPA 348 (561)
T ss_pred eeEEecccc---cceeecccccc--eEEecCCcccccc-cccCcccEEEEecCCccccceEEeccC
Confidence 988 74331 23444555432 1124455443222 345566777776666655566677665
No 215
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=96.84 E-value=0.54 Score=46.42 Aligned_cols=193 Identities=12% Similarity=0.136 Sum_probs=105.5
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccc-cccCccc--eeEEecCCeEEEE-EeCCCCCCeEEEEECCCCCcc
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAE-KPIQGCL--EFEWAGDEAFLYT-RRNAIAEPQVWFHKLGEEQSK 226 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~-~~i~~~~--~~~WspDg~l~y~-~~d~~~~~~v~~~~lgt~~~~ 226 (623)
.|..+.||+|.|+|.-++..+.|.|||..|..-+. .+++..+ .-+++|.|.++-. -.|. .-.||... +...+
T Consensus 57 Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN--~Csiy~ls--~~d~~ 132 (343)
T KOG0286|consen 57 KIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDN--KCSIYPLS--TRDAE 132 (343)
T ss_pred ceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCc--eeEEEecc--ccccc
Confidence 46678999999999999888899999998765432 2444444 4789999954432 2221 11565544 32111
Q ss_pred c-EEEEee--cCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcccee-EEEEe-eCCEEEE-EeC
Q 044808 227 D-TCLYRT--REDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGID-MFVSH-RGNQFFI-RRS 300 (623)
Q Consensus 227 d-~lv~~~--~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~-~~~~~-dg~~ly~-sn~ 300 (623)
. ..+-.+ .+..|..-+.+.+|++.| +.+ +....-+.|+++++....+..+...+- ..++| ++++|.- +-.
T Consensus 133 g~~~v~r~l~gHtgylScC~f~dD~~il--T~S--GD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD 208 (343)
T KOG0286|consen 133 GNVRVSRELAGHTGYLSCCRFLDDNHIL--TGS--GDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCD 208 (343)
T ss_pred ccceeeeeecCccceeEEEEEcCCCceE--ecC--CCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccc
Confidence 1 112111 234465556677777543 222 345566778888762333333433332 25667 4554443 222
Q ss_pred CCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeC-CEEEEEEeeCCcceEEEEECCC
Q 044808 301 DGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFA-DHIAVYELEEGLPKITTYCLPP 360 (623)
Q Consensus 301 ~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~-~~Lv~~~~~~g~~~l~v~~l~~ 360 (623)
. ..+|+ |+..+.-.+ -++.++ ..|..+..+. +.-+.+..+++.-++ ||+..
T Consensus 209 ~---~aklW--D~R~~~c~q-tF~ghe-sDINsv~ffP~G~afatGSDD~tcRl--yDlRa 260 (343)
T KOG0286|consen 209 K---SAKLW--DVRSGQCVQ-TFEGHE-SDINSVRFFPSGDAFATGSDDATCRL--YDLRA 260 (343)
T ss_pred c---ceeee--eccCcceeE-eecccc-cccceEEEccCCCeeeecCCCceeEE--EeecC
Confidence 2 23454 444443222 333332 3467777776 455667777776444 56653
No 216
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=96.83 E-value=0.012 Score=65.85 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=70.9
Q ss_pred EEEeeeEECCCCCEEEEEEeCceEEEEECCCCCccc---ccc-------Cccce-eEEecCC-eEEEEEeCCCCCCeEEE
Q 044808 150 YRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAE---KPI-------QGCLE-FEWAGDE-AFLYTRRNAIAEPQVWF 217 (623)
Q Consensus 150 ~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~---~~i-------~~~~~-~~WspDg-~l~y~~~d~~~~~~v~~ 217 (623)
..+..+.++|.|++||.+.-.++++|||+.+|.... ... ..+.. ++|+|+| +|++...+. .|..
T Consensus 139 apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~----~Vkv 214 (933)
T KOG1274|consen 139 APVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDN----TVKV 214 (933)
T ss_pred CceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCC----eEEE
Confidence 356778999999999999888899999999987532 111 11123 9999998 777766543 2444
Q ss_pred EECCCCCcccEEEEeec-CCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCC
Q 044808 218 HKLGEEQSKDTCLYRTR-EDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSR 270 (623)
Q Consensus 218 ~~lgt~~~~d~lv~~~~-~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~ 270 (623)
++..+-.. .-.+..+ ...-+..+.|||.|+||+-.. ..+.|.+.|.++
T Consensus 215 y~r~~we~--~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~---~~g~I~vWnv~t 263 (933)
T KOG1274|consen 215 YSRKGWEL--QFKLRDKLSSSKFSDLQWSPNGKYIAAST---LDGQILVWNVDT 263 (933)
T ss_pred EccCCcee--heeecccccccceEEEEEcCCCcEEeeec---cCCcEEEEeccc
Confidence 44433211 1111211 122245678999999987533 335666777664
No 217
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=96.80 E-value=0.011 Score=57.61 Aligned_cols=99 Identities=15% Similarity=0.131 Sum_probs=65.2
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccc--cccCccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCccc
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAE--KPIQGCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQSKD 227 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~--~~i~~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~~d 227 (623)
.+..+.+||||.+.|++-..+.+.+||+..|+-+. +.+..+.+++|+|+- .|.-.. +. .|..+++.++..-+
T Consensus 194 ~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at-~~----sIkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 194 YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAAT-AT----SIKIWDLESKAVVE 268 (315)
T ss_pred cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeecc-CC----ceEEEeccchhhhh
Confidence 46778999999999998766699999999998764 123344569999986 343322 11 36666666543211
Q ss_pred EEEEeec------CCceeEEEEEcCCCcEEEEE
Q 044808 228 TCLYRTR------EDLFDLTLEASESKKFLFVK 254 (623)
Q Consensus 228 ~lv~~~~------~~~~~~~~~~S~Dg~~l~i~ 254 (623)
.+-.+.. .+...++++||+||+.||-.
T Consensus 269 ~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g 301 (315)
T KOG0279|consen 269 ELKLDGIGPSSKAGDPICLSLAWSADGQTLFAG 301 (315)
T ss_pred hccccccccccccCCcEEEEEEEcCCCcEEEee
Confidence 1111111 12356788999999998753
No 218
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=96.70 E-value=0.014 Score=60.74 Aligned_cols=130 Identities=17% Similarity=0.090 Sum_probs=88.9
Q ss_pred eEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHC-CcEEEEEeccCCCcC---Chh---------
Q 044808 453 EIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDR-GIIFAIAHVRGGDEK---GKQ--------- 519 (623)
Q Consensus 453 ~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~-G~~v~~~~~RG~~~~---G~~--------- 519 (623)
++...|.|.. .+.--.||++=||+|+.....|. ...+..+++. ..||+.+||-|.+-+ |..
T Consensus 21 KLEyri~ydd-----~Ke~kaIvfiI~GfG~dan~~~~-d~~r~~iA~~fnvv~I~V~YHCf~~R~q~~A~~~~~~~D~~ 94 (403)
T PF11144_consen 21 KLEYRISYDD-----EKEIKAIVFIIPGFGADANSNYL-DFMREYIAKKFNVVVISVNYHCFCNRPQYGAKFYFDDIDKE 94 (403)
T ss_pred eeeEEeecCC-----CCCceEEEEEeCCcCCCcchHHH-HHHHHHHHHhCCEEEEEeeeeheeeccccCchhcCCHHHHH
Confidence 4455555543 23456888889999988775553 1456778876 999999999996532 110
Q ss_pred ----------H---------------------H----Hcc--------------------cccCCCchHhHHHHHHHHHH
Q 044808 520 ----------W---------------------H----ENG--------------------KLLNKRNTFTDFIACADYLI 544 (623)
Q Consensus 520 ----------~---------------------~----~~~--------------------~~~~~~~~~~D~~~~~~~l~ 544 (623)
+ . +++ ..+.|--..-|++.|+.+|.
T Consensus 95 iLk~~L~~i~i~~~~i~~~~~~~~~~~~L~~~I~~lK~~~~L~~d~kl~ls~tl~P~n~EYQN~GIMqAiD~INAl~~l~ 174 (403)
T PF11144_consen 95 ILKKSLEKINIDSESINTYDNAEQIYELLNQNITELKEQGILPQDYKLNLSCTLIPPNGEYQNFGIMQAIDIINALLDLK 174 (403)
T ss_pred HHHHHHHHcCccccccccchhHHHHHHHHHHHHHHHHhcCCCCCCcEEeEEEEecCCchhhhhhHHHHHHHHHHHHHHHH
Confidence 0 0 000 11222235579999999998
Q ss_pred HcCC--CCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccc
Q 044808 545 KSNY--CSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVD 588 (623)
Q Consensus 545 ~~~~--~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 588 (623)
+.=. .+.-++-..|+|+||||+..++--+|.+|.++|-..+.+-
T Consensus 175 k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~iDns~~~~ 220 (403)
T PF11144_consen 175 KIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVIDNSSYAL 220 (403)
T ss_pred HhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEEecCcccc
Confidence 8622 2234888899999999999999889999999998876553
No 219
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=96.69 E-value=0.16 Score=49.22 Aligned_cols=188 Identities=11% Similarity=0.146 Sum_probs=103.6
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc-ccCc----cceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCC
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK-PIQG----CLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQ 224 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~-~i~~----~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~ 224 (623)
.+..+.|.-||++||-+...+++.|++++.++.+.+ ...+ +..++|.|-. -++.+...++ .|.++++.++.
T Consensus 22 ~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk---~ir~wd~r~~k 98 (313)
T KOG1407|consen 22 KVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDK---TIRIWDIRSGK 98 (313)
T ss_pred cceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCc---eEEEEEeccCc
Confidence 456789999999999998777888888887765432 1111 1238998877 5555554321 35666665543
Q ss_pred cccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcc---ceeEEEEeeCCEEEE-EeC
Q 044808 225 SKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHL---GIDMFVSHRGNQFFI-RRS 300 (623)
Q Consensus 225 ~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~---~~~~~~~~dg~~ly~-sn~ 300 (623)
. ....+...+ .+.+.|||||+++++... ...|-.+|..+-. .+...+. ..+..|..++ .++| ||.
T Consensus 99 ~--~~~i~~~~e--ni~i~wsp~g~~~~~~~k---dD~it~id~r~~~---~~~~~~~~~e~ne~~w~~~n-d~Fflt~G 167 (313)
T KOG1407|consen 99 C--TARIETKGE--NINITWSPDGEYIAVGNK---DDRITFIDARTYK---IVNEEQFKFEVNEISWNNSN-DLFFLTNG 167 (313)
T ss_pred E--EEEeeccCc--ceEEEEcCCCCEEEEecC---cccEEEEEecccc---eeehhcccceeeeeeecCCC-CEEEEecC
Confidence 2 222222222 345689999999887443 2466677776543 1111111 1123344444 4666 775
Q ss_pred CCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECC
Q 044808 301 DGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 301 ~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
.| ...|+.++--.+- .-+-+|..+..--.+++.++++.+-.. +. .+.++|++
T Consensus 168 lG--~v~ILsypsLkpv--~si~AH~snCicI~f~p~GryfA~GsA-DA--lvSLWD~~ 219 (313)
T KOG1407|consen 168 LG--CVEILSYPSLKPV--QSIKAHPSNCICIEFDPDGRYFATGSA-DA--LVSLWDVD 219 (313)
T ss_pred Cc--eEEEEeccccccc--cccccCCcceEEEEECCCCceEeeccc-cc--eeeccChh
Confidence 43 4667776621211 113344433322356666676665443 22 24555655
No 220
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=96.68 E-value=0.11 Score=59.34 Aligned_cols=115 Identities=16% Similarity=0.096 Sum_probs=73.4
Q ss_pred CEEEEEEeCc-eEEEEECCCCCccccccCc---cceeEEecCC-eEEE-EEeCC-CCCCeEEEEECCCCCcccEEEEeec
Q 044808 162 KLVAFRENCG-TVCVIDSETGAPAEKPIQG---CLEFEWAGDE-AFLY-TRRNA-IAEPQVWFHKLGEEQSKDTCLYRTR 234 (623)
Q Consensus 162 ~~lA~~~~~~-~l~v~dl~tg~~~~~~i~~---~~~~~WspDg-~l~y-~~~d~-~~~~~v~~~~lgt~~~~d~lv~~~~ 234 (623)
.+|||..+.. +|.+.|..++.....++.. +..+.||||| ++.| +.... .+++.||+++|.+.....+.+=-|.
T Consensus 319 tkiAfv~~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~ 398 (912)
T TIGR02171 319 AKLAFRNDVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVEN 398 (912)
T ss_pred eeEEEEEcCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccc
Confidence 4699998765 8999999887654322332 2358999999 8999 55443 1456999999988654333221121
Q ss_pred --CCceeEEEEEcCCCcEEEEEeecce---------eeEEEEEECCCCC--ceeecCCC
Q 044808 235 --EDLFDLTLEASESKKFLFVKSKTKV---------TGFVYYFDVSRPE--TLWFLPPW 280 (623)
Q Consensus 235 --~~~~~~~~~~S~Dg~~l~i~s~~~~---------~s~l~~~dl~~~~--~~~~l~~~ 280 (623)
-|+| .+.++|..+++.+.+.. ...-|.+..++|+ ++++|...
T Consensus 399 aaiprw----rv~e~gdt~ivyv~~a~nn~d~~~~~~~stw~v~f~~gkfg~p~kl~dg 453 (912)
T TIGR02171 399 AAIPRW----RVLENGDTVIVYVSDASNNKDDATFAAYSTWQVPFANGKFGTPKKLFDG 453 (912)
T ss_pred ccccce----EecCCCCeEEEEEcCCCCCcchhhhhhcceEEEEecCCCCCCchhhhcc
Confidence 1344 45677776655543211 2357888888887 67777654
No 221
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.66 E-value=0.0072 Score=62.68 Aligned_cols=100 Identities=17% Similarity=0.204 Sum_probs=69.2
Q ss_pred CCccEEEEEcCCCCCCCCCCCCchhhhHHHHHC-CcEEEEEeccCCCcCChhHHHcccccCC-CchHhHHHHHHHHHHHc
Q 044808 469 GSDPLLLFGYGSYGLGPSSYSNSIASRLTILDR-GIIFAIAHVRGGDEKGKQWHENGKLLNK-RNTFTDFIACADYLIKS 546 (623)
Q Consensus 469 ~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~-G~~v~~~~~RG~~~~G~~~~~~~~~~~~-~~~~~D~~~~~~~l~~~ 546 (623)
...|-||.+|| ++. ....|. .....|... |+.|...|.=|.| | ..+ ...+ .-...+....++-+..+
T Consensus 56 ~~~~pvlllHG-F~~-~~~~w~--~~~~~L~~~~~~~v~aiDl~G~g-~-~s~-----~~~~~~y~~~~~v~~i~~~~~~ 124 (326)
T KOG1454|consen 56 KDKPPVLLLHG-FGA-SSFSWR--RVVPLLSKAKGLRVLAIDLPGHG-Y-SSP-----LPRGPLYTLRELVELIRRFVKE 124 (326)
T ss_pred CCCCcEEEecc-ccC-CcccHh--hhccccccccceEEEEEecCCCC-c-CCC-----CCCCCceehhHHHHHHHHHHHh
Confidence 34677788998 666 333555 444444444 7999999988833 3 111 1222 24667777777766665
Q ss_pred CCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEE
Q 044808 547 NYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAV 581 (623)
Q Consensus 547 ~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v 581 (623)
-... ++-++|+|+||+++..++..+|+..+..|
T Consensus 125 ~~~~--~~~lvghS~Gg~va~~~Aa~~P~~V~~lv 157 (326)
T KOG1454|consen 125 VFVE--PVSLVGHSLGGIVALKAAAYYPETVDSLV 157 (326)
T ss_pred hcCc--ceEEEEeCcHHHHHHHHHHhCccccccee
Confidence 4443 39999999999999999999999988888
No 222
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=96.59 E-value=0.52 Score=47.85 Aligned_cols=113 Identities=16% Similarity=0.185 Sum_probs=75.4
Q ss_pred EEEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCccc---eeEEecCCeEEEE-EeCCCCCCeEEEEECCCCCc
Q 044808 150 YRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQGCL---EFEWAGDEAFLYT-RRNAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 150 ~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~~~---~~~WspDg~l~y~-~~d~~~~~~v~~~~lgt~~~ 225 (623)
-++....||.||.+||-+-=.+.|.|++..+|...-.....+. -+.|-|-+.+++. ..|. .||.+++...
T Consensus 107 DSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DG----svWmw~ip~~-- 180 (399)
T KOG0296|consen 107 DSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDG----SVWMWQIPSQ-- 180 (399)
T ss_pred CceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCC----cEEEEECCCc--
Confidence 3678899999999999874444899999999976432111222 2778887755544 3332 5999999875
Q ss_pred ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC
Q 044808 226 KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE 272 (623)
Q Consensus 226 ~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~ 272 (623)
....+|......... -.+.|||+.++-... ...|.+.++.+++
T Consensus 181 ~~~kv~~Gh~~~ct~-G~f~pdGKr~~tgy~---dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 181 ALCKVMSGHNSPCTC-GEFIPDGKRILTGYD---DGTIIVWNPKTGQ 223 (399)
T ss_pred ceeeEecCCCCCccc-ccccCCCceEEEEec---CceEEEEecCCCc
Confidence 234566544322222 257899999876443 3467778888876
No 223
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.51 E-value=0.55 Score=46.85 Aligned_cols=118 Identities=16% Similarity=0.039 Sum_probs=69.0
Q ss_pred EEEeeeEECCCCCEEEEEE--eCc-eEEEEECCCCCccccccCccceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcc
Q 044808 150 YRITAFKVSPNNKLVAFRE--NCG-TVCVIDSETGAPAEKPIQGCLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSK 226 (623)
Q Consensus 150 ~~l~~~~~SPDG~~lA~~~--~~~-~l~v~dl~tg~~~~~~i~~~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~ 226 (623)
..+..+.+||||+.+|+.. +.. .|++....+.......-.....+.|+++|.++...... ....+.+ +..++...
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~-~~~~~~~-~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGS-GGVRVVR-DSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCC-CceEEEE-ecCCCcce
Confidence 3467889999999999998 333 89998765443321111122349999998666554322 1113333 22222222
Q ss_pred cEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECC
Q 044808 227 DTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVS 269 (623)
Q Consensus 227 d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~ 269 (623)
...+-......-...+.+||||..+++.........||+.-+.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 2222111111124568899999999998866666788887543
No 224
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=96.50 E-value=0.097 Score=57.80 Aligned_cols=188 Identities=11% Similarity=0.115 Sum_probs=106.9
Q ss_pred EeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc---ccCccceeEEecCCeEEEEEeCCCCCC-eEEEEECCCCCccc
Q 044808 152 ITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK---PIQGCLEFEWAGDEAFLYTRRNAIAEP-QVWFHKLGEEQSKD 227 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~---~i~~~~~~~WspDg~l~y~~~d~~~~~-~v~~~~lgt~~~~d 227 (623)
+-..++|||.++|.-.+...++++|.+.|..-+.. ....++.+.|+|-|..|-+... .+. ++|..+-..+
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~--D~tArLWs~d~~~P---- 527 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASH--DQTARLWSTDHNKP---- 527 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCC--CceeeeeecccCCc----
Confidence 44579999999988776555888888887654321 2223445788898833333322 233 6777664322
Q ss_pred EEEEeecCCceeEE-EEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeE-EEEeeCCEEEEEeCCCCCC
Q 044808 228 TCLYRTREDLFDLT-LEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDM-FVSHRGNQFFIRRSDGGFH 305 (623)
Q Consensus 228 ~lv~~~~~~~~~~~-~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~-~~~~dg~~ly~sn~~g~~~ 305 (623)
..+|...-. .++ +.+.|+..|++-.+ ....+.+.|..+|...+.+..+..-+.. .++|.|..|.-...+
T Consensus 528 lRifaghls--DV~cv~FHPNs~Y~aTGS---sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed---- 598 (707)
T KOG0263|consen 528 LRIFAGHLS--DVDCVSFHPNSNYVATGS---SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED---- 598 (707)
T ss_pred hhhhccccc--ccceEEECCcccccccCC---CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC----
Confidence 234443211 233 56899999976432 2345666777777645555555544443 578877654432222
Q ss_pred eEEEEEeCCCCCceeeEEcCCCCceEeEEEEe--CCEEEEEEeeCCcceEEEEECC
Q 044808 306 SDVLTCPVDNTFETTVLIPHRERVRVEEVRLF--ADHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 306 ~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~--~~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
+.|..+|+.++..-..++.| .+ .+.+++.. +..|++.. +-..+.++|+.
T Consensus 599 ~~I~iWDl~~~~~v~~l~~H-t~-ti~SlsFS~dg~vLasgg---~DnsV~lWD~~ 649 (707)
T KOG0263|consen 599 GLIKIWDLANGSLVKQLKGH-TG-TIYSLSFSRDGNVLASGG---ADNSVRLWDLT 649 (707)
T ss_pred CcEEEEEcCCCcchhhhhcc-cC-ceeEEEEecCCCEEEecC---CCCeEEEEEch
Confidence 45777788776432225555 33 35555544 34444333 22457777775
No 225
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=96.48 E-value=0.019 Score=55.18 Aligned_cols=130 Identities=13% Similarity=0.107 Sum_probs=78.3
Q ss_pred ECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEec---cC-CCcCChhHHH
Q 044808 447 YASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHV---RG-GDEKGKQWHE 522 (623)
Q Consensus 447 ~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~---RG-~~~~G~~~~~ 522 (623)
.-.||.+|.+|-..|++. ...++|+||..-| |+..++ .|- .-..+|+..||.|+..|. .| |.|-=.+|.
T Consensus 8 ~~~~~~~I~vwet~P~~~--~~~~~~tiliA~G-f~rrmd-h~a--gLA~YL~~NGFhViRyDsl~HvGlSsG~I~eft- 80 (294)
T PF02273_consen 8 RLEDGRQIRVWETRPKNN--EPKRNNTILIAPG-FARRMD-HFA--GLAEYLSANGFHVIRYDSLNHVGLSSGDINEFT- 80 (294)
T ss_dssp EETTTEEEEEEEE---TT--S---S-EEEEE-T-T-GGGG-GGH--HHHHHHHTTT--EEEE---B--------------
T ss_pred EcCCCCEEEEeccCCCCC--CcccCCeEEEecc-hhHHHH-HHH--HHHHHHhhCCeEEEeccccccccCCCCChhhcc-
Confidence 446899999999999875 3467788887665 776655 566 677888999999998763 33 111111111
Q ss_pred cccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchhhhhh
Q 044808 523 NGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVLTTIL 594 (623)
Q Consensus 523 ~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~ 594 (623)
-...-+|+..+.+||.+.|. .++|+.-.|--|=.+..+++ .+++ .-.|..+||+|+..|+.
T Consensus 81 ------ms~g~~sL~~V~dwl~~~g~---~~~GLIAaSLSaRIAy~Va~-~i~l-sfLitaVGVVnlr~TLe 141 (294)
T PF02273_consen 81 ------MSIGKASLLTVIDWLATRGI---RRIGLIAASLSARIAYEVAA-DINL-SFLITAVGVVNLRDTLE 141 (294)
T ss_dssp ------HHHHHHHHHHHHHHHHHTT------EEEEEETTHHHHHHHHTT-TS---SEEEEES--S-HHHHHH
T ss_pred ------hHHhHHHHHHHHHHHHhcCC---CcchhhhhhhhHHHHHHHhh-ccCc-ceEEEEeeeeeHHHHHH
Confidence 11345789999999998884 67999999999999999887 4664 66777789999988774
No 226
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=96.48 E-value=0.0085 Score=48.07 Aligned_cols=58 Identities=12% Similarity=0.069 Sum_probs=42.4
Q ss_pred CCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCC
Q 044808 451 GEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKG 517 (623)
Q Consensus 451 G~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G 517 (623)
|++|......|++ .+..+|+.+||- +.... .|. .....|+++||.|+..|.||-|...
T Consensus 1 G~~L~~~~w~p~~-----~~k~~v~i~HG~-~eh~~-ry~--~~a~~L~~~G~~V~~~D~rGhG~S~ 58 (79)
T PF12146_consen 1 GTKLFYRRWKPEN-----PPKAVVVIVHGF-GEHSG-RYA--HLAEFLAEQGYAVFAYDHRGHGRSE 58 (79)
T ss_pred CcEEEEEEecCCC-----CCCEEEEEeCCc-HHHHH-HHH--HHHHHHHhCCCEEEEECCCcCCCCC
Confidence 6677777555543 157899999995 33322 455 6678899999999999999977654
No 227
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.54 Score=50.03 Aligned_cols=197 Identities=15% Similarity=0.098 Sum_probs=112.5
Q ss_pred eeeEECCCCCEEEEEEeC-ceEEEEECCCCCccccccCc-c-ceeEEecCCeEEEEEeCCCCCC-eEEEEECCCCCcccE
Q 044808 153 TAFKVSPNNKLVAFRENC-GTVCVIDSETGAPAEKPIQG-C-LEFEWAGDEAFLYTRRNAIAEP-QVWFHKLGEEQSKDT 228 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~-~~l~v~dl~tg~~~~~~i~~-~-~~~~WspDg~l~y~~~d~~~~~-~v~~~~lgt~~~~d~ 228 (623)
....++++|+++...... ..+.++|.++.+.+.....+ . .++++++|++.+|...... .. .+...+-.+......
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~-~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN-GNNTVSVIDAATNKVTAT 155 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc-CCceEEEEeCCCCeEEEE
Confidence 356899999975444322 38999998776655421112 1 2499999995555543321 23 677777665532111
Q ss_pred EEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceee-----cCCCccc-eeEEEEeeCCEEEEEeCCC
Q 044808 229 CLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWF-----LPPWHLG-IDMFVSHRGNQFFIRRSDG 302 (623)
Q Consensus 229 lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~-----l~~~~~~-~~~~~~~dg~~ly~sn~~g 302 (623)
++....| .++.++|+|+.+++.. ..++.|.++|.++.. ... ..+.... ....++++|..+|+++..
T Consensus 156 -~~vG~~P---~~~a~~p~g~~vyv~~--~~~~~v~vi~~~~~~-v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~- 227 (381)
T COG3391 156 -IPVGNTP---TGVAVDPDGNKVYVTN--SDDNTVSVIDTSGNS-VVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDG- 227 (381)
T ss_pred -EecCCCc---ceEEECCCCCeEEEEe--cCCCeEEEEeCCCcc-eeccccccccccCCCCceEEECCCCCEEEEEecc-
Confidence 3322223 5678899999988754 456789999977654 221 0111111 123578999999995543
Q ss_pred CCCeEEEEEeCCCCCceeeEEcCCCC-ceEeEEEEeCCEEEEEEeeCCcceEEEEECCC
Q 044808 303 GFHSDVLTCPVDNTFETTVLIPHRER-VRVEEVRLFADHIAVYELEEGLPKITTYCLPP 360 (623)
Q Consensus 303 ~~~~~L~~~d~~~~~~~~~li~~~~d-~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~ 360 (623)
.....+.+++........+..+.... .....+.+.+..+++.... ...+.+++...
T Consensus 228 ~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~--~~~V~vid~~~ 284 (381)
T COG3391 228 SGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQ--GGTVSVIDGAT 284 (381)
T ss_pred CCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecC--CCeEEEEeCCC
Confidence 22467888888765433332222221 1112344556666666554 34577777653
No 228
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=96.45 E-value=0.013 Score=62.45 Aligned_cols=83 Identities=18% Similarity=0.092 Sum_probs=58.7
Q ss_pred CCcEEEEEeccCCCc--------CChhHHHcccc-----cCCCchHhHHHHHHHHHHHcCCCCCCcEE-EEEeChHHHHH
Q 044808 501 RGIIFAIAHVRGGDE--------KGKQWHENGKL-----LNKRNTFTDFIACADYLIKSNYCSEDNLC-IEGGSAGGMLI 566 (623)
Q Consensus 501 ~G~~v~~~~~RG~~~--------~G~~~~~~~~~-----~~~~~~~~D~~~~~~~l~~~~~~d~~ri~-i~G~S~GG~l~ 566 (623)
.-|.|+++|+=|++. -|..=-..+.+ ..-..++.|+.+++..|+++--+ +++. +.|+|+||..+
T Consensus 98 ~~yfvi~~n~lG~~~~~~p~~g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~lgi--~~~~~vvG~SmGG~ia 175 (389)
T PRK06765 98 NKYFVISTDTLCNVQVKDPNVITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSLGI--ARLHAVMGPSMGGMQA 175 (389)
T ss_pred CceEEEEecccCCCcCCCCCCCCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHcCC--CCceEEEEECHHHHHH
Confidence 468999999998752 22111111111 12236899999988888875333 5775 99999999999
Q ss_pred HHHHHhCCCeeeEEEecCC
Q 044808 567 GAVLNMRPELFKVAVADVP 585 (623)
Q Consensus 567 ~~~~~~~p~~f~a~v~~~~ 585 (623)
+..+.++|++.+.+|..+.
T Consensus 176 l~~a~~~P~~v~~lv~ia~ 194 (389)
T PRK06765 176 QEWAVHYPHMVERMIGVIG 194 (389)
T ss_pred HHHHHHChHhhheEEEEec
Confidence 9999999999988877753
No 229
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=96.38 E-value=0.063 Score=55.82 Aligned_cols=143 Identities=18% Similarity=0.202 Sum_probs=84.2
Q ss_pred CcEEEeeeEECCCCCEEEEEEeCc-eEEEEECCCCCccccccC-c-----cceeEEecCCeEEEEEeCCCCCC-eEEEEE
Q 044808 148 ENYRITAFKVSPNNKLVAFRENCG-TVCVIDSETGAPAEKPIQ-G-----CLEFEWAGDEAFLYTRRNAIAEP-QVWFHK 219 (623)
Q Consensus 148 ~~~~l~~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~~~i~-~-----~~~~~WspDg~l~y~~~d~~~~~-~v~~~~ 219 (623)
..+.|....|+|+|+..+|+.... -+|++|++++++.+...+ + ...|+-|+|+.|+.... .. .|++..
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G----~~G~I~lLh 331 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAG----NNGHIHLLH 331 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcc----cCceEEeeh
Confidence 345667789999999666666555 899999999987653211 1 12388899996444332 22 566555
Q ss_pred CCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCC--CccceeEEEEeeCCEEEE
Q 044808 220 LGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPP--WHLGIDMFVSHRGNQFFI 297 (623)
Q Consensus 220 lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~--~~~~~~~~~~~dg~~ly~ 297 (623)
..|++ ++-.-.-++...++.||.||+.|++.. .+.+||++|+........... ...+.....+.+|..|..
T Consensus 332 akT~e----li~s~KieG~v~~~~fsSdsk~l~~~~---~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~ 404 (514)
T KOG2055|consen 332 AKTKE----LITSFKIEGVVSDFTFSSDSKELLASG---GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLAT 404 (514)
T ss_pred hhhhh----hhheeeeccEEeeEEEecCCcEEEEEc---CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEe
Confidence 54542 222111123345678899999887632 345999999987641111111 111112234567775555
Q ss_pred -EeCC
Q 044808 298 -RRSD 301 (623)
Q Consensus 298 -sn~~ 301 (623)
|+.+
T Consensus 405 GS~~G 409 (514)
T KOG2055|consen 405 GSDSG 409 (514)
T ss_pred ccCcc
Confidence 5544
No 230
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=96.36 E-value=0.028 Score=57.52 Aligned_cols=115 Identities=17% Similarity=0.159 Sum_probs=73.3
Q ss_pred EEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCch--hhhHHHHHCCcEEEEEeccCCCcCChh-----HHHc----
Q 044808 455 PISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSI--ASRLTILDRGIIFAIAHVRGGDEKGKQ-----WHEN---- 523 (623)
Q Consensus 455 ~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~--~~~~~~~~~G~~v~~~~~RG~~~~G~~-----~~~~---- 523 (623)
...++.|+.. . ....|+.|+..|.-. . +|..+ .....|++.|++-++.. ..-||.. ++..
T Consensus 78 ~~~~~~P~~~-~-~~~rp~~IhLagTGD-h---~f~rR~~l~a~pLl~~gi~s~~le---~Pyyg~RkP~~Q~~s~l~~V 148 (348)
T PF09752_consen 78 RFQLLLPKRW-D-SPYRPVCIHLAGTGD-H---GFWRRRRLMARPLLKEGIASLILE---NPYYGQRKPKDQRRSSLRNV 148 (348)
T ss_pred EEEEEECCcc-c-cCCCceEEEecCCCc-c---chhhhhhhhhhHHHHcCcceEEEe---cccccccChhHhhcccccch
Confidence 3445677764 2 245799998888422 2 23211 22456778898887775 2223321 1110
Q ss_pred -ccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEE
Q 044808 524 -GKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAV 581 (623)
Q Consensus 524 -~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v 581 (623)
.....+...+.+..+.+.||.++|+ .++|+.|-|.||.|+..+++..|.-..++-
T Consensus 149 sDl~~~g~~~i~E~~~Ll~Wl~~~G~---~~~g~~G~SmGG~~A~laa~~~p~pv~~vp 204 (348)
T PF09752_consen 149 SDLFVMGRATILESRALLHWLEREGY---GPLGLTGISMGGHMAALAASNWPRPVALVP 204 (348)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHhcCC---CceEEEEechhHhhHHhhhhcCCCceeEEE
Confidence 0112234577788899999999987 499999999999999999998887544333
No 231
>PLN00181 protein SPA1-RELATED; Provisional
Probab=96.32 E-value=1.3 Score=52.22 Aligned_cols=139 Identities=17% Similarity=0.160 Sum_probs=79.4
Q ss_pred EeeeEECC-CCCEEEEEEeCceEEEEECCCCCccccc---cCccceeEEec-CCeEEEEEeCCCCCCeEEEEECCCCCcc
Q 044808 152 ITAFKVSP-NNKLVAFRENCGTVCVIDSETGAPAEKP---IQGCLEFEWAG-DEAFLYTRRNAIAEPQVWFHKLGEEQSK 226 (623)
Q Consensus 152 l~~~~~SP-DG~~lA~~~~~~~l~v~dl~tg~~~~~~---i~~~~~~~Wsp-Dg~l~y~~~d~~~~~~v~~~~lgt~~~~ 226 (623)
+..+.|+| ++++||-+...++|++||+.+++.+... -..+..++|+| |+.++.+...+. .|.++++.++..
T Consensus 535 v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg---~v~iWd~~~~~~- 610 (793)
T PLN00181 535 LSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDG---SVKLWSINQGVS- 610 (793)
T ss_pred eeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCC---EEEEEECCCCcE-
Confidence 45677876 4778877766669999999998765421 12244699997 566666553221 577888876532
Q ss_pred cEEEEeecCCceeEEEEE-cCCCcEEEEEeecceeeEEEEEECCCCC-ceeecCCCccceeE-EEEeeCCEEEEEeCC
Q 044808 227 DTCLYRTREDLFDLTLEA-SESKKFLFVKSKTKVTGFVYYFDVSRPE-TLWFLPPWHLGIDM-FVSHRGNQFFIRRSD 301 (623)
Q Consensus 227 d~lv~~~~~~~~~~~~~~-S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l~~~~~~~~~-~~~~dg~~ly~sn~~ 301 (623)
...+.... -...+.+ +++|.+|+..+. ...|++.|+.++. ....+......+.. .|. +++.|+....+
T Consensus 611 -~~~~~~~~--~v~~v~~~~~~g~~latgs~---dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D 681 (793)
T PLN00181 611 -IGTIKTKA--NICCVQFPSESGRSLAFGSA---DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTD 681 (793)
T ss_pred -EEEEecCC--CeEEEEEeCCCCCEEEEEeC---CCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECC
Confidence 22222221 2234555 567888765433 3578888987654 22333333333333 243 55554443333
No 232
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.42 Score=51.50 Aligned_cols=205 Identities=13% Similarity=0.104 Sum_probs=111.0
Q ss_pred EeechhhcccCCCCcEEEeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc-cc--CccceeEEecCC-eEEEEEeCCC
Q 044808 135 IIDEEVIKYKNSLENYRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK-PI--QGCLEFEWAGDE-AFLYTRRNAI 210 (623)
Q Consensus 135 llD~n~~a~~~~~~~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~-~i--~~~~~~~WspDg-~l~y~~~d~~ 210 (623)
+||.-.+..+ |.+.-+.|| ....||.+... .+|+|+..+|++... .+ ..+.++.|+++| .|.....+.
T Consensus 168 vLDaP~l~dD-----fY~nlldWs-s~n~laValg~-~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g- 239 (484)
T KOG0305|consen 168 VLDAPGLQDD-----FYLNLLDWS-SANVLAVALGQ-SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDG- 239 (484)
T ss_pred hccCCccccc-----HhhhHhhcc-cCCeEEEEecc-eEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCC-
Confidence 3555445432 345667899 66678888776 799999999997652 33 233469999999 666666443
Q ss_pred CCCeEEEEECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-ceeecCCCcccee-EEE
Q 044808 211 AEPQVWFHKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-TLWFLPPWHLGID-MFV 288 (623)
Q Consensus 211 ~~~~v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l~~~~~~~~-~~~ 288 (623)
.|.++++.+... +--+.+.+......++|. +. + +.+.+ ....|...|+..++ ....+..+...+. ..|
T Consensus 240 ---~v~iwD~~~~k~--~~~~~~~h~~rvg~laW~--~~-~-lssGs-r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw 309 (484)
T KOG0305|consen 240 ---TVQIWDVKEQKK--TRTLRGSHASRVGSLAWN--SS-V-LSSGS-RDGKILNHDVRISQHVVSTLQGHRQEVCGLKW 309 (484)
T ss_pred ---eEEEEehhhccc--cccccCCcCceeEEEecc--Cc-e-EEEec-CCCcEEEEEEecchhhhhhhhcccceeeeeEE
Confidence 477788765432 111222122233345555 21 1 21222 12344444554433 1221222222222 367
Q ss_pred EeeCCEEEE-EeCCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCC
Q 044808 289 SHRGNQFFI-RRSDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGE 363 (623)
Q Consensus 289 ~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~ 363 (623)
++|+..|.- .|. ..+...|........-+..+...+..-.+.+....|+.+.---.-..|.+++..+ |+
T Consensus 310 s~d~~~lASGgnD-----N~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~-g~ 379 (484)
T KOG0305|consen 310 SPDGNQLASGGND-----NVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNT-GA 379 (484)
T ss_pred CCCCCeeccCCCc-----cceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCC-Cc
Confidence 888776654 333 2566666644332222556655554445555566676666444445688888775 54
No 233
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=96.30 E-value=0.51 Score=50.00 Aligned_cols=251 Identities=11% Similarity=-0.018 Sum_probs=123.8
Q ss_pred CcEEEeeeEECCCCCEEEEEEeCceEEEEECCCCCccc---cccC-----ccceeEEecCC-eEEEEEeCCCCCCeEEEE
Q 044808 148 ENYRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAE---KPIQ-----GCLEFEWAGDE-AFLYTRRNAIAEPQVWFH 218 (623)
Q Consensus 148 ~~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~---~~i~-----~~~~~~WspDg-~l~y~~~d~~~~~~v~~~ 218 (623)
++-.++.+++-|.|-+++-+.-..++++||+++....- ..|. .+.++.||+.| .|+...... +..+.
T Consensus 166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~a----qakl~ 241 (641)
T KOG0772|consen 166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSA----QAKLL 241 (641)
T ss_pred CceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCc----ceeEE
Confidence 78899999999999998887654489999998754311 1222 23469999999 766655321 12222
Q ss_pred ECCCCCc-----ccEEEEe---ec-CCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccc------
Q 044808 219 KLGEEQS-----KDTCLYR---TR-EDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLG------ 283 (623)
Q Consensus 219 ~lgt~~~-----~d~lv~~---~~-~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~------ 283 (623)
+...-+. .|.-|.. .. +-.-.....|.|+.+-.|++.+..++-+||-++-...+ .+.+.++..+
T Consensus 242 DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q-~qVik~k~~~g~Rv~~ 320 (641)
T KOG0772|consen 242 DRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQ-LQVIKTKPAGGKRVPV 320 (641)
T ss_pred ccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhh-eeEEeeccCCCcccCc
Confidence 2111000 0111100 00 00001124689999998888776666666655433322 3333222211
Q ss_pred eeEEEEeeCCEEEEEeCCCCCCeEEEEEeCCCCCce-eeEEcCCCCceEeEEEEe--CCEEEEEEeeCCcceEEEEECCC
Q 044808 284 IDMFVSHRGNQFFIRRSDGGFHSDVLTCPVDNTFET-TVLIPHRERVRVEEVRLF--ADHIAVYELEEGLPKITTYCLPP 360 (623)
Q Consensus 284 ~~~~~~~dg~~ly~sn~~g~~~~~L~~~d~~~~~~~-~~li~~~~d~~i~~~~~~--~~~Lv~~~~~~g~~~l~v~~l~~ 360 (623)
....|+++|..|...-.+| ..++|...--..... ..--+|.....|..+... +++|+ +...+ ..|.+|++..
T Consensus 321 tsC~~nrdg~~iAagc~DG--SIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~Ll-SRg~D--~tLKvWDLrq 395 (641)
T KOG0772|consen 321 TSCAWNRDGKLIAAGCLDG--SIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLL-SRGFD--DTLKVWDLRQ 395 (641)
T ss_pred eeeecCCCcchhhhcccCC--ceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhh-hccCC--Cceeeeeccc
Confidence 1246888887654422232 234443211000000 001234444446555544 34443 22222 3477888874
Q ss_pred CCCCcccccCCceeecCCCceEEEeeeccccCCcCCceEEEEeecC---CCCCeEEEEECCC
Q 044808 361 VGEPLKTLQGGRTVDIFKSELCISRIHGIRDSQFSSSILRICFYTM---RMPFSAYDYDMNT 419 (623)
Q Consensus 361 ~g~~~~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ss~---~~P~~~~~~d~~~ 419 (623)
-.+.+. ....+|... .- ....++++. .++++-+|. .+++.++.||..+
T Consensus 396 ~kkpL~-----~~tgL~t~~-~~----tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 396 FKKPLN-----VRTGLPTPF-PG----TDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred cccchh-----hhcCCCccC-CC----CccccCCCc-eEEEecccccCCCCCceEEEEeccc
Confidence 333221 122333211 00 112334544 455655543 3677888888654
No 234
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=96.30 E-value=0.5 Score=47.14 Aligned_cols=115 Identities=13% Similarity=0.189 Sum_probs=68.2
Q ss_pred cEEEeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc-ccC-ccceeEEecCC--eEEEEEeCCCCCCeEEEEECCCCC
Q 044808 149 NYRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK-PIQ-GCLEFEWAGDE--AFLYTRRNAIAEPQVWFHKLGEEQ 224 (623)
Q Consensus 149 ~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~-~i~-~~~~~~WspDg--~l~y~~~d~~~~~~v~~~~lgt~~ 224 (623)
...+..+.||+||++|.-++....|.+||+-.|..+.. .++ .+++..|.|-. +++.+..++. | ++..++.+.
T Consensus 65 ~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~s--p--~vi~~s~~~ 140 (405)
T KOG1273|consen 65 VRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEES--P--VVIDFSDPK 140 (405)
T ss_pred ccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCC--c--EEEEecCCc
Confidence 44788999999999988876655899999999987653 232 34567887766 4555544442 3 334444331
Q ss_pred cccEEEEeecCCceeEEE---EEcCCCcEEEEEeecceeeEEEEEECCCCC
Q 044808 225 SKDTCLYRTREDLFDLTL---EASESKKFLFVKSKTKVTGFVYYFDVSRPE 272 (623)
Q Consensus 225 ~~d~lv~~~~~~~~~~~~---~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~ 272 (623)
..++-..++....... .+.+-|+||+... ++ ..+.+++.++-+
T Consensus 141 --h~~Lp~d~d~dln~sas~~~fdr~g~yIitGt-sK--Gkllv~~a~t~e 186 (405)
T KOG1273|consen 141 --HSVLPKDDDGDLNSSASHGVFDRRGKYIITGT-SK--GKLLVYDAETLE 186 (405)
T ss_pred --eeeccCCCccccccccccccccCCCCEEEEec-Cc--ceEEEEecchhe
Confidence 2223222222222222 3678899987532 22 346666766543
No 235
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=96.25 E-value=0.98 Score=54.52 Aligned_cols=192 Identities=11% Similarity=0.112 Sum_probs=103.1
Q ss_pred eeeEECCCCCEEEEEEeCc-eEEEEECCCCCcccc--c-----------------cCccceeEEecCC-eEEEEEeCCCC
Q 044808 153 TAFKVSPNNKLVAFRENCG-TVCVIDSETGAPAEK--P-----------------IQGCLEFEWAGDE-AFLYTRRNAIA 211 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~~--~-----------------i~~~~~~~WspDg-~l~y~~~d~~~ 211 (623)
..+.++++|..|.++...+ .|+++|+.++.+... . +..-.+++++|++ .+|.+...
T Consensus 627 ~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~--- 703 (1057)
T PLN02919 627 QGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG--- 703 (1057)
T ss_pred cEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC---
Confidence 3567888888765554333 799999887754210 0 0011248899966 55554322
Q ss_pred CCeEEEEECCCCCcccEEEEeec------C------Cc--eeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeec
Q 044808 212 EPQVWFHKLGEEQSKDTCLYRTR------E------DL--FDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFL 277 (623)
Q Consensus 212 ~~~v~~~~lgt~~~~d~lv~~~~------~------~~--~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l 277 (623)
..+|+.++..++. ..++... + .. .-.+++++|||++|++.. ..++.|+++|++++. ...+
T Consensus 704 ~~~I~v~d~~~g~---v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVAD--s~n~~Irv~D~~tg~-~~~~ 777 (1057)
T PLN02919 704 QHQIWEYNISDGV---TRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIAD--SESSSIRALDLKTGG-SRLL 777 (1057)
T ss_pred CCeEEEEECCCCe---EEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEE--CCCCeEEEEECCCCc-EEEE
Confidence 1268888775542 1222110 0 00 123578999999988743 345789999987654 2211
Q ss_pred CC-------------Cccc----------eeEEEEeeCCEEEEEeCCCCCCeEEEEEeCCCCCceeeEEcCCC-------
Q 044808 278 PP-------------WHLG----------IDMFVSHRGNQFFIRRSDGGFHSDVLTCPVDNTFETTVLIPHRE------- 327 (623)
Q Consensus 278 ~~-------------~~~~----------~~~~~~~dg~~ly~sn~~g~~~~~L~~~d~~~~~~~~~li~~~~------- 327 (623)
.. ..++ ....++++|. +|+++.. +.+|.++|.+++.... +.....
T Consensus 778 ~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~---N~rIrviD~~tg~v~t-iaG~G~~G~~dG~ 852 (1057)
T PLN02919 778 AGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSY---NHKIKKLDPATKRVTT-LAGTGKAGFKDGK 852 (1057)
T ss_pred EecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECC---CCEEEEEECCCCeEEE-EeccCCcCCCCCc
Confidence 10 0000 0113556554 7776654 4678888876543221 111100
Q ss_pred -----CceEeEEEEeC-CEEEEEEeeCCcceEEEEECCC
Q 044808 328 -----RVRVEEVRLFA-DHIAVYELEEGLPKITTYCLPP 360 (623)
Q Consensus 328 -----d~~i~~~~~~~-~~Lv~~~~~~g~~~l~v~~l~~ 360 (623)
-....++.+.. +.|++....+ ..|+++++++
T Consensus 853 ~~~a~l~~P~GIavd~dG~lyVaDt~N--n~Irvid~~~ 889 (1057)
T PLN02919 853 ALKAQLSEPAGLALGENGRLFVADTNN--SLIRYLDLNK 889 (1057)
T ss_pred ccccccCCceEEEEeCCCCEEEEECCC--CEEEEEECCC
Confidence 00234566653 4566665444 4688888875
No 236
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=96.20 E-value=0.036 Score=60.72 Aligned_cols=86 Identities=14% Similarity=0.155 Sum_probs=62.1
Q ss_pred hhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHH--cCCCCCCcEEEEEeChHHHHHHH--
Q 044808 493 ASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIK--SNYCSEDNLCIEGGSAGGMLIGA-- 568 (623)
Q Consensus 493 ~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~--~~~~d~~ri~i~G~S~GG~l~~~-- 568 (623)
....+|+++|+-|.+++-|.-+.- .+...++|.+.++.-.++ ...+..++|-+.|+|.||.|++.
T Consensus 238 SlVr~lv~qG~~VflIsW~nP~~~-----------~r~~~ldDYv~~i~~Ald~V~~~tG~~~vnl~GyC~GGtl~a~~~ 306 (560)
T TIGR01839 238 SFVQYCLKNQLQVFIISWRNPDKA-----------HREWGLSTYVDALKEAVDAVRAITGSRDLNLLGACAGGLTCAALV 306 (560)
T ss_pred hHHHHHHHcCCeEEEEeCCCCChh-----------hcCCCHHHHHHHHHHHHHHHHHhcCCCCeeEEEECcchHHHHHHH
Confidence 346789999999999999975432 123445555544443333 23466789999999999999886
Q ss_pred --HHHhCCC-eeeEEEecCCccch
Q 044808 569 --VLNMRPE-LFKVAVADVPSVDV 589 (623)
Q Consensus 569 --~~~~~p~-~f~a~v~~~~~~d~ 589 (623)
.++.+++ ..+.++..+..+|.
T Consensus 307 a~~aA~~~~~~V~sltllatplDf 330 (560)
T TIGR01839 307 GHLQALGQLRKVNSLTYLVSLLDS 330 (560)
T ss_pred HHHHhcCCCCceeeEEeeeccccc
Confidence 5666775 68998888888884
No 237
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=96.19 E-value=0.016 Score=54.69 Aligned_cols=124 Identities=13% Similarity=0.145 Sum_probs=86.8
Q ss_pred cEEEEEcCCCCCCCC--CCCCchhhhHHHHHCCcEEEEEeccCCC-cCChhHHHcccccCCCchHhHHHHHHHHHHHcCC
Q 044808 472 PLLLFGYGSYGLGPS--SYSNSIASRLTILDRGIIFAIAHVRGGD-EKGKQWHENGKLLNKRNTFTDFIACADYLIKSNY 548 (623)
Q Consensus 472 P~il~~~Gg~~~~~~--~~~~~~~~~~~~~~~G~~v~~~~~RG~~-~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~ 548 (623)
-..|..-||-+.... +.-. .-..++.+.+|-.+++..|-+- |||.-= -..+.+|+..++++++..++
T Consensus 36 ~~~vvfiGGLgdgLl~~~y~~--~L~~~lde~~wslVq~q~~Ssy~G~Gt~s--------lk~D~edl~~l~~Hi~~~~f 105 (299)
T KOG4840|consen 36 SVKVVFIGGLGDGLLICLYTT--MLNRYLDENSWSLVQPQLRSSYNGYGTFS--------LKDDVEDLKCLLEHIQLCGF 105 (299)
T ss_pred EEEEEEEcccCCCccccccHH--HHHHHHhhccceeeeeecccccccccccc--------ccccHHHHHHHHHHhhccCc
Confidence 345555576665543 2223 4456778889999999999874 466432 13577999999999998887
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHh--CCCeeeEEEecCCccchhhhhhCCCCcccHHHHhhcc
Q 044808 549 CSEDNLCIEGGSAGGMLIGAVLNM--RPELFKVAVADVPSVDVLTTILFYPRKRDLEIATSVV 609 (623)
Q Consensus 549 ~d~~ri~i~G~S~GG~l~~~~~~~--~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~ 609 (623)
.. .|.++|+|-|.--++.-+++ .|...+|+|+++||.|-...... ...+.+|.++++
T Consensus 106 St--~vVL~GhSTGcQdi~yYlTnt~~~r~iraaIlqApVSDrEYqf~~--~~etk~l~d~l~ 164 (299)
T KOG4840|consen 106 ST--DVVLVGHSTGCQDIMYYLTNTTKDRKIRAAILQAPVSDREYQFLE--EHETKDLSDLLR 164 (299)
T ss_pred cc--ceEEEecCccchHHHHHHHhccchHHHHHHHHhCccchhhhhhcc--ccccHHHHHHHH
Confidence 64 99999999999877776644 35567999999999998733332 233456655443
No 238
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=96.18 E-value=0.023 Score=53.76 Aligned_cols=95 Identities=18% Similarity=0.226 Sum_probs=61.0
Q ss_pred EEEEEcCCCCCCCCCCCCchhhhHHHHHCCcE--EEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCC
Q 044808 473 LLLFGYGSYGLGPSSYSNSIASRLTILDRGII--FAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCS 550 (623)
Q Consensus 473 ~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~--v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 550 (623)
+|+|+|| +.++.. +.......+.+.+.|-. +..+|.. ....+.++.++-++++-.
T Consensus 1 ~ilYlHG-F~Ssp~-S~Ka~~l~~~~~~~~~~~~~~~p~l~-------------------~~p~~a~~~l~~~i~~~~-- 57 (187)
T PF05728_consen 1 MILYLHG-FNSSPQ-SFKAQALKQYFAEHGPDIQYPCPDLP-------------------PFPEEAIAQLEQLIEELK-- 57 (187)
T ss_pred CeEEecC-CCCCCC-CHHHHHHHHHHHHhCCCceEECCCCC-------------------cCHHHHHHHHHHHHHhCC--
Confidence 4899998 665422 22211223455555543 4444433 344666777777777643
Q ss_pred CCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchhhhh
Q 044808 551 EDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVLTTI 593 (623)
Q Consensus 551 ~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~ 593 (623)
++.+++.|.|.|||.+.+++.+++ .+| |...|.++....+
T Consensus 58 ~~~~~liGSSlGG~~A~~La~~~~--~~a-vLiNPav~p~~~l 97 (187)
T PF05728_consen 58 PENVVLIGSSLGGFYATYLAERYG--LPA-VLINPAVRPYELL 97 (187)
T ss_pred CCCeEEEEEChHHHHHHHHHHHhC--CCE-EEEcCCCCHHHHH
Confidence 344999999999999999887663 455 7778888876555
No 239
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=96.17 E-value=0.042 Score=54.47 Aligned_cols=110 Identities=17% Similarity=0.189 Sum_probs=63.7
Q ss_pred eeEECCCCCEEEEEEeCceEEEEECC---CCCccc--c--ccCccc----eeEEecCC-eEEEEEeCCCCCCeEEE----
Q 044808 154 AFKVSPNNKLVAFRENCGTVCVIDSE---TGAPAE--K--PIQGCL----EFEWAGDE-AFLYTRRNAIAEPQVWF---- 217 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~~l~v~dl~---tg~~~~--~--~i~~~~----~~~WspDg-~l~y~~~d~~~~~~v~~---- 217 (623)
..++||||++||.+--+..++||.+- .|+... . .+.+-. .++|||++ +.+-.+.|.++| ||-
T Consensus 233 ~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wr--iwdtdVr 310 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWR--IWDTDVR 310 (420)
T ss_pred ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEE--Eeeccce
Confidence 46999999999988655567777653 333221 1 233322 38889999 776666665443 443
Q ss_pred EECCCCCcccEEEEee-----cCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC
Q 044808 218 HKLGEEQSKDTCLYRT-----REDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE 272 (623)
Q Consensus 218 ~~lgt~~~~d~lv~~~-----~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~ 272 (623)
+..+..+ .++-+. ....-.+.+++||.|+.|++... +.|.++..++++
T Consensus 311 Y~~~qDp---k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g----s~l~~~~se~g~ 363 (420)
T KOG2096|consen 311 YEAGQDP---KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG----SDLKVFASEDGK 363 (420)
T ss_pred EecCCCc---hHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC----CceEEEEcccCc
Confidence 2233221 222111 11112356789999998876433 466777777765
No 240
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=96.16 E-value=0.49 Score=52.81 Aligned_cols=147 Identities=14% Similarity=0.220 Sum_probs=72.3
Q ss_pred eeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcccEEEEeecCCceeEEEEEcC-CCcEEEEEeecceeeEEEEEECCCC
Q 044808 193 EFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSKDTCLYRTREDLFDLTLEASE-SKKFLFVKSKTKVTGFVYYFDVSRP 271 (623)
Q Consensus 193 ~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~-Dg~~l~i~s~~~~~s~l~~~dl~~~ 271 (623)
.+.||.++.|+-...|. .|.+++++.... ..+|...| |..-+++.| |.+|++ +.+ -...|.+.++.+.
T Consensus 374 DlSWSKn~fLLSSSMDK----TVRLWh~~~~~C--L~~F~Hnd--fVTcVaFnPvDDryFi--SGS-LD~KvRiWsI~d~ 442 (712)
T KOG0283|consen 374 DLSWSKNNFLLSSSMDK----TVRLWHPGRKEC--LKVFSHND--FVTCVAFNPVDDRYFI--SGS-LDGKVRLWSISDK 442 (712)
T ss_pred ecccccCCeeEeccccc----cEEeecCCCcce--eeEEecCC--eeEEEEecccCCCcEe--ecc-cccceEEeecCcC
Confidence 37899887666666665 377788887643 55776544 666677777 555533 222 1223444444433
Q ss_pred CceeecCCCcccee-EEEEeeCCEEEE-EeCCCCCCeEEEEEeCCCCCc-eeeEEcCC-----CCceEeEEEEeC---CE
Q 044808 272 ETLWFLPPWHLGID-MFVSHRGNQFFI-RRSDGGFHSDVLTCPVDNTFE-TTVLIPHR-----ERVRVEEVRLFA---DH 340 (623)
Q Consensus 272 ~~~~~l~~~~~~~~-~~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~~-~~~li~~~-----~d~~i~~~~~~~---~~ 340 (623)
+ ...-.+-.+-+. .-+.|+|+..++ |-.+ .-++|.+ .+... ..+-|... ....|.++..+. +.
T Consensus 443 ~-Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G---~C~fY~t--~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~ 516 (712)
T KOG0283|consen 443 K-VVDWNDLRDLITAVCYSPDGKGAVIGTFNG---YCRFYDT--EGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDE 516 (712)
T ss_pred e-eEeehhhhhhheeEEeccCCceEEEEEecc---EEEEEEc--cCCeEEEeeeEeeccCccccCceeeeeEecCCCCCe
Confidence 2 110001111111 124577766666 5443 1222221 11110 11111111 012477887653 45
Q ss_pred EEEEEeeCCcceEEEEECC
Q 044808 341 IAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 341 Lv~~~~~~g~~~l~v~~l~ 359 (623)
++|+..+ ++|++|++.
T Consensus 517 vLVTSnD---SrIRI~d~~ 532 (712)
T KOG0283|consen 517 VLVTSND---SRIRIYDGR 532 (712)
T ss_pred EEEecCC---CceEEEecc
Confidence 6666654 579999875
No 241
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=96.13 E-value=1.8 Score=43.83 Aligned_cols=114 Identities=18% Similarity=0.162 Sum_probs=72.7
Q ss_pred eeEECC-CCCEEEEEEeCc-eEEEEECCCCCccccc--cCc--cce-eEEecCCeEEEEEeCCCCC-C-eEEEEECCCCC
Q 044808 154 AFKVSP-NNKLVAFRENCG-TVCVIDSETGAPAEKP--IQG--CLE-FEWAGDEAFLYTRRNAIAE-P-QVWFHKLGEEQ 224 (623)
Q Consensus 154 ~~~~SP-DG~~lA~~~~~~-~l~v~dl~tg~~~~~~--i~~--~~~-~~WspDg~l~y~~~d~~~~-~-~v~~~~lgt~~ 224 (623)
.+.++| ++..+||+...+ -+.++|..+|+..... -++ ..+ -+||+||+++|++..+... . .|-+++...+-
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~ 88 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGY 88 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCc
Confidence 468899 777889998888 8999999999976521 112 235 8999999877877643322 2 56666665221
Q ss_pred cccEEEEeecCCcee---EEEEEcCCCcEEEEEeec---c------------eeeEEEEEECCCCC
Q 044808 225 SKDTCLYRTREDLFD---LTLEASESKKFLFVKSKT---K------------VTGFVYYFDVSRPE 272 (623)
Q Consensus 225 ~~d~lv~~~~~~~~~---~~~~~S~Dg~~l~i~s~~---~------------~~s~l~~~dl~~~~ 272 (623)
..+ .|- +.+- ..+.+.|||+.|++.... + ....|-++|..+|+
T Consensus 89 ---~ri-~E~-~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ 149 (305)
T PF07433_consen 89 ---RRI-GEF-PSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGA 149 (305)
T ss_pred ---EEE-eEe-cCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCc
Confidence 222 221 1111 135689999998875411 1 12467888888876
No 242
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=96.11 E-value=0.68 Score=45.95 Aligned_cols=188 Identities=15% Similarity=0.133 Sum_probs=89.9
Q ss_pred EEeeeEECC-CCCEEEEEEeCceEEEEECCC-CCccccc---cCc-cceeEEecCC-eEEEEEeCCCCCCeEEEEECCCC
Q 044808 151 RITAFKVSP-NNKLVAFRENCGTVCVIDSET-GAPAEKP---IQG-CLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEE 223 (623)
Q Consensus 151 ~l~~~~~SP-DG~~lA~~~~~~~l~v~dl~t-g~~~~~~---i~~-~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~ 223 (623)
+|+.++||| ...+++-++=.+++++|+++. |...+.. +++ +-.++|+.|| ++|....|. ++..++|.++
T Consensus 29 sIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk----~~k~wDL~S~ 104 (347)
T KOG0647|consen 29 SISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDK----QAKLWDLASG 104 (347)
T ss_pred chheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCC----ceEEEEccCC
Confidence 588899999 444443443333899999976 5554422 222 1248999999 555444443 4777899888
Q ss_pred CcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCc-eeecCCCccceeEEEEeeCCEEEEEeCCC
Q 044808 224 QSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPET-LWFLPPWHLGIDMFVSHRGNQFFIRRSDG 302 (623)
Q Consensus 224 ~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~-~~~l~~~~~~~~~~~~~dg~~ly~sn~~g 302 (623)
+. ..|-....+- -.+.|-+...+-.+... +....|-+.|...... ...-+|.. .|..+--...+.+...+
T Consensus 105 Q~--~~v~~Hd~pv--kt~~wv~~~~~~cl~TG-SWDKTlKfWD~R~~~pv~t~~LPeR---vYa~Dv~~pm~vVata~- 175 (347)
T KOG0647|consen 105 QV--SQVAAHDAPV--KTCHWVPGMNYQCLVTG-SWDKTLKFWDTRSSNPVATLQLPER---VYAADVLYPMAVVATAE- 175 (347)
T ss_pred Ce--eeeeecccce--eEEEEecCCCcceeEec-ccccceeecccCCCCeeeeeeccce---eeehhccCceeEEEecC-
Confidence 63 3332222221 12233333332222221 1234566666665441 11112221 34433333344443322
Q ss_pred CCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCC-EEEEEEeeCCcceEE
Q 044808 303 GFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFAD-HIAVYELEEGLPKIT 354 (623)
Q Consensus 303 ~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~-~Lv~~~~~~g~~~l~ 354 (623)
..|..++|+++..+.-.+...-...+..+..+.+ ..+....-+|.-.|.
T Consensus 176 ---r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq 225 (347)
T KOG0647|consen 176 ---RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQ 225 (347)
T ss_pred ---CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEE
Confidence 2477778866532111222222333455665542 233444444543333
No 243
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=96.05 E-value=0.26 Score=54.40 Aligned_cols=186 Identities=18% Similarity=0.257 Sum_probs=109.5
Q ss_pred eeEECCCCCEEEEEEeCceEEEEECCCCCccccccC---c-cceeEEecCC-eEEEEEeCCCCCCeEEEEEC-----CCC
Q 044808 154 AFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQ---G-CLEFEWAGDE-AFLYTRRNAIAEPQVWFHKL-----GEE 223 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~---~-~~~~~WspDg-~l~y~~~d~~~~~~v~~~~l-----gt~ 223 (623)
...+-|.+++|..+.+.+.|.|+|+++...+. +++ + +++++-+||+ +++-...|.+- +.|-..+ |+.
T Consensus 417 ~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~E-ti~AHdgaIWsi~~~pD~~g~vT~saDktV--kfWdf~l~~~~~gt~ 493 (888)
T KOG0306|consen 417 ASKFVPGDRYIVLGTKNGELQVFDLASASLVE-TIRAHDGAIWSISLSPDNKGFVTGSADKTV--KFWDFKLVVSVPGTQ 493 (888)
T ss_pred EEEecCCCceEEEeccCCceEEEEeehhhhhh-hhhccccceeeeeecCCCCceEEecCCcEE--EEEeEEEEeccCccc
Confidence 45788999999999888899999999988775 343 2 2346678999 66655544321 2222111 221
Q ss_pred CcccEE------EEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCcee-ecCCCcccee-EEEEeeCCEE
Q 044808 224 QSKDTC------LYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLW-FLPPWHLGID-MFVSHRGNQF 295 (623)
Q Consensus 224 ~~~d~l------v~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~-~l~~~~~~~~-~~~~~dg~~l 295 (623)
. ..+ +.+-++ -.+.+++||||++|++.-.+ .+-.||.+|.= + +. .+..+.-.+. ..++||++.+
T Consensus 494 -~-k~lsl~~~rtLel~d--dvL~v~~Spdgk~LaVsLLd-nTVkVyflDtl--K-FflsLYGHkLPV~smDIS~DSkli 565 (888)
T KOG0306|consen 494 -K-KVLSLKHTRTLELED--DVLCVSVSPDGKLLAVSLLD-NTVKVYFLDTL--K-FFLSLYGHKLPVLSMDISPDSKLI 565 (888)
T ss_pred -c-eeeeeccceEEeccc--cEEEEEEcCCCcEEEEEecc-CeEEEEEecce--e-eeeeecccccceeEEeccCCcCeE
Confidence 1 111 111112 24567899999999886543 35677777632 1 21 2333332222 3678876643
Q ss_pred EEEeCCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEe-CCEEEEEEeeCCcceEEEEEC
Q 044808 296 FIRRSDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLF-ADHIAVYELEEGLPKITTYCL 358 (623)
Q Consensus 296 y~sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~-~~~Lv~~~~~~g~~~l~v~~l 358 (623)
.-...+ .|.++|-+|....- +-+++|+.. +..+..- ..+++++...++. +..||-
T Consensus 566 vTgSAD--KnVKiWGLdFGDCH--KS~fAHdDS--vm~V~F~P~~~~FFt~gKD~k--vKqWDg 621 (888)
T KOG0306|consen 566 VTGSAD--KNVKIWGLDFGDCH--KSFFAHDDS--VMSVQFLPKTHLFFTCGKDGK--VKQWDG 621 (888)
T ss_pred EeccCC--CceEEeccccchhh--hhhhcccCc--eeEEEEcccceeEEEecCcce--EEeech
Confidence 333333 36889888875442 227777654 3344433 5789998888874 555653
No 244
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.05 E-value=0.74 Score=45.56 Aligned_cols=144 Identities=15% Similarity=0.214 Sum_probs=78.8
Q ss_pred CcEEEeeeEECCCCCEEEEEEeCc---------eEEEEECCCCCccc--cccCccceeEEecCCeEEEEEeCCCCCCeEE
Q 044808 148 ENYRITAFKVSPNNKLVAFRENCG---------TVCVIDSETGAPAE--KPIQGCLEFEWAGDEAFLYTRRNAIAEPQVW 216 (623)
Q Consensus 148 ~~~~l~~~~~SPDG~~lA~~~~~~---------~l~v~dl~tg~~~~--~~i~~~~~~~WspDg~l~y~~~d~~~~~~v~ 216 (623)
.........++|||+ |.++.... .|+.++.. ++... ..+....+++|+||++.+|...-. ..+||
T Consensus 84 ~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~--~~~i~ 159 (246)
T PF08450_consen 84 PFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSF--NGRIW 159 (246)
T ss_dssp CTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETT--TTEEE
T ss_pred ccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccc--cceeE
Confidence 456778899999999 55554322 48999988 55322 123333469999999544443211 12788
Q ss_pred EEECCCCC--cccEEEE-eecCC-ceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeec-CCCccceeEEE-Ee
Q 044808 217 FHKLGEEQ--SKDTCLY-RTRED-LFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFL-PPWHLGIDMFV-SH 290 (623)
Q Consensus 217 ~~~lgt~~--~~d~lv~-~~~~~-~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l-~~~~~~~~~~~-~~ 290 (623)
+.++.... .....++ +.... .+.-++.+..+|+ |++... ....|++++.+ ++....+ .+...-....| .+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~-l~va~~--~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~ 235 (246)
T PF08450_consen 160 RFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGN-LWVADW--GGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGP 235 (246)
T ss_dssp EEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS--EEEEEE--TTTEEEEEETT-SCEEEEEE-SSSSEEEEEEEST
T ss_pred EEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCC-EEEEEc--CCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECC
Confidence 88885332 1122233 32222 2445678889996 444322 34689999988 4412212 33221122345 35
Q ss_pred eCCEEEE-Ee
Q 044808 291 RGNQFFI-RR 299 (623)
Q Consensus 291 dg~~ly~-sn 299 (623)
+.++||+ |.
T Consensus 236 ~~~~L~vTta 245 (246)
T PF08450_consen 236 DGKTLYVTTA 245 (246)
T ss_dssp TSSEEEEEEB
T ss_pred CCCEEEEEeC
Confidence 6788998 53
No 245
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=96.04 E-value=0.007 Score=63.52 Aligned_cols=114 Identities=17% Similarity=0.126 Sum_probs=75.8
Q ss_pred EEEEEcCCCCCCCCCCCCchhhhHHHHHC-CcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcC---C
Q 044808 473 LLLFGYGSYGLGPSSYSNSIASRLTILDR-GIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSN---Y 548 (623)
Q Consensus 473 ~il~~~Gg~~~~~~~~~~~~~~~~~~~~~-G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~---~ 548 (623)
++|++|||--.+-.++.+- ..-..|+.. -.+|+..|||=|. ||=-+.-...-..|---+-|..=|++|+.++- -
T Consensus 137 VlVWiyGGGF~sGt~SLdv-YdGk~la~~envIvVs~NYRvG~-FGFL~l~~~~eaPGNmGl~DQqLAl~WV~~Ni~aFG 214 (601)
T KOG4389|consen 137 VLVWIYGGGFYSGTPSLDV-YDGKFLAAVENVIVVSMNYRVGA-FGFLYLPGHPEAPGNMGLLDQQLALQWVQENIAAFG 214 (601)
T ss_pred EEEEEEcCccccCCcceee-eccceeeeeccEEEEEeeeeecc-ceEEecCCCCCCCCccchHHHHHHHHHHHHhHHHhC
Confidence 8999999832233333320 112244454 6888999999754 44322211122344456789999999999862 2
Q ss_pred CCCCcEEEEEeChHHHHHHHHHHhCC---CeeeEEEecCCccch
Q 044808 549 CSEDNLCIEGGSAGGMLIGAVLNMRP---ELFKVAVADVPSVDV 589 (623)
Q Consensus 549 ~d~~ri~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~~~~d~ 589 (623)
-||+||.++|.|||.-.+.+=+. .| .+|+.+|.+.|-.+-
T Consensus 215 Gnp~~vTLFGESAGaASv~aHLl-sP~S~glF~raIlQSGS~~~ 257 (601)
T KOG4389|consen 215 GNPSRVTLFGESAGAASVVAHLL-SPGSRGLFHRAILQSGSLNN 257 (601)
T ss_pred CCcceEEEeccccchhhhhheec-CCCchhhHHHHHhhcCCCCC
Confidence 59999999999999887765443 24 389999999997663
No 246
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=96.03 E-value=0.019 Score=60.64 Aligned_cols=55 Identities=24% Similarity=0.364 Sum_probs=43.0
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCcc----ceeEEecCCeEEEEE
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQGC----LEFEWAGDEAFLYTR 206 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~~----~~~~WspDg~l~y~~ 206 (623)
.+..+.+||||++||.+..++.|+|+|..+.+.+. ....- -.++|||||+++.+-
T Consensus 292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg-~mkSYFGGLLCvcWSPDGKyIvtG 350 (636)
T KOG2394|consen 292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLG-VMKSYFGGLLCVCWSPDGKYIVTG 350 (636)
T ss_pred cccceeEcCCCceEEEEecCceEEEeeccHHHHHH-HHHhhccceEEEEEcCCccEEEec
Confidence 67789999999999999988899999998877653 22211 138999999776664
No 247
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=96.02 E-value=0.17 Score=50.29 Aligned_cols=163 Identities=13% Similarity=0.135 Sum_probs=86.8
Q ss_pred eechhhcccCCCCcEEEeeeEECCCCCEEEEEEeCceEEEEECCCCCccc-----cccC--ccceeEEecCC-eEEEEEe
Q 044808 136 IDEEVIKYKNSLENYRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAE-----KPIQ--GCLEFEWAGDE-AFLYTRR 207 (623)
Q Consensus 136 lD~n~~a~~~~~~~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~-----~~i~--~~~~~~WspDg-~l~y~~~ 207 (623)
||.|.|. +| + -.++.+.||.|||+||-..+.+.|+||++..-+... ..++ ...-++|+||- .+++...
T Consensus 77 l~~~~LK-gH--~-~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~ 152 (420)
T KOG2096|consen 77 LNVSVLK-GH--K-KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK 152 (420)
T ss_pred hhhhhhh-cc--C-CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc
Confidence 6777775 43 2 357889999999999999888899999987532111 1111 11238899998 6666553
Q ss_pred CCCCCCeEEEEECCCC-----C----cccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecC
Q 044808 208 NAIAEPQVWFHKLGEE-----Q----SKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLP 278 (623)
Q Consensus 208 d~~~~~~v~~~~lgt~-----~----~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~ 278 (623)
.. ..++.+.+... . ..|-+-|++...--.+++.....+++|. +. ...+.|.+.++.+.. +..+-
T Consensus 153 ~g---~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~im--sa-s~dt~i~lw~lkGq~-L~~id 225 (420)
T KOG2096|consen 153 RG---NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIM--SA-SLDTKICLWDLKGQL-LQSID 225 (420)
T ss_pred cC---CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEE--Ee-cCCCcEEEEecCCce-eeeec
Confidence 21 14555544221 1 0122223332221223445555565543 22 234678888887422 22221
Q ss_pred C-CccceeEEEEeeCCEEEEEeCCCCCCeEEEEE
Q 044808 279 P-WHLGIDMFVSHRGNQFFIRRSDGGFHSDVLTC 311 (623)
Q Consensus 279 ~-~~~~~~~~~~~dg~~ly~sn~~g~~~~~L~~~ 311 (623)
. ...+....++|+|..+..+.-. +..+++..
T Consensus 226 tnq~~n~~aavSP~GRFia~~gFT--pDVkVwE~ 257 (420)
T KOG2096|consen 226 TNQSSNYDAAVSPDGRFIAVSGFT--PDVKVWEP 257 (420)
T ss_pred cccccccceeeCCCCcEEEEecCC--CCceEEEE
Confidence 1 1122234688987654444332 34455543
No 248
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=96.01 E-value=2.6 Score=46.70 Aligned_cols=159 Identities=11% Similarity=0.030 Sum_probs=93.0
Q ss_pred CC-eEEEEEeCCCCCC-eEEEEECCCCCcccEEEEeec---CC-cee-E-EEEEcCCCcEEEEEeecce--eeEEEEEEC
Q 044808 199 DE-AFLYTRRNAIAEP-QVWFHKLGEEQSKDTCLYRTR---ED-LFD-L-TLEASESKKFLFVKSKTKV--TGFVYYFDV 268 (623)
Q Consensus 199 Dg-~l~y~~~d~~~~~-~v~~~~lgt~~~~d~lv~~~~---~~-~~~-~-~~~~S~Dg~~l~i~s~~~~--~s~l~~~dl 268 (623)
++ ..||++..+ +.. -++...+..+.+...+|+... .+ .|+ + .++.|||++++++.....+ .-.+.+.|+
T Consensus 84 ~~~~~Yy~r~~~-g~~y~~~~R~~~~g~~~eevlLD~n~~A~g~~f~~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL 162 (682)
T COG1770 84 KGPYEYYSRTEE-GKEYPIYCRQPDEGGEGEEVLLDVNKEAEGHDFFSLGAASISPDHNLLAYSVDVLGDEQYTLRFKDL 162 (682)
T ss_pred cCCeeEEEEecC-CCcceeEEeccCCCCCceeEeecchhccCcccceeeeeeeeCCCCceEEEEEecccccEEEEEEEec
Confidence 45 677777654 333 455553333322124454421 12 243 3 4679999999998765443 346778889
Q ss_pred CCCC-ceeecCCCccceeEEEEeeCCEEEE-EeCCCCCCeEEEEEeCCCCCc-eeeEEcCCCCceEeEEEE--eCCEEEE
Q 044808 269 SRPE-TLWFLPPWHLGIDMFVSHRGNQFFI-RRSDGGFHSDVLTCPVDNTFE-TTVLIPHRERVRVEEVRL--FADHIAV 343 (623)
Q Consensus 269 ~~~~-~~~~l~~~~~~~~~~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~~-~~~li~~~~d~~i~~~~~--~~~~Lv~ 343 (623)
.+++ -+..+. .. .....|..|+..||+ +.++..--.+|++-.+.++.. .+.+..+..+...-++.- .+++|++
T Consensus 163 ~tg~~~~d~i~-~~-~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i 240 (682)
T COG1770 163 ATGEELPDEIT-NT-SGSFAWAADGKTLFYTRLDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVI 240 (682)
T ss_pred ccccccchhhc-cc-ccceEEecCCCeEEEEEEcCCCCcceEEEEecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEE
Confidence 8886 111111 11 112357888988888 665533446888888876433 333555544433323332 3468888
Q ss_pred EEeeCCcceEEEEECCC
Q 044808 344 YELEEGLPKITTYCLPP 360 (623)
Q Consensus 344 ~~~~~g~~~l~v~~l~~ 360 (623)
.......+++++++.+.
T Consensus 241 ~~~~~~tsE~~ll~a~~ 257 (682)
T COG1770 241 SLGSHITSEVRLLDADD 257 (682)
T ss_pred EcCCCcceeEEEEecCC
Confidence 88777788999998874
No 249
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=96.01 E-value=1.8 Score=42.83 Aligned_cols=255 Identities=12% Similarity=0.048 Sum_probs=119.6
Q ss_pred ccCccceeEEecCCe-EEEEEeCCCCCCeEEEEECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEE
Q 044808 187 PIQGCLEFEWAGDEA-FLYTRRNAIAEPQVWFHKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYY 265 (623)
Q Consensus 187 ~i~~~~~~~WspDg~-l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~ 265 (623)
.+-.+..+.|++|++ ++-.+.|. ++..++.-|..... .+. -...|.+.+++||.|++++-.-.+ +...||-
T Consensus 54 H~~Ki~~~~ws~Dsr~ivSaSqDG----klIvWDs~TtnK~h--aip-l~s~WVMtCA~sPSg~~VAcGGLd-N~Csiy~ 125 (343)
T KOG0286|consen 54 HLNKIYAMDWSTDSRRIVSASQDG----KLIVWDSFTTNKVH--AIP-LPSSWVMTCAYSPSGNFVACGGLD-NKCSIYP 125 (343)
T ss_pred cccceeeeEecCCcCeEEeeccCC----eEEEEEccccccee--EEe-cCceeEEEEEECCCCCeEEecCcC-ceeEEEe
Confidence 344445699999995 54444443 57788877764322 222 224578889999999987643211 2234554
Q ss_pred EECCCCC---ceeecCCCccce-e-EEEEeeCCEEEEEeCCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCE
Q 044808 266 FDVSRPE---TLWFLPPWHLGI-D-MFVSHRGNQFFIRRSDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADH 340 (623)
Q Consensus 266 ~dl~~~~---~~~~l~~~~~~~-~-~~~~~dg~~ly~sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~ 340 (623)
+...+.+ ......+...+. . ..+-. +.+|+-+.. .......|++++....-.-.|..|+.-.++.+....
T Consensus 126 ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SG----D~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 126 LSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSG----DMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred cccccccccceeeeeecCccceeEEEEEcC-CCceEecCC----CceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 4433112 121112222221 1 12323 334433222 245667788776533224444445332233333456
Q ss_pred EEEEEeeCCcceEEEEECCCCCCCcccccCCceeecCCCceEEEeeeccccCCcCCceEEEEeecCCCCCeEEEEECCCC
Q 044808 341 IAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCISRIHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTG 420 (623)
Q Consensus 341 Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~ 420 (623)
.+++..-+....|+ |+.. |. ....|+.....| ....+-+++.. |...|-. .+.-.||+...
T Consensus 201 tFvSg~cD~~aklW--D~R~-~~--------c~qtF~ghesDI----Nsv~ffP~G~a--fatGSDD--~tcRlyDlRaD 261 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLW--DVRS-GQ--------CVQTFEGHESDI----NSVRFFPSGDA--FATGSDD--ATCRLYDLRAD 261 (343)
T ss_pred eEEecccccceeee--eccC-cc--------eeEeeccccccc----ceEEEccCCCe--eeecCCC--ceeEEEeecCC
Confidence 77777777665554 6553 32 123454433333 12223344332 2223333 34555666554
Q ss_pred cE-EEEEEeeecCCCCCCCc-eEeeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCC
Q 044808 421 IS-VLKKKETILGGFDESNY-VTESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGS 480 (623)
Q Consensus 421 ~~-~~~~~~~~~~~~~~~~~-~~~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg 480 (623)
.. .+.....+.-++..-.+ ..-++-+...+...+.+|=. ..+..-.+|.+|+.
T Consensus 262 ~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt-------lk~e~vg~L~GHeN 316 (343)
T KOG0286|consen 262 QELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT-------LKGERVGVLAGHEN 316 (343)
T ss_pred cEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeec-------cccceEEEeeccCC
Confidence 42 22221111112221112 12334444444445665511 23556788888886
No 250
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=96.00 E-value=0.019 Score=58.92 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=71.6
Q ss_pred CCccEEEEEcCCCCCCCCCC-C--CchhhhHHHHHCC-------cEEEEEeccCCC-c-CChhHHHcc---cc-cCCCch
Q 044808 469 GSDPLLLFGYGSYGLGPSSY-S--NSIASRLTILDRG-------IIFAIAHVRGGD-E-KGKQWHENG---KL-LNKRNT 532 (623)
Q Consensus 469 ~~~P~il~~~Gg~~~~~~~~-~--~~~~~~~~~~~~G-------~~v~~~~~RG~~-~-~G~~~~~~~---~~-~~~~~~ 532 (623)
.+..+||..||=-+.+.... + ..-..+..++.-| |.|++.|+=||. | .|..=.... .+ ....-+
T Consensus 49 ~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~r~fvIc~NvlG~c~GStgP~s~~p~g~~yg~~FP~~t 128 (368)
T COG2021 49 EKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTERFFVICTNVLGGCKGSTGPSSINPGGKPYGSDFPVIT 128 (368)
T ss_pred cCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCccceEEEEecCCCCCCCCCCCCCcCCCCCccccCCCccc
Confidence 34678898998544332111 1 1002345555555 899999999876 1 222111111 01 122358
Q ss_pred HhHHHHHHHHHHHc-CCCCCCcEE-EEEeChHHHHHHHHHHhCCCeeeEEEecCC
Q 044808 533 FTDFIACADYLIKS-NYCSEDNLC-IEGGSAGGMLIGAVLNMRPELFKVAVADVP 585 (623)
Q Consensus 533 ~~D~~~~~~~l~~~-~~~d~~ri~-i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~ 585 (623)
+.|.+.+-+.|++. |+ +||. +.|+|+||..++.-+..+||..+.+|..+.
T Consensus 129 i~D~V~aq~~ll~~LGI---~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~ia~ 180 (368)
T COG2021 129 IRDMVRAQRLLLDALGI---KKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPIAT 180 (368)
T ss_pred HHHHHHHHHHHHHhcCc---ceEeeeeccChHHHHHHHHHHhChHHHhhhheecc
Confidence 88999999888775 54 3565 899999999999888889997666655543
No 251
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=95.98 E-value=0.19 Score=50.90 Aligned_cols=115 Identities=12% Similarity=0.160 Sum_probs=71.7
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc--ccCc-cceeEEecCCe---EEEEEeCCC--------CCC-eE
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK--PIQG-CLEFEWAGDEA---FLYTRRNAI--------AEP-QV 215 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~--~i~~-~~~~~WspDg~---l~y~~~d~~--------~~~-~v 215 (623)
.+..++++-||..+|-.....+|++|-+++++-... ..+. +.-++|.|... +.......+ .+. .+
T Consensus 237 wvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktI 316 (406)
T KOG0295|consen 237 WVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTI 316 (406)
T ss_pred hEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceE
Confidence 345689999999999887777999999999843221 1222 22377777651 221111100 133 57
Q ss_pred EEEECCCCCcccEEEEee-cCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC
Q 044808 216 WFHKLGEEQSKDTCLYRT-REDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE 272 (623)
Q Consensus 216 ~~~~lgt~~~~d~lv~~~-~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~ 272 (623)
..+++.++ .++++- ....+..+++++|.|+||+-.+. +..|.+.|+.+.+
T Consensus 317 k~wdv~tg----~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD---Dktlrvwdl~~~~ 367 (406)
T KOG0295|consen 317 KIWDVSTG----MCLFTLVGHDNWVRGVAFSPGGKYILSCAD---DKTLRVWDLKNLQ 367 (406)
T ss_pred EEEeccCC----eEEEEEecccceeeeeEEcCCCeEEEEEec---CCcEEEEEeccce
Confidence 77888887 345542 33457778999999999874332 3456666777654
No 252
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=95.94 E-value=0.088 Score=49.78 Aligned_cols=112 Identities=16% Similarity=0.194 Sum_probs=79.0
Q ss_pred CCccEEEEEcCCCCCCCCCCCCchhh-hHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcC
Q 044808 469 GSDPLLLFGYGSYGLGPSSYSNSIAS-RLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSN 547 (623)
Q Consensus 469 ~~~P~il~~~Gg~~~~~~~~~~~~~~-~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 547 (623)
+..-++|..|| +.+.-..-+. -. ...|...|+-++..|+||-|+.-..|+-. ++....+|+-.+++++-..
T Consensus 31 gs~e~vvlcHG-frS~Kn~~~~--~~vA~~~e~~gis~fRfDF~GnGeS~gsf~~G----n~~~eadDL~sV~q~~s~~- 102 (269)
T KOG4667|consen 31 GSTEIVVLCHG-FRSHKNAIIM--KNVAKALEKEGISAFRFDFSGNGESEGSFYYG----NYNTEADDLHSVIQYFSNS- 102 (269)
T ss_pred CCceEEEEeec-cccccchHHH--HHHHHHHHhcCceEEEEEecCCCCcCCccccC----cccchHHHHHHHHHHhccC-
Confidence 55678888998 4444332232 22 34555679999999999999876666542 2334559999999999773
Q ss_pred CCCCCcE--EEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchhhhh
Q 044808 548 YCSEDNL--CIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVLTTI 593 (623)
Q Consensus 548 ~~d~~ri--~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~ 593 (623)
+|+ .|.|+|-||..+..-+...++ .+-+|.-.|=.|.....
T Consensus 103 ----nr~v~vi~gHSkGg~Vvl~ya~K~~d-~~~viNcsGRydl~~~I 145 (269)
T KOG4667|consen 103 ----NRVVPVILGHSKGGDVVLLYASKYHD-IRNVINCSGRYDLKNGI 145 (269)
T ss_pred ----ceEEEEEEeecCccHHHHHHHHhhcC-chheEEcccccchhcch
Confidence 343 789999999999888878777 35667777777765544
No 253
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=95.92 E-value=1.6 Score=41.45 Aligned_cols=90 Identities=9% Similarity=0.141 Sum_probs=50.2
Q ss_pred EEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeE-EEEeeCCEEEE-EeCCCCCCeEEEEEeCCCCC
Q 044808 240 LTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDM-FVSHRGNQFFI-RRSDGGFHSDVLTCPVDNTF 317 (623)
Q Consensus 240 ~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~-~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~ 317 (623)
..+.+.|.|+.|+- .+..+...+.|+.++...+...|....+.. .|+|. ..|+ |..- ..+|-..|+...-
T Consensus 235 aav~vdpsgrll~s---g~~dssc~lydirg~r~iq~f~phsadir~vrfsp~--a~yllt~sy---d~~ikltdlqgdl 306 (350)
T KOG0641|consen 235 AAVAVDPSGRLLAS---GHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPG--AHYLLTCSY---DMKIKLTDLQGDL 306 (350)
T ss_pred EEEEECCCcceeee---ccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCC--ceEEEEecc---cceEEEeecccch
Confidence 35678899987652 333455666677766534556677666554 47763 2344 4332 1467777775421
Q ss_pred ---ceeeEEcCCCCceEeEEEEeC
Q 044808 318 ---ETTVLIPHRERVRVEEVRLFA 338 (623)
Q Consensus 318 ---~~~~li~~~~d~~i~~~~~~~ 338 (623)
....++.++.|..| ...|..
T Consensus 307 a~el~~~vv~ehkdk~i-~~rwh~ 329 (350)
T KOG0641|consen 307 AHELPIMVVAEHKDKAI-QCRWHP 329 (350)
T ss_pred hhcCceEEEEeccCceE-EEEecC
Confidence 11126666666544 344543
No 254
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=95.92 E-value=1.4 Score=44.82 Aligned_cols=151 Identities=17% Similarity=0.156 Sum_probs=93.2
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCc----cceeEEecCCeEEEEEeCCCCCC-eEEEEECCCCCc
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQG----CLEFEWAGDEAFLYTRRNAIAEP-QVWFHKLGEEQS 225 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~----~~~~~WspDg~l~y~~~d~~~~~-~v~~~~lgt~~~ 225 (623)
++-.++++|+.+++|-+--...-++|++.+|+..- .+++ +....||.||.++-+.. .. +|..++..++..
T Consensus 66 svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~-eltgHKDSVt~~~FshdgtlLATGd----msG~v~v~~~stg~~ 140 (399)
T KOG0296|consen 66 SVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG-ELTGHKDSVTCCSFSHDGTLLATGD----MSGKVLVFKVSTGGE 140 (399)
T ss_pred ceEEEEeCCCCceEEecCCCceEEEEEccCCccee-EecCCCCceEEEEEccCceEEEecC----CCccEEEEEcccCce
Confidence 45567899988887776444378999999999543 3333 23489999997665531 23 688888888754
Q ss_pred ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeE-EEEeeCCEEEE-EeCCCC
Q 044808 226 KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDM-FVSHRGNQFFI-RRSDGG 303 (623)
Q Consensus 226 ~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~-~~~~dg~~ly~-sn~~g~ 303 (623)
+ ..++++.+. ..-+.|.|-+..|+..+. ...+|...+..+...+.+......... .|.|+|+++.- ...
T Consensus 141 ~-~~~~~e~~d--ieWl~WHp~a~illAG~~---DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d--- 211 (399)
T KOG0296|consen 141 Q-WKLDQEVED--IEWLKWHPRAHILLAGST---DGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD--- 211 (399)
T ss_pred E-EEeecccCc--eEEEEecccccEEEeecC---CCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC---
Confidence 2 223333222 233678998877766443 346777777664313333332222222 47888888776 442
Q ss_pred CCeEEEEEeCCCCC
Q 044808 304 FHSDVLTCPVDNTF 317 (623)
Q Consensus 304 ~~~~L~~~d~~~~~ 317 (623)
..|...+++++.
T Consensus 212 --gti~~Wn~ktg~ 223 (399)
T KOG0296|consen 212 --GTIIVWNPKTGQ 223 (399)
T ss_pred --ceEEEEecCCCc
Confidence 357777777764
No 255
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=95.89 E-value=0.15 Score=50.58 Aligned_cols=185 Identities=14% Similarity=0.168 Sum_probs=103.8
Q ss_pred EeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCccc----eeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCcc
Q 044808 152 ITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQGCL----EFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQSK 226 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~~~----~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~~ 226 (623)
+..+++|.|+..|.-+....+++|--+++|+.+.+ +.+-+ ...|++|| .++-.+.|. .|..++..+...
T Consensus 309 vt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKE-frGHsSyvn~a~ft~dG~~iisaSsDg----tvkvW~~KtteC- 382 (508)
T KOG0275|consen 309 VTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKE-FRGHSSYVNEATFTDDGHHIISASSDG----TVKVWHGKTTEC- 382 (508)
T ss_pred eeEEEEccCcchhhcccccceEEEeccccchhHHH-hcCccccccceEEcCCCCeEEEecCCc----cEEEecCcchhh-
Confidence 55679999999987776555899999999998863 33322 38899999 666555443 244455444322
Q ss_pred cEEEEeecCCceeE-EE-EEcCCCcEEEEEeecceeeEEEEEECCCCCceeecC--CCccce--eEEEEeeCCEEEEEeC
Q 044808 227 DTCLYRTREDLFDL-TL-EASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLP--PWHLGI--DMFVSHRGNQFFIRRS 300 (623)
Q Consensus 227 d~lv~~~~~~~~~~-~~-~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~--~~~~~~--~~~~~~dg~~ly~sn~ 300 (623)
.-.|.....++.+ ++ -+.++-.++++ .+ .++.+|++++.+.- .+.+. +|+.|. ...++|.|+++|.-..
T Consensus 383 -~~Tfk~~~~d~~vnsv~~~PKnpeh~iV-CN--rsntv~imn~qGQv-VrsfsSGkREgGdFi~~~lSpkGewiYcigE 457 (508)
T KOG0275|consen 383 -LSTFKPLGTDYPVNSVILLPKNPEHFIV-CN--RSNTVYIMNMQGQV-VRSFSSGKREGGDFINAILSPKGEWIYCIGE 457 (508)
T ss_pred -hhhccCCCCcccceeEEEcCCCCceEEE-Ec--CCCeEEEEeccceE-EeeeccCCccCCceEEEEecCCCcEEEEEcc
Confidence 1123222122222 12 23344455443 22 34789999998643 44333 233332 2357899998887333
Q ss_pred CCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeC-CEEEEEEeeCCcceE
Q 044808 301 DGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFA-DHIAVYELEEGLPKI 353 (623)
Q Consensus 301 ~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~-~~Lv~~~~~~g~~~l 353 (623)
+ +.+|......+..++.+--+..++ | ++.-.. ..|+.++.++|.-++
T Consensus 458 D----~vlYCF~~~sG~LE~tl~VhEkdv-I-Gl~HHPHqNllAsYsEDgllKL 505 (508)
T KOG0275|consen 458 D----GVLYCFSVLSGKLERTLPVHEKDV-I-GLTHHPHQNLLASYSEDGLLKL 505 (508)
T ss_pred C----cEEEEEEeecCceeeeeecccccc-c-ccccCcccchhhhhcccchhhh
Confidence 3 367777766665444322222232 2 343222 346666666765443
No 256
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=95.87 E-value=0.31 Score=51.53 Aligned_cols=161 Identities=12% Similarity=0.068 Sum_probs=84.7
Q ss_pred cEEEeeeEECCCCCEEEEEEeCc-eEEEEECCCCCcccccc-------Ccc--ceeEEecCCeE-EEEEeCCCCCCeEEE
Q 044808 149 NYRITAFKVSPNNKLVAFRENCG-TVCVIDSETGAPAEKPI-------QGC--LEFEWAGDEAF-LYTRRNAIAEPQVWF 217 (623)
Q Consensus 149 ~~~l~~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~~~i-------~~~--~~~~WspDg~l-~y~~~d~~~~~~v~~ 217 (623)
...|..-.|.|+.+-...+.... +|++||+..-+.-...| ..+ ..-+|++||.+ +-...|. . |-.
T Consensus 268 ia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DG---S-IQ~ 343 (641)
T KOG0772|consen 268 IAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDG---S-IQI 343 (641)
T ss_pred eeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCC---c-eee
Confidence 34677789999998766555444 89999987644211111 111 23789999954 3333332 2 333
Q ss_pred EECCCCCcccEEEEeec-CCc-eeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-ce---eecCCCccceeEEEEee
Q 044808 218 HKLGEEQSKDTCLYRTR-EDL-FDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-TL---WFLPPWHLGIDMFVSHR 291 (623)
Q Consensus 218 ~~lgt~~~~d~lv~~~~-~~~-~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~~---~~l~~~~~~~~~~~~~d 291 (623)
++.+.-.......+... .++ -...+.+|.||++|+- ......+-+.||.+.+ .+ .-|.....+...-|+|+
T Consensus 344 W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlS---Rg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd 420 (641)
T KOG0772|consen 344 WDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLS---RGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPD 420 (641)
T ss_pred eecCCcccccceEeeeccCCCCceeEEEeccccchhhh---ccCCCceeeeeccccccchhhhcCCCccCCCCccccCCC
Confidence 44443322222223222 222 2346789999999862 2334456666776654 11 11111122223458887
Q ss_pred CCEEEE-EeC-CCCCCeEEEEEeCCCC
Q 044808 292 GNQFFI-RRS-DGGFHSDVLTCPVDNT 316 (623)
Q Consensus 292 g~~ly~-sn~-~g~~~~~L~~~d~~~~ 316 (623)
...++- |.. .+.....|+.+|..+.
T Consensus 421 ~kli~TGtS~~~~~~~g~L~f~d~~t~ 447 (641)
T KOG0772|consen 421 DKLILTGTSAPNGMTAGTLFFFDRMTL 447 (641)
T ss_pred ceEEEecccccCCCCCceEEEEeccce
Confidence 665544 442 2233346777775443
No 257
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.82 E-value=1.3 Score=49.18 Aligned_cols=144 Identities=15% Similarity=0.067 Sum_probs=78.6
Q ss_pred EECCCCCEEEEEEeCc-eEEEEECCCCCcccc-ccCc-cceeEEecCCeEEEEE-eCCCCCCeEEEEECCCCCcccEEEE
Q 044808 156 KVSPNNKLVAFRENCG-TVCVIDSETGAPAEK-PIQG-CLEFEWAGDEAFLYTR-RNAIAEPQVWFHKLGEEQSKDTCLY 231 (623)
Q Consensus 156 ~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~~-~i~~-~~~~~WspDg~l~y~~-~d~~~~~~v~~~~lgt~~~~d~lv~ 231 (623)
=++|||+.|--..... .+.++|.++.++... .+++ ...+.+++||+.+|+. ++......+-..+.++. ...++|
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~--d~~vvf 276 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAER--DWVVVF 276 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccC--ceEEEE
Confidence 4789999773332212 788999998876543 2222 2358999999555444 33211113333333221 122233
Q ss_pred eecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCC----CCceeec--CCCccceeEEEEeeCCEEEEEeCCCCCC
Q 044808 232 RTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSR----PETLWFL--PPWHLGIDMFVSHRGNQFFIRRSDGGFH 305 (623)
Q Consensus 232 ~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~----~~~~~~l--~~~~~~~~~~~~~dg~~ly~sn~~g~~~ 305 (623)
.-.. .....+||++.++. .+.|-++|..+ +.+.... .+.. -....++|||+++|+++.. .+.
T Consensus 277 ni~~-----iea~vkdGK~~~V~-----gn~V~VID~~t~~~~~~~v~~yIPVGKs-PHGV~vSPDGkylyVankl-S~t 344 (635)
T PRK02888 277 NIAR-----IEEAVKAGKFKTIG-----GSKVPVVDGRKAANAGSALTRYVPVPKN-PHGVNTSPDGKYFIANGKL-SPT 344 (635)
T ss_pred chHH-----HHHhhhCCCEEEEC-----CCEEEEEECCccccCCcceEEEEECCCC-ccceEECCCCCEEEEeCCC-CCc
Confidence 2110 01357899988762 46788999887 2112221 2211 1124688999999987765 444
Q ss_pred eEEEEEeCCC
Q 044808 306 SDVLTCPVDN 315 (623)
Q Consensus 306 ~~L~~~d~~~ 315 (623)
+-.+|++.
T Consensus 345 --VSVIDv~k 352 (635)
T PRK02888 345 --VTVIDVRK 352 (635)
T ss_pred --EEEEEChh
Confidence 55555544
No 258
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=95.80 E-value=0.07 Score=57.43 Aligned_cols=144 Identities=14% Similarity=0.104 Sum_probs=78.1
Q ss_pred EEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCC--------CC-------CCchhhhHHHHHCCcEEEEEe
Q 044808 445 RAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPS--------SY-------SNSIASRLTILDRGIIFAIAH 509 (623)
Q Consensus 445 ~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~--------~~-------~~~~~~~~~~~~~G~~v~~~~ 509 (623)
.+....+..+.-|++..++ + ....|+||+..||||.+.. |- ........+|.+. .-++.+|
T Consensus 17 ~~~~~~~~~lfyw~~~s~~--~-~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~~-an~l~iD 92 (415)
T PF00450_consen 17 PVNDNENAHLFYWFFESRN--D-PEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNKF-ANLLFID 92 (415)
T ss_dssp EECTTTTEEEEEEEEE-SS--G-GCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGGT-SEEEEE-
T ss_pred ecCCCCCcEEEEEEEEeCC--C-CCCccEEEEecCCceeccccccccccCceEEeecccccccccccccccc-cceEEEe
Confidence 3444466677777444333 2 3567999999999997732 10 1100223456555 5667778
Q ss_pred ccCCCcCChhHHHcccccCCCchHhHHHHHHH-HHHHcCCCCCCcEEEEEeChHHHHHH----HHHHhCC------Ceee
Q 044808 510 VRGGDEKGKQWHENGKLLNKRNTFTDFIACAD-YLIKSNYCSEDNLCIEGGSAGGMLIG----AVLNMRP------ELFK 578 (623)
Q Consensus 510 ~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~l~~----~~~~~~p------~~f~ 578 (623)
.=-|.||...-.....-..-....+|+..+++ |+.+.+--....+.|.|-||||..+- .++.+.. =-++
T Consensus 93 ~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLk 172 (415)
T PF00450_consen 93 QPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLK 172 (415)
T ss_dssp -STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEE
T ss_pred ecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccc
Confidence 44444454321111100111235566666655 45556766667999999999998643 3333331 2389
Q ss_pred EEEecCCccchhhh
Q 044808 579 VAVADVPSVDVLTT 592 (623)
Q Consensus 579 a~v~~~~~~d~~~~ 592 (623)
.++.+.|++|....
T Consensus 173 Gi~IGng~~dp~~~ 186 (415)
T PF00450_consen 173 GIAIGNGWIDPRIQ 186 (415)
T ss_dssp EEEEESE-SBHHHH
T ss_pred cceecCcccccccc
Confidence 99999999998643
No 259
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=95.77 E-value=0.097 Score=54.94 Aligned_cols=144 Identities=18% Similarity=0.213 Sum_probs=82.4
Q ss_pred eeEECCCCCEEEEEE-eCceEEEEECCCCCcccc---ccCccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCcccE
Q 044808 154 AFKVSPNNKLVAFRE-NCGTVCVIDSETGAPAEK---PIQGCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQSKDT 228 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~-~~~~l~v~dl~tg~~~~~---~i~~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~~d~ 228 (623)
.+++|||.|. +|+. ..++|.|||+.....+.+ ..++++.+.-++|| +|+-.-.|. .|..+++.++.
T Consensus 514 ALa~spDakv-cFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDn----tvRcWDlregr---- 584 (705)
T KOG0639|consen 514 ALAISPDAKV-CFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDN----TVRCWDLREGR---- 584 (705)
T ss_pred hhhcCCccce-eeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCcc----ceeehhhhhhh----
Confidence 3689999985 5654 444999999988766542 22345558899999 554333332 47778877652
Q ss_pred EEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccce-eEEEEeeCCEEEE-EeCCCCCCe
Q 044808 229 CLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGI-DMFVSHRGNQFFI-RRSDGGFHS 306 (623)
Q Consensus 229 lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~-~~~~~~dg~~ly~-sn~~g~~~~ 306 (623)
.+.+..-....+++..+|.+.||++.-. ++.++++....++ -..+.-.+.-+ ...|++-|+ +++ +.+++. .
T Consensus 585 qlqqhdF~SQIfSLg~cP~~dWlavGMe---ns~vevlh~skp~-kyqlhlheScVLSlKFa~cGk-wfvStGkDnl--L 657 (705)
T KOG0639|consen 585 QLQQHDFSSQIFSLGYCPTGDWLAVGME---NSNVEVLHTSKPE-KYQLHLHESCVLSLKFAYCGK-WFVSTGKDNL--L 657 (705)
T ss_pred hhhhhhhhhhheecccCCCccceeeecc---cCcEEEEecCCcc-ceeecccccEEEEEEecccCc-eeeecCchhh--h
Confidence 1222111111345567899999988543 3567777776654 22222222111 123666554 566 666632 3
Q ss_pred EEEEEeC
Q 044808 307 DVLTCPV 313 (623)
Q Consensus 307 ~L~~~d~ 313 (623)
..|+++.
T Consensus 658 nawrtPy 664 (705)
T KOG0639|consen 658 NAWRTPY 664 (705)
T ss_pred hhccCcc
Confidence 3555543
No 260
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=95.73 E-value=2.3 Score=41.76 Aligned_cols=189 Identities=12% Similarity=0.126 Sum_probs=102.0
Q ss_pred EEeeeEECCC-CCEEEEEEeCceEEEEECCCCCccc--cccC-----ccceeEEecCCe-EEEEEeCCCCCCeEEEEECC
Q 044808 151 RITAFKVSPN-NKLVAFRENCGTVCVIDSETGAPAE--KPIQ-----GCLEFEWAGDEA-FLYTRRNAIAEPQVWFHKLG 221 (623)
Q Consensus 151 ~l~~~~~SPD-G~~lA~~~~~~~l~v~dl~tg~~~~--~~i~-----~~~~~~WspDg~-l~y~~~d~~~~~~v~~~~lg 221 (623)
.+-.++|+|- |..||-......|+++++.++.... ..++ .+.+++|+|.|+ ++-.++|.+ .+..++.
T Consensus 16 r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t---~~Iw~k~- 91 (312)
T KOG0645|consen 16 RVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT---VVIWKKE- 91 (312)
T ss_pred cEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce---EEEeecC-
Confidence 4667899999 8877766555589999998654322 2232 234699999995 555555542 2222332
Q ss_pred CCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCcee---ecCCCccceeEEEEeeCCEEEE-
Q 044808 222 EEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLW---FLPPWHLGIDMFVSHRGNQFFI- 297 (623)
Q Consensus 222 t~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~---~l~~~~~~~~~~~~~dg~~ly~- 297 (623)
.+.-+-.-+.+..+. =.=.++||++|+||+-.+. ...||+...+.+.++. .|.++...+...+.|.-..|+|
T Consensus 92 ~~efecv~~lEGHEn-EVK~Vaws~sG~~LATCSR---DKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S 167 (312)
T KOG0645|consen 92 DGEFECVATLEGHEN-EVKCVAWSASGNYLATCSR---DKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFS 167 (312)
T ss_pred CCceeEEeeeecccc-ceeEEEEcCCCCEEEEeeC---CCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEE
Confidence 221111223332221 1235789999999875433 3467777665433233 3566666555444444455777
Q ss_pred EeCCCCCCeEEEEEeCCCCCceee----EEcCCCCceEeEEEEe--CCEEEEEEeeCCcceEEE
Q 044808 298 RRSDGGFHSDVLTCPVDNTFETTV----LIPHRERVRVEEVRLF--ADHIAVYELEEGLPKITT 355 (623)
Q Consensus 298 sn~~g~~~~~L~~~d~~~~~~~~~----li~~~~d~~i~~~~~~--~~~Lv~~~~~~g~~~l~v 355 (623)
...++ ..++|+-+. .. .| .+.++.. .+-.+... +.+|+ +..+++.-+|+.
T Consensus 168 ~SYDn--TIk~~~~~~-dd---dW~c~~tl~g~~~-TVW~~~F~~~G~rl~-s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 168 CSYDN--TIKVYRDED-DD---DWECVQTLDGHEN-TVWSLAFDNIGSRLV-SCSDDGTVSIWR 223 (312)
T ss_pred eccCC--eEEEEeecC-CC---CeeEEEEecCccc-eEEEEEecCCCceEE-EecCCcceEeee
Confidence 55552 466776543 21 24 3333332 33333333 33444 445555555655
No 261
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=95.70 E-value=0.044 Score=53.16 Aligned_cols=91 Identities=18% Similarity=0.175 Sum_probs=48.0
Q ss_pred ccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcE---EEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcC
Q 044808 471 DPLLLFGYGSYGLGPSSYSNSIASRLTILDRGII---FAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSN 547 (623)
Q Consensus 471 ~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~---v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 547 (623)
.|+|| +||- +......|. .....|.++||. |...++-...... ...... ........+.+.++-+. .
T Consensus 2 ~PVVl-VHG~-~~~~~~~w~--~~~~~l~~~GY~~~~vya~tyg~~~~~~--~~~~~~--~~~~~~~~l~~fI~~Vl--~ 71 (219)
T PF01674_consen 2 RPVVL-VHGT-GGNAYSNWS--TLAPYLKAAGYCDSEVYALTYGSGNGSP--SVQNAH--MSCESAKQLRAFIDAVL--A 71 (219)
T ss_dssp --EEE-E--T-TTTTCGGCC--HHHHHHHHTT--CCCEEEE--S-CCHHT--HHHHHH--B-HHHHHHHHHHHHHHH--H
T ss_pred CCEEE-ECCC-CcchhhCHH--HHHHHHHHcCCCcceeEeccCCCCCCCC--cccccc--cchhhHHHHHHHHHHHH--H
Confidence 57755 8984 344455788 888899999999 7888885443311 111111 11122233333444333 3
Q ss_pred CCCCCcEEEEEeChHHHHHHHHHHh
Q 044808 548 YCSEDNLCIEGGSAGGMLIGAVLNM 572 (623)
Q Consensus 548 ~~d~~ri~i~G~S~GG~l~~~~~~~ 572 (623)
++-. ||=|.|+|.||.++-+.+..
T Consensus 72 ~TGa-kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 72 YTGA-KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp HHT---EEEEEETCHHHHHHHHHHH
T ss_pred hhCC-EEEEEEcCCcCHHHHHHHHH
Confidence 4556 99999999999999888753
No 262
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.69 E-value=0.66 Score=49.64 Aligned_cols=157 Identities=12% Similarity=0.115 Sum_probs=91.6
Q ss_pred EeeeEECCCCCEEEEEEeCc-----eEEEEECCCCCcccc-ccCccce--eEEecCC-eEEEEEe--CCCC--C---C-e
Q 044808 152 ITAFKVSPNNKLVAFRENCG-----TVCVIDSETGAPAEK-PIQGCLE--FEWAGDE-AFLYTRR--NAIA--E---P-Q 214 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~-----~l~v~dl~tg~~~~~-~i~~~~~--~~WspDg-~l~y~~~--d~~~--~---~-~ 214 (623)
|..+.|||-+..|||-.-.. .+-++.+.+++.+.. .+.++.. +.|-..| .|++-.. .... . . +
T Consensus 349 Ir~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~e 428 (698)
T KOG2314|consen 349 IRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLE 428 (698)
T ss_pred ccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEE
Confidence 56789999999999986443 788899999887653 4556553 9999888 6665432 1111 1 1 4
Q ss_pred EEEEECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecce--eeEEEEEECCCCCceeecC--CCccceeEEEEe
Q 044808 215 VWFHKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKV--TGFVYYFDVSRPETLWFLP--PWHLGIDMFVSH 290 (623)
Q Consensus 215 v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~--~s~l~~~dl~~~~~~~~l~--~~~~~~~~~~~~ 290 (623)
|++.+-..- .+.+.+-.+ -.+..+|-|.|...++.+.+.. +-..|-+...... +.++. +...-....|+|
T Consensus 429 IfrireKdI---pve~velke--~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~-~~lVk~~dk~~~N~vfwsP 502 (698)
T KOG2314|consen 429 IFRIREKDI---PVEVVELKE--SVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK-PSLVKELDKKFANTVFWSP 502 (698)
T ss_pred EEEeeccCC---Cceeeecch--heeeeeeccCCCeEEEEEccccccceeEEEeecCCCc-hhhhhhhcccccceEEEcC
Confidence 444432111 122222222 2456789999987666665433 3355656543333 43332 222112346899
Q ss_pred eCCEEEEEeCCCCCCeEEEEEeCCC
Q 044808 291 RGNQFFIRRSDGGFHSDVLTCPVDN 315 (623)
Q Consensus 291 dg~~ly~sn~~g~~~~~L~~~d~~~ 315 (623)
.|..+.+.+.. ..++.|.-+|.+.
T Consensus 503 kG~fvvva~l~-s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 503 KGRFVVVAALV-SRRGDLEFYDTDY 526 (698)
T ss_pred CCcEEEEEEec-ccccceEEEecch
Confidence 88866664443 2456777777653
No 263
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=95.65 E-value=1.4 Score=45.89 Aligned_cols=151 Identities=15% Similarity=0.130 Sum_probs=92.4
Q ss_pred EeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccC---cc--ceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcc
Q 044808 152 ITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQ---GC--LEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSK 226 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~---~~--~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~ 226 (623)
+......|.|+|+..+.+++.+.+.|+.+|..+..... ++ .+.++-|||-+|-+-..+ ..|..+++.++.
T Consensus 306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d---~~vkiwdlks~~-- 380 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPD---GVVKIWDLKSQT-- 380 (506)
T ss_pred ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCC---ceEEEEEcCCcc--
Confidence 46778999999999999988999999999986542222 22 248899998554432211 157778887653
Q ss_pred cEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeec--CCCccceeEEEEeeCCEEEEEeCCCCC
Q 044808 227 DTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFL--PPWHLGIDMFVSHRGNQFFIRRSDGGF 304 (623)
Q Consensus 227 d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l--~~~~~~~~~~~~~dg~~ly~sn~~g~~ 304 (623)
...-|.. +..=.-.+++|.+|=||+..+.+ ..|.+.|+..-..++.+ ....+-..+.|+..|..|.+...
T Consensus 381 ~~a~Fpg-ht~~vk~i~FsENGY~Lat~add---~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~---- 452 (506)
T KOG0289|consen 381 NVAKFPG-HTGPVKAISFSENGYWLATAADD---GSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGS---- 452 (506)
T ss_pred ccccCCC-CCCceeEEEeccCceEEEEEecC---CeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecc----
Confidence 2223432 22223467899999888765443 23888888754422222 12222224567776665555411
Q ss_pred CeEEEEEeCCC
Q 044808 305 HSDVLTCPVDN 315 (623)
Q Consensus 305 ~~~L~~~d~~~ 315 (623)
..+||.++-.+
T Consensus 453 ~l~Vy~~~k~~ 463 (506)
T KOG0289|consen 453 DLQVYICKKKT 463 (506)
T ss_pred eeEEEEEeccc
Confidence 35788876443
No 264
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=0.4 Score=49.43 Aligned_cols=174 Identities=10% Similarity=0.024 Sum_probs=90.6
Q ss_pred eeeEECCCCCEEEEEEeCceEEEEECCCCCccccccC---ccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCcccE
Q 044808 153 TAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQ---GCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQSKDT 228 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~---~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~~d~ 228 (623)
..+++++||..||-+-..+.++|++..+...+-+.+. .+..+.||||| .++++..+. ..||-.+-|..-+ .
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~---~~VW~~~~g~~~a--~ 222 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADS---ARVWSVNTGAALA--R 222 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCc---eEEEEeccCchhh--h
Confidence 5689999999999987666999999766655432222 34469999999 566665441 1455544331110 0
Q ss_pred EEEeecCCceeEEEEEcCCC--cEEEEEeec--ceeeEEEEEECCCCC---ceeecCCCccceeE-EEEeeCCEEEE-Ee
Q 044808 229 CLYRTREDLFDLTLEASESK--KFLFVKSKT--KVTGFVYYFDVSRPE---TLWFLPPWHLGIDM-FVSHRGNQFFI-RR 299 (623)
Q Consensus 229 lv~~~~~~~~~~~~~~S~Dg--~~l~i~s~~--~~~s~l~~~dl~~~~---~~~~l~~~~~~~~~-~~~~dg~~ly~-sn 299 (623)
+-=.+.+. .+..+.++.|+ ..|++.+.. ...-.++.+.+-.+. ..+....+.+.+.. .++.+|+.+.+ |+
T Consensus 223 ~t~~~k~~-~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 223 KTPFSKDE-MFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cCCcccch-hhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 00011111 22334555555 333333322 222233333333331 23334445555443 68899998888 88
Q ss_pred CCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeC
Q 044808 300 SDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFA 338 (623)
Q Consensus 300 ~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~ 338 (623)
.+ .|..++...-+.- .++++-....|.++....
T Consensus 302 dG-----sVai~~~~~lq~~-~~vk~aH~~~VT~ltF~P 334 (398)
T KOG0771|consen 302 DG-----SVAIYDAKSLQRL-QYVKEAHLGFVTGLTFSP 334 (398)
T ss_pred CC-----cEEEEEeceeeee-EeehhhheeeeeeEEEcC
Confidence 54 3555554333211 144444333455555433
No 265
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=95.55 E-value=0.18 Score=53.98 Aligned_cols=105 Identities=18% Similarity=0.233 Sum_probs=72.7
Q ss_pred CCccEEEE----EcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHH
Q 044808 469 GSDPLLLF----GYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLI 544 (623)
Q Consensus 469 ~~~P~il~----~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~ 544 (623)
.+.|.||. +|| ||+. +|....+.-.-+..|.-|..+-+.=-.+-| .++.|+..+....+
T Consensus 67 ~krP~vViDPRAGHG-pGIG---GFK~dSevG~AL~~GHPvYFV~F~p~P~pg-------------QTl~DV~~ae~~Fv 129 (581)
T PF11339_consen 67 TKRPFVVIDPRAGHG-PGIG---GFKPDSEVGVALRAGHPVYFVGFFPEPEPG-------------QTLEDVMRAEAAFV 129 (581)
T ss_pred CCCCeEEeCCCCCCC-CCcc---CCCcccHHHHHHHcCCCeEEEEecCCCCCC-------------CcHHHHHHHHHHHH
Confidence 46788875 576 5665 555335666666779888887776444333 47788877655433
Q ss_pred Hc-C--CCCCCcEEEEEeChHHHHHHHHHHhCCCeee-EEEecCCccchh
Q 044808 545 KS-N--YCSEDNLCIEGGSAGGMLIGAVLNMRPELFK-VAVADVPSVDVL 590 (623)
Q Consensus 545 ~~-~--~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~-a~v~~~~~~d~~ 590 (623)
+. . -=+..|.++.|...||-+++.+++.+||++. .+++++|+.=|.
T Consensus 130 ~~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplvlaGaPlsywa 179 (581)
T PF11339_consen 130 EEVAERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLVLAGAPLSYWA 179 (581)
T ss_pred HHHHHhCCCCCCceEEeccHHHHHHHHHHhcCcCccCceeecCCCccccc
Confidence 31 1 1122499999999999999999999999985 567788876554
No 266
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=95.48 E-value=3 Score=41.36 Aligned_cols=199 Identities=10% Similarity=0.160 Sum_probs=99.2
Q ss_pred eEEeechhhcccCCCCcEEEeeeEECCCCCEEEEEEeCc-eEEEEECCCCCcccc-ccCcc---ceeEEecCCeEEEEEe
Q 044808 133 EVIIDEEVIKYKNSLENYRITAFKVSPNNKLVAFRENCG-TVCVIDSETGAPAEK-PIQGC---LEFEWAGDEAFLYTRR 207 (623)
Q Consensus 133 ~vllD~n~~a~~~~~~~~~l~~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~~-~i~~~---~~~~WspDg~l~y~~~ 207 (623)
++.++.-.++.-. -.++++++.||.+.|+...|.. .|+.+++. |+++.. .+.+. .++++..++.++.+.
T Consensus 9 ~~~i~~~~l~g~~----~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~- 82 (248)
T PF06977_consen 9 RVVIEAKPLPGIL----DELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSE- 82 (248)
T ss_dssp EEEEEEEE-TT------S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEE-
T ss_pred EEEEeeeECCCcc----CCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEE-
Confidence 5556644444211 1388999999999888888777 99999985 777653 34443 359998887766654
Q ss_pred CCCCCC-eEEEEECCCCCc----ccEEEEe--ec-CCce-eEEEEEcCCCcEEEEEeecceeeEEEEEEC--CCCC-cee
Q 044808 208 NAIAEP-QVWFHKLGEEQS----KDTCLYR--TR-EDLF-DLTLEASESKKFLFVKSKTKVTGFVYYFDV--SRPE-TLW 275 (623)
Q Consensus 208 d~~~~~-~v~~~~lgt~~~----~d~lv~~--~~-~~~~-~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl--~~~~-~~~ 275 (623)
.|. +++.+++..... .+..-+. .. .... +=+++|.+.++.|++. ..+....||-++. .... ...
T Consensus 83 ---Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~-kE~~P~~l~~~~~~~~~~~~~~~ 158 (248)
T PF06977_consen 83 ---ERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVA-KERKPKRLYEVNGFPGGFDLFVS 158 (248)
T ss_dssp ---TTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEE-EESSSEEEEEEESTT-SS--EEE
T ss_pred ---cCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEE-eCCCChhhEEEccccCccceeec
Confidence 233 788887743221 1111111 11 0111 2367899988877764 3333456788876 2211 000
Q ss_pred e---cCC---Cccce-eEEEEeeCCEEEE-EeCCCCCCeEEEEEeCCCCCceeeEEcCC------CCceEeEEEEeCC-E
Q 044808 276 F---LPP---WHLGI-DMFVSHRGNQFFI-RRSDGGFHSDVLTCPVDNTFETTVLIPHR------ERVRVEEVRLFAD-H 340 (623)
Q Consensus 276 ~---l~~---~~~~~-~~~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~~~~~li~~~------~d~~i~~~~~~~~-~ 340 (623)
. +.. ..... ...+.+..++||+ |... ..|+.+|.+..-....-+... .-...++++.+.+ .
T Consensus 159 ~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es----~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 159 DDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDES----RLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp E-HHHH-HT--SS---EEEEETTTTEEEEEETTT----TEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred cccccccccceeccccceEEcCCCCeEEEEECCC----CeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 0 000 00000 1235677789999 8875 468888854331222212211 0123678888764 4
Q ss_pred EEEEE
Q 044808 341 IAVYE 345 (623)
Q Consensus 341 Lv~~~ 345 (623)
||++.
T Consensus 235 LYIvs 239 (248)
T PF06977_consen 235 LYIVS 239 (248)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 55555
No 267
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=95.47 E-value=0.61 Score=45.05 Aligned_cols=187 Identities=14% Similarity=0.152 Sum_probs=105.0
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCc----cceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCc
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQG----CLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~----~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~ 225 (623)
-+...++|.|.++|.-+....-|+|+|+..-+.-+.++.+ +..+.|.... .|+-...+. .|.+++..|+..
T Consensus 102 ivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~----tVRLWD~rTgt~ 177 (334)
T KOG0278|consen 102 IVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK----TVRLWDHRTGTE 177 (334)
T ss_pred eeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC----ceEEEEeccCcE
Confidence 4556778888887766654447889999876655544543 2348887665 555443222 355566656532
Q ss_pred ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCC--ccceeE-EEEeeCCEEEE-EeCC
Q 044808 226 KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPW--HLGIDM-FVSHRGNQFFI-RRSD 301 (623)
Q Consensus 226 ~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~--~~~~~~-~~~~dg~~ly~-sn~~ 301 (623)
+.-.+-+.+ .-++.+|+||++|.+.-. +.|-..|..+-. ++... .-+++. ++.|+. .+|+ -+.+
T Consensus 178 --v~sL~~~s~--VtSlEvs~dG~ilTia~g----ssV~Fwdaksf~---~lKs~k~P~nV~SASL~P~k-~~fVaGged 245 (334)
T KOG0278|consen 178 --VQSLEFNSP--VTSLEVSQDGRILTIAYG----SSVKFWDAKSFG---LLKSYKMPCNVESASLHPKK-EFFVAGGED 245 (334)
T ss_pred --EEEEecCCC--CcceeeccCCCEEEEecC----ceeEEecccccc---ceeeccCccccccccccCCC-ceEEecCcc
Confidence 222222221 234678999999877432 345555655422 22111 112222 466654 5676 5554
Q ss_pred CCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeC-CEEEEEEeeCCcceEEEEEC
Q 044808 302 GGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFA-DHIAVYELEEGLPKITTYCL 358 (623)
Q Consensus 302 g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~-~~Lv~~~~~~g~~~l~v~~l 358 (623)
++++++|..++.........+.. .+-.+.... +.++.+..++|.-+|+....
T Consensus 246 ----~~~~kfDy~TgeEi~~~nkgh~g-pVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 246 ----FKVYKFDYNTGEEIGSYNKGHFG-PVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred ----eEEEEEeccCCceeeecccCCCC-ceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 78999998877532111122222 233444444 45888888899867776543
No 268
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=95.45 E-value=0.77 Score=47.70 Aligned_cols=117 Identities=14% Similarity=0.082 Sum_probs=72.8
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCc----cceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcc
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQG----CLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSK 226 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~----~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~ 226 (623)
.+...++.|||-.++-+...+.|.|||+.++..+. .+++ +..+.|+.+|.++.+..++. .|.++++.....
T Consensus 349 ~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a-~Fpght~~vk~i~FsENGY~Lat~add~---~V~lwDLRKl~n- 423 (506)
T KOG0289|consen 349 EYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA-KFPGHTGPVKAISFSENGYWLATAADDG---SVKLWDLRKLKN- 423 (506)
T ss_pred eeEEeeEcCCceEEeccCCCceEEEEEcCCccccc-cCCCCCCceeEEEeccCceEEEEEecCC---eEEEEEehhhcc-
Confidence 35667899999877766666699999999987654 3443 33599999995444444332 388888875432
Q ss_pred cEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeec
Q 044808 227 DTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFL 277 (623)
Q Consensus 227 d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l 277 (623)
..-|.-++..=..++.+...|++|.+. ..+-.||..+-.+.. |.++
T Consensus 424 -~kt~~l~~~~~v~s~~fD~SGt~L~~~---g~~l~Vy~~~k~~k~-W~~~ 469 (506)
T KOG0289|consen 424 -FKTIQLDEKKEVNSLSFDQSGTYLGIA---GSDLQVYICKKKTKS-WTEI 469 (506)
T ss_pred -cceeeccccccceeEEEcCCCCeEEee---cceeEEEEEeccccc-ceee
Confidence 122222111113456788999999875 223456766655554 5544
No 269
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=95.44 E-value=0.012 Score=55.87 Aligned_cols=85 Identities=16% Similarity=0.243 Sum_probs=64.1
Q ss_pred HHHHHCCcEEEEEeccCCCcCC--------hhHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHH
Q 044808 496 LTILDRGIIFAIAHVRGGDEKG--------KQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIG 567 (623)
Q Consensus 496 ~~~~~~G~~v~~~~~RG~~~~G--------~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~ 567 (623)
-.++..||.|++||+=.|.-+- ..|.+ +..-...+.|+-+.++||..+| ++.+||++|.-+||-.+.
T Consensus 61 dk~A~~Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~---~~~~~~~~~~i~~v~k~lk~~g--~~kkIGv~GfCwGak~vv 135 (242)
T KOG3043|consen 61 DKVALNGYTVLVPDFFRGDPWSPSLQKSERPEWMK---GHSPPKIWKDITAVVKWLKNHG--DSKKIGVVGFCWGAKVVV 135 (242)
T ss_pred HHHhcCCcEEEcchhhcCCCCCCCCChhhhHHHHh---cCCcccchhHHHHHHHHHHHcC--CcceeeEEEEeecceEEE
Confidence 4556679999999976552221 23443 3344568899999999999776 458999999999999988
Q ss_pred HHHHhCCCeeeEEEecCCc
Q 044808 568 AVLNMRPELFKVAVADVPS 586 (623)
Q Consensus 568 ~~~~~~p~~f~a~v~~~~~ 586 (623)
..+...| +|.|+++..|.
T Consensus 136 ~~~~~~~-~f~a~v~~hps 153 (242)
T KOG3043|consen 136 TLSAKDP-EFDAGVSFHPS 153 (242)
T ss_pred Eeeccch-hheeeeEecCC
Confidence 7777766 78888887774
No 270
>PRK07868 acyl-CoA synthetase; Validated
Probab=95.43 E-value=0.088 Score=63.40 Aligned_cols=107 Identities=16% Similarity=0.062 Sum_probs=62.7
Q ss_pred ccEEEEEcCCCCCCCCCCCCc-hhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHH----HHHHHHHHH
Q 044808 471 DPLLLFGYGSYGLGPSSYSNS-IASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDF----IACADYLIK 545 (623)
Q Consensus 471 ~P~il~~~Gg~~~~~~~~~~~-~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~----~~~~~~l~~ 545 (623)
.|.||++||-........... ......|+++||.|..+|.+.++ . . .. . ....+.|. .++++.+.+
T Consensus 67 ~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~g~~v~~~d~G~~~-~--~--~~---~-~~~~l~~~i~~l~~~l~~v~~ 137 (994)
T PRK07868 67 GPPVLMVHPMMMSADMWDVTRDDGAVGILHRAGLDPWVIDFGSPD-K--V--EG---G-MERNLADHVVALSEAIDTVKD 137 (994)
T ss_pred CCcEEEECCCCCCccceecCCcccHHHHHHHCCCEEEEEcCCCCC-h--h--Hc---C-ccCCHHHHHHHHHHHHHHHHH
Confidence 366778999654443222210 01256788999999999963221 1 0 00 0 11233333 444444433
Q ss_pred cCCCCCCcEEEEEeChHHHHHHHHHHh-CCCeeeEEEecCCccch
Q 044808 546 SNYCSEDNLCIEGGSAGGMLIGAVLNM-RPELFKVAVADVPSVDV 589 (623)
Q Consensus 546 ~~~~d~~ri~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~~~~d~ 589 (623)
.. -+++-+.|+|.||.++...+.. .|++.+..|.....+|+
T Consensus 138 ~~---~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lvl~~~~~d~ 179 (994)
T PRK07868 138 VT---GRDVHLVGYSQGGMFCYQAAAYRRSKDIASIVTFGSPVDT 179 (994)
T ss_pred hh---CCceEEEEEChhHHHHHHHHHhcCCCccceEEEEeccccc
Confidence 33 2579999999999999766654 45678888765555553
No 271
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=95.41 E-value=2.5 Score=46.41 Aligned_cols=136 Identities=11% Similarity=0.074 Sum_probs=88.2
Q ss_pred EeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCc-----cceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcc
Q 044808 152 ITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQG-----CLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSK 226 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~-----~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~ 226 (623)
|..+++|.+.+.||.+...++|-+|++..+-.+...|++ +.+++|++.++||-..... .|..+++-+..
T Consensus 28 I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg----~i~EwDl~~lk-- 101 (691)
T KOG2048|consen 28 IVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSG----SITEWDLHTLK-- 101 (691)
T ss_pred eEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCc----eEEEEecccCc--
Confidence 557799999999999998889999999887555444432 2359999666887654332 57778887663
Q ss_pred cEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-ceeecCCCccceeE--EEEeeCCEEEE
Q 044808 227 DTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-TLWFLPPWHLGIDM--FVSHRGNQFFI 297 (623)
Q Consensus 227 d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l~~~~~~~~~--~~~~dg~~ly~ 297 (623)
....++ ....-..+++.+|.+..+.+...++ .++.++...+. +.+....++.+... .|.+++.+++.
T Consensus 102 ~~~~~d-~~gg~IWsiai~p~~~~l~IgcddG---vl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~ 171 (691)
T KOG2048|consen 102 QKYNID-SNGGAIWSIAINPENTILAIGCDDG---VLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAG 171 (691)
T ss_pred eeEEec-CCCcceeEEEeCCccceEEeecCCc---eEEEEecCCceEEEEeecccccceEEEEEecCCccEEEe
Confidence 222222 2333345667788888877753332 66777766655 55566666655433 45566655655
No 272
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=95.32 E-value=0.74 Score=48.30 Aligned_cols=115 Identities=13% Similarity=0.168 Sum_probs=68.8
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc---ccCccceeEEecCCeEEEEEeCCC-----CCC-eEEEEECC
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK---PIQGCLEFEWAGDEAFLYTRRNAI-----AEP-QVWFHKLG 221 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~---~i~~~~~~~WspDg~l~y~~~d~~-----~~~-~v~~~~lg 221 (623)
.+..+.|.|-|++||-.+|.++|.||....+.-..+ .-..+..+.|+|+|..--...... ... .|.++++.
T Consensus 361 ~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~ 440 (524)
T KOG0273|consen 361 EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE 440 (524)
T ss_pred ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc
Confidence 567889999999999999988999998765443321 111234578888873211111100 011 46677776
Q ss_pred CCCcccEEEE-eecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC
Q 044808 222 EEQSKDTCLY-RTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE 272 (623)
Q Consensus 222 t~~~~d~lv~-~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~ 272 (623)
.+.. +..| ....| ..++++||+|+|++-.+. ...|.+.+..+++
T Consensus 441 ~gv~--i~~f~kH~~p--VysvafS~~g~ylAsGs~---dg~V~iws~~~~~ 485 (524)
T KOG0273|consen 441 SGVP--IHTLMKHQEP--VYSVAFSPNGRYLASGSL---DGCVHIWSTKTGK 485 (524)
T ss_pred CCce--eEeeccCCCc--eEEEEecCCCcEEEecCC---CCeeEeccccchh
Confidence 6642 2333 22223 345789999999875433 2456666666654
No 273
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.31 E-value=0.37 Score=49.71 Aligned_cols=117 Identities=16% Similarity=0.142 Sum_probs=66.0
Q ss_pred cEEEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccC-c---c-ceeEEecCC---eEEEEEeCCCCCC-eEEEEE
Q 044808 149 NYRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQ-G---C-LEFEWAGDE---AFLYTRRNAIAEP-QVWFHK 219 (623)
Q Consensus 149 ~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~-~---~-~~~~WspDg---~l~y~~~d~~~~~-~v~~~~ 219 (623)
.-.+..+.+||||++||+.... ...||++.+|-.++..-+ . . ....|+.|+ .++.......... .++...
T Consensus 186 ~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~ 264 (398)
T KOG0771|consen 186 HAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDIS 264 (398)
T ss_pred cCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEee
Confidence 3468889999999999999777 799999999966552111 1 1 136777776 3333332221111 222222
Q ss_pred CCCCCcccEEEEeecCCc--eeEEEEEcCCCcEEEEEeecceeeEEEEEECCCC
Q 044808 220 LGEEQSKDTCLYRTREDL--FDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRP 271 (623)
Q Consensus 220 lgt~~~~d~lv~~~~~~~--~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~ 271 (623)
+..+. ..+.....-.. -....++|+||+++++.+.+ ..|-++++.+-
T Consensus 265 ~w~~~--~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d---GsVai~~~~~l 313 (398)
T KOG0771|consen 265 LWSGS--NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD---GSVAIYDAKSL 313 (398)
T ss_pred eeccc--cccchhhhhhccCcceeEEEcCCCcEEEEeccC---CcEEEEEecee
Confidence 22221 11111000001 13456889999999987663 45666666543
No 274
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=95.29 E-value=6.9 Score=44.69 Aligned_cols=151 Identities=15% Similarity=0.098 Sum_probs=89.4
Q ss_pred eeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCccc-eeEEe-cCC-eEEEEEeCCCCCCeEEEEECCCCCcccEE
Q 044808 153 TAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQGCL-EFEWA-GDE-AFLYTRRNAIAEPQVWFHKLGEEQSKDTC 229 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~~~-~~~Ws-pDg-~l~y~~~d~~~~~~v~~~~lgt~~~~d~l 229 (623)
..+.+.|||++|.-.-..+.|++++..+-+..++.|.... .+.|- -++ .|+..+.+. .|-+++.+.+++ +.+
T Consensus 17 t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~----tv~~y~fps~~~-~~i 91 (933)
T KOG1274|consen 17 TLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQN----TVLRYKFPSGEE-DTI 91 (933)
T ss_pred EEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccc----eEEEeeCCCCCc-cce
Confidence 4568999999776665555899988777655555665433 25554 455 455444322 578888888765 334
Q ss_pred EEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcccee-EEEEeeCCEEEEEeCCCCCCeEE
Q 044808 230 LYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGID-MFVSHRGNQFFIRRSDGGFHSDV 308 (623)
Q Consensus 230 v~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~-~~~~~dg~~ly~sn~~g~~~~~L 308 (623)
+-.-.-| .-.+.++-+|+++++.+. ...|-++++.+....+.+.+.+..+. ..++|.+..|.++.-+ +.|
T Consensus 92 L~Rftlp--~r~~~v~g~g~~iaagsd---D~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~d----G~v 162 (933)
T KOG1274|consen 92 LARFTLP--IRDLAVSGSGKMIAAGSD---DTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCD----GKV 162 (933)
T ss_pred eeeeecc--ceEEEEecCCcEEEeecC---ceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecC----ceE
Confidence 4221111 113568999999987553 34677777776652233344433332 3567777766663333 356
Q ss_pred EEEeCCCCC
Q 044808 309 LTCPVDNTF 317 (623)
Q Consensus 309 ~~~d~~~~~ 317 (623)
..+++.++.
T Consensus 163 ~iw~~~~~~ 171 (933)
T KOG1274|consen 163 QIWDLQDGI 171 (933)
T ss_pred EEEEcccch
Confidence 666666553
No 275
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=95.26 E-value=0.027 Score=60.59 Aligned_cols=87 Identities=15% Similarity=0.234 Sum_probs=60.6
Q ss_pred CCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHH
Q 044808 488 YSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIG 567 (623)
Q Consensus 488 ~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~ 567 (623)
.|. .....|.+.||++ ..|.+| +|-+|+... .....++++.+.++.+.+.. ...++.+.|+|+||+++.
T Consensus 109 ~~~--~li~~L~~~GY~~-~~dL~g---~gYDwR~~~---~~~~~~~~Lk~lIe~~~~~~--g~~kV~LVGHSMGGlva~ 177 (440)
T PLN02733 109 YFH--DMIEQLIKWGYKE-GKTLFG---FGYDFRQSN---RLPETMDGLKKKLETVYKAS--GGKKVNIISHSMGGLLVK 177 (440)
T ss_pred HHH--HHHHHHHHcCCcc-CCCccc---CCCCccccc---cHHHHHHHHHHHHHHHHHHc--CCCCEEEEEECHhHHHHH
Confidence 455 6677888999987 678887 556777642 11234567777777665542 236899999999999999
Q ss_pred HHHHhCCCee----eEEEecCC
Q 044808 568 AVLNMRPELF----KVAVADVP 585 (623)
Q Consensus 568 ~~~~~~p~~f----~a~v~~~~ 585 (623)
..+..+|+.+ +..|+.++
T Consensus 178 ~fl~~~p~~~~k~I~~~I~la~ 199 (440)
T PLN02733 178 CFMSLHSDVFEKYVNSWIAIAA 199 (440)
T ss_pred HHHHHCCHhHHhHhccEEEECC
Confidence 8888888743 55555443
No 276
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=95.26 E-value=0.14 Score=55.93 Aligned_cols=101 Identities=15% Similarity=0.290 Sum_probs=62.0
Q ss_pred cEEEeeeEECCCCCEEEEEEeCc-----eEEEEECCCCCccccccCc----cceeEEecCCeEEEEEeCCCCCC-eEEEE
Q 044808 149 NYRITAFKVSPNNKLVAFRENCG-----TVCVIDSETGAPAEKPIQG----CLEFEWAGDEAFLYTRRNAIAEP-QVWFH 218 (623)
Q Consensus 149 ~~~l~~~~~SPDG~~lA~~~~~~-----~l~v~dl~tg~~~~~~i~~----~~~~~WspDg~l~y~~~d~~~~~-~v~~~ 218 (623)
.+.+..+.+||+|++||-+.... .|++|+.++=.... .|.. +..++|||||+++.+...+ |. .||-
T Consensus 525 GyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~-~L~~HsLTVT~l~FSpdg~~LLsvsRD--Rt~sl~~- 600 (764)
T KOG1063|consen 525 GYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ-ELEGHSLTVTRLAFSPDGRYLLSVSRD--RTVSLYE- 600 (764)
T ss_pred ceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh-eecccceEEEEEEECCCCcEEEEeecC--ceEEeee-
Confidence 35788899999999999985443 89999987755443 2332 2249999999655554322 33 4443
Q ss_pred ECCCCCcccEEEEe--ecCCceeEEEEEcCCCcEEEEEee
Q 044808 219 KLGEEQSKDTCLYR--TREDLFDLTLEASESKKFLFVKSK 256 (623)
Q Consensus 219 ~lgt~~~~d~lv~~--~~~~~~~~~~~~S~Dg~~l~i~s~ 256 (623)
..... .+..-|. ..+.+...+++|+||+++ |++++
T Consensus 601 -~~~~~-~~e~~fa~~k~HtRIIWdcsW~pde~~-FaTaS 637 (764)
T KOG1063|consen 601 -VQEDI-KDEFRFACLKAHTRIIWDCSWSPDEKY-FATAS 637 (764)
T ss_pred -eeccc-chhhhhccccccceEEEEcccCcccce-eEEec
Confidence 33221 1111122 233445567889999998 44443
No 277
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=95.20 E-value=1.8 Score=42.31 Aligned_cols=118 Identities=10% Similarity=0.025 Sum_probs=76.0
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccc-c-CccceeEEecCC-eEEEEEeCCCCCC-eEEEEECCCCC--
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKP-I-QGCLEFEWAGDE-AFLYTRRNAIAEP-QVWFHKLGEEQ-- 224 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~-i-~~~~~~~WspDg-~l~y~~~d~~~~~-~v~~~~lgt~~-- 224 (623)
++-...++.|.++|.-++...++.+||+++|+.+..- . ..++.+.|+.+| .++++..+.-+.+ .|.+.++....
T Consensus 54 avW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~ 133 (327)
T KOG0643|consen 54 AVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSD 133 (327)
T ss_pred eEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhh
Confidence 5666788899998888876668999999999987631 1 123468899999 5556554444455 66666665332
Q ss_pred --c-ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC
Q 044808 225 --S-KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE 272 (623)
Q Consensus 225 --~-~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~ 272 (623)
+ +..+...-++. -...+-|+|-+++|+... ....|-..|+.++.
T Consensus 134 ~~s~ep~~kI~t~~s-kit~a~Wg~l~~~ii~Gh---e~G~is~~da~~g~ 180 (327)
T KOG0643|consen 134 IDSEEPYLKIPTPDS-KITSALWGPLGETIIAGH---EDGSISIYDARTGK 180 (327)
T ss_pred hcccCceEEecCCcc-ceeeeeecccCCEEEEec---CCCcEEEEEcccCc
Confidence 1 12333332222 123456899999987532 33467777888775
No 278
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=95.18 E-value=0.35 Score=53.59 Aligned_cols=138 Identities=12% Similarity=0.120 Sum_probs=86.9
Q ss_pred EEEeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc---ccCccceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcc
Q 044808 150 YRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK---PIQGCLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSK 226 (623)
Q Consensus 150 ~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~---~i~~~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~ 226 (623)
+.+..++|+|-|=|.|-+....+-++|....-+++.. .+.++..+.|-|++....+-.. .+ .|..|++-++..
T Consensus 494 ~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSs--D~-tVRlWDv~~G~~- 569 (707)
T KOG0263|consen 494 APVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSS--DR-TVRLWDVSTGNS- 569 (707)
T ss_pred cceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCC--Cc-eEEEEEcCCCcE-
Confidence 3456688999998888886555667777666555532 2233344889999843333221 11 477788877753
Q ss_pred cEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeE--EEEeeCCEEEE
Q 044808 227 DTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDM--FVSHRGNQFFI 297 (623)
Q Consensus 227 d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~--~~~~dg~~ly~ 297 (623)
+.+|... -.-...+.+||+|+||+-. .....|-+.|+.++.....+..+ .+..+ .|+.+|+.|..
T Consensus 570 -VRiF~GH-~~~V~al~~Sp~Gr~LaSg---~ed~~I~iWDl~~~~~v~~l~~H-t~ti~SlsFS~dg~vLas 636 (707)
T KOG0263|consen 570 -VRIFTGH-KGPVTALAFSPCGRYLASG---DEDGLIKIWDLANGSLVKQLKGH-TGTIYSLSFSRDGNVLAS 636 (707)
T ss_pred -EEEecCC-CCceEEEEEcCCCceEeec---ccCCcEEEEEcCCCcchhhhhcc-cCceeEEEEecCCCEEEe
Confidence 6677642 2234567899999998632 23457888899887622233334 44444 57888887666
No 279
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=95.18 E-value=0.13 Score=56.17 Aligned_cols=133 Identities=23% Similarity=0.217 Sum_probs=94.4
Q ss_pred eEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEecc--CC-----CcCChhHHHccc
Q 044808 453 EIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVR--GG-----DEKGKQWHENGK 525 (623)
Q Consensus 453 ~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~R--G~-----~~~G~~~~~~~~ 525 (623)
.|..-+..|.+. ++ -.+..+-||+.......-.. .....-+.+||+++.-|-- |+ ..+|.++.. .
T Consensus 16 ~i~fev~LP~~W---Ng--R~~~~GgGG~~G~i~~~~~~-~~~~~~~~~G~A~~~TD~Gh~~~~~~~~~~~~~n~~~--~ 87 (474)
T PF07519_consen 16 NIRFEVWLPDNW---NG--RFLQVGGGGFAGGINYADGK-ASMATALARGYATASTDSGHQGSAGSDDASFGNNPEA--L 87 (474)
T ss_pred eEEEEEECChhh---cc--CeEEECCCeeeCcccccccc-cccchhhhcCeEEEEecCCCCCCcccccccccCCHHH--H
Confidence 676666777765 34 35666667776554432210 1134567899999998732 11 122322221 3
Q ss_pred ccCCCchHhHHHHHHHHHHHcCC-CCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchhhhh
Q 044808 526 LLNKRNTFTDFIACADYLIKSNY-CSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVLTTI 593 (623)
Q Consensus 526 ~~~~~~~~~D~~~~~~~l~~~~~-~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~ 593 (623)
.+++...+.+...+++.|++.-| ..|++-.-.|.|-||-..+.++.++|+.|-.+|+.+|..++...+
T Consensus 88 ~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP~dfDGIlAgaPA~~~~~~~ 156 (474)
T PF07519_consen 88 LDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYPEDFDGILAGAPAINWTHLQ 156 (474)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhChhhcCeEEeCCchHHHHHHH
Confidence 45667788888999999998755 568999999999999999999999999999999999999986543
No 280
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.03 E-value=0.21 Score=50.73 Aligned_cols=90 Identities=21% Similarity=0.286 Sum_probs=61.8
Q ss_pred CCceEEeechhhcccCC--CCcEEEeeeEECCCCCEEEEEEeCc-eEEEEECCCCCccccccC-----ccceeEEecCCe
Q 044808 130 PPEEVIIDEEVIKYKNS--LENYRITAFKVSPNNKLVAFRENCG-TVCVIDSETGAPAEKPIQ-----GCLEFEWAGDEA 201 (623)
Q Consensus 130 ~~~~vllD~n~~a~~~~--~~~~~l~~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~~~i~-----~~~~~~WspDg~ 201 (623)
.++.+|+|...+..... .-.-.+..+++||||.+||-+++.+ -|+|+.+.+|+.+.+--. .+.+++|+||+.
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~ 231 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ 231 (391)
T ss_pred CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC
Confidence 35678899887764210 0122577899999999999999999 899999999987653222 234699999997
Q ss_pred EEEEEeCCCCCCeEEEEECCC
Q 044808 202 FLYTRRNAIAEPQVWFHKLGE 222 (623)
Q Consensus 202 l~y~~~d~~~~~~v~~~~lgt 222 (623)
|+-...+. . .|...+|++
T Consensus 232 ~L~~sS~T--e-TVHiFKL~~ 249 (391)
T KOG2110|consen 232 FLAASSNT--E-TVHIFKLEK 249 (391)
T ss_pred eEEEecCC--C-eEEEEEecc
Confidence 55444321 1 355555554
No 281
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=95.00 E-value=0.6 Score=49.22 Aligned_cols=111 Identities=16% Similarity=0.248 Sum_probs=78.2
Q ss_pred EEeeeEECCCCCEEEEEE-eCceEEEEECCCCCcccc--ccC--ccceeEEecCC-eEEEEEeCCCCCC-eEEEEECCCC
Q 044808 151 RITAFKVSPNNKLVAFRE-NCGTVCVIDSETGAPAEK--PIQ--GCLEFEWAGDE-AFLYTRRNAIAEP-QVWFHKLGEE 223 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~-~~~~l~v~dl~tg~~~~~--~i~--~~~~~~WspDg-~l~y~~~d~~~~~-~v~~~~lgt~ 223 (623)
++.-+++||--|+|.-.. |.+.+.+||+.+..+.-. ... .+.+++|+|-+ .|+.+. +.. +|+.++++..
T Consensus 166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsV----G~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSV----GYDKKINIYDIRSQ 241 (673)
T ss_pred eEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEe----cccceEEEeecccc
Confidence 344678999999866654 445999999987654321 112 34579999998 555443 223 7999999987
Q ss_pred CcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC
Q 044808 224 QSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE 272 (623)
Q Consensus 224 ~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~ 272 (623)
...+.++|+.+ +..++++++|-+|++... ..+|+..|+....
T Consensus 242 ~s~~~l~y~~P----lstvaf~~~G~~L~aG~s---~G~~i~YD~R~~k 283 (673)
T KOG4378|consen 242 ASTDRLTYSHP----LSTVAFSECGTYLCAGNS---KGELIAYDMRSTK 283 (673)
T ss_pred cccceeeecCC----cceeeecCCceEEEeecC---CceEEEEecccCC
Confidence 77778888753 345789999999887543 2478889987654
No 282
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=94.96 E-value=0.094 Score=56.53 Aligned_cols=112 Identities=12% Similarity=0.142 Sum_probs=67.5
Q ss_pred EEeeeEECCCCC-EEEEEEeCceEEEEECCCCCccc---cccCccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCc
Q 044808 151 RITAFKVSPNNK-LVAFRENCGTVCVIDSETGAPAE---KPIQGCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 151 ~l~~~~~SPDG~-~lA~~~~~~~l~v~dl~tg~~~~---~~i~~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~ 225 (623)
.|..++|.|=.. .||.++...+|.+||+++++..- ...+.+.+++||||| +++-+..|. +|+.|+..+.+
T Consensus 679 KI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg----~~rVy~Prs~e- 753 (1012)
T KOG1445|consen 679 KITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDG----TLRVYEPRSRE- 753 (1012)
T ss_pred eEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCc----eEEEeCCCCCC-
Confidence 455667777432 34444444499999999987543 223455679999999 566655443 46677765542
Q ss_pred ccEEEEeecCC--ceeEEEEEcCCCcEEEEEeecce-eeEEEEEECC
Q 044808 226 KDTCLYRTRED--LFDLTLEASESKKFLFVKSKTKV-TGFVYYFDVS 269 (623)
Q Consensus 226 ~d~lv~~~~~~--~~~~~~~~S~Dg~~l~i~s~~~~-~s~l~~~dl~ 269 (623)
.-|++.+.+ ..-..+.|.=||++|++.-.++. ...|-+.+.+
T Consensus 754 --~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 754 --QPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred --CccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence 346665432 23345678889999887643332 1234444443
No 283
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.88 E-value=5.9 Score=41.95 Aligned_cols=223 Identities=10% Similarity=0.053 Sum_probs=113.2
Q ss_pred EeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccC----ccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCcc
Q 044808 152 ITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQ----GCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQSK 226 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~----~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~~ 226 (623)
+.+..|=.||+++|.+-..+.+.|+|..+..++. .+. .+....|+|++ +++.+..|+. .+.++++.+..
T Consensus 71 v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR-~~~ah~apv~~~~f~~~d~t~l~s~sDd~---v~k~~d~s~a~-- 144 (487)
T KOG0310|consen 71 VYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR-QLYAHQAPVHVTKFSPQDNTMLVSGSDDK---VVKYWDLSTAY-- 144 (487)
T ss_pred eeEEEeecCCeEEEccCCcCcEEEeccccHHHHH-HHhhccCceeEEEecccCCeEEEecCCCc---eEEEEEcCCcE--
Confidence 4567888999999999887799999976644443 121 12237889988 6666655442 35556776652
Q ss_pred cEEEEee-cCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeEE-EEeeCCEEEEEeCCCCC
Q 044808 227 DTCLYRT-REDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDMF-VSHRGNQFFIRRSDGGF 304 (623)
Q Consensus 227 d~lv~~~-~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~~-~~~dg~~ly~sn~~g~~ 304 (623)
+ .++. .+.+|.-..+++|-..+|+++-+-.+ .|.+.|+.....+..-......++.. +-|.|. +++|-. .+
T Consensus 145 -v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg--~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs-~iasAg--Gn 217 (487)
T KOG0310|consen 145 -V-QAELSGHTDYVRCGDISPANDHIVVTGSYDG--KVRLWDTRSLTSRVVELNHGCPVESVLALPSGS-LIASAG--GN 217 (487)
T ss_pred -E-EEEecCCcceeEeeccccCCCeEEEecCCCc--eEEEEEeccCCceeEEecCCCceeeEEEcCCCC-EEEEcC--CC
Confidence 2 3332 33446556678999898887433222 34444443321121111222222222 123333 333222 22
Q ss_pred CeEEEEEeCCCCCceee-EEcCCCCceEeEEEEeC-CEEEEEEeeCCcceEEEEECCCCCCCcccccCCceeecCCCceE
Q 044808 305 HSDVLTCPVDNTFETTV-LIPHRERVRVEEVRLFA-DHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELC 382 (623)
Q Consensus 305 ~~~L~~~d~~~~~~~~~-li~~~~d~~i~~~~~~~-~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~ 382 (623)
+.++ +|+.++..... ...|.. .+..+.+.. +.-+++..-++. +.+|+.+. -+. .....+|.+.-.
T Consensus 218 ~vkV--WDl~~G~qll~~~~~H~K--tVTcL~l~s~~~rLlS~sLD~~--VKVfd~t~-~Kv------v~s~~~~~pvLs 284 (487)
T KOG0310|consen 218 SVKV--WDLTTGGQLLTSMFNHNK--TVTCLRLASDSTRLLSGSLDRH--VKVFDTTN-YKV------VHSWKYPGPVLS 284 (487)
T ss_pred eEEE--EEecCCceehhhhhcccc--eEEEEEeecCCceEeecccccc--eEEEEccc-eEE------EEeeecccceee
Confidence 3444 56654432111 222333 344555443 233334434443 66666542 121 234567765433
Q ss_pred EEeeeccccCCcCCceEEEEeecCC
Q 044808 383 ISRIHGIRDSQFSSSILRICFYTMR 407 (623)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~ss~~ 407 (623)
+ ..++++.++++..++-.
T Consensus 285 i-------avs~dd~t~viGmsnGl 302 (487)
T KOG0310|consen 285 I-------AVSPDDQTVVIGMSNGL 302 (487)
T ss_pred E-------EecCCCceEEEecccce
Confidence 2 33456777777665543
No 284
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=94.79 E-value=1.8 Score=43.13 Aligned_cols=110 Identities=18% Similarity=0.282 Sum_probs=65.0
Q ss_pred eeeEECCCCCEEEEEEeCceEEEEECCC------------CCccc---------cccCccceeEEecCCeEEEEEeCCCC
Q 044808 153 TAFKVSPNNKLVAFRENCGTVCVIDSET------------GAPAE---------KPIQGCLEFEWAGDEAFLYTRRNAIA 211 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~~~l~v~dl~t------------g~~~~---------~~i~~~~~~~WspDg~l~y~~~d~~~ 211 (623)
...++||||.++|-+.....|.|+|++- |..-+ +..+.+..+.|-|-..++.....+.
T Consensus 116 R~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~- 194 (430)
T KOG0640|consen 116 RAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDN- 194 (430)
T ss_pred eeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCC-
Confidence 3468999999999987665899999872 11111 1112233478888776665543221
Q ss_pred CCeEEEEECCCCCcc-cEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCC
Q 044808 212 EPQVWFHKLGEEQSK-DTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSR 270 (623)
Q Consensus 212 ~~~v~~~~lgt~~~~-d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~ 270 (623)
.|.+.+......+ .-.+|++..+ ...+++.|.|.+|++.... . .+.+.|+.+
T Consensus 195 --tvKlFDfsK~saKrA~K~~qd~~~--vrsiSfHPsGefllvgTdH-p--~~rlYdv~T 247 (430)
T KOG0640|consen 195 --TVKLFDFSKTSAKRAFKVFQDTEP--VRSISFHPSGEFLLVGTDH-P--TLRLYDVNT 247 (430)
T ss_pred --eEEEEecccHHHHHHHHHhhccce--eeeEeecCCCceEEEecCC-C--ceeEEeccc
Confidence 4556666543322 2235554433 3457889999999885532 2 344455554
No 285
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=94.77 E-value=5.2 Score=43.14 Aligned_cols=227 Identities=13% Similarity=0.035 Sum_probs=125.7
Q ss_pred eeEECCCCCEEEEEEeCceEEEEECCCCCcccccc--CccceeEEecCC---eEEEEEeCCCCCC-eEEEEECCCCCccc
Q 044808 154 AFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPI--QGCLEFEWAGDE---AFLYTRRNAIAEP-QVWFHKLGEEQSKD 227 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i--~~~~~~~WspDg---~l~y~~~d~~~~~-~v~~~~lgt~~~~d 227 (623)
.++||+|-.+.|..+.. .++++++.+-+.....| .++..++.||-+ .+++-.-...+.| .|..+....... .
T Consensus 130 ~~qfs~dEsl~arlv~n-ev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~-~ 207 (566)
T KOG2315|consen 130 VPQFSIDESLAARLVSN-EVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQ-H 207 (566)
T ss_pred ccccccchhhhhhhhcc-eEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccc-c
Confidence 47899999999988876 69999988754433333 344458999885 2332222333456 566665542111 1
Q ss_pred EEEEeecCCce----eEEEEEcCCCcEEEEEeec---c------eeeEEEEEECCCCCceeecCCCccceeEEEEeeCCE
Q 044808 228 TCLYRTREDLF----DLTLEASESKKFLFVKSKT---K------VTGFVYYFDVSRPETLWFLPPWHLGIDMFVSHRGNQ 294 (623)
Q Consensus 228 ~lv~~~~~~~~----~~~~~~S~Dg~~l~i~s~~---~------~~s~l~~~dl~~~~~~~~l~~~~~~~~~~~~~dg~~ 294 (623)
..+-. -.| .+...|.+-|.-|++.... + +.+.||+++.++......+.+...-..+.|++.+..
T Consensus 208 ~~~a~---ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~E 284 (566)
T KOG2315|consen 208 QPVAN---KSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGRE 284 (566)
T ss_pred chhhh---ccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCE
Confidence 11111 112 2456788888766665432 1 246899999884321222222221223468899988
Q ss_pred EEE-EeCCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCCCcccccCCce
Q 044808 295 FFI-RRSDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRT 373 (623)
Q Consensus 295 ly~-sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~ 373 (623)
|.+ -.-- -.++-..|+...- .-.+++.+.-.+ -+.++++.|++..-.+-...+.++|... -+ .
T Consensus 285 F~VvyGfM---PAkvtifnlr~~~--v~df~egpRN~~-~fnp~g~ii~lAGFGNL~G~mEvwDv~n-~K---------~ 348 (566)
T KOG2315|consen 285 FAVVYGFM---PAKVTIFNLRGKP--VFDFPEGPRNTA-FFNPHGNIILLAGFGNLPGDMEVWDVPN-RK---------L 348 (566)
T ss_pred EEEEEecc---cceEEEEcCCCCE--eEeCCCCCccce-EECCCCCEEEEeecCCCCCceEEEeccc-hh---------h
Confidence 877 5432 1345555654321 113445443222 4666778888888777777888998874 22 1
Q ss_pred eecCCCceEEEeeeccccCCcCCceEEEEeecC
Q 044808 374 VDIFKSELCISRIHGIRDSQFSSSILRICFYTM 406 (623)
Q Consensus 374 i~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ss~ 406 (623)
|.-.....+ ..+.+++|+..++...+++
T Consensus 349 i~~~~a~~t-----t~~eW~PdGe~flTATTaP 376 (566)
T KOG2315|consen 349 IAKFKAANT-----TVFEWSPDGEYFLTATTAP 376 (566)
T ss_pred ccccccCCc-----eEEEEcCCCcEEEEEeccc
Confidence 221111111 1245678888776655443
No 286
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=94.73 E-value=0.25 Score=54.13 Aligned_cols=131 Identities=10% Similarity=0.092 Sum_probs=74.5
Q ss_pred CceEEeechhhcccCCC--CcEEEeeeEECCCCCEEEEEEeCc--eEEEEECCCCCccccccC---ccceeEEecCCeEE
Q 044808 131 PEEVIIDEEVIKYKNSL--ENYRITAFKVSPNNKLVAFRENCG--TVCVIDSETGAPAEKPIQ---GCLEFEWAGDEAFL 203 (623)
Q Consensus 131 ~~~vllD~n~~a~~~~~--~~~~l~~~~~SPDG~~lA~~~~~~--~l~v~dl~tg~~~~~~i~---~~~~~~WspDg~l~ 203 (623)
--.||||+..-...|-+ .-..+..++|||||||+|-+.... .++||+++.-..+.+-.+ ++..++|+|-++++
T Consensus 58 CvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyv 137 (1080)
T KOG1408|consen 58 CVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYV 137 (1080)
T ss_pred cEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEE
Confidence 45677777654432210 112567899999999999998655 899999998776654333 23349999998655
Q ss_pred EEEeCCCCCC--eEEEEECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCC
Q 044808 204 YTRRNAIAEP--QVWFHKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSR 270 (623)
Q Consensus 204 y~~~d~~~~~--~v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~ 270 (623)
.... ..+.. .+|-++.....+ ...| ......+++|.||.|.+ ++.+. .-.+|+++...
T Consensus 138 vSVG-sQHDMIVnv~dWr~N~~~a-snki-----ss~Vsav~fsEdgSYfv-T~gnr-Hvk~wyl~~~~ 197 (1080)
T KOG1408|consen 138 VSVG-SQHDMIVNVNDWRVNSSGA-SNKI-----SSVVSAVAFSEDGSYFV-TSGNR-HVKLWYLQIQS 197 (1080)
T ss_pred Eeec-cccceEEEhhhhhhccccc-cccc-----ceeEEEEEEccCCceee-eeeee-eEEEEEeeccc
Confidence 4332 11221 344333222111 1111 11233467899999854 33221 23566666544
No 287
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.35 Score=45.60 Aligned_cols=121 Identities=17% Similarity=0.185 Sum_probs=68.8
Q ss_pred EEEEeCCCccCCCCccEEEEEcCCCCC---CC------CCCCCc---hhhhHHHHHCCcEEEEEeccCCCcCChhHHHcc
Q 044808 457 SIVYRKNRVKLDGSDPLLLFGYGSYGL---GP------SSYSNS---IASRLTILDRGIIFAIAHVRGGDEKGKQWHENG 524 (623)
Q Consensus 457 ~l~~~~~~~~~~~~~P~il~~~Gg~~~---~~------~~~~~~---~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~ 524 (623)
+|+.-++. ...+..++|.+||+--. ++ ...... .+....-++.||-|++.|.- .-+.|++.-
T Consensus 89 FiF~s~~~--lt~~~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N----~~~kfye~k 162 (297)
T KOG3967|consen 89 FIFMSEDA--LTNPQKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPN----RERKFYEKK 162 (297)
T ss_pred eEEEChhH--hcCccceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCc----hhhhhhhcc
Confidence 34444443 23456689999996211 11 111110 01223345568888888865 334566543
Q ss_pred cccCC--CchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC---eeeEEEecCC
Q 044808 525 KLLNK--RNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPE---LFKVAVADVP 585 (623)
Q Consensus 525 ~~~~~--~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~---~f~a~v~~~~ 585 (623)
+...+ ..+++-+.-.-.+++. ...+.-+++.-+||||++++-++-+.|+ .|+-+....+
T Consensus 163 ~np~kyirt~veh~~yvw~~~v~--pa~~~sv~vvahsyGG~~t~~l~~~f~~d~~v~aialTDs~ 226 (297)
T KOG3967|consen 163 RNPQKYIRTPVEHAKYVWKNIVL--PAKAESVFVVAHSYGGSLTLDLVERFPDDESVFAIALTDSA 226 (297)
T ss_pred cCcchhccchHHHHHHHHHHHhc--ccCcceEEEEEeccCChhHHHHHHhcCCccceEEEEeeccc
Confidence 22221 1233333333333443 2567899999999999999999999886 4555555544
No 288
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=94.72 E-value=0.059 Score=36.47 Aligned_cols=19 Identities=26% Similarity=0.329 Sum_probs=15.5
Q ss_pred eeeEECCCCCEEEEEEeCc
Q 044808 153 TAFKVSPNNKLVAFRENCG 171 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~~ 171 (623)
..+.|||||++|+|+.+..
T Consensus 12 ~~p~~SpDGk~i~f~s~~~ 30 (39)
T PF07676_consen 12 GSPAWSPDGKYIYFTSNRN 30 (39)
T ss_dssp EEEEE-TTSSEEEEEEECT
T ss_pred cCEEEecCCCEEEEEecCC
Confidence 4689999999999998763
No 289
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=94.71 E-value=0.13 Score=53.24 Aligned_cols=89 Identities=22% Similarity=0.250 Sum_probs=64.9
Q ss_pred CCcEEEEEeccCCCc---CChhHHHcccc---cCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC
Q 044808 501 RGIIFAIAHVRGGDE---KGKQWHENGKL---LNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRP 574 (623)
Q Consensus 501 ~G~~v~~~~~RG~~~---~G~~~~~~~~~---~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p 574 (623)
.+-.++.+..|==|+ ||.+=+..... ..-+..+.|+...+..|.........-|.++||||||.|++|.=..+|
T Consensus 110 ~~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYP 189 (492)
T KOG2183|consen 110 LKALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYP 189 (492)
T ss_pred hCceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcCh
Confidence 488889999885333 66552222111 122457899999999999887777789999999999999999999999
Q ss_pred CeeeEE-EecCCccch
Q 044808 575 ELFKVA-VADVPSVDV 589 (623)
Q Consensus 575 ~~f~a~-v~~~~~~d~ 589 (623)
.+...| .+.+|++-+
T Consensus 190 Hiv~GAlAaSAPvl~f 205 (492)
T KOG2183|consen 190 HIVLGALAASAPVLYF 205 (492)
T ss_pred hhhhhhhhccCceEee
Confidence 976544 445676544
No 290
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=94.71 E-value=0.09 Score=56.40 Aligned_cols=85 Identities=15% Similarity=0.140 Sum_probs=66.3
Q ss_pred CccEEEEEcCC-CCCCCCCCCCchhhhHHHHHC-CcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHc-
Q 044808 470 SDPLLLFGYGS-YGLGPSSYSNSIASRLTILDR-GIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKS- 546 (623)
Q Consensus 470 ~~P~il~~~Gg-~~~~~~~~~~~~~~~~~~~~~-G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~- 546 (623)
..-+|++.||| |-.+...+.. .....|+.. |.-++.+||--..| ...+...+.+.-|--|++++
T Consensus 395 S~sli~HcHGGGfVAqsSkSHE--~YLr~Wa~aL~cPiiSVdYSLAPE-----------aPFPRaleEv~fAYcW~inn~ 461 (880)
T KOG4388|consen 395 SRSLIVHCHGGGFVAQSSKSHE--PYLRSWAQALGCPIISVDYSLAPE-----------APFPRALEEVFFAYCWAINNC 461 (880)
T ss_pred CceEEEEecCCceeeecccccc--HHHHHHHHHhCCCeEEeeeccCCC-----------CCCCcHHHHHHHHHHHHhcCH
Confidence 34588999998 6666666777 666777774 99999999876554 34567788899999999985
Q ss_pred ---CCCCCCcEEEEEeChHHHHHHH
Q 044808 547 ---NYCSEDNLCIEGGSAGGMLIGA 568 (623)
Q Consensus 547 ---~~~d~~ri~i~G~S~GG~l~~~ 568 (623)
|++ .+||++.|.|+||.|..-
T Consensus 462 allG~T-gEriv~aGDSAGgNL~~~ 485 (880)
T KOG4388|consen 462 ALLGST-GERIVLAGDSAGGNLCFT 485 (880)
T ss_pred HHhCcc-cceEEEeccCCCcceeeh
Confidence 555 599999999999997543
No 291
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=94.70 E-value=2.3 Score=47.20 Aligned_cols=189 Identities=10% Similarity=0.136 Sum_probs=106.3
Q ss_pred cEEEeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc--ccCccceeEEecC-----CeEEEEEeCCCCCCeEEEEECC
Q 044808 149 NYRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK--PIQGCLEFEWAGD-----EAFLYTRRNAIAEPQVWFHKLG 221 (623)
Q Consensus 149 ~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~--~i~~~~~~~WspD-----g~l~y~~~d~~~~~~v~~~~lg 221 (623)
+-.+.++.+++|+.-+.++.....+.|||+.+-+.+.. ..+...+....++ |..+++..++. .+..++..
T Consensus 192 ~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g---~~~~~d~e 268 (775)
T KOG0319|consen 192 KSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSG---VVQYWDSE 268 (775)
T ss_pred hhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCc---eEEEEecc
Confidence 44678899999999887776555899999966543321 1122334555555 23666664321 34444444
Q ss_pred CCCcccEEEEee--c-CCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcccee--EEEEeeCCEEE
Q 044808 222 EEQSKDTCLYRT--R-EDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGID--MFVSHRGNQFF 296 (623)
Q Consensus 222 t~~~~d~lv~~~--~-~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~--~~~~~dg~~ly 296 (623)
++. .++.. + .+.+........+++.+++++. .+++++|.++....+.+....+.+. -.+.++.++++
T Consensus 269 s~~----~~~~~~~~~~~e~~~~~~~~~~~~~l~vtae----Qnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~la 340 (775)
T KOG0319|consen 269 SGK----CVYKQRQSDSEEIDHLLAIESMSQLLLVTAE----QNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLA 340 (775)
T ss_pred cch----hhhhhccCCchhhhcceeccccCceEEEEcc----ceEEEEEccccEEehhhcCCchhheeeeecCCccceEE
Confidence 332 12111 1 1222222334556666665432 4677777776541222333333321 14677788999
Q ss_pred E-EeCCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeC-CEEEEEEeeCCcceEEEE
Q 044808 297 I-RRSDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFA-DHIAVYELEEGLPKITTY 356 (623)
Q Consensus 297 ~-sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~-~~Lv~~~~~~g~~~l~v~ 356 (623)
+ ||.. ..++| ++.+... -+++.+.+. +-+++... +-|+++...+-.-.++.+
T Consensus 341 VATNs~---~lr~y--~~~~~~c--~ii~GH~e~-vlSL~~~~~g~llat~sKD~svilWr~ 394 (775)
T KOG0319|consen 341 VATNSP---ELRLY--TLPTSYC--QIIPGHTEA-VLSLDVWSSGDLLATGSKDKSVILWRL 394 (775)
T ss_pred EEeCCC---ceEEE--ecCCCce--EEEeCchhh-eeeeeecccCcEEEEecCCceEEEEEe
Confidence 9 9975 57887 4444322 277777775 44666444 447777777776666666
No 292
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=94.69 E-value=6.4 Score=41.58 Aligned_cols=108 Identities=14% Similarity=0.212 Sum_probs=66.8
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc-ccCccc--eeEEecCCeEEEEEeCCCCCCeEEEEECCCCCccc
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK-PIQGCL--EFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSKD 227 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~-~i~~~~--~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~d 227 (623)
.|-.++|+-+|.+|+-+.-.+++.+||..+|+..+. ++..+- .+.|-.+..|.-...+. .+++.+++... +
T Consensus 278 PI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~----~i~V~kv~~~~--P 351 (524)
T KOG0273|consen 278 PIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDG----CIHVCKVGEDR--P 351 (524)
T ss_pred ceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCc----eEEEEEecCCC--c
Confidence 355679999999998876656899999999987652 333332 38998777776544322 36666666442 2
Q ss_pred EEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEE
Q 044808 228 TCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYF 266 (623)
Q Consensus 228 ~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~ 266 (623)
+..|...+. -...+.|.|.|..|+ +.++..+-.||-+
T Consensus 352 ~~t~~GH~g-~V~alk~n~tg~LLa-S~SdD~TlkiWs~ 388 (524)
T KOG0273|consen 352 VKTFIGHHG-EVNALKWNPTGSLLA-SCSDDGTLKIWSM 388 (524)
T ss_pred ceeeecccC-ceEEEEECCCCceEE-EecCCCeeEeeec
Confidence 333333222 234567888887654 3444455566644
No 293
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=94.67 E-value=0.46 Score=51.48 Aligned_cols=152 Identities=9% Similarity=0.059 Sum_probs=79.6
Q ss_pred EEEeeeEECC-CCCEEEEEEeCceEEEEECCCCCccc-----c-cc----CccceeEEecCC-e-EEEEEeCCCCCCeEE
Q 044808 150 YRITAFKVSP-NNKLVAFRENCGTVCVIDSETGAPAE-----K-PI----QGCLEFEWAGDE-A-FLYTRRNAIAEPQVW 216 (623)
Q Consensus 150 ~~l~~~~~SP-DG~~lA~~~~~~~l~v~dl~tg~~~~-----~-~i----~~~~~~~WspDg-~-l~y~~~d~~~~~~v~ 216 (623)
..+..+.|.| |-.+||.+.+.++|.+|.+.++..-. + .+ +.+.++.|-|=- - ++...+|. .|-
T Consensus 628 t~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~----Ti~ 703 (1012)
T KOG1445|consen 628 TLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDS----TIE 703 (1012)
T ss_pred ceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccc----eee
Confidence 4566788888 77789999988878888776653221 1 11 112235554433 2 22222222 577
Q ss_pred EEECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCc-----cceeEEEEee
Q 044808 217 FHKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWH-----LGIDMFVSHR 291 (623)
Q Consensus 217 ~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~-----~~~~~~~~~d 291 (623)
++++.+... ..-+.. +.+-.++++|||||+.++-...+ ..|++.+...+. ..+..+. .+...-|.-+
T Consensus 704 lWDl~~~~~--~~~l~g-HtdqIf~~AWSpdGr~~AtVcKD---g~~rVy~Prs~e--~pv~Eg~gpvgtRgARi~wacd 775 (1012)
T KOG1445|consen 704 LWDLANAKL--YSRLVG-HTDQIFGIAWSPDGRRIATVCKD---GTLRVYEPRSRE--QPVYEGKGPVGTRGARILWACD 775 (1012)
T ss_pred eeehhhhhh--hheecc-CcCceeEEEECCCCcceeeeecC---ceEEEeCCCCCC--CccccCCCCccCcceeEEEEec
Confidence 778876643 222222 22345678999999997643332 355666655543 2232222 1222345566
Q ss_pred CCEEEEEeCCCCCCeEEEEEeC
Q 044808 292 GNQFFIRRSDGGFHSDVLTCPV 313 (623)
Q Consensus 292 g~~ly~sn~~g~~~~~L~~~d~ 313 (623)
|..++++.-+.....+|..++.
T Consensus 776 gr~viv~Gfdk~SeRQv~~Y~A 797 (1012)
T KOG1445|consen 776 GRIVIVVGFDKSSERQVQMYDA 797 (1012)
T ss_pred CcEEEEecccccchhhhhhhhh
Confidence 6555544433222334544443
No 294
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=94.63 E-value=7.5 Score=41.54 Aligned_cols=194 Identities=13% Similarity=0.172 Sum_probs=103.0
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccc-cccCccceeEEecCCeEEEEEeCCC-----------CCC-eEEE
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAE-KPIQGCLEFEWAGDEAFLYTRRNAI-----------AEP-QVWF 217 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~-~~i~~~~~~~WspDg~l~y~~~d~~-----------~~~-~v~~ 217 (623)
.+...++||.|++|++.-.. .|.+++-..+..+. -..+++..+.+||.+..+.+..++. ..- +++.
T Consensus 34 p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~v 112 (561)
T COG5354 34 PVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFV 112 (561)
T ss_pred chhheeecCcchheehhhcc-ceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCceeE
Confidence 34567999999999988655 46666665554432 2334556688999995555543321 011 5788
Q ss_pred EECCCCCcccEEEEeec---CC--ceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC----ceeecCCCccce-eEE
Q 044808 218 HKLGEEQSKDTCLYRTR---ED--LFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE----TLWFLPPWHLGI-DMF 287 (623)
Q Consensus 218 ~~lgt~~~~d~lv~~~~---~~--~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~----~~~~l~~~~~~~-~~~ 287 (623)
+++.++ .+|+.-. .+ .| --+.||-|.+|++-. .++++++.++ ++. ..+.+ +..++ .+.
T Consensus 113 wd~~sg----~iv~sf~~~~q~~~~W-p~~k~s~~D~y~ARv----v~~sl~i~e~-t~n~~~~p~~~l--r~~gi~dFs 180 (561)
T COG5354 113 WDIASG----MIVFSFNGISQPYLGW-PVLKFSIDDKYVARV----VGSSLYIHEI-TDNIEEHPFKNL--RPVGILDFS 180 (561)
T ss_pred EeccCc----eeEeeccccCCccccc-ceeeeeecchhhhhh----ccCeEEEEec-CCccccCchhhc--cccceeeEE
Confidence 888776 3455422 12 12 124678888876543 2467888886 333 12222 22333 356
Q ss_pred EEeeC--CEEEE-E-eCCCC-CCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeC--------CcceEE
Q 044808 288 VSHRG--NQFFI-R-RSDGG-FHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEE--------GLPKIT 354 (623)
Q Consensus 288 ~~~dg--~~ly~-s-n~~g~-~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~--------g~~~l~ 354 (623)
++|.+ +.|.+ + ...+. ...+|+.++....-..+-++.-+ ++.+ -+..-+++|.+....+ |.+.|+
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~-~~qL-kW~~~g~~ll~l~~t~~ksnKsyfgesnLy 258 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS-GVQL-KWQVLGKYLLVLVMTHTKSNKSYFGESNLY 258 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec-ccEE-EEecCCceEEEEEEEeeecccceeccceEE
Confidence 77653 34444 4 33332 24556666532221111133222 2222 2333466655544332 336788
Q ss_pred EEECC
Q 044808 355 TYCLP 359 (623)
Q Consensus 355 v~~l~ 359 (623)
++++.
T Consensus 259 l~~~~ 263 (561)
T COG5354 259 LLRIT 263 (561)
T ss_pred EEeec
Confidence 88876
No 295
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=94.54 E-value=1.7 Score=44.24 Aligned_cols=193 Identities=10% Similarity=0.071 Sum_probs=107.4
Q ss_pred EEeeeEECCCCCEEEEEEeCc--eEEEEECCCCCcccc---ccCccceeEEecCC-e-EEEEEeCC-----CCCC-eEEE
Q 044808 151 RITAFKVSPNNKLVAFRENCG--TVCVIDSETGAPAEK---PIQGCLEFEWAGDE-A-FLYTRRNA-----IAEP-QVWF 217 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~--~l~v~dl~tg~~~~~---~i~~~~~~~WspDg-~-l~y~~~d~-----~~~~-~v~~ 217 (623)
.+..++|.| ..++|++... .|+++|-.+..+... .-.++..++|-|-+ + |....... ..++ ..-+
T Consensus 100 dlr~~aWhq--H~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r 177 (445)
T KOG2139|consen 100 DLRGVAWHQ--HIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR 177 (445)
T ss_pred ceeeEeech--hhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc
Confidence 366678887 5566655433 788888776333211 12345569999987 4 44433211 0011 1101
Q ss_pred -EECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecC-CCcccee-EEEEeeCCE
Q 044808 218 -HKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLP-PWHLGID-MFVSHRGNQ 294 (623)
Q Consensus 218 -~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~-~~~~~~~-~~~~~dg~~ 294 (623)
.+.++. ....|++.+......+..|.+||..++ ..+.+++.+.+.|.+++. ...+. .+..++. .-|+|||+.
T Consensus 178 ~~~~~s~--~~~qvl~~pgh~pVtsmqwn~dgt~l~--tAS~gsssi~iWdpdtg~-~~pL~~~glgg~slLkwSPdgd~ 252 (445)
T KOG2139|consen 178 NIRMMST--HHLQVLQDPGHNPVTSMQWNEDGTILV--TASFGSSSIMIWDPDTGQ-KIPLIPKGLGGFSLLKWSPDGDV 252 (445)
T ss_pred ccccccc--cchhheeCCCCceeeEEEEcCCCCEEe--ecccCcceEEEEcCCCCC-cccccccCCCceeeEEEcCCCCE
Confidence 011111 123355544333455688999997754 345566788888888876 33343 3334443 369999998
Q ss_pred EEE-EeCCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEe--CCEEEEEEeeCCcceEEEEECC
Q 044808 295 FFI-RRSDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLF--ADHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 295 ly~-sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~--~~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
|+. +-.. -++|+...-. -..++|+.... .++...|. +.+|++... |.+.|+.+..+
T Consensus 253 lfaAt~da---vfrlw~e~q~-wt~erw~lgsg---rvqtacWspcGsfLLf~~s--gsp~lysl~f~ 311 (445)
T KOG2139|consen 253 LFAATCDA---VFRLWQENQS-WTKERWILGSG---RVQTACWSPCGSFLLFACS--GSPRLYSLTFD 311 (445)
T ss_pred EEEecccc---eeeeehhccc-ceecceeccCC---ceeeeeecCCCCEEEEEEc--CCceEEEEeec
Confidence 887 5443 3677743211 12356755444 35555554 566766664 55778877665
No 296
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=94.47 E-value=0.36 Score=48.99 Aligned_cols=172 Identities=14% Similarity=0.092 Sum_probs=99.3
Q ss_pred CceEEeechhhcccC--CCCcEEEeeeEECCCCCEEEEEE-eCceEEEEECCCCCccccccCcc--ceeEEecCCeEEEE
Q 044808 131 PEEVIIDEEVIKYKN--SLENYRITAFKVSPNNKLVAFRE-NCGTVCVIDSETGAPAEKPIQGC--LEFEWAGDEAFLYT 205 (623)
Q Consensus 131 ~~~vllD~n~~a~~~--~~~~~~l~~~~~SPDG~~lA~~~-~~~~l~v~dl~tg~~~~~~i~~~--~~~~WspDg~l~y~ 205 (623)
+.--|+|++-..+-. +-|+-+|..++++|--..|.-+. +...|.++|+.++.++...+-.. ..++|.| ..|-|+
T Consensus 167 e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~ 245 (433)
T KOG0268|consen 167 EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNP-EAFNFV 245 (433)
T ss_pred ceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCc-ccccee
Confidence 334467875433221 12556778889999888654443 33489999999999887544333 3499999 555555
Q ss_pred EeCCCCCCeEEEEECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeec--CCCccc
Q 044808 206 RRNAIAEPQVWFHKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFL--PPWHLG 283 (623)
Q Consensus 206 ~~d~~~~~~v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l--~~~~~~ 283 (623)
..++.. .+|.+++.--. ....++.+ +..-.+++.+||-|+-++-.+ ....|.+.+...+. -+.+ +++-..
T Consensus 246 ~a~ED~--nlY~~DmR~l~-~p~~v~~d-hvsAV~dVdfsptG~Efvsgs---yDksIRIf~~~~~~-SRdiYhtkRMq~ 317 (433)
T KOG0268|consen 246 AANEDH--NLYTYDMRNLS-RPLNVHKD-HVSAVMDVDFSPTGQEFVSGS---YDKSIRIFPVNHGH-SRDIYHTKRMQH 317 (433)
T ss_pred eccccc--cceehhhhhhc-ccchhhcc-cceeEEEeccCCCcchhcccc---ccceEEEeecCCCc-chhhhhHhhhhe
Confidence 544321 58888775432 23345442 222346788999999865322 23456666665554 2222 233333
Q ss_pred eeE-EEEeeCCEEEEEeCCCCCCeEEEEEeC
Q 044808 284 IDM-FVSHRGNQFFIRRSDGGFHSDVLTCPV 313 (623)
Q Consensus 284 ~~~-~~~~dg~~ly~sn~~g~~~~~L~~~d~ 313 (623)
+.. -++.|.. +.+|..+ ..|.+||+...
T Consensus 318 V~~Vk~S~Dsk-yi~SGSd-d~nvRlWka~A 346 (433)
T KOG0268|consen 318 VFCVKYSMDSK-YIISGSD-DGNVRLWKAKA 346 (433)
T ss_pred eeEEEEecccc-EEEecCC-Ccceeeeecch
Confidence 322 4666654 3333333 34789998764
No 297
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=94.47 E-value=1.2 Score=44.66 Aligned_cols=195 Identities=18% Similarity=0.167 Sum_probs=100.2
Q ss_pred EECCCCCEEEEEEeCceEEEEECCCCCccc--------cccCccceeEEecCCeEEEEEeCCCCCC-eEEEE-ECCCCCc
Q 044808 156 KVSPNNKLVAFRENCGTVCVIDSETGAPAE--------KPIQGCLEFEWAGDEAFLYTRRNAIAEP-QVWFH-KLGEEQS 225 (623)
Q Consensus 156 ~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~--------~~i~~~~~~~WspDg~l~y~~~d~~~~~-~v~~~-~lgt~~~ 225 (623)
..-|+-.+.|.++...-|++||.-+|+... +++..+.++.|+|||.-+|.-.. +. +||-. +.|-.-.
T Consensus 118 s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk---rcirvFdt~RpGr~c~ 194 (406)
T KOG2919|consen 118 SDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK---RCIRVFDTSRPGRDCP 194 (406)
T ss_pred cCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc---ceEEEeeccCCCCCCc
Confidence 355778888877766589999999998653 23334446999999943333322 22 33221 2222111
Q ss_pred ccEEEEeecC--CceeEEEEEcCCCc-EEEEEeecceeeEEEEEECCCCCceeecCCCccceeE-EEEeeCCEEEE-EeC
Q 044808 226 KDTCLYRTRE--DLFDLTLEASESKK-FLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDM-FVSHRGNQFFI-RRS 300 (623)
Q Consensus 226 ~d~lv~~~~~--~~~~~~~~~S~Dg~-~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~-~~~~dg~~ly~-sn~ 300 (623)
.-..++..+. .....-+++||-.. .+.+.+-. ..-.||--+-.. .+.++..+..|+.- .|-++|++||. +.+
T Consensus 195 vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~-q~~giy~~~~~~--pl~llggh~gGvThL~~~edGn~lfsGaRk 271 (406)
T KOG2919|consen 195 VYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYG-QRVGIYNDDGRR--PLQLLGGHGGGVTHLQWCEDGNKLFSGARK 271 (406)
T ss_pred chhhhhcccccccceeeeeeccCCCCcceeeeccc-ceeeeEecCCCC--ceeeecccCCCeeeEEeccCcCeecccccC
Confidence 0111222111 11222345676443 44443321 123444333222 35556666667653 68899999999 777
Q ss_pred CCCCCeEEEEEeCCCCCceee-EEcCCC--CceEeEEEEeC-CEEEEEEeeCCcceEEEEECCCCCC
Q 044808 301 DGGFHSDVLTCPVDNTFETTV-LIPHRE--RVRVEEVRLFA-DHIAVYELEEGLPKITTYCLPPVGE 363 (623)
Q Consensus 301 ~g~~~~~L~~~d~~~~~~~~~-li~~~~--d~~i~~~~~~~-~~Lv~~~~~~g~~~l~v~~l~~~g~ 363 (623)
+ -+|...|+......-| |--+.. +..| -+++.. +.++.....+|. |.++++..-|.
T Consensus 272 ~----dkIl~WDiR~~~~pv~~L~rhv~~TNQRI-~FDld~~~~~LasG~tdG~--V~vwdlk~~gn 331 (406)
T KOG2919|consen 272 D----DKILCWDIRYSRDPVYALERHVGDTNQRI-LFDLDPKGEILASGDTDGS--VRVWDLKDLGN 331 (406)
T ss_pred C----CeEEEEeehhccchhhhhhhhccCccceE-EEecCCCCceeeccCCCcc--EEEEecCCCCC
Confidence 6 3688888765432222 211111 1222 233333 344445444554 77778775344
No 298
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.45 E-value=6.4 Score=39.97 Aligned_cols=182 Identities=12% Similarity=0.034 Sum_probs=92.9
Q ss_pred CcEEEeeeEECCCCCEEEEEEeCc-----eEEEEECCCC-CccccccC--ccce--eEEecCC-eEEEEEe-----CCCC
Q 044808 148 ENYRITAFKVSPNNKLVAFRENCG-----TVCVIDSETG-APAEKPIQ--GCLE--FEWAGDE-AFLYTRR-----NAIA 211 (623)
Q Consensus 148 ~~~~l~~~~~SPDG~~lA~~~~~~-----~l~v~dl~tg-~~~~~~i~--~~~~--~~WspDg-~l~y~~~-----d~~~ 211 (623)
+-...+.-.+||||++|.-+.++- .|-|+|++.+ +.+. +++ ++.. +.|.||| +|+..-- .+.+
T Consensus 49 gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~-E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~G 127 (305)
T PF07433_consen 49 GRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIG-EFPSHGIGPHELLLMPDGETLVVANGGIETHPDSG 127 (305)
T ss_pred CCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEe-EecCCCcChhhEEEcCCCCEEEEEcCCCccCcccC
Confidence 445567789999999988776543 8999999833 3332 332 3443 9999999 5554321 1111
Q ss_pred ---------CCeEEEEECCCCCcccEEEEeecCCceeE-EEEEcCCCcEEEEEeeccee----eEEEEEECCCCCceeec
Q 044808 212 ---------EPQVWFHKLGEEQSKDTCLYRTREDLFDL-TLEASESKKFLFVKSKTKVT----GFVYYFDVSRPETLWFL 277 (623)
Q Consensus 212 ---------~~~v~~~~lgt~~~~d~lv~~~~~~~~~~-~~~~S~Dg~~l~i~s~~~~~----s~l~~~dl~~~~~~~~l 277 (623)
.|.|.+.+..++..-++..+...+....+ .+++.+||.-++-....... --|.+.+... .++.+
T Consensus 128 R~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~ 205 (305)
T PF07433_consen 128 RAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLL 205 (305)
T ss_pred ceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceec
Confidence 23455555555532112111111112222 46788998765544432211 1233333322 13222
Q ss_pred CCCccc----eeE----EEEeeCCEEEE-EeCCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCE
Q 044808 278 PPWHLG----IDM----FVSHRGNQFFI-RRSDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADH 340 (623)
Q Consensus 278 ~~~~~~----~~~----~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~ 340 (623)
....+. ..| .++.+++.+.+ +-+. ..+...|.+++.. +....-....++....+.
T Consensus 206 ~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG----g~~~~~d~~tg~~----~~~~~l~D~cGva~~~~~ 269 (305)
T PF07433_consen 206 PAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG----GRVAVWDAATGRL----LGSVPLPDACGVAPTDDG 269 (305)
T ss_pred cCChHHHHhhCCceEEEEEeCCCCEEEEECCCC----CEEEEEECCCCCE----eeccccCceeeeeecCCc
Confidence 211110 023 35567777888 6665 3566667766642 111111124567766666
No 299
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.41 E-value=0.64 Score=50.99 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=59.7
Q ss_pred CCceEEeechhhcccCCCCcEEEeeeEECCCCCEEEEEEeCc-----eEEEEECCCCCccccccCccc--eeEEecCC-e
Q 044808 130 PPEEVIIDEEVIKYKNSLENYRITAFKVSPNNKLVAFRENCG-----TVCVIDSETGAPAEKPIQGCL--EFEWAGDE-A 201 (623)
Q Consensus 130 ~~~~vllD~n~~a~~~~~~~~~l~~~~~SPDG~~lA~~~~~~-----~l~v~dl~tg~~~~~~i~~~~--~~~WspDg-~ 201 (623)
.++++++|+|.+..+ +...+..-++|-|++++||+.+.. .|..+....|+...+.+.+.. .++|.+|+ .
T Consensus 107 ~e~~~~ld~~~~~dd---~tV~Ld~~~~aed~~Y~~~gls~~spD~~~ia~~~~~~~~e~~~~v~~~~~~~~~~~~~~~g 183 (712)
T KOG2237|consen 107 KEEEVFLDPNALGDD---GTVLLDTNQIAEDFKYFAYGLSESSPDHKYIAYTKDTEGKELFTVVIDVKFSGPVWTHDGKG 183 (712)
T ss_pred cccceecCCccCCCC---ceEEechhhhhhcCCceEEeecccCCCceEEEEEEcCCCCccceeeeeeccCCceeeccCCc
Confidence 578999999999877 789999999999999999998744 666677777776665555543 38999988 7
Q ss_pred EEEEEeC
Q 044808 202 FLYTRRN 208 (623)
Q Consensus 202 l~y~~~d 208 (623)
++|.+..
T Consensus 184 ~~y~~w~ 190 (712)
T KOG2237|consen 184 VSYLAWA 190 (712)
T ss_pred eEeeeec
Confidence 7777653
No 300
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.39 E-value=2.8 Score=40.81 Aligned_cols=172 Identities=9% Similarity=0.113 Sum_probs=93.0
Q ss_pred eEEEEECCCCCcccc--cc---CccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCcccEEEEeecCCceeEEEEEc
Q 044808 172 TVCVIDSETGAPAEK--PI---QGCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQSKDTCLYRTREDLFDLTLEAS 245 (623)
Q Consensus 172 ~l~v~dl~tg~~~~~--~i---~~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S 245 (623)
.|+|+++..++-+.+ .. +...+++|++.. ..+++...+ . .+.+++++.+ +.++.+|+|.... ..++.|.
T Consensus 39 ~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GD--G-SLrl~d~~~~-s~Pi~~~kEH~~E-V~Svdwn 113 (311)
T KOG0277|consen 39 RLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGD--G-SLRLFDLTMP-SKPIHKFKEHKRE-VYSVDWN 113 (311)
T ss_pred eEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecC--c-eEEEeccCCC-CcchhHHHhhhhh-eEEeccc
Confidence 899999975544432 12 233469999987 677776532 1 3555565543 3466667654322 3456788
Q ss_pred CCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeE--EEEeeCCEEEE-EeCCCCCCeEEEEEeCCCCCceeeE
Q 044808 246 ESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDM--FVSHRGNQFFI-RRSDGGFHSDVLTCPVDNTFETTVL 322 (623)
Q Consensus 246 ~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~--~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~~~~~l 322 (623)
+-.++.+++++=..+-.||..+..+ .+..+.. .....| .|+|.-.-++. +..++ ..+|+-++. ++.. ..
T Consensus 114 ~~~r~~~ltsSWD~TiKLW~~~r~~--Sv~Tf~g-h~~~Iy~a~~sp~~~nlfas~Sgd~--~l~lwdvr~--~gk~-~~ 185 (311)
T KOG0277|consen 114 TVRRRIFLTSSWDGTIKLWDPNRPN--SVQTFNG-HNSCIYQAAFSPHIPNLFASASGDG--TLRLWDVRS--PGKF-MS 185 (311)
T ss_pred cccceeEEeeccCCceEeecCCCCc--ceEeecC-CccEEEEEecCCCCCCeEEEccCCc--eEEEEEecC--CCce-eE
Confidence 8777777766434445566554433 2333333 233344 36665444555 33331 345555443 3321 23
Q ss_pred EcCCCCceEeEEEE--eCCEEEEEEeeCCcceEEEEECC
Q 044808 323 IPHRERVRVEEVRL--FADHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 323 i~~~~d~~i~~~~~--~~~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
|+.+. ..+...++ +++.++++...++. |+.+|+.
T Consensus 186 i~ah~-~Eil~cdw~ky~~~vl~Tg~vd~~--vr~wDir 221 (311)
T KOG0277|consen 186 IEAHN-SEILCCDWSKYNHNVLATGGVDNL--VRGWDIR 221 (311)
T ss_pred EEecc-ceeEeecccccCCcEEEecCCCce--EEEEehh
Confidence 33332 22333444 46778888777664 6777776
No 301
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.37 E-value=3.4 Score=40.17 Aligned_cols=186 Identities=11% Similarity=0.091 Sum_probs=96.3
Q ss_pred ECCCCCEEEEEEeCceEEEEECCCCCcccc-ccCcc-ceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcccEEE-Eee
Q 044808 157 VSPNNKLVAFRENCGTVCVIDSETGAPAEK-PIQGC-LEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSKDTCL-YRT 233 (623)
Q Consensus 157 ~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~-~i~~~-~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv-~~~ 233 (623)
..+++++|..+...+.|+.+|..+|+.+-. .++.. ....-..++.+|+...+. .|+..+..++.. ..- ...
T Consensus 32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~----~l~~~d~~tG~~--~W~~~~~ 105 (238)
T PF13360_consen 32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDG----SLYALDAKTGKV--LWSIYLT 105 (238)
T ss_dssp EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTS----EEEEEETTTSCE--EEEEEE-
T ss_pred EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccccccccee----eeEecccCCcce--eeeeccc
Confidence 444666655553333999999999987532 22222 121223344666555222 688888877742 112 111
Q ss_pred c--CCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-ceeecCCCccc-e--------eEEEEeeCCEEEEEeCC
Q 044808 234 R--EDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-TLWFLPPWHLG-I--------DMFVSHRGNQFFIRRSD 301 (623)
Q Consensus 234 ~--~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l~~~~~~-~--------~~~~~~dg~~ly~sn~~ 301 (623)
. ............++..+++... ...|+.+|+.+|+ .+..-.....+ . .......++.+|+++.+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~---~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 182 (238)
T PF13360_consen 106 SSPPAGVRSSSSPAVDGDRLYVGTS---SGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGD 182 (238)
T ss_dssp SSCTCSTB--SEEEEETTEEEEEET---CSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCT
T ss_pred cccccccccccCceEecCEEEEEec---cCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCC
Confidence 1 1112222222333666665443 4678999998887 22221222111 1 12222335577774443
Q ss_pred CCCCeEEEEEeCCCCCceeeEEcCCCCceEeE-EEEeCCEEEEEEeeCCcceEEEEECCCCCC
Q 044808 302 GGFHSDVLTCPVDNTFETTVLIPHRERVRVEE-VRLFADHIAVYELEEGLPKITTYCLPPVGE 363 (623)
Q Consensus 302 g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~-~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~ 363 (623)
+ .++.+|+.++.. .|-.+.. . +.. ....++.|++.. .+ ..|+.+++.+ |+
T Consensus 183 g----~~~~~d~~tg~~-~w~~~~~-~--~~~~~~~~~~~l~~~~-~~--~~l~~~d~~t-G~ 233 (238)
T PF13360_consen 183 G----RVVAVDLATGEK-LWSKPIS-G--IYSLPSVDGGTLYVTS-SD--GRLYALDLKT-GK 233 (238)
T ss_dssp S----SEEEEETTTTEE-EEEECSS----ECECEECCCTEEEEEE-TT--TEEEEEETTT-TE
T ss_pred C----eEEEEECCCCCE-EEEecCC-C--ccCCceeeCCEEEEEe-CC--CEEEEEECCC-CC
Confidence 2 267778888753 3633311 1 233 455667777777 44 4588999886 54
No 302
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=94.36 E-value=0.14 Score=57.08 Aligned_cols=66 Identities=15% Similarity=0.269 Sum_probs=49.1
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc-ccC-ccceeEEecCCe-EEEEEeCCCCCCeEEEEE
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK-PIQ-GCLEFEWAGDEA-FLYTRRNAIAEPQVWFHK 219 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~-~i~-~~~~~~WspDg~-l~y~~~d~~~~~~v~~~~ 219 (623)
.|..+.+|||||+|+-+.-+++|++||+.||..+.- .++ .|.++.+||+|. ++-+..+.. .||.+.
T Consensus 578 ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~---gIylWs 646 (910)
T KOG1539|consen 578 RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATVHVDQN---GIYLWS 646 (910)
T ss_pred ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEEEecCc---eEEEEE
Confidence 678899999999999998777999999999997753 223 245699999994 554444433 356554
No 303
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=94.32 E-value=0.71 Score=48.53 Aligned_cols=150 Identities=15% Similarity=0.187 Sum_probs=81.9
Q ss_pred eeeEECCCCCE-EEEEEeCceEEEEECCCCCcccc---ccCccceeEEecCC-eEEEEEeCCCCCC-eEEEEECCCCCcc
Q 044808 153 TAFKVSPNNKL-VAFRENCGTVCVIDSETGAPAEK---PIQGCLEFEWAGDE-AFLYTRRNAIAEP-QVWFHKLGEEQSK 226 (623)
Q Consensus 153 ~~~~~SPDG~~-lA~~~~~~~l~v~dl~tg~~~~~---~i~~~~~~~WspDg-~l~y~~~d~~~~~-~v~~~~lgt~~~~ 226 (623)
..+.+-||+.. +..+...+.|.-||+.+|+++++ .+..+..+.|-++| +|+-++ |+. . .||-..++.+-
T Consensus 303 ~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS-Ddk--s~riWe~~~~v~i-- 377 (503)
T KOG0282|consen 303 TCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS-DDK--SVRIWENRIPVPI-- 377 (503)
T ss_pred eeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec-cCc--cEEEEEcCCCccc--
Confidence 45789999944 33344444899999999998874 33334459999999 555444 432 3 45444443321
Q ss_pred cEEEEeecCCcee-EEEEEcCCCcEEEEEeecceeeEEEEEECCCCC--ceeecCCCc--cc--eeEEEEeeCCEEEEEe
Q 044808 227 DTCLYRTREDLFD-LTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE--TLWFLPPWH--LG--IDMFVSHRGNQFFIRR 299 (623)
Q Consensus 227 d~lv~~~~~~~~~-~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~--~~~~l~~~~--~~--~~~~~~~dg~~ly~sn 299 (623)
..+.. . ..+. -.+..+|.+++++-++. .+.+++..+...- ..+....+. .| +...++|||+.|.--+
T Consensus 378 -k~i~~-~-~~hsmP~~~~~P~~~~~~aQs~---dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd 451 (503)
T KOG0282|consen 378 -KNIAD-P-EMHTMPCLTLHPNGKWFAAQSM---DNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD 451 (503)
T ss_pred -hhhcc-h-hhccCcceecCCCCCeehhhcc---CceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec
Confidence 11111 1 1121 24567899999775443 3455555433211 011111111 11 1235889987555433
Q ss_pred CCCCCCeEEEEEeCCCCC
Q 044808 300 SDGGFHSDVLTCPVDNTF 317 (623)
Q Consensus 300 ~~g~~~~~L~~~d~~~~~ 317 (623)
.+ ++++..|..+..
T Consensus 452 sd----G~v~~wdwkt~k 465 (503)
T KOG0282|consen 452 SD----GKVNFWDWKTTK 465 (503)
T ss_pred CC----ccEEEeechhhh
Confidence 33 578888876543
No 304
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=94.30 E-value=0.19 Score=45.31 Aligned_cols=95 Identities=21% Similarity=0.217 Sum_probs=55.4
Q ss_pred CCCcc-EEEEEcCCCCCCCC-CCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcc-cccCCCchHhHHH-HHHHHH
Q 044808 468 DGSDP-LLLFGYGSYGLGPS-SYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENG-KLLNKRNTFTDFI-ACADYL 543 (623)
Q Consensus 468 ~~~~P-~il~~~Gg~~~~~~-~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~-~~~~~~~~~~D~~-~~~~~l 543 (623)
.++.| +||..||. +.+++ +... .....|+.+|+.|+..++- |=.+=.... +-..+..+.++.. .++--|
T Consensus 10 ag~~~~tilLaHGA-GasmdSt~m~--~~a~~la~~G~~vaRfefp----Yma~Rrtg~rkPp~~~~t~~~~~~~~~aql 82 (213)
T COG3571 10 AGPAPVTILLAHGA-GASMDSTSMT--AVAAALARRGWLVARFEFP----YMAARRTGRRKPPPGSGTLNPEYIVAIAQL 82 (213)
T ss_pred CCCCCEEEEEecCC-CCCCCCHHHH--HHHHHHHhCceeEEEeecc----hhhhccccCCCCcCccccCCHHHHHHHHHH
Confidence 34444 67788996 44444 3333 5567889999999988752 111111111 1122334555543 333344
Q ss_pred HHcCCCCCCcEEEEEeChHHHHHHHHHH
Q 044808 544 IKSNYCSEDNLCIEGGSAGGMLIGAVLN 571 (623)
Q Consensus 544 ~~~~~~d~~ri~i~G~S~GG~l~~~~~~ 571 (623)
.+. .+.+.+.|.|.|+||-++.+++.
T Consensus 83 ~~~--l~~gpLi~GGkSmGGR~aSmvad 108 (213)
T COG3571 83 RAG--LAEGPLIIGGKSMGGRVASMVAD 108 (213)
T ss_pred Hhc--ccCCceeeccccccchHHHHHHH
Confidence 443 24578999999999998876653
No 305
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=94.29 E-value=2.5 Score=43.16 Aligned_cols=142 Identities=9% Similarity=0.011 Sum_probs=81.4
Q ss_pred CCCEEEEEEeCceEEEEECCCCCcccc--cc-Cccce-eEEecCC---eEEEEEeCCCCCC-eEEEEECCCCCcccEEEE
Q 044808 160 NNKLVAFRENCGTVCVIDSETGAPAEK--PI-QGCLE-FEWAGDE---AFLYTRRNAIAEP-QVWFHKLGEEQSKDTCLY 231 (623)
Q Consensus 160 DG~~lA~~~~~~~l~v~dl~tg~~~~~--~i-~~~~~-~~WspDg---~l~y~~~d~~~~~-~v~~~~lgt~~~~d~lv~ 231 (623)
+-++|...... .|||.|+.+.+++.. +. ++-.+ .+.|+.. .++|- ..... +|+++++-+-+ ....+
T Consensus 96 Nr~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp---~s~t~GdV~l~d~~nl~--~v~~I 169 (391)
T KOG2110|consen 96 NRKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYP---GSTTSGDVVLFDTINLQ--PVNTI 169 (391)
T ss_pred ccceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEec---CCCCCceEEEEEcccce--eeeEE
Confidence 34444444443 699999999998752 22 34445 6677665 45554 22234 78888876653 23333
Q ss_pred eecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccce-eE--EEEeeCCEEEE-EeCCCCCCeE
Q 044808 232 RTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGI-DM--FVSHRGNQFFI-RRSDGGFHSD 307 (623)
Q Consensus 232 ~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~-~~--~~~~dg~~ly~-sn~~g~~~~~ 307 (623)
+ .+..-..-+++++||..|+- + +..+.-|.+....+|+.+..+.....-+ .| .|++++..|.. ++.+ ..+
T Consensus 170 ~-aH~~~lAalafs~~G~llAT-A-SeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~Te---TVH 243 (391)
T KOG2110|consen 170 N-AHKGPLAALAFSPDGTLLAT-A-SEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTE---TVH 243 (391)
T ss_pred E-ecCCceeEEEECCCCCEEEE-e-ccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCC---eEE
Confidence 3 22223455789999998763 3 3334567777777776222222221111 23 46787776666 5544 577
Q ss_pred EEEEeC
Q 044808 308 VLTCPV 313 (623)
Q Consensus 308 L~~~d~ 313 (623)
|++++.
T Consensus 244 iFKL~~ 249 (391)
T KOG2110|consen 244 IFKLEK 249 (391)
T ss_pred EEEecc
Confidence 888764
No 306
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=94.27 E-value=2 Score=48.08 Aligned_cols=187 Identities=9% Similarity=0.048 Sum_probs=101.9
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCc---cceeEEecCC-eEEEE-EeCCCCCCeEEEEECCCCCc
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQG---CLEFEWAGDE-AFLYT-RRNAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~---~~~~~WspDg-~l~y~-~~d~~~~~~v~~~~lgt~~~ 225 (623)
.|=.+.||-++-+|.-+.|. ++++|++...+=|. .+.. +..++|.|-+ ++|.. ..|. ++.++.|-..
T Consensus 371 DILDlSWSKn~fLLSSSMDK-TVRLWh~~~~~CL~-~F~HndfVTcVaFnPvDDryFiSGSLD~----KvRiWsI~d~-- 442 (712)
T KOG0283|consen 371 DILDLSWSKNNFLLSSSMDK-TVRLWHPGRKECLK-VFSHNDFVTCVAFNPVDDRYFISGSLDG----KVRLWSISDK-- 442 (712)
T ss_pred hheecccccCCeeEeccccc-cEEeecCCCcceee-EEecCCeeEEEEecccCCCcEeeccccc----ceEEeecCcC--
Confidence 45568999999888888887 89999998876554 2222 3359999866 65554 3343 5777777543
Q ss_pred ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC---ceee-cC-------CCccceeEEEEeeCCE
Q 044808 226 KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE---TLWF-LP-------PWHLGIDMFVSHRGNQ 294 (623)
Q Consensus 226 ~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~---~~~~-l~-------~~~~~~~~~~~~dg~~ 294 (623)
.+++..+=......+.++|||++.+|.+-.+ .+++++..+.+ .... +. .+..|.++ +.-+-+.
T Consensus 443 --~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G---~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~-~p~~~~~ 516 (712)
T KOG0283|consen 443 --KVVDWNDLRDLITAVCYSPDGKGAVIGTFNG---YCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQF-FPGDPDE 516 (712)
T ss_pred --eeEeehhhhhhheeEEeccCCceEEEEEecc---EEEEEEccCCeEEEeeeEeeccCccccCceeeeeEe-cCCCCCe
Confidence 3444322123455688999999999877432 23333333322 0110 11 01112222 1122346
Q ss_pred EEE-EeCCCCCCeEEEEEeCCCCCceeeEEc--CCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECC
Q 044808 295 FFI-RRSDGGFHSDVLTCPVDNTFETTVLIP--HRERVRVEEVRLFADHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 295 ly~-sn~~g~~~~~L~~~d~~~~~~~~~li~--~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
+++ ||.. +|-.+|+.+.....-+-. ......-..+..++++|+... ++ ..+|+++.+
T Consensus 517 vLVTSnDS-----rIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~s-eD--s~VYiW~~~ 576 (712)
T KOG0283|consen 517 VLVTSNDS-----RIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSAS-ED--SWVYIWKND 576 (712)
T ss_pred EEEecCCC-----ceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEee-cC--ceEEEEeCC
Confidence 888 6654 455556533211000000 001112235666677887777 33 358888875
No 307
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=94.17 E-value=3.7 Score=39.59 Aligned_cols=68 Identities=9% Similarity=0.064 Sum_probs=41.2
Q ss_pred EEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeEEEE---eeCCEEEE-EeCCCCCCeEEEEEeCCCC
Q 044808 241 TLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDMFVS---HRGNQFFI-RRSDGGFHSDVLTCPVDNT 316 (623)
Q Consensus 241 ~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~~~~---~dg~~ly~-sn~~g~~~~~L~~~d~~~~ 316 (623)
.+.+|+||+.+++.+. .+.|.++|-++|+ +-...+...+.+|.++ ...+...+ ... .+++|.+|+.+.
T Consensus 188 ~vs~s~d~nc~La~~l---~stlrLlDk~tGk-lL~sYkGhkn~eykldc~l~qsdthV~sgSE----DG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 188 SVSFSKDGNCSLASSL---DSTLRLLDKETGK-LLKSYKGHKNMEYKLDCCLNQSDTHVFSGSE----DGKVYFWDLVDE 259 (307)
T ss_pred eEEecCCCCEEEEeec---cceeeecccchhH-HHHHhcccccceeeeeeeecccceeEEeccC----CceEEEEEeccc
Confidence 4678999999887654 3678899988886 3223344444556332 12234444 222 357888887654
No 308
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=94.13 E-value=0.25 Score=52.60 Aligned_cols=113 Identities=21% Similarity=0.174 Sum_probs=78.0
Q ss_pred CccEEEEEcCCCCCCCCCCCCc--hhhhHHHHHC-CcEEEEEeccCCCcCChhHHHc------ccccCCCchHhHHHHHH
Q 044808 470 SDPLLLFGYGSYGLGPSSYSNS--IASRLTILDR-GIIFAIAHVRGGDEKGKQWHEN------GKLLNKRNTFTDFIACA 540 (623)
Q Consensus 470 ~~P~il~~~Gg~~~~~~~~~~~--~~~~~~~~~~-G~~v~~~~~RG~~~~G~~~~~~------~~~~~~~~~~~D~~~~~ 540 (623)
..|+.|++=|- + +..+.|.. ...+..|+.. |-.|+....|= ||+.+--. .+...-...+.|+...+
T Consensus 85 ~gPiFLmIGGE-g-p~~~~wv~~~~~~~~~~AkkfgA~v~~lEHRF---YG~S~P~~~~st~nlk~LSs~QALaDla~fI 159 (514)
T KOG2182|consen 85 GGPIFLMIGGE-G-PESDKWVGNENLTWLQWAKKFGATVFQLEHRF---YGQSSPIGDLSTSNLKYLSSLQALADLAEFI 159 (514)
T ss_pred CCceEEEEcCC-C-CCCCCccccCcchHHHHHHHhCCeeEEeeeec---cccCCCCCCCcccchhhhhHHHHHHHHHHHH
Confidence 46899988763 2 11222311 1345677775 99999999994 56442211 11122234788888888
Q ss_pred HHHHH-cCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCcc
Q 044808 541 DYLIK-SNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSV 587 (623)
Q Consensus 541 ~~l~~-~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~ 587 (623)
+.|-. -++-|+.+-..+|+||-|.|++|+=..+|++..++||-.+.+
T Consensus 160 ~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~GsvASSapv 207 (514)
T KOG2182|consen 160 KAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVGSVASSAPV 207 (514)
T ss_pred HHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhheeecccccce
Confidence 88865 468888899999999999999999999999987777765543
No 309
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.05 E-value=3.6 Score=49.81 Aligned_cols=152 Identities=13% Similarity=0.100 Sum_probs=81.9
Q ss_pred eeEECCCCCEEEEEEeCc-eEEEEECCCCCccc---c----c----------cCccceeEEecCCeEEEEEeCCCCCCeE
Q 044808 154 AFKVSPNNKLVAFRENCG-TVCVIDSETGAPAE---K----P----------IQGCLEFEWAGDEAFLYTRRNAIAEPQV 215 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~---~----~----------i~~~~~~~WspDg~l~y~~~d~~~~~~v 215 (623)
.+.++|++..|.++.... +|+++|+.+|.... + . +....+++++|||..+|+....+ .+|
T Consensus 687 gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n--~~I 764 (1057)
T PLN02919 687 DVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES--SSI 764 (1057)
T ss_pred EEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC--CeE
Confidence 468899766655554433 89999998775421 0 0 11112589999995344443221 267
Q ss_pred EEEECCCCCcccEEEEe-------------ecC-----Cc--eeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCcee
Q 044808 216 WFHKLGEEQSKDTCLYR-------------TRE-----DL--FDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLW 275 (623)
Q Consensus 216 ~~~~lgt~~~~d~lv~~-------------~~~-----~~--~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~ 275 (623)
+.+++.++.. .++.. ..+ .. ...++.+++||+ |++. +..+..|.++|.+++. ..
T Consensus 765 rv~D~~tg~~--~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVA--Ds~N~rIrviD~~tg~-v~ 838 (1057)
T PLN02919 765 RALDLKTGGS--RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVA--DSYNHKIKKLDPATKR-VT 838 (1057)
T ss_pred EEEECCCCcE--EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEE--ECCCCEEEEEECCCCe-EE
Confidence 7777765421 22211 000 00 113577889997 4442 2345678889987764 32
Q ss_pred ecCC-Cc----cc--------e--eEEEEeeCCEEEEEeCCCCCCeEEEEEeCCCCC
Q 044808 276 FLPP-WH----LG--------I--DMFVSHRGNQFFIRRSDGGFHSDVLTCPVDNTF 317 (623)
Q Consensus 276 ~l~~-~~----~~--------~--~~~~~~dg~~ly~sn~~g~~~~~L~~~d~~~~~ 317 (623)
.+.. .. ++ . ...++++| .+|+++.. +..|.++|+.+..
T Consensus 839 tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVaDt~---Nn~Irvid~~~~~ 891 (1057)
T PLN02919 839 TLAGTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVADTN---NSLIRYLDLNKGE 891 (1057)
T ss_pred EEeccCCcCCCCCcccccccCCceEEEEeCCC-CEEEEECC---CCEEEEEECCCCc
Confidence 2211 00 00 0 12456666 57776654 3578888876653
No 310
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=94.02 E-value=9.5 Score=40.27 Aligned_cols=191 Identities=10% Similarity=0.116 Sum_probs=97.6
Q ss_pred EeeeEECCCCCEEEEE-EeCceEEEEECCCCCccccccC----ccceeEEecCCeEEEEEeCCCCCCeEEEEECCC---C
Q 044808 152 ITAFKVSPNNKLVAFR-ENCGTVCVIDSETGAPAEKPIQ----GCLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGE---E 223 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~-~~~~~l~v~dl~tg~~~~~~i~----~~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt---~ 223 (623)
+..+.-||+|.+|+-+ ... +||+|.+.||+.+. .+. .+.-+.++.||..+++...+ . .|..+.+-+ .
T Consensus 84 v~al~s~n~G~~l~ag~i~g-~lYlWelssG~LL~-v~~aHYQ~ITcL~fs~dgs~iiTgskD--g-~V~vW~l~~lv~a 158 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGTISG-NLYLWELSSGILLN-VLSAHYQSITCLKFSDDGSHIITGSKD--G-AVLVWLLTDLVSA 158 (476)
T ss_pred eeeeecCCCceEEEeecccC-cEEEEEeccccHHH-HHHhhccceeEEEEeCCCcEEEecCCC--c-cEEEEEEEeeccc
Confidence 5678899999999888 444 89999999999874 222 33348999999766665422 1 233333211 1
Q ss_pred ----CcccEEEEeecCCceeEEEEEcCCC--cEEEEEeecceeeEEEEEECCCCC-ceeecCCCccceeEEEEeeCCEEE
Q 044808 224 ----QSKDTCLYRTREDLFDLTLEASESK--KFLFVKSKTKVTGFVYYFDVSRPE-TLWFLPPWHLGIDMFVSHRGNQFF 296 (623)
Q Consensus 224 ----~~~d~lv~~~~~~~~~~~~~~S~Dg--~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l~~~~~~~~~~~~~dg~~ly 296 (623)
..+..-+|.+ +..-..++..+..| .+ +++++. ...+.+.|+..+. -....+|..-. ...++|.+..+|
T Consensus 159 ~~~~~~~p~~~f~~-HtlsITDl~ig~Gg~~~r-l~TaS~--D~t~k~wdlS~g~LLlti~fp~si~-av~lDpae~~~y 233 (476)
T KOG0646|consen 159 DNDHSVKPLHIFSD-HTLSITDLQIGSGGTNAR-LYTASE--DRTIKLWDLSLGVLLLTITFPSSIK-AVALDPAERVVY 233 (476)
T ss_pred ccCCCccceeeecc-CcceeEEEEecCCCccce-EEEecC--CceEEEEEeccceeeEEEecCCcce-eEEEcccccEEE
Confidence 0111222221 11111223333332 22 233332 2345555666665 22233443321 234778778888
Q ss_pred E-EeCCCCCCeEEEEEeCCCCC----------------ceeeEEcCCCCceEeEEEEe-CCEEEEEEeeCCcceEEEEEC
Q 044808 297 I-RRSDGGFHSDVLTCPVDNTF----------------ETTVLIPHRERVRVEEVRLF-ADHIAVYELEEGLPKITTYCL 358 (623)
Q Consensus 297 ~-sn~~g~~~~~L~~~d~~~~~----------------~~~~li~~~~d~~i~~~~~~-~~~Lv~~~~~~g~~~l~v~~l 358 (623)
+ +..+ .|+..++.+.. ..+-++.+..+..|.-+++. ...|+++..++|. +.+++.
T Consensus 234 iGt~~G-----~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~--VcvWdi 306 (476)
T KOG0646|consen 234 IGTEEG-----KIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGK--VCVWDI 306 (476)
T ss_pred ecCCcc-----eEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCC--EEEEec
Confidence 8 6554 23333221110 01114444432345555543 3467777777764 666666
Q ss_pred C
Q 044808 359 P 359 (623)
Q Consensus 359 ~ 359 (623)
.
T Consensus 307 ~ 307 (476)
T KOG0646|consen 307 Y 307 (476)
T ss_pred c
Confidence 5
No 311
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=93.80 E-value=0.34 Score=47.73 Aligned_cols=115 Identities=13% Similarity=0.089 Sum_probs=66.5
Q ss_pred CCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCc--EEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHc
Q 044808 469 GSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGI--IFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKS 546 (623)
Q Consensus 469 ~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~--~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~ 546 (623)
.+..++||+|| |+.+...... ...|...+-|+ .++....=..|. -..|..+ +..-...-.++...++.|.+.
T Consensus 16 ~~~~vlvfVHG-yn~~f~~a~~--r~aql~~~~~~~~~~i~FsWPS~g~-~~~Y~~d--~~~a~~s~~~l~~~L~~L~~~ 89 (233)
T PF05990_consen 16 PDKEVLVFVHG-YNNSFEDALR--RAAQLAHDLGFPGVVILFSWPSDGS-LLGYFYD--RESARFSGPALARFLRDLARA 89 (233)
T ss_pred CCCeEEEEEeC-CCCCHHHHHH--HHHHHHHHhCCCceEEEEEcCCCCC-hhhhhhh--hhhHHHHHHHHHHHHHHHHhc
Confidence 45689999999 6655433222 22233333333 444444333322 1122221 112223455666666666665
Q ss_pred CCCCCCcEEEEEeChHHHHHHHHHHh----CC-----CeeeEEEecCCccchhh
Q 044808 547 NYCSEDNLCIEGGSAGGMLIGAVLNM----RP-----ELFKVAVADVPSVDVLT 591 (623)
Q Consensus 547 ~~~d~~ri~i~G~S~GG~l~~~~~~~----~p-----~~f~a~v~~~~~~d~~~ 591 (623)
....+|-|+++|.|+.+++.++.+ .+ ..|..+|..+|=+|.-.
T Consensus 90 --~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d~ 141 (233)
T PF05990_consen 90 --PGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDNDV 141 (233)
T ss_pred --cCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHHH
Confidence 345899999999999999888755 11 25778888888777643
No 312
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=93.75 E-value=1.5 Score=45.20 Aligned_cols=191 Identities=15% Similarity=0.154 Sum_probs=110.9
Q ss_pred EEEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccC--c--cceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCc
Q 044808 150 YRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQ--G--CLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 150 ~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~--~--~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~ 225 (623)
.+|..+++||+....+-.++.++|.|||..-.+... .+. + +.++.|-|.-+++++..+++ -|-+++..++..
T Consensus 181 eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~-vL~GHgwdVksvdWHP~kgLiasgskDn---lVKlWDprSg~c 256 (464)
T KOG0284|consen 181 EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEER-VLRGHGWDVKSVDWHPTKGLIASGSKDN---LVKLWDPRSGSC 256 (464)
T ss_pred hhhheeccCCCCceeEEecCCCeEEEEeccCCchhh-eeccCCCCcceeccCCccceeEEccCCc---eeEeecCCCcch
Confidence 578889999988877777777799999987665422 232 2 34699999877777765443 356667666643
Q ss_pred ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcccee-EEEEeeCCEEEE-EeCCCC
Q 044808 226 KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGID-MFVSHRGNQFFI-RRSDGG 303 (623)
Q Consensus 226 ~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~-~~~~~dg~~ly~-sn~~g~ 303 (623)
--. +.. +....+.+.|++++.||+-.+.+ ..+-++|+.+.+++......+..+. ..|.|-...|+. ...++
T Consensus 257 l~t-lh~--HKntVl~~~f~~n~N~Llt~skD---~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg- 329 (464)
T KOG0284|consen 257 LAT-LHG--HKNTVLAVKFNPNGNWLLTGSKD---QSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG- 329 (464)
T ss_pred hhh-hhh--ccceEEEEEEcCCCCeeEEccCC---ceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCC-
Confidence 111 111 22245678899999998754332 3566777764333444443433332 245565555555 33332
Q ss_pred CCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeC-CEEEEEEeeCCcceEEE
Q 044808 304 FHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFA-DHIAVYELEEGLPKITT 355 (623)
Q Consensus 304 ~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~-~~Lv~~~~~~g~~~l~v 355 (623)
....+.++++.+- ..+++..+..|-++.+.. ++|+.+...+-..+.+.
T Consensus 330 -svvh~~v~~~~p~---~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 330 -SVVHWVVGLEEPL---GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred -ceEEEeccccccc---cCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 2334444433321 144554455566676665 67777765554444443
No 313
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=93.72 E-value=0.46 Score=47.82 Aligned_cols=112 Identities=18% Similarity=0.146 Sum_probs=72.7
Q ss_pred ccEEEEEcCCCCCCCCCCCCchhhhHHHH---HCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcC
Q 044808 471 DPLLLFGYGSYGLGPSSYSNSIASRLTIL---DRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSN 547 (623)
Q Consensus 471 ~P~il~~~Gg~~~~~~~~~~~~~~~~~~~---~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 547 (623)
.++|+++=|-||... .|. .....|- +..+.|..+...|-...... .......+.-+++|.++-..-++++-
T Consensus 2 ~~li~~IPGNPGlv~--fY~--~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~--~~~~~~~~~~sL~~QI~hk~~~i~~~ 75 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVE--FYE--EFLSALYEKLNPQFEILGISHAGHSTSPSN--SKFSPNGRLFSLQDQIEHKIDFIKEL 75 (266)
T ss_pred cEEEEEECCCCChHH--HHH--HHHHHHHHhCCCCCeeEEecCCCCcCCccc--ccccCCCCccCHHHHHHHHHHHHHHH
Confidence 478899999888652 122 2222333 45899999988885433222 10012344557777776444333322
Q ss_pred C----CCCCcEEEEEeChHHHHHHHHHHhCC---CeeeEEEecCCccc
Q 044808 548 Y----CSEDNLCIEGGSAGGMLIGAVLNMRP---ELFKVAVADVPSVD 588 (623)
Q Consensus 548 ~----~d~~ri~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~~~~~d 588 (623)
. -...+|.++|+|-|+|+++.++-+.| ...+.++...|.+-
T Consensus 76 ~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi~ 123 (266)
T PF10230_consen 76 IPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTIE 123 (266)
T ss_pred hhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCccc
Confidence 2 14589999999999999999999998 56778888888653
No 314
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=93.63 E-value=3.3 Score=44.59 Aligned_cols=131 Identities=13% Similarity=0.171 Sum_probs=74.1
Q ss_pred eEECCCCCEEEEEE----eCc--------eEEEEECCCCCccccccC---ccceeEEecCC-eEEEEEeCCCCCC-eEEE
Q 044808 155 FKVSPNNKLVAFRE----NCG--------TVCVIDSETGAPAEKPIQ---GCLEFEWAGDE-AFLYTRRNAIAEP-QVWF 217 (623)
Q Consensus 155 ~~~SPDG~~lA~~~----~~~--------~l~v~dl~tg~~~~~~i~---~~~~~~WspDg-~l~y~~~d~~~~~-~v~~ 217 (623)
+.|.+-|.-|.... |.. +||++++. |+...-.++ .+..+.|+++| .|..+-. -.| .+-+
T Consensus 223 m~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyG---fMPAkvti 298 (566)
T KOG2315|consen 223 MKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPLLKEGPVHDVTWSPSGREFAVVYG---FMPAKVTI 298 (566)
T ss_pred EEeccCCceEEEEEEEeecCCCccccccceEEEEEec-CceEEEecCCCCCceEEEECCCCCEEEEEEe---cccceEEE
Confidence 56777787655543 221 89999998 443221233 23459999999 5554431 235 6777
Q ss_pred EECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeec--ceeeEEEEEECCCCCceeecCCC-cccee-EEEEeeCC
Q 044808 218 HKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKT--KVTGFVYYFDVSRPETLWFLPPW-HLGID-MFVSHRGN 293 (623)
Q Consensus 218 ~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~--~~~s~l~~~dl~~~~~~~~l~~~-~~~~~-~~~~~dg~ 293 (623)
+++... .||.-+..... .+.++|-|++|++.--. .+.-++| |..+.+ ++... ..+.. ..|+|||.
T Consensus 299 fnlr~~-----~v~df~egpRN-~~~fnp~g~ii~lAGFGNL~G~mEvw--Dv~n~K---~i~~~~a~~tt~~eW~PdGe 367 (566)
T KOG2315|consen 299 FNLRGK-----PVFDFPEGPRN-TAFFNPHGNIILLAGFGNLPGDMEVW--DVPNRK---LIAKFKAANTTVFEWSPDGE 367 (566)
T ss_pred EcCCCC-----EeEeCCCCCcc-ceEECCCCCEEEEeecCCCCCceEEE--eccchh---hccccccCCceEEEEcCCCc
Confidence 777542 34443222121 24579999998885422 2334544 555432 23221 11223 36999999
Q ss_pred EEEE-EeC
Q 044808 294 QFFI-RRS 300 (623)
Q Consensus 294 ~ly~-sn~ 300 (623)
+|+. |..
T Consensus 368 ~flTATTa 375 (566)
T KOG2315|consen 368 YFLTATTA 375 (566)
T ss_pred EEEEEecc
Confidence 8888 664
No 315
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.44 E-value=0.036 Score=50.23 Aligned_cols=91 Identities=13% Similarity=0.204 Sum_probs=59.4
Q ss_pred hhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHH-HHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 044808 494 SRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIAC-ADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNM 572 (623)
Q Consensus 494 ~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~ 572 (623)
....+++.|-+-+..= -| -=.+.|...- ....+----.+| -+|++++.. |.+..+.|.|.|||+++..+.+
T Consensus 50 ala~fie~G~vQlft~-~g--ldsESf~a~h---~~~adr~~rH~AyerYv~eEal--pgs~~~sgcsmGayhA~nfvfr 121 (227)
T COG4947 50 ALASFIEEGLVQLFTL-SG--LDSESFLATH---KNAADRAERHRAYERYVIEEAL--PGSTIVSGCSMGAYHAANFVFR 121 (227)
T ss_pred HHHHHHhcCcEEEEEe-cc--cchHhHhhhc---CCHHHHHHHHHHHHHHHHHhhc--CCCccccccchhhhhhhhhhee
Confidence 3456777887765532 22 1224454311 101111111223 346777644 5788899999999999999999
Q ss_pred CCCeeeEEEecCCccchhhh
Q 044808 573 RPELFKVAVADVPSVDVLTT 592 (623)
Q Consensus 573 ~p~~f~a~v~~~~~~d~~~~ 592 (623)
+|++|..+|+..|+.|...+
T Consensus 122 hP~lftkvialSGvYdardf 141 (227)
T COG4947 122 HPHLFTKVIALSGVYDARDF 141 (227)
T ss_pred ChhHhhhheeecceeeHHHh
Confidence 99999999999999987644
No 316
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=93.40 E-value=0.13 Score=53.35 Aligned_cols=112 Identities=13% Similarity=0.093 Sum_probs=62.2
Q ss_pred CCCccEEEEEcCCCCCCC-CCCCCchhhhHHHHHC---CcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHH
Q 044808 468 DGSDPLLLFGYGSYGLGP-SSYSNSIASRLTILDR---GIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYL 543 (623)
Q Consensus 468 ~~~~P~il~~~Gg~~~~~-~~~~~~~~~~~~~~~~---G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l 543 (623)
+.+.|+++++|| +.... ...|.. .....++.+ .+.|+++|...+... .+..+.... ...-.-+...+..|
T Consensus 68 n~~~pt~iiiHG-w~~~~~~~~~~~-~~~~all~~~~~d~NVI~VDWs~~a~~--~Y~~a~~n~--~~vg~~la~~l~~L 141 (331)
T PF00151_consen 68 NPSKPTVIIIHG-WTGSGSSESWIQ-DMIKALLQKDTGDYNVIVVDWSRGASN--NYPQAVANT--RLVGRQLAKFLSFL 141 (331)
T ss_dssp -TTSEEEEEE---TT-TT-TTTHHH-HHHHHHHCC--S-EEEEEEE-HHHHSS---HHHHHHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcC-cCCcccchhHHH-HHHHHHHhhccCCceEEEEcchhhccc--cccchhhhH--HHHHHHHHHHHHHH
Confidence 456899999999 54444 334430 233445554 899999998764432 222221110 01112333456677
Q ss_pred HHcCCCCCCcEEEEEeChHHHHHHHHHHhCCC--eeeEEEecCC
Q 044808 544 IKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPE--LFKVAVADVP 585 (623)
Q Consensus 544 ~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~--~f~a~v~~~~ 585 (623)
.+..-+++++|-+.|+|-|+.+++.+..+-.. ....+.+.-|
T Consensus 142 ~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~~~ki~rItgLDP 185 (331)
T PF00151_consen 142 INNFGVPPENIHLIGHSLGAHVAGFAGKYLKGGGKIGRITGLDP 185 (331)
T ss_dssp HHHH---GGGEEEEEETCHHHHHHHHHHHTTT---SSEEEEES-
T ss_pred HhhcCCChhHEEEEeeccchhhhhhhhhhccCcceeeEEEecCc
Confidence 76666889999999999999999988876555 4555555544
No 317
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=93.34 E-value=0.2 Score=48.82 Aligned_cols=74 Identities=18% Similarity=0.203 Sum_probs=50.2
Q ss_pred EeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCC----CeeeEEEe
Q 044808 508 AHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRP----ELFKVAVA 582 (623)
Q Consensus 508 ~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p----~~f~a~v~ 582 (623)
+-+||+......|.+....... ....-...|++||.+.---.++.|.+.|+|=||.|+..++...+ ++...+++
T Consensus 41 vaFRGTd~t~~~W~ed~~~~~~-~~~~~q~~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~ 118 (224)
T PF11187_consen 41 VAFRGTDDTLVDWKEDFNMSFQ-DETPQQKSALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYS 118 (224)
T ss_pred EEEECCCCchhhHHHHHHhhcC-CCCHHHHHHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEE
Confidence 3579986667789887655433 23344568888887643233557999999999999988877633 34555553
No 318
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=93.34 E-value=9.1 Score=42.23 Aligned_cols=57 Identities=18% Similarity=0.313 Sum_probs=43.2
Q ss_pred CcEEEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCcc----ceeEEecCC-eEEEEE
Q 044808 148 ENYRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQGC----LEFEWAGDE-AFLYTR 206 (623)
Q Consensus 148 ~~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~~----~~~~WspDg-~l~y~~ 206 (623)
++..+..+.+-|||..|..+.+. .++|+|+..|..++ ++.+- ..++||.|| +|+-..
T Consensus 11 ~~hci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llq-tLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 11 AEHCINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQ-PLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred cccchheeEECCCCceEEEecCC-EEEEEeCCCccccc-ccccccceEEEEEEccCCceeccCC
Confidence 44577889999999999888766 79999999998775 44432 349999999 554333
No 319
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=93.30 E-value=0.89 Score=48.12 Aligned_cols=93 Identities=15% Similarity=0.155 Sum_probs=63.7
Q ss_pred eeEECCCCCEEEEEEeCceEEEEECCCCCccccccCcc--ceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCcccEEE
Q 044808 154 AFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQGC--LEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQSKDTCL 230 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~~--~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv 230 (623)
...+.|.| .||.+...+.+.|+|.++...+....++. +-+.++||| .|+..+.|. .||++.+...... ...
T Consensus 412 ~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~----~iyiy~Vs~~g~~-y~r 485 (626)
T KOG2106|consen 412 CADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDN----HIYIYRVSANGRK-YSR 485 (626)
T ss_pred EeeccCcc-eEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCC----eEEEEEECCCCcE-EEE
Confidence 46788999 88888887799999999977665433332 239999999 676666443 5777777654321 112
Q ss_pred EeecCCceeEEEEEcCCCcEEE
Q 044808 231 YRTREDLFDLTLEASESKKFLF 252 (623)
Q Consensus 231 ~~~~~~~~~~~~~~S~Dg~~l~ 252 (623)
+..-...+...+.||+|+++|.
T Consensus 486 ~~k~~gs~ithLDwS~Ds~~~~ 507 (626)
T KOG2106|consen 486 VGKCSGSPITHLDWSSDSQFLV 507 (626)
T ss_pred eeeecCceeEEeeecCCCceEE
Confidence 2222235667889999999975
No 320
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=93.29 E-value=1 Score=51.77 Aligned_cols=56 Identities=20% Similarity=0.335 Sum_probs=37.0
Q ss_pred EeeeEECCCCCEEEEEEe--C---c-eEEEEECCCCC--ccccccCccceeEE--ecCC--eEEEEEe
Q 044808 152 ITAFKVSPNNKLVAFREN--C---G-TVCVIDSETGA--PAEKPIQGCLEFEW--AGDE--AFLYTRR 207 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~--~---~-~l~v~dl~tg~--~~~~~i~~~~~~~W--spDg--~l~y~~~ 207 (623)
+-.+.|||||++|||... . . .|||.||.+.. .+...++++.=+.| ..+| -|+|++.
T Consensus 352 i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~gdt~ivyv~~ 419 (912)
T TIGR02171 352 VYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLENGDTVIVYVSD 419 (912)
T ss_pred eecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCCCCeEEEEEcC
Confidence 445899999999999322 2 1 79999998643 23333444433566 5666 4778765
No 321
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=93.23 E-value=1.2 Score=44.28 Aligned_cols=117 Identities=8% Similarity=0.065 Sum_probs=73.4
Q ss_pred CcEEEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccC-----c-cceeEEecCCeEEEEEeCCCCCCeEEEEECC
Q 044808 148 ENYRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQ-----G-CLEFEWAGDEAFLYTRRNAIAEPQVWFHKLG 221 (623)
Q Consensus 148 ~~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~-----~-~~~~~WspDg~l~y~~~d~~~~~~v~~~~lg 221 (623)
+...+..+++.|.|.+|+.+.+..+++++|++|-+-.....+ + +..+..|+.|++|.+...+ . .|.+++=-
T Consensus 215 d~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkD--G-~IklwDGV 291 (430)
T KOG0640|consen 215 DTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKD--G-AIKLWDGV 291 (430)
T ss_pred ccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccC--C-cEEeeccc
Confidence 344567789999999999999888999999998763321111 2 2348889998888886532 1 24444411
Q ss_pred CCCcccEEEEeecCCc-eeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC
Q 044808 222 EEQSKDTCLYRTREDL-FDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE 272 (623)
Q Consensus 222 t~~~~d~lv~~~~~~~-~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~ 272 (623)
+.. =+..+++.+.+ -..+..++++|+||+ +++..+-+++..+.++.
T Consensus 292 S~r--Cv~t~~~AH~gsevcSa~Ftkn~kyiL---sSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 292 SNR--CVRTIGNAHGGSEVCSAVFTKNGKYIL---SSGKDSTVKLWEISTGR 338 (430)
T ss_pred cHH--HHHHHHhhcCCceeeeEEEccCCeEEe---ecCCcceeeeeeecCCc
Confidence 110 01123333322 345677999999986 34445667777777664
No 322
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=93.00 E-value=1.7 Score=42.16 Aligned_cols=111 Identities=10% Similarity=0.071 Sum_probs=68.5
Q ss_pred EeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc-ccC-ccceeEEecCCeEEEEEeCCCCCC-eEEEEECCCCCcccE
Q 044808 152 ITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK-PIQ-GCLEFEWAGDEAFLYTRRNAIAEP-QVWFHKLGEEQSKDT 228 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~-~i~-~~~~~~WspDg~l~y~~~d~~~~~-~v~~~~lgt~~~~d~ 228 (623)
+.++.+|+||++|..+.-. .|.+||..+-+.+.. ..+ ++.+..-.|+..+|..- . .. .+|..+..|+. ++
T Consensus 187 VtSlEvs~dG~ilTia~gs-sV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaG-g---ed~~~~kfDy~Tge--Ei 259 (334)
T KOG0278|consen 187 VTSLEVSQDGRILTIAYGS-SVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAG-G---EDFKVYKFDYNTGE--EI 259 (334)
T ss_pred CcceeeccCCCEEEEecCc-eeEEeccccccceeeccCccccccccccCCCceEEec-C---cceEEEEEeccCCc--ee
Confidence 5678999999997766433 688999988776652 222 44456667887554432 2 23 78888888874 34
Q ss_pred EEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCC
Q 044808 229 CLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSR 270 (623)
Q Consensus 229 lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~ 270 (623)
-.|...+..=...+.+||||..-+.. +..++-.||......
T Consensus 260 ~~~nkgh~gpVhcVrFSPdGE~yAsG-SEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 260 GSYNKGHFGPVHCVRFSPDGELYASG-SEDGTIRLWQTTPGK 300 (334)
T ss_pred eecccCCCCceEEEEECCCCceeecc-CCCceEEEEEecCCC
Confidence 44422222223457899999853322 233456777776543
No 323
>COG3150 Predicted esterase [General function prediction only]
Probab=92.95 E-value=0.31 Score=44.32 Aligned_cols=66 Identities=11% Similarity=-0.054 Sum_probs=40.0
Q ss_pred chHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEe---cCCccchhhhhhCCCCcc
Q 044808 531 NTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVA---DVPSVDVLTTILFYPRKR 600 (623)
Q Consensus 531 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~---~~~~~d~~~~~~~~~~~~ 600 (623)
......++-++-++++. .| ..++|.|.|-|||.+-|+..++ -+++++. ..|.-+|...+..+....
T Consensus 40 h~p~~a~~ele~~i~~~-~~-~~p~ivGssLGGY~At~l~~~~--Girav~~NPav~P~e~l~gylg~~en~y 108 (191)
T COG3150 40 HDPQQALKELEKAVQEL-GD-ESPLIVGSSLGGYYATWLGFLC--GIRAVVFNPAVRPYELLTGYLGRPENPY 108 (191)
T ss_pred CCHHHHHHHHHHHHHHc-CC-CCceEEeecchHHHHHHHHHHh--CChhhhcCCCcCchhhhhhhcCCCCCCC
Confidence 34466666666666653 23 2399999999999999987665 2355443 234445444444444333
No 324
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=92.88 E-value=3.9 Score=42.37 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=61.6
Q ss_pred eeEECCCCCEEEEEEeCceEEEEECCCCCccccccCc---cceeEEecCCe-EEEEEeCCCCC-------CeEEEEEC--
Q 044808 154 AFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQG---CLEFEWAGDEA-FLYTRRNAIAE-------PQVWFHKL-- 220 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~---~~~~~WspDg~-l~y~~~d~~~~-------~~v~~~~l-- 220 (623)
...||||+.++.++.-.+.++++|+..|..+...-++ +.+++|.|-++ +.-...+...+ +.++++..
T Consensus 128 dL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~ 207 (434)
T KOG1009|consen 128 DLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDI 207 (434)
T ss_pred hhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeE
Confidence 4689999999999876558999999999987522222 23599998884 43333343111 12233321
Q ss_pred ---CCCC---cccEEEEeec-CCceeEEEEEcCCCcEEEEEe
Q 044808 221 ---GEEQ---SKDTCLYRTR-EDLFDLTLEASESKKFLFVKS 255 (623)
Q Consensus 221 ---gt~~---~~d~lv~~~~-~~~~~~~~~~S~Dg~~l~i~s 255 (623)
+... ..-..+|.+. -+.|+-..++||||..|+.-+
T Consensus 208 m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 208 MPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 1110 1112244422 244777889999999887654
No 325
>PLN02209 serine carboxypeptidase
Probab=92.86 E-value=0.62 Score=50.30 Aligned_cols=143 Identities=12% Similarity=0.098 Sum_probs=77.6
Q ss_pred eEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCC---------Cch----------hhhHHHHHCCcE
Q 044808 444 KRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYS---------NSI----------ASRLTILDRGII 504 (623)
Q Consensus 444 ~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~---------~~~----------~~~~~~~~~G~~ 504 (623)
+.+....|..+-.|++.... . ....|+|++.-||||.+...++ ... ..-.+|.+.- -
T Consensus 44 ~~v~~~~~~~lf~~f~es~~--~-~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~a-n 119 (437)
T PLN02209 44 IGIGEEENVQFFYYFIKSDK--N-PQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKTA-N 119 (437)
T ss_pred EEecCCCCeEEEEEEEecCC--C-CCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhcC-c
Confidence 33433345556655443332 2 3457999999999997632111 100 1123455544 4
Q ss_pred EEEEeccCCCcCChhHHHcccccC-CCchHhHHHHHHH-HHHHcCCCCCCcEEEEEeChHHHHH----HHHHHhC-----
Q 044808 505 FAIAHVRGGDEKGKQWHENGKLLN-KRNTFTDFIACAD-YLIKSNYCSEDNLCIEGGSAGGMLI----GAVLNMR----- 573 (623)
Q Consensus 505 v~~~~~RG~~~~G~~~~~~~~~~~-~~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~l~----~~~~~~~----- 573 (623)
++.+|.=-|.||... ....... -..+.+|+..+++ |+.+.+--....+.|+|.||||.-+ ..++.+.
T Consensus 120 llfiDqPvGtGfSy~--~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~i~~~~~~~~~ 197 (437)
T PLN02209 120 IIFLDQPVGSGFSYS--KTPIERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHEISKGNYICCN 197 (437)
T ss_pred EEEecCCCCCCccCC--CCCCCccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHHHHhhcccccC
Confidence 556664444444311 1110111 1134467776666 4555555555789999999999743 3332221
Q ss_pred CC-eeeEEEecCCccchhhh
Q 044808 574 PE-LFKVAVADVPSVDVLTT 592 (623)
Q Consensus 574 p~-~f~a~v~~~~~~d~~~~ 592 (623)
+. -++.++...|++|....
T Consensus 198 ~~inl~Gi~igng~td~~~q 217 (437)
T PLN02209 198 PPINLQGYVLGNPITHIEFE 217 (437)
T ss_pred CceeeeeEEecCcccChhhh
Confidence 11 47889999999997543
No 326
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=92.84 E-value=5.3 Score=40.98 Aligned_cols=146 Identities=12% Similarity=0.066 Sum_probs=71.8
Q ss_pred EEEeeeEECCCCCEEEEEEe-----Cc------eEEEEECCCCCccc--cccCccceeEEecCCe-EEEEEeCCCCCCeE
Q 044808 150 YRITAFKVSPNNKLVAFREN-----CG------TVCVIDSETGAPAE--KPIQGCLEFEWAGDEA-FLYTRRNAIAEPQV 215 (623)
Q Consensus 150 ~~l~~~~~SPDG~~lA~~~~-----~~------~l~v~dl~tg~~~~--~~i~~~~~~~WspDg~-l~y~~~d~~~~~~v 215 (623)
.......+.|||++.+=... .. .||.+|..++.... +.+.-..+++||||++ +|++-.. ..+|
T Consensus 111 ~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~---~~~i 187 (307)
T COG3386 111 NRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP---ANRI 187 (307)
T ss_pred CCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCC---CCeE
Confidence 44556789999986443333 11 79999985433221 1122234699999994 5554322 1267
Q ss_pred EEEECCC--CC--cccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCce-eecCCCccce-eEEEE
Q 044808 216 WFHKLGE--EQ--SKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETL-WFLPPWHLGI-DMFVS 289 (623)
Q Consensus 216 ~~~~lgt--~~--~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~-~~l~~~~~~~-~~~~~ 289 (623)
++..+.. .. .....++-...+..--++.+..+|.+ ++ +.......|..++.+ +... +...|...-. ...-.
T Consensus 188 ~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~l-w~-~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG 264 (307)
T COG3386 188 HRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNL-WV-AAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGG 264 (307)
T ss_pred EEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCE-EE-ecccCCceEEEECCC-CcEEEEEECCCCCCccceEeC
Confidence 7776641 11 11112222112222223445566643 21 222223567777776 4311 1223422111 12345
Q ss_pred eeCCEEEE-EeCC
Q 044808 290 HRGNQFFI-RRSD 301 (623)
Q Consensus 290 ~dg~~ly~-sn~~ 301 (623)
++.++||+ +...
T Consensus 265 ~~~~~L~iTs~~~ 277 (307)
T COG3386 265 PDLNTLYITSARS 277 (307)
T ss_pred CCcCEEEEEecCC
Confidence 66799999 6655
No 327
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=92.62 E-value=5 Score=44.84 Aligned_cols=151 Identities=16% Similarity=0.101 Sum_probs=86.1
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCC-----C---Cccc------cccCc-cceeEEecCCeEEEEEeCCCCCC-e
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSET-----G---APAE------KPIQG-CLEFEWAGDEAFLYTRRNAIAEP-Q 214 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~t-----g---~~~~------~~i~~-~~~~~WspDg~l~y~~~d~~~~~-~ 214 (623)
.|..++.||||+..+-+....++.+||..- | +.+. ..+++ +-.+..||||+++-+..-+ .. +
T Consensus 456 aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLd--nTVk 533 (888)
T KOG0306|consen 456 AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLD--NTVK 533 (888)
T ss_pred ceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEecc--CeEE
Confidence 467789999999988887666777777541 2 1111 12333 2348999999665555422 23 6
Q ss_pred EEEEECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeE-EEEeeCC
Q 044808 215 VWFHKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDM-FVSHRGN 293 (623)
Q Consensus 215 v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~-~~~~dg~ 293 (623)
||+.+ +-. =-.-+|...=| ...+.+|||++.|+-.+.+ -+-.+|=+|..+ -.+.+..+.+.+.+ .|-| ..
T Consensus 534 VyflD--tlK-FflsLYGHkLP--V~smDIS~DSklivTgSAD-KnVKiWGLdFGD--CHKS~fAHdDSvm~V~F~P-~~ 604 (888)
T KOG0306|consen 534 VYFLD--TLK-FFLSLYGHKLP--VLSMDISPDSKLIVTGSAD-KNVKIWGLDFGD--CHKSFFAHDDSVMSVQFLP-KT 604 (888)
T ss_pred EEEec--cee-eeeeecccccc--eeEEeccCCcCeEEeccCC-CceEEeccccch--hhhhhhcccCceeEEEEcc-cc
Confidence 77655 221 01224443323 3456789999987643332 233566555433 23456666666544 4666 56
Q ss_pred EEEE-EeCCCCCCeEEEEEeCCCC
Q 044808 294 QFFI-RRSDGGFHSDVLTCPVDNT 316 (623)
Q Consensus 294 ~ly~-sn~~g~~~~~L~~~d~~~~ 316 (623)
+++| +.++ .++-.+|.+..
T Consensus 605 ~~FFt~gKD----~kvKqWDg~kF 624 (888)
T KOG0306|consen 605 HLFFTCGKD----GKVKQWDGEKF 624 (888)
T ss_pred eeEEEecCc----ceEEeechhhh
Confidence 7777 6666 35666665443
No 328
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=92.50 E-value=0.97 Score=44.23 Aligned_cols=48 Identities=17% Similarity=0.331 Sum_probs=33.2
Q ss_pred HHHHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCC---CeeeEEEec
Q 044808 536 FIACADYLIKS---NYCSEDNLCIEGGSAGGMLIGAVLNMRP---ELFKVAVAD 583 (623)
Q Consensus 536 ~~~~~~~l~~~---~~~d~~ri~i~G~S~GG~l~~~~~~~~p---~~f~a~v~~ 583 (623)
+..+++.+.+. ....+.+|.+.|+|.||..+-.++...+ +..+.+|..
T Consensus 66 ~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl 119 (225)
T PF07819_consen 66 LAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITL 119 (225)
T ss_pred HHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEE
Confidence 34466665543 3577899999999999999888876543 345555543
No 329
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.49 E-value=0.31 Score=32.86 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCcEEEEEeecc--eeeEEEE
Q 044808 238 FDLTLEASESKKFLFVKSKTK--VTGFVYY 265 (623)
Q Consensus 238 ~~~~~~~S~Dg~~l~i~s~~~--~~s~l~~ 265 (623)
....+.|||||++|++.+... +..+||+
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~~~~g~~diy~ 39 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNRNDRGSFDIYV 39 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEECT--SSEEEEE
T ss_pred cccCEEEecCCCEEEEEecCCCCCCcCEEC
Confidence 345678999999999988766 6667774
No 330
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=92.43 E-value=14 Score=37.78 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=40.2
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccC----ccceeEEecCCeEEEEE
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQ----GCLEFEWAGDEAFLYTR 206 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~----~~~~~~WspDg~l~y~~ 206 (623)
.+..+.+-|-.+++|-+....+|.|||++||+... +++ -+.+++.|+-.-++|..
T Consensus 153 WVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl-tltGhi~~vr~vavS~rHpYlFs~ 211 (460)
T KOG0285|consen 153 WVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL-TLTGHIETVRGVAVSKRHPYLFSA 211 (460)
T ss_pred eEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE-eecchhheeeeeeecccCceEEEe
Confidence 45678999999999988777799999999998653 333 34567777766344443
No 331
>PRK02888 nitrous-oxide reductase; Validated
Probab=92.34 E-value=2.4 Score=47.18 Aligned_cols=109 Identities=10% Similarity=-0.037 Sum_probs=62.2
Q ss_pred eeEECCCCCEEEEEEeCc----eEEEEECCCCCccccccCccce-eEEecCCeEEEEEeCCCCCCeEEEEECCCCC-ccc
Q 044808 154 AFKVSPNNKLVAFRENCG----TVCVIDSETGAPAEKPIQGCLE-FEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQ-SKD 227 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~----~l~v~dl~tg~~~~~~i~~~~~-~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~-~~d 227 (623)
...+||||+++..+.... ++.+++......+- .-+... -++.+||++.+.. + .+|-..+..+.. ...
T Consensus 239 ~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~v--vfni~~iea~vkdGK~~~V~-g----n~V~VID~~t~~~~~~ 311 (635)
T PRK02888 239 NVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVV--VFNIARIEEAVKAGKFKTIG-G----SKVPVVDGRKAANAGS 311 (635)
T ss_pred cceECCCCCEEEEeccCcccCcceeeeccccCceEE--EEchHHHHHhhhCCCEEEEC-C----CEEEEEECCccccCCc
Confidence 468999999988886322 67777764433211 111111 3556788544441 1 157677766510 001
Q ss_pred EEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCC
Q 044808 228 TCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRP 271 (623)
Q Consensus 228 ~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~ 271 (623)
.++..-+-+..-.++.+||||+++++ .+..++.+-++|+++.
T Consensus 312 ~v~~yIPVGKsPHGV~vSPDGkylyV--anklS~tVSVIDv~k~ 353 (635)
T PRK02888 312 ALTRYVPVPKNPHGVNTSPDGKYFIA--NGKLSPTVTVIDVRKL 353 (635)
T ss_pred ceEEEEECCCCccceEECCCCCEEEE--eCCCCCcEEEEEChhh
Confidence 22222122333456788999999887 4455677888888763
No 332
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=92.14 E-value=0.36 Score=49.59 Aligned_cols=101 Identities=14% Similarity=0.233 Sum_probs=64.1
Q ss_pred CcEEEeeeEECCCCCEEEEEEeCceEEEEECC--------C-----CC-c-ccccc----CccceeEEecCCe-EEEEEe
Q 044808 148 ENYRITAFKVSPNNKLVAFRENCGTVCVIDSE--------T-----GA-P-AEKPI----QGCLEFEWAGDEA-FLYTRR 207 (623)
Q Consensus 148 ~~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~--------t-----g~-~-~~~~i----~~~~~~~WspDg~-l~y~~~ 207 (623)
...++..++|||+|..||-+.|.+.+++|-.. + .+ . +...+ ..+..++|+||+. +...+.
T Consensus 64 H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~ 143 (434)
T KOG1009|consen 64 HTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSV 143 (434)
T ss_pred CcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeec
Confidence 45788999999999999999998866666654 2 00 0 00011 1233589999995 444444
Q ss_pred CCCCCCeEEEEECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEe
Q 044808 208 NAIAEPQVWFHKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKS 255 (623)
Q Consensus 208 d~~~~~~v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s 255 (623)
+. .++.+++..++. ..+.. .+..|.-+++|.|-++|+.-.+
T Consensus 144 dn----s~~l~Dv~~G~l--~~~~~-dh~~yvqgvawDpl~qyv~s~s 184 (434)
T KOG1009|consen 144 DN----SVRLWDVHAGQL--LAILD-DHEHYVQGVAWDPLNQYVASKS 184 (434)
T ss_pred cc----eEEEEEecccee--Eeecc-ccccccceeecchhhhhhhhhc
Confidence 43 477888888753 11222 2334555678888888876444
No 333
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=92.12 E-value=8.7 Score=40.28 Aligned_cols=193 Identities=9% Similarity=0.105 Sum_probs=104.7
Q ss_pred eEECCCCCEEEEE-EeCceEEEEECCCCCccc-----c-ccCc----cceeEEecCC-eEEEEEeCCCCCCeEEEEECCC
Q 044808 155 FKVSPNNKLVAFR-ENCGTVCVIDSETGAPAE-----K-PIQG----CLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGE 222 (623)
Q Consensus 155 ~~~SPDG~~lA~~-~~~~~l~v~dl~tg~~~~-----~-~i~~----~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt 222 (623)
+.|++.-+-...+ .+..+|++||+....... . .+.+ +..++|.+-. .+|-...++. .+.++++.+
T Consensus 183 lsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~---~L~iwD~R~ 259 (422)
T KOG0264|consen 183 LSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG---KLMIWDTRS 259 (422)
T ss_pred cccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC---eEEEEEcCC
Confidence 4666665532222 233389999997654311 1 1111 1238898877 4444433322 577888775
Q ss_pred CCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-ceeecCCCcccee-EEEEeeCCEEEE-Ee
Q 044808 223 EQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-TLWFLPPWHLGID-MFVSHRGNQFFI-RR 299 (623)
Q Consensus 223 ~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l~~~~~~~~-~~~~~dg~~ly~-sn 299 (623)
.+.+...... ....=.-.+++.|-+.+|+.+.+ ....|.+.|+.+.. .+..+....+.+. ..|+|+.+.++. +.
T Consensus 260 ~~~~~~~~~~-ah~~~vn~~~fnp~~~~ilAT~S--~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg 336 (422)
T KOG0264|consen 260 NTSKPSHSVK-AHSAEVNCVAFNPFNEFILATGS--ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG 336 (422)
T ss_pred CCCCCccccc-ccCCceeEEEeCCCCCceEEecc--CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc
Confidence 3222222222 11111234678898888876443 34678889988765 3444444444433 468999998888 66
Q ss_pred CCCCCCeEEEEEeCCCCC-----------ceeeEEcCCC-CceEeEEEEeC--CEEEEEEeeCCcceEEEEECC
Q 044808 300 SDGGFHSDVLTCPVDNTF-----------ETTVLIPHRE-RVRVEEVRLFA--DHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 300 ~~g~~~~~L~~~d~~~~~-----------~~~~li~~~~-d~~i~~~~~~~--~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
.+ .+|...|+..-+ +...++.|.. -..|.+++|.. -.++.+..+++. |.++...
T Consensus 337 ~D----~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~--LqIW~~s 404 (422)
T KOG0264|consen 337 TD----RRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNI--LQIWQMA 404 (422)
T ss_pred cC----CcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCce--EEEeecc
Confidence 55 356666654311 1122333332 23466777664 467777777765 4444444
No 334
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=92.12 E-value=0.84 Score=49.27 Aligned_cols=135 Identities=13% Similarity=0.091 Sum_probs=74.3
Q ss_pred CCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCC--------CC------CCc-----hhhhHHHHHCCcEEEEEecc
Q 044808 451 GEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPS--------SY------SNS-----IASRLTILDRGIIFAIAHVR 511 (623)
Q Consensus 451 G~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~--------~~------~~~-----~~~~~~~~~~G~~v~~~~~R 511 (623)
|..+.-|.+...+ + ....|+||+.-||||.+.. |- +.. ......|.+.. -++.+|.=
T Consensus 49 ~~~lfy~f~es~~--~-~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~a-nllfiDqP 124 (433)
T PLN03016 49 NVQFFYYFIKSEN--N-PKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKMA-NIIFLDQP 124 (433)
T ss_pred CeEEEEEEEecCC--C-cccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhcC-cEEEecCC
Confidence 4556666444332 2 3467999999999996631 21 000 01223455543 45556633
Q ss_pred CCCcCChhHHHcccccCC-CchHhHHHHHHH-HHHHcCCCCCCcEEEEEeChHHHHHHHH----HHhC-----CC-eeeE
Q 044808 512 GGDEKGKQWHENGKLLNK-RNTFTDFIACAD-YLIKSNYCSEDNLCIEGGSAGGMLIGAV----LNMR-----PE-LFKV 579 (623)
Q Consensus 512 G~~~~G~~~~~~~~~~~~-~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~l~~~~----~~~~-----p~-~f~a 579 (623)
-|.||... ........ ..+.+|+..+++ |+.+.+---...+.|.|.||||..+-.+ +... +. -+|.
T Consensus 125 vGtGfSy~--~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~i~~~n~~~~~~~inLkG 202 (433)
T PLN03016 125 VGSGFSYS--KTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQEISQGNYICCEPPINLQG 202 (433)
T ss_pred CCCCccCC--CCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHHHHhhcccccCCccccee
Confidence 33344311 11111111 123356766555 5656665556789999999999754333 2221 11 4789
Q ss_pred EEecCCccchhh
Q 044808 580 AVADVPSVDVLT 591 (623)
Q Consensus 580 ~v~~~~~~d~~~ 591 (623)
++.+.|++|...
T Consensus 203 i~iGNg~t~~~~ 214 (433)
T PLN03016 203 YMLGNPVTYMDF 214 (433)
T ss_pred eEecCCCcCchh
Confidence 999999998863
No 335
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=91.92 E-value=2.5 Score=43.79 Aligned_cols=186 Identities=11% Similarity=0.098 Sum_probs=97.9
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc---ccCccceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCccc
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK---PIQGCLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSKD 227 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~---~i~~~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~d 227 (623)
.+..+.||+||.++.-+...+.|.+|++.-..+... .-+.+..+++||.+.-|.+..|+. .|.+++---+.++.
T Consensus 140 ~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg---~ikiWdf~~~kee~ 216 (464)
T KOG0284|consen 140 PVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDG---TIKIWDFRMPKEER 216 (464)
T ss_pred cceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCC---eEEEEeccCCchhh
Confidence 577899999999988776666899998765433211 112344699999774444554432 24444443333233
Q ss_pred EEEEeecCCceeE-EEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcccee-EEEEeeCCEEEEEeCCCCCC
Q 044808 228 TCLYRTREDLFDL-TLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGID-MFVSHRGNQFFIRRSDGGFH 305 (623)
Q Consensus 228 ~lv~~~~~~~~~~-~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~-~~~~~dg~~ly~sn~~g~~~ 305 (623)
+ + .. ..+.+ .+.|.|.-..|+. .+++ +-|-+.|..++..+-.+...+.-+. ..|.+++..|+-..++
T Consensus 217 v-L-~G--HgwdVksvdWHP~kgLias--gskD-nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD---- 285 (464)
T KOG0284|consen 217 V-L-RG--HGWDVKSVDWHPTKGLIAS--GSKD-NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKD---- 285 (464)
T ss_pred e-e-cc--CCCCcceeccCCccceeEE--ccCC-ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCC----
Confidence 3 3 22 23444 5778997766543 3322 3677788877762222333333222 3577877554443333
Q ss_pred eEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCc
Q 044808 306 SDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGL 350 (623)
Q Consensus 306 ~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~ 350 (623)
..+-.+|+..-+.-...-.+..++.-..+.+....|+.+.--+|.
T Consensus 286 ~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 286 QSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred ceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCc
Confidence 134455654221101022233343222234445667666665654
No 336
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=91.80 E-value=3.1 Score=41.26 Aligned_cols=113 Identities=13% Similarity=0.223 Sum_probs=72.1
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCc-cccc-c----C---ccceeEEec--CCeEEEEEeCCCCCCeEEEEE
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAP-AEKP-I----Q---GCLEFEWAG--DEAFLYTRRNAIAEPQVWFHK 219 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~-~~~~-i----~---~~~~~~Wsp--Dg~l~y~~~d~~~~~~v~~~~ 219 (623)
.+..+.|-||+.+||-..+. +|.+|+++.+.. +++. . . ...+-+|+| ||.-+-+..+. .++.++
T Consensus 125 ~i~cvew~Pns~klasm~dn-~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~----tl~~~D 199 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMDDN-NIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDS----TLQFWD 199 (370)
T ss_pred ceeeEEEcCCCCeeEEeccC-ceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCC----cEEEEE
Confidence 46788999999999988765 799999987765 3321 1 1 112478998 55333344333 477888
Q ss_pred CCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC
Q 044808 220 LGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE 272 (623)
Q Consensus 220 lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~ 272 (623)
+.|... ..-.+..+.....++.+.|+.++++++..+ ..-|.+.|....+
T Consensus 200 ~RT~~~--~~sI~dAHgq~vrdlDfNpnkq~~lvt~gD--dgyvriWD~R~tk 248 (370)
T KOG1007|consen 200 LRTMKK--NNSIEDAHGQRVRDLDFNPNKQHILVTCGD--DGYVRIWDTRKTK 248 (370)
T ss_pred ccchhh--hcchhhhhcceeeeccCCCCceEEEEEcCC--CccEEEEeccCCC
Confidence 876432 222333344445567789999998875443 4556667776654
No 337
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=91.72 E-value=3.6 Score=41.03 Aligned_cols=58 Identities=28% Similarity=0.427 Sum_probs=38.8
Q ss_pred EEeeeEECCCCCEEEEEEeCc---eEEEEECC---CC--Ccccc--c-----cCccceeEEecCCeEEEEEeC
Q 044808 151 RITAFKVSPNNKLVAFRENCG---TVCVIDSE---TG--APAEK--P-----IQGCLEFEWAGDEAFLYTRRN 208 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~---~l~v~dl~---tg--~~~~~--~-----i~~~~~~~WspDg~l~y~~~d 208 (623)
.|..+++||||.++|+....+ +|+|--+. .| ..+.. . ...+..+.|.++++|++....
T Consensus 113 ~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 113 RITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRS 185 (253)
T ss_pred ceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCC
Confidence 688999999999999998543 67766543 33 11111 1 112345999999988777643
No 338
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=91.64 E-value=1.5 Score=40.93 Aligned_cols=37 Identities=14% Similarity=-0.011 Sum_probs=30.8
Q ss_pred CcEEEEEeChHHHHHHHHH-HhCCCeeeEEEecCCccc
Q 044808 552 DNLCIEGGSAGGMLIGAVL-NMRPELFKVAVADVPSVD 588 (623)
Q Consensus 552 ~ri~i~G~S~GG~l~~~~~-~~~p~~f~a~v~~~~~~d 588 (623)
+.+.+.|+|.|+.+++..+ .+.....++++..+|+-.
T Consensus 55 ~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~lLVAp~~~ 92 (171)
T PF06821_consen 55 EPTILVAHSLGCLTALRWLAEQSQKKVAGALLVAPFDP 92 (171)
T ss_dssp TTEEEEEETHHHHHHHHHHHHTCCSSEEEEEEES--SC
T ss_pred CCeEEEEeCHHHHHHHHHHhhcccccccEEEEEcCCCc
Confidence 4599999999999999888 777788999999999853
No 339
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=91.23 E-value=9.1 Score=40.84 Aligned_cols=131 Identities=12% Similarity=0.204 Sum_probs=79.0
Q ss_pred EeeeEECCCCCEEEEEEeCceEEEEECCCCCcc-ccccC----ccceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcc
Q 044808 152 ITAFKVSPNNKLVAFRENCGTVCVIDSETGAPA-EKPIQ----GCLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSK 226 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~-~~~i~----~~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~ 226 (623)
|....++|||+.|..+-...+|-||||++-... ..+++ .|..++-+||.++.|....+. .|.+++|-..
T Consensus 468 iRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdG---nI~vwDLhnq--- 541 (705)
T KOG0639|consen 468 IRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDG---NIAVWDLHNQ--- 541 (705)
T ss_pred eeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCC---cEEEEEcccc---
Confidence 556789999999988866559999999875432 22333 344588899999888875321 4677777542
Q ss_pred cEEEEe--e-cCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccc-eeEE--EEeeCCEEEE
Q 044808 227 DTCLYR--T-REDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLG-IDMF--VSHRGNQFFI 297 (623)
Q Consensus 227 d~lv~~--~-~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~-~~~~--~~~dg~~ly~ 297 (623)
++|-+ . .|. ..-+.+|+||..|.- ..-.+.|.-.|+..+. .+....-. ..++ -.|.++++.+
T Consensus 542 -~~VrqfqGhtDG--ascIdis~dGtklWT---GGlDntvRcWDlregr---qlqqhdF~SQIfSLg~cP~~dWlav 609 (705)
T KOG0639|consen 542 -TLVRQFQGHTDG--ASCIDISKDGTKLWT---GGLDNTVRCWDLREGR---QLQQHDFSSQIFSLGYCPTGDWLAV 609 (705)
T ss_pred -eeeecccCCCCC--ceeEEecCCCceeec---CCCccceeehhhhhhh---hhhhhhhhhhheecccCCCccceee
Confidence 33322 1 222 223567999987642 2234667777777653 22211100 0112 3477888887
No 340
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=91.22 E-value=4.9 Score=41.33 Aligned_cols=112 Identities=12% Similarity=0.068 Sum_probs=69.2
Q ss_pred cEEEeeeEECCCCCEEEEEEeCc-eEEEEECCCCCccccccCccc--eeEEecCCeEEEEEeCCCCCCeEEEEECCCCCc
Q 044808 149 NYRITAFKVSPNNKLVAFRENCG-TVCVIDSETGAPAEKPIQGCL--EFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 149 ~~~l~~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~~~i~~~~--~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~ 225 (623)
.-.++.+.|++ .-.+|+.+-. +|.+||+++|........+.. .+.-+|...++....-+ + .+.+|+..++..
T Consensus 260 t~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssd--r-~irl~DPR~~~g 334 (423)
T KOG0313|consen 260 TEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSD--R-HIRLWDPRTGDG 334 (423)
T ss_pred ccceeeEEEcC--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCC--C-ceeecCCCCCCC
Confidence 34678899999 4477877666 999999999987653333322 37778877655543211 1 466666665532
Q ss_pred ccEEEEee-cCCceeEEEEEcCCCcEEEEEeecceeeEEEEE
Q 044808 226 KDTCLYRT-REDLFDLTLEASESKKFLFVKSKTKVTGFVYYF 266 (623)
Q Consensus 226 ~d~lv~~~-~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~ 266 (623)
....+.- .+..|.-++.|+|-..++++..+..++..+|=+
T Consensus 335 -s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDv 375 (423)
T KOG0313|consen 335 -SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDV 375 (423)
T ss_pred -ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEe
Confidence 1222211 223366678999999999886554444555533
No 341
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=91.17 E-value=1 Score=47.44 Aligned_cols=148 Identities=11% Similarity=0.070 Sum_probs=87.4
Q ss_pred EEeeeEECC-CCCEEEEEEeCceEEEEECCC-CCccccccC----ccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCC
Q 044808 151 RITAFKVSP-NNKLVAFRENCGTVCVIDSET-GAPAEKPIQ----GCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEE 223 (623)
Q Consensus 151 ~l~~~~~SP-DG~~lA~~~~~~~l~v~dl~t-g~~~~~~i~----~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~ 223 (623)
-++.++|.| -|.+|+-+.-...|+||++-. ++.+. +.- .+..+.|+++| +|+-..+|. .|.++++.|+
T Consensus 216 gvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr-tf~gH~k~Vrd~~~s~~g~~fLS~sfD~----~lKlwDtETG 290 (503)
T KOG0282|consen 216 GVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR-TFKGHRKPVRDASFNNCGTSFLSASFDR----FLKLWDTETG 290 (503)
T ss_pred ccchhhhccceeeEEEecCCCceEEEEEEecCcceeh-hhhcchhhhhhhhccccCCeeeeeecce----eeeeeccccc
Confidence 467789999 777766665444899999876 55444 222 23459999999 677666664 3677888888
Q ss_pred CcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcccee--EEEEeeCCEEEEEeCC
Q 044808 224 QSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGID--MFVSHRGNQFFIRRSD 301 (623)
Q Consensus 224 ~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~--~~~~~dg~~ly~sn~~ 301 (623)
+. ..-|......+. +.+.||+..+|+.-. ....|...|..+++ +..-..+.-+.. ..|-++|.+|+-|..+
T Consensus 291 ~~--~~~f~~~~~~~c--vkf~pd~~n~fl~G~--sd~ki~~wDiRs~k-vvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 291 QV--LSRFHLDKVPTC--VKFHPDNQNIFLVGG--SDKKIRQWDIRSGK-VVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred eE--EEEEecCCCcee--eecCCCCCcEEEEec--CCCcEEEEeccchH-HHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 43 233443322222 457899977776433 23578888988875 211112222211 1344566665553333
Q ss_pred CCCCeEEEEEe
Q 044808 302 GGFHSDVLTCP 312 (623)
Q Consensus 302 g~~~~~L~~~d 312 (623)
.+.+|+...
T Consensus 364 --ks~riWe~~ 372 (503)
T KOG0282|consen 364 --KSVRIWENR 372 (503)
T ss_pred --ccEEEEEcC
Confidence 256666544
No 342
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=91.07 E-value=23 Score=37.45 Aligned_cols=57 Identities=16% Similarity=0.193 Sum_probs=40.1
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCc----cceeEEecCC-eEEEEEeC
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQG----CLEFEWAGDE-AFLYTRRN 208 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~----~~~~~WspDg-~l~y~~~d 208 (623)
.+-.+++||||++||++--...|.|||..|++.+.. +.+ +.+++|-..- .+|-...|
T Consensus 204 eil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~-~~ghr~~V~~L~fr~gt~~lys~s~D 265 (479)
T KOG0299|consen 204 EILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKV-FKGHRGAVSSLAFRKGTSELYSASAD 265 (479)
T ss_pred eeEEEEEcCCCcEEEecCCCceEEEecCcccchhhc-ccccccceeeeeeecCccceeeeecC
Confidence 345689999999999996555889999999998763 332 2346764433 56655554
No 343
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=91.00 E-value=22 Score=37.00 Aligned_cols=110 Identities=14% Similarity=0.141 Sum_probs=69.2
Q ss_pred eeeEECCCCCE-EEEEEeCceEEEEECCCCCcccc------ccCcc---ce-eEEecCC-eEEEEEeCCCCCCeEEEEEC
Q 044808 153 TAFKVSPNNKL-VAFRENCGTVCVIDSETGAPAEK------PIQGC---LE-FEWAGDE-AFLYTRRNAIAEPQVWFHKL 220 (623)
Q Consensus 153 ~~~~~SPDG~~-lA~~~~~~~l~v~dl~tg~~~~~------~i~~~---~~-~~WspDg-~l~y~~~d~~~~~~v~~~~l 220 (623)
-...|.|=+.. ||-+++..+|.||++-.+-...+ .+.+- -+ ++|-|-- -++.+..-+ ..|..+++
T Consensus 85 LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D---n~v~iWnv 161 (472)
T KOG0303|consen 85 LDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD---NTVSIWNV 161 (472)
T ss_pred cccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC---ceEEEEec
Confidence 34577775554 55544444899998765433221 12221 14 8998876 555554321 17899999
Q ss_pred CCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC
Q 044808 221 GEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE 272 (623)
Q Consensus 221 gt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~ 272 (623)
||+.+ .+ .-.++....+++|+.||.+++-+.. ...|.++|..+++
T Consensus 162 ~tgea--li--~l~hpd~i~S~sfn~dGs~l~Ttck---DKkvRv~dpr~~~ 206 (472)
T KOG0303|consen 162 GTGEA--LI--TLDHPDMVYSMSFNRDGSLLCTTCK---DKKVRVIDPRRGT 206 (472)
T ss_pred cCCce--ee--ecCCCCeEEEEEeccCCceeeeecc---cceeEEEcCCCCc
Confidence 99842 22 2236667788899999998764333 3578889988876
No 344
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=90.81 E-value=19 Score=36.05 Aligned_cols=113 Identities=12% Similarity=0.097 Sum_probs=66.2
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCccc----eeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcc
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQGCL----EFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSK 226 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~~~----~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~ 226 (623)
.|-...|+|||..+|-+-...+|++|++-....---.+.+.+ ++.|..|+..+++...++ +|+.+++.+++.
T Consensus 49 eI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk---~v~~wD~~tG~~- 124 (338)
T KOG0265|consen 49 EIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDK---TVRGWDAETGKR- 124 (338)
T ss_pred eEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCc---eEEEEeccccee-
Confidence 466789999999999886555899999765432111233332 489999996666654332 588899988743
Q ss_pred cEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCC
Q 044808 227 DTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRP 271 (623)
Q Consensus 227 d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~ 271 (623)
..-+. .+..|.-.+..+.-|..++.+.+.. ..+.+.|....
T Consensus 125 -~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD--~t~kl~D~R~k 165 (338)
T KOG0265|consen 125 -IRKHK-GHTSFVNSLDPSRRGPQLVCSGSDD--GTLKLWDIRKK 165 (338)
T ss_pred -eehhc-cccceeeecCccccCCeEEEecCCC--ceEEEEeeccc
Confidence 11222 2233433334445555555433333 34445565543
No 345
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=90.79 E-value=10 Score=42.26 Aligned_cols=153 Identities=14% Similarity=0.064 Sum_probs=78.7
Q ss_pred EEEeeeEECCCCCEEEEEEeCceEEEEECCCCCc-cccccC----ccceeEEecCCeEEEEEeCCCCCCeEEEEECCCCC
Q 044808 150 YRITAFKVSPNNKLVAFRENCGTVCVIDSETGAP-AEKPIQ----GCLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQ 224 (623)
Q Consensus 150 ~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~-~~~~i~----~~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~ 224 (623)
+.=+.++||++|+.|+-.... .|.+.|++||.. ++-... .+..++-+||+..+|+.... + .+..+.+.++.
T Consensus 20 YtGG~~~~s~nG~~L~t~~~d-~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs--~-llrv~~L~tgk 95 (775)
T KOG0319|consen 20 YTGGPVAWSSNGQHLYTACGD-RVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRS--Q-LLRVWSLPTGK 95 (775)
T ss_pred ecCCceeECCCCCEEEEecCc-eEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeecc--c-eEEEEEcccch
Confidence 333458999999999888755 699999999998 432111 12348889999544444321 1 34445555542
Q ss_pred cccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeEE--EEeeCCE-EEEEeCC
Q 044808 225 SKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDMF--VSHRGNQ-FFIRRSD 301 (623)
Q Consensus 225 ~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~~--~~~dg~~-ly~sn~~ 301 (623)
.-+.+......| .+..++.|.| .|+- ..+....+-+.|...+. ..--+....|+-.. |-++-.. ++++.
T Consensus 96 ~irswKa~He~P--vi~ma~~~~g-~LlA--tggaD~~v~VWdi~~~~-~th~fkG~gGvVssl~F~~~~~~~lL~sg-- 167 (775)
T KOG0319|consen 96 LIRSWKAIHEAP--VITMAFDPTG-TLLA--TGGADGRVKVWDIKNGY-CTHSFKGHGGVVSSLLFHPHWNRWLLASG-- 167 (775)
T ss_pred HhHhHhhccCCC--eEEEEEcCCC-ceEE--eccccceEEEEEeeCCE-EEEEecCCCceEEEEEeCCccchhheeec--
Confidence 212221111223 3445677888 3332 22233456666666554 21122333344333 2222222 22233
Q ss_pred CCCCeEEEEEeCCC
Q 044808 302 GGFHSDVLTCPVDN 315 (623)
Q Consensus 302 g~~~~~L~~~d~~~ 315 (623)
+++..+..+++..
T Consensus 168 -~~D~~v~vwnl~~ 180 (775)
T KOG0319|consen 168 -ATDGTVRVWNLND 180 (775)
T ss_pred -CCCceEEEEEccc
Confidence 2345677777654
No 346
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=90.66 E-value=0.66 Score=47.06 Aligned_cols=98 Identities=18% Similarity=0.110 Sum_probs=58.2
Q ss_pred CCccEEEEEcCCCCCCCCCCCCchhhhHHHHHC-CcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcC
Q 044808 469 GSDPLLLFGYGSYGLGPSSYSNSIASRLTILDR-GIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSN 547 (623)
Q Consensus 469 ~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~-G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 547 (623)
.+.|.++.+||=.|+. ..|. .-...|... |--|..+|+|-=|.. -+-. ...+....+|+..-+++...+.
T Consensus 50 ~~~Pp~i~lHGl~GS~--~Nw~--sv~k~Ls~~l~~~v~~vd~RnHG~S---p~~~--~h~~~~ma~dv~~Fi~~v~~~~ 120 (315)
T KOG2382|consen 50 ERAPPAIILHGLLGSK--ENWR--SVAKNLSRKLGRDVYAVDVRNHGSS---PKIT--VHNYEAMAEDVKLFIDGVGGST 120 (315)
T ss_pred CCCCceEEecccccCC--CCHH--HHHHHhcccccCceEEEecccCCCC---cccc--ccCHHHHHHHHHHHHHHccccc
Confidence 4678888999977766 2343 333444443 667888888853332 1111 2224445556555555554443
Q ss_pred CCCCCcEEEEEeChHH-HHHHHHHHhCCCee
Q 044808 548 YCSEDNLCIEGGSAGG-MLIGAVLNMRPELF 577 (623)
Q Consensus 548 ~~d~~ri~i~G~S~GG-~l~~~~~~~~p~~f 577 (623)
. -.++.+.|+|+|| -++++.....|++-
T Consensus 121 ~--~~~~~l~GHsmGG~~~~m~~t~~~p~~~ 149 (315)
T KOG2382|consen 121 R--LDPVVLLGHSMGGVKVAMAETLKKPDLI 149 (315)
T ss_pred c--cCCceecccCcchHHHHHHHHHhcCccc
Confidence 3 3589999999999 44444444567753
No 347
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=90.52 E-value=1.6 Score=42.76 Aligned_cols=102 Identities=14% Similarity=0.018 Sum_probs=66.8
Q ss_pred EEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhH
Q 044808 456 ISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTD 535 (623)
Q Consensus 456 ~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D 535 (623)
.|++.|+. .-.||+.-||.-....|.-.++.-...|+++||+|++.-|.=+ + +..... ......
T Consensus 8 ~wvl~P~~-------P~gvihFiGGaf~ga~P~itYr~lLe~La~~Gy~ViAtPy~~t--f--DH~~~A-----~~~~~~ 71 (250)
T PF07082_consen 8 SWVLIPPR-------PKGVIHFIGGAFVGAAPQITYRYLLERLADRGYAVIATPYVVT--F--DHQAIA-----REVWER 71 (250)
T ss_pred cEEEeCCC-------CCEEEEEcCcceeccCcHHHHHHHHHHHHhCCcEEEEEecCCC--C--cHHHHH-----HHHHHH
Confidence 36666652 2278888888555555665533666788999999999988743 2 211111 133455
Q ss_pred HHHHHHHHHHcCCCCCC--cEEEEEeChHHHHHHHHHHhC
Q 044808 536 FIACADYLIKSNYCSED--NLCIEGGSAGGMLIGAVLNMR 573 (623)
Q Consensus 536 ~~~~~~~l~~~~~~d~~--ri~i~G~S~GG~l~~~~~~~~ 573 (623)
+..|++.|.+.+-.++. -+.-.|||.|.-+-+.+....
T Consensus 72 f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~ 111 (250)
T PF07082_consen 72 FERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLF 111 (250)
T ss_pred HHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhc
Confidence 66788888887655544 466689999999987665443
No 348
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.36 E-value=2.4 Score=49.23 Aligned_cols=178 Identities=12% Similarity=0.106 Sum_probs=105.9
Q ss_pred CceEEeechhhcccCC--------CCcEEEeeeEECCCCC-EEEEEEeCceEEEEECCCCCcc--c---cccCccceeEE
Q 044808 131 PEEVIIDEEVIKYKNS--------LENYRITAFKVSPNNK-LVAFRENCGTVCVIDSETGAPA--E---KPIQGCLEFEW 196 (623)
Q Consensus 131 ~~~vllD~n~~a~~~~--------~~~~~l~~~~~SPDG~-~lA~~~~~~~l~v~dl~tg~~~--~---~~i~~~~~~~W 196 (623)
+--+|.|++.+.++.+ .-.-.|..+.|+|.+. +||-+.+.+.|+|||+..-+.- . ...+++..++|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW 169 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW 169 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence 3467888888632211 1122456699999998 9999988889999999863311 0 01224455888
Q ss_pred ecCC-eEEEEEeCCCCCCeEEEEECCCCCcccEEEEeecCCce-eEEEEEcCCCcEEEEEeecc-eeeEEEEEECCCCC-
Q 044808 197 AGDE-AFLYTRRNAIAEPQVWFHKLGEEQSKDTCLYRTREDLF-DLTLEASESKKFLFVKSKTK-VTGFVYYFDVSRPE- 272 (623)
Q Consensus 197 spDg-~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~~~~~~~~-~~~~~~S~Dg~~l~i~s~~~-~~s~l~~~dl~~~~- 272 (623)
...- +++-... .++ ++..+++... +.++-+.+...+. ...+.|.||+..-++.++.. ....|-+.|+....
T Consensus 170 NrkvqhILAS~s-~sg--~~~iWDlr~~--~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass 244 (1049)
T KOG0307|consen 170 NRKVSHILASGS-PSG--RAVIWDLRKK--KPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS 244 (1049)
T ss_pred chhhhHHhhccC-CCC--CceeccccCC--CcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence 5544 4433222 222 3455666544 2233333222222 34678999997666555443 33456667766544
Q ss_pred ceeecCCCccceeE-EEEeeCCEEEE-EeCCCCCCeEEEEEeCCCCC
Q 044808 273 TLWFLPPWHLGIDM-FVSHRGNQFFI-RRSDGGFHSDVLTCPVDNTF 317 (623)
Q Consensus 273 ~~~~l~~~~~~~~~-~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~ 317 (623)
..+.+..+..|+.. .|.+.+.++++ +-++ .+++..+.++++
T Consensus 245 P~k~~~~H~~GilslsWc~~D~~lllSsgkD----~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 245 PLKILEGHQRGILSLSWCPQDPRLLLSSGKD----NRIICWNPNTGE 287 (1049)
T ss_pred chhhhcccccceeeeccCCCCchhhhcccCC----CCeeEecCCCce
Confidence 45555566666543 68888888888 7766 467777776653
No 349
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=90.10 E-value=3.2 Score=41.86 Aligned_cols=100 Identities=12% Similarity=0.169 Sum_probs=70.9
Q ss_pred CcEEEeeeEECCCCCEEEEEEeCc--eEEEEECCCCCcccc--ccCccceeEEecCC-eEEEEEeCCCCCCeEEEEECCC
Q 044808 148 ENYRITAFKVSPNNKLVAFRENCG--TVCVIDSETGAPAEK--PIQGCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGE 222 (623)
Q Consensus 148 ~~~~l~~~~~SPDG~~lA~~~~~~--~l~v~dl~tg~~~~~--~i~~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt 222 (623)
.+..++.++||+|..++|--.|.- .+++||+..-+.-.- ....+..+.|.|.- +++..+.. .++|++....
T Consensus 317 Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~----srLY~W~psg 392 (447)
T KOG4497|consen 317 PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGK----SRLYFWAPSG 392 (447)
T ss_pred cccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCC----ceEEEEcCCC
Confidence 356678899999999988776554 899999987664331 23455679999988 88776532 2799988754
Q ss_pred CCcccEEEEeecCCceeE-EEEEcCCCcEEEEEee
Q 044808 223 EQSKDTCLYRTREDLFDL-TLEASESKKFLFVKSK 256 (623)
Q Consensus 223 ~~~~d~lv~~~~~~~~~~-~~~~S~Dg~~l~i~s~ 256 (623)
. . +...+.++|.+ .+.|.-+|..+++-..
T Consensus 393 ~----~-~V~vP~~GF~i~~l~W~~~g~~i~l~~k 422 (447)
T KOG4497|consen 393 P----R-VVGVPKKGFNIQKLQWLQPGEFIVLCGK 422 (447)
T ss_pred c----e-EEecCCCCceeeeEEecCCCcEEEEEcC
Confidence 2 2 33445566765 5789999999887543
No 350
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=89.90 E-value=1.3 Score=49.67 Aligned_cols=74 Identities=15% Similarity=0.132 Sum_probs=52.5
Q ss_pred eEEEEECCCCCccccccC----ccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCcccEEEEeecCCceeEEEEEcC
Q 044808 172 TVCVIDSETGAPAEKPIQ----GCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQSKDTCLYRTREDLFDLTLEASE 246 (623)
Q Consensus 172 ~l~v~dl~tg~~~~~~i~----~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~ 246 (623)
.|.|+|..|-+++.+ +. .+..++||||| .++-...|. .|..+++-|+..-|.++++. + ..++++||
T Consensus 557 ~I~vvD~~t~kvvR~-f~gh~nritd~~FS~DgrWlisasmD~----tIr~wDlpt~~lID~~~vd~--~--~~sls~SP 627 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVRE-FWGHGNRITDMTFSPDGRWLISASMDS----TIRTWDLPTGTLIDGLLVDS--P--CTSLSFSP 627 (910)
T ss_pred eEEEEEchhhhhhHH-hhccccceeeeEeCCCCcEEEEeecCC----cEEEEeccCcceeeeEecCC--c--ceeeEECC
Confidence 899999999887763 22 23459999999 565555554 48889998886555555432 2 35678999
Q ss_pred CCcEEEEE
Q 044808 247 SKKFLFVK 254 (623)
Q Consensus 247 Dg~~l~i~ 254 (623)
.|.+|+-.
T Consensus 628 ngD~LAT~ 635 (910)
T KOG1539|consen 628 NGDFLATV 635 (910)
T ss_pred CCCEEEEE
Confidence 99998753
No 351
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=89.63 E-value=1.6 Score=45.12 Aligned_cols=98 Identities=15% Similarity=0.105 Sum_probs=63.0
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc-ccCcc-----ce-eEEecCCe-EEEEEeCCCCCCeEEEEECCC
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK-PIQGC-----LE-FEWAGDEA-FLYTRRNAIAEPQVWFHKLGE 222 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~-~i~~~-----~~-~~WspDg~-l~y~~~d~~~~~~v~~~~lgt 222 (623)
.+.++.+|+||..|.-.....++.++|+.+.++... .-++. +. +.||||+. ++-...+. .||++++.+
T Consensus 343 ~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dg----sv~iW~v~t 418 (459)
T KOG0288|consen 343 RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADG----SVYIWSVFT 418 (459)
T ss_pred ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCC----cEEEEEccC
Confidence 577899999999866554333899999998876541 11111 23 89999995 43333332 589999988
Q ss_pred CCcccEEEEeecCCceeEEEEEcCCCcEEEE
Q 044808 223 EQSKDTCLYRTREDLFDLTLEASESKKFLFV 253 (623)
Q Consensus 223 ~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i 253 (623)
+..+-++-....++ -...++|+|.|++|+-
T Consensus 419 gKlE~~l~~s~s~~-aI~s~~W~~sG~~Lls 448 (459)
T KOG0288|consen 419 GKLEKVLSLSTSNA-AITSLSWNPSGSGLLS 448 (459)
T ss_pred ceEEEEeccCCCCc-ceEEEEEcCCCchhhc
Confidence 75433222222222 2456789999999764
No 352
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=89.41 E-value=0.45 Score=49.00 Aligned_cols=52 Identities=21% Similarity=0.277 Sum_probs=39.9
Q ss_pred EeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc---ccCc--cceeEEecCC-eEE
Q 044808 152 ITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK---PIQG--CLEFEWAGDE-AFL 203 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~---~i~~--~~~~~WspDg-~l~ 203 (623)
.+...|||||+|+|-+...+.||||++.+|+.... .-.+ +.+++|.|-| .++
T Consensus 390 wtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Ll 447 (459)
T KOG0288|consen 390 WTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLL 447 (459)
T ss_pred cceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhh
Confidence 45679999999999998888999999999986431 1112 3459999988 444
No 353
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.20 E-value=26 Score=35.21 Aligned_cols=169 Identities=15% Similarity=0.195 Sum_probs=91.8
Q ss_pred ceEEeechhhcccCCCCcEEEeeeEECCCCCEEEEEEeCc-eEEEEECCCCCccc-cccCccc---eeEEecCCeEEEEE
Q 044808 132 EEVIIDEEVIKYKNSLENYRITAFKVSPNNKLVAFRENCG-TVCVIDSETGAPAE-KPIQGCL---EFEWAGDEAFLYTR 206 (623)
Q Consensus 132 ~~vllD~n~~a~~~~~~~~~l~~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~-~~i~~~~---~~~WspDg~l~y~~ 206 (623)
-.+.+|...+.. ...-++++.|+||-+.|--+.+.. .|.-++.+ |+.+. .++++.. +++|..+|.|+.+.
T Consensus 72 y~~~i~akpi~g----~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~-GdlirtiPL~g~~DpE~Ieyig~n~fvi~d 146 (316)
T COG3204 72 YRARIDAKPILG----ETANVSSLTYNPDTRTLFAVTNKPAAIVELTKE-GDLIRTIPLTGFSDPETIEYIGGNQFVIVD 146 (316)
T ss_pred ceEEEecccccc----ccccccceeeCCCcceEEEecCCCceEEEEecC-CceEEEecccccCChhHeEEecCCEEEEEe
Confidence 345565553332 223488999999999987776665 77767664 55544 2344443 49999988877664
Q ss_pred eCCCCCC-eEEEEECCCCCc----cc-EEEEeec---CCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-ceee
Q 044808 207 RNAIAEP-QVWFHKLGEEQS----KD-TCLYRTR---EDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-TLWF 276 (623)
Q Consensus 207 ~d~~~~~-~v~~~~lgt~~~----~d-~lv~~~~---~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~~~~ 276 (623)
. |. ++|.+.+..+.. +. .+-.+.. +-+ +=+++|+|..+.+++ +..+.-..||.++..... ....
T Consensus 147 E----R~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~G-fEGlA~d~~~~~l~~-aKEr~P~~I~~~~~~~~~l~~~~ 220 (316)
T COG3204 147 E----RDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKG-FEGLAWDPVDHRLFV-AKERNPIGIFEVTQSPSSLSVHA 220 (316)
T ss_pred h----hcceEEEEEEcCCccEEeccceEEeccccCCCCcC-ceeeecCCCCceEEE-EEccCCcEEEEEecCCccccccc
Confidence 3 23 566666654311 11 1111111 112 236789998888776 444444677777643211 1111
Q ss_pred -cCCCcc-ce------eEEEEeeCCEEEE-EeCCCCCCeEEEEEeCCC
Q 044808 277 -LPPWHL-GI------DMFVSHRGNQFFI-RRSDGGFHSDVLTCPVDN 315 (623)
Q Consensus 277 -l~~~~~-~~------~~~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~ 315 (623)
..+... .. ...+.+..++|++ |+.. ..|..++.+.
T Consensus 221 ~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ES----r~l~Evd~~G 264 (316)
T COG3204 221 SLDPTADRDLFVLDVSGLEFNAITNSLLVLSDES----RRLLEVDLSG 264 (316)
T ss_pred ccCcccccceEeeccccceecCCCCcEEEEecCC----ceEEEEecCC
Confidence 111111 00 0124445677888 7765 3577776654
No 354
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=89.14 E-value=1.1 Score=43.58 Aligned_cols=84 Identities=15% Similarity=0.057 Sum_probs=46.7
Q ss_pred EEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHH-HHHHHHcCCCCC
Q 044808 473 LLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIAC-ADYLIKSNYCSE 551 (623)
Q Consensus 473 ~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~-~~~l~~~~~~d~ 551 (623)
.|+.+|++-|.. ..|. .....+-+.++.|..+...|-+. ......+++++++. ++.+.+.. ..
T Consensus 2 ~lf~~p~~gG~~--~~y~--~la~~l~~~~~~v~~i~~~~~~~----------~~~~~~si~~la~~y~~~I~~~~--~~ 65 (229)
T PF00975_consen 2 PLFCFPPAGGSA--SSYR--PLARALPDDVIGVYGIEYPGRGD----------DEPPPDSIEELASRYAEAIRARQ--PE 65 (229)
T ss_dssp EEEEESSTTCSG--GGGH--HHHHHHTTTEEEEEEECSTTSCT----------TSHEESSHHHHHHHHHHHHHHHT--SS
T ss_pred eEEEEcCCccCH--HHHH--HHHHhCCCCeEEEEEEecCCCCC----------CCCCCCCHHHHHHHHHHHhhhhC--CC
Confidence 466788875532 2333 33333333357788888877541 11122445554432 22222221 12
Q ss_pred CcEEEEEeChHHHHHHHHHHh
Q 044808 552 DNLCIEGGSAGGMLIGAVLNM 572 (623)
Q Consensus 552 ~ri~i~G~S~GG~l~~~~~~~ 572 (623)
+...++|+|+||.++..++.+
T Consensus 66 gp~~L~G~S~Gg~lA~E~A~~ 86 (229)
T PF00975_consen 66 GPYVLAGWSFGGILAFEMARQ 86 (229)
T ss_dssp SSEEEEEETHHHHHHHHHHHH
T ss_pred CCeeehccCccHHHHHHHHHH
Confidence 399999999999999877654
No 355
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=89.00 E-value=12 Score=37.25 Aligned_cols=129 Identities=13% Similarity=0.194 Sum_probs=72.9
Q ss_pred eEEeechhhcccCCCCcEEE----eeeEECCC---CCEEEEEEeCceEEEEECCCCCccccccC----ccceeEEecCC-
Q 044808 133 EVIIDEEVIKYKNSLENYRI----TAFKVSPN---NKLVAFRENCGTVCVIDSETGAPAEKPIQ----GCLEFEWAGDE- 200 (623)
Q Consensus 133 ~vllD~n~~a~~~~~~~~~l----~~~~~SPD---G~~lA~~~~~~~l~v~dl~tg~~~~~~i~----~~~~~~WspDg- 200 (623)
--+.|.|++.+.. .|.+ -..++||= +.+||.+.+..+|++.|+++|...- .+. ++-.+.|+|..
T Consensus 126 lKVWDtnTlQ~a~---~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH-~LsGHr~~vlaV~Wsp~~e 201 (397)
T KOG4283|consen 126 LKVWDTNTLQEAV---DFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH-TLSGHRDGVLAVEWSPSSE 201 (397)
T ss_pred EEEeecccceeeE---EeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee-eeccccCceEEEEeccCce
Confidence 4468999887642 2322 23456663 5678877666699999999997542 333 33359999998
Q ss_pred eEEEEEeCCCCCCeEEEEECCCCC-c---------ccEEEEeecCCc---eeEEEEEcCCCcEEEEEeecceeeEEEEEE
Q 044808 201 AFLYTRRNAIAEPQVWFHKLGEEQ-S---------KDTCLYRTREDL---FDLTLEASESKKFLFVKSKTKVTGFVYYFD 267 (623)
Q Consensus 201 ~l~y~~~d~~~~~~v~~~~lgt~~-~---------~d~lv~~~~~~~---~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~d 267 (623)
.++++..-+ . .+.++++.... . +...+.+ .++. -+-+++|+.||++++. ....+.+.+.+
T Consensus 202 ~vLatgsaD--g-~irlWDiRrasgcf~~lD~hn~k~~p~~~-~n~ah~gkvngla~tSd~~~l~~---~gtd~r~r~wn 274 (397)
T KOG4283|consen 202 WVLATGSAD--G-AIRLWDIRRASGCFRVLDQHNTKRPPILK-TNTAHYGKVNGLAWTSDARYLAS---CGTDDRIRVWN 274 (397)
T ss_pred eEEEecCCC--c-eEEEEEeecccceeEEeecccCccCcccc-ccccccceeeeeeecccchhhhh---ccCccceEEee
Confidence 677765322 1 23333332210 0 0001111 1111 1346789999999764 22345566666
Q ss_pred CCCCC
Q 044808 268 VSRPE 272 (623)
Q Consensus 268 l~~~~ 272 (623)
...|.
T Consensus 275 ~~~G~ 279 (397)
T KOG4283|consen 275 MESGR 279 (397)
T ss_pred cccCc
Confidence 66665
No 356
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=88.94 E-value=5.4 Score=45.14 Aligned_cols=109 Identities=15% Similarity=0.152 Sum_probs=69.0
Q ss_pred EeeeEECCCCCEEEEEEeCceEEEEECCC--CCccc-cccCc----cceeEEecCCeEEEEEeCCCCCC-eEEEEECCCC
Q 044808 152 ITAFKVSPNNKLVAFRENCGTVCVIDSET--GAPAE-KPIQG----CLEFEWAGDEAFLYTRRNAIAEP-QVWFHKLGEE 223 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~~l~v~dl~t--g~~~~-~~i~~----~~~~~WspDg~l~y~~~d~~~~~-~v~~~~lgt~ 223 (623)
+...++||+++++|-+-.+++|.||.--+ ++... ..+.+ +.+++||+||..+|+.. +. -+.+|.++|+
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG----~E~VLv~Wq~~T~ 283 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG----REGVLVLWQLETG 283 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecc----cceEEEEEeecCC
Confidence 56789999999999998888788775333 32221 12332 23599999996666542 33 6778889887
Q ss_pred CcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCC
Q 044808 224 QSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRP 271 (623)
Q Consensus 224 ~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~ 271 (623)
. .+.+ ..-. .-..++.+|||+....+... .+.|.++.+.+.
T Consensus 284 ~--kqfL-PRLg-s~I~~i~vS~ds~~~sl~~~---DNqI~li~~~dl 324 (792)
T KOG1963|consen 284 K--KQFL-PRLG-SPILHIVVSPDSDLYSLVLE---DNQIHLIKASDL 324 (792)
T ss_pred C--cccc-cccC-CeeEEEEEcCCCCeEEEEec---CceEEEEeccch
Confidence 4 3333 1111 12456788999987554332 466777766543
No 357
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=88.54 E-value=0.61 Score=45.19 Aligned_cols=53 Identities=25% Similarity=0.243 Sum_probs=29.2
Q ss_pred chHhHHHHHHHHHHH----cCCCCCCcEEEEEeChHHHHHHHHHHh----C----CCeeeEEEecCCcc
Q 044808 531 NTFTDFIACADYLIK----SNYCSEDNLCIEGGSAGGMLIGAVLNM----R----PELFKVAVADVPSV 587 (623)
Q Consensus 531 ~~~~D~~~~~~~l~~----~~~~d~~ri~i~G~S~GG~l~~~~~~~----~----p~~f~a~v~~~~~~ 587 (623)
....++.+++++|.+ +|-.| ||+|.|.||.+++.++.+ + .-.||.+|..+|+.
T Consensus 81 ~~~~~~~~sl~~l~~~i~~~GPfd----GvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~ 145 (212)
T PF03959_consen 81 HEYEGLDESLDYLRDYIEENGPFD----GVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFP 145 (212)
T ss_dssp GGG---HHHHHHHHHHHHHH---S----EEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES---
T ss_pred ccccCHHHHHHHHHHHHHhcCCeE----EEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccC
Confidence 345666666666553 45444 999999999998877743 1 12478888777665
No 358
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=88.48 E-value=31 Score=38.69 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=27.5
Q ss_pred cEEEeeeEECCCCCEEEEEEeCceEEEEECCCCC
Q 044808 149 NYRITAFKVSPNNKLVAFRENCGTVCVIDSETGA 182 (623)
Q Consensus 149 ~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~ 182 (623)
-+-+..+.+||||++||-+-..++|+|.||..-+
T Consensus 459 r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~ 492 (1080)
T KOG1408|consen 459 RFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE 492 (1080)
T ss_pred ccceEEEEECCCcceecccCccCceEEEEehhhh
Confidence 3456678999999999998766699999987644
No 359
>PF03283 PAE: Pectinacetylesterase
Probab=88.44 E-value=0.4 Score=50.35 Aligned_cols=37 Identities=22% Similarity=0.182 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHH
Q 044808 534 TDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVL 570 (623)
Q Consensus 534 ~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~ 570 (623)
.-+.+++++|..+|+-++++|.+.|.||||+-+..-.
T Consensus 138 ~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~ 174 (361)
T PF03283_consen 138 RILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHA 174 (361)
T ss_pred HHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHH
Confidence 3467899999999999999999999999999876544
No 360
>PRK13613 lipoprotein LpqB; Provisional
Probab=88.02 E-value=49 Score=37.37 Aligned_cols=162 Identities=13% Similarity=0.093 Sum_probs=85.0
Q ss_pred EEeeeEECCCCCEEEEEEeCc-eEEEEECCCCCc----cccccCcc--ceeEEecCCeEEEEEeCCCCCCeEEEEECCCC
Q 044808 151 RITAFKVSPNNKLVAFRENCG-TVCVIDSETGAP----AEKPIQGC--LEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEE 223 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~----~~~~i~~~--~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~ 223 (623)
.+..+.+|+||+.+|+....+ .|++-.+..+.. ....+... ..+.|.++|.++-. ......+++.+..-+++
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~~~~~Lt~PS~d~~g~vWtv-d~~~~~~~vl~v~~~~G 442 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVTADGRLTSPSWDGRGDLWVV-DRDPADPRLLWLLQGDG 442 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceeeccCcccCCcCcCCCCEEEe-cCCCCCceEEEEEcCCC
Confidence 466789999999999997655 888877655543 11122221 23888888744332 11112223333222333
Q ss_pred CcccEEEEe-ecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECC---CCC----ceeecCCCcccee-EEEEeeCCE
Q 044808 224 QSKDTCLYR-TREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVS---RPE----TLWFLPPWHLGID-MFVSHRGNQ 294 (623)
Q Consensus 224 ~~~d~lv~~-~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~---~~~----~~~~l~~~~~~~~-~~~~~dg~~ 294 (623)
.. ..|-. .-...-...+.+|+||-.+++.........|++.-+. ++. .++.+.+....+. ..|.. ++.
T Consensus 443 ~~--~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~-~~s 519 (599)
T PRK13613 443 EP--VEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAG-DSQ 519 (599)
T ss_pred cE--EEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcC-CCE
Confidence 21 11211 1111134567899999999887765444566654432 221 1222333222222 23544 456
Q ss_pred EEE-EeCCCCCCeEEEEEeCCCCC
Q 044808 295 FFI-RRSDGGFHSDVLTCPVDNTF 317 (623)
Q Consensus 295 ly~-sn~~g~~~~~L~~~d~~~~~ 317 (623)
|++ .... ..+..++.+.++...
T Consensus 520 L~Vlg~~~-~~~~~v~~v~vdG~~ 542 (599)
T PRK13613 520 LVVLGREE-GGVQQARYVQVDGST 542 (599)
T ss_pred EEEEeccC-CCCcceEEEecCCcC
Confidence 766 4333 234568888877553
No 361
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=87.89 E-value=1.4 Score=33.47 Aligned_cols=48 Identities=15% Similarity=0.201 Sum_probs=26.6
Q ss_pred CCceEeeeEEECCCCCeEEEEEEEeCC-CccCCCCccEEEEEcCCCCCC
Q 044808 437 SNYVTESKRAYASDGEEIPISIVYRKN-RVKLDGSDPLLLFGYGSYGLG 484 (623)
Q Consensus 437 ~~~~~~~~~~~s~dG~~i~~~l~~~~~-~~~~~~~~P~il~~~Gg~~~~ 484 (623)
..|.+|...+++.||.-+.++=+.++. .....++.|.|+..||=..++
T Consensus 8 ~GY~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss 56 (63)
T PF04083_consen 8 HGYPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSS 56 (63)
T ss_dssp TT---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--G
T ss_pred cCCCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccCh
Confidence 357889999999999988887666655 212445678888899965544
No 362
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=87.75 E-value=40 Score=35.53 Aligned_cols=251 Identities=11% Similarity=0.045 Sum_probs=117.8
Q ss_pred CCCCEEEEEEeCceEEEEECCCCCcccc-ccCc-cce-eEEecCCeEEEEEeCCCCCCeEEEEECCCCCcccEEEEeecC
Q 044808 159 PNNKLVAFRENCGTVCVIDSETGAPAEK-PIQG-CLE-FEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSKDTCLYRTRE 235 (623)
Q Consensus 159 PDG~~lA~~~~~~~l~v~dl~tg~~~~~-~i~~-~~~-~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~~~~~ 235 (623)
.++..+.++...+.|+.+|.++|+.+-. .+.. +.+ +.- .++.+++...+ ..|+..++.++.. +.-++...
T Consensus 103 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v-~~~~v~v~~~~----g~l~a~d~~tG~~--~W~~~~~~ 175 (377)
T TIGR03300 103 ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLV-ANGLVVVRTND----GRLTALDAATGER--LWTYSRVT 175 (377)
T ss_pred EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEE-ECCEEEEECCC----CeEEEEEcCCCce--eeEEccCC
Confidence 3566666555445899999999987532 1211 111 222 23355443321 1577777766531 11111111
Q ss_pred Ccee----EEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-ceeecCCCccc---------eeEEEEeeCCEEEEEeCC
Q 044808 236 DLFD----LTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-TLWFLPPWHLG---------IDMFVSHRGNQFFIRRSD 301 (623)
Q Consensus 236 ~~~~----~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l~~~~~~---------~~~~~~~dg~~ly~sn~~ 301 (623)
+.+. ..+.. .++ .+++... ...++.+|+.+++ .++.-.....+ ........++.+|+++.+
T Consensus 176 ~~~~~~~~~sp~~-~~~-~v~~~~~---~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~ 250 (377)
T TIGR03300 176 PALTLRGSASPVI-ADG-GVLVGFA---GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ 250 (377)
T ss_pred CceeecCCCCCEE-ECC-EEEEECC---CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC
Confidence 1111 11111 123 4444322 2468888888876 23211110000 001112246778883333
Q ss_pred CCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCCCcccccCCceeecCCCce
Q 044808 302 GGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSEL 381 (623)
Q Consensus 302 g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~ 381 (623)
..|+.+|.++++ ..|-.+... .....+.++++++... + ..|+.++..+ |+.+ +. .-.++..
T Consensus 251 ----g~l~a~d~~tG~-~~W~~~~~~---~~~p~~~~~~vyv~~~-~--G~l~~~d~~t-G~~~--W~---~~~~~~~-- 311 (377)
T TIGR03300 251 ----GRVAALDLRSGR-VLWKRDASS---YQGPAVDDNRLYVTDA-D--GVVVALDRRS-GSEL--WK---NDELKYR-- 311 (377)
T ss_pred ----CEEEEEECCCCc-EEEeeccCC---ccCceEeCCEEEEECC-C--CeEEEEECCC-CcEE--Ec---cccccCC--
Confidence 368999987764 456433211 2234456777777653 3 3588888865 5421 10 0011111
Q ss_pred EEEeeeccccCCcCCceEEEEeecCCCCCeEEEEECCCCcEEEEEEeeecC-CCCCCCc-eEeeeEEECCCCC
Q 044808 382 CISRIHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTGISVLKKKETILG-GFDESNY-VTESKRAYASDGE 452 (623)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~s~dG~ 452 (623)
.. .++...++.+++. ..-+.+|.+|..+|+..- +. ++.. .+..... .-+.+.+.+.||.
T Consensus 312 ~~------ssp~i~g~~l~~~----~~~G~l~~~d~~tG~~~~-~~-~~~~~~~~~sp~~~~~~l~v~~~dG~ 372 (377)
T TIGR03300 312 QL------TAPAVVGGYLVVG----DFEGYLHWLSREDGSFVA-RL-KTDGSGIASPPVVVGDGLLVQTRDGD 372 (377)
T ss_pred cc------ccCEEECCEEEEE----eCCCEEEEEECCCCCEEE-EE-EcCCCccccCCEEECCEEEEEeCCce
Confidence 11 1111234455443 233689999998887532 21 2111 2222222 3456777788884
No 363
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=87.62 E-value=16 Score=43.57 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=19.5
Q ss_pred EeeeEECCCCCEEEEEEeCceEEEE
Q 044808 152 ITAFKVSPNNKLVAFRENCGTVCVI 176 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~~l~v~ 176 (623)
|..++||||+..||++...++|.++
T Consensus 123 I~a~~WSPD~Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 123 ILAASWSPDEELLALVTGEGNLLLM 147 (928)
T ss_pred EEEEEECCCcCEEEEEeCCCEEEEE
Confidence 5678999999999999766544444
No 364
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.50 E-value=13 Score=36.04 Aligned_cols=113 Identities=14% Similarity=0.117 Sum_probs=59.3
Q ss_pred EeeeEECCCCCEEEEEEeCc---------eEEEEECCCCCccccccC---ccc-eeEEecCC-eEEEEEeCCCCCC-eEE
Q 044808 152 ITAFKVSPNNKLVAFRENCG---------TVCVIDSETGAPAEKPIQ---GCL-EFEWAGDE-AFLYTRRNAIAEP-QVW 216 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~---------~l~v~dl~tg~~~~~~i~---~~~-~~~WspDg-~l~y~~~d~~~~~-~v~ 216 (623)
+..-.++||||+.+=..... .||.+-+. +++- .+- +++ +++|+-|. +|||+-.. ... ..|
T Consensus 111 ~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~--~i~~~v~IsNgl~Wd~d~K~fY~iDsl--n~~V~a~ 185 (310)
T KOG4499|consen 111 LNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVE--LIWNCVGISNGLAWDSDAKKFYYIDSL--NYEVDAY 185 (310)
T ss_pred cccCccCCCCceeeeeeccccccccccccEEEEeccC-CCce--eeehhccCCccccccccCcEEEEEccC--ceEEeee
Confidence 44568999999943333221 67766443 3331 122 233 49999888 67776431 122 336
Q ss_pred EEECCCCCc-ccEEEEeecC-----CceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC
Q 044808 217 FHKLGEEQS-KDTCLYRTRE-----DLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE 272 (623)
Q Consensus 217 ~~~lgt~~~-~d~lv~~~~~-----~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~ 272 (623)
-++..+++. .+..||.-.. +.+--+..+..+| .|++...+ +..|+.+|+.+|+
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG-~L~Va~~n--g~~V~~~dp~tGK 244 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEG-NLYVATFN--GGTVQKVDPTTGK 244 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCC-cEEEEEec--CcEEEEECCCCCc
Confidence 666766642 3344554211 1111112223334 34444433 4689999999987
No 365
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=87.43 E-value=38 Score=34.92 Aligned_cols=55 Identities=24% Similarity=0.402 Sum_probs=35.6
Q ss_pred EEEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCc----cceeEEecCCeEEEE
Q 044808 150 YRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQG----CLEFEWAGDEAFLYT 205 (623)
Q Consensus 150 ~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~----~~~~~WspDg~l~y~ 205 (623)
.++...-+-|+--.++-+.+..+|+++|..+|+... .+.+ +..+.+..-|+.+.+
T Consensus 109 ~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~-~LrGHt~sv~di~~~a~Gk~l~t 167 (406)
T KOG0295|consen 109 SSVTRVIFHPSEALVVSASEDATIKVFDTETGELER-SLRGHTDSVFDISFDASGKYLAT 167 (406)
T ss_pred cceeeeeeccCceEEEEecCCceEEEEEccchhhhh-hhhccccceeEEEEecCccEEEe
Confidence 356666777877766666555699999999998743 2322 223677666644444
No 366
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.22 E-value=34 Score=34.23 Aligned_cols=200 Identities=13% Similarity=0.107 Sum_probs=99.9
Q ss_pred eeEECCCCCE-EEEEEeCc-eEEEEECCCCCcccc--ccCc--cce-eEEecCCeEEEEEeCCC--CCC--eEEEEECCC
Q 044808 154 AFKVSPNNKL-VAFRENCG-TVCVIDSETGAPAEK--PIQG--CLE-FEWAGDEAFLYTRRNAI--AEP--QVWFHKLGE 222 (623)
Q Consensus 154 ~~~~SPDG~~-lA~~~~~~-~l~v~dl~tg~~~~~--~i~~--~~~-~~WspDg~l~y~~~d~~--~~~--~v~~~~lgt 222 (623)
.+.++|--++ +||+...+ --+|+|..+++.... ..++ ..+ -+|||||.++|.+.++. .|- -||..+ .
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r--~ 149 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR--E 149 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc--c
Confidence 4677887654 78888777 788999998875432 1111 234 78999998888775432 222 344433 1
Q ss_pred CCcccEEEEeecCCcee---EEEEEcCCCcEEEEEee---cc-e-----------eeEEEEEECCCCC-ceeecCCCccc
Q 044808 223 EQSKDTCLYRTREDLFD---LTLEASESKKFLFVKSK---TK-V-----------TGFVYYFDVSRPE-TLWFLPPWHLG 283 (623)
Q Consensus 223 ~~~~d~lv~~~~~~~~~---~~~~~S~Dg~~l~i~s~---~~-~-----------~s~l~~~dl~~~~-~~~~l~~~~~~ 283 (623)
+- ..+-+ -+.+- ..+.|.+||+.|++.-. .+ . .-.+.++|..+++ --+...|....
T Consensus 150 ~f---qrvgE--~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~ 224 (366)
T COG3490 150 GF---QRVGE--FSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR 224 (366)
T ss_pred cc---ceecc--cccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh
Confidence 11 11211 11222 24678999999887532 11 0 1257777766765 11112221111
Q ss_pred ---ee-EEEEeeCCEEEE-EeCCCCCCe--EEEEEeCCCCCceee-EEcCCC----CceEeEEEEe-CCEEEEEEeeCCc
Q 044808 284 ---ID-MFVSHRGNQFFI-RRSDGGFHS--DVLTCPVDNTFETTV-LIPHRE----RVRVEEVRLF-ADHIAVYELEEGL 350 (623)
Q Consensus 284 ---~~-~~~~~dg~~ly~-sn~~g~~~~--~L~~~d~~~~~~~~~-li~~~~----d~~i~~~~~~-~~~Lv~~~~~~g~ 350 (623)
+. ..+.. ++++++ ....|..+- -|+-.-.. ++.-+. -++++. ...+.++... .+.++......|.
T Consensus 225 ~lSiRHld~g~-dgtvwfgcQy~G~~~d~ppLvg~~~~-g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN 302 (366)
T COG3490 225 QLSIRHLDIGR-DGTVWFGCQYRGPRNDLPPLVGHFRK-GEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGN 302 (366)
T ss_pred hcceeeeeeCC-CCcEEEEEEeeCCCccCCcceeeccC-CCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCC
Confidence 11 12333 356777 654322221 12222111 111111 111110 1124455554 3567777766664
Q ss_pred ceEEEEECCCCCCC
Q 044808 351 PKITTYCLPPVGEP 364 (623)
Q Consensus 351 ~~l~v~~l~~~g~~ 364 (623)
...+++.++ |..
T Consensus 303 -~~vi~da~t-G~v 314 (366)
T COG3490 303 -RAVIWDAAT-GAV 314 (366)
T ss_pred -eEEEEEcCC-CcE
Confidence 467788886 653
No 367
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=87.17 E-value=4.1 Score=43.93 Aligned_cols=145 Identities=16% Similarity=0.081 Sum_probs=82.1
Q ss_pred eEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCC---------ch-----hhhHHHHHCCcEEEEEe
Q 044808 444 KRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSN---------SI-----ASRLTILDRGIIFAIAH 509 (623)
Q Consensus 444 ~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~---------~~-----~~~~~~~~~G~~v~~~~ 509 (623)
+.+.-..|..+..|++--.. . ....|+||+.-||||=+...++. .. ...-+|-...=+...=.
T Consensus 49 v~v~~~~~~~LFYwf~eS~~--~-P~~dPlvLWLnGGPGCSSl~G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd~ 125 (454)
T KOG1282|consen 49 VTVNESEGRQLFYWFFESEN--N-PETDPLVLWLNGGPGCSSLGGLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLDQ 125 (454)
T ss_pred EECCCCCCceEEEEEEEccC--C-CCCCCEEEEeCCCCCccchhhhhhhcCCeEEcCCCCcceeCCccccccccEEEEec
Confidence 44444567888888555432 2 24579999999999955321211 00 01122333333333333
Q ss_pred ccCCCcCChhHHHcccccCCCchHhHHHHHH-HHHHHcCCCCCCcEEEEEeChHHH----HHHHHHHhC-----C-Ceee
Q 044808 510 VRGGDEKGKQWHENGKLLNKRNTFTDFIACA-DYLIKSNYCSEDNLCIEGGSAGGM----LIGAVLNMR-----P-ELFK 578 (623)
Q Consensus 510 ~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~~~d~~ri~i~G~S~GG~----l~~~~~~~~-----p-~~f~ 578 (623)
+-|. ||--.=-.......-..+..|...++ +|+.+.+.--.+...|.|-||+|. |+..++... | =-+|
T Consensus 126 PvGv-GFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~I~~~N~~~~~~~iNLk 204 (454)
T KOG1282|consen 126 PVGV-GFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQEILKGNKKCCKPNINLK 204 (454)
T ss_pred CCcC-CccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHHHHhccccccCCcccce
Confidence 4443 33211001111112234556766554 589998877778999999999995 444444432 2 1479
Q ss_pred EEEecCCccchhhh
Q 044808 579 VAVADVPSVDVLTT 592 (623)
Q Consensus 579 a~v~~~~~~d~~~~ 592 (623)
..+-+.|++|....
T Consensus 205 G~~IGNg~td~~~~ 218 (454)
T KOG1282|consen 205 GYAIGNGLTDPEID 218 (454)
T ss_pred EEEecCcccCcccc
Confidence 99999999997643
No 368
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=86.97 E-value=33 Score=35.54 Aligned_cols=139 Identities=10% Similarity=0.120 Sum_probs=69.9
Q ss_pred eeEECC--CCCEEEEEEeCceEEEEECCCCCccccccC---cc---ceeEEecCC-eEEEEEe-CCCCCCeEEEEECCCC
Q 044808 154 AFKVSP--NNKLVAFRENCGTVCVIDSETGAPAEKPIQ---GC---LEFEWAGDE-AFLYTRR-NAIAEPQVWFHKLGEE 223 (623)
Q Consensus 154 ~~~~SP--DG~~lA~~~~~~~l~v~dl~tg~~~~~~i~---~~---~~~~WspDg-~l~y~~~-d~~~~~~v~~~~lgt~ 223 (623)
++.||| .|+++ -+-....|+++...+|...-+..+ .. ..+.|||.. .+|.+.. |. .|..+++..+
T Consensus 216 ~LdWSp~~~g~Ll-sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dg----sIrIWDiRs~ 290 (440)
T KOG0302|consen 216 GLDWSPIKTGRLL-SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDG----SIRIWDIRSG 290 (440)
T ss_pred eeecccccccccc-cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCc----eEEEEEecCC
Confidence 468888 33221 111111899999999876544332 11 249999988 6766654 32 3556666666
Q ss_pred CcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC--ceeecCCCccceeE--EEEeeCCEEEE-E
Q 044808 224 QSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE--TLWFLPPWHLGIDM--FVSHRGNQFFI-R 298 (623)
Q Consensus 224 ~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~--~~~~l~~~~~~~~~--~~~~dg~~ly~-s 298 (623)
+.+..+.....+.... -++|+.+-.+|+ + ......+.+.|+..-+ .+...++......+ .|.|..+..+. +
T Consensus 291 ~~~~~~~~kAh~sDVN-VISWnr~~~lLa--s-G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaas 366 (440)
T KOG0302|consen 291 PKKAAVSTKAHNSDVN-VISWNRREPLLA--S-GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAAS 366 (440)
T ss_pred CccceeEeeccCCcee-eEEccCCcceee--e-cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEec
Confidence 5444444332222222 256776666333 2 2223345556665432 12222232222222 46666665555 5
Q ss_pred eCC
Q 044808 299 RSD 301 (623)
Q Consensus 299 n~~ 301 (623)
..+
T Consensus 367 g~D 369 (440)
T KOG0302|consen 367 GED 369 (440)
T ss_pred cCC
Confidence 544
No 369
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=86.67 E-value=21 Score=36.23 Aligned_cols=109 Identities=12% Similarity=0.128 Sum_probs=63.7
Q ss_pred eeeEECCCCCEEEEEEeCceEEEEEC-CCCCcccc--cc-------Cccce-eEEecCC-e-EEEEEeCCCCCCeEEEEE
Q 044808 153 TAFKVSPNNKLVAFRENCGTVCVIDS-ETGAPAEK--PI-------QGCLE-FEWAGDE-A-FLYTRRNAIAEPQVWFHK 219 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~~~l~v~dl-~tg~~~~~--~i-------~~~~~-~~WspDg-~-l~y~~~d~~~~~~v~~~~ 219 (623)
-.+.|||||.+|--+... .|+|+|+ ..|...+. ++ .++-+ ++++|-. + +....+.. +-.||..+
T Consensus 162 hsL~Fs~DGeqlfaGykr-cirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q--~~giy~~~ 238 (406)
T KOG2919|consen 162 HSLQFSPDGEQLFAGYKR-CIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQ--RVGIYNDD 238 (406)
T ss_pred eeEEecCCCCeEeecccc-eEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccc--eeeeEecC
Confidence 357999999998877665 7999999 56654332 11 23334 8888876 3 44444321 11466544
Q ss_pred CCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCC
Q 044808 220 LGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRP 271 (623)
Q Consensus 220 lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~ 271 (623)
-..+ -.++++.. .=...+.|.+||..|+..+ .-...|...|+...
T Consensus 239 ~~~p---l~llggh~--gGvThL~~~edGn~lfsGa--Rk~dkIl~WDiR~~ 283 (406)
T KOG2919|consen 239 GRRP---LQLLGGHG--GGVTHLQWCEDGNKLFSGA--RKDDKILCWDIRYS 283 (406)
T ss_pred CCCc---eeeecccC--CCeeeEEeccCcCeecccc--cCCCeEEEEeehhc
Confidence 3222 12333221 2234567899999987543 33456667777654
No 370
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=86.64 E-value=48 Score=35.28 Aligned_cols=247 Identities=12% Similarity=0.064 Sum_probs=116.7
Q ss_pred CCCEEEEEEeCceEEEEECCCCCcccc-ccCc-cc-eeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcccEEEEeec--
Q 044808 160 NNKLVAFRENCGTVCVIDSETGAPAEK-PIQG-CL-EFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSKDTCLYRTR-- 234 (623)
Q Consensus 160 DG~~lA~~~~~~~l~v~dl~tg~~~~~-~i~~-~~-~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~~~~-- 234 (623)
++..|.++...+.|+-+|.++|+.+-. .+.. .. .+.-. ++.+++...+ ..|+..+..++. +++...
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~~~v~v~~~~----g~l~ald~~tG~----~~W~~~~~ 189 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVS-DGLVLVHTSN----GMLQALNESDGA----VKWTVNLD 189 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEE-CCEEEEECCC----CEEEEEEccCCC----EeeeecCC
Confidence 344555554444899999999987532 2221 11 12221 4455554322 157777776663 222211
Q ss_pred CCcee----EEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-ceeecCCCccc---------eeEEEEeeCCEEEE-Ee
Q 044808 235 EDLFD----LTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-TLWFLPPWHLG---------IDMFVSHRGNQFFI-RR 299 (623)
Q Consensus 235 ~~~~~----~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l~~~~~~---------~~~~~~~dg~~ly~-sn 299 (623)
.+.+. ..+... ++ .+++... ...++.+++++++ .|+.-.....+ +.......++.+|+ +.
T Consensus 190 ~~~~~~~~~~sP~v~-~~-~v~~~~~---~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~ 264 (394)
T PRK11138 190 VPSLTLRGESAPATA-FG-GAIVGGD---NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY 264 (394)
T ss_pred CCcccccCCCCCEEE-CC-EEEEEcC---CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc
Confidence 11110 111111 22 3444322 3467888888876 33221111000 01111124678888 54
Q ss_pred CCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCCCcccccCCceeecCCC
Q 044808 300 SDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKS 379 (623)
Q Consensus 300 ~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~ 379 (623)
+ ..|+.+|+.+++ ..|-.+... ...+...++.||+.... .+++.++..+ |+.+ +... .+...
T Consensus 265 -~----g~l~ald~~tG~-~~W~~~~~~---~~~~~~~~~~vy~~~~~---g~l~ald~~t-G~~~--W~~~---~~~~~ 326 (394)
T PRK11138 265 -N----GNLVALDLRSGQ-IVWKREYGS---VNDFAVDGGRIYLVDQN---DRVYALDTRG-GVEL--WSQS---DLLHR 326 (394)
T ss_pred -C----CeEEEEECCCCC-EEEeecCCC---ccCcEEECCEEEEEcCC---CeEEEEECCC-CcEE--Eccc---ccCCC
Confidence 3 369999988775 356322111 12344567788876643 2588888765 5421 1100 00010
Q ss_pred ceEEEeeeccccCCcCCceEEEEeecCCCCCeEEEEECCCCcEEEEEEeeec-CCCCCCCc-eEeeeEEECCCCC
Q 044808 380 ELCISRIHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTGISVLKKKETIL-GGFDESNY-VTESKRAYASDGE 452 (623)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~s~dG~ 452 (623)
.. .++...++.+++. ..-+.++.+|..+|+..- ..++. ..+..... .-.++.+.+.||.
T Consensus 327 --~~------~sp~v~~g~l~v~----~~~G~l~~ld~~tG~~~~--~~~~~~~~~~s~P~~~~~~l~v~t~~G~ 387 (394)
T PRK11138 327 --LL------TAPVLYNGYLVVG----DSEGYLHWINREDGRFVA--QQKVDSSGFLSEPVVADDKLLIQARDGT 387 (394)
T ss_pred --cc------cCCEEECCEEEEE----eCCCEEEEEECCCCCEEE--EEEcCCCcceeCCEEECCEEEEEeCCce
Confidence 11 0111124455443 233689999999987532 22221 11222222 2346777777884
No 371
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=86.07 E-value=39 Score=33.70 Aligned_cols=185 Identities=11% Similarity=0.094 Sum_probs=94.3
Q ss_pred eeEECCCCCEEEEEEeCc--eEEEEECCCCCcccc-ccCcc-c--eeEEecCCeEEEEEeCCCCCC-eEEEEECCCCCcc
Q 044808 154 AFKVSPNNKLVAFRENCG--TVCVIDSETGAPAEK-PIQGC-L--EFEWAGDEAFLYTRRNAIAEP-QVWFHKLGEEQSK 226 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~--~l~v~dl~tg~~~~~-~i~~~-~--~~~WspDg~l~y~~~d~~~~~-~v~~~~lgt~~~~ 226 (623)
++.+..||.++--+--.+ .|+.+|++||+.+.. .++.. . |++-..| +++..+ ++. ..+.++..+-+.
T Consensus 49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLT----Wk~~~~f~yd~~tl~~- 122 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLT----WKEGTGFVYDPNTLKK- 122 (264)
T ss_dssp EEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEE----SSSSEEEEEETTTTEE-
T ss_pred cEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEE----ecCCeEEEEccccceE-
Confidence 455656665432221112 899999999998753 44432 2 4554433 666554 334 678888876432
Q ss_pred cEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceee--cCCCccceeE--EEEeeCCEEEE-EeCC
Q 044808 227 DTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWF--LPPWHLGIDM--FVSHRGNQFFI-RRSD 301 (623)
Q Consensus 227 d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~--l~~~~~~~~~--~~~~dg~~ly~-sn~~ 301 (623)
.--|.-+.++| .++.||+.|++ +.+++.|+.+|.++-+..+. +......+.. .++--++.+|. --..
T Consensus 123 -~~~~~y~~EGW----GLt~dg~~Li~---SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i~G~IyANVW~t 194 (264)
T PF05096_consen 123 -IGTFPYPGEGW----GLTSDGKRLIM---SDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYINGKIYANVWQT 194 (264)
T ss_dssp -EEEEE-SSS------EEEECSSCEEE---E-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEETTEEEEEETTS
T ss_pred -EEEEecCCcce----EEEcCCCEEEE---ECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEEcCEEEEEeCCC
Confidence 21222222334 34578888765 33468999999876541111 2211111111 23334677776 4443
Q ss_pred CCCCeEEEEEeCCCCCceee-----EEcC-----C---CCceEeEEEEe--CCEEEEEEeeCCcceEEEEEC
Q 044808 302 GGFHSDVLTCPVDNTFETTV-----LIPH-----R---ERVRVEEVRLF--ADHIAVYELEEGLPKITTYCL 358 (623)
Q Consensus 302 g~~~~~L~~~d~~~~~~~~~-----li~~-----~---~d~~i~~~~~~--~~~Lv~~~~~~g~~~l~v~~l 358 (623)
..|+++|.+++....| +.+. . .+-.+.+++.. .+.++++.. -.+.++.+.+
T Consensus 195 ----d~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK--~Wp~lyeV~l 260 (264)
T PF05096_consen 195 ----DRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK--LWPKLYEVKL 260 (264)
T ss_dssp ----SEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET--T-SEEEEEEE
T ss_pred ----CeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC--CCCceEEEEE
Confidence 4799999998865444 2221 1 12247788875 366666653 3445554443
No 372
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=85.67 E-value=8.2 Score=42.09 Aligned_cols=82 Identities=12% Similarity=0.122 Sum_probs=54.2
Q ss_pred eeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCcc-ceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcccEEEE
Q 044808 153 TAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQGC-LEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSKDTCLY 231 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~~-~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~ 231 (623)
...++||+.++++.+..++.|.++|..++...-....=. .-++|.|||.++.+..+. .++...+++-....-.++-
T Consensus 263 ~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~q---GelQ~FD~ALspi~~qLls 339 (545)
T PF11768_consen 263 ICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQ---GELQCFDMALSPIKMQLLS 339 (545)
T ss_pred eEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEcCC---ceEEEEEeecCccceeecc
Confidence 457899999999999888899999998774432111111 139999999777776432 2566777766554444444
Q ss_pred eecCCc
Q 044808 232 RTREDL 237 (623)
Q Consensus 232 ~~~~~~ 237 (623)
++..|.
T Consensus 340 Ed~~P~ 345 (545)
T PF11768_consen 340 EDATPK 345 (545)
T ss_pred ccCCCc
Confidence 544443
No 373
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=85.66 E-value=53 Score=34.88 Aligned_cols=244 Identities=14% Similarity=0.064 Sum_probs=126.1
Q ss_pred eeEECCCCCEEEEEEeCc-eEEEEECCCCCcccc-ccCcc--ceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCcccE
Q 044808 154 AFKVSPNNKLVAFRENCG-TVCVIDSETGAPAEK-PIQGC--LEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQSKDT 228 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~~-~i~~~--~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~~d~ 228 (623)
...+.|+|..+..+.... .+.+.+......... ..... .+++-++++ ++|....+. ..|...+..+..
T Consensus 35 ~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~---~~v~vid~~~~~---- 107 (381)
T COG3391 35 GVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDS---NTVSVIDTATNT---- 107 (381)
T ss_pred eeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCC---CeEEEEcCcccc----
Confidence 457888888777765544 566666653322211 11111 136667777 444443221 145555543321
Q ss_pred EEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCC-ccceeEEEEeeCCEEEEEeCCCCCCeE
Q 044808 229 CLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPW-HLGIDMFVSHRGNQFFIRRSDGGFHSD 307 (623)
Q Consensus 229 lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~-~~~~~~~~~~dg~~ly~sn~~g~~~~~ 307 (623)
.+....-...-..+.++++++++++......++.++++|..+.. .....+. .......++++|..+|+++.. ...
T Consensus 108 ~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~-~~~~~~vG~~P~~~a~~p~g~~vyv~~~~---~~~ 183 (381)
T COG3391 108 VLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK-VTATIPVGNTPTGVAVDPDGNKVYVTNSD---DNT 183 (381)
T ss_pred eeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCe-EEEEEecCCCcceEEECCCCCeEEEEecC---CCe
Confidence 11111111123457889999998875433356889999988776 2211221 111234688999999996533 346
Q ss_pred EEEEeCCCCCceee----EEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCCCcccccCCceeecCCCceEE
Q 044808 308 VLTCPVDNTFETTV----LIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCI 383 (623)
Q Consensus 308 L~~~d~~~~~~~~~----li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~~ 383 (623)
|..++.+.....++ .+.....-....+...+.++++....+....+.+++..+ +... ....+.... .
T Consensus 184 v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~-~~v~-------~~~~~~~~~-~ 254 (381)
T COG3391 184 VSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT-GNVT-------ATDLPVGSG-A 254 (381)
T ss_pred EEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC-ceEE-------EeccccccC-C
Confidence 77777554321100 111111111123445667788777666444677777764 3211 111111110 0
Q ss_pred EeeeccccCCcCCceEEEEeecCCCCCeEEEEECCCCcEE
Q 044808 384 SRIHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTGISV 423 (623)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~ 423 (623)
......++++..+++..+. ...++.+|..+....
T Consensus 255 ---~~~v~~~p~g~~~yv~~~~---~~~V~vid~~~~~v~ 288 (381)
T COG3391 255 ---PRGVAVDPAGKAAYVANSQ---GGTVSVIDGATDRVV 288 (381)
T ss_pred ---CCceeECCCCCEEEEEecC---CCeEEEEeCCCCcee
Confidence 0112345667666554333 788999997776543
No 374
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=85.24 E-value=25 Score=36.38 Aligned_cols=112 Identities=17% Similarity=0.189 Sum_probs=65.3
Q ss_pred EEEeeeEECCCCCEEEEEEeCceEEEEECCCC------Ccccc----ccCccceeEEecCCeEEEEEeCCCCCC-eEEEE
Q 044808 150 YRITAFKVSPNNKLVAFRENCGTVCVIDSETG------APAEK----PIQGCLEFEWAGDEAFLYTRRNAIAEP-QVWFH 218 (623)
Q Consensus 150 ~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg------~~~~~----~i~~~~~~~WspDg~l~y~~~d~~~~~-~v~~~ 218 (623)
-.|..+.+|.+|++||-+-|.....||.++.- +++.. .-.++..++|.-.++++|.- ++. +|..|
T Consensus 57 GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG----~~~~~VI~H 132 (609)
T KOG4227|consen 57 GCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSG----ERWGTVIKH 132 (609)
T ss_pred cccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecC----CCcceeEee
Confidence 36788999999999999877767777776531 22210 01234457775545787764 234 79999
Q ss_pred ECCCCCcccEEEEeecCCc-eeEEEEEcCCCcEEEEEeecceeeEEEEEECCC
Q 044808 219 KLGEEQSKDTCLYRTREDL-FDLTLEASESKKFLFVKSKTKVTGFVYYFDVSR 270 (623)
Q Consensus 219 ~lgt~~~~d~lv~~~~~~~-~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~ 270 (623)
++.+.+. .-|+.+.+.. -..++..+|-...++..+. ...|.++|...
T Consensus 133 DiEt~qs--i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~---~~~V~~~D~Rd 180 (609)
T KOG4227|consen 133 DIETKQS--IYVANENNNRGDVYHMDQHPTDNTLIVVTR---AKLVSFIDNRD 180 (609)
T ss_pred eccccee--eeeecccCcccceeecccCCCCceEEEEec---CceEEEEeccC
Confidence 9998753 4566554421 1223445665444333222 23455556544
No 375
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=85.08 E-value=6.3 Score=39.68 Aligned_cols=128 Identities=15% Similarity=0.176 Sum_probs=77.4
Q ss_pred ceEEeechhhcccCCCCcEEEeeeEECCCCCEEEEEEeCceEEEEECCCCC------ccccccCcc-ceeEEecCC-eEE
Q 044808 132 EEVIIDEEVIKYKNSLENYRITAFKVSPNNKLVAFRENCGTVCVIDSETGA------PAEKPIQGC-LEFEWAGDE-AFL 203 (623)
Q Consensus 132 ~~vllD~n~~a~~~~~~~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~------~~~~~i~~~-~~~~WspDg-~l~ 203 (623)
.-|||..|.-+ ..+.|||.++++|.+.....|-|.-.+.-. .+..+|..+ .++.|-|++ -+.
T Consensus 93 tlvLlRiNrAA----------t~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla 162 (361)
T KOG1523|consen 93 TLVLLRINRAA----------TCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA 162 (361)
T ss_pred ceeEEEeccce----------eeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence 45777777322 357999999999998765555555444322 122233332 359999998 566
Q ss_pred EEEeCCCCCC-eEEEEECCCCCccc---------EEEEee-cCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC
Q 044808 204 YTRRNAIAEP-QVWFHKLGEEQSKD---------TCLYRT-REDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE 272 (623)
Q Consensus 204 y~~~d~~~~~-~v~~~~lgt~~~~d---------~lv~~~-~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~ 272 (623)
....|..-|- ..|...+.+.++.. .++.|- ..+.+..++.|||+|..|.+... .+.+.+.|...+.
T Consensus 163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H---ds~v~~~da~~p~ 239 (361)
T KOG1523|consen 163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH---DSTVSFVDAAGPS 239 (361)
T ss_pred ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC---CCceEEeecCCCc
Confidence 6555554444 56777776543211 122221 23456667889999999988653 2466777776653
No 376
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=84.84 E-value=52 Score=34.12 Aligned_cols=188 Identities=13% Similarity=0.067 Sum_probs=101.6
Q ss_pred EEEeeeEECCCCCEEEEEEeCceEEEEECCCCCcc-----------------------cc-ccCc----cceeEEecCCe
Q 044808 150 YRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPA-----------------------EK-PIQG----CLEFEWAGDEA 201 (623)
Q Consensus 150 ~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~-----------------------~~-~i~~----~~~~~WspDg~ 201 (623)
-.+..+++.+||.+++-++-..+|.||+.++-+.. +. .+.+ +..+.|++ ..
T Consensus 194 ~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~ 272 (423)
T KOG0313|consen 194 RSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-AT 272 (423)
T ss_pred cceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CC
Confidence 46778899999999888765558999984432110 00 1111 23489987 44
Q ss_pred EEEEE-eCCCCCCeEEEEECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-ce--eec
Q 044808 202 FLYTR-RNAIAEPQVWFHKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-TL--WFL 277 (623)
Q Consensus 202 l~y~~-~d~~~~~~v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~~--~~l 277 (623)
.+|+. .|. .|..+++.++...+.+. . + .-+..++.+|..+.|+-.+ ....+.+.|..++. .. ..+
T Consensus 273 v~yS~SwDH----TIk~WDletg~~~~~~~-~-~--ksl~~i~~~~~~~Ll~~gs---sdr~irl~DPR~~~gs~v~~s~ 341 (423)
T KOG0313|consen 273 VIYSVSWDH----TIKVWDLETGGLKSTLT-T-N--KSLNCISYSPLSKLLASGS---SDRHIRLWDPRTGDGSVVSQSL 341 (423)
T ss_pred ceEeecccc----eEEEEEeecccceeeee-c-C--cceeEeecccccceeeecC---CCCceeecCCCCCCCceeEEee
Confidence 44544 333 58888888876543322 2 1 1234567788776654322 23567778887765 22 223
Q ss_pred CCCcccee-EEEEeeCCEEEE-EeCCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEE
Q 044808 278 PPWHLGID-MFVSHRGNQFFI-RRSDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITT 355 (623)
Q Consensus 278 ~~~~~~~~-~~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v 355 (623)
..+..-+. ..|+|.....++ ...+ ..+...|+......-..|..+.|. +-.+.|.+..++++.-.+. +|++
T Consensus 342 ~gH~nwVssvkwsp~~~~~~~S~S~D----~t~klWDvRS~k~plydI~~h~DK-vl~vdW~~~~~IvSGGaD~--~l~i 414 (423)
T KOG0313|consen 342 IGHKNWVSSVKWSPTNEFQLVSGSYD----NTVKLWDVRSTKAPLYDIAGHNDK-VLSVDWNEGGLIVSGGADN--KLRI 414 (423)
T ss_pred ecchhhhhheecCCCCceEEEEEecC----CeEEEEEeccCCCcceeeccCCce-EEEEeccCCceEEeccCcc--eEEE
Confidence 33332222 235666665566 4444 134444554432111144444453 5578887776776665443 3444
Q ss_pred E
Q 044808 356 Y 356 (623)
Q Consensus 356 ~ 356 (623)
+
T Consensus 415 ~ 415 (423)
T KOG0313|consen 415 F 415 (423)
T ss_pred e
Confidence 3
No 377
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=84.65 E-value=62 Score=34.82 Aligned_cols=157 Identities=13% Similarity=0.087 Sum_probs=91.2
Q ss_pred EEEeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc-ccCcc---ceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCc
Q 044808 150 YRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK-PIQGC---LEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 150 ~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~-~i~~~---~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~ 225 (623)
-.+..+...-...+||-+.+.+.|.|..++|+..... .++.- .-+.+++-.+++.....+++ .|.++++... .
T Consensus 122 stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G--~VtlwDv~g~-s 198 (673)
T KOG4378|consen 122 STVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKG--AVTLWDVQGM-S 198 (673)
T ss_pred ceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCC--eEEEEeccCC-C
Confidence 4567778888889999998888999999999865431 23321 12677887754444332211 4666666432 1
Q ss_pred ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeEEEEeeCCEEEEEeCCCCCC
Q 044808 226 KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDMFVSHRGNQFFIRRSDGGFH 305 (623)
Q Consensus 226 ~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~~~~~dg~~ly~sn~~g~~~ 305 (623)
...-+.+.+..=..++.+||....|++... ....|++.|........+++-...-....|.++|-.|.+-+. +
T Consensus 199 -p~~~~~~~HsAP~~gicfspsne~l~vsVG--~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s----~ 271 (673)
T KOG4378|consen 199 -PIFHASEAHSAPCRGICFSPSNEALLVSVG--YDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNS----K 271 (673)
T ss_pred -cccchhhhccCCcCcceecCCccceEEEec--ccceEEEeecccccccceeeecCCcceeeecCCceEEEeecC----C
Confidence 222222222112346788999998887553 346788888765431222221111112346677665555222 3
Q ss_pred eEEEEEeCCCC
Q 044808 306 SDVLTCPVDNT 316 (623)
Q Consensus 306 ~~L~~~d~~~~ 316 (623)
++|+.+|+...
T Consensus 272 G~~i~YD~R~~ 282 (673)
T KOG4378|consen 272 GELIAYDMRST 282 (673)
T ss_pred ceEEEEecccC
Confidence 57999998654
No 378
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=84.58 E-value=0.91 Score=42.63 Aligned_cols=95 Identities=15% Similarity=0.100 Sum_probs=57.9
Q ss_pred EEEEEcCCCCCCCCCCCCchhhhHHHHHC-CcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCC
Q 044808 473 LLLFGYGSYGLGPSSYSNSIASRLTILDR-GIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSE 551 (623)
Q Consensus 473 ~il~~~Gg~~~~~~~~~~~~~~~~~~~~~-G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~ 551 (623)
.||.+-|.-|+... .|. +....+-.. -+.++..|.+|- |..-- .-++..-+--..|..+|++-+.+. +-
T Consensus 44 ~iLlipGalGs~~t-Df~--pql~~l~k~l~~TivawDPpGY---G~SrP-P~Rkf~~~ff~~Da~~avdLM~aL---k~ 113 (277)
T KOG2984|consen 44 YILLIPGALGSYKT-DFP--PQLLSLFKPLQVTIVAWDPPGY---GTSRP-PERKFEVQFFMKDAEYAVDLMEAL---KL 113 (277)
T ss_pred eeEecccccccccc-cCC--HHHHhcCCCCceEEEEECCCCC---CCCCC-CcccchHHHHHHhHHHHHHHHHHh---CC
Confidence 34445665554433 566 555444332 389999999984 32100 000000111235666666666553 45
Q ss_pred CcEEEEEeChHHHHHHHHHHhCCCee
Q 044808 552 DNLCIEGGSAGGMLIGAVLNMRPELF 577 (623)
Q Consensus 552 ~ri~i~G~S~GG~l~~~~~~~~p~~f 577 (623)
++..|+|||-||..++.+++++++..
T Consensus 114 ~~fsvlGWSdGgiTalivAak~~e~v 139 (277)
T KOG2984|consen 114 EPFSVLGWSDGGITALIVAAKGKEKV 139 (277)
T ss_pred CCeeEeeecCCCeEEEEeeccChhhh
Confidence 89999999999999999999988754
No 379
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=84.02 E-value=6.6 Score=39.49 Aligned_cols=67 Identities=15% Similarity=0.289 Sum_probs=49.1
Q ss_pred EEeeeEECCCCCEEEEEEeCc-eEEEEECCCCCccccccCcc-----ceeEEecCCeEEEEEeCCCCCC-eEEEEE
Q 044808 151 RITAFKVSPNNKLVAFRENCG-TVCVIDSETGAPAEKPIQGC-----LEFEWAGDEAFLYTRRNAIAEP-QVWFHK 219 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~~~i~~~-----~~~~WspDg~l~y~~~d~~~~~-~v~~~~ 219 (623)
.|+.++++-+|.+||-++..+ -|+|+|..+|+.+.+--.++ ..+++|||++++-...|. .. +|+..+
T Consensus 183 ~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK--gTlHiF~l~ 256 (346)
T KOG2111|consen 183 DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK--GTLHIFSLR 256 (346)
T ss_pred ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCC--CeEEEEEee
Confidence 567899999999999999888 79999999999887532232 359999999544444332 33 555544
No 380
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.85 E-value=4.5 Score=41.78 Aligned_cols=69 Identities=17% Similarity=0.163 Sum_probs=52.3
Q ss_pred chHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh---C-----CCeeeEEEecCCccchh------hhhhCC
Q 044808 531 NTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNM---R-----PELFKVAVADVPSVDVL------TTILFY 596 (623)
Q Consensus 531 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~---~-----p~~f~a~v~~~~~~d~~------~~~~~~ 596 (623)
.+-.++...+++|.+.+-+ .+|-|+.||+|.++++-++-| . +..|+-+|..+|=.|.= ..|.++
T Consensus 172 ~Sr~aLe~~lr~La~~~~~--~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD~DVF~~Q~~~mg~~ 249 (377)
T COG4782 172 YSRPALERLLRYLATDKPV--KRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDIDVDVFSSQIAAMGKP 249 (377)
T ss_pred hhHHHHHHHHHHHHhCCCC--ceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCChhhHHHHHHHhcCC
Confidence 4668889999999987653 699999999999999887755 1 33588888888876642 346666
Q ss_pred CCccc
Q 044808 597 PRKRD 601 (623)
Q Consensus 597 ~~~~~ 601 (623)
...+.
T Consensus 250 ~~~ft 254 (377)
T COG4782 250 DPPFT 254 (377)
T ss_pred CCCee
Confidence 66554
No 381
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=83.85 E-value=2.9 Score=28.99 Aligned_cols=30 Identities=30% Similarity=0.572 Sum_probs=24.9
Q ss_pred EeeeEECCCCC---EEEEEEeCceEEEEECCCC
Q 044808 152 ITAFKVSPNNK---LVAFRENCGTVCVIDSETG 181 (623)
Q Consensus 152 l~~~~~SPDG~---~lA~~~~~~~l~v~dl~tg 181 (623)
+..+++||+.. +|||+.+.+.++|.|+.++
T Consensus 3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred eEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 45679998555 9999999999999999864
No 382
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=83.64 E-value=19 Score=37.40 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=42.9
Q ss_pred EeeeEECCCCCEEEEEEeCceEEEEECCCCCcccccc--Cccce--eEEecCCeEEEEE
Q 044808 152 ITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPI--QGCLE--FEWAGDEAFLYTR 206 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i--~~~~~--~~WspDg~l~y~~ 206 (623)
+-++.|+-||.+|+-+.....|+|+|..+|+++.+.. .++.. ..|..+|.++-+.
T Consensus 176 i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 176 VYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred EEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 5568999999999988776699999999999987542 23443 8899998855443
No 383
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=83.36 E-value=42 Score=33.61 Aligned_cols=156 Identities=14% Similarity=0.156 Sum_probs=83.2
Q ss_pred EEeeeEECCC-CCEEEEEEeCceEEEEECCCCCc--ccc-ccC---ccceeEEecCC-eEEEEEeCCCCCCeEEEEECCC
Q 044808 151 RITAFKVSPN-NKLVAFRENCGTVCVIDSETGAP--AEK-PIQ---GCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGE 222 (623)
Q Consensus 151 ~l~~~~~SPD-G~~lA~~~~~~~l~v~dl~tg~~--~~~-~i~---~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt 222 (623)
.+.+|.|.-= -++|.-++=..+.-|||+++|.. +.. -|- .+..++|+.+| .+|-+.. ..+ .|...+|..
T Consensus 152 PlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvg-aDG--SvRmFDLR~ 228 (364)
T KOG0290|consen 152 PLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVG-ADG--SVRMFDLRS 228 (364)
T ss_pred cccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEec-CCC--cEEEEEecc
Confidence 4555555443 33343332122888999999843 221 222 23459999988 4444332 211 366667765
Q ss_pred CCcccEEEEeecCCc-eeEEEEEcCCC-cEEEEEeecceeeEEEEEECCCCC-ceeecCCCcccee-EEEEeeCCEEEEE
Q 044808 223 EQSKDTCLYRTREDL-FDLTLEASESK-KFLFVKSKTKVTGFVYYFDVSRPE-TLWFLPPWHLGID-MFVSHRGNQFFIR 298 (623)
Q Consensus 223 ~~~~d~lv~~~~~~~-~~~~~~~S~Dg-~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l~~~~~~~~-~~~~~dg~~ly~s 298 (623)
-. ..+++|+.+.+. =.+.++|.+.. +|++ .-..++++|.++|+.-+. ....|..+...+. ..|.|.....+.|
T Consensus 229 le-HSTIIYE~p~~~~pLlRLswnkqDpnymA--Tf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 229 LE-HSTIIYEDPSPSTPLLRLSWNKQDPNYMA--TFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred cc-cceEEecCCCCCCcceeeccCcCCchHHh--hhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeee
Confidence 43 357889876532 23456666644 3332 223456799999998776 3333433333332 2466655544443
Q ss_pred eCCCCCCeEEEEEeCCC
Q 044808 299 RSDGGFHSDVLTCPVDN 315 (623)
Q Consensus 299 n~~g~~~~~L~~~d~~~ 315 (623)
-.+ ..+....|+..
T Consensus 306 aGD---D~qaliWDl~q 319 (364)
T KOG0290|consen 306 AGD---DCQALIWDLQQ 319 (364)
T ss_pred cCC---cceEEEEeccc
Confidence 322 24566666654
No 384
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=83.05 E-value=2.4 Score=28.05 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=23.5
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEE
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVID 177 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~d 177 (623)
.+..+.++|++++||-+...+.|+++|
T Consensus 13 ~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 13 SINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred cEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999998877899886
No 385
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=83.03 E-value=20 Score=29.37 Aligned_cols=69 Identities=13% Similarity=0.181 Sum_probs=38.6
Q ss_pred eEEecC-CeEEEEEeCCC------------CCC--eEEEEECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecc
Q 044808 194 FEWAGD-EAFLYTRRNAI------------AEP--QVWFHKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTK 258 (623)
Q Consensus 194 ~~WspD-g~l~y~~~d~~------------~~~--~v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~ 258 (623)
+.-.++ |.+||+-.-.. +++ +|+.++..|++ -.++.++- .|--++++|+|+++|++....
T Consensus 3 ldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~--~~vl~~~L--~fpNGVals~d~~~vlv~Et~- 77 (89)
T PF03088_consen 3 LDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKE--TTVLLDGL--YFPNGVALSPDESFVLVAETG- 77 (89)
T ss_dssp EEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTE--EEEEEEEE--SSEEEEEE-TTSSEEEEEEGG-
T ss_pred eeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCe--EEEehhCC--CccCeEEEcCCCCEEEEEecc-
Confidence 455667 47777754211 234 89999999874 24444432 244578999999999885432
Q ss_pred eeeEEEEEEC
Q 044808 259 VTGFVYYFDV 268 (623)
Q Consensus 259 ~~s~l~~~dl 268 (623)
..+|...-+
T Consensus 78 -~~Ri~rywl 86 (89)
T PF03088_consen 78 -RYRILRYWL 86 (89)
T ss_dssp -GTEEEEEES
T ss_pred -CceEEEEEE
Confidence 345544433
No 386
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=82.33 E-value=2.8 Score=41.69 Aligned_cols=101 Identities=18% Similarity=0.018 Sum_probs=58.0
Q ss_pred cEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHH--cCCC
Q 044808 472 PLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIK--SNYC 549 (623)
Q Consensus 472 P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~--~~~~ 549 (623)
|.|+.+|++-|.. ..|. +-... +..=.-|.....+|-+.. .....+++|.+++.--.+. |+
T Consensus 1 ~pLF~fhp~~G~~--~~~~--~L~~~-l~~~~~v~~l~a~g~~~~----------~~~~~~l~~~a~~yv~~Ir~~QP-- 63 (257)
T COG3319 1 PPLFCFHPAGGSV--LAYA--PLAAA-LGPLLPVYGLQAPGYGAG----------EQPFASLDDMAAAYVAAIRRVQP-- 63 (257)
T ss_pred CCEEEEcCCCCcH--HHHH--HHHHH-hccCceeeccccCccccc----------ccccCCHHHHHHHHHHHHHHhCC--
Confidence 5677889875543 2233 22222 333367777788875532 2234566666654433332 23
Q ss_pred CCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchhh
Q 044808 550 SEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVLT 591 (623)
Q Consensus 550 d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~ 591 (623)
.+-..+.|||+||.++..++.+- +.=.-.|+..+++|...
T Consensus 64 -~GPy~L~G~S~GG~vA~evA~qL-~~~G~~Va~L~llD~~~ 103 (257)
T COG3319 64 -EGPYVLLGWSLGGAVAFEVAAQL-EAQGEEVAFLGLLDAVP 103 (257)
T ss_pred -CCCEEEEeeccccHHHHHHHHHH-HhCCCeEEEEEEeccCC
Confidence 24688999999999998777652 11123466666666543
No 387
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=82.02 E-value=5.9 Score=42.73 Aligned_cols=123 Identities=14% Similarity=0.110 Sum_probs=67.5
Q ss_pred CCCccEEEEEcCCCCCCCCC-------------CCCchh--hhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCch
Q 044808 468 DGSDPLLLFGYGSYGLGPSS-------------YSNSIA--SRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNT 532 (623)
Q Consensus 468 ~~~~P~il~~~Gg~~~~~~~-------------~~~~~~--~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~ 532 (623)
..+.|+|++.-||||.+... +++... .--.|++.+=.|++=.+=|. ||...-..+. .......
T Consensus 98 p~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~adLvFiDqPvGT-GfS~a~~~e~-~~d~~~~ 175 (498)
T COG2939 98 PANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDFADLVFIDQPVGT-GFSRALGDEK-KKDFEGA 175 (498)
T ss_pred CCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccCCceEEEecCccc-Cccccccccc-ccchhcc
Confidence 35689999999999976321 111101 23578888766655335554 3444311111 1222334
Q ss_pred HhHHHHHHHHHHHc-CCCCC--CcEEEEEeChHHHHHHH----HHHh--CCC---eeeEEEecCC-ccchhhh
Q 044808 533 FTDFIACADYLIKS-NYCSE--DNLCIEGGSAGGMLIGA----VLNM--RPE---LFKVAVADVP-SVDVLTT 592 (623)
Q Consensus 533 ~~D~~~~~~~l~~~-~~~d~--~ri~i~G~S~GG~l~~~----~~~~--~p~---~f~a~v~~~~-~~d~~~~ 592 (623)
-.|+....+...+. +--.. .+..|.|-||||.=... ++.+ .++ +++.+.-..| -+|.++.
T Consensus 176 ~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~L~~~~~~~~~~~nlssvligng~~t~Pl~~ 248 (498)
T COG2939 176 GKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHELLEDNIALNGNVNLSSVLIGNGLWTDPLTQ 248 (498)
T ss_pred chhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHHHHHhccccCCceEeeeeeecCCcccChhHH
Confidence 46777766654431 11112 48899999999985433 3332 133 3566666666 5665543
No 388
>PRK04940 hypothetical protein; Provisional
Probab=81.98 E-value=4.2 Score=38.00 Aligned_cols=63 Identities=13% Similarity=0.050 Sum_probs=39.8
Q ss_pred CcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccchhhhhhC---CCCcccHHHHhhcccccccccc
Q 044808 552 DNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVDVLTTILF---YPRKRDLEIATSVVTLKISSRS 617 (623)
Q Consensus 552 ~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 617 (623)
+++++.|.|-|||.+.+++.++. .+|+ ...|.+.....|.+ .......--...+.+||+.+.+
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~~aV-LiNPAv~P~~~L~~~ig~~~~y~~~~~~h~~eL~~~~p~ 125 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--IRQV-IFNPNLFPEENMEGKIDRPEEYADIATKCVTNFREKNRD 125 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--CCEE-EECCCCChHHHHHHHhCCCcchhhhhHHHHHHhhhcCcc
Confidence 46999999999999999988763 3554 45688877554322 1111222224556666666555
No 389
>PF10605 3HBOH: 3HB-oligomer hydrolase (3HBOH) ; InterPro: IPR016582 This entry represents a group of predicted D-(-)-3-hydroxybutyrate oligomer hydrolases (also known as 3HB-oligomer hydrolase), which function in the degradation of poly-3-hydroxybutyrate (PHB). These enzymes catalyse the hydrolysis of D(-)-3-hydroxybutyrate oligomers (3HB-oligomers) into 3HB-monomers [, ].; GO: 0047989 hydroxybutyrate-dimer hydrolase activity, 0019605 butyrate metabolic process, 0005615 extracellular space
Probab=81.96 E-value=25 Score=38.87 Aligned_cols=37 Identities=22% Similarity=0.210 Sum_probs=29.8
Q ss_pred EEEEEeChHHHHHHHHHHhCCC-eeeEEEecCCccchh
Q 044808 554 LCIEGGSAGGMLIGAVLNMRPE-LFKVAVADVPSVDVL 590 (623)
Q Consensus 554 i~i~G~S~GG~l~~~~~~~~p~-~f~a~v~~~~~~d~~ 590 (623)
|...+.|+||..+++++-|..+ ++.++++.-|.+++.
T Consensus 287 VIAssvSNGGgAal~AAEqD~~glIdgVvv~EP~v~~~ 324 (690)
T PF10605_consen 287 VIASSVSNGGGAALAAAEQDTQGLIDGVVVSEPNVNLP 324 (690)
T ss_pred EEEEeecCccHHHHhHhhcccCCceeeEEecCCccCCC
Confidence 3345799999999999987554 788888888988875
No 390
>KOG4328 consensus WD40 protein [Function unknown]
Probab=81.87 E-value=35 Score=36.16 Aligned_cols=192 Identities=12% Similarity=0.150 Sum_probs=99.8
Q ss_pred EEeeeEECCCCC--EEEEEEeCceEEEEECCCCCcccccc----Cc---cceeEEecCC--eEEEEEeCCCCCCeEEEEE
Q 044808 151 RITAFKVSPNNK--LVAFRENCGTVCVIDSETGAPAEKPI----QG---CLEFEWAGDE--AFLYTRRNAIAEPQVWFHK 219 (623)
Q Consensus 151 ~l~~~~~SPDG~--~lA~~~~~~~l~v~dl~tg~~~~~~i----~~---~~~~~WspDg--~l~y~~~d~~~~~~v~~~~ 219 (623)
.+..++|-|-.. .||.+...++|-+||+.+.+...+.+ +. +.++.|+|.+ ++|-+++|.. +...+
T Consensus 188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt----iR~~D 263 (498)
T KOG4328|consen 188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT----IRLQD 263 (498)
T ss_pred ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce----eeeee
Confidence 456677777665 56665555599999997544332211 12 3458999988 5766676653 66777
Q ss_pred CCCCCcccEEEEee-cCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-ceeecCCCcccee-EEEEeeCCEEE
Q 044808 220 LGEEQSKDTCLYRT-REDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-TLWFLPPWHLGID-MFVSHRGNQFF 296 (623)
Q Consensus 220 lgt~~~~d~lv~~~-~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l~~~~~~~~-~~~~~dg~~ly 296 (623)
+.+...+ +|+.. .+..++.+..++.+.+-+++..+-. ..-++|+.++. +...+.-.+..+. ..+.|-..+++
T Consensus 264 ~~~~i~e--~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G---~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~l 338 (498)
T KOG4328|consen 264 FEGNISE--EVLSLDTDNIWFSSLDFSAESRSVLFGDNVG---NFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFL 338 (498)
T ss_pred ecchhhH--HHhhcCccceeeeeccccCCCccEEEeeccc---ceEEEEeecCCccchhhhhhhcccceeecCCCCchhe
Confidence 7766432 23332 2233555667777777776643322 44455655544 2222222222222 24555556666
Q ss_pred E-EeCCCCCCeEEEEEeCCC--CCce-ee-EEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEEC
Q 044808 297 I-RRSDGGFHSDVLTCPVDN--TFET-TV-LIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCL 358 (623)
Q Consensus 297 ~-sn~~g~~~~~L~~~d~~~--~~~~-~~-li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l 358 (623)
+ ...++ ..+|| |+.. +... -. .++|..-+.-.-+++.+..|+-...++ .|.+++-
T Consensus 339 aT~s~D~--T~kIW--D~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~---~IRv~ds 398 (498)
T KOG4328|consen 339 ATASLDQ--TAKIW--DLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN---EIRVFDS 398 (498)
T ss_pred eecccCc--ceeee--ehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC---ceEEeec
Confidence 6 33331 23454 3322 1111 11 445544333334556666655444433 4777765
No 391
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=81.69 E-value=93 Score=34.67 Aligned_cols=74 Identities=11% Similarity=0.067 Sum_probs=42.1
Q ss_pred EEEeeCCEEEE-EeC----CCC----C---CeEEEEEeCCCCCceee---EEcCCC-Cc------eEeEEEEeCC--EEE
Q 044808 287 FVSHRGNQFFI-RRS----DGG----F---HSDVLTCPVDNTFETTV---LIPHRE-RV------RVEEVRLFAD--HIA 342 (623)
Q Consensus 287 ~~~~dg~~ly~-sn~----~g~----~---~~~L~~~d~~~~~~~~~---li~~~~-d~------~i~~~~~~~~--~Lv 342 (623)
.+++.-+.+|+ +.. .+. + ...|+.+|+++++. +| .++++. |. .+-++...++ .++
T Consensus 240 s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~-~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v 318 (527)
T TIGR03075 240 SYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKI-KWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLL 318 (527)
T ss_pred eEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCE-EEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEE
Confidence 35566788999 633 110 1 23789999998863 57 444431 11 1222222333 477
Q ss_pred EEEeeCCcceEEEEECCCCCCC
Q 044808 343 VYELEEGLPKITTYCLPPVGEP 364 (623)
Q Consensus 343 ~~~~~~g~~~l~v~~l~~~g~~ 364 (623)
+...++|. ++++|..+ |+.
T Consensus 319 ~~~~K~G~--~~vlDr~t-G~~ 337 (527)
T TIGR03075 319 AHADRNGF--FYVLDRTN-GKL 337 (527)
T ss_pred EEeCCCce--EEEEECCC-Cce
Confidence 77777774 78888765 653
No 392
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=81.63 E-value=51 Score=33.59 Aligned_cols=116 Identities=12% Similarity=0.099 Sum_probs=69.3
Q ss_pred CcEEEeeeEECCCC-CEEEEEEeCceEEEEECCCCCccccccC--c-cceeEEecCC-eEEEEEeCCCCCCeEEEEECCC
Q 044808 148 ENYRITAFKVSPNN-KLVAFRENCGTVCVIDSETGAPAEKPIQ--G-CLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGE 222 (623)
Q Consensus 148 ~~~~l~~~~~SPDG-~~lA~~~~~~~l~v~dl~tg~~~~~~i~--~-~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt 222 (623)
.+|..+..-=+-+| -+||.+-..+.|+|+|+.+++....-+. + +..+.+-|+. .++.+...+. .|.+|++.+
T Consensus 91 sfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~---svRlwnI~~ 167 (385)
T KOG1034|consen 91 SFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDH---SVRLWNIQT 167 (385)
T ss_pred ceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCc---eEEEEeccC
Confidence 45544333333332 2566665555999999999886542111 1 2237888998 7777764321 588899987
Q ss_pred CCcccEEEEee--cCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCC
Q 044808 223 EQSKDTCLYRT--REDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRP 271 (623)
Q Consensus 223 ~~~~d~lv~~~--~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~ 271 (623)
... +.||.. .+-.-.+++.++.||.+|+ +.+....|-+.++..+
T Consensus 168 ~~C--v~VfGG~egHrdeVLSvD~~~~gd~i~---ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 168 DVC--VAVFGGVEGHRDEVLSVDFSLDGDRIA---SCGMDHSLKLWRLNVK 213 (385)
T ss_pred CeE--EEEecccccccCcEEEEEEcCCCCeee---ccCCcceEEEEecChh
Confidence 632 567753 2333467899999999764 3334444555555443
No 393
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=81.57 E-value=40 Score=32.54 Aligned_cols=111 Identities=8% Similarity=0.020 Sum_probs=60.8
Q ss_pred EEeeCCEEEEEeCCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCCCccc
Q 044808 288 VSHRGNQFFIRRSDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGEPLKT 367 (623)
Q Consensus 288 ~~~dg~~ly~sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~ 367 (623)
...+++.+|+.+. ...|+.+|..+++ ..|-......... .....++.+++... ++ +|+.++..+ |+.+
T Consensus 32 ~~~~~~~v~~~~~----~~~l~~~d~~tG~-~~W~~~~~~~~~~-~~~~~~~~v~v~~~-~~--~l~~~d~~t-G~~~-- 99 (238)
T PF13360_consen 32 AVPDGGRVYVASG----DGNLYALDAKTGK-VLWRFDLPGPISG-APVVDGGRVYVGTS-DG--SLYALDAKT-GKVL-- 99 (238)
T ss_dssp EEEETTEEEEEET----TSEEEEEETTTSE-EEEEEECSSCGGS-GEEEETTEEEEEET-TS--EEEEEETTT-SCEE--
T ss_pred EEEeCCEEEEEcC----CCEEEEEECCCCC-EEEEeeccccccc-eeeecccccccccc-ee--eeEecccCC-ccee--
Confidence 3457888888322 2479999987775 3563333222111 13556778877763 33 788898665 6632
Q ss_pred ccCCcee-ec--CCCceEEEeeeccccCCcCCceEEEEeecCCCCCeEEEEECCCCcEE
Q 044808 368 LQGGRTV-DI--FKSELCISRIHGIRDSQFSSSILRICFYTMRMPFSAYDYDMNTGISV 423 (623)
Q Consensus 368 l~~~~~i-~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~ 423 (623)
..+ .. +..... ........++.+++... ...++.+|+++|+..
T Consensus 100 ----W~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 100 ----WSIYLTSSPPAGVR-----SSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLL 145 (238)
T ss_dssp ----EEEEE-SSCTCSTB-------SEEEEETTEEEEEET----CSEEEEEETTTTEEE
T ss_pred ----eeeccccccccccc-----cccCceEecCEEEEEec----cCcEEEEecCCCcEE
Confidence 111 11 111100 01111223555655433 779999999999863
No 394
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=81.35 E-value=3.3 Score=44.09 Aligned_cols=58 Identities=16% Similarity=0.374 Sum_probs=38.7
Q ss_pred cEEEeeeEECCCCCEEEEEEeCceEEEEECCCC-Cccc--cccCc--cceeEEecCCeEEEEE
Q 044808 149 NYRITAFKVSPNNKLVAFRENCGTVCVIDSETG-APAE--KPIQG--CLEFEWAGDEAFLYTR 206 (623)
Q Consensus 149 ~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg-~~~~--~~i~~--~~~~~WspDg~l~y~~ 206 (623)
.-.|+.+++||||.+||.++.++.||++-+..+ ..+. ....+ +..+.||+|++++.+.
T Consensus 447 ~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 447 NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSN 509 (626)
T ss_pred CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEec
Confidence 446788999999999999988775666555433 2221 11222 1238999999776654
No 395
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=81.17 E-value=66 Score=32.63 Aligned_cols=66 Identities=18% Similarity=0.288 Sum_probs=43.3
Q ss_pred EEeeeEECCCCCEEEEEEeCc-eEEEEECCCCCccc-cccCccc-eeEEecCC-eEEEEEeCCCCCCeEEEEECCC
Q 044808 151 RITAFKVSPNNKLVAFRENCG-TVCVIDSETGAPAE-KPIQGCL-EFEWAGDE-AFLYTRRNAIAEPQVWFHKLGE 222 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~-~~i~~~~-~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt 222 (623)
.+..+++.|.||+ |.++... .|+.|||-.|+.-- ..+.+.. .+.|+|.| +|+....+ .|=.+.+++
T Consensus 129 ~Vt~lsiHPS~KL-ALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-----~i~i~q~d~ 198 (362)
T KOG0294|consen 129 QVTDLSIHPSGKL-ALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-----KIDIYQLDN 198 (362)
T ss_pred ccceeEecCCCce-EEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-----EEEEEeccc
Confidence 3788999999985 4554443 89999998887422 1344333 39999999 66665432 344455544
No 396
>PRK13614 lipoprotein LpqB; Provisional
Probab=80.98 E-value=95 Score=34.87 Aligned_cols=158 Identities=15% Similarity=0.011 Sum_probs=81.7
Q ss_pred EEeeeEECCCCCEEEEEEeCc-eEEEEECCCCCccccccCcc--ceeEEecCCeEEEEEeCCCCCC-eEEEEEC-CCCCc
Q 044808 151 RITAFKVSPNNKLVAFRENCG-TVCVIDSETGAPAEKPIQGC--LEFEWAGDEAFLYTRRNAIAEP-QVWFHKL-GEEQS 225 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~~~i~~~--~~~~WspDg~l~y~~~d~~~~~-~v~~~~l-gt~~~ 225 (623)
.+..+.+|+||+.+|+..... .+++... |......+.+. ..+.|.++|.++ +..+. .+ +|.+.+- +++..
T Consensus 344 ~~~s~avS~~g~~~A~~~~~~~~l~~~~~--g~~~~~~~~g~~Lt~PS~d~~g~vW-tv~~g--~~~~vv~~~~~g~~~~ 418 (573)
T PRK13614 344 GPASPAESPVSQTVAFLNGSRTTLYTVSP--GQPARALTSGSTLTRPSFSPQDWVW-TAGPG--GNGRIVAYRPTGVAEG 418 (573)
T ss_pred cccceeecCCCceEEEecCCCcEEEEecC--CCcceeeecCCCccCCcccCCCCEE-EeeCC--CCceEEEEecCCCccc
Confidence 456789999999999986655 7776655 22322223322 237888887333 33332 23 4555332 22110
Q ss_pred --ccEEEE--eecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECC---CCCceeecCCC-c-----cceeEEEEeeC
Q 044808 226 --KDTCLY--RTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVS---RPETLWFLPPW-H-----LGIDMFVSHRG 292 (623)
Q Consensus 226 --~d~lv~--~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~---~~~~~~~l~~~-~-----~~~~~~~~~dg 292 (623)
.+.... ...+..-...+.+|+||-.+++.....+...|++.-+. ++ .++.|... . .-....|. ++
T Consensus 419 ~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G-~P~~L~~~~~~~~~~~~~sl~W~-~~ 496 (573)
T PRK13614 419 AQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDG-TPRELTAPITLAADSDADTGAWV-GD 496 (573)
T ss_pred ccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCC-CeEEccCceecccCCCcceeEEc-CC
Confidence 011011 11112224567899999998887755555567764332 23 23444321 1 11122343 45
Q ss_pred CEEEE-EeCCCCCCeEEEEEeCCCC
Q 044808 293 NQFFI-RRSDGGFHSDVLTCPVDNT 316 (623)
Q Consensus 293 ~~ly~-sn~~g~~~~~L~~~d~~~~ 316 (623)
+.|++ +... ..+..++.+.+..+
T Consensus 497 ~sl~V~~~~~-~~~~~~~~v~v~~g 520 (573)
T PRK13614 497 STVVVTKASA-TSNVVPELLSVDAG 520 (573)
T ss_pred CEEEEEeccC-CCcceEEEEEeCCC
Confidence 67877 6544 23455666666433
No 397
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=80.63 E-value=45 Score=39.79 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=28.4
Q ss_pred ceEEeechhhcccCCCCcE--EEeeeEECCCCCEEEEEEeCceEEEEE
Q 044808 132 EEVIIDEEVIKYKNSLENY--RITAFKVSPNNKLVAFRENCGTVCVID 177 (623)
Q Consensus 132 ~~vllD~n~~a~~~~~~~~--~l~~~~~SPDG~~lA~~~~~~~l~v~d 177 (623)
.-++.||.+..-.- .|.+ -|...+||||++.+|+.....+|.+++
T Consensus 91 ~iilvd~et~~~ei-vg~vd~GI~aaswS~Dee~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 91 DIILVDPETLELEI-VGNVDNGISAASWSPDEELLALITGRQTLLFMT 137 (1265)
T ss_pred cEEEEcccccceee-eeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence 45556666543210 0222 356789999999999997765565554
No 398
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=80.63 E-value=1.4e+02 Score=35.98 Aligned_cols=57 Identities=16% Similarity=0.263 Sum_probs=36.7
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccc-cccC-ccceeEEecCC-eEEEEEe
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAE-KPIQ-GCLEFEWAGDE-AFLYTRR 207 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~-~~i~-~~~~~~WspDg-~l~y~~~ 207 (623)
.|-++.+=-|+.-|.++...+.|.+.|+++....- ..++ ++...+||||. .+.+++.
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~ 129 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITG 129 (1265)
T ss_pred ceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeC
Confidence 35556666677777777666677777888776431 1222 23348999999 6666654
No 399
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=80.41 E-value=84 Score=33.32 Aligned_cols=179 Identities=12% Similarity=0.117 Sum_probs=94.5
Q ss_pred CCEEEEEEeCceEEEEECCCCC-cccc-ccC------------------ccc----eeEEecCC-eEEEEEeCCCCCCeE
Q 044808 161 NKLVAFRENCGTVCVIDSETGA-PAEK-PIQ------------------GCL----EFEWAGDE-AFLYTRRNAIAEPQV 215 (623)
Q Consensus 161 G~~lA~~~~~~~l~v~dl~tg~-~~~~-~i~------------------~~~----~~~WspDg-~l~y~~~d~~~~~~v 215 (623)
|+++|.+.-...|.||||.--. +++. .+. +-. .+.|.-+- .++.+...+ ..|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD---~TV 268 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSAD---KTV 268 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCC---ceE
Confidence 5688888655589999986422 1111 000 001 25565444 344433211 168
Q ss_pred EEEECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC----ceeecCCCcccee-EEEEe
Q 044808 216 WFHKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE----TLWFLPPWHLGID-MFVSH 290 (623)
Q Consensus 216 ~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~----~~~~l~~~~~~~~-~~~~~ 290 (623)
.++++.+++....+-.... -.-.+.|.|..-.+++.. .....+-+.|+..+. .|+ ....++ ..|.|
T Consensus 269 ~lWD~~~g~p~~s~~~~~k---~Vq~l~wh~~~p~~LLsG--s~D~~V~l~D~R~~~~s~~~wk----~~g~VEkv~w~~ 339 (463)
T KOG0270|consen 269 KLWDVDTGKPKSSITHHGK---KVQTLEWHPYEPSVLLSG--SYDGTVALKDCRDPSNSGKEWK----FDGEVEKVAWDP 339 (463)
T ss_pred EEEEcCCCCcceehhhcCC---ceeEEEecCCCceEEEec--cccceEEeeeccCccccCceEE----eccceEEEEecC
Confidence 8888888764332221211 123356666555544422 223456667766432 222 112223 24666
Q ss_pred eCCEEEE-EeCCCCCCeEEEEEeCCCCCceee-EEcCCCCceEeEEEEeC--CEEEEEEeeCCcceEEEEECC
Q 044808 291 RGNQFFI-RRSDGGFHSDVLTCPVDNTFETTV-LIPHRERVRVEEVRLFA--DHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 291 dg~~ly~-sn~~g~~~~~L~~~d~~~~~~~~~-li~~~~d~~i~~~~~~~--~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
.....++ +..+ +.|+-+|+.+++..-| +.+|+. .|.++++.. ..++.+...++. +.+++++
T Consensus 340 ~se~~f~~~tdd----G~v~~~D~R~~~~~vwt~~AHd~--~ISgl~~n~~~p~~l~t~s~d~~--Vklw~~~ 404 (463)
T KOG0270|consen 340 HSENSFFVSTDD----GTVYYFDIRNPGKPVWTLKAHDD--EISGLSVNIQTPGLLSTASTDKV--VKLWKFD 404 (463)
T ss_pred CCceeEEEecCC----ceEEeeecCCCCCceeEEEeccC--CcceEEecCCCCcceeeccccce--EEEEeec
Confidence 6655555 5444 4799999888766667 666654 477777654 456666555544 4455554
No 400
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=80.15 E-value=33 Score=34.46 Aligned_cols=126 Identities=15% Similarity=0.150 Sum_probs=70.4
Q ss_pred cEEEeeeEECCCCCEEEEEEeCceEEEEECCCCCccc---cccCccceeEEecCCe-EEEEEeCCCCCCeEEEEECC--C
Q 044808 149 NYRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAE---KPIQGCLEFEWAGDEA-FLYTRRNAIAEPQVWFHKLG--E 222 (623)
Q Consensus 149 ~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~---~~i~~~~~~~WspDg~-l~y~~~d~~~~~~v~~~~lg--t 222 (623)
.+.+.++.|..++..+--+-=.+.|.+||+..++.+- -..+.+.++.-+++|. +.-...|. .+.++++. -
T Consensus 174 kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~----tvrvwd~rp~~ 249 (338)
T KOG0265|consen 174 KYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDN----TVRVWDVRPFA 249 (338)
T ss_pred ceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccc----eEEEEEecccC
Confidence 4556666777666665444222278899986665432 1112233577788884 43333333 23333332 2
Q ss_pred CCccc-EEEEeecCCce---eEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccc
Q 044808 223 EQSKD-TCLYRTREDLF---DLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLG 283 (623)
Q Consensus 223 ~~~~d-~lv~~~~~~~~---~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~ 283 (623)
+. ++ +.||+...-.| .+.++|||+++++-..+.+ ..+|+.|..... ....+|...+
T Consensus 250 p~-~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~d---r~vyvwd~~~r~-~lyklpGh~g 309 (338)
T KOG0265|consen 250 PS-QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSAD---RFVYVWDTTSRR-ILYKLPGHYG 309 (338)
T ss_pred CC-CceEEEeecchhhhhhhcceeeccCCCCcccccccc---ceEEEeeccccc-EEEEcCCcce
Confidence 22 33 66777543333 4578899999998765443 467888876543 3334454444
No 401
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=80.10 E-value=37 Score=37.31 Aligned_cols=100 Identities=18% Similarity=0.218 Sum_probs=53.3
Q ss_pred EEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcccee-EEEEeeCCEEEE-EeCCCCCCeEEEEEeCCCCC
Q 044808 240 LTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGID-MFVSHRGNQFFI-RRSDGGFHSDVLTCPVDNTF 317 (623)
Q Consensus 240 ~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~-~~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~ 317 (623)
..+.+.|.-.++++.+. ..|.+.|+....-.+.+.+...-+. .++.+.|+.|++ +... +++.+|++-..
T Consensus 570 q~v~FHPs~p~lfVaTq----~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~-----k~~WfDldlss 640 (733)
T KOG0650|consen 570 QRVKFHPSKPYLFVATQ----RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDK-----KMCWFDLDLSS 640 (733)
T ss_pred eEEEecCCCceEEEEec----cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCC-----eeEEEEcccCc
Confidence 44667888888877543 4577778765432233333322222 246788888888 5543 67777765332
Q ss_pred ceee-EEcCCCCceEeEEEEeCCE-EEEEEeeCCc
Q 044808 318 ETTV-LIPHRERVRVEEVRLFADH-IAVYELEEGL 350 (623)
Q Consensus 318 ~~~~-li~~~~d~~i~~~~~~~~~-Lv~~~~~~g~ 350 (623)
. .+ -+-.+++ .+.++.....+ |+.+..++|.
T Consensus 641 k-Pyk~lr~H~~-avr~Va~H~ryPLfas~sdDgt 673 (733)
T KOG0650|consen 641 K-PYKTLRLHEK-AVRSVAFHKRYPLFASGSDDGT 673 (733)
T ss_pred c-hhHHhhhhhh-hhhhhhhccccceeeeecCCCc
Confidence 1 12 1112222 24455544443 5555555554
No 402
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=79.99 E-value=4 Score=43.47 Aligned_cols=84 Identities=11% Similarity=0.044 Sum_probs=59.0
Q ss_pred hhhHHHHHCCcEEEEEeccCCCcCChhHHHcccc--cCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHH
Q 044808 493 ASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKL--LNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVL 570 (623)
Q Consensus 493 ~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~--~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~ 570 (623)
.....|++ |+-|.+.|-+ .+..- ..+.-.++|.++.+.-.++. +-++ +-++|.+.||.++++++
T Consensus 121 S~V~~Ll~-g~dVYl~DW~----------~p~~vp~~~~~f~ldDYi~~l~~~i~~--~G~~-v~l~GvCqgG~~~laa~ 186 (406)
T TIGR01849 121 STVEALLP-DHDVYITDWV----------NARMVPLSAGKFDLEDYIDYLIEFIRF--LGPD-IHVIAVCQPAVPVLAAV 186 (406)
T ss_pred HHHHHHhC-CCcEEEEeCC----------CCCCCchhcCCCCHHHHHHHHHHHHHH--hCCC-CcEEEEchhhHHHHHHH
Confidence 55678888 9999998744 33322 24566788888655544432 3455 99999999999987666
Q ss_pred HhC-----CCeeeEEEecCCccchh
Q 044808 571 NMR-----PELFKVAVADVPSVDVL 590 (623)
Q Consensus 571 ~~~-----p~~f~a~v~~~~~~d~~ 590 (623)
+.. |+..+..+...+.+|.-
T Consensus 187 Al~a~~~~p~~~~sltlm~~PID~~ 211 (406)
T TIGR01849 187 ALMAENEPPAQPRSMTLMGGPIDAR 211 (406)
T ss_pred HHHHhcCCCCCcceEEEEecCccCC
Confidence 554 55688888888888863
No 403
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=79.89 E-value=38 Score=32.44 Aligned_cols=114 Identities=15% Similarity=0.205 Sum_probs=68.3
Q ss_pred CCcEEEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccC---ccceeEEecCCeEEEE-EeCCCCCCeEEEEECCC
Q 044808 147 LENYRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQ---GCLEFEWAGDEAFLYT-RRNAIAEPQVWFHKLGE 222 (623)
Q Consensus 147 ~~~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~---~~~~~~WspDg~l~y~-~~d~~~~~~v~~~~lgt 222 (623)
++.-.+..+.+.|.|++||-+-......++|+.+|++++.--+ .+..+.|||....+.+ ++|. +|.+-++..
T Consensus 229 lessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~----~ikltdlqg 304 (350)
T KOG0641|consen 229 LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDM----KIKLTDLQG 304 (350)
T ss_pred cccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccc----eEEEeeccc
Confidence 4566788899999999999987666677789999998874223 2345999997744334 4443 455556543
Q ss_pred CCc--ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEE
Q 044808 223 EQS--KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYF 266 (623)
Q Consensus 223 ~~~--~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~ 266 (623)
.-. -..+|..|... -.+.+.|.|.. +-|+.++...+..+|.+
T Consensus 305 dla~el~~~vv~ehkd-k~i~~rwh~~d-~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 305 DLAHELPIMVVAEHKD-KAIQCRWHPQD-FSFISSSADKTATLWAL 348 (350)
T ss_pred chhhcCceEEEEeccC-ceEEEEecCcc-ceeeeccCcceEEEecc
Confidence 211 12334333222 24556777754 33444433334556544
No 404
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=79.84 E-value=67 Score=31.87 Aligned_cols=188 Identities=14% Similarity=0.160 Sum_probs=99.0
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCccceeEEec----CCeEEEEEeCCCCCCeEEEEECCCCCcc
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQGCLEFEWAG----DEAFLYTRRNAIAEPQVWFHKLGEEQSK 226 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~~~~~~Wsp----Dg~l~y~~~d~~~~~~v~~~~lgt~~~~ 226 (623)
.|..++...||.+|--.......-||---.|+.+- +..+-.+..|+= |++.+.+-..+ . .+.++++.+++.
T Consensus 12 plTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG-ty~GHtGavW~~Did~~s~~liTGSAD--~-t~kLWDv~tGk~- 86 (327)
T KOG0643|consen 12 PLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG-TYDGHTGAVWCCDIDWDSKHLITGSAD--Q-TAKLWDVETGKQ- 86 (327)
T ss_pred ccceEEecCCCcEEEEecCCCCceEEEecCCceee-eecCCCceEEEEEecCCcceeeecccc--c-eeEEEEcCCCcE-
Confidence 45667888888865444333345555555677664 344444455542 33444443211 1 356677777742
Q ss_pred cEEEEeecCCceeEEEEEcCCCcEEEEEeecc--eeeEEEEEECCCCC------c-eeecCCCcccee-EEEEeeCCEEE
Q 044808 227 DTCLYRTREDLFDLTLEASESKKFLFVKSKTK--VTGFVYYFDVSRPE------T-LWFLPPWHLGID-MFVSHRGNQFF 296 (623)
Q Consensus 227 d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~--~~s~l~~~dl~~~~------~-~~~l~~~~~~~~-~~~~~dg~~ly 296 (623)
++.-+-+.-.-.+.++.+|.++++..... ..+.|.+.++.... + ...+......+. .-|++-++.|+
T Consensus 87 ---la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii 163 (327)
T KOG0643|consen 87 ---LATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETII 163 (327)
T ss_pred ---EEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEE
Confidence 33222121223567899999988876442 35677788776321 2 222322223332 24677666554
Q ss_pred EEeCCCCCCeEEEEEeCCCCCceeeEEcCC--CCceEeEEEEeCC-EEEEEEeeCCcceE
Q 044808 297 IRRSDGGFHSDVLTCPVDNTFETTVLIPHR--ERVRVEEVRLFAD-HIAVYELEEGLPKI 353 (623)
Q Consensus 297 ~sn~~g~~~~~L~~~d~~~~~~~~~li~~~--~d~~i~~~~~~~~-~Lv~~~~~~g~~~l 353 (623)
....+ +.|-.+|+.++.. ++... ....|.++....+ ..++....+...+|
T Consensus 164 ~Ghe~----G~is~~da~~g~~---~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl 216 (327)
T KOG0643|consen 164 AGHED----GSISIYDARTGKE---LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKL 216 (327)
T ss_pred EecCC----CcEEEEEcccCce---eeechhhhccccccccccCCcceEEecccCcccee
Confidence 43322 4677788877532 22211 1225677777765 45555555555444
No 405
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=79.24 E-value=31 Score=35.22 Aligned_cols=203 Identities=15% Similarity=0.191 Sum_probs=100.0
Q ss_pred eEEeechhhcccCC-CCcEEEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCccc---eeEEecCCeEEEEEeC
Q 044808 133 EVIIDEEVIKYKNS-LENYRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQGCL---EFEWAGDEAFLYTRRN 208 (623)
Q Consensus 133 ~vllD~n~~a~~~~-~~~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~~~---~~~WspDg~l~y~~~d 208 (623)
--+.|-|.+.--.. .|+. =+.+.+--|.+.|.-+++..++.|||+++|+++..-|..+. .+.++. | +..+...
T Consensus 219 ikiWD~n~~~c~~~L~GHt-GSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n-g-~mvtcSk 295 (499)
T KOG0281|consen 219 IKIWDKNSLECLKILTGHT-GSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN-G-YMVTCSK 295 (499)
T ss_pred eEEeccccHHHHHhhhcCC-CcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC-C-EEEEecC
Confidence 34577776541100 0111 12346667778777777666999999999999875555554 366643 3 4444432
Q ss_pred CCCCC-eEEEEECCCCCcc--cEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCcccee
Q 044808 209 AIAEP-QVWFHKLGEEQSK--DTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGID 285 (623)
Q Consensus 209 ~~~~~-~v~~~~lgt~~~~--d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~ 285 (623)
.+. .||. +.++... ..++.. .-. .++ .+.=|.+||+- ++ +...|-+.+..+..-.+.+.....|+.
T Consensus 296 --DrsiaVWd--m~sps~it~rrVLvG-HrA--aVN-vVdfd~kyIVs-AS--gDRTikvW~~st~efvRtl~gHkRGIA 364 (499)
T KOG0281|consen 296 --DRSIAVWD--MASPTDITLRRVLVG-HRA--AVN-VVDFDDKYIVS-AS--GDRTIKVWSTSTCEFVRTLNGHKRGIA 364 (499)
T ss_pred --CceeEEEe--ccCchHHHHHHHHhh-hhh--hee-eeccccceEEE-ec--CCceEEEEeccceeeehhhhcccccce
Confidence 233 4544 4443210 011111 001 111 12335565442 22 234455566666542333444555543
Q ss_pred EEEEeeCCEEEE-EeCCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCC
Q 044808 286 MFVSHRGNQFFI-RRSDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPP 360 (623)
Q Consensus 286 ~~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~ 360 (623)
. .-..++|.+ ...+ ..|-..|++.+..-+ ++.++++ .+.-+...+++++ +...+|. |.++++.+
T Consensus 365 C--lQYr~rlvVSGSSD----ntIRlwdi~~G~cLR-vLeGHEe-LvRciRFd~krIV-SGaYDGk--ikvWdl~a 429 (499)
T KOG0281|consen 365 C--LQYRDRLVVSGSSD----NTIRLWDIECGACLR-VLEGHEE-LVRCIRFDNKRIV-SGAYDGK--IKVWDLQA 429 (499)
T ss_pred e--hhccCeEEEecCCC----ceEEEEeccccHHHH-HHhchHH-hhhheeecCceee-eccccce--EEEEeccc
Confidence 2 112466777 3333 245555666554222 4555554 3445554445544 4445554 77778764
No 406
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=79.07 E-value=3.8 Score=38.56 Aligned_cols=75 Identities=11% Similarity=0.068 Sum_probs=53.3
Q ss_pred hhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC
Q 044808 494 SRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMR 573 (623)
Q Consensus 494 ~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~ 573 (623)
....|.++|+.|+-+|-+ +-|.. ...-...-.|+...+++..++-- ..|+.+.|.|+|.=++-.+.++-
T Consensus 21 ~a~~l~~~G~~VvGvdsl------~Yfw~---~rtP~~~a~Dl~~~i~~y~~~w~--~~~vvLiGYSFGADvlP~~~nrL 89 (192)
T PF06057_consen 21 IAEALAKQGVPVVGVDSL------RYFWS---ERTPEQTAADLARIIRHYRARWG--RKRVVLIGYSFGADVLPFIYNRL 89 (192)
T ss_pred HHHHHHHCCCeEEEechH------HHHhh---hCCHHHHHHHHHHHHHHHHHHhC--CceEEEEeecCCchhHHHHHhhC
Confidence 346888999999999966 22221 12223456787777776665522 47999999999999999999998
Q ss_pred CCeeeE
Q 044808 574 PELFKV 579 (623)
Q Consensus 574 p~~f~a 579 (623)
|.-.++
T Consensus 90 p~~~r~ 95 (192)
T PF06057_consen 90 PAALRA 95 (192)
T ss_pred CHHHHh
Confidence 864333
No 407
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=78.99 E-value=6.1 Score=28.01 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=26.1
Q ss_pred EeeeEECCCCCEEEEEEeCceEEEEECCCCC
Q 044808 152 ITAFKVSPNNKLVAFRENCGTVCVIDSETGA 182 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~ 182 (623)
+..+.|||...+||.+...++|.|..+ +++
T Consensus 14 v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 14 VSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred EEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 667899999999999999888999888 444
No 408
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=78.94 E-value=25 Score=38.06 Aligned_cols=56 Identities=13% Similarity=0.214 Sum_probs=37.1
Q ss_pred EeeeEECCCCCEEEEEEeCceEEEEECCCCCccc---cccCccceeEEecCC-eEEEEEeC
Q 044808 152 ITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAE---KPIQGCLEFEWAGDE-AFLYTRRN 208 (623)
Q Consensus 152 l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~---~~i~~~~~~~WspDg-~l~y~~~d 208 (623)
+..-+|||||.-|.-+-.++.|.+|.- +|-... ..-+.+..++|.|++ .++|...+
T Consensus 107 ~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~ 166 (737)
T KOG1524|consen 107 ISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG 166 (737)
T ss_pred hhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecCC
Confidence 445699999997666554558888864 443221 112234569999999 89998654
No 409
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=78.92 E-value=3.2 Score=44.29 Aligned_cols=87 Identities=15% Similarity=0.164 Sum_probs=55.5
Q ss_pred CCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHH
Q 044808 488 YSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIG 567 (623)
Q Consensus 488 ~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~ 567 (623)
.|. .....|.+.||..- .+++| .+=+|+.+.. ....-+..+...++.+.+.. ..+|.|.|+|+||+++.
T Consensus 66 ~~~--~li~~L~~~GY~~~-~~l~~---~pYDWR~~~~--~~~~~~~~lk~~ie~~~~~~---~~kv~li~HSmGgl~~~ 134 (389)
T PF02450_consen 66 YFA--KLIENLEKLGYDRG-KDLFA---APYDWRLSPA--ERDEYFTKLKQLIEEAYKKN---GKKVVLIAHSMGGLVAR 134 (389)
T ss_pred hHH--HHHHHHHhcCcccC-CEEEE---Eeechhhchh--hHHHHHHHHHHHHHHHHHhc---CCcEEEEEeCCCchHHH
Confidence 455 66778888898742 23333 2347777644 12234455555555555433 58999999999999999
Q ss_pred HHHHhCCC------eeeEEEecCC
Q 044808 568 AVLNMRPE------LFKVAVADVP 585 (623)
Q Consensus 568 ~~~~~~p~------~f~a~v~~~~ 585 (623)
..+...+. ..+..|+.++
T Consensus 135 ~fl~~~~~~~W~~~~i~~~i~i~~ 158 (389)
T PF02450_consen 135 YFLQWMPQEEWKDKYIKRFISIGT 158 (389)
T ss_pred HHHHhccchhhHHhhhhEEEEeCC
Confidence 98887653 2456666554
No 410
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=78.06 E-value=80 Score=31.76 Aligned_cols=77 Identities=17% Similarity=0.072 Sum_probs=46.1
Q ss_pred CceEEeechhhcccCC----CCcEEEeeeEECCCCCEEEEEEeCc-----eEEEEECCCCCccccccC--ccc--eeEEe
Q 044808 131 PEEVIIDEEVIKYKNS----LENYRITAFKVSPNNKLVAFRENCG-----TVCVIDSETGAPAEKPIQ--GCL--EFEWA 197 (623)
Q Consensus 131 ~~~vllD~n~~a~~~~----~~~~~l~~~~~SPDG~~lA~~~~~~-----~l~v~dl~tg~~~~~~i~--~~~--~~~Ws 197 (623)
..-.+||+|.-.+-.. .+-...+.-.+||||++|--+.+.- .|-|+|...+-...-+++ ++. .+.|.
T Consensus 91 tf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm 170 (366)
T COG3490 91 TFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLM 170 (366)
T ss_pred ceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEe
Confidence 4567788876543210 0223345568999999987776432 788888864321111222 333 39999
Q ss_pred cCCeEEEEEe
Q 044808 198 GDEAFLYTRR 207 (623)
Q Consensus 198 pDg~l~y~~~ 207 (623)
+||+++...+
T Consensus 171 ~DGrtlvvan 180 (366)
T COG3490 171 ADGRTLVVAN 180 (366)
T ss_pred cCCcEEEEeC
Confidence 9996655554
No 411
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=77.27 E-value=80 Score=31.32 Aligned_cols=165 Identities=7% Similarity=0.050 Sum_probs=71.7
Q ss_pred ccccccCccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceee
Q 044808 183 PAEKPIQGCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTG 261 (623)
Q Consensus 183 ~~~~~i~~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s 261 (623)
.++....++++++|.||+ +||-+. ++ .+.|+..++. +..-++.-+... .+ .=++....++++++. .. ...
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~-d~--~~~i~els~~-G~vlr~i~l~g~-~D-~EgI~y~g~~~~vl~-~E--r~~ 86 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQ-DE--PGEIYELSLD-GKVLRRIPLDGF-GD-YEGITYLGNGRYVLS-EE--RDQ 86 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEE-TT--TTEEEEEETT---EEEEEE-SS--SS-EEEEEE-STTEEEEE-ET--TTT
T ss_pred ECCCccCCccccEEcCCCCeEEEEE-CC--CCEEEEEcCC-CCEEEEEeCCCC-CC-ceeEEEECCCEEEEE-Ec--CCC
Confidence 333334456789999998 655554 33 1278888864 321112212211 11 124566677766543 21 124
Q ss_pred EEEEEECCCC--C----cee---ecCC--Ccccee-EEEEeeCCEEEE-EeCCCCCCeEEEEEeC--CCCCce-----ee
Q 044808 262 FVYYFDVSRP--E----TLW---FLPP--WHLGID-MFVSHRGNQFFI-RRSDGGFHSDVLTCPV--DNTFET-----TV 321 (623)
Q Consensus 262 ~l~~~dl~~~--~----~~~---~l~~--~~~~~~-~~~~~dg~~ly~-sn~~g~~~~~L~~~d~--~~~~~~-----~~ 321 (623)
.++.+++... . ..+ .-.+ ...+.+ ..+++.++.|++ ..++ + .+|+.++. ...... .|
T Consensus 87 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~--P-~~l~~~~~~~~~~~~~~~~~~~~ 163 (248)
T PF06977_consen 87 RLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK--P-KRLYEVNGFPGGFDLFVSDDQDL 163 (248)
T ss_dssp EEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESS--S-EEEEEEESTT-SS--EEEE-HHH
T ss_pred cEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCC--C-hhhEEEccccCccceeecccccc
Confidence 5666665221 1 111 1122 222333 357888899999 7664 2 56888875 221110 01
Q ss_pred EEcCCCCceEeEEEEe--CCEEEEEEeeCCcceEEEEECCCCCC
Q 044808 322 LIPHRERVRVEEVRLF--ADHIAVYELEEGLPKITTYCLPPVGE 363 (623)
Q Consensus 322 li~~~~d~~i~~~~~~--~~~Lv~~~~~~g~~~l~v~~l~~~g~ 363 (623)
.-....-..+.++... .++|++...+. ..|..++.+ |+
T Consensus 164 ~~~~~~~~d~S~l~~~p~t~~lliLS~es--~~l~~~d~~--G~ 203 (248)
T PF06977_consen 164 DDDKLFVRDLSGLSYDPRTGHLLILSDES--RLLLELDRQ--GR 203 (248)
T ss_dssp H-HT--SS---EEEEETTTTEEEEEETTT--TEEEEE-TT----
T ss_pred ccccceeccccceEEcCCCCeEEEEECCC--CeEEEECCC--CC
Confidence 0000011124555554 36788776544 346666655 65
No 412
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=77.26 E-value=2.9 Score=41.44 Aligned_cols=32 Identities=28% Similarity=0.367 Sum_probs=27.4
Q ss_pred eeeEECCCCCEEEEEEeCceEEEEECCCCCcc
Q 044808 153 TAFKVSPNNKLVAFRENCGTVCVIDSETGAPA 184 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~ 184 (623)
..++||||+..|||+.+.++|+|+|+.+.+..
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf 78 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELF 78 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEecccceeE
Confidence 45699999999999999999999999875543
No 413
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=76.12 E-value=1.1e+02 Score=32.42 Aligned_cols=99 Identities=9% Similarity=0.016 Sum_probs=55.3
Q ss_pred CcEEEEEeecceeeEEEEEECCCCC-ceeecCCCccceeEEEEeeCCEEEE-EeCCCCCCeEEEEEeCCCCCceeeEEcC
Q 044808 248 KKFLFVKSKTKVTGFVYYFDVSRPE-TLWFLPPWHLGIDMFVSHRGNQFFI-RRSDGGFHSDVLTCPVDNTFETTVLIPH 325 (623)
Q Consensus 248 g~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l~~~~~~~~~~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~~~~~li~~ 325 (623)
+..|++... ...++.+|+.+++ .|+.-... ...+...++.+|+ +.. .+|+.+|.+++. ..|-.+.
T Consensus 256 ~~~vy~~~~---~g~l~ald~~tG~~~W~~~~~~----~~~~~~~~~~vy~~~~~-----g~l~ald~~tG~-~~W~~~~ 322 (394)
T PRK11138 256 GGVVYALAY---NGNLVALDLRSGQIVWKREYGS----VNDFAVDGGRIYLVDQN-----DRVYALDTRGGV-ELWSQSD 322 (394)
T ss_pred CCEEEEEEc---CCeEEEEECCCCCEEEeecCCC----ccCcEEECCEEEEEcCC-----CeEEEEECCCCc-EEEcccc
Confidence 345555432 2478999999887 33321111 1123346788999 543 369999988764 3562221
Q ss_pred CCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCC
Q 044808 326 RERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGE 363 (623)
Q Consensus 326 ~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~ 363 (623)
..+.......+.++.|++... +| .|+.++.++ |+
T Consensus 323 ~~~~~~~sp~v~~g~l~v~~~-~G--~l~~ld~~t-G~ 356 (394)
T PRK11138 323 LLHRLLTAPVLYNGYLVVGDS-EG--YLHWINRED-GR 356 (394)
T ss_pred cCCCcccCCEEECCEEEEEeC-CC--EEEEEECCC-CC
Confidence 111122334456777776543 44 488888775 65
No 414
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=76.07 E-value=6.1 Score=43.97 Aligned_cols=110 Identities=13% Similarity=0.205 Sum_probs=66.3
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccC----ccceeEEecCCeEEE-EEeCCCCCCeEEEEECCCCCc
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQ----GCLEFEWAGDEAFLY-TRRNAIAEPQVWFHKLGEEQS 225 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~----~~~~~~WspDg~l~y-~~~d~~~~~~v~~~~lgt~~~ 225 (623)
-|..+.++++..+||-+...++|.|||++.++.+. ++. ++-.+.|.|=+.++- ...+. .+-.+++.....
T Consensus 72 pIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr-tLtgh~~~~~sv~f~P~~~~~a~gStdt----d~~iwD~Rk~Gc 146 (825)
T KOG0267|consen 72 PIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR-TLTGHLLNITSVDFHPYGEFFASGSTDT----DLKIWDIRKKGC 146 (825)
T ss_pred cceeeecCcchhhhcccccCCceeeeehhhhhhhh-hhhccccCcceeeeccceEEeccccccc----cceehhhhccCc
Confidence 46778999999999999887799999999998775 332 344578988875441 11121 233344432211
Q ss_pred ccEEEEeecCCceeE-EEEEcCCCcEEEEEeecceeeEEEEEECCCCC
Q 044808 226 KDTCLYRTREDLFDL-TLEASESKKFLFVKSKTKVTGFVYYFDVSRPE 272 (623)
Q Consensus 226 ~d~lv~~~~~~~~~~-~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~ 272 (623)
.-.|.. +. +.+ .+.++|||+|+.... ..+.+-+.|+..|+
T Consensus 147 --~~~~~s-~~-~vv~~l~lsP~Gr~v~~g~---ed~tvki~d~~agk 187 (825)
T KOG0267|consen 147 --SHTYKS-HT-RVVDVLRLSPDGRWVASGG---EDNTVKIWDLTAGK 187 (825)
T ss_pred --eeeecC-Cc-ceeEEEeecCCCceeeccC---Ccceeeeecccccc
Confidence 223332 22 223 346899999976422 13455556665443
No 415
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=75.89 E-value=6.2 Score=34.88 Aligned_cols=53 Identities=19% Similarity=0.270 Sum_probs=32.2
Q ss_pred HhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh---C----CCeeeEEEecCCcc
Q 044808 533 FTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNM---R----PELFKVAVADVPSV 587 (623)
Q Consensus 533 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~---~----p~~f~a~v~~~~~~ 587 (623)
.+.+...++-+.++.- +.+|.+.|+|-||.++..++.. + +...++.....|-+
T Consensus 47 ~~~~~~~l~~~~~~~~--~~~i~itGHSLGGalA~l~a~~l~~~~~~~~~~~~~~~fg~P~~ 106 (140)
T PF01764_consen 47 YDQILDALKELVEKYP--DYSIVITGHSLGGALASLAAADLASHGPSSSSNVKCYTFGAPRV 106 (140)
T ss_dssp HHHHHHHHHHHHHHST--TSEEEEEEETHHHHHHHHHHHHHHHCTTTSTTTEEEEEES-S--
T ss_pred HHHHHHHHHHHHhccc--CccchhhccchHHHHHHHHHHhhhhcccccccceeeeecCCccc
Confidence 3455555555554433 4899999999999988655543 1 13456666666644
No 416
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.82 E-value=41 Score=33.09 Aligned_cols=128 Identities=18% Similarity=0.082 Sum_probs=66.8
Q ss_pred CCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhh--HHHHHCC-----cEEEEEeccCCCcCChhHH
Q 044808 449 SDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASR--LTILDRG-----IIFAIAHVRGGDEKGKQWH 521 (623)
Q Consensus 449 ~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~--~~~~~~G-----~~v~~~~~RG~~~~G~~~~ 521 (623)
..|..+....+.|--. ......|.|+++=|-||-. +|- .++ ....+.+ |.+--++.-+-. ..-.
T Consensus 8 ~~gl~~si~~~~~~v~-~~~~~~~li~~IpGNPG~~---gFY--~~F~~~L~~~l~~r~~~wtIsh~~H~~~P---~sl~ 78 (301)
T KOG3975|consen 8 KSGLPTSILTLKPWVT-KSGEDKPLIVWIPGNPGLL---GFY--TEFARHLHLNLIDRLPVWTISHAGHALMP---ASLR 78 (301)
T ss_pred ecCCcccceeeeeeec-cCCCCceEEEEecCCCCch---hHH--HHHHHHHHHhcccccceeEEeccccccCC---cccc
Confidence 3455555554555332 3445679999999988754 333 221 1111212 333333222211 1111
Q ss_pred Hcccc-cCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCee--eEEEecCC
Q 044808 522 ENGKL-LNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELF--KVAVADVP 585 (623)
Q Consensus 522 ~~~~~-~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f--~a~v~~~~ 585 (623)
++... ..-.-.++|.+.=--..+++-...-.||.++|+|-|.||++.++-..-+.| .-|++..|
T Consensus 79 ~~~s~~~~eifsL~~QV~HKlaFik~~~Pk~~ki~iiGHSiGaYm~Lqil~~~k~~~~vqKa~~LFP 145 (301)
T KOG3975|consen 79 EDHSHTNEEIFSLQDQVDHKLAFIKEYVPKDRKIYIIGHSIGAYMVLQILPSIKLVFSVQKAVLLFP 145 (301)
T ss_pred cccccccccccchhhHHHHHHHHHHHhCCCCCEEEEEecchhHHHHHHHhhhcccccceEEEEEecc
Confidence 22111 112335666665444444444445589999999999999999886433322 44555556
No 417
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=75.72 E-value=1.1e+02 Score=32.15 Aligned_cols=100 Identities=12% Similarity=0.079 Sum_probs=53.9
Q ss_pred CcEEEEEeecceeeEEEEEECCCCC-ceeecCCCccceeEEEEeeCCEEEE-EeCCCCCCeEEEEEeCCCCCceeeEEcC
Q 044808 248 KKFLFVKSKTKVTGFVYYFDVSRPE-TLWFLPPWHLGIDMFVSHRGNQFFI-RRSDGGFHSDVLTCPVDNTFETTVLIPH 325 (623)
Q Consensus 248 g~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l~~~~~~~~~~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~~~~~li~~ 325 (623)
+..+++.... ..|+.+|.++++ .|+.-.+. .+......+++.+|+ +.. ..|+.+|.++++. .|-...
T Consensus 65 ~~~v~v~~~~---g~v~a~d~~tG~~~W~~~~~~--~~~~~p~v~~~~v~v~~~~-----g~l~ald~~tG~~-~W~~~~ 133 (377)
T TIGR03300 65 GGKVYAADAD---GTVVALDAETGKRLWRVDLDE--RLSGGVGADGGLVFVGTEK-----GEVIALDAEDGKE-LWRAKL 133 (377)
T ss_pred CCEEEEECCC---CeEEEEEccCCcEeeeecCCC--CcccceEEcCCEEEEEcCC-----CEEEEEECCCCcE-eeeecc
Confidence 4455554322 468888988876 33322222 111223456788888 543 3799999877653 563222
Q ss_pred CCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCC
Q 044808 326 RERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGE 363 (623)
Q Consensus 326 ~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~ 363 (623)
... ......+.++.+++... + ..|+.++..+ |+
T Consensus 134 ~~~-~~~~p~v~~~~v~v~~~-~--g~l~a~d~~t-G~ 166 (377)
T TIGR03300 134 SSE-VLSPPLVANGLVVVRTN-D--GRLTALDAAT-GE 166 (377)
T ss_pred Cce-eecCCEEECCEEEEECC-C--CeEEEEEcCC-Cc
Confidence 211 12223345566665432 2 3588888765 55
No 418
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=75.60 E-value=34 Score=38.72 Aligned_cols=116 Identities=19% Similarity=0.220 Sum_probs=67.3
Q ss_pred EEeeeEECCCCCE-EEEEEeCceEEEEECCCCCccccccC--c--cceeEEecCCeEEEEEeCCCCCC-eEEEEECCCCC
Q 044808 151 RITAFKVSPNNKL-VAFRENCGTVCVIDSETGAPAEKPIQ--G--CLEFEWAGDEAFLYTRRNAIAEP-QVWFHKLGEEQ 224 (623)
Q Consensus 151 ~l~~~~~SPDG~~-lA~~~~~~~l~v~dl~tg~~~~~~i~--~--~~~~~WspDg~l~y~~~d~~~~~-~v~~~~lgt~~ 224 (623)
++..++|||--.. .|-+.+.+.|..||+.--+.-...+. + +..+.|.|++.++-+. +|. .|.+++.+++.
T Consensus 178 SiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATG----GRDK~vkiWd~t~~~ 253 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATG----GRDKMVKIWDMTDSR 253 (839)
T ss_pred hhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeec----CCCccEEEEeccCCC
Confidence 3455677775443 34344445899999864332111111 1 1238899976444332 244 56667776654
Q ss_pred cccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC
Q 044808 225 SKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE 272 (623)
Q Consensus 225 ~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~ 272 (623)
.......+...| .-.+.|-|+-++.+.+.+.-....|++.|+..+=
T Consensus 254 ~~~~~tInTiap--v~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPY 299 (839)
T KOG0269|consen 254 AKPKHTINTIAP--VGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPY 299 (839)
T ss_pred ccceeEEeecce--eeeeeeccCccchhhhhhccccceEEEEeecccc
Confidence 444444443211 2246789999887766555567789999988753
No 419
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=74.87 E-value=1e+02 Score=31.36 Aligned_cols=188 Identities=11% Similarity=0.096 Sum_probs=97.0
Q ss_pred EEeeeEECCCCC--EEEEEEeCceEEEEECCCCCccccccC----ccceeEEecCCeEEEEEeCCCCCCeEEEEECCCCC
Q 044808 151 RITAFKVSPNNK--LVAFRENCGTVCVIDSETGAPAEKPIQ----GCLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQ 224 (623)
Q Consensus 151 ~l~~~~~SPDG~--~lA~~~~~~~l~v~dl~tg~~~~~~i~----~~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~ 224 (623)
++....++|+-. .|.-+.+.+.|.+|+..+=+.+. .+. .+..++--|.|+|+.+..++. .+..++|-.+.
T Consensus 85 sitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~-slK~H~~~Vt~lsiHPS~KLALsVg~D~---~lr~WNLV~Gr 160 (362)
T KOG0294|consen 85 SITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLK-SLKAHKGQVTDLSIHPSGKLALSVGGDQ---VLRTWNLVRGR 160 (362)
T ss_pred ceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEee-eecccccccceeEecCCCceEEEEcCCc---eeeeehhhcCc
Confidence 466778888875 55555555689999987654432 222 233477788888888765432 34455554442
Q ss_pred cccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeEEEEeeCCEEEE-EeCCCC
Q 044808 225 SKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDMFVSHRGNQFFI-RRSDGG 303 (623)
Q Consensus 225 ~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~~~~~dg~~ly~-sn~~g~ 303 (623)
..-.+-.. + ....+.|+|.|.+.++...+ .-++|-++.+.- +..+.... .+.....-+++.|++ -+..
T Consensus 161 ~a~v~~L~--~--~at~v~w~~~Gd~F~v~~~~--~i~i~q~d~A~v--~~~i~~~~-r~l~~~~l~~~~L~vG~d~~-- 229 (362)
T KOG0294|consen 161 VAFVLNLK--N--KATLVSWSPQGDHFVVSGRN--KIDIYQLDNASV--FREIENPK-RILCATFLDGSELLVGGDNE-- 229 (362)
T ss_pred cceeeccC--C--cceeeEEcCCCCEEEEEecc--EEEEEecccHhH--hhhhhccc-cceeeeecCCceEEEecCCc--
Confidence 21121111 1 12236799999976664432 345666655431 11111111 111111123455555 3322
Q ss_pred CCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCC---EEEEEEeeCCcceEEEEECCC
Q 044808 304 FHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFAD---HIAVYELEEGLPKITTYCLPP 360 (623)
Q Consensus 304 ~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~---~Lv~~~~~~g~~~l~v~~l~~ 360 (623)
.+...|.+......-+.+|. . .+.++....+ +++++...+|. |.+++++.
T Consensus 230 ---~i~~~D~ds~~~~~~~~AH~-~-RVK~i~~~~~~~~~~lvTaSSDG~--I~vWd~~~ 282 (362)
T KOG0294|consen 230 ---WISLKDTDSDTPLTEFLAHE-N-RVKDIASYTNPEHEYLVTASSDGF--IKVWDIDM 282 (362)
T ss_pred ---eEEEeccCCCccceeeecch-h-heeeeEEEecCCceEEEEeccCce--EEEEEccc
Confidence 24444443322211134443 3 3667765433 77888888886 55666653
No 420
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=74.47 E-value=9.1 Score=35.78 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=29.2
Q ss_pred CchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 044808 530 RNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNM 572 (623)
Q Consensus 530 ~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~ 572 (623)
...+.+|.+.++... ....++.++|+|||..+++.++.+
T Consensus 91 a~~L~~f~~gl~a~~----~~~~~~tv~GHSYGS~v~G~A~~~ 129 (177)
T PF06259_consen 91 APRLARFLDGLRATH----GPDAHLTVVGHSYGSTVVGLAAQQ 129 (177)
T ss_pred HHHHHHHHHHhhhhc----CCCCCEEEEEecchhHHHHHHhhh
Confidence 345566666655333 456799999999999999999877
No 421
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=74.21 E-value=37 Score=34.40 Aligned_cols=113 Identities=13% Similarity=0.100 Sum_probs=66.4
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccc--cccC----ccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCC
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAE--KPIQ----GCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEE 223 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~--~~i~----~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~ 223 (623)
.|...+|++|+..+|.+.+...|.|+...+.+.-. .++. .+.++.|+|.+ +|.-...|.+ -|.+....+
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drn----ayVw~~~~~ 87 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN----AYVWTQPSG 87 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCC----ccccccCCC
Confidence 36678999999999999877677777776665221 1222 12359999999 8876665543 344444222
Q ss_pred C-cccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECC
Q 044808 224 Q-SKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVS 269 (623)
Q Consensus 224 ~-~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~ 269 (623)
. =+.+++.-+-+- --..+.|||.+..+++.+..+. -.|+++.-+
T Consensus 88 ~~WkptlvLlRiNr-AAt~V~WsP~enkFAVgSgar~-isVcy~E~E 132 (361)
T KOG1523|consen 88 GTWKPTLVLLRINR-AATCVKWSPKENKFAVGSGARL-ISVCYYEQE 132 (361)
T ss_pred CeeccceeEEEecc-ceeeEeecCcCceEEeccCccE-EEEEEEecc
Confidence 1 123344332221 1234679999988777554332 234444433
No 422
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=74.07 E-value=16 Score=45.61 Aligned_cols=97 Identities=13% Similarity=0.028 Sum_probs=56.7
Q ss_pred ccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcCCCC
Q 044808 471 DPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSNYCS 550 (623)
Q Consensus 471 ~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d 550 (623)
.|.|+.+||..+... .|. ... ..+..++.|+.++.+|-+.. .....+++++.+-....+..- ..
T Consensus 1068 ~~~l~~lh~~~g~~~--~~~--~l~-~~l~~~~~v~~~~~~g~~~~----------~~~~~~l~~la~~~~~~i~~~-~~ 1131 (1296)
T PRK10252 1068 GPTLFCFHPASGFAW--QFS--VLS-RYLDPQWSIYGIQSPRPDGP----------MQTATSLDEVCEAHLATLLEQ-QP 1131 (1296)
T ss_pred CCCeEEecCCCCchH--HHH--HHH-HhcCCCCcEEEEECCCCCCC----------CCCCCCHHHHHHHHHHHHHhh-CC
Confidence 356788898765431 233 222 23356789999988875321 112245555554433333321 11
Q ss_pred CCcEEEEEeChHHHHHHHHHHh---CCCeeeEEEec
Q 044808 551 EDNLCIEGGSAGGMLIGAVLNM---RPELFKVAVAD 583 (623)
Q Consensus 551 ~~ri~i~G~S~GG~l~~~~~~~---~p~~f~a~v~~ 583 (623)
.++..+.|+|+||.++..++.+ +|+.....+..
T Consensus 1132 ~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~ 1167 (1296)
T PRK10252 1132 HGPYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLL 1167 (1296)
T ss_pred CCCEEEEEechhhHHHHHHHHHHHHcCCceeEEEEe
Confidence 2579999999999999877764 56655555443
No 423
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=73.69 E-value=15 Score=36.45 Aligned_cols=62 Identities=15% Similarity=0.292 Sum_probs=36.8
Q ss_pred eEECCCCCEEEEEEeCceEEEEECCCC------C--ccccccCccceeEEecCC-eEEEEEeCCCCCCeEEEEECC
Q 044808 155 FKVSPNNKLVAFRENCGTVCVIDSETG------A--PAEKPIQGCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLG 221 (623)
Q Consensus 155 ~~~SPDG~~lA~~~~~~~l~v~dl~tg------~--~~~~~i~~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lg 221 (623)
+..|+|||.||...+. .|-|+-.... + +-.|..+.-.-++||||+ -|+|..... .|..+++-
T Consensus 3 ~~~~~~Gk~lAi~qd~-~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G----~i~vfdl~ 73 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQ-CIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTG----TIRVFDLM 73 (282)
T ss_pred eeecCCCcEEEEEecc-EEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCC----eEEEEecc
Confidence 5789999999999886 4555443321 1 111222222249999999 566665322 46666664
No 424
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=73.28 E-value=10 Score=37.07 Aligned_cols=124 Identities=18% Similarity=0.114 Sum_probs=67.8
Q ss_pred CCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHHHHHHHHHHcC
Q 044808 468 DGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSN 547 (623)
Q Consensus 468 ~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 547 (623)
+.+.-++.+.|-|-+++....|. .... --..++.+.+=|=+. . .+..-++|+.+.++-|...-
T Consensus 5 ~~~~~L~cfP~AGGsa~~fr~W~--~~lp----~~iel~avqlPGR~~---r--------~~ep~~~di~~Lad~la~el 67 (244)
T COG3208 5 GARLRLFCFPHAGGSASLFRSWS--RRLP----ADIELLAVQLPGRGD---R--------FGEPLLTDIESLADELANEL 67 (244)
T ss_pred CCCceEEEecCCCCCHHHHHHHH--hhCC----chhheeeecCCCccc---c--------cCCcccccHHHHHHHHHHHh
Confidence 34455677778774444222222 1111 125666777766322 1 23355677778888777642
Q ss_pred C-CCC-CcEEEEEeChHHHHHHHHHHh------CCCeeeEEEecCCccchhhhhhCCCCcccHHHHhhcccc
Q 044808 548 Y-CSE-DNLCIEGGSAGGMLIGAVLNM------RPELFKVAVADVPSVDVLTTILFYPRKRDLEIATSVVTL 611 (623)
Q Consensus 548 ~-~d~-~ri~i~G~S~GG~l~~~~~~~------~p~~f~a~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 611 (623)
. ..+ .-.+..|+|+||.++--++-+ .|..|-..-+.+|..+--......+ +.+|++.++++
T Consensus 68 ~~~~~d~P~alfGHSmGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i~~~~---D~~~l~~l~~l 136 (244)
T COG3208 68 LPPLLDAPFALFGHSMGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQIHHLD---DADFLADLVDL 136 (244)
T ss_pred ccccCCCCeeecccchhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCccCCC---HHHHHHHHHHh
Confidence 2 333 468999999999998766533 2444555566678444333332222 34444444444
No 425
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=73.13 E-value=1.4e+02 Score=32.10 Aligned_cols=112 Identities=12% Similarity=0.025 Sum_probs=68.1
Q ss_pred cEEEeeeEECCCCCEEEEEEeCc-eEEEEECCCCCccccccCcc----ceeEEecCC-eEEEEE-eCCCCCCeEEEEECC
Q 044808 149 NYRITAFKVSPNNKLVAFRENCG-TVCVIDSETGAPAEKPIQGC----LEFEWAGDE-AFLYTR-RNAIAEPQVWFHKLG 221 (623)
Q Consensus 149 ~~~l~~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~~~i~~~----~~~~WspDg-~l~y~~-~d~~~~~~v~~~~lg 221 (623)
...+....++|+++.++.+.+.. .+.+||+.++.+ +..+.+. ...+|+|-. .++++- +|. .|..|++.
T Consensus 110 ~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg----~vrl~DtR 184 (487)
T KOG0310|consen 110 QAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV-QAELSGHTDYVRCGDISPANDHIVVTGSYDG----KVRLWDTR 184 (487)
T ss_pred cCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE-EEEecCCcceeEeeccccCCCeEEEecCCCc----eEEEEEec
Confidence 45667789999988876665555 889999988875 4344432 348899887 677764 232 56777766
Q ss_pred CCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC
Q 044808 222 EEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE 272 (623)
Q Consensus 222 t~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~ 272 (623)
+.. ..+++-+.+.-.-++-.-|.|..|+- .+++.+-++|+.+|.
T Consensus 185 ~~~---~~v~elnhg~pVe~vl~lpsgs~ias----AgGn~vkVWDl~~G~ 228 (487)
T KOG0310|consen 185 SLT---SRVVELNHGCPVESVLALPSGSLIAS----AGGNSVKVWDLTTGG 228 (487)
T ss_pred cCC---ceeEEecCCCceeeEEEcCCCCEEEE----cCCCeEEEEEecCCc
Confidence 542 22333222111112334566665432 235788888998665
No 426
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=72.93 E-value=1.2e+02 Score=31.89 Aligned_cols=96 Identities=10% Similarity=0.110 Sum_probs=47.2
Q ss_pred eeEECCCCCEEEEEE-----------eCc-eEEEEECCC--CCcc-----ccccCccceeEEecCCeEEEEEeCCCCCCe
Q 044808 154 AFKVSPNNKLVAFRE-----------NCG-TVCVIDSET--GAPA-----EKPIQGCLEFEWAGDEAFLYTRRNAIAEPQ 214 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~-----------~~~-~l~v~dl~t--g~~~-----~~~i~~~~~~~WspDg~l~y~~~d~~~~~~ 214 (623)
.+.|.++|+..+-.. ..+ .|++++-.. |+.. .+.+....++++.++| +|++. .++
T Consensus 18 ~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~-----~~~ 91 (367)
T TIGR02604 18 AVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVAT-----PPD 91 (367)
T ss_pred eeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeC-----CCe
Confidence 457788887544321 111 576766543 3321 1122333468898888 55542 235
Q ss_pred EEEEECC--CCCc--ccEEEEeec-CC-----ceeEEEEEcCCCcEEEEEee
Q 044808 215 VWFHKLG--EEQS--KDTCLYRTR-ED-----LFDLTLEASESKKFLFVKSK 256 (623)
Q Consensus 215 v~~~~lg--t~~~--~d~lv~~~~-~~-----~~~~~~~~S~Dg~~l~i~s~ 256 (623)
|++..-. .+.. +.++++..- .. ...-++.+.|||+ |++...
T Consensus 92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~-LYv~~G 142 (367)
T TIGR02604 92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW-LYFNHG 142 (367)
T ss_pred EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC-EEEecc
Confidence 7765322 1111 223444321 11 1223577899995 566443
No 427
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=72.57 E-value=1.2e+02 Score=31.28 Aligned_cols=117 Identities=14% Similarity=0.134 Sum_probs=62.8
Q ss_pred EEEcCCCcEEEEEeec---ceeeEEEEEECCCCC---ce---eec---------CCCccceeE-EEEeeCCEEEE-EeCC
Q 044808 242 LEASESKKFLFVKSKT---KVTGFVYYFDVSRPE---TL---WFL---------PPWHLGIDM-FVSHRGNQFFI-RRSD 301 (623)
Q Consensus 242 ~~~S~Dg~~l~i~s~~---~~~s~l~~~dl~~~~---~~---~~l---------~~~~~~~~~-~~~~dg~~ly~-sn~~ 301 (623)
+.+.++|.+++-.... .....|+.++.. +. .+ ..+ .+...+.+. .++++|..||+ ....
T Consensus 90 i~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~ 168 (326)
T PF13449_consen 90 IAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESP 168 (326)
T ss_pred eEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECcc
Confidence 5566777654322111 112678888877 33 11 111 111223332 57899988888 5532
Q ss_pred ----CCCC-------eEEEEEeCCCCC--ceeeEEcCC------CCceEeEEEEe-CCEEEEEEeeCC-----cceEEEE
Q 044808 302 ----GGFH-------SDVLTCPVDNTF--ETTVLIPHR------ERVRVEEVRLF-ADHIAVYELEEG-----LPKITTY 356 (623)
Q Consensus 302 ----g~~~-------~~L~~~d~~~~~--~~~~li~~~------~d~~i~~~~~~-~~~Lv~~~~~~g-----~~~l~v~ 356 (623)
+... .+|+.+|..+.. ...+..+-+ .+..+.++... ++.|++.+|... ..+|+.+
T Consensus 169 l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v 248 (326)
T PF13449_consen 169 LKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRV 248 (326)
T ss_pred ccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEE
Confidence 2222 678889887632 234444433 24556677655 456888888732 3356666
Q ss_pred ECC
Q 044808 357 CLP 359 (623)
Q Consensus 357 ~l~ 359 (623)
++.
T Consensus 249 ~l~ 251 (326)
T PF13449_consen 249 DLS 251 (326)
T ss_pred Ecc
Confidence 654
No 428
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=72.22 E-value=51 Score=33.89 Aligned_cols=135 Identities=12% Similarity=0.004 Sum_probs=76.0
Q ss_pred eeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccCC-CcCChhH
Q 044808 442 ESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRGG-DEKGKQW 520 (623)
Q Consensus 442 ~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~-~~~G~~~ 520 (623)
|.++... ++.+..+ |++|... ..+.=++|.+||--.....++.- .+-+..|-+.||..+....--= +..-...
T Consensus 63 e~~~L~~-~~~~fla-L~~~~~~---~~~~G~vIilp~~g~~~d~p~~i-~~LR~~L~~~GW~Tlsit~P~~~~~~~p~~ 136 (310)
T PF12048_consen 63 EVQWLQA-GEERFLA-LWRPANS---AKPQGAVIILPDWGEHPDWPGLI-APLRRELPDHGWATLSITLPDPAPPASPNR 136 (310)
T ss_pred hcEEeec-CCEEEEE-EEecccC---CCCceEEEEecCCCCCCCcHhHH-HHHHHHhhhcCceEEEecCCCcccccCCcc
Confidence 4455554 6667776 4666543 33455788889853333333322 1456788999999998776650 0000000
Q ss_pred -------HHcccc---------------------cCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 044808 521 -------HENGKL---------------------LNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNM 572 (623)
Q Consensus 521 -------~~~~~~---------------------~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~ 572 (623)
..++.. ......+.=+.+++.++.++|. .+|++.|++-|.++++..+..
T Consensus 137 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ari~Aa~~~~~~~~~---~~ivlIg~G~gA~~~~~~la~ 213 (310)
T PF12048_consen 137 ATEAEEVPSAGDQQLSQPSDEPSPASAQEAEAREAYEERLFARIEAAIAFAQQQGG---KNIVLIGHGTGAGWAARYLAE 213 (310)
T ss_pred CCCCCCCCCCCCCCcCCCCCCCccccccHhHHhHHHHHHHHHHHHHHHHHHHhcCC---ceEEEEEeChhHHHHHHHHhc
Confidence 000000 0111233344456666666652 459999999999999999988
Q ss_pred CCCe-eeEEEecCC
Q 044808 573 RPEL-FKVAVADVP 585 (623)
Q Consensus 573 ~p~~-f~a~v~~~~ 585 (623)
.+.- ..+.|...+
T Consensus 214 ~~~~~~daLV~I~a 227 (310)
T PF12048_consen 214 KPPPMPDALVLINA 227 (310)
T ss_pred CCCcccCeEEEEeC
Confidence 6542 345555443
No 429
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=72.22 E-value=5.9 Score=38.43 Aligned_cols=21 Identities=24% Similarity=0.477 Sum_probs=18.5
Q ss_pred CcEEEEEeChHHHHHHHHHHh
Q 044808 552 DNLCIEGGSAGGMLIGAVLNM 572 (623)
Q Consensus 552 ~ri~i~G~S~GG~l~~~~~~~ 572 (623)
.+|...|+|.||+++-.|+..
T Consensus 78 ~~IsfIgHSLGGli~r~al~~ 98 (217)
T PF05057_consen 78 RKISFIGHSLGGLIARYALGL 98 (217)
T ss_pred ccceEEEecccHHHHHHHHHH
Confidence 689999999999999887764
No 430
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.92 E-value=10 Score=44.34 Aligned_cols=139 Identities=17% Similarity=0.126 Sum_probs=74.0
Q ss_pred CCceEEeechhhcccCCCCcE-EEee-eEECCCCCE---EEEEEeCceEEEEECCCCCcccc--ccCc---cceeEEecC
Q 044808 130 PPEEVIIDEEVIKYKNSLENY-RITA-FKVSPNNKL---VAFRENCGTVCVIDSETGAPAEK--PIQG---CLEFEWAGD 199 (623)
Q Consensus 130 ~~~~vllD~n~~a~~~~~~~~-~l~~-~~~SPDG~~---lA~~~~~~~l~v~dl~tg~~~~~--~i~~---~~~~~WspD 199 (623)
.+|-.|.|.|.+......+.. ..+. ..+|.+.+. ||-+.+.+..-|||+...+.+-. ...+ ++.++|-||
T Consensus 138 ~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~ 217 (1049)
T KOG0307|consen 138 DGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD 217 (1049)
T ss_pred CCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC
Confidence 456788999987654311111 0011 133443332 33333333788999988765421 1122 346999999
Q ss_pred C-eEEEEEeCCCCCCeEEEEECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC
Q 044808 200 E-AFLYTRRNAIAEPQVWFHKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE 272 (623)
Q Consensus 200 g-~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~ 272 (623)
+ +-+.+..++...|-|-.+++.-.. ....+++ .+..=.+.++|++.+..+++++ ...+.++..+..+++
T Consensus 218 ~aTql~~As~dd~~PviqlWDlR~as-sP~k~~~-~H~~GilslsWc~~D~~lllSs--gkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 218 HATQLLVASGDDSAPVIQLWDLRFAS-SPLKILE-GHQRGILSLSWCPQDPRLLLSS--GKDNRIICWNPNTGE 287 (1049)
T ss_pred CceeeeeecCCCCCceeEeecccccC-Cchhhhc-ccccceeeeccCCCCchhhhcc--cCCCCeeEecCCCce
Confidence 9 544444444444544444443221 1233443 2333356778888776666643 334677777777765
No 431
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=71.77 E-value=17 Score=42.39 Aligned_cols=53 Identities=17% Similarity=0.238 Sum_probs=39.3
Q ss_pred eEECCCCCEEEEEEeCc---------eEEEEECCCCC--ccccccCccce-eEEecCC-eEEEEEe
Q 044808 155 FKVSPNNKLVAFRENCG---------TVCVIDSETGA--PAEKPIQGCLE-FEWAGDE-AFLYTRR 207 (623)
Q Consensus 155 ~~~SPDG~~lA~~~~~~---------~l~v~dl~tg~--~~~~~i~~~~~-~~WspDg-~l~y~~~ 207 (623)
..+|||.++++++.+.. ..+++++.++. ..++......+ +.|+|.+ .++|+..
T Consensus 102 ~~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp~~~~l~yv~~ 167 (755)
T KOG2100|consen 102 DLISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGEKLHPPEYEGSKIQYASWSPLGNDLAYVLH 167 (755)
T ss_pred cccChhhhhheeccCcccccceeeEEEEEEEEcCCCCcccCcccCCCeeEEEEEcCCCCEEEEEEe
Confidence 48999999999997743 78888888888 22222223334 9999999 8888875
No 432
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.61 E-value=1.7e+02 Score=32.58 Aligned_cols=138 Identities=10% Similarity=0.142 Sum_probs=78.8
Q ss_pred eEECCCCCEEEEEEeCceEEEEECCCCCccccccC----ccceeEEecCCeEEEEEeCCCCCC-eEEEEECCCCCcccEE
Q 044808 155 FKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQ----GCLEFEWAGDEAFLYTRRNAIAEP-QVWFHKLGEEQSKDTC 229 (623)
Q Consensus 155 ~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~----~~~~~~WspDg~l~y~~~d~~~~~-~v~~~~lgt~~~~d~l 229 (623)
..+=+--+++..++|..+|+|++..|++.+.. ++ -+..++--|--=++.++.|+ .. ++|-++-+ -+ -..
T Consensus 61 ~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~-FeAH~DyIR~iavHPt~P~vLtsSDD--m~iKlW~we~~--wa-~~q 134 (794)
T KOG0276|consen 61 AKFIARKNWIVTGSDDMQIRVFNYNTGEKVKT-FEAHSDYIRSIAVHPTLPYVLTSSDD--MTIKLWDWENE--WA-CEQ 134 (794)
T ss_pred heeeeccceEEEecCCceEEEEecccceeeEE-eeccccceeeeeecCCCCeEEecCCc--cEEEEeeccCc--ee-eee
Confidence 34555556778888877999999999987642 22 12245555655344455443 22 45544432 21 245
Q ss_pred EEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeE-EEEeeCCEEEE-EeCC
Q 044808 230 LYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDM-FVSHRGNQFFI-RRSD 301 (623)
Q Consensus 230 v~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~-~~~~dg~~ly~-sn~~ 301 (623)
+|+ .+..|.+.+.+.|...--|.+.+-..+-.||-+--..+. ..+..++.|+.+ ..-+.|+.=|+ |..+
T Consensus 135 tfe-GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n--fTl~gHekGVN~Vdyy~~gdkpylIsgaD 205 (794)
T KOG0276|consen 135 TFE-GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN--FTLEGHEKGVNCVDYYTGGDKPYLISGAD 205 (794)
T ss_pred EEc-CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc--eeeeccccCcceEEeccCCCcceEEecCC
Confidence 676 456688888888755444443332333455544333322 234566677765 34566777777 7765
No 433
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=71.26 E-value=62 Score=32.52 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=55.5
Q ss_pred eEEEEECCCCCcccc-ccCc-cceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCcccEEEEeecCCceeEEEEEcCCC
Q 044808 172 TVCVIDSETGAPAEK-PIQG-CLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQSKDTCLYRTREDLFDLTLEASESK 248 (623)
Q Consensus 172 ~l~v~dl~tg~~~~~-~i~~-~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg 248 (623)
+|.|||..|-+...+ ..++ +.+-+|||=. +...+.... ..++|.+-++.++.-... ... +-+-.+.+.|||..
T Consensus 125 tlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gt-r~~~VrLCDi~SGs~sH~--LsG-Hr~~vlaV~Wsp~~ 200 (397)
T KOG4283|consen 125 TLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGT-RDVQVRLCDIASGSFSHT--LSG-HRDGVLAVEWSPSS 200 (397)
T ss_pred eEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEec-CCCcEEEEeccCCcceee--ecc-ccCceEEEEeccCc
Confidence 899999998765432 3343 3457898876 433333221 123788899988753222 222 11235678999999
Q ss_pred cEEEEEeecceeeEEEEEE
Q 044808 249 KFLFVKSKTKVTGFVYYFD 267 (623)
Q Consensus 249 ~~l~i~s~~~~~s~l~~~d 267 (623)
+|++.+.+..+.-.+|-+.
T Consensus 201 e~vLatgsaDg~irlWDiR 219 (397)
T KOG4283|consen 201 EWVLATGSADGAIRLWDIR 219 (397)
T ss_pred eeEEEecCCCceEEEEEee
Confidence 9998766554444444433
No 434
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=71.07 E-value=73 Score=35.48 Aligned_cols=109 Identities=14% Similarity=0.192 Sum_probs=64.6
Q ss_pred eeEECCCCCEEEEEEeCceEEEEECCCCCcccc---ccCccceeEEecCC-eEEEEEeCCCCCCeEEEEECCCCCcccEE
Q 044808 154 AFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK---PIQGCLEFEWAGDE-AFLYTRRNAIAEPQVWFHKLGEEQSKDTC 229 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~---~i~~~~~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt~~~~d~l 229 (623)
+++-.|.|..|+-+.-.+.|++||..+++.+-. ..+++..+.-++|| +++-.+.|. .|.+++||..- ...
T Consensus 176 SLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDg----tIrlWdLgqQr--Cl~ 249 (735)
T KOG0308|consen 176 SLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDG----TIRLWDLGQQR--CLA 249 (735)
T ss_pred eeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCc----eEEeeeccccc--eee
Confidence 445566664444443333899999999876432 23455567778999 776666554 47888998642 222
Q ss_pred EEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC
Q 044808 230 LYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE 272 (623)
Q Consensus 230 v~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~ 272 (623)
.|.-..+. ...+..+|+-.+++... ....||.-|+.+..
T Consensus 250 T~~vH~e~-VWaL~~~~sf~~vYsG~---rd~~i~~Tdl~n~~ 288 (735)
T KOG0308|consen 250 TYIVHKEG-VWALQSSPSFTHVYSGG---RDGNIYRTDLRNPA 288 (735)
T ss_pred eEEeccCc-eEEEeeCCCcceEEecC---CCCcEEecccCCch
Confidence 23222222 33445567777765422 23468888888754
No 435
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=69.93 E-value=22 Score=37.84 Aligned_cols=60 Identities=20% Similarity=0.268 Sum_probs=31.0
Q ss_pred eeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeec----CC---------Ccc------cee-EEEEeeCCEEEE
Q 044808 238 FDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFL----PP---------WHL------GID-MFVSHRGNQFFI 297 (623)
Q Consensus 238 ~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l----~~---------~~~------~~~-~~~~~dg~~ly~ 297 (623)
....+.+|.|.|+|+++..- ..++...|++++..++++ +. ... +.+ ..++-||++||+
T Consensus 313 LitDI~iSlDDrfLYvs~W~--~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 313 LITDILISLDDRFLYVSNWL--HGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp ----EEE-TTS-EEEEEETT--TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred ceEeEEEccCCCEEEEEccc--CCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence 45678899999999986553 357788888876523221 00 000 111 357889999999
Q ss_pred Ee
Q 044808 298 RR 299 (623)
Q Consensus 298 sn 299 (623)
||
T Consensus 391 Tn 392 (461)
T PF05694_consen 391 TN 392 (461)
T ss_dssp E-
T ss_pred Ee
Confidence 44
No 436
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=69.74 E-value=11 Score=35.90 Aligned_cols=51 Identities=22% Similarity=0.094 Sum_probs=35.3
Q ss_pred HHHHHHHHc---CCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCccc
Q 044808 538 ACADYLIKS---NYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPSVD 588 (623)
Q Consensus 538 ~~~~~l~~~---~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~~d 588 (623)
+.+.+|+++ .-++++||+|.|-|.||-+++.+....|-.....++..|+.-
T Consensus 76 ~~i~~Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G~~~~s~~~p 129 (206)
T KOG2112|consen 76 DNIANLIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGGIFALSGFLP 129 (206)
T ss_pred HHHHHHHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccceeeccccccc
Confidence 344455543 347899999999999999999998877544344444445443
No 437
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=69.63 E-value=26 Score=36.22 Aligned_cols=124 Identities=13% Similarity=0.184 Sum_probs=67.6
Q ss_pred eechhhcccCCCCcEEEeeeEECCCCCEEEEEEeCc-eEEEEECCCCCcccccc---C--ccceeEEecCCeEEEEEeCC
Q 044808 136 IDEEVIKYKNSLENYRITAFKVSPNNKLVAFRENCG-TVCVIDSETGAPAEKPI---Q--GCLEFEWAGDEAFLYTRRNA 209 (623)
Q Consensus 136 lD~n~~a~~~~~~~~~l~~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~~~i---~--~~~~~~WspDg~l~y~~~d~ 209 (623)
+|.+-+.. | ..++..++|||..+-+.++.+.. .|+|||+.++...+-.. . ++.-+.|+.+-.|+-+-.|
T Consensus 248 vd~~Pf~g-H---~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~D- 322 (440)
T KOG0302|consen 248 VDQRPFTG-H---TKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGD- 322 (440)
T ss_pred ecCccccc-c---ccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCC-
Confidence 45555542 2 45788899999999887776655 99999999985332111 1 1223899766553332222
Q ss_pred CCCCeEEEEECCCCCc-ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECC
Q 044808 210 IAEPQVWFHKLGEEQS-KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVS 269 (623)
Q Consensus 210 ~~~~~v~~~~lgt~~~-~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~ 269 (623)
. .. +-+++|..-+. +.+..|.-... -..++.|+|...-++..+.. .+.|.+.|++
T Consensus 323 d-Gt-~~iwDLR~~~~~~pVA~fk~Hk~-pItsieW~p~e~s~iaasg~--D~QitiWDls 378 (440)
T KOG0302|consen 323 D-GT-LSIWDLRQFKSGQPVATFKYHKA-PITSIEWHPHEDSVIAASGE--DNQITIWDLS 378 (440)
T ss_pred C-ce-EEEEEhhhccCCCcceeEEeccC-CeeEEEeccccCceEEeccC--CCcEEEEEee
Confidence 2 22 22233322111 22334432211 13467899877776654443 3455555554
No 438
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.58 E-value=1.2e+02 Score=30.67 Aligned_cols=67 Identities=10% Similarity=0.257 Sum_probs=37.7
Q ss_pred eeeEECCCCCEEEEEEeCceEEEEECCCCCcc-c-c----cc----C-cc--ceeEEecCC-eEEEEEeCCCCCC-eEEE
Q 044808 153 TAFKVSPNNKLVAFRENCGTVCVIDSETGAPA-E-K----PI----Q-GC--LEFEWAGDE-AFLYTRRNAIAEP-QVWF 217 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~-~-~----~i----~-~~--~~~~WspDg-~l~y~~~d~~~~~-~v~~ 217 (623)
..+.+.-+|++++--....+|++.-++.+..+ . . ++ . |+ .|++|.|.+ +|++.+. .+| .||.
T Consensus 132 E~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE---r~P~~I~~ 208 (316)
T COG3204 132 ETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE---RNPIGIFE 208 (316)
T ss_pred hHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc---cCCcEEEE
Confidence 34566666666544443336666655544221 1 0 11 1 33 259999998 7888764 246 8888
Q ss_pred EECCC
Q 044808 218 HKLGE 222 (623)
Q Consensus 218 ~~lgt 222 (623)
++.+.
T Consensus 209 ~~~~~ 213 (316)
T COG3204 209 VTQSP 213 (316)
T ss_pred EecCC
Confidence 87443
No 439
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=68.49 E-value=11 Score=41.81 Aligned_cols=58 Identities=17% Similarity=0.316 Sum_probs=35.2
Q ss_pred cEEEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccc---cC---c-cceeEEecCCeEEEEE
Q 044808 149 NYRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKP---IQ---G-CLEFEWAGDEAFLYTR 206 (623)
Q Consensus 149 ~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~---i~---~-~~~~~WspDg~l~y~~ 206 (623)
...+..+.|||||++|+-+..+.++.++....+...... +. . ++.-.|+||+.-|.+.
T Consensus 572 sLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTa 636 (764)
T KOG1063|consen 572 SLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATA 636 (764)
T ss_pred ceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEe
Confidence 456788999999999887765556666665433221111 11 1 2346789999434444
No 440
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=68.41 E-value=1.2e+02 Score=31.30 Aligned_cols=120 Identities=12% Similarity=0.102 Sum_probs=69.9
Q ss_pred EEeeeEECCCCCEEEEEEeC------ceEEEEECCCCCccc-----ccc-------Ccc------ceeEEecCCe-EEEE
Q 044808 151 RITAFKVSPNNKLVAFRENC------GTVCVIDSETGAPAE-----KPI-------QGC------LEFEWAGDEA-FLYT 205 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~------~~l~v~dl~tg~~~~-----~~i-------~~~------~~~~WspDg~-l~y~ 205 (623)
...++++++||.++.-.... ..|+.++.. |+... ..+ ... .+++.+|||+ |+..
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~ 164 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA 164 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence 45567788888876666555 389999987 65532 111 111 1499999995 5555
Q ss_pred EeCC-----C------CCC-eEEEEECCCCC-cccEEEEeecC-----Ccee-EEEEEcCCCcEEEEEeec----ceeeE
Q 044808 206 RRNA-----I------AEP-QVWFHKLGEEQ-SKDTCLYRTRE-----DLFD-LTLEASESKKFLFVKSKT----KVTGF 262 (623)
Q Consensus 206 ~~d~-----~------~~~-~v~~~~lgt~~-~~d~lv~~~~~-----~~~~-~~~~~S~Dg~~l~i~s~~----~~~s~ 262 (623)
.... . ... +++..+..++. .....+|.-+. ..+. ..+..-+|++.|++.... .....
T Consensus 165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~r 244 (326)
T PF13449_consen 165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKR 244 (326)
T ss_pred ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEE
Confidence 4321 1 112 56677766521 22344555321 1222 356677899988776542 23567
Q ss_pred EEEEECCCC
Q 044808 263 VYYFDVSRP 271 (623)
Q Consensus 263 l~~~dl~~~ 271 (623)
||.+++...
T Consensus 245 i~~v~l~~a 253 (326)
T PF13449_consen 245 IYRVDLSDA 253 (326)
T ss_pred EEEEEcccc
Confidence 888887654
No 441
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=68.28 E-value=15 Score=38.24 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=29.8
Q ss_pred CCcEEEEEeChHHHHHHHHHHhCC--CeeeEEEecCCc
Q 044808 551 EDNLCIEGGSAGGMLIGAVLNMRP--ELFKVAVADVPS 586 (623)
Q Consensus 551 ~~ri~i~G~S~GG~l~~~~~~~~p--~~f~a~v~~~~~ 586 (623)
..++.+.|+|.||.++-..+...+ .+.+.++...+.
T Consensus 126 a~~v~LigHS~GG~~~ry~~~~~~~~~~V~~~~tl~tp 163 (336)
T COG1075 126 AKKVNLIGHSMGGLDSRYYLGVLGGANRVASVVTLGTP 163 (336)
T ss_pred CCceEEEeecccchhhHHHHhhcCccceEEEEEEeccC
Confidence 389999999999999998888877 677777776543
No 442
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=67.96 E-value=25 Score=35.35 Aligned_cols=135 Identities=12% Similarity=0.131 Sum_probs=81.4
Q ss_pred eeeEEECCCCCeEEEEEEEeCCCccCCCCccEEEEEcCC-CC--CCCCCCCCchhhhHHHHHCCcEEEEEeccCCCcCCh
Q 044808 442 ESKRAYASDGEEIPISIVYRKNRVKLDGSDPLLLFGYGS-YG--LGPSSYSNSIASRLTILDRGIIFAIAHVRGGDEKGK 518 (623)
Q Consensus 442 ~~~~~~s~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg-~~--~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG~~~~G~ 518 (623)
++..+.+.-|. |++.| + - +++++.|+|+..|.= -. ++...-|+ .+..+.++++ ++|.-++.-|-- .|
T Consensus 23 ~e~~V~T~~G~-v~V~V-~-G---d~~~~kpaiiTyhDlglN~~scFq~ff~-~p~m~ei~~~-fcv~HV~~PGqe-~g- 92 (326)
T KOG2931|consen 23 QEHDVETAHGV-VHVTV-Y-G---DPKGNKPAIITYHDLGLNHKSCFQGFFN-FPDMAEILEH-FCVYHVDAPGQE-DG- 92 (326)
T ss_pred eeeeecccccc-EEEEE-e-c---CCCCCCceEEEecccccchHhHhHHhhc-CHhHHHHHhh-eEEEecCCCccc-cC-
Confidence 34444444463 66653 3 1 234467999988872 11 11222233 2667888888 999888888742 22
Q ss_pred hHHHcccccCC--CchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEec------CCccchh
Q 044808 519 QWHENGKLLNK--RNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVAD------VPSVDVL 590 (623)
Q Consensus 519 ~~~~~~~~~~~--~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~------~~~~d~~ 590 (623)
|-.-..+ .-+.+|+.+-+-.+.++= .=+-|..+|--+|.|.-+.-+..||++.-+.|.. .+.+||.
T Consensus 93 ----Ap~~p~~y~yPsmd~LAd~l~~VL~~f--~lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvLIn~~~~a~gwiew~ 166 (326)
T KOG2931|consen 93 ----APSFPEGYPYPSMDDLADMLPEVLDHF--GLKSVIGMGVGAGAYILARFALNHPERVLGLVLINCDPCAKGWIEWA 166 (326)
T ss_pred ----CccCCCCCCCCCHHHHHHHHHHHHHhc--CcceEEEecccccHHHHHHHHhcChhheeEEEEEecCCCCchHHHHH
Confidence 1111111 345666666555555431 2367888999999998887777899987776655 4667776
Q ss_pred hh
Q 044808 591 TT 592 (623)
Q Consensus 591 ~~ 592 (623)
..
T Consensus 167 ~~ 168 (326)
T KOG2931|consen 167 YN 168 (326)
T ss_pred HH
Confidence 44
No 443
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=67.43 E-value=2.3e+02 Score=32.33 Aligned_cols=116 Identities=12% Similarity=-0.032 Sum_probs=61.0
Q ss_pred eeEEEEEcCCCcEEEEEeecce-----eeEEEEEECCCCCceeecCCCc---cce-eEEEEeeCCEEEE-EeCCCCCCeE
Q 044808 238 FDLTLEASESKKFLFVKSKTKV-----TGFVYYFDVSRPETLWFLPPWH---LGI-DMFVSHRGNQFFI-RRSDGGFHSD 307 (623)
Q Consensus 238 ~~~~~~~S~Dg~~l~i~s~~~~-----~s~l~~~dl~~~~~~~~l~~~~---~~~-~~~~~~dg~~ly~-sn~~g~~~~~ 307 (623)
....+.+.+||+.+++...... ...+++.+.+.+. ........ .+. .....-+++.+++ +... .....
T Consensus 217 ~~~~~~~~~~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~ 294 (620)
T COG1506 217 SISKLAFDADGKSIALLGTESDRGLAEGDFILLLDGELGE-VDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDG-GGSSP 294 (620)
T ss_pred eeeeeeeCCCCCeeEEeccCCccCccccceEEEEeccccc-cceeeccCCcccCcHHhccccCCCcEEEEEecC-CCceE
Confidence 3455678999998777664321 2456666633333 21111110 000 0111234566676 6653 33566
Q ss_pred EEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCC-cceEEEEEC
Q 044808 308 VLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEG-LPKITTYCL 358 (623)
Q Consensus 308 L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g-~~~l~v~~l 358 (623)
++.++..+.. ..+.. .+...+.+++..++.+++...... .+++++++.
T Consensus 295 l~~~~~~~~~--~~~~~-~~~~~v~~f~~~~~~~~~~~s~~~~p~~i~~~~~ 343 (620)
T COG1506 295 LFRVDDLGGG--VEGLS-GDDGGVPGFDVDGRKLALAYSSPTEPPEIYLYDR 343 (620)
T ss_pred EEEEeccCCc--eeeec-CCCceEEEEeeCCCEEEEEecCCCCccceEEEcC
Confidence 7776654432 12222 222356677777778887777655 567887764
No 444
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=65.47 E-value=45 Score=27.26 Aligned_cols=65 Identities=14% Similarity=0.098 Sum_probs=37.2
Q ss_pred eEECCCCCEEEEEEeCc------------------eEEEEECCCCCc--cccccCccceeEEecCCeEEEEEeCCCCCCe
Q 044808 155 FKVSPNNKLVAFRENCG------------------TVCVIDSETGAP--AEKPIQGCLEFEWAGDEAFLYTRRNAIAEPQ 214 (623)
Q Consensus 155 ~~~SPDG~~lA~~~~~~------------------~l~v~dl~tg~~--~~~~i~~~~~~~WspDg~l~y~~~d~~~~~~ 214 (623)
+.+++|+..|-|+..-. .|..+|+.|++. +.+.+.-..+++-++|+.+++... ..+.+
T Consensus 3 ldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~E--t~~~R 80 (89)
T PF03088_consen 3 LDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAE--TGRYR 80 (89)
T ss_dssp EEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEE--GGGTE
T ss_pred eeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEe--ccCce
Confidence 46666655566664311 799999999975 223333345799999995444442 22236
Q ss_pred EEEEECC
Q 044808 215 VWFHKLG 221 (623)
Q Consensus 215 v~~~~lg 221 (623)
|.++-+.
T Consensus 81 i~rywl~ 87 (89)
T PF03088_consen 81 ILRYWLK 87 (89)
T ss_dssp EEEEESS
T ss_pred EEEEEEe
Confidence 7777664
No 445
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=65.36 E-value=1.6e+02 Score=29.83 Aligned_cols=105 Identities=15% Similarity=0.168 Sum_probs=64.4
Q ss_pred EEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecC-CCccceeEEEEeeCCEEEEEeCCCCCCeEEEEEeCCCCCce
Q 044808 241 TLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLP-PWHLGIDMFVSHRGNQFFIRRSDGGFHSDVLTCPVDNTFET 319 (623)
Q Consensus 241 ~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~-~~~~~~~~~~~~dg~~ly~sn~~g~~~~~L~~~d~~~~~~~ 319 (623)
.+.++ ++|+++.- ..+-|.++|.+++..++++- -..++..|-|.-.|+..|+++.+ ..+..+|+.++...
T Consensus 91 Dv~vs--e~yvyvad---~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadld----dgfLivdvsdpssP 161 (370)
T COG5276 91 DVRVS--EEYVYVAD---WSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLD----DGFLIVDVSDPSSP 161 (370)
T ss_pred eeEec--ccEEEEEc---CCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeecc----CcEEEEECCCCCCc
Confidence 34444 44555533 34678899999887343332 12235566688889999986644 24777888877543
Q ss_pred ee---EEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECC
Q 044808 320 TV---LIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLP 359 (623)
Q Consensus 320 ~~---li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~ 359 (623)
.. .-..+.+ -..+.+.+++-++..+.+| |.+++..
T Consensus 162 ~lagrya~~~~d--~~~v~ISGn~AYvA~~d~G---L~ivDVS 199 (370)
T COG5276 162 QLAGRYALPGGD--THDVAISGNYAYVAWRDGG---LTIVDVS 199 (370)
T ss_pred eeeeeeccCCCC--ceeEEEecCeEEEEEeCCC---eEEEEcc
Confidence 22 1111222 2467788999999999888 4455555
No 446
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=65.14 E-value=46 Score=33.56 Aligned_cols=96 Identities=14% Similarity=0.126 Sum_probs=52.9
Q ss_pred eEEEEEECCCCCceeecCCCccceeE---------EEEeeCCEEEEEeCCCCCCeEEEEEeCCCCCceeeEEcCCCCceE
Q 044808 261 GFVYYFDVSRPETLWFLPPWHLGIDM---------FVSHRGNQFFIRRSDGGFHSDVLTCPVDNTFETTVLIPHRERVRV 331 (623)
Q Consensus 261 s~l~~~dl~~~~~~~~l~~~~~~~~~---------~~~~dg~~ly~sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i 331 (623)
|.|+.+|.++++ .++|+++.-.... -.+|..+.|+++..||..|..||.+|..++.. ++++... .+
T Consensus 78 SHVH~yd~e~~~-VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DGh~nLGvy~ldr~~g~~-~~L~~~p---s~ 152 (339)
T PF09910_consen 78 SHVHEYDTENDS-VRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADGHANLGVYSLDRRTGKA-EKLSSNP---SL 152 (339)
T ss_pred ceEEEEEcCCCe-EEEEEecccCCccccccchhheeeCCCcCEEEEEecCCcceeeeEEEcccCCce-eeccCCC---Cc
Confidence 455566655554 4444433211111 13577899999666668899999999887754 3443321 12
Q ss_pred eEEEEeCCEEEEEE--eeCCcceEEEEECCCCCC
Q 044808 332 EEVRLFADHIAVYE--LEEGLPKITTYCLPPVGE 363 (623)
Q Consensus 332 ~~~~~~~~~Lv~~~--~~~g~~~l~v~~l~~~g~ 363 (623)
.+.. ..|..++.. -..|.+.|..+|+.+ |+
T Consensus 153 KG~~-~~D~a~F~i~~~~~g~~~i~~~Dli~-~~ 184 (339)
T PF09910_consen 153 KGTL-VHDYACFGINNFHKGVSGIHCLDLIS-GK 184 (339)
T ss_pred CceE-eeeeEEEeccccccCCceEEEEEccC-Ce
Confidence 2222 223333322 224677888888875 44
No 447
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=65.05 E-value=1.9e+02 Score=30.64 Aligned_cols=193 Identities=11% Similarity=0.126 Sum_probs=99.5
Q ss_pred eEECCCCCEEEEEEeC-ceEEEEECCCCCccc--------c-ccCc----cceeEEecCC-eEEEEEeCCCCCCeEEEEE
Q 044808 155 FKVSPNNKLVAFRENC-GTVCVIDSETGAPAE--------K-PIQG----CLEFEWAGDE-AFLYTRRNAIAEPQVWFHK 219 (623)
Q Consensus 155 ~~~SPDG~~lA~~~~~-~~l~v~dl~tg~~~~--------~-~i~~----~~~~~WspDg-~l~y~~~d~~~~~~v~~~~ 219 (623)
.+.=|....|.-+... +.++|+|...-.-.+ + ++.+ ..++.|++.. ..+.+..+.. .+-.++
T Consensus 130 aRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~---~i~lwd 206 (422)
T KOG0264|consen 130 ARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH---TICLWD 206 (422)
T ss_pred hhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC---cEEEEe
Confidence 3444444444433333 389999987543222 1 1211 2348999887 3333332221 456666
Q ss_pred CCCCCcc-----cEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-ceeecC-CCccceeE-EEEee
Q 044808 220 LGEEQSK-----DTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-TLWFLP-PWHLGIDM-FVSHR 291 (623)
Q Consensus 220 lgt~~~~-----d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l~-~~~~~~~~-~~~~d 291 (623)
+.....+ .+.+|.. +....-.++|.+-.+.||.... ..+.+.+.|+.+++ ++.... .....+.+ .|.|.
T Consensus 207 i~~~~~~~~~~~p~~~~~~-h~~~VeDV~~h~~h~~lF~sv~--dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~ 283 (422)
T KOG0264|consen 207 INAESKEDKVVDPKTIFSG-HEDVVEDVAWHPLHEDLFGSVG--DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPF 283 (422)
T ss_pred ccccccCCccccceEEeec-CCcceehhhccccchhhheeec--CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCC
Confidence 6543321 2334432 2222224567776666665443 34567777877532 233222 23333433 57788
Q ss_pred CCEEEEE-eCCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEe--CCEEEEEEeeCCcceEEEEECCC
Q 044808 292 GNQFFIR-RSDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLF--ADHIAVYELEEGLPKITTYCLPP 360 (623)
Q Consensus 292 g~~ly~s-n~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~--~~~Lv~~~~~~g~~~l~v~~l~~ 360 (623)
++.++.| ..+ ..|...|+.+....--.++...+. +-.+.|. .+.++.+.-.++ ++.++|+..
T Consensus 284 ~~~ilAT~S~D----~tV~LwDlRnL~~~lh~~e~H~de-v~~V~WSPh~etvLASSg~D~--rl~vWDls~ 348 (422)
T KOG0264|consen 284 NEFILATGSAD----KTVALWDLRNLNKPLHTFEGHEDE-VFQVEWSPHNETVLASSGTDR--RLNVWDLSR 348 (422)
T ss_pred CCceEEeccCC----CcEEEeechhcccCceeccCCCcc-eEEEEeCCCCCceeEecccCC--cEEEEeccc
Confidence 7766663 333 467888887654311144444443 4456554 456776666665 477788864
No 448
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=64.92 E-value=14 Score=35.48 Aligned_cols=55 Identities=22% Similarity=0.166 Sum_probs=37.5
Q ss_pred CchHhH-HHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH--h-------CCCeeeEEEecCCccch
Q 044808 530 RNTFTD-FIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLN--M-------RPELFKVAVADVPSVDV 589 (623)
Q Consensus 530 ~~~~~D-~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~--~-------~p~~f~a~v~~~~~~d~ 589 (623)
...++- +....+|+.++|--| ||.|.|.|..|++.+++ + +|. |+-+|...|+.=.
T Consensus 85 ~~~~eesl~yl~~~i~enGPFD----GllGFSQGA~laa~l~~~~~~~~~~~~~P~-~kF~v~~SGf~~~ 149 (230)
T KOG2551|consen 85 YFGFEESLEYLEDYIKENGPFD----GLLGFSQGAALAALLAGLGQKGLPYVKQPP-FKFAVFISGFKFP 149 (230)
T ss_pred ccChHHHHHHHHHHHHHhCCCc----cccccchhHHHHHHhhcccccCCcccCCCC-eEEEEEEecCCCC
Confidence 334455 344455788899888 99999999999998887 2 232 4555655555433
No 449
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=64.90 E-value=52 Score=35.93 Aligned_cols=98 Identities=14% Similarity=0.193 Sum_probs=56.1
Q ss_pred cEEEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCc----cceeEEec--CC--eEEEEEeCCCCCC-eEEEEE
Q 044808 149 NYRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQG----CLEFEWAG--DE--AFLYTRRNAIAEP-QVWFHK 219 (623)
Q Consensus 149 ~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~----~~~~~Wsp--Dg--~l~y~~~d~~~~~-~v~~~~ 219 (623)
.-......+||||+.|+.+.. +|.++|+++++.+. .+++ ++.+.+.- || .-++...+...+- .+|..+
T Consensus 144 ~~~~~sl~is~D~~~l~~as~--~ik~~~~~~kevv~-~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 144 KPLVSSLCISPDGKILLTASR--QIKVLDIETKEVVI-TFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred CCccceEEEcCCCCEEEeccc--eEEEEEccCceEEE-EecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence 345677899999999887764 79999999999876 4443 22355543 34 2233333333344 666665
Q ss_pred CCCCCcccEEEEeecCCceeEEEEEcCCCc
Q 044808 220 LGEEQSKDTCLYRTREDLFDLTLEASESKK 249 (623)
Q Consensus 220 lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~ 249 (623)
-.....+-...+..++.....+-....|+.
T Consensus 221 ~~~kkks~~~sl~~~dipv~~ds~~~ed~~ 250 (541)
T KOG4547|consen 221 KEDKKKSLSCSLTVPDIPVTSDSGLLEDGT 250 (541)
T ss_pred cccccchhheeeccCCCCeEeccccccccc
Confidence 433222233445555554444433445555
No 450
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=64.47 E-value=1.6e+02 Score=33.46 Aligned_cols=54 Identities=15% Similarity=0.194 Sum_probs=38.6
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCcc--ceeEEecCC-eEEE
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQGC--LEFEWAGDE-AFLY 204 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~~--~~~~WspDg-~l~y 204 (623)
.+.++.|.-||.+|+.+...+.+.|=.+++.++....+.+. ..+.||+|. .++|
T Consensus 117 vV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf 173 (1189)
T KOG2041|consen 117 VVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALF 173 (1189)
T ss_pred EEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHh
Confidence 46678999999999999887777777777666544444443 358899987 4433
No 451
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.26 E-value=81 Score=30.94 Aligned_cols=99 Identities=14% Similarity=0.068 Sum_probs=53.8
Q ss_pred EeeeEECCC---C-----------CEEEEEEeCceEEEEECCCCCcccc-ccC----ccceeEEecCC---eEEEEEeCC
Q 044808 152 ITAFKVSPN---N-----------KLVAFRENCGTVCVIDSETGAPAEK-PIQ----GCLEFEWAGDE---AFLYTRRNA 209 (623)
Q Consensus 152 l~~~~~SPD---G-----------~~lA~~~~~~~l~v~dl~tg~~~~~-~i~----~~~~~~WspDg---~l~y~~~d~ 209 (623)
+..+.|.|- | ++|+-+-....+.||+...++-..+ ++. .+..++|.|.- +....+..+
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq 231 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ 231 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC
Confidence 456677776 6 4455443333799999988764332 233 34569999974 333333222
Q ss_pred CCCC-eEEEEECCCCCcccEEEEeecCCceeEEEEEcCCCcEEEE
Q 044808 210 IAEP-QVWFHKLGEEQSKDTCLYRTREDLFDLTLEASESKKFLFV 253 (623)
Q Consensus 210 ~~~~-~v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i 253 (623)
.+. -||..+....+-+.+++ ++ -+.-...++||..|..|.+
T Consensus 232 -Dg~viIwt~~~e~e~wk~tll-~~-f~~~~w~vSWS~sGn~LaV 273 (299)
T KOG1332|consen 232 -DGTVIIWTKDEEYEPWKKTLL-EE-FPDVVWRVSWSLSGNILAV 273 (299)
T ss_pred -CCcEEEEEecCccCccccccc-cc-CCcceEEEEEeccccEEEE
Confidence 222 44544432222222333 32 2223456789999998876
No 452
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.10 E-value=1.6e+02 Score=29.22 Aligned_cols=150 Identities=11% Similarity=0.046 Sum_probs=81.7
Q ss_pred eeeEECCCCCEEEEEEeCc-eEEEEECCCCC-ccc---cccCccceeEEecCC-eEEEEEe-CCCCCC-eEEEEECCCCC
Q 044808 153 TAFKVSPNNKLVAFRENCG-TVCVIDSETGA-PAE---KPIQGCLEFEWAGDE-AFLYTRR-NAIAEP-QVWFHKLGEEQ 224 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~-~~~---~~i~~~~~~~WspDg-~l~y~~~-d~~~~~-~v~~~~lgt~~ 224 (623)
-.++||++..-++++.... .|+++|+.-.. ++. +.-..+.++.|.+-. +.+.+.. |. . ++|..+.. +
T Consensus 64 fdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~---TiKLW~~~r~--~ 138 (311)
T KOG0277|consen 64 FDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDG---TIKLWDPNRP--N 138 (311)
T ss_pred eEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCC---ceEeecCCCC--c
Confidence 3579999999998887765 89999953221 111 111234468898765 5555542 32 2 45444432 2
Q ss_pred cccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecC-CCccceeEEEEeeCCEEEE-EeCCC
Q 044808 225 SKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLP-PWHLGIDMFVSHRGNQFFI-RRSDG 302 (623)
Q Consensus 225 ~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~-~~~~~~~~~~~~dg~~ly~-sn~~g 302 (623)
+ ...|.+.+ .......|||--.-++...+...+-.+|-++..+. ...+. ...+-....|+..+..+++ ..-+
T Consensus 139 S--v~Tf~gh~-~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk--~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd- 212 (311)
T KOG0277|consen 139 S--VQTFNGHN-SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK--FMSIEAHNSEILCCDWSKYNHNVLATGGVD- 212 (311)
T ss_pred c--eEeecCCc-cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc--eeEEEeccceeEeecccccCCcEEEecCCC-
Confidence 2 33454432 23345678887777776555555566776666532 22222 2222223457666666666 3333
Q ss_pred CCCeEEEEEeCCCC
Q 044808 303 GFHSDVLTCPVDNT 316 (623)
Q Consensus 303 ~~~~~L~~~d~~~~ 316 (623)
..|...|+.+-
T Consensus 213 ---~~vr~wDir~~ 223 (311)
T KOG0277|consen 213 ---NLVRGWDIRNL 223 (311)
T ss_pred ---ceEEEEehhhc
Confidence 34566666543
No 453
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=63.34 E-value=12 Score=33.87 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=19.7
Q ss_pred CCCcEEEEEeChHHHHHHHHHHhC
Q 044808 550 SEDNLCIEGGSAGGMLIGAVLNMR 573 (623)
Q Consensus 550 d~~ri~i~G~S~GG~l~~~~~~~~ 573 (623)
...+|.+.|+|.||.++..+....
T Consensus 26 p~~~i~v~GHSlGg~lA~l~a~~~ 49 (153)
T cd00741 26 PDYKIHVTGHSLGGALAGLAGLDL 49 (153)
T ss_pred CCCeEEEEEcCHHHHHHHHHHHHH
Confidence 468999999999999987766554
No 454
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=62.89 E-value=27 Score=36.28 Aligned_cols=117 Identities=19% Similarity=0.240 Sum_probs=70.4
Q ss_pred CCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHC---------CcEEEEEeccCCCcCChhH
Q 044808 450 DGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDR---------GIIFAIAHVRGGDEKGKQW 520 (623)
Q Consensus 450 dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~---------G~~v~~~~~RG~~~~G~~~ 520 (623)
.|.+||-.-+.|+..+...+.+|+|| .||=||+-.. .|. .+..|.+- =|-|++|-.-| || |
T Consensus 132 eGL~iHFlhvk~p~~k~~k~v~PlLl-~HGwPGsv~E-Fyk---fIPlLT~p~~hg~~~d~~FEVI~PSlPG---yg--w 201 (469)
T KOG2565|consen 132 EGLKIHFLHVKPPQKKKKKKVKPLLL-LHGWPGSVRE-FYK---FIPLLTDPKRHGNESDYAFEVIAPSLPG---YG--W 201 (469)
T ss_pred cceeEEEEEecCCccccCCcccceEE-ecCCCchHHH-HHh---hhhhhcCccccCCccceeEEEeccCCCC---cc--c
Confidence 68889987788876522334467766 7998876432 111 11222221 36678888776 43 3
Q ss_pred HHcccccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEE
Q 044808 521 HENGKLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVA 580 (623)
Q Consensus 521 ~~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~ 580 (623)
-++ ....|-+...-..-..+-+...|+ ++-.|.|+-+|...+..++..+|+...+.
T Consensus 202 Sd~-~sk~GFn~~a~ArvmrkLMlRLg~---nkffiqGgDwGSiI~snlasLyPenV~Gl 257 (469)
T KOG2565|consen 202 SDA-PSKTGFNAAATARVMRKLMLRLGY---NKFFIQGGDWGSIIGSNLASLYPENVLGL 257 (469)
T ss_pred CcC-CccCCccHHHHHHHHHHHHHHhCc---ceeEeecCchHHHHHHHHHhhcchhhhHh
Confidence 332 233344443222222223345565 79999999999999999999999864443
No 455
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=62.85 E-value=1.1e+02 Score=33.15 Aligned_cols=168 Identities=13% Similarity=0.099 Sum_probs=0.0
Q ss_pred eeEECCCCCEEEEEEeCc-eEEEEECCCCCccccccCccceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcccEEEEe
Q 044808 154 AFKVSPNNKLVAFRENCG-TVCVIDSETGAPAEKPIQGCLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSKDTCLYR 232 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~~~i~~~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~~ 232 (623)
.++.||+|++++..-+.. .|+- +..........+.+++|++.++++....... |-.++--+......+-..
T Consensus 37 ~ls~npngr~v~V~g~geY~iyt----~~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~----I~I~kn~~~~~~k~i~~~ 108 (443)
T PF04053_consen 37 SLSHNPNGRFVLVCGDGEYEIYT----ALAWRNKAFGSGLSFVWSSRNRYAVLESSST----IKIYKNFKNEVVKSIKLP 108 (443)
T ss_dssp EEEE-TTSSEEEEEETTEEEEEE----TTTTEEEEEEE-SEEEE-TSSEEEEE-TTS-----EEEEETTEE-TT-----S
T ss_pred eEEECCCCCEEEEEcCCEEEEEE----ccCCcccccCceeEEEEecCccEEEEECCCe----EEEEEcCccccceEEcCC
Q ss_pred ecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeecCCCccceeEEEEeeCCEEEE-EeCCCCCCeEEEEE
Q 044808 233 TREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFLPPWHLGIDMFVSHRGNQFFI-RRSDGGFHSDVLTC 311 (623)
Q Consensus 233 ~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l~~~~~~~~~~~~~dg~~ly~-sn~~g~~~~~L~~~ 311 (623)
..-.+.+. |..|.+.... .|.+.|.+++. ...-.+-..-....|+++|+.+.+ +... ..|+..
T Consensus 109 ~~~~~If~-------G~LL~~~~~~----~i~~yDw~~~~-~i~~i~v~~vk~V~Ws~~g~~val~t~~~----i~il~~ 172 (443)
T PF04053_consen 109 FSVEKIFG-------GNLLGVKSSD----FICFYDWETGK-LIRRIDVSAVKYVIWSDDGELVALVTKDS----IYILKY 172 (443)
T ss_dssp S-EEEEE--------SSSEEEEETT----EEEEE-TTT---EEEEESS-E-EEEEE-TTSSEEEEE-S-S----EEEEEE
T ss_pred cccceEEc-------CcEEEEECCC----CEEEEEhhHcc-eeeEEecCCCcEEEEECCCCEEEEEeCCe----EEEEEe
Q ss_pred eCC------CCCceeeEEcCCC-CceEeEEEEeCCEEEEEE
Q 044808 312 PVD------NTFETTVLIPHRE-RVRVEEVRLFADHIAVYE 345 (623)
Q Consensus 312 d~~------~~~~~~~li~~~~-d~~i~~~~~~~~~Lv~~~ 345 (623)
+++ ..+.+.-+-...+ ...|.+..|.++-++++.
T Consensus 173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d~fiYtT 213 (443)
T PF04053_consen 173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVEDCFIYTT 213 (443)
T ss_dssp -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETTEEEEE-
T ss_pred cchhcccccccCchhceEEEEEecceeEEEEEEcCEEEEEc
No 456
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=62.62 E-value=2.5e+02 Score=32.16 Aligned_cols=188 Identities=8% Similarity=0.003 Sum_probs=94.8
Q ss_pred EEeeeEECCCCCEEEEEEeCc-eEEEEECCCCCccccccCcc---ceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcc
Q 044808 151 RITAFKVSPNNKLVAFRENCG-TVCVIDSETGAPAEKPIQGC---LEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSK 226 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~~~i~~~---~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~ 226 (623)
++..+.|++-.-.|..+-+.. .|..||+...+-......+. ..+.|+|--...|.+..+.+ -|-.+++..+.
T Consensus 135 s~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG--~lqlWDlRqp~-- 210 (839)
T KOG0269|consen 135 SANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG--YLQLWDLRQPD-- 210 (839)
T ss_pred ceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc--eEEEeeccCch--
Confidence 566678888877777665444 99999998877554222232 35999987643344333322 35566776442
Q ss_pred cEEEEe-ecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-ceeecCCCccce-eEEEEeeCCEEEE-EeCCC
Q 044808 227 DTCLYR-TREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-TLWFLPPWHLGI-DMFVSHRGNQFFI-RRSDG 302 (623)
Q Consensus 227 d~lv~~-~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l~~~~~~~-~~~~~~dg~~ly~-sn~~g 302 (623)
+..+. ..+-++..-+.|+|++.||+-.. ....+.+.+..++. ..........-+ ...|-|+....+. +..-
T Consensus 211 -r~~~k~~AH~GpV~c~nwhPnr~~lATGG---RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv- 285 (839)
T KOG0269|consen 211 -RCEKKLTAHNGPVLCLNWHPNREWLATGG---RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMV- 285 (839)
T ss_pred -hHHHHhhcccCceEEEeecCCCceeeecC---CCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhcc-
Confidence 11111 01223344567999998876322 22345555655443 111111000000 1235555443333 2221
Q ss_pred CCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeC--CEEEEEEeeCC
Q 044808 303 GFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFA--DHIAVYELEEG 349 (623)
Q Consensus 303 ~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~--~~Lv~~~~~~g 349 (623)
....|.+.|+..+=.....+.++.+ .+.++.|.. ..++.....+|
T Consensus 286 -~dtsV~VWDvrRPYIP~~t~~eH~~-~vt~i~W~~~d~~~l~s~sKD~ 332 (839)
T KOG0269|consen 286 -VDTSVHVWDVRRPYIPYATFLEHTD-SVTGIAWDSGDRINLWSCSKDG 332 (839)
T ss_pred -ccceEEEEeeccccccceeeeccCc-cccceeccCCCceeeEeecCcc
Confidence 1345777777654322223333333 356777765 34445555554
No 457
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=62.11 E-value=95 Score=32.23 Aligned_cols=101 Identities=19% Similarity=0.290 Sum_probs=49.7
Q ss_pred eeEECCCCCEEEEEEeCceEEEEECCCCCc---ccc--ccC--c---cceeEEecC----CeEE--EEEeCCCC--CC-e
Q 044808 154 AFKVSPNNKLVAFRENCGTVCVIDSETGAP---AEK--PIQ--G---CLEFEWAGD----EAFL--YTRRNAIA--EP-Q 214 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~---~~~--~i~--~---~~~~~WspD----g~l~--y~~~d~~~--~~-~ 214 (623)
.+++.|||+.++ +...+.|++++ ..|.. +.+ .+. + .-++++.|+ +.|| |+..+... .. .
T Consensus 6 ~~a~~pdG~l~v-~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~~ 83 (331)
T PF07995_consen 6 SMAFLPDGRLLV-AERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDNR 83 (331)
T ss_dssp EEEEETTSCEEE-EETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEEE
T ss_pred EEEEeCCCcEEE-EeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCccee
Confidence 578999997644 33345899999 44443 111 111 1 124888885 4333 33321111 12 6
Q ss_pred EEEEECCCC--C-cccEEEEee-cC----CceeEEEEEcCCCcEEEEEeec
Q 044808 215 VWFHKLGEE--Q-SKDTCLYRT-RE----DLFDLTLEASESKKFLFVKSKT 257 (623)
Q Consensus 215 v~~~~lgt~--~-~~d~lv~~~-~~----~~~~~~~~~S~Dg~~l~i~s~~ 257 (623)
|.+..+..+ . ...+.|+.. +. ...-..+.+.||| +|++...+
T Consensus 84 v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~ 133 (331)
T PF07995_consen 84 VVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGD 133 (331)
T ss_dssp EEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-
T ss_pred eEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCC
Confidence 777766543 1 112233332 22 1223457899999 77887643
No 458
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=62.05 E-value=2.6e+02 Score=31.14 Aligned_cols=49 Identities=22% Similarity=0.111 Sum_probs=27.8
Q ss_pred eEEEEECCCCcEEEEEEeeecCCCCCCCce----EeeeEEECCCCCeEEEEEEEeCC
Q 044808 411 SAYDYDMNTGISVLKKKETILGGFDESNYV----TESKRAYASDGEEIPISIVYRKN 463 (623)
Q Consensus 411 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~s~dG~~i~~~l~~~~~ 463 (623)
.++.+|+++|+.+- +.+.+. .|.-+|. +-.+.++ .||..+++.+.-.|+
T Consensus 272 s~vAld~~TG~~~W-~~Q~~~--~D~wD~d~~~~p~l~d~~-~~G~~~~~v~~~~K~ 324 (527)
T TIGR03075 272 SIVARDPDTGKIKW-HYQTTP--HDEWDYDGVNEMILFDLK-KDGKPRKLLAHADRN 324 (527)
T ss_pred eEEEEccccCCEEE-eeeCCC--CCCccccCCCCcEEEEec-cCCcEEEEEEEeCCC
Confidence 67889999999764 333332 2222331 2223332 588888876555554
No 459
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=61.30 E-value=1.8e+02 Score=29.05 Aligned_cols=162 Identities=10% Similarity=0.038 Sum_probs=82.5
Q ss_pred ceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-ceeecCCCccceeEEEEeeCCEEEE-EeCCCCCCeEEEEEeCC
Q 044808 237 LFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-TLWFLPPWHLGIDMFVSHRGNQFFI-RRSDGGFHSDVLTCPVD 314 (623)
Q Consensus 237 ~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l~~~~~~~~~~~~~dg~~ly~-sn~~g~~~~~L~~~d~~ 314 (623)
.|.-++.+..|| .|+-++..-+.|.|..+|+.+++ ..+.-.+..---+ .+..-+++||. |.+. ...+.+|.+
T Consensus 45 aFTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgE-Git~~~d~l~qLTWk~----~~~f~yd~~ 118 (264)
T PF05096_consen 45 AFTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGE-GITILGDKLYQLTWKE----GTGFVYDPN 118 (264)
T ss_dssp -EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EE-EEEEETTEEEEEESSS----SEEEEEETT
T ss_pred ccCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccce-eEEEECCEEEEEEecC----CeEEEEccc
Confidence 355566665555 45555555667999999999987 1122222211000 24556889999 9886 467888887
Q ss_pred CCCceeeEEcC-CCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCCCcccccCCceeecCCCceEEEeeeccccCC
Q 044808 315 NTFETTVLIPH-RERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGEPLKTLQGGRTVDIFKSELCISRIHGIRDSQ 393 (623)
Q Consensus 315 ~~~~~~~li~~-~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~~~l~~~~~i~~p~~~~~~~~~~~~~~~~ 393 (623)
+.+.... ++. .+. -++.-+++.|+++ +|..+|+.++..+ -+.. +.+........+..+ .. ..
T Consensus 119 tl~~~~~-~~y~~EG---WGLt~dg~~Li~S---DGS~~L~~~dP~~-f~~~------~~i~V~~~g~pv~~L-NE--LE 181 (264)
T PF05096_consen 119 TLKKIGT-FPYPGEG---WGLTSDGKRLIMS---DGSSRLYFLDPET-FKEV------RTIQVTDNGRPVSNL-NE--LE 181 (264)
T ss_dssp TTEEEEE-EE-SSS-----EEEECSSCEEEE----SSSEEEEE-TTT--SEE------EEEE-EETTEE---E-EE--EE
T ss_pred cceEEEE-EecCCcc---eEEEcCCCEEEEE---CCccceEEECCcc-cceE------EEEEEEECCEECCCc-Ee--EE
Confidence 6543221 111 111 1344455666544 6788999998763 2211 223222111111111 00 11
Q ss_pred cCCceEEEEeecCCCCCeEEEEECCCCcEEE
Q 044808 394 FSSSILRICFYTMRMPFSAYDYDMNTGISVL 424 (623)
Q Consensus 394 ~~~~~~~~~~ss~~~P~~~~~~d~~~~~~~~ 424 (623)
+-++.++. +-..-..|+++|+++|+..-
T Consensus 182 ~i~G~IyA---NVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 182 YINGKIYA---NVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp EETTEEEE---EETTSSEEEEEETTT-BEEE
T ss_pred EEcCEEEE---EeCCCCeEEEEeCCCCeEEE
Confidence 12344433 43556799999999999653
No 460
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=60.49 E-value=20 Score=37.94 Aligned_cols=85 Identities=19% Similarity=0.261 Sum_probs=58.8
Q ss_pred hhhHHHHHCCcEEEEEeccCCCcCChhHHHcccccCCCchHhHHH-----HHHHHHHHcCCCCCCcEEEEEeChHHHHHH
Q 044808 493 ASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLLNKRNTFTDFI-----ACADYLIKSNYCSEDNLCIEGGSAGGMLIG 567 (623)
Q Consensus 493 ~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~~~~~~~~D~~-----~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~ 567 (623)
.....++++|.-|..++.|+-.. +.+ ...++|.+ .|++...+. +-.++|=..|.+.||.+.+
T Consensus 130 s~V~~l~~~g~~vfvIsw~nPd~-~~~----------~~~~edYi~e~l~~aid~v~~i--tg~~~InliGyCvGGtl~~ 196 (445)
T COG3243 130 SLVRWLLEQGLDVFVISWRNPDA-SLA----------AKNLEDYILEGLSEAIDTVKDI--TGQKDINLIGYCVGGTLLA 196 (445)
T ss_pred cHHHHHHHcCCceEEEeccCchH-hhh----------hccHHHHHHHHHHHHHHHHHHH--hCccccceeeEecchHHHH
Confidence 45678899999999999886332 211 23444544 566666554 3347999999999999999
Q ss_pred HHHHhCCCe-eeEEEecCCccchh
Q 044808 568 AVLNMRPEL-FKVAVADVPSVDVL 590 (623)
Q Consensus 568 ~~~~~~p~~-f~a~v~~~~~~d~~ 590 (623)
++++.++.. .+.+....-.+|..
T Consensus 197 ~ala~~~~k~I~S~T~lts~~DF~ 220 (445)
T COG3243 197 AALALMAAKRIKSLTLLTSPVDFS 220 (445)
T ss_pred HHHHhhhhcccccceeeecchhhc
Confidence 999888876 56665555555543
No 461
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=60.48 E-value=1.9e+02 Score=29.05 Aligned_cols=175 Identities=11% Similarity=0.064 Sum_probs=92.0
Q ss_pred eeEECCCCCEEEEEEeCc-eEEEEECCCCCccccccC------ccceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcc
Q 044808 154 AFKVSPNNKLVAFRENCG-TVCVIDSETGAPAEKPIQ------GCLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSK 226 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~~~i~------~~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~ 226 (623)
.+.+-|||. ++..|.+ .|.-+|.++++...-+++ +.....|.++|.+.|+....- .-+|.- ...
T Consensus 108 giv~gpdg~--~Witd~~~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~------yGrLdP-a~~ 178 (353)
T COG4257 108 GIVVGPDGS--AWITDTGLAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGA------YGRLDP-ARN 178 (353)
T ss_pred eEEECCCCC--eeEecCcceeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeecccc------ceecCc-ccC
Confidence 468889997 5666766 788888888876543333 122488888888888865221 112211 112
Q ss_pred cEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCCceeec-CCCc--cceeEEEEeeCCEEEEEeCCCC
Q 044808 227 DTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPETLWFL-PPWH--LGIDMFVSHRGNQFFIRRSDGG 303 (623)
Q Consensus 227 d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~~~~~l-~~~~--~~~~~~~~~dg~~ly~sn~~g~ 303 (623)
...+|..+...--.++..+|||+- .+.+. ..+-|-.+|..++. ...+ .|.. .+..-.++..-+++++|+..
T Consensus 179 ~i~vfpaPqG~gpyGi~atpdGsv-wyasl--agnaiaridp~~~~-aev~p~P~~~~~gsRriwsdpig~~wittwg-- 252 (353)
T COG4257 179 VISVFPAPQGGGPYGICATPDGSV-WYASL--AGNAIARIDPFAGH-AEVVPQPNALKAGSRRIWSDPIGRAWITTWG-- 252 (353)
T ss_pred ceeeeccCCCCCCcceEECCCCcE-EEEec--cccceEEcccccCC-cceecCCCcccccccccccCccCcEEEeccC--
Confidence 344554332111234667899974 33322 23456666665554 2222 2221 11111233334567776544
Q ss_pred CCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeC-CEEEEEE
Q 044808 304 FHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFA-DHIAVYE 345 (623)
Q Consensus 304 ~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~-~~Lv~~~ 345 (623)
+.+|+++|........|-+|...-. -.++.+++ +++.+++
T Consensus 253 -~g~l~rfdPs~~sW~eypLPgs~ar-pys~rVD~~grVW~se 293 (353)
T COG4257 253 -TGSLHRFDPSVTSWIEYPLPGSKAR-PYSMRVDRHGRVWLSE 293 (353)
T ss_pred -CceeeEeCcccccceeeeCCCCCCC-cceeeeccCCcEEeec
Confidence 4689999987765555555544321 23455544 3444433
No 462
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=60.10 E-value=2e+02 Score=29.08 Aligned_cols=204 Identities=14% Similarity=0.146 Sum_probs=91.3
Q ss_pred EeeeEEC--CCCC-EEEEEEeCc------eEEEEECCCCCcccc-ccCcc---ceeEEecCCeEEEEEeCCCCCCeEEEE
Q 044808 152 ITAFKVS--PNNK-LVAFRENCG------TVCVIDSETGAPAEK-PIQGC---LEFEWAGDEAFLYTRRNAIAEPQVWFH 218 (623)
Q Consensus 152 l~~~~~S--PDG~-~lA~~~~~~------~l~v~dl~tg~~~~~-~i~~~---~~~~WspDg~l~y~~~d~~~~~~v~~~ 218 (623)
+-++.|| ||-+ +||.++-.. +|.-+|.++|+.+.+ .++.. .-+-|.||..=.|...-.+....+.++
T Consensus 47 lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlW 126 (364)
T KOG0290|consen 47 LYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLW 126 (364)
T ss_pred eeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeEEEE
Confidence 3344455 5555 588875332 555567778887764 23322 238999997212221111111134445
Q ss_pred ECCCCCc--ccEEEE-eecCCcee---EEEEEcCCCcEEEEEeecceeeEEEEEECC-CCC-ceeecCCCccceeEEEEe
Q 044808 219 KLGEEQS--KDTCLY-RTREDLFD---LTLEASESKKFLFVKSKTKVTGFVYYFDVS-RPE-TLWFLPPWHLGIDMFVSH 290 (623)
Q Consensus 219 ~lgt~~~--~d~lv~-~~~~~~~~---~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~-~~~-~~~~l~~~~~~~~~~~~~ 290 (623)
+++.... +...+. ...+..|. .++.|..-.-.++.+++-.++..||-+... .+. +.+++.-.++-....|.-
T Consensus 127 ri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~ 206 (364)
T KOG0290|consen 127 RIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLK 206 (364)
T ss_pred eccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEecc
Confidence 5553211 111111 12222332 234555433344444554566777766543 222 233333222222224555
Q ss_pred eCCEEEE-EeCCCCCCeEEEEEeCCCCCceeeEEcCCCC--ceEeEEEEeC-CEEEEEEeeCCcceEEEEECCC
Q 044808 291 RGNQFFI-RRSDGGFHSDVLTCPVDNTFETTVLIPHRER--VRVEEVRLFA-DHIAVYELEEGLPKITTYCLPP 360 (623)
Q Consensus 291 dg~~ly~-sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d--~~i~~~~~~~-~~Lv~~~~~~g~~~l~v~~l~~ 360 (623)
.+..++. ...+ +.+...|+...+-.+ +|-+++. ..+..+++.+ +-=|+..-.....++.++|+..
T Consensus 207 ~s~~~FASvgaD----GSvRmFDLR~leHST-IIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~ 275 (364)
T KOG0290|consen 207 GSRDVFASVGAD----GSVRMFDLRSLEHST-IIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRV 275 (364)
T ss_pred CccceEEEecCC----CcEEEEEecccccce-EEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecC
Confidence 4444555 3344 345566665433222 4555443 2344555543 2222222223345677777653
No 463
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=59.54 E-value=1.6e+02 Score=27.75 Aligned_cols=78 Identities=21% Similarity=0.181 Sum_probs=54.0
Q ss_pred eeEECCCCCEEEEEEeCc---------eEEEEECCCCCccccccCcc----c--eeEEecCCeEEEEEeCCC---CCC-e
Q 044808 154 AFKVSPNNKLVAFRENCG---------TVCVIDSETGAPAEKPIQGC----L--EFEWAGDEAFLYTRRNAI---AEP-Q 214 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~---------~l~v~dl~tg~~~~~~i~~~----~--~~~WspDg~l~y~~~d~~---~~~-~ 214 (623)
.+.=|-+|++=|+..-.+ .||++|+.+++.....+... . .+.|..|..|+++-...- ... .
T Consensus 62 ~wk~s~~~~~saciegkg~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GTvS~GGn 141 (200)
T PF15525_consen 62 KWKNSENGKYSACIEGKGPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGTVSKGGN 141 (200)
T ss_pred ccccccCCceeEEEEcCCCccccccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccceEccCCe
Confidence 467789999999987544 89999999998764333322 2 389999886665543211 112 7
Q ss_pred EEEEECCCCCcccEEEEee
Q 044808 215 VWFHKLGEEQSKDTCLYRT 233 (623)
Q Consensus 215 v~~~~lgt~~~~d~lv~~~ 233 (623)
||.+++.+++. ..++..
T Consensus 142 Ly~~nl~tg~~--~~ly~~ 158 (200)
T PF15525_consen 142 LYKYNLNTGNL--TELYEW 158 (200)
T ss_pred EEEEEccCCce--eEeeec
Confidence 99999999853 556653
No 464
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=59.36 E-value=35 Score=37.79 Aligned_cols=98 Identities=13% Similarity=0.101 Sum_probs=59.2
Q ss_pred eEEeechhhcccCC-CC-cEEEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCccceeEEe---cCC-eEEEEE
Q 044808 133 EVIIDEEVIKYKNS-LE-NYRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQGCLEFEWA---GDE-AFLYTR 206 (623)
Q Consensus 133 ~vllD~n~~a~~~~-~~-~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~~~~~~Ws---pDg-~l~y~~ 206 (623)
-.|.||-.-.+--. .| +--+..+.+++||+++.-+.+.++|++|||.-.+-+..-+-... ..|+ ..+ ..+|..
T Consensus 195 lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG 273 (735)
T KOG0308|consen 195 LRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSG 273 (735)
T ss_pred eEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC-ceEEEeeCCCcceEEec
Confidence 45677765432100 02 34577789999999999998888999999976543321111111 2443 223 455543
Q ss_pred eCCCCCC-eEEEEECCCCCcccEEEEeecCC
Q 044808 207 RNAIAEP-QVWFHKLGEEQSKDTCLYRTRED 236 (623)
Q Consensus 207 ~d~~~~~-~v~~~~lgt~~~~d~lv~~~~~~ 236 (623)
+|. .||+-++.+.. +-++|+++..|
T Consensus 274 ----~rd~~i~~Tdl~n~~-~~tlick~daP 299 (735)
T KOG0308|consen 274 ----GRDGNIYRTDLRNPA-KSTLICKEDAP 299 (735)
T ss_pred ----CCCCcEEecccCCch-hheEeecCCCc
Confidence 233 68999998753 46778775543
No 465
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=59.16 E-value=19 Score=35.83 Aligned_cols=54 Identities=9% Similarity=0.051 Sum_probs=36.2
Q ss_pred CeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEec
Q 044808 452 EEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHV 510 (623)
Q Consensus 452 ~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~ 510 (623)
..+.+.+..|++. ...++.|+++..||.-..... .. .....++.+++.++....
T Consensus 31 ~~~~~~l~~p~~~-~~~~~~p~v~~~h~~~~~~~~--~~--~~~~~l~~~~~~~~~~~~ 84 (299)
T COG1073 31 IALAAVLHLPPSG-NEEKKLPAVVFLHGFGSSKEQ--SL--GYAVLLAEKGYRVLAGDA 84 (299)
T ss_pred ceeeeEEEecCCC-CccccCceEEeccCccccccC--cc--hHHHHhhhceeEEeeecc
Confidence 5678888888876 444689999999985433322 11 234567778888777654
No 466
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=59.04 E-value=2.4e+02 Score=29.65 Aligned_cols=70 Identities=21% Similarity=0.276 Sum_probs=45.6
Q ss_pred EEEeeCCEEEE-EeCCCCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEeCCEEEEEEeeCCcceEEEEECCCCCCCc
Q 044808 287 FVSHRGNQFFI-RRSDGGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLFADHIAVYELEEGLPKITTYCLPPVGEPL 365 (623)
Q Consensus 287 ~~~~dg~~ly~-sn~~g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~~~~Lv~~~~~~g~~~l~v~~l~~~g~~~ 365 (623)
.|++|+ ++++ +++++ ..++..++.. .....|.+.|.+ .+..+++..++++++. .|-..|++|++.. |+.+
T Consensus 158 avS~D~-~~IitaDRDE--kIRvs~ypa~-f~IesfclGH~e--FVS~isl~~~~~LlS~--sGD~tlr~Wd~~s-gk~L 228 (390)
T KOG3914|consen 158 AVSPDD-QFIITADRDE--KIRVSRYPAT-FVIESFCLGHKE--FVSTISLTDNYLLLSG--SGDKTLRLWDITS-GKLL 228 (390)
T ss_pred eecCCC-CEEEEecCCc--eEEEEecCcc-cchhhhccccHh--heeeeeeccCceeeec--CCCCcEEEEeccc-CCcc
Confidence 477876 5666 88873 4566665532 223455665543 3678999888886666 4555699999886 7644
No 467
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=58.90 E-value=14 Score=39.91 Aligned_cols=48 Identities=13% Similarity=0.023 Sum_probs=32.2
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc---ccCccceeEEec
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK---PIQGCLEFEWAG 198 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~---~i~~~~~~~Wsp 198 (623)
-+-.+.||||||+|+-+-.+.-+-||.+..++++.. .-.+++.++|.|
T Consensus 334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 345679999999999985544677888887777652 112333466644
No 468
>PRK13615 lipoprotein LpqB; Provisional
Probab=58.54 E-value=62 Score=36.17 Aligned_cols=73 Identities=19% Similarity=0.309 Sum_probs=45.1
Q ss_pred EEeeeEECCCCCEEEEEEeCc---eEEEEEC--CCCC--cc-ccc--c----CccceeEEecCCeEEEEEeCCCCCCeEE
Q 044808 151 RITAFKVSPNNKLVAFRENCG---TVCVIDS--ETGA--PA-EKP--I----QGCLEFEWAGDEAFLYTRRNAIAEPQVW 216 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~---~l~v~dl--~tg~--~~-~~~--i----~~~~~~~WspDg~l~y~~~d~~~~~~v~ 216 (623)
.|..+++|+||-++|...+.+ +|+|--+ .++. .+ ... + ..+.++.|..|++|+..........+++
T Consensus 418 ~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~laVl~~~~~~~~~v~ 497 (557)
T PRK13615 418 RVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDVATLTLAPDGERQVE 497 (557)
T ss_pred eeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEEEEEeccCCCCceEE
Confidence 588999999999999997633 4444211 3441 23 211 1 1223599999998876653222222788
Q ss_pred EEECCCC
Q 044808 217 FHKLGEE 223 (623)
Q Consensus 217 ~~~lgt~ 223 (623)
++.++.+
T Consensus 498 ~v~v~g~ 504 (557)
T PRK13615 498 LHQVGGP 504 (557)
T ss_pred EEECCCc
Confidence 8888854
No 469
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=57.71 E-value=15 Score=40.57 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=30.7
Q ss_pred eeeEECCCCCEEEEEEeCceEEEEECCCCCcccc
Q 044808 153 TAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK 186 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~ 186 (623)
....|-|||+.||++...++|.+.|+++|..+..
T Consensus 66 ~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~ 99 (665)
T KOG4640|consen 66 ASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS 99 (665)
T ss_pred eeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence 4789999999999999889999999999987764
No 470
>PRK13615 lipoprotein LpqB; Provisional
Probab=57.42 E-value=3.2e+02 Score=30.66 Aligned_cols=155 Identities=12% Similarity=-0.019 Sum_probs=78.6
Q ss_pred eeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCc--cceeEEecCCeEEEEEeCCCCCC-eEEEEECCCCCcccEE
Q 044808 153 TAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQG--CLEFEWAGDEAFLYTRRNAIAEP-QVWFHKLGEEQSKDTC 229 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~--~~~~~WspDg~l~y~~~d~~~~~-~v~~~~lgt~~~~d~l 229 (623)
..+.+|+||+.+|+......+++....+.... .... ...+.|.++|.++ +..+.. + .+.+.. .++. ...
T Consensus 337 ~s~avS~dg~~~A~v~~~~~l~vg~~~~~~~~--~~~~~~Lt~PS~d~~g~vW-tv~~g~--~~~l~~~~-~~G~--~~~ 408 (557)
T PRK13615 337 DAATLSADGRQAAVRNASGVWSVGDGDRDAVL--LDTRPGLVAPSLDAQGYVW-STPASD--PRGLVAWG-PDGV--GHP 408 (557)
T ss_pred ccceEcCCCceEEEEcCCceEEEecCCCccee--eccCCccccCcCcCCCCEE-EEeCCC--ceEEEEec-CCCc--eEE
Confidence 57899999999999965447777765522111 1222 1237888877333 333322 2 332222 2221 111
Q ss_pred E-EeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCC-CCceeec--CCCc-----cce-eEEEEeeCCEEEE-E
Q 044808 230 L-YRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSR-PETLWFL--PPWH-----LGI-DMFVSHRGNQFFI-R 298 (623)
Q Consensus 230 v-~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~-~~~~~~l--~~~~-----~~~-~~~~~~dg~~ly~-s 298 (623)
+ ..-....-...+.+|+||-.+++.+...+...|++.-+.. +..++.| .++. ... ...|.. ++.|.+ +
T Consensus 409 v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~-~~~laVl~ 487 (557)
T PRK13615 409 VAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVD-ELDVATLT 487 (557)
T ss_pred eeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcC-CCEEEEEe
Confidence 2 1111122345678999999988876544445566633222 1113233 2211 111 123444 566777 6
Q ss_pred eCCCCCCeEEEEEeCCCCC
Q 044808 299 RSDGGFHSDVLTCPVDNTF 317 (623)
Q Consensus 299 n~~g~~~~~L~~~d~~~~~ 317 (623)
... ..+..++.+++..+.
T Consensus 488 ~~~-~~~~~v~~v~v~g~~ 505 (557)
T PRK13615 488 LAP-DGERQVELHQVGGPS 505 (557)
T ss_pred ccC-CCCceEEEEECCCcc
Confidence 433 234567777777553
No 471
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=57.27 E-value=1.1e+02 Score=28.47 Aligned_cols=59 Identities=14% Similarity=0.076 Sum_probs=44.3
Q ss_pred cccCCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhCCCeeeEEEecCCc
Q 044808 525 KLLNKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMRPELFKVAVADVPS 586 (623)
Q Consensus 525 ~~~~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~p~~f~a~v~~~~~ 586 (623)
.-+|-.-.++|.++.++--+..- ++-+.+.++|-|+.+++..+.+.-...+.++..+|.
T Consensus 35 q~~w~~P~~~dWi~~l~~~v~a~---~~~~vlVAHSLGc~~v~h~~~~~~~~V~GalLVApp 93 (181)
T COG3545 35 QDDWEAPVLDDWIARLEKEVNAA---EGPVVLVAHSLGCATVAHWAEHIQRQVAGALLVAPP 93 (181)
T ss_pred cCCCCCCCHHHHHHHHHHHHhcc---CCCeEEEEecccHHHHHHHHHhhhhccceEEEecCC
Confidence 34566778899998888666543 445999999999999998887654466777777664
No 472
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=56.72 E-value=38 Score=36.20 Aligned_cols=93 Identities=14% Similarity=0.152 Sum_probs=54.2
Q ss_pred CccEEEEEcCCCCCCCCCCCCchhhhHHHHHCCcEEEEEeccC--CCcCChhHHHcccccCCCchHhHHHHHHHHHHHcC
Q 044808 470 SDPLLLFGYGSYGLGPSSYSNSIASRLTILDRGIIFAIAHVRG--GDEKGKQWHENGKLLNKRNTFTDFIACADYLIKSN 547 (623)
Q Consensus 470 ~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~RG--~~~~G~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~ 547 (623)
+.|+++..-=-......|... .....|.+.|+.|+-|..-= .|+. +.-+..+.++++..+..+....
T Consensus 116 ~~pvvi~Pamn~~m~~~p~~~--~Nl~~L~~~G~~ii~P~~g~la~~~~---------g~gr~~~~~~I~~~~~~~~~~~ 184 (399)
T PRK05579 116 TAPVLVAPAMNTQMWENPATQ--RNLATLRSRGVEIIGPASGRLACGDV---------GPGRMAEPEEIVAAAERALSPK 184 (399)
T ss_pred CCCEEEEeCCChhHcCCHHHH--HHHHHHHHCCCEEECCCCccccCCCc---------CCCCCCCHHHHHHHHHHHhhhc
Confidence 468888642111111122223 44567888899988665311 1111 2234678889888887665433
Q ss_pred CCCCCcEEEEEe---------------ChH--HHHHHHHHHhC
Q 044808 548 YCSEDNLCIEGG---------------SAG--GMLIGAVLNMR 573 (623)
Q Consensus 548 ~~d~~ri~i~G~---------------S~G--G~l~~~~~~~~ 573 (623)
-....++.|.|+ |.| |+..+..+..+
T Consensus 185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~ 227 (399)
T PRK05579 185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARR 227 (399)
T ss_pred ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHC
Confidence 344578999999 777 66666655553
No 473
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=55.75 E-value=33 Score=34.20 Aligned_cols=114 Identities=18% Similarity=0.177 Sum_probs=57.3
Q ss_pred CCccEEEEEcCCCCCCCCCCCCchhhhHHHH-HCCc----EEEEEeccCCCcCChhHHHcc--------cccCCC----c
Q 044808 469 GSDPLLLFGYGSYGLGPSSYSNSIASRLTIL-DRGI----IFAIAHVRGGDEKGKQWHENG--------KLLNKR----N 531 (623)
Q Consensus 469 ~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~-~~G~----~v~~~~~RG~~~~G~~~~~~~--------~~~~~~----~ 531 (623)
...|+|+ +|| ++++ ..+|. .....+. +.|. .++.+..-|.-.+-..|.... ..++.. .
T Consensus 10 ~~tPTif-ihG-~~gt-~~s~~--~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~ 84 (255)
T PF06028_consen 10 STTPTIF-IHG-YGGT-ANSFN--HMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKK 84 (255)
T ss_dssp S-EEEEE-E---TTGG-CCCCH--HHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHH
T ss_pred CCCcEEE-ECC-CCCC-hhHHH--HHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHH
Confidence 3457754 787 3433 23566 6677776 4443 344444444333433343211 111111 1
Q ss_pred hHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHhC------CCeeeEEEecCCccchh
Q 044808 532 TFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNMR------PELFKVAVADVPSVDVL 590 (623)
Q Consensus 532 ~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~~------p~~f~a~v~~~~~~d~~ 590 (623)
...=+..++.+|.++--+ .++=+.|+|+||......+..+ |.+ .-.|+.++-.|-+
T Consensus 85 qa~wl~~vl~~L~~~Y~~--~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l-~K~V~Ia~pfng~ 146 (255)
T PF06028_consen 85 QAKWLKKVLKYLKKKYHF--KKFNLVGHSMGGLSWTYYLENYGNDKNLPKL-NKLVTIAGPFNGI 146 (255)
T ss_dssp HHHHHHHHHHHHHHCC----SEEEEEEETHHHHHHHHHHHHCTTGTTS-EE-EEEEEES--TTTT
T ss_pred HHHHHHHHHHHHHHhcCC--CEEeEEEECccHHHHHHHHHHhccCCCCccc-ceEEEeccccCcc
Confidence 223345677777776334 5999999999999988887763 344 4445544444433
No 474
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=55.74 E-value=2.1e+02 Score=28.03 Aligned_cols=188 Identities=12% Similarity=0.099 Sum_probs=94.2
Q ss_pred EEeeeEECCCCCEE-EEEEeCceEEEEECCCCCccccccCc----cceeEEecCC-eEEEEEeCCCCCC-eEEEEECCCC
Q 044808 151 RITAFKVSPNNKLV-AFRENCGTVCVIDSETGAPAEKPIQG----CLEFEWAGDE-AFLYTRRNAIAEP-QVWFHKLGEE 223 (623)
Q Consensus 151 ~l~~~~~SPDG~~l-A~~~~~~~l~v~dl~tg~~~~~~i~~----~~~~~WspDg-~l~y~~~d~~~~~-~v~~~~lgt~ 223 (623)
.+..+++.-||+|. +.+.+. +|++|++..|..+.. -.+ +-..+-+-|+ +|.-.- .. .++++++.|+
T Consensus 19 aV~avryN~dGnY~ltcGsdr-tvrLWNp~rg~likt-YsghG~EVlD~~~s~Dnskf~s~G-----gDk~v~vwDV~TG 91 (307)
T KOG0316|consen 19 AVRAVRYNVDGNYCLTCGSDR-TVRLWNPLRGALIKT-YSGHGHEVLDAALSSDNSKFASCG-----GDKAVQVWDVNTG 91 (307)
T ss_pred ceEEEEEccCCCEEEEcCCCc-eEEeecccccceeee-ecCCCceeeeccccccccccccCC-----CCceEEEEEcccC
Confidence 46678999999984 444444 899999999877642 111 1124445566 554322 23 6888899888
Q ss_pred CcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-ceeec-CCCccceeEEEEeeCCEEEEEeCC
Q 044808 224 QSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-TLWFL-PPWHLGIDMFVSHRGNQFFIRRSD 301 (623)
Q Consensus 224 ~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l-~~~~~~~~~~~~~dg~~ly~sn~~ 301 (623)
+.. .-|.....+ .-.+.+..+..- ++ +....+.+.+.|..... ++..+ -...+++. ++.-.+..+.--.-+
T Consensus 92 kv~--Rr~rgH~aq-VNtV~fNeesSV-v~--SgsfD~s~r~wDCRS~s~ePiQildea~D~V~-Si~v~~heIvaGS~D 164 (307)
T KOG0316|consen 92 KVD--RRFRGHLAQ-VNTVRFNEESSV-VA--SGSFDSSVRLWDCRSRSFEPIQILDEAKDGVS-SIDVAEHEIVAGSVD 164 (307)
T ss_pred eee--eecccccce-eeEEEecCcceE-EE--eccccceeEEEEcccCCCCccchhhhhcCcee-EEEecccEEEeeccC
Confidence 531 123322221 112445544433 32 22334566667766554 23333 33444433 344433334332223
Q ss_pred CCCCeEEEEEeCCCCCceeeEEcCCCCceEeEEEEe--CCEEEEEEeeCCcceEEEEECCCCCCC
Q 044808 302 GGFHSDVLTCPVDNTFETTVLIPHRERVRVEEVRLF--ADHIAVYELEEGLPKITTYCLPPVGEP 364 (623)
Q Consensus 302 g~~~~~L~~~d~~~~~~~~~li~~~~d~~i~~~~~~--~~~Lv~~~~~~g~~~l~v~~l~~~g~~ 364 (623)
+.+.++|+..+....=-+. ..|..+... ++.+++.... +.|++++.++ |+.
T Consensus 165 ----GtvRtydiR~G~l~sDy~g----~pit~vs~s~d~nc~La~~l~---stlrLlDk~t-Gkl 217 (307)
T KOG0316|consen 165 ----GTVRTYDIRKGTLSSDYFG----HPITSVSFSKDGNCSLASSLD---STLRLLDKET-GKL 217 (307)
T ss_pred ----CcEEEEEeecceeehhhcC----CcceeEEecCCCCEEEEeecc---ceeeecccch-hHH
Confidence 2344555544421100111 124444444 4555555443 3477888776 653
No 475
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=55.68 E-value=3.1e+02 Score=29.92 Aligned_cols=79 Identities=10% Similarity=0.103 Sum_probs=41.9
Q ss_pred cCccceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcccEE----EEeecCCceeEEEEEcCCC------cEEEEEeec
Q 044808 188 IQGCLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSKDTC----LYRTREDLFDLTLEASESK------KFLFVKSKT 257 (623)
Q Consensus 188 i~~~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~d~l----v~~~~~~~~~~~~~~S~Dg------~~l~i~s~~ 257 (623)
++.-++++|.|||+++++.... -+|++.+.++....... +.......=.++++++||- ++|++....
T Consensus 29 L~~Pw~maflPDG~llVtER~~---G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~ 105 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVTERAT---GKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTY 105 (454)
T ss_pred CCCceEEEEcCCCeEEEEEecC---CEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEec
Confidence 3344579999999888775421 16777765543211111 1111111224677888774 467665322
Q ss_pred c-------eeeEEEEEECC
Q 044808 258 K-------VTGFVYYFDVS 269 (623)
Q Consensus 258 ~-------~~s~l~~~dl~ 269 (623)
. ..+.|..+.+.
T Consensus 106 ~~~~~~~~~~~~I~R~~l~ 124 (454)
T TIGR03606 106 KNGDKELPNHTKIVRYTYD 124 (454)
T ss_pred cCCCCCccCCcEEEEEEec
Confidence 1 23567666654
No 476
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=55.52 E-value=21 Score=23.84 Aligned_cols=27 Identities=26% Similarity=0.340 Sum_probs=19.6
Q ss_pred CCCCEEEEEEeCc-eEEEEECCCCCccc
Q 044808 159 PNNKLVAFRENCG-TVCVIDSETGAPAE 185 (623)
Q Consensus 159 PDG~~lA~~~~~~-~l~v~dl~tg~~~~ 185 (623)
|||++|..+.... +|.++|+++++.+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~ 28 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIA 28 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEE
Confidence 7888866554333 89999998887664
No 477
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.44 E-value=15 Score=41.81 Aligned_cols=45 Identities=16% Similarity=0.256 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHc--C--CCC---CCcEEEEEeChHHHHHHHHHHhCCCeeeE
Q 044808 534 TDFIACADYLIKS--N--YCS---EDNLCIEGGSAGGMLIGAVLNMRPELFKV 579 (623)
Q Consensus 534 ~D~~~~~~~l~~~--~--~~d---~~ri~i~G~S~GG~l~~~~~~~~p~~f~a 579 (623)
+=+.+|+.+..++ + --+ |.-|.+.|+|+||+.+-++++. |+..+.
T Consensus 157 EYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tl-kn~~~~ 208 (973)
T KOG3724|consen 157 EYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTL-KNEVQG 208 (973)
T ss_pred HHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhh-hhhccc
Confidence 4455677776642 2 223 7789999999999999888875 554443
No 478
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=54.65 E-value=1e+02 Score=31.57 Aligned_cols=74 Identities=15% Similarity=0.118 Sum_probs=42.9
Q ss_pred eEEEEECCCCCccccccCccceeEEecCCeEEEEEeCCCCCCeEEEEECCCCCcccEEEEeecCCceeEEEEEcCCCcEE
Q 044808 172 TVCVIDSETGAPAEKPIQGCLEFEWAGDEAFLYTRRNAIAEPQVWFHKLGEEQSKDTCLYRTREDLFDLTLEASESKKFL 251 (623)
Q Consensus 172 ~l~v~dl~tg~~~~~~i~~~~~~~WspDg~l~y~~~d~~~~~~v~~~~lgt~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l 251 (623)
.=.|+|+.+++++.+-+.--.++.| .||+|++.-.. .-+++..+..++.. ..|..- |+|.-++.|- |+++
T Consensus 186 gG~vidv~s~evl~~GLsmPhSPRW-hdgrLwvldsg---tGev~~vD~~~G~~--e~Va~v--pG~~rGL~f~--G~ll 255 (335)
T TIGR03032 186 GGCVIDIPSGEVVASGLSMPHSPRW-YQGKLWLLNSG---RGELGYVDPQAGKF--QPVAFL--PGFTRGLAFA--GDFA 255 (335)
T ss_pred CeEEEEeCCCCEEEcCccCCcCCcE-eCCeEEEEECC---CCEEEEEcCCCCcE--EEEEEC--CCCCccccee--CCEE
Confidence 3556888888876432222224778 45677776432 12688888776643 333322 3455566665 8887
Q ss_pred EEEe
Q 044808 252 FVKS 255 (623)
Q Consensus 252 ~i~s 255 (623)
++.-
T Consensus 256 vVgm 259 (335)
T TIGR03032 256 FVGL 259 (335)
T ss_pred EEEe
Confidence 7753
No 479
>PRK13614 lipoprotein LpqB; Provisional
Probab=53.75 E-value=90 Score=35.05 Aligned_cols=73 Identities=19% Similarity=0.264 Sum_probs=46.5
Q ss_pred EEeeeEECCCCCEEEEEEeCc---eEEEE---ECCCCCc--cccccC-----ccceeEEecCCeEEEEEeCCCCCCeEEE
Q 044808 151 RITAFKVSPNNKLVAFRENCG---TVCVI---DSETGAP--AEKPIQ-----GCLEFEWAGDEAFLYTRRNAIAEPQVWF 217 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~---~l~v~---dl~tg~~--~~~~i~-----~~~~~~WspDg~l~y~~~d~~~~~~v~~ 217 (623)
.|..+++|+||-++|.....+ +|+|- .-..|++ +...+. .+.++.|..|++|+..+.......++++
T Consensus 435 ~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~~~~~~~~~~~~~ 514 (573)
T PRK13614 435 TVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVVVTKASATSNVVPEL 514 (573)
T ss_pred eeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEEEEeccCCCcceEEE
Confidence 488999999999999987333 45552 2345652 221111 2235999999988877654322237788
Q ss_pred EECCCC
Q 044808 218 HKLGEE 223 (623)
Q Consensus 218 ~~lgt~ 223 (623)
+.++.+
T Consensus 515 v~v~~g 520 (573)
T PRK13614 515 LSVDAG 520 (573)
T ss_pred EEeCCC
Confidence 888544
No 480
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=52.78 E-value=2.9e+02 Score=30.59 Aligned_cols=70 Identities=11% Similarity=0.163 Sum_probs=49.6
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCcccc-----c---------cCccceeEEecCC-eEEEEEeCCCCCCeE
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK-----P---------IQGCLEFEWAGDE-AFLYTRRNAIAEPQV 215 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~-----~---------i~~~~~~~WspDg-~l~y~~~d~~~~~~v 215 (623)
.+..+.++|-+.+||++-..+.+-.||..+...+.. . .+.+..+.|+.|| .+...+... .|
T Consensus 177 ~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G----~v 252 (703)
T KOG2321|consen 177 ELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTG----SV 252 (703)
T ss_pred cceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCC----cE
Confidence 356789999999999998777788888876654320 1 1112348899988 777765432 69
Q ss_pred EEEECCCCC
Q 044808 216 WFHKLGEEQ 224 (623)
Q Consensus 216 ~~~~lgt~~ 224 (623)
++|+|.+..
T Consensus 253 ~iyDLRa~~ 261 (703)
T KOG2321|consen 253 LIYDLRASK 261 (703)
T ss_pred EEEEcccCC
Confidence 999998763
No 481
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=52.62 E-value=79 Score=31.27 Aligned_cols=97 Identities=18% Similarity=0.097 Sum_probs=54.3
Q ss_pred CCccEEEEEcCCCCCCCCCCCCchhhhHHHHHCC-----cEEEEEeccCCCcCChhHHHcc-------cccCCCchHhHH
Q 044808 469 GSDPLLLFGYGSYGLGPSSYSNSIASRLTILDRG-----IIFAIAHVRGGDEKGKQWHENG-------KLLNKRNTFTDF 536 (623)
Q Consensus 469 ~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~G-----~~v~~~~~RG~~~~G~~~~~~~-------~~~~~~~~~~D~ 536 (623)
...|+|+ +||.-|.. .++. .....++.+| -.++.++.-|+--+-....+.. -...+.....|+
T Consensus 44 ~~iPTIf-IhGsgG~a--sS~~--~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~ 118 (288)
T COG4814 44 VAIPTIF-IHGSGGTA--SSLN--GMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQ 118 (288)
T ss_pred cccceEE-EecCCCCh--hHHH--HHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhH
Confidence 3578864 78843333 1344 4455566655 5678888888532211111110 011222333443
Q ss_pred ----HHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh
Q 044808 537 ----IACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNM 572 (623)
Q Consensus 537 ----~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~ 572 (623)
-.+..||.++=-+ .++=+.|+|+||.-...-+..
T Consensus 119 s~wlk~~msyL~~~Y~i--~k~n~VGhSmGg~~~~~Y~~~ 156 (288)
T COG4814 119 SKWLKKAMSYLQKHYNI--PKFNAVGHSMGGLGLTYYMID 156 (288)
T ss_pred HHHHHHHHHHHHHhcCC--ceeeeeeeccccHHHHHHHHH
Confidence 4566778776444 488899999999876655544
No 482
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=51.93 E-value=3.6e+02 Score=29.63 Aligned_cols=146 Identities=10% Similarity=0.101 Sum_probs=0.0
Q ss_pred CCC---EEEEEEeCceEEEEECCCCCccccccCccceeEEecCCeEEEEEeCCCCC-------------C-eEEEEECCC
Q 044808 160 NNK---LVAFRENCGTVCVIDSETGAPAEKPIQGCLEFEWAGDEAFLYTRRNAIAE-------------P-QVWFHKLGE 222 (623)
Q Consensus 160 DG~---~lA~~~~~~~l~v~dl~tg~~~~~~i~~~~~~~WspDg~l~y~~~d~~~~-------------~-~v~~~~lgt 222 (623)
||+ .+..+...+.|+.+|+++|+.+=..-....+++.+| +.+|+........ . .|+..++.+
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t 375 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT 375 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCcEeeEeEeeccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Q ss_pred CCcccEEEEeecCC---------ceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-ceeecCCCccceeEEEEeeC
Q 044808 223 EQSKDTCLYRTRED---------LFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-TLWFLPPWHLGIDMFVSHRG 292 (623)
Q Consensus 223 ~~~~d~lv~~~~~~---------~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l~~~~~~~~~~~~~dg 292 (623)
+ ..+.+.+.. .-.......-.+..|++.+.+. .||.+|.++|+ .++.-++..-.........+
T Consensus 376 G----~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG---~l~ald~~tG~~lW~~~~~~~~~a~P~~~~~~ 448 (488)
T cd00216 376 G----KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADG---YFRAFDATTGKELWKFRTPSGIQATPMTYEVN 448 (488)
T ss_pred C----cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCC---eEEEEECCCCceeeEEECCCCceEcCEEEEeC
Q ss_pred CEEEE-EeCCC------------------CCCeEEEEEeC
Q 044808 293 NQFFI-RRSDG------------------GFHSDVLTCPV 313 (623)
Q Consensus 293 ~~ly~-sn~~g------------------~~~~~L~~~d~ 313 (623)
+++|+ +...+ .+-..|+.+.|
T Consensus 449 g~~yv~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 488 (488)
T cd00216 449 GKQYVGVMVGGGGSFPTGMGGVAKLDRWTAMGGYIIAFSL 488 (488)
T ss_pred CEEEEEEEecCCccccccccccchhcccCCCCCEEEEEEC
No 483
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=50.65 E-value=34 Score=32.85 Aligned_cols=84 Identities=15% Similarity=0.162 Sum_probs=52.6
Q ss_pred CCcEEEEEeccCCCcCChhHH---HcccccCCCchHhHHHHHHHHHHHcCCCCC-CcEEEEEeChHHHHHHHHHHhC---
Q 044808 501 RGIIFAIAHVRGGDEKGKQWH---ENGKLLNKRNTFTDFIACADYLIKSNYCSE-DNLCIEGGSAGGMLIGAVLNMR--- 573 (623)
Q Consensus 501 ~G~~v~~~~~RG~~~~G~~~~---~~~~~~~~~~~~~D~~~~~~~l~~~~~~d~-~ri~i~G~S~GG~l~~~~~~~~--- 573 (623)
.=..|..|-||=..-+ .|. ...........+.|+.+|-+|-+++- +. .-+.+.|+|.|+.+...++..+
T Consensus 44 ~~~~vfAP~YRQatl~--~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~--n~GRPfILaGHSQGs~~l~~LL~e~~~~ 119 (207)
T PF11288_consen 44 GVCNVFAPRYRQATLY--AFLDTDREDAEKAFDLAYSDVRAAFDYYLANY--NNGRPFILAGHSQGSMHLLRLLKEEIAG 119 (207)
T ss_pred cCCccccChhhcchhh--hhhccCcchhHHHHHhhHHHHHHHHHHHHHhc--CCCCCEEEEEeChHHHHHHHHHHHHhcC
Confidence 3456667777743322 111 00011123457899999999766642 23 4688999999999999998764
Q ss_pred -C---CeeeEEEecCCccc
Q 044808 574 -P---ELFKVAVADVPSVD 588 (623)
Q Consensus 574 -p---~~f~a~v~~~~~~d 588 (623)
| .+.+|-+.+.+|..
T Consensus 120 ~pl~~rLVAAYliG~~v~~ 138 (207)
T PF11288_consen 120 DPLRKRLVAAYLIGYPVTV 138 (207)
T ss_pred chHHhhhheeeecCccccH
Confidence 2 24566666666654
No 484
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=50.42 E-value=3.2e+02 Score=28.71 Aligned_cols=111 Identities=11% Similarity=0.118 Sum_probs=56.1
Q ss_pred EEEeeeEECCCCCEEEEEEeCceEEEEECCCCCccc---c--ccCccc-eeEEecCC-eEEEEEeCCCCCCeEEEEECCC
Q 044808 150 YRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAE---K--PIQGCL-EFEWAGDE-AFLYTRRNAIAEPQVWFHKLGE 222 (623)
Q Consensus 150 ~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~---~--~i~~~~-~~~WspDg-~l~y~~~d~~~~~~v~~~~lgt 222 (623)
........||+|++||.+.+..++++++........ + .++... .+.+..+. +....-. .+ ++|..++-.
T Consensus 63 ~a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dk--ag--D~~~~di~s 138 (390)
T KOG3914|consen 63 LAPALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADK--AG--DVYSFDILS 138 (390)
T ss_pred ccccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEee--cC--Cceeeeeec
Confidence 345567899999999999877777777766543211 1 122222 25555554 3332211 11 233333322
Q ss_pred CCc-ccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECC
Q 044808 223 EQS-KDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVS 269 (623)
Q Consensus 223 ~~~-~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~ 269 (623)
..+ .-+++.. +-.....+.+|||+++|+. +.. ...|++....
T Consensus 139 ~~~~~~~~~lG--hvSml~dVavS~D~~~Iit-aDR--DEkIRvs~yp 181 (390)
T KOG3914|consen 139 ADSGRCEPILG--HVSMLLDVAVSPDDQFIIT-ADR--DEKIRVSRYP 181 (390)
T ss_pred ccccCcchhhh--hhhhhheeeecCCCCEEEE-ecC--CceEEEEecC
Confidence 110 0112221 1223457899999998753 322 2345555544
No 485
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=49.96 E-value=1.6e+02 Score=32.11 Aligned_cols=31 Identities=13% Similarity=0.233 Sum_probs=24.8
Q ss_pred EEEeeeEECCCCCEEEEEEeCceEEEEECCCC
Q 044808 150 YRITAFKVSPNNKLVAFRENCGTVCVIDSETG 181 (623)
Q Consensus 150 ~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg 181 (623)
.++-..+|.||.+.+.|..-. +++|+.++-.
T Consensus 146 ~~v~c~~W~p~S~~vl~c~g~-h~~IKpL~~n 176 (737)
T KOG1524|consen 146 ESIRCARWAPNSNSIVFCQGG-HISIKPLAAN 176 (737)
T ss_pred ceeEEEEECCCCCceEEecCC-eEEEeecccc
Confidence 456778999999999998654 7888887654
No 486
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=49.94 E-value=43 Score=32.49 Aligned_cols=52 Identities=17% Similarity=0.223 Sum_probs=31.2
Q ss_pred HhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHHh---C--CCeeeEEEecCCc
Q 044808 533 FTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLNM---R--PELFKVAVADVPS 586 (623)
Q Consensus 533 ~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~---~--p~~f~a~v~~~~~ 586 (623)
+.++...++-+.++ -...+|.+.|+|-||.++..++.. . +....+..-..|-
T Consensus 111 ~~~~~~~~~~~~~~--~p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tFg~P~ 167 (229)
T cd00519 111 YNQVLPELKSALKQ--YPDYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTFGQPR 167 (229)
T ss_pred HHHHHHHHHHHHhh--CCCceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEeCCCC
Confidence 34445555544443 234789999999999987655543 1 3345555555543
No 487
>KOG4328 consensus WD40 protein [Function unknown]
Probab=49.57 E-value=3.6e+02 Score=28.95 Aligned_cols=149 Identities=12% Similarity=0.207 Sum_probs=80.1
Q ss_pred EEeeeEECCCCCEEEEEEeCc-eEEEEECCCCCccc-ccc--Ccc--ceeEEecCC-eEEEEEeCCCCCC-eEEEEECCC
Q 044808 151 RITAFKVSPNNKLVAFRENCG-TVCVIDSETGAPAE-KPI--QGC--LEFEWAGDE-AFLYTRRNAIAEP-QVWFHKLGE 222 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~~-~~i--~~~--~~~~WspDg-~l~y~~~d~~~~~-~v~~~~lgt 222 (623)
.++.+.+||...--.|+.+-. +|+..|++++..-. -.. ++. .++.++.+. .+++... ... .++-++.+.
T Consensus 236 ~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~---~G~f~~iD~R~~~ 312 (498)
T KOG4328|consen 236 PVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDN---VGNFNVIDLRTDG 312 (498)
T ss_pred cccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeec---ccceEEEEeecCC
Confidence 477889999888766665443 99999999875321 012 122 236666666 4444432 112 455555443
Q ss_pred CCcccEEEEeecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCC--CC-ce-eecCCCcccee-EEEEeeCCEEEE
Q 044808 223 EQSKDTCLYRTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSR--PE-TL-WFLPPWHLGID-MFVSHRGNQFFI 297 (623)
Q Consensus 223 ~~~~d~lv~~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~--~~-~~-~~l~~~~~~~~-~~~~~dg~~ly~ 297 (623)
..-+...+ .+ .-..++++.|-..+++++++...+-.|| |+.. ++ .+ .-..++...+. .+|+|.++. ++
T Consensus 313 s~~~~~~l-h~---kKI~sv~~NP~~p~~laT~s~D~T~kIW--D~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gt-l~ 385 (498)
T KOG4328|consen 313 SEYENLRL-HK---KKITSVALNPVCPWFLATASLDQTAKIW--DLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGT-LL 385 (498)
T ss_pred ccchhhhh-hh---cccceeecCCCCchheeecccCcceeee--ehhhhcCCCCcceecccccceeeeeEEcCCCCc-eE
Confidence 21111111 11 1234577889888888776655555555 4433 22 11 12234433333 368999999 55
Q ss_pred -EeCCCCCCeEEEEE
Q 044808 298 -RRSDGGFHSDVLTC 311 (623)
Q Consensus 298 -sn~~g~~~~~L~~~ 311 (623)
|..+. +.+|+-.
T Consensus 386 TT~~D~--~IRv~ds 398 (498)
T KOG4328|consen 386 TTCQDN--EIRVFDS 398 (498)
T ss_pred eeccCC--ceEEeec
Confidence 66652 4455543
No 488
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=49.54 E-value=24 Score=39.23 Aligned_cols=73 Identities=7% Similarity=0.072 Sum_probs=49.2
Q ss_pred hhhHHHHHCCcEEEEEeccCCCcCChhHHHccccc-CCCchHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHHH
Q 044808 493 ASRLTILDRGIIFAIAHVRGGDEKGKQWHENGKLL-NKRNTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVLN 571 (623)
Q Consensus 493 ~~~~~~~~~G~~v~~~~~RG~~~~G~~~~~~~~~~-~~~~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~ 571 (623)
.....|++.||. --|.+|.. -+|+.+.... ....-|..+...+|.+.+. ..-.+|.|.|+|+||+++...+.
T Consensus 160 kLIe~L~~iGY~--~~nL~gAP---YDWRls~~~le~rd~YF~rLK~lIE~ay~~--nggkKVVLV~HSMGglv~lyFL~ 232 (642)
T PLN02517 160 VLIANLARIGYE--EKNMYMAA---YDWRLSFQNTEVRDQTLSRLKSNIELMVAT--NGGKKVVVVPHSMGVLYFLHFMK 232 (642)
T ss_pred HHHHHHHHcCCC--CCceeecc---cccccCccchhhhhHHHHHHHHHHHHHHHH--cCCCeEEEEEeCCchHHHHHHHH
Confidence 556788889998 57777644 4788764322 2233445555666655443 12479999999999999998776
Q ss_pred h
Q 044808 572 M 572 (623)
Q Consensus 572 ~ 572 (623)
.
T Consensus 233 w 233 (642)
T PLN02517 233 W 233 (642)
T ss_pred h
Confidence 3
No 489
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=48.93 E-value=15 Score=31.25 Aligned_cols=19 Identities=21% Similarity=0.315 Sum_probs=15.9
Q ss_pred eEECCCCCEEEEEEeCceE
Q 044808 155 FKVSPNNKLVAFRENCGTV 173 (623)
Q Consensus 155 ~~~SPDG~~lA~~~~~~~l 173 (623)
-.|||||++|.|+.+..-+
T Consensus 73 HvfSpDG~~lSFTYNDhVm 91 (122)
T PF12566_consen 73 HVFSPDGSWLSFTYNDHVM 91 (122)
T ss_pred eEECCCCCEEEEEecchhh
Confidence 4899999999999887533
No 490
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=48.70 E-value=3.4e+02 Score=29.62 Aligned_cols=105 Identities=15% Similarity=0.128 Sum_probs=55.0
Q ss_pred eeeEECCCCCEEEEEEeCceEEEEECCCCCcccc-ccC------c---cceeEEecCC------eEEEEEe---CCCC--
Q 044808 153 TAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEK-PIQ------G---CLEFEWAGDE------AFLYTRR---NAIA-- 211 (623)
Q Consensus 153 ~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~-~i~------~---~~~~~WspDg------~l~y~~~---d~~~-- 211 (623)
-.+.+.|||+.+.--...+.|++++..++..... .++ + .-++++.||- +.+|..+ ....
T Consensus 33 w~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~~~ 112 (454)
T TIGR03606 33 WALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDKEL 112 (454)
T ss_pred eEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCCCc
Confidence 3579999997554333345898888776643211 121 1 1248888762 3344433 1111
Q ss_pred -CC-eEEEEECCCC---CcccEEEEeec-CC--ceeEEEEEcCCCcEEEEEeecc
Q 044808 212 -EP-QVWFHKLGEE---QSKDTCLYRTR-ED--LFDLTLEASESKKFLFVKSKTK 258 (623)
Q Consensus 212 -~~-~v~~~~lgt~---~~~d~lv~~~~-~~--~~~~~~~~S~Dg~~l~i~s~~~ 258 (623)
.. .|.+.++... ......|+... .. .+--.+.+.|||+ |++...+.
T Consensus 113 ~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~-LYVs~GD~ 166 (454)
T TIGR03606 113 PNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGK-IYYTIGEQ 166 (454)
T ss_pred cCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCc-EEEEECCC
Confidence 13 7877776421 11223455422 11 1233567899995 77766543
No 491
>PLN02454 triacylglycerol lipase
Probab=48.46 E-value=29 Score=36.97 Aligned_cols=40 Identities=15% Similarity=0.158 Sum_probs=29.2
Q ss_pred chHhHHHHHHHHHHHcCCCCCCcEEEEEeChHHHHHHHHH
Q 044808 531 NTFTDFIACADYLIKSNYCSEDNLCIEGGSAGGMLIGAVL 570 (623)
Q Consensus 531 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~S~GG~l~~~~~ 570 (623)
...+++.+.++-|+++---.+-+|.+.|+|.||-|+..++
T Consensus 207 S~r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA 246 (414)
T PLN02454 207 SARSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAA 246 (414)
T ss_pred HHHHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHH
Confidence 4557788888888875322223699999999999987665
No 492
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=47.54 E-value=39 Score=38.65 Aligned_cols=56 Identities=13% Similarity=0.183 Sum_probs=39.2
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccccccCcc----ceeEEecCCe-EEEEEeC
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQGC----LEFEWAGDEA-FLYTRRN 208 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~~~----~~~~WspDg~-l~y~~~d 208 (623)
.+....||+||.+|.-+-.++.+.+|.++|++. .-+|.. ..+.||||+. ......|
T Consensus 253 ~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--qfLPRLgs~I~~i~vS~ds~~~sl~~~D 313 (792)
T KOG1963|consen 253 EVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--QFLPRLGSPILHIVVSPDSDLYSLVLED 313 (792)
T ss_pred ccceeEEecCCceEeecccceEEEEEeecCCCc--ccccccCCeeEEEEEcCCCCeEEEEecC
Confidence 567789999998877665555888899999872 234433 3599999994 4444433
No 493
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=47.39 E-value=72 Score=35.03 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=31.6
Q ss_pred CcEEEeeeEECCCCCEEEEEEeCceEEEEECCCCCcc
Q 044808 148 ENYRITAFKVSPNNKLVAFRENCGTVCVIDSETGAPA 184 (623)
Q Consensus 148 ~~~~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~ 184 (623)
...+++++.++-||=.+|.+.+.+.++|+||.+.+++
T Consensus 227 ~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl 263 (703)
T KOG2321|consen 227 AAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL 263 (703)
T ss_pred ccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce
Confidence 3456888999999999999998889999999887764
No 494
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=46.78 E-value=37 Score=39.23 Aligned_cols=36 Identities=14% Similarity=0.295 Sum_probs=24.6
Q ss_pred eechhhcccCCCCcEEEeeeEECCCCCEEEEEEeCc-----eEEEEE
Q 044808 136 IDEEVIKYKNSLENYRITAFKVSPNNKLVAFRENCG-----TVCVID 177 (623)
Q Consensus 136 lD~n~~a~~~~~~~~~l~~~~~SPDG~~lA~~~~~~-----~l~v~d 177 (623)
+|+..+++ |+..+. .+||||+-+|++..++ +|||.+
T Consensus 228 ~d~a~~~~----g~~~l~--~lSpDGtv~a~a~~dG~v~f~Qiyi~g 268 (1283)
T KOG1916|consen 228 TDMAFFAE----GVLKLA--SLSPDGTVFAWAISDGSVGFYQIYITG 268 (1283)
T ss_pred ccHHHHhh----chhhhe--eeCCCCcEEEEeecCCccceeeeeeec
Confidence 34444443 344444 4999999999998887 677654
No 495
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=46.72 E-value=41 Score=34.66 Aligned_cols=67 Identities=12% Similarity=0.248 Sum_probs=47.7
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEEECCCCCccc----cccCccceeEEecCCeEEEEEeCCCCCC-eEEEEE
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVIDSETGAPAE----KPIQGCLEFEWAGDEAFLYTRRNAIAEP-QVWFHK 219 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~----~~i~~~~~~~WspDg~l~y~~~d~~~~~-~v~~~~ 219 (623)
.+-.+.+||-|+-++-++...+|+|+.+..|.-.. .....+.++.||-|+++++.-.|+. . ++|.-+
T Consensus 274 AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~--nvRlWka~ 345 (433)
T KOG0268|consen 274 AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDG--NVRLWKAK 345 (433)
T ss_pred eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCc--ceeeeecc
Confidence 45678999999988887766689999998776432 1233556799999998877766542 2 555544
No 496
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=46.71 E-value=2e+02 Score=29.12 Aligned_cols=66 Identities=12% Similarity=0.050 Sum_probs=44.2
Q ss_pred eeEECCCCCEEEEEEeCceEEEEECCCCCccccccC--ccceeEEecCC--eEEEEEe-CCCCCCeEEEEECCCC
Q 044808 154 AFKVSPNNKLVAFRENCGTVCVIDSETGAPAEKPIQ--GCLEFEWAGDE--AFLYTRR-NAIAEPQVWFHKLGEE 223 (623)
Q Consensus 154 ~~~~SPDG~~lA~~~~~~~l~v~dl~tg~~~~~~i~--~~~~~~WspDg--~l~y~~~-d~~~~~~v~~~~lgt~ 223 (623)
...||-||.+++.+...+++.+|||++|+..+-... .+....|-+.. .++.+.. |. .|.+++....
T Consensus 77 ~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDK----TlKfWD~R~~ 147 (347)
T KOG0647|consen 77 DVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDK----TLKFWDTRSS 147 (347)
T ss_pred EEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEeccccc----ceeecccCCC
Confidence 569999998887776666999999999987643233 23458887665 3444432 33 4666666543
No 497
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=46.69 E-value=1.9e+02 Score=31.54 Aligned_cols=124 Identities=19% Similarity=0.142 Sum_probs=76.0
Q ss_pred CCCCeEEEEEEEeCCCccCCCCccEEEEEcCCCCCCCCCCCCchhhhHHHHHC-CcE-EEEEeccCCCc---CChhHHHc
Q 044808 449 SDGEEIPISIVYRKNRVKLDGSDPLLLFGYGSYGLGPSSYSNSIASRLTILDR-GII-FAIAHVRGGDE---KGKQWHEN 523 (623)
Q Consensus 449 ~dG~~i~~~l~~~~~~~~~~~~~P~il~~~Gg~~~~~~~~~~~~~~~~~~~~~-G~~-v~~~~~RG~~~---~G~~~~~~ 523 (623)
..+.+|-.+ ..|-|+ |.|+.||.-| |.. ..+|. ...++.+ |.- .++.|.|=-|| .|.+=++
T Consensus 273 ~~reEi~yY-FnPGD~-----KPPL~VYFSG-yR~--aEGFE----gy~MMk~Lg~PfLL~~DpRleGGaFYlGs~eyE- 338 (511)
T TIGR03712 273 SKRQEFIYY-FNPGDF-----KPPLNVYFSG-YRP--AEGFE----GYFMMKRLGAPFLLIGDPRLEGGAFYLGSDEYE- 338 (511)
T ss_pred CCCCeeEEe-cCCcCC-----CCCeEEeecc-Ccc--cCcch----hHHHHHhcCCCeEEeeccccccceeeeCcHHHH-
Confidence 346666544 677776 5699999877 332 34565 2234443 554 46778886443 2333222
Q ss_pred ccccCCCchHhHHHHHHH-HHHHcCCCCCCcEEEEEeChHHHHHHHHHHh-CCCeeeEEEecCCccchhhhhhCCCCcc
Q 044808 524 GKLLNKRNTFTDFIACAD-YLIKSNYCSEDNLCIEGGSAGGMLIGAVLNM-RPELFKVAVADVPSVDVLTTILFYPRKR 600 (623)
Q Consensus 524 ~~~~~~~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~S~GG~l~~~~~~~-~p~~f~a~v~~~~~~d~~~~~~~~~~~~ 600 (623)
.-++..++ +|...|+ +++.+.+.|-|+|-|-++.-.++ .| +|+|..=|++++=+.-.++...+
T Consensus 339 ----------~~I~~~I~~~L~~LgF-~~~qLILSGlSMGTfgAlYYga~l~P---~AIiVgKPL~NLGtiA~n~rL~R 403 (511)
T TIGR03712 339 ----------QGIINVIQEKLDYLGF-DHDQLILSGLSMGTFGALYYGAKLSP---HAIIVGKPLVNLGTIASRMRLDR 403 (511)
T ss_pred ----------HHHHHHHHHHHHHhCC-CHHHeeeccccccchhhhhhcccCCC---ceEEEcCcccchhhhhccccccC
Confidence 12333443 3444565 56999999999999998876654 33 68888889999754444444433
No 498
>PRK13613 lipoprotein LpqB; Provisional
Probab=46.42 E-value=1.2e+02 Score=34.26 Aligned_cols=74 Identities=16% Similarity=0.284 Sum_probs=45.7
Q ss_pred EEEeeeEECCCCCEEEEEEeCc---eEEEEE---CCCCC-cccc------ccCccceeEEecCCeEEEEEeCCCCCCeEE
Q 044808 150 YRITAFKVSPNNKLVAFRENCG---TVCVID---SETGA-PAEK------PIQGCLEFEWAGDEAFLYTRRNAIAEPQVW 216 (623)
Q Consensus 150 ~~l~~~~~SPDG~~lA~~~~~~---~l~v~d---l~tg~-~~~~------~i~~~~~~~WspDg~l~y~~~d~~~~~~v~ 216 (623)
..|..+++|+||-++|...+.+ +|+|-- -+.|+ .+.. .+..+.+++|..+++|+...........+|
T Consensus 455 ~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL~Vlg~~~~~~~~v~ 534 (599)
T PRK13613 455 HRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQLVVLGREEGGVQQAR 534 (599)
T ss_pred CEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCCEEEEEeccCCCCcceE
Confidence 3688999999999999998743 444432 23443 1211 122334699999998877432221122688
Q ss_pred EEECCCC
Q 044808 217 FHKLGEE 223 (623)
Q Consensus 217 ~~~lgt~ 223 (623)
+..++..
T Consensus 535 ~v~vdG~ 541 (599)
T PRK13613 535 YVQVDGS 541 (599)
T ss_pred EEecCCc
Confidence 8888754
No 499
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=45.05 E-value=6.3e+02 Score=30.44 Aligned_cols=186 Identities=15% Similarity=0.126 Sum_probs=91.7
Q ss_pred EEeeeEECCCCCEEEEEEeCceEEEE----ECCCCCccc-cccC-ccceeEEecCC-eEEEEEeCCC-------CCC--e
Q 044808 151 RITAFKVSPNNKLVAFRENCGTVCVI----DSETGAPAE-KPIQ-GCLEFEWAGDE-AFLYTRRNAI-------AEP--Q 214 (623)
Q Consensus 151 ~l~~~~~SPDG~~lA~~~~~~~l~v~----dl~tg~~~~-~~i~-~~~~~~WspDg-~l~y~~~d~~-------~~~--~ 214 (623)
.+-++.+-+|..-|.++...|.|.+. |..+.+.-- ..++ ++...+||||+ -+++++...+ ..+ +
T Consensus 77 ~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E 156 (928)
T PF04762_consen 77 KIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISE 156 (928)
T ss_pred cEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEE
Confidence 46677888888888888877777777 444433210 1232 34459999999 5666654321 000 0
Q ss_pred E--E--------EEECCCCCc-----------------ccEEE-Eeec---CCceeEEEEEcCCCcEEEEEeecc--e-e
Q 044808 215 V--W--------FHKLGEEQS-----------------KDTCL-YRTR---EDLFDLTLEASESKKFLFVKSKTK--V-T 260 (623)
Q Consensus 215 v--~--------~~~lgt~~~-----------------~d~lv-~~~~---~~~~~~~~~~S~Dg~~l~i~s~~~--~-~ 260 (623)
+ . ..++|=|.. ++.+- .++. .....+.++|-.||+|+++++-+. + .
T Consensus 157 ~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~ 236 (928)
T PF04762_consen 157 VPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSR 236 (928)
T ss_pred eecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCce
Confidence 0 0 011111100 00000 0000 111346788999999998877532 2 3
Q ss_pred eEEEEEECCCCCceeecCCCccceeE--EEEeeCCEEEEEeCCCCCCeEEEEEeCCCCCceeeEEcC-CCCceEeEEEEe
Q 044808 261 GFVYYFDVSRPETLWFLPPWHLGIDM--FVSHRGNQFFIRRSDGGFHSDVLTCPVDNTFETTVLIPH-RERVRVEEVRLF 337 (623)
Q Consensus 261 s~l~~~dl~~~~~~~~l~~~~~~~~~--~~~~dg~~ly~sn~~g~~~~~L~~~d~~~~~~~~~li~~-~~d~~i~~~~~~ 337 (623)
..+.+.+-+ |. +........|.+. .|-|.|..+.-+.+. ..+..|+-+.-++-.-....++. ..+..+..+.|.
T Consensus 237 R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~-~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn 313 (928)
T PF04762_consen 237 RVIRVYSRE-GE-LQSTSEPVDGLEGALSWRPSGNLIASSQRL-PDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWN 313 (928)
T ss_pred eEEEEECCC-ce-EEeccccCCCccCCccCCCCCCEEEEEEEc-CCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEEC
Confidence 445555544 33 4433334444432 577888766653332 22455665543321111112222 223456677776
Q ss_pred CC
Q 044808 338 AD 339 (623)
Q Consensus 338 ~~ 339 (623)
.+
T Consensus 314 ~d 315 (928)
T PF04762_consen 314 SD 315 (928)
T ss_pred CC
Confidence 54
No 500
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=44.84 E-value=5e+02 Score=29.22 Aligned_cols=129 Identities=12% Similarity=0.086 Sum_probs=68.8
Q ss_pred eEECCCCCEEEEEEeCc-eEEEEECCCCCcc------c-cccC--cc--ce-eEEecCC---eEEEEEeCCCCCCeEEEE
Q 044808 155 FKVSPNNKLVAFRENCG-TVCVIDSETGAPA------E-KPIQ--GC--LE-FEWAGDE---AFLYTRRNAIAEPQVWFH 218 (623)
Q Consensus 155 ~~~SPDG~~lA~~~~~~-~l~v~dl~tg~~~------~-~~i~--~~--~~-~~WspDg---~l~y~~~d~~~~~~v~~~ 218 (623)
..+.-|...||-+.... .|.||||...... + +.++ .. .+ ....-|. ++|-...|. .||.+
T Consensus 223 vv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~----sIy~y 298 (720)
T KOG0321|consen 223 VVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDN----SIYFY 298 (720)
T ss_pred EEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCC----cEEEE
Confidence 56777888888776533 8999999865321 1 1111 11 13 5555564 455555444 59999
Q ss_pred ECCCCCcccEEEE-eecCCceeEEEEEcCCCcEEEEEeecceeeEEEEEECCCCC-ceeecCCCccceeE-EEEe
Q 044808 219 KLGEEQSKDTCLY-RTREDLFDLTLEASESKKFLFVKSKTKVTGFVYYFDVSRPE-TLWFLPPWHLGIDM-FVSH 290 (623)
Q Consensus 219 ~lgt~~~~d~lv~-~~~~~~~~~~~~~S~Dg~~l~i~s~~~~~s~l~~~dl~~~~-~~~~l~~~~~~~~~-~~~~ 290 (623)
++.+-......+| +.....|++--..|||+.+|+-.++ ....-+|++ .+.. .+..+......+.+ .|.+
T Consensus 299 nm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs-d~~ayiw~v--s~~e~~~~~l~Ght~eVt~V~w~p 370 (720)
T KOG0321|consen 299 NMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS-DEQAYIWVV--SSPEAPPALLLGHTREVTTVRWLP 370 (720)
T ss_pred eccccCcCchhhccCcccceeeeeeecCCCCceEeccCC-Ccceeeeee--cCccCChhhhhCcceEEEEEeecc
Confidence 8865432222222 2233456666668999999864332 223344444 3433 24444444433333 3444
Done!